RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep']
Forking launchpad-buildd slave process...
Kernel version: 2.6.24-28-server #1 SMP Wed Aug 18 21:17:51 UTC 2010 x86_64
Buildd toolchain package versions: launchpad-buildd_110~0.IS.08.04 python-lpbuildd_110~0.IS.08.04 bzr_2.4.0-0ubuntu2~11.IS.8.04.
Syncing the system clock with the buildd NTP service...
 1 Jan 08:43:28 ntpdate[9865]: adjust time server 10.211.37.1 offset 0.000275 sec
RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'e73971f7dea06baee2bbf27a58dd38619e2f7212', '/home/buildd/filecache-default/242c487390f058a1d75a2cb7f5b6bf1c4775bbd5']
Unpacking chroot for build e73971f7dea06baee2bbf27a58dd38619e2f7212
RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'e73971f7dea06baee2bbf27a58dd38619e2f7212']
Mounting chroot for build e73971f7dea06baee2bbf27a58dd38619e2f7212
RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'e73971f7dea06baee2bbf27a58dd38619e2f7212', 'deb http://ftpmaster.internal/ubuntu precise main universe']
Overriding sources.list in build-e73971f7dea06baee2bbf27a58dd38619e2f7212
RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'e73971f7dea06baee2bbf27a58dd38619e2f7212', 'i386']
Updating debian chroot for build e73971f7dea06baee2bbf27a58dd38619e2f7212
Ign http://ftpmaster.internal precise InRelease
Get:1 http://ftpmaster.internal precise Release.gpg [198 B]
Get:2 http://ftpmaster.internal precise Release [49.6 kB]
Get:3 http://ftpmaster.internal precise/main i386 Packages [1276 kB]
Get:4 http://ftpmaster.internal precise/universe i386 Packages [4715 kB]
Get:5 http://ftpmaster.internal precise/main TranslationIndex [3502 B]
Get:6 http://ftpmaster.internal precise/universe TranslationIndex [2712 B]
Get:7 http://ftpmaster.internal precise/main Translation-en [719 kB]
Get:8 http://ftpmaster.internal precise/universe Translation-en [3317 kB]
Fetched 10.1 MB in 4s (2283 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
  libasn1-8-heimdal libgssapi3-heimdal libhcrypto4-heimdal
  libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal
  libkrb5-26-heimdal libroken18-heimdal libsqlite3-0 libwind0-heimdal
The following packages will be upgraded:
  base-files base-passwd bash binutils bsdutils busybox-initramfs bzip2
  coreutils cpp cpp-4.6 debconf debianutils dpkg dpkg-dev fakeroot g++ g++-4.6
  gcc gcc-4.6 gcc-4.6-base gnupg gpgv grep ifupdown initramfs-tools
  initramfs-tools-bin initscripts iproute klibc-utils libacl1
  libalgorithm-diff-xs-perl libattr1 libblkid1 libbz2-1.0 libc-bin
  libc-dev-bin libc6 libc6-dev libclass-isa-perl libcurl3-gnutls libdb5.1
  libdpkg-perl libgcc1 libglib2.0-0 libgmp10 libgnutls26 libgomp1
  libgssapi-krb5-2 libidn11 libk5crypto3 libklibc libkrb5-3 libkrb5support0
  libldap-2.4-2 libmount1 libmpfr4 libncurses5 libncursesw5 libp11-kit0
  libpciaccess0 libquadmath0 libreadline6 libsasl2-2 libselinux1 libstdc++6
  libstdc++6-4.6-dev libtinfo5 libudev0 libuuid1 linux-libc-dev locales login
  lsb-base module-init-tools mount multiarch-support ncurses-base ncurses-bin
  passwd perl perl-base perl-modules pkg-create-dbgsym pkgbinarymangler procps
  python-minimal python2.7-minimal readline-common sysv-rc sysvinit-utils tar
  ubuntu-keyring udev util-linux
94 upgraded, 10 newly installed, 0 to remove and 0 not upgraded.
Need to get 65.6 MB of archives.
After this operation, 10.2 MB disk space will be freed.
WARNING: The following packages cannot be authenticated!
  base-files debianutils bash libc-dev-bin libc6-dev libc-bin libc6
  linux-libc-dev libgomp1 gcc-4.6-base libgcc1 cpp-4.6 libquadmath0
  libstdc++6-4.6-dev g++-4.6 gcc-4.6 libstdc++6 libgmp10 libmpfr4 binutils
  libattr1 libacl1 dpkg coreutils grep login libselinux1 passwd libuuid1
  libblkid1 libmount1 mount libncursesw5 libtinfo5 libncurses5 ncurses-bin
  perl libalgorithm-diff-xs-perl perl-base perl-modules libclass-isa-perl
  bzip2 libbz2-1.0 libdb5.1 tar lsb-base debconf util-linux base-passwd
  bsdutils ncurses-base python2.7-minimal python-minimal readline-common
  libreadline6 libsqlite3-0 libglib2.0-0 libpciaccess0 libudev0
  module-init-tools libroken18-heimdal libasn1-8-heimdal libp11-kit0
  libgnutls26 libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 libidn11
  libhcrypto4-heimdal libheimbase1-heimdal libwind0-heimdal libhx509-5-heimdal
  libkrb5-26-heimdal libheimntlm0-heimdal libgssapi3-heimdal libsasl2-2
  libldap-2.4-2 libcurl3-gnutls gpgv gnupg ubuntu-keyring multiarch-support
  busybox-initramfs iproute sysvinit-utils sysv-rc initscripts ifupdown
  initramfs-tools initramfs-tools-bin klibc-utils libklibc procps udev locales
  cpp dpkg-dev libdpkg-perl fakeroot gcc g++ pkg-create-dbgsym
  pkgbinarymangler
Authentication warning overridden.
Get:1 http://ftpmaster.internal/ubuntu/ precise/main base-files i386 6.5ubuntu3 [65.6 kB]
Get:2 http://ftpmaster.internal/ubuntu/ precise/main debianutils i386 4.1 [62.9 kB]
Get:3 http://ftpmaster.internal/ubuntu/ precise/main bash i386 4.2-1ubuntu1 [616 kB]
Get:4 http://ftpmaster.internal/ubuntu/ precise/main libc-dev-bin i386 2.13-23ubuntu1 [77.5 kB]
Get:5 http://ftpmaster.internal/ubuntu/ precise/main libc6-dev i386 2.13-23ubuntu1 [5026 kB]
Get:6 http://ftpmaster.internal/ubuntu/ precise/main libc-bin i386 2.13-23ubuntu1 [1106 kB]
Get:7 http://ftpmaster.internal/ubuntu/ precise/main libc6 i386 2.13-23ubuntu1 [3800 kB]
Get:8 http://ftpmaster.internal/ubuntu/ precise/main linux-libc-dev i386 3.2.0-7.13 [821 kB]
Get:9 http://ftpmaster.internal/ubuntu/ precise/main libgomp1 i386 4.6.2-9ubuntu1 [28.3 kB]
Get:10 http://ftpmaster.internal/ubuntu/ precise/main gcc-4.6-base i386 4.6.2-9ubuntu1 [16.0 kB]
Get:11 http://ftpmaster.internal/ubuntu/ precise/main libgcc1 i386 1:4.6.2-9ubuntu1 [54.3 kB]
Get:12 http://ftpmaster.internal/ubuntu/ precise/main cpp-4.6 i386 4.6.2-9ubuntu1 [4658 kB]
Get:13 http://ftpmaster.internal/ubuntu/ precise/main libquadmath0 i386 4.6.2-9ubuntu1 [195 kB]
Get:14 http://ftpmaster.internal/ubuntu/ precise/main libstdc++6-4.6-dev i386 4.6.2-9ubuntu1 [1628 kB]
Get:15 http://ftpmaster.internal/ubuntu/ precise/main g++-4.6 i386 4.6.2-9ubuntu1 [6787 kB]
Get:16 http://ftpmaster.internal/ubuntu/ precise/main gcc-4.6 i386 4.6.2-9ubuntu1 [7547 kB]
Get:17 http://ftpmaster.internal/ubuntu/ precise/main libstdc++6 i386 4.6.2-9ubuntu1 [333 kB]
Get:18 http://ftpmaster.internal/ubuntu/ precise/main libgmp10 i386 2:5.0.2+dfsg-2ubuntu1 [264 kB]
Get:19 http://ftpmaster.internal/ubuntu/ precise/main libmpfr4 i386 3.1.0-3 [199 kB]
Get:20 http://ftpmaster.internal/ubuntu/ precise/main binutils i386 2.22-2ubuntu1 [2389 kB]
Get:21 http://ftpmaster.internal/ubuntu/ precise/main libattr1 i386 1:2.4.46-5ubuntu1 [10.6 kB]
Get:22 http://ftpmaster.internal/ubuntu/ precise/main libacl1 i386 2.2.51-5ubuntu1 [18.3 kB]
Get:23 http://ftpmaster.internal/ubuntu/ precise/main dpkg i386 1.16.1.2ubuntu5 [1814 kB]
Get:24 http://ftpmaster.internal/ubuntu/ precise/main coreutils i386 8.13-3ubuntu2 [2516 kB]
Get:25 http://ftpmaster.internal/ubuntu/ precise/main grep i386 2.10-1 [255 kB]
Get:26 http://ftpmaster.internal/ubuntu/ precise/main login i386 1:4.1.4.2+svn3283-3ubuntu3 [284 kB]
Get:27 http://ftpmaster.internal/ubuntu/ precise/main libselinux1 i386 2.1.0-4ubuntu1 [62.2 kB]
Get:28 http://ftpmaster.internal/ubuntu/ precise/main passwd i386 1:4.1.4.2+svn3283-3ubuntu3 [926 kB]
Get:29 http://ftpmaster.internal/ubuntu/ precise/main libuuid1 i386 2.20.1-1ubuntu1 [13.8 kB]
Get:30 http://ftpmaster.internal/ubuntu/ precise/main libblkid1 i386 2.20.1-1ubuntu1 [81.0 kB]
Get:31 http://ftpmaster.internal/ubuntu/ precise/main libmount1 i386 2.20.1-1ubuntu1 [72.1 kB]
Get:32 http://ftpmaster.internal/ubuntu/ precise/main mount i386 2.20.1-1ubuntu1 [167 kB]
Get:33 http://ftpmaster.internal/ubuntu/ precise/main libncursesw5 i386 5.9-4 [145 kB]
Get:34 http://ftpmaster.internal/ubuntu/ precise/main libtinfo5 i386 5.9-4 [90.0 kB]
Get:35 http://ftpmaster.internal/ubuntu/ precise/main libncurses5 i386 5.9-4 [116 kB]
Get:36 http://ftpmaster.internal/ubuntu/ precise/main ncurses-bin i386 5.9-4 [151 kB]
Get:37 http://ftpmaster.internal/ubuntu/ precise/main perl i386 5.14.2-6ubuntu1 [3675 kB]
Get:38 http://ftpmaster.internal/ubuntu/ precise/main libalgorithm-diff-xs-perl i386 0.04-2build2 [12.9 kB]
Get:39 http://ftpmaster.internal/ubuntu/ precise/main perl-base i386 5.14.2-6ubuntu1 [1424 kB]
Get:40 http://ftpmaster.internal/ubuntu/ precise/main perl-modules all 5.14.2-6ubuntu1 [3369 kB]
Get:41 http://ftpmaster.internal/ubuntu/ precise/main libclass-isa-perl all 0.36-3 [11.9 kB]
Get:42 http://ftpmaster.internal/ubuntu/ precise/main bzip2 i386 1.0.6-1 [36.8 kB]
Get:43 http://ftpmaster.internal/ubuntu/ precise/main libbz2-1.0 i386 1.0.6-1 [33.7 kB]
Get:44 http://ftpmaster.internal/ubuntu/ precise/main libdb5.1 i386 5.1.25-11build1 [736 kB]
Get:45 http://ftpmaster.internal/ubuntu/ precise/main tar i386 1.26-3ubuntu1 [219 kB]
Get:46 http://ftpmaster.internal/ubuntu/ precise/main lsb-base all 4.0-0ubuntu17 [10.5 kB]
Get:47 http://ftpmaster.internal/ubuntu/ precise/main debconf i386 1.5.41ubuntu1 [145 kB]
Get:48 http://ftpmaster.internal/ubuntu/ precise/main util-linux i386 2.20.1-1ubuntu1 [588 kB]
Get:49 http://ftpmaster.internal/ubuntu/ precise/main base-passwd i386 3.5.24 [38.7 kB]
Get:50 http://ftpmaster.internal/ubuntu/ precise/main bsdutils i386 1:2.20.1-1ubuntu1 [41.7 kB]
Get:51 http://ftpmaster.internal/ubuntu/ precise/main ncurses-base all 5.9-4 [21.0 kB]
Get:52 http://ftpmaster.internal/ubuntu/ precise/main python2.7-minimal i386 2.7.2-9 [1582 kB]
Get:53 http://ftpmaster.internal/ubuntu/ precise/main python-minimal all 2.7.2-9ubuntu2 [29.6 kB]
Get:54 http://ftpmaster.internal/ubuntu/ precise/main readline-common i386 6.2-8 [49.9 kB]
Get:55 http://ftpmaster.internal/ubuntu/ precise/main libreadline6 i386 6.2-8 [134 kB]
Get:56 http://ftpmaster.internal/ubuntu/ precise/main libsqlite3-0 i386 3.7.9-2ubuntu1 [354 kB]
Get:57 http://ftpmaster.internal/ubuntu/ precise/main libglib2.0-0 i386 2.31.4.tested-0ubuntu3 [1174 kB]
Get:58 http://ftpmaster.internal/ubuntu/ precise/main libpciaccess0 i386 0.12.902-1 [22.3 kB]
Get:59 http://ftpmaster.internal/ubuntu/ precise/main libudev0 i386 175-0ubuntu3 [33.3 kB]
Get:60 http://ftpmaster.internal/ubuntu/ precise/main module-init-tools i386 3.16-1ubuntu2 [102 kB]
Get:61 http://ftpmaster.internal/ubuntu/ precise/main libroken18-heimdal i386 1.5.dfsg.1-3 [46.4 kB]
Get:62 http://ftpmaster.internal/ubuntu/ precise/main libasn1-8-heimdal i386 1.5.dfsg.1-3 [228 kB]
Get:63 http://ftpmaster.internal/ubuntu/ precise/main libp11-kit0 i386 0.8-2 [33.5 kB]
Get:64 http://ftpmaster.internal/ubuntu/ precise/main libgnutls26 i386 2.12.14-5 [448 kB]
Get:65 http://ftpmaster.internal/ubuntu/ precise/main libgssapi-krb5-2 i386 1.10+dfsg~alpha1-6ubuntu1 [120 kB]
Get:66 http://ftpmaster.internal/ubuntu/ precise/main libk5crypto3 i386 1.10+dfsg~alpha1-6ubuntu1 [77.1 kB]
Get:67 http://ftpmaster.internal/ubuntu/ precise/main libkrb5-3 i386 1.10+dfsg~alpha1-6ubuntu1 [365 kB]
Get:68 http://ftpmaster.internal/ubuntu/ precise/main libkrb5support0 i386 1.10+dfsg~alpha1-6ubuntu1 [24.2 kB]
Get:69 http://ftpmaster.internal/ubuntu/ precise/main libidn11 i386 1.23-2 [112 kB]
Get:70 http://ftpmaster.internal/ubuntu/ precise/main libhcrypto4-heimdal i386 1.5.dfsg.1-3 [103 kB]
Get:71 http://ftpmaster.internal/ubuntu/ precise/main libheimbase1-heimdal i386 1.5.dfsg.1-3 [11.9 kB]
Get:72 http://ftpmaster.internal/ubuntu/ precise/main libwind0-heimdal i386 1.5.dfsg.1-3 [77.5 kB]
Get:73 http://ftpmaster.internal/ubuntu/ precise/main libhx509-5-heimdal i386 1.5.dfsg.1-3 [126 kB]
Get:74 http://ftpmaster.internal/ubuntu/ precise/main libkrb5-26-heimdal i386 1.5.dfsg.1-3 [224 kB]
Get:75 http://ftpmaster.internal/ubuntu/ precise/main libheimntlm0-heimdal i386 1.5.dfsg.1-3 [16.7 kB]
Get:76 http://ftpmaster.internal/ubuntu/ precise/main libgssapi3-heimdal i386 1.5.dfsg.1-3 [111 kB]
Get:77 http://ftpmaster.internal/ubuntu/ precise/main libsasl2-2 i386 2.1.24~rc1.dfsg1+cvs2011-05-23-4ubuntu3 [69.9 kB]
Get:78 http://ftpmaster.internal/ubuntu/ precise/main libldap-2.4-2 i386 2.4.25-4ubuntu1 [184 kB]
Get:79 http://ftpmaster.internal/ubuntu/ precise/main libcurl3-gnutls i386 7.22.0-3ubuntu1 [232 kB]
Get:80 http://ftpmaster.internal/ubuntu/ precise/main gpgv i386 1.4.11-3ubuntu2 [179 kB]
Get:81 http://ftpmaster.internal/ubuntu/ precise/main gnupg i386 1.4.11-3ubuntu2 [790 kB]
Get:82 http://ftpmaster.internal/ubuntu/ precise/main ubuntu-keyring i386 2011.11.21 [11.4 kB]
Get:83 http://ftpmaster.internal/ubuntu/ precise/main multiarch-support i386 2.13-23ubuntu1 [4476 B]
Get:84 http://ftpmaster.internal/ubuntu/ precise/main busybox-initramfs i386 1:1.18.5-1ubuntu2 [173 kB]
Get:85 http://ftpmaster.internal/ubuntu/ precise/main iproute i386 20111117-1 [441 kB]
Get:86 http://ftpmaster.internal/ubuntu/ precise/main sysvinit-utils i386 2.88dsf-13.10ubuntu8 [59.8 kB]
Get:87 http://ftpmaster.internal/ubuntu/ precise/main sysv-rc all 2.88dsf-13.10ubuntu8 [44.0 kB]
Get:88 http://ftpmaster.internal/ubuntu/ precise/main initscripts i386 2.88dsf-13.10ubuntu8 [27.4 kB]
Get:89 http://ftpmaster.internal/ubuntu/ precise/main ifupdown i386 0.7~alpha5.1ubuntu6 [47.1 kB]
Get:90 http://ftpmaster.internal/ubuntu/ precise/main initramfs-tools i386 0.99ubuntu9 [48.6 kB]
Get:91 http://ftpmaster.internal/ubuntu/ precise/main initramfs-tools-bin i386 0.99ubuntu9 [11.8 kB]
Get:92 http://ftpmaster.internal/ubuntu/ precise/main klibc-utils i386 1.5.25-1ubuntu1 [160 kB]
Get:93 http://ftpmaster.internal/ubuntu/ precise/main libklibc i386 1.5.25-1ubuntu1 [46.4 kB]
Get:94 http://ftpmaster.internal/ubuntu/ precise/main procps i386 1:3.2.8-11ubuntu6 [225 kB]
Get:95 http://ftpmaster.internal/ubuntu/ precise/main udev i386 175-0ubuntu3 [348 kB]
Get:96 http://ftpmaster.internal/ubuntu/ precise/main locales all 2.13+git20111116-1 [3349 kB]
Get:97 http://ftpmaster.internal/ubuntu/ precise/main cpp i386 4:4.6.2-2ubuntu1 [27.8 kB]
Get:98 http://ftpmaster.internal/ubuntu/ precise/main dpkg-dev i386 1.16.1.2ubuntu5 [468 kB]
Get:99 http://ftpmaster.internal/ubuntu/ precise/main libdpkg-perl i386 1.16.1.2ubuntu5 [181 kB]
Get:100 http://ftpmaster.internal/ubuntu/ precise/main fakeroot i386 1.18.2-1 [87.9 kB]
Get:101 http://ftpmaster.internal/ubuntu/ precise/main gcc i386 4:4.6.2-2ubuntu1 [5120 B]
Get:102 http://ftpmaster.internal/ubuntu/ precise/main g++ i386 4:4.6.2-2ubuntu1 [1440 B]
Get:103 http://ftpmaster.internal/ubuntu/ precise/main pkg-create-dbgsym all 0.50 [8334 B]
Get:104 http://ftpmaster.internal/ubuntu/ precise/main pkgbinarymangler all 110 [29.1 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 65.6 MB in 3s (18.3 MB/s)
(Reading database ... 14144 files and directories currently installed.)
Preparing to replace base-files 6.5ubuntu2 (using .../base-files_6.5ubuntu3_i386.deb) ...
Unpacking replacement base-files ...
Setting up base-files (6.5ubuntu3) ...
(Reading database ... 14144 files and directories currently installed.)
Preparing to replace debianutils 4.0.4 (using .../debianutils_4.1_i386.deb) ...
Unpacking replacement debianutils ...
Setting up debianutils (4.1) ...
(Reading database ... 14144 files and directories currently installed.)
Preparing to replace bash 4.2-0ubuntu4 (using .../bash_4.2-1ubuntu1_i386.deb) ...
Unpacking replacement bash ...
Setting up bash (4.2-1ubuntu1) ...
Installing new version of config file /etc/skel/.bashrc ...
update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode.
(Reading database ... 14145 files and directories currently installed.)
Preparing to replace libc-dev-bin 2.13-20ubuntu5 (using .../libc-dev-bin_2.13-23ubuntu1_i386.deb) ...
Unpacking replacement libc-dev-bin ...
Preparing to replace libc6-dev 2.13-20ubuntu5 (using .../libc6-dev_2.13-23ubuntu1_i386.deb) ...
Unpacking replacement libc6-dev ...
Preparing to replace libc-bin 2.13-20ubuntu5 (using .../libc-bin_2.13-23ubuntu1_i386.deb) ...
Unpacking replacement libc-bin ...
Setting up libc-bin (2.13-23ubuntu1) ...
(Reading database ... 14145 files and directories currently installed.)
Preparing to replace libc6 2.13-20ubuntu5 (using .../libc6_2.13-23ubuntu1_i386.deb) ...
Unpacking replacement libc6 ...
Setting up libc6 (2.13-23ubuntu1) ...
Processing triggers for libc-bin ...
ldconfig deferred processing now taking place
(Reading database ... 14145 files and directories currently installed.)
Preparing to replace linux-libc-dev 3.1.0-2.3 (using .../linux-libc-dev_3.2.0-7.13_i386.deb) ...
Unpacking replacement linux-libc-dev ...
Preparing to replace libgomp1 4.6.2-2ubuntu1 (using .../libgomp1_4.6.2-9ubuntu1_i386.deb) ...
Unpacking replacement libgomp1 ...
Preparing to replace gcc-4.6-base 4.6.2-2ubuntu1 (using .../gcc-4.6-base_4.6.2-9ubuntu1_i386.deb) ...
Unpacking replacement gcc-4.6-base ...
Setting up gcc-4.6-base (4.6.2-9ubuntu1) ...
(Reading database ... 14146 files and directories currently installed.)
Preparing to replace libgcc1 1:4.6.2-2ubuntu1 (using .../libgcc1_1%3a4.6.2-9ubuntu1_i386.deb) ...
Unpacking replacement libgcc1 ...
Setting up libgcc1 (1:4.6.2-9ubuntu1) ...
Processing triggers for libc-bin ...
ldconfig deferred processing now taking place
(Reading database ... 14146 files and directories currently installed.)
Preparing to replace cpp-4.6 4.6.2-2ubuntu1 (using .../cpp-4.6_4.6.2-9ubuntu1_i386.deb) ...
Unpacking replacement cpp-4.6 ...
Preparing to replace libquadmath0 4.6.2-2ubuntu1 (using .../libquadmath0_4.6.2-9ubuntu1_i386.deb) ...
Unpacking replacement libquadmath0 ...
Preparing to replace libstdc++6-4.6-dev 4.6.2-2ubuntu1 (using .../libstdc++6-4.6-dev_4.6.2-9ubuntu1_i386.deb) ...
Unpacking replacement libstdc++6-4.6-dev ...
Preparing to replace g++-4.6 4.6.2-2ubuntu1 (using .../g++-4.6_4.6.2-9ubuntu1_i386.deb) ...
Unpacking replacement g++-4.6 ...
Preparing to replace gcc-4.6 4.6.2-2ubuntu1 (using .../gcc-4.6_4.6.2-9ubuntu1_i386.deb) ...
Unpacking replacement gcc-4.6 ...
Preparing to replace libstdc++6 4.6.2-2ubuntu1 (using .../libstdc++6_4.6.2-9ubuntu1_i386.deb) ...
Unpacking replacement libstdc++6 ...
Setting up libstdc++6 (4.6.2-9ubuntu1) ...
Processing triggers for libc-bin ...
ldconfig deferred processing now taking place
(Reading database ... 14144 files and directories currently installed.)
Preparing to replace libgmp10 2:5.0.2+dfsg-1ubuntu1 (using .../libgmp10_2%3a5.0.2+dfsg-2ubuntu1_i386.deb) ...
Unpacking replacement libgmp10 ...
Preparing to replace libmpfr4 3.1.0-2 (using .../libmpfr4_3.1.0-3_i386.deb) ...
Unpacking replacement libmpfr4 ...
Preparing to replace binutils 2.21.90.20111025-1ubuntu1 (using .../binutils_2.22-2ubuntu1_i386.deb) ...
Unpacking replacement binutils ...
Preparing to replace libattr1 1:2.4.46-3 (using .../libattr1_1%3a2.4.46-5ubuntu1_i386.deb) ...
Unpacking replacement libattr1 ...
Setting up libattr1 (1:2.4.46-5ubuntu1) ...
Processing triggers for libc-bin ...
ldconfig deferred processing now taking place
(Reading database ... 14144 files and directories currently installed.)
Preparing to replace libacl1 2.2.51-3 (using .../libacl1_2.2.51-5ubuntu1_i386.deb) ...
Unpacking replacement libacl1 ...
Setting up libacl1 (2.2.51-5ubuntu1) ...
Processing triggers for libc-bin ...
ldconfig deferred processing now taking place
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Preparing to replace dpkg 1.16.1.1ubuntu3 (using .../dpkg_1.16.1.2ubuntu5_i386.deb) ...
Unpacking replacement dpkg ...
Setting up dpkg (1.16.1.2ubuntu5) ...
(Reading database ... 14144 files and directories currently installed.)
Preparing to replace coreutils 8.13-3ubuntu1 (using .../coreutils_8.13-3ubuntu2_i386.deb) ...
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Setting up coreutils (8.13-3ubuntu2) ...
(Reading database ... 14144 files and directories currently installed.)
Preparing to replace grep 2.9-2 (using .../archives/grep_2.10-1_i386.deb) ...
Unpacking replacement grep ...
Setting up grep (2.10-1) ...
(Reading database ... 14144 files and directories currently installed.)
Preparing to replace login 1:4.1.4.2+svn3283-3ubuntu2 (using .../login_1%3a4.1.4.2+svn3283-3ubuntu3_i386.deb) ...
Unpacking replacement login ...
Setting up login (1:4.1.4.2+svn3283-3ubuntu3) ...
Installing new version of config file /etc/securetty ...
(Reading database ... 14144 files and directories currently installed.)
Preparing to replace libselinux1 2.1.0-1 (using .../libselinux1_2.1.0-4ubuntu1_i386.deb) ...
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gpg: key 437D05B5: "Ubuntu Archive Automatic Signing Key <ftpmaster@ubuntu.com>" not changed
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gpg: Total number processed: 2
gpg:              unchanged: 2
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guest environment detected: Linking /run/shm to /dev/shm
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invoke-rc.d: policy-rc.d denied execution of restart.
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RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'e73971f7dea06baee2bbf27a58dd38619e2f7212', 'i386', 'precise', '--nolog', '--batch', '--archive=ubuntu', '--dist=precise', '-A', '--purpose=PRIMARY', '--architecture=i386', '--comp=universe', 'r-base_2.14.1-1.dsc']
Initiating build e73971f7dea06baee2bbf27a58dd38619e2f7212 with 8 processor cores.
Automatic build of r-base_2.14.1-1 on roseapple by sbuild/i386 1.170.5
Build started at 20120101-0844
******************************************************************************
r-base_2.14.1-1.dsc exists in cwd
** Using build dependencies supplied by package:
Build-Depends: gcc (>= 4:4.1.0), g++ (>= 4:4.1.0), gfortran (>= 4:4.1.0), libblas-dev, liblapack-dev (>= 3.1.1), tcl8.5-dev, tk8.5-dev, bison, groff-base, libncurses5-dev, libreadline-dev, debhelper (>= 7.2.3), texi2html, texinfo (>= 4.1-2), libbz2-dev, liblzma-dev, libpcre3-dev, xdg-utils, zlib1g-dev, libpng12-dev, libjpeg-dev, libx11-dev, libxt-dev, x11proto-core-dev, libpango1.0-dev, libcairo2-dev, libtiff4-dev, xvfb, xauth, xfonts-base, texlive-base, texlive-latex-base, texlive-generic-recommended, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, openjdk-6-jdk [!arm !hppa !kfreebsd-i386 !kfreebsd-amd64 !hurd-i386 !mips]
Checking for already installed source dependencies...
gcc: already installed (4:4.6.2-2ubuntu1 >= 4:4.1.0 is satisfied)
g++: already installed (4:4.6.2-2ubuntu1 >= 4:4.1.0 is satisfied)
gfortran: missing
libblas-dev: missing
liblapack-dev: missing
tcl8.5-dev: missing
tk8.5-dev: missing
bison: missing
groff-base: missing
libncurses5-dev: missing
libreadline-dev: missing
debhelper: missing
texi2html: missing
texinfo: missing
libbz2-dev: missing
liblzma-dev: missing
libpcre3-dev: missing
xdg-utils: missing
zlib1g-dev: missing
libpng12-dev: missing
libjpeg-dev: missing
libx11-dev: missing
libxt-dev: missing
x11proto-core-dev: missing
libpango1.0-dev: missing
libcairo2-dev: missing
libtiff4-dev: missing
xvfb: missing
xauth: missing
xfonts-base: missing
texlive-base: missing
texlive-latex-base: missing
texlive-generic-recommended: missing
texlive-fonts-recommended: missing
texlive-fonts-extra: missing
texlive-extra-utils: missing
texlive-latex-recommended: missing
texlive-latex-extra: missing
openjdk-6-jdk: missing
Checking for source dependency conflicts...
  /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install gfortran libblas-dev liblapack-dev tcl8.5-dev tk8.5-dev bison groff-base libncurses5-dev libreadline-dev debhelper texi2html texinfo libbz2-dev liblzma-dev libpcre3-dev xdg-utils zlib1g-dev libpng12-dev libjpeg-dev libx11-dev libxt-dev x11proto-core-dev libpango1.0-dev libcairo2-dev libtiff4-dev xvfb xauth xfonts-base texlive-base texlive-latex-base texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra openjdk-6-jdk
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
  bsdmainutils ca-certificates-java ed file fontconfig fontconfig-config
  gettext gettext-base gfortran-4.6 gir1.2-freedesktop gir1.2-glib-2.0
  gir1.2-pango-1.0 html2text intltool-debian java-common libaccess-bridge-java
  libaccess-bridge-java-jni libasound2 libasyncns0 libavahi-client3
  libavahi-common-data libavahi-common3 libbison-dev libblas3gf
  libcairo-gobject2 libcairo-script-interpreter2 libcairo2 libcroco3 libcups2
  libdatrie1 libdb4.8 libexpat1 libexpat1-dev libflac8 libfontconfig1
  libfontconfig1-dev libfontenc1 libfreetype6 libfreetype6-dev libgettextpo0
  libgfortran3 libgif4 libgirepository-1.0-1 libglib2.0-bin libglib2.0-data
  libglib2.0-dev libice-dev libice6 libjpeg-turbo8 libjpeg8 libjson0
  libkpathsea5 liblapack3gf liblcms1 libmagic1 libnspr4 libnss3 libnss3-1d
  libogg0 libpango1.0-0 libpaper-utils libpaper1 libpcrecpp0 libpipeline1
  libpixman-1-0 libpixman-1-dev libpoppler19 libpopt0 libpthread-stubs0
  libpthread-stubs0-dev libpulse0 libreadline6-dev libsm-dev libsm6
  libsndfile1 libthai-data libthai0 libtiff4 libtiffxx0c2 libtinfo-dev
  libunistring0 libvorbis0a libvorbisenc2 libwrap0 libx11-6 libx11-data
  libxau-dev libxau6 libxaw7 libxcb-render0 libxcb-render0-dev libxcb-shm0
  libxcb-shm0-dev libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev
  libxext6 libxfont1 libxft-dev libxft2 libxi6 libxkbfile1 libxml2 libxmu6
  libxmuu1 libxpm4 libxrender-dev libxrender1 libxss-dev libxss1 libxt6
  libxtst6 luatex m4 man-db mime-support openjdk-6-jre openjdk-6-jre-headless
  openjdk-6-jre-lib pkg-config po-debconf preview-latex-style python python2.7
  tcl8.5 tex-common texlive-binaries texlive-common texlive-doc-base
  texlive-pictures tk8.5 ttf-dejavu-core tzdata-java ucf x11-common
  x11-xkb-utils x11proto-input-dev x11proto-kb-dev x11proto-render-dev
  x11proto-scrnsaver-dev x11proto-xext-dev xfonts-encodings xfonts-utils
  xkb-data xorg-sgml-doctools xserver-common xtrans-dev
Suggested packages:
  bison-doc wamerican wordlist whois vacation dh-make defoma gettext-doc
  gfortran-multilib gfortran-doc gfortran-4.6-multilib gfortran-4.6-doc
  libgfortran3-dbg groff default-jre equivs libasound2-plugins
  libasound2-python libcairo2-doc cups-common libglib2.0-doc liblcms-utils
  liblzma-doc ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp
  ttf-arphic-gkai00mp ttf-arphic-bkai00mp libpango1.0-doc imagemagick
  poppler-data pulseaudio less www-browser openjdk-6-demo openjdk-6-source
  visualvm icedtea-plugin libnss-mdns sun-java6-fonts ttf-sazanami-gothic
  ttf-kochi-gothic ttf-sazanami-mincho ttf-kochi-mincho ttf-wqy-microhei
  ttf-wqy-zenhei ttf-indic-fonts-core ttf-telugu-fonts ttf-oriya-fonts
  ttf-kannada-fonts ttf-bengali-fonts libmail-box-perl python-doc python-tk
  python2.7-doc tclreadline tcl8.5-doc latex2html texinfo-doc-nonfree perl-tk
  ghostscript xpdf-reader pdf-viewer gv postscript-viewer dvidvi fragmaster
  latexmk purifyeps xindy cm-super texpower dot2tex tk8.5-doc gvfs-bin xfs
  xserver
Recommended packages:
  curl wget lynx-cur x-ttcidfont-conf tcpd libx11-doc xml-core texlive-luatex
  ttf-dejavu-extra icedtea-netx icedtea-6-jre-cacao icedtea-6-jre-jamvm
  libmail-sendmail-perl doc-base lmodern lacheck texlive-fonts-extra-doc
  texlive-fonts-recommended-doc tipa texlive-latex-base-doc
  texlive-latex-extra-doc texlive-latex-recommended-doc prosper latex-beamer
  latex-xcolor texlive-pictures-doc pgf xterm x-terminal-emulator
  libfile-mimeinfo-perl x11-utils x11-xserver-utils libgl1-mesa-dri
The following NEW packages will be installed:
  bison bsdmainutils ca-certificates-java debhelper ed file fontconfig
  fontconfig-config gettext gettext-base gfortran gfortran-4.6
  gir1.2-freedesktop gir1.2-glib-2.0 gir1.2-pango-1.0 groff-base html2text
  intltool-debian java-common libaccess-bridge-java libaccess-bridge-java-jni
  libasound2 libasyncns0 libavahi-client3 libavahi-common-data
  libavahi-common3 libbison-dev libblas-dev libblas3gf libbz2-dev
  libcairo-gobject2 libcairo-script-interpreter2 libcairo2 libcairo2-dev
  libcroco3 libcups2 libdatrie1 libdb4.8 libexpat1 libexpat1-dev libflac8
  libfontconfig1 libfontconfig1-dev libfontenc1 libfreetype6 libfreetype6-dev
  libgettextpo0 libgfortran3 libgif4 libgirepository-1.0-1 libglib2.0-bin
  libglib2.0-data libglib2.0-dev libice-dev libice6 libjpeg-turbo8
  libjpeg-turbo8-dev libjpeg8 libjson0 libkpathsea5 liblapack-dev liblapack3gf
  liblcms1 liblzma-dev libmagic1 libncurses5-dev libnspr4 libnss3 libnss3-1d
  libogg0 libpango1.0-0 libpango1.0-dev libpaper-utils libpaper1 libpcre3-dev
  libpcrecpp0 libpipeline1 libpixman-1-0 libpixman-1-dev libpng12-dev
  libpoppler19 libpopt0 libpthread-stubs0 libpthread-stubs0-dev libpulse0
  libreadline-dev libreadline6-dev libsm-dev libsm6 libsndfile1 libthai-data
  libthai0 libtiff4 libtiff4-dev libtiffxx0c2 libtinfo-dev libunistring0
  libvorbis0a libvorbisenc2 libwrap0 libx11-6 libx11-data libx11-dev
  libxau-dev libxau6 libxaw7 libxcb-render0 libxcb-render0-dev libxcb-shm0
  libxcb-shm0-dev libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev
  libxext6 libxfont1 libxft-dev libxft2 libxi6 libxkbfile1 libxml2 libxmu6
  libxmuu1 libxpm4 libxrender-dev libxrender1 libxss-dev libxss1 libxt-dev
  libxt6 libxtst6 luatex m4 man-db mime-support openjdk-6-jdk openjdk-6-jre
  openjdk-6-jre-headless openjdk-6-jre-lib pkg-config po-debconf
  preview-latex-style python python2.7 tcl8.5 tcl8.5-dev tex-common texi2html
  texinfo texlive-base texlive-binaries texlive-common texlive-doc-base
  texlive-extra-utils texlive-fonts-extra texlive-fonts-recommended
  texlive-generic-recommended texlive-latex-base texlive-latex-extra
  texlive-latex-recommended texlive-pictures tk8.5 tk8.5-dev ttf-dejavu-core
  tzdata-java ucf x11-common x11-xkb-utils x11proto-core-dev
  x11proto-input-dev x11proto-kb-dev x11proto-render-dev
  x11proto-scrnsaver-dev x11proto-xext-dev xauth xdg-utils xfonts-base
  xfonts-encodings xfonts-utils xkb-data xorg-sgml-doctools xserver-common
  xtrans-dev xvfb zlib1g-dev
0 upgraded, 186 newly installed, 0 to remove and 0 not upgraded.
Need to get 236 MB of archives.
After this operation, 660 MB of additional disk space will be used.
WARNING: The following packages cannot be authenticated!
  libdb4.8 libexpat1 libpopt0 libpipeline1 libxau6 libxdmcp6 libxcb1
  libx11-data libx11-6 libxext6 libxml2 libxmuu1 libaccess-bridge-java
  libaccess-bridge-java-jni libasound2 libasyncns0 libavahi-common-data
  libavahi-common3 libavahi-client3 libfreetype6 ucf ttf-dejavu-core
  fontconfig-config libfontconfig1 libpixman-1-0 libxcb-render0 libxcb-shm0
  libxrender1 libcairo2 libcairo-gobject2 libcairo-script-interpreter2
  libcroco3 libcups2 libdatrie1 libogg0 libflac8 libunistring0 libgettextpo0
  libgfortran3 x11-common libice6 libjpeg-turbo8 liblcms1 libnspr4 libnss3
  libthai-data libthai0 libxft2 fontconfig libpango1.0-0 libpcrecpp0 libjson0
  libvorbis0a libvorbisenc2 libsndfile1 libwrap0 libpulse0 libsm6 libjpeg8
  libtiff4 libtiffxx0c2 libxt6 libxmu6 libxpm4 libxaw7 libxi6 libxss1 libxtst6
  openjdk-6-jre-lib libnss3-1d ca-certificates-java tzdata-java java-common
  openjdk-6-jre-headless libmagic1 file mime-support python2.7 python xkb-data
  bsdmainutils ed gettext-base libgirepository-1.0-1 gir1.2-glib-2.0
  groff-base man-db xauth m4 libbison-dev bison html2text gettext
  intltool-debian po-debconf debhelper gfortran-4.6 gfortran
  gir1.2-freedesktop gir1.2-pango-1.0 libblas3gf libblas-dev libbz2-dev
  libexpat1-dev zlib1g-dev libfreetype6-dev pkg-config libfontconfig1-dev
  xorg-sgml-doctools x11proto-core-dev libxau-dev libxdmcp-dev
  x11proto-input-dev x11proto-kb-dev xtrans-dev libpthread-stubs0
  libpthread-stubs0-dev libxcb1-dev libx11-dev x11proto-render-dev
  libxrender-dev libpng12-dev libice-dev libsm-dev libpixman-1-dev
  libxcb-render0-dev libxcb-shm0-dev libglib2.0-data libglib2.0-bin
  libpcre3-dev libglib2.0-dev libcairo2-dev libfontenc1 libgif4
  libjpeg-turbo8-dev libkpathsea5 liblapack3gf liblapack-dev libtinfo-dev
  libncurses5-dev libxft-dev libpango1.0-dev libpaper1 libpaper-utils
  libpoppler19 libreadline6-dev libreadline-dev libtiff4-dev x11proto-xext-dev
  libxext-dev libxfont1 libxkbfile1 x11proto-scrnsaver-dev libxss-dev
  libxt-dev luatex openjdk-6-jre openjdk-6-jdk tex-common preview-latex-style
  tcl8.5 tcl8.5-dev texi2html texinfo texlive-common texlive-doc-base
  texlive-binaries texlive-base texlive-extra-utils texlive-fonts-extra
  texlive-fonts-recommended texlive-generic-recommended texlive-latex-base
  texlive-pictures texlive-latex-extra texlive-latex-recommended tk8.5
  tk8.5-dev x11-xkb-utils xdg-utils xfonts-encodings xfonts-utils xfonts-base
  xserver-common xvfb liblzma-dev
Authentication warning overridden.
Get:1 http://ftpmaster.internal/ubuntu/ precise/main libdb4.8 i386 4.8.30-11 [711 kB]
Get:2 http://ftpmaster.internal/ubuntu/ precise/main libexpat1 i386 2.0.1-7.2 [130 kB]
Get:3 http://ftpmaster.internal/ubuntu/ precise/main libpopt0 i386 1.16-1ubuntu1 [29.0 kB]
Get:4 http://ftpmaster.internal/ubuntu/ precise/main libpipeline1 i386 1.2.0-5 [25.7 kB]
Get:5 http://ftpmaster.internal/ubuntu/ precise/main libxau6 i386 1:1.0.6-4 [8344 B]
Get:6 http://ftpmaster.internal/ubuntu/ precise/main libxdmcp6 i386 1:1.1.0-4 [13.0 kB]
Get:7 http://ftpmaster.internal/ubuntu/ precise/main libxcb1 i386 1.7-4 [44.2 kB]
Get:8 http://ftpmaster.internal/ubuntu/ precise/main libx11-data i386 2:1.4.4-4 [172 kB]
Get:9 http://ftpmaster.internal/ubuntu/ precise/main libx11-6 i386 2:1.4.4-4 [772 kB]
Get:10 http://ftpmaster.internal/ubuntu/ precise/main libxext6 i386 2:1.3.0-3 [34.8 kB]
Get:11 http://ftpmaster.internal/ubuntu/ precise/main libxml2 i386 2.7.8.dfsg-5ubuntu1 [662 kB]
Get:12 http://ftpmaster.internal/ubuntu/ precise/main libxmuu1 i386 2:1.1.0-3 [10.9 kB]
Get:13 http://ftpmaster.internal/ubuntu/ precise/main libaccess-bridge-java all 1.26.2-8 [410 kB]
Get:14 http://ftpmaster.internal/ubuntu/ precise/main libaccess-bridge-java-jni i386 1.26.2-8 [5118 B]
Get:15 http://ftpmaster.internal/ubuntu/ precise/main libasound2 i386 1.0.24.1-4ubuntu1 [419 kB]
Get:16 http://ftpmaster.internal/ubuntu/ precise/main libasyncns0 i386 0.8-4 [12.9 kB]
Get:17 http://ftpmaster.internal/ubuntu/ precise/main libavahi-common-data i386 0.6.30-5ubuntu2 [22.2 kB]
Get:18 http://ftpmaster.internal/ubuntu/ precise/main libavahi-common3 i386 0.6.30-5ubuntu2 [26.0 kB]
Get:19 http://ftpmaster.internal/ubuntu/ precise/main libavahi-client3 i386 0.6.30-5ubuntu2 [30.0 kB]
Get:20 http://ftpmaster.internal/ubuntu/ precise/main libfreetype6 i386 2.4.8-1 [344 kB]
Get:21 http://ftpmaster.internal/ubuntu/ precise/main ucf all 3.0025+nmu2ubuntu1 [54.4 kB]
Get:22 http://ftpmaster.internal/ubuntu/ precise/main ttf-dejavu-core i386 2.33-2 [1550 kB]
Get:23 http://ftpmaster.internal/ubuntu/ precise/main fontconfig-config i386 2.8.0-3ubuntu2 [44.5 kB]
Get:24 http://ftpmaster.internal/ubuntu/ precise/main libfontconfig1 i386 2.8.0-3ubuntu2 [125 kB]
Get:25 http://ftpmaster.internal/ubuntu/ precise/main libpixman-1-0 i386 0.24.0-1 [243 kB]
Get:26 http://ftpmaster.internal/ubuntu/ precise/main libxcb-render0 i386 1.7-4 [12.8 kB]
Get:27 http://ftpmaster.internal/ubuntu/ precise/main libxcb-shm0 i386 1.7-4 [5650 B]
Get:28 http://ftpmaster.internal/ubuntu/ precise/main libxrender1 i386 1:0.9.6-2 [20.4 kB]
Get:29 http://ftpmaster.internal/ubuntu/ precise/main libcairo2 i386 1.10.2-6.1ubuntu2 [490 kB]
Get:30 http://ftpmaster.internal/ubuntu/ precise/main libcairo-gobject2 i386 1.10.2-6.1ubuntu2 [19.5 kB]
Get:31 http://ftpmaster.internal/ubuntu/ precise/main libcairo-script-interpreter2 i386 1.10.2-6.1ubuntu2 [62.6 kB]
Get:32 http://ftpmaster.internal/ubuntu/ precise/main libcroco3 i386 0.6.2-2 [100 kB]
Get:33 http://ftpmaster.internal/ubuntu/ precise/main libcups2 i386 1.5.0-13bzr1 [175 kB]
Get:34 http://ftpmaster.internal/ubuntu/ precise/main libdatrie1 i386 0.2.5-2 [17.0 kB]
Get:35 http://ftpmaster.internal/ubuntu/ precise/main libogg0 i386 1.2.2~dfsg-1ubuntu1 [17.6 kB]
Get:36 http://ftpmaster.internal/ubuntu/ precise/main libflac8 i386 1.2.1-6 [142 kB]
Get:37 http://ftpmaster.internal/ubuntu/ precise/main libunistring0 i386 0.9.3-5 [432 kB]
Get:38 http://ftpmaster.internal/ubuntu/ precise/main libgettextpo0 i386 0.18.1.1-5ubuntu3 [118 kB]
Get:39 http://ftpmaster.internal/ubuntu/ precise/main libgfortran3 i386 4.6.2-9ubuntu1 [355 kB]
Get:40 http://ftpmaster.internal/ubuntu/ precise/main x11-common i386 1:7.6+7ubuntu7 [56.6 kB]
Get:41 http://ftpmaster.internal/ubuntu/ precise/main libice6 i386 2:1.0.7-2 [44.8 kB]
Get:42 http://ftpmaster.internal/ubuntu/ precise/main libjpeg-turbo8 i386 1.1.90+svn733-0ubuntu3 [116 kB]
Get:43 http://ftpmaster.internal/ubuntu/ precise/main liblcms1 i386 1.19.dfsg-1ubuntu3 [109 kB]
Get:44 http://ftpmaster.internal/ubuntu/ precise/main libnspr4 i386 4.8.9-1ubuntu2 [142 kB]
Get:45 http://ftpmaster.internal/ubuntu/ precise/main libnss3 i386 3.13.1.with.ckbi.1.88-1ubuntu2 [1215 kB]
Get:46 http://ftpmaster.internal/ubuntu/ precise/main libthai-data i386 0.1.16-2 [178 kB]
Get:47 http://ftpmaster.internal/ubuntu/ precise/main libthai0 i386 0.1.16-2 [20.2 kB]
Get:48 http://ftpmaster.internal/ubuntu/ precise/main libxft2 i386 2.2.0-3ubuntu1 [42.4 kB]
Get:49 http://ftpmaster.internal/ubuntu/ precise/main fontconfig i386 2.8.0-3ubuntu2 [157 kB]
Get:50 http://ftpmaster.internal/ubuntu/ precise/main libpango1.0-0 i386 1.29.4-2ubuntu1 [365 kB]
Get:51 http://ftpmaster.internal/ubuntu/ precise/main libpcrecpp0 i386 8.12-4 [16.6 kB]
Get:52 http://ftpmaster.internal/ubuntu/ precise/main libjson0 i386 0.9-1ubuntu1 [16.7 kB]
Get:53 http://ftpmaster.internal/ubuntu/ precise/main libvorbis0a i386 1.3.2-1ubuntu2 [99.4 kB]
Get:54 http://ftpmaster.internal/ubuntu/ precise/main libvorbisenc2 i386 1.3.2-1ubuntu2 [115 kB]
Get:55 http://ftpmaster.internal/ubuntu/ precise/main libsndfile1 i386 1.0.25-3 [180 kB]
Get:56 http://ftpmaster.internal/ubuntu/ precise/main libwrap0 i386 7.6.q-21 [49.7 kB]
Get:57 http://ftpmaster.internal/ubuntu/ precise/main libpulse0 i386 1:1.1-0ubuntu4 [280 kB]
Get:58 http://ftpmaster.internal/ubuntu/ precise/main libsm6 i386 2:1.2.0-2 [17.6 kB]
Get:59 http://ftpmaster.internal/ubuntu/ precise/main libjpeg8 i386 8c-2ubuntu6 [1948 B]
Get:60 http://ftpmaster.internal/ubuntu/ precise/main libtiff4 i386 3.9.5-2 [142 kB]
Get:61 http://ftpmaster.internal/ubuntu/ precise/main libtiffxx0c2 i386 3.9.5-2 [6762 B]
Get:62 http://ftpmaster.internal/ubuntu/ precise/main libxt6 i386 1:1.1.1-2 [180 kB]
Get:63 http://ftpmaster.internal/ubuntu/ precise/main libxmu6 i386 2:1.1.0-3 [52.4 kB]
Get:64 http://ftpmaster.internal/ubuntu/ precise/main libxpm4 i386 1:3.5.9-4 [37.4 kB]
Get:65 http://ftpmaster.internal/ubuntu/ precise/main libxaw7 i386 2:1.0.9-3 [201 kB]
Get:66 http://ftpmaster.internal/ubuntu/ precise/main libxi6 i386 2:1.4.3-3ubuntu1 [31.2 kB]
Get:67 http://ftpmaster.internal/ubuntu/ precise/main libxss1 i386 1:1.2.1-2 [8604 B]
Get:68 http://ftpmaster.internal/ubuntu/ precise/main libxtst6 i386 2:1.2.0-4 [14.2 kB]
Get:69 http://ftpmaster.internal/ubuntu/ precise/main openjdk-6-jre-lib i386 6b24~pre2-0ubuntu2 [6134 kB]
Get:70 http://ftpmaster.internal/ubuntu/ precise/main libnss3-1d i386 3.13.1.with.ckbi.1.88-1ubuntu2 [13.4 kB]
Get:71 http://ftpmaster.internal/ubuntu/ precise/main ca-certificates-java i386 20110912ubuntu4 [8080 B]
Get:72 http://ftpmaster.internal/ubuntu/ precise/main tzdata-java i386 2011n-1 [134 kB]
Get:73 http://ftpmaster.internal/ubuntu/ precise/main java-common i386 0.43ubuntu2 [61.7 kB]
Get:74 http://ftpmaster.internal/ubuntu/ precise/main openjdk-6-jre-headless i386 6b24~pre2-0ubuntu2 [27.3 MB]
Get:75 http://ftpmaster.internal/ubuntu/ precise/main libmagic1 i386 5.09-2 [219 kB]
Get:76 http://ftpmaster.internal/ubuntu/ precise/main file i386 5.09-2 [19.4 kB]
Get:77 http://ftpmaster.internal/ubuntu/ precise/main mime-support all 3.51-1ubuntu1 [30.7 kB]
Get:78 http://ftpmaster.internal/ubuntu/ precise/main python2.7 i386 2.7.2-9 [2574 kB]
Get:79 http://ftpmaster.internal/ubuntu/ precise/main python all 2.7.2-9ubuntu2 [168 kB]
Get:80 http://ftpmaster.internal/ubuntu/ precise/main xkb-data all 2.3-1ubuntu2 [456 kB]
Get:81 http://ftpmaster.internal/ubuntu/ precise/main bsdmainutils i386 8.2.3 [196 kB]
Get:82 http://ftpmaster.internal/ubuntu/ precise/main ed i386 1.5-3 [56.1 kB]
Get:83 http://ftpmaster.internal/ubuntu/ precise/main gettext-base i386 0.18.1.1-5ubuntu3 [58.2 kB]
Get:84 http://ftpmaster.internal/ubuntu/ precise/main libgirepository-1.0-1 i386 1.31.1-1 [103 kB]
Get:85 http://ftpmaster.internal/ubuntu/ precise/main gir1.2-glib-2.0 i386 1.31.1-1 [154 kB]
Get:86 http://ftpmaster.internal/ubuntu/ precise/main groff-base i386 1.21-6 [1024 kB]
Get:87 http://ftpmaster.internal/ubuntu/ precise/main man-db i386 2.6.0.2-3 [721 kB]
Get:88 http://ftpmaster.internal/ubuntu/ precise/main xauth i386 1:1.0.6-1 [25.2 kB]
Get:89 http://ftpmaster.internal/ubuntu/ precise/main m4 i386 1.4.16-2ubuntu1 [195 kB]
Get:90 http://ftpmaster.internal/ubuntu/ precise/main libbison-dev i386 1:2.5.dfsg-2ubuntu1 [33.3 kB]
Get:91 http://ftpmaster.internal/ubuntu/ precise/main bison i386 1:2.5.dfsg-2ubuntu1 [275 kB]
Get:92 http://ftpmaster.internal/ubuntu/ precise/main html2text i386 1.3.2a-15 [101 kB]
Get:93 http://ftpmaster.internal/ubuntu/ precise/main gettext i386 0.18.1.1-5ubuntu3 [1122 kB]
Get:94 http://ftpmaster.internal/ubuntu/ precise/main intltool-debian all 0.35.0+20060710.1 [31.6 kB]
Get:95 http://ftpmaster.internal/ubuntu/ precise/main po-debconf i386 1.0.16+nmu1ubuntu1 [211 kB]
Get:96 http://ftpmaster.internal/ubuntu/ precise/main debhelper i386 8.9.9ubuntu1 [477 kB]
Get:97 http://ftpmaster.internal/ubuntu/ precise/main gfortran-4.6 i386 4.6.2-9ubuntu1 [5365 kB]
Get:98 http://ftpmaster.internal/ubuntu/ precise/main gfortran i386 4:4.6.2-2ubuntu1 [1198 B]
Get:99 http://ftpmaster.internal/ubuntu/ precise/main gir1.2-freedesktop i386 1.31.1-1 [6626 B]
Get:100 http://ftpmaster.internal/ubuntu/ precise/main gir1.2-pango-1.0 i386 1.29.4-2ubuntu1 [25.6 kB]
Get:101 http://ftpmaster.internal/ubuntu/ precise/main libblas3gf i386 1.2.20110419-2ubuntu1 [204 kB]
Get:102 http://ftpmaster.internal/ubuntu/ precise/main libblas-dev i386 1.2.20110419-2ubuntu1 [201 kB]
Get:103 http://ftpmaster.internal/ubuntu/ precise/main libbz2-dev i386 1.0.6-1 [31.4 kB]
Get:104 http://ftpmaster.internal/ubuntu/ precise/main libexpat1-dev i386 2.0.1-7.2 [207 kB]
Get:105 http://ftpmaster.internal/ubuntu/ precise/main zlib1g-dev i386 1:1.2.3.4.dfsg-3ubuntu4 [162 kB]
Get:106 http://ftpmaster.internal/ubuntu/ precise/main libfreetype6-dev i386 2.4.8-1 [778 kB]
Get:107 http://ftpmaster.internal/ubuntu/ precise/main pkg-config i386 0.26-1ubuntu1 [40.3 kB]
Get:108 http://ftpmaster.internal/ubuntu/ precise/main libfontconfig1-dev i386 2.8.0-3ubuntu2 [652 kB]
Get:109 http://ftpmaster.internal/ubuntu/ precise/main xorg-sgml-doctools i386 1:1.8-2 [10.9 kB]
Get:110 http://ftpmaster.internal/ubuntu/ precise/main x11proto-core-dev i386 7.0.22-1 [299 kB]
Get:111 http://ftpmaster.internal/ubuntu/ precise/main libxau-dev i386 1:1.0.6-4 [10.2 kB]
Get:112 http://ftpmaster.internal/ubuntu/ precise/main libxdmcp-dev i386 1:1.1.0-4 [26.5 kB]
Get:113 http://ftpmaster.internal/ubuntu/ precise/main x11proto-input-dev i386 2.1.99.4.really.2.0.2-0ubuntu1 [69.1 kB]
Get:114 http://ftpmaster.internal/ubuntu/ precise/main x11proto-kb-dev i386 1.0.5-2 [27.6 kB]
Get:115 http://ftpmaster.internal/ubuntu/ precise/main xtrans-dev i386 1.2.6-2 [82.9 kB]
Get:116 http://ftpmaster.internal/ubuntu/ precise/main libpthread-stubs0 i386 0.3-3 [3264 B]
Get:117 http://ftpmaster.internal/ubuntu/ precise/main libpthread-stubs0-dev i386 0.3-3 [2860 B]
Get:118 http://ftpmaster.internal/ubuntu/ precise/main libxcb1-dev i386 1.7-4 [77.8 kB]
Get:119 http://ftpmaster.internal/ubuntu/ precise/main libx11-dev i386 2:1.4.4-4 [899 kB]
Get:120 http://ftpmaster.internal/ubuntu/ precise/main x11proto-render-dev i386 2:0.11.1-2 [20.1 kB]
Get:121 http://ftpmaster.internal/ubuntu/ precise/main libxrender-dev i386 1:0.9.6-2 [27.7 kB]
Get:122 http://ftpmaster.internal/ubuntu/ precise/main libpng12-dev i386 1.2.46-3ubuntu1 [207 kB]
Get:123 http://ftpmaster.internal/ubuntu/ precise/main libice-dev i386 2:1.0.7-2 [128 kB]
Get:124 http://ftpmaster.internal/ubuntu/ precise/main libsm-dev i386 2:1.2.0-2 [86.4 kB]
Get:125 http://ftpmaster.internal/ubuntu/ precise/main libpixman-1-dev i386 0.24.0-1 [268 kB]
Get:126 http://ftpmaster.internal/ubuntu/ precise/main libxcb-render0-dev i386 1.7-4 [21.3 kB]
Get:127 http://ftpmaster.internal/ubuntu/ precise/main libxcb-shm0-dev i386 1.7-4 [8364 B]
Get:128 http://ftpmaster.internal/ubuntu/ precise/main libglib2.0-data i386 2.31.4.tested-0ubuntu3 [82.6 kB]
Get:129 http://ftpmaster.internal/ubuntu/ precise/main libglib2.0-bin i386 2.31.4.tested-0ubuntu3 [30.2 kB]
Get:130 http://ftpmaster.internal/ubuntu/ precise/main libpcre3-dev i386 8.12-4 [226 kB]
Get:131 http://ftpmaster.internal/ubuntu/ precise/main libglib2.0-dev i386 2.31.4.tested-0ubuntu3 [1690 kB]
Get:132 http://ftpmaster.internal/ubuntu/ precise/main libcairo2-dev i386 1.10.2-6.1ubuntu2 [569 kB]
Get:133 http://ftpmaster.internal/ubuntu/ precise/main libfontenc1 i386 1:1.1.0-1 [14.2 kB]
Get:134 http://ftpmaster.internal/ubuntu/ precise/main libgif4 i386 4.1.6-9 [40.0 kB]
Get:135 http://ftpmaster.internal/ubuntu/ precise/main libjpeg-turbo8-dev i386 1.1.90+svn733-0ubuntu3 [410 kB]
Get:136 http://ftpmaster.internal/ubuntu/ precise/main libkpathsea5 i386 2009-11ubuntu2 [56.5 kB]
Get:137 http://ftpmaster.internal/ubuntu/ precise/main liblapack3gf i386 3.3.1-1 [3209 kB]
Get:138 http://ftpmaster.internal/ubuntu/ precise/main liblapack-dev i386 3.3.1-1 [3445 kB]
Get:139 http://ftpmaster.internal/ubuntu/ precise/main libtinfo-dev i386 5.9-4 [93.5 kB]
Get:140 http://ftpmaster.internal/ubuntu/ precise/main libncurses5-dev i386 5.9-4 [218 kB]
Get:141 http://ftpmaster.internal/ubuntu/ precise/main libxft-dev i386 2.2.0-3ubuntu1 [51.7 kB]
Get:142 http://ftpmaster.internal/ubuntu/ precise/main libpango1.0-dev i386 1.29.4-2ubuntu1 [477 kB]
Get:143 http://ftpmaster.internal/ubuntu/ precise/main libpaper1 i386 1.1.24+nmu1 [13.9 kB]
Get:144 http://ftpmaster.internal/ubuntu/ precise/main libpaper-utils i386 1.1.24+nmu1 [8770 B]
Get:145 http://ftpmaster.internal/ubuntu/ precise/main libpoppler19 i386 0.18.2-0ubuntu2 [768 kB]
Get:146 http://ftpmaster.internal/ubuntu/ precise/main libreadline6-dev i386 6.2-8 [249 kB]
Get:147 http://ftpmaster.internal/ubuntu/ precise/main libreadline-dev i386 6.2-8 [932 B]
Get:148 http://ftpmaster.internal/ubuntu/ precise/main libtiff4-dev i386 3.9.5-2 [278 kB]
Get:149 http://ftpmaster.internal/ubuntu/ precise/main x11proto-xext-dev i386 7.2.0-3 [253 kB]
Get:150 http://ftpmaster.internal/ubuntu/ precise/main libxext-dev i386 2:1.3.0-3 [141 kB]
Get:151 http://ftpmaster.internal/ubuntu/ precise/main libxfont1 i386 1:1.4.4-1 [132 kB]
Get:152 http://ftpmaster.internal/ubuntu/ precise/main libxkbfile1 i386 1:1.0.7-1 [67.4 kB]
Get:153 http://ftpmaster.internal/ubuntu/ precise/main x11proto-scrnsaver-dev i386 1.2.1-2 [23.1 kB]
Get:154 http://ftpmaster.internal/ubuntu/ precise/main libxss-dev i386 1:1.2.1-2 [12.8 kB]
Get:155 http://ftpmaster.internal/ubuntu/ precise/main libxt-dev i386 1:1.1.1-2 [472 kB]
Get:156 http://ftpmaster.internal/ubuntu/ precise/main luatex i386 0.70.1-1ubuntu1 [2366 kB]
Get:157 http://ftpmaster.internal/ubuntu/ precise/main openjdk-6-jre i386 6b24~pre2-0ubuntu2 [232 kB]
Get:158 http://ftpmaster.internal/ubuntu/ precise/main openjdk-6-jdk i386 6b24~pre2-0ubuntu2 [11.0 MB]
Get:159 http://ftpmaster.internal/ubuntu/ precise/main tex-common all 2.10 [709 kB]
Get:160 http://ftpmaster.internal/ubuntu/ precise/main preview-latex-style all 11.86-2ubuntu1 [108 kB]
Get:161 http://ftpmaster.internal/ubuntu/ precise/main tcl8.5 i386 8.5.11-1ubuntu1 [1097 kB]
Get:162 http://ftpmaster.internal/ubuntu/ precise/main tcl8.5-dev i386 8.5.11-1ubuntu1 [970 kB]
Get:163 http://ftpmaster.internal/ubuntu/ precise/main texi2html i386 1.82-1ubuntu1 [401 kB]
Get:164 http://ftpmaster.internal/ubuntu/ precise/main texinfo i386 4.13a.dfsg.1-8ubuntu1 [447 kB]
Get:165 http://ftpmaster.internal/ubuntu/ precise/main texlive-common all 2009-15 [94.4 kB]
Get:166 http://ftpmaster.internal/ubuntu/ precise/main texlive-doc-base all 2009-2 [1339 kB]
Get:167 http://ftpmaster.internal/ubuntu/ precise/main texlive-binaries i386 2009-11ubuntu2 [7664 kB]
Get:168 http://ftpmaster.internal/ubuntu/ precise/main texlive-base all 2009-15 [14.7 MB]
Get:169 http://ftpmaster.internal/ubuntu/ precise/main texlive-extra-utils all 2009-10ubuntu1 [1576 kB]
Get:170 http://ftpmaster.internal/ubuntu/ precise/main texlive-fonts-extra all 2009-10ubuntu1 [83.5 MB]
Get:171 http://ftpmaster.internal/ubuntu/ precise/main texlive-fonts-recommended all 2009-15 [7247 kB]
Get:172 http://ftpmaster.internal/ubuntu/ precise/main texlive-generic-recommended all 2009-15 [1705 kB]
Get:173 http://ftpmaster.internal/ubuntu/ precise/main texlive-latex-base all 2009-15 [1406 kB]
Get:174 http://ftpmaster.internal/ubuntu/ precise/main texlive-pictures all 2009-15 [856 kB]
Get:175 http://ftpmaster.internal/ubuntu/ precise/main texlive-latex-extra all 2009-10ubuntu1 [4717 kB]
Get:176 http://ftpmaster.internal/ubuntu/ precise/main texlive-latex-recommended all 2009-15 [6752 kB]
Get:177 http://ftpmaster.internal/ubuntu/ precise/main tk8.5 i386 8.5.11-1 [996 kB]
Get:178 http://ftpmaster.internal/ubuntu/ precise/main tk8.5-dev i386 8.5.11-1 [919 kB]
Get:179 http://ftpmaster.internal/ubuntu/ precise/main x11-xkb-utils i386 7.6+4 [189 kB]
Get:180 http://ftpmaster.internal/ubuntu/ precise/main xdg-utils all 1.1.0~rc1-2ubuntu6 [66.6 kB]
Get:181 http://ftpmaster.internal/ubuntu/ precise/main xfonts-encodings all 1:1.0.4-1 [583 kB]
Get:182 http://ftpmaster.internal/ubuntu/ precise/main xfonts-utils i386 1:7.6+1 [94.5 kB]
Get:183 http://ftpmaster.internal/ubuntu/ precise/main xfonts-base all 1:1.0.3 [6180 kB]
Get:184 http://ftpmaster.internal/ubuntu/ precise/main xserver-common all 2:1.10.4-1ubuntu6 [32.7 kB]
Get:185 http://ftpmaster.internal/ubuntu/ precise/main xvfb i386 2:1.10.4-1ubuntu6 [880 kB]
Get:186 http://ftpmaster.internal/ubuntu/ precise/main liblzma-dev i386 5.1.1alpha+20110809-3 [99.3 kB]
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Creating config file /etc/texmf/texmf.d/80DVIPDFMx.cnf with new version

Creating config file /etc/texmf/texmf.d/85Misc.cnf with new version

Creating config file /etc/texmf/texmf.d/90TeXDoc.cnf with new version

Creating config file /etc/texmf/texmf.d/95NonPath.cnf with new version

Creating config file /etc/texmf/updmap.d/00updmap.cfg with new version

Creating config file /etc/texmf/texmf.cnf with new version
Running mktexlsr. This may take some time... done.
texlive-base is not ready, delaying updmap-sys call
texlive-base is not ready, skipping fmtutil-sys --all call
Setting up preview-latex-style (11.86-2ubuntu1) ...
Setting up tcl8.5 (8.5.11-1ubuntu1) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
Setting up tcl8.5-dev (8.5.11-1ubuntu1) ...
Setting up texi2html (1.82-1ubuntu1) ...
Setting up texinfo (4.13a.dfsg.1-8ubuntu1) ...
Running mktexlsr. This may take some time. ... done.
Setting up texlive-common (2009-15) ...
Setting up texlive-doc-base (2009-2) ...
Setting up texlive-binaries (2009-11ubuntu2) ...
update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode.
update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode.
Building format(s) --refresh.
	This may take some time... done.
Setting up tk8.5 (8.5.11-1) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
Setting up tk8.5-dev (8.5.11-1) ...
Setting up x11-xkb-utils (7.6+4) ...
Setting up xdg-utils (1.1.0~rc1-2ubuntu6) ...
Setting up xfonts-encodings (1:1.0.4-1) ...
Setting up xfonts-utils (1:7.6+1) ...
Setting up xfonts-base (1:1.0.3) ...
Setting up xserver-common (2:1.10.4-1ubuntu6) ...
Setting up xvfb (2:1.10.4-1ubuntu6) ...
Setting up liblzma-dev (5.1.1alpha+20110809-3) ...
Processing triggers for tex-common ...
Running mktexlsr. This may take some time... done.
Setting up texlive-base (2009-15) ...

Creating config file /etc/texmf/dvips/config/config.ps with new version

Creating config file /etc/texmf/tex/generic/config/pdftexconfig.tex with new version

Creating config file /etc/texmf/dvipdfmx/dvipdfmx.cfg with new version

Creating config file /etc/texmf/xdvi/XDvi with new version
Running mktexlsr. This may take some time... done.
Building format(s) --all --cnffile /etc/texmf/fmt.d/10texlive-base.cnf.
	This may take some time... done.
Processing triggers for tex-common ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building e-tex based formats --byhyphen /var/lib/texmf/tex/generic/config/language.def.
	This may take some time... done.
Setting up texlive-fonts-recommended (2009-15) ...
Setting up texlive-generic-recommended (2009-15) ...
Setting up texlive-latex-base (2009-15) ...
Running mktexlsr. This may take some time... done.
Building format(s) --all --cnffile /etc/texmf/fmt.d/10texlive-latex-base.cnf.
	This may take some time... done.
Setting up texlive-pictures (2009-15) ...
Setting up texlive-extra-utils (2009-10ubuntu1) ...
Setting up texlive-fonts-extra (2009-10ubuntu1) ...
Processing triggers for tex-common ...
Running mktexlsr. This may take some time... done.
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Setting up texlive-latex-extra (2009-10ubuntu1) ...
Setting up texlive-latex-recommended (2009-15) ...
Processing triggers for tex-common ...
Running mktexlsr. This may take some time... done.
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Setting up openjdk-6-jre-headless (6b24~pre2-0ubuntu2) ...
update-alternatives: using /usr/lib/jvm/java-6-openjdk-i386/jre/bin/java to provide /usr/bin/java (java) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-i386/jre/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-i386/jre/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-i386/jre/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-i386/jre/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-i386/jre/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-i386/jre/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-i386/jre/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-i386/jre/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-i386/jre/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode.
Setting up openjdk-6-jre-lib (6b24~pre2-0ubuntu2) ...
Setting up openjdk-6-jre (6b24~pre2-0ubuntu2) ...
update-alternatives: using /usr/lib/jvm/java-6-openjdk-i386/jre/bin/policytool to provide /usr/bin/policytool (policytool) in auto mode.
Setting up openjdk-6-jdk (6b24~pre2-0ubuntu2) ...
update-alternatives: using /usr/lib/jvm/java-6-openjdk-i386/bin/appletviewer to provide /usr/bin/appletviewer (appletviewer) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-i386/bin/apt to provide /usr/bin/apt (apt) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-i386/bin/extcheck to provide /usr/bin/extcheck (extcheck) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-i386/bin/idlj to provide /usr/bin/idlj (idlj) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-i386/bin/jar to provide /usr/bin/jar (jar) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-i386/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-i386/bin/javac to provide /usr/bin/javac (javac) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-i386/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-i386/bin/javah to provide /usr/bin/javah (javah) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-i386/bin/javap to provide /usr/bin/javap (javap) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-i386/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-i386/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-i386/bin/jhat to provide /usr/bin/jhat (jhat) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-i386/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-i386/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-i386/bin/jps to provide /usr/bin/jps (jps) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-i386/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-i386/bin/jsadebugd to provide /usr/bin/jsadebugd (jsadebugd) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-i386/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-i386/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-i386/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-i386/bin/native2ascii to provide /usr/bin/native2ascii (native2ascii) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-i386/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-i386/bin/schemagen to provide /usr/bin/schemagen (schemagen) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-i386/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-i386/bin/wsgen to provide /usr/bin/wsgen (wsgen) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-i386/bin/wsimport to provide /usr/bin/wsimport (wsimport) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-i386/bin/xjc to provide /usr/bin/xjc (xjc) in auto mode.
Setting up ca-certificates-java (20110912ubuntu4) ...
Adding debian:QuoVadis_Root_CA_2.pem
Adding debian:NetLock_Notary_=Class_A=_Root.pem
Adding debian:TURKTRUST_Certificate_Services_Provider_Root_1.pem
Adding debian:ComSign_CA.pem
Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem
Adding debian:GeoTrust_Global_CA_2.pem
Adding debian:SwissSign_Platinum_CA_-_G2.pem
Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem
Adding debian:Certplus_Class_2_Primary_CA.pem
Adding debian:NetLock_Business_=Class_B=_Root.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Staat_der_Nederlanden_Root_CA.pem
Adding debian:UTN_USERFirst_Hardware_Root_CA.pem
Adding debian:CA_Disig.pem
Adding debian:UTN_USERFirst_Email_Root_CA.pem
Adding debian:Starfield_Class_2_CA.pem
Adding debian:America_Online_Root_Certification_Authority_1.pem
Adding debian:AddTrust_Qualified_Certificates_Root.pem
Adding debian:thawte_Primary_Root_CA_-_G3.pem
Adding debian:GeoTrust_Global_CA.pem
Adding debian:Juur-SK.pem
Adding debian:TC_TrustCenter_Class_3_CA_II.pem
Adding debian:DST_ACES_CA_X6.pem
Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem
Adding debian:Buypass_Class_2_CA_1.pem
Adding debian:Taiwan_GRCA.pem
Adding debian:Certum_Root_CA.pem
Adding debian:signet_pca3_pem.pem
Adding debian:signet_ocspklasa3_pem.pem
Adding debian:cacert.org.pem
Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:ComSign_Secured_CA.pem
Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
Adding debian:Secure_Global_CA.pem
Adding debian:Equifax_Secure_eBusiness_CA_1.pem
Warning: there was a problem reading the certificate file /etc/ssl/certs/EBG_Elektronik_Sertifika_Hizmet_Sa??lay??c??s??.pem. Message:
  /etc/ssl/certs/EBG_Elektronik_Sertifika_Hizmet_Sa??lay??c??s??.pem (No such file or directory)
Adding debian:GlobalSign_Root_CA_-_R2.pem
Adding debian:Certigna.pem
Adding debian:WellsSecure_Public_Root_Certificate_Authority.pem
Adding debian:Hongkong_Post_Root_CA_1.pem
Adding debian:Camerfirma_Chambers_of_Commerce_Root.pem
Adding debian:signet_rootca_pem.pem
Adding debian:Digital_Signature_Trust_Co._Global_CA_3.pem
Adding debian:Entrust.net_Secure_Server_CA.pem
Adding debian:DigiCert_Assured_ID_Root_CA.pem
Adding debian:Equifax_Secure_eBusiness_CA_2.pem
Adding debian:cert_igca_dsa.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:Chambers_of_Commerce_Root_-_2008.pem
Adding debian:Thawte_Personal_Freemail_CA.pem
Adding debian:Comodo_Trusted_Services_root.pem
Adding debian:ApplicationCA_-_Japanese_Government.pem
Adding debian:AddTrust_External_Root.pem
Adding debian:Go_Daddy_Class_2_CA.pem
Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2.pem
Adding debian:TDC_Internet_Root_CA.pem
Adding debian:Thawte_Premium_Server_CA.pem
Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Equifax_Secure_CA.pem
Adding debian:Comodo_Secure_Services_root.pem
Adding debian:RSA_Security_2048_v3.pem
Adding debian:RSA_Root_Certificate_1.pem
Adding debian:AOL_Time_Warner_Root_Certification_Authority_2.pem
Warning: there was a problem reading the certificate file /etc/ssl/certs/AC_Ra??z_Certic??mara_S.A..pem. Message:
  /etc/ssl/certs/AC_Ra??z_Certic??mara_S.A..pem (No such file or directory)
Adding debian:thawte_Primary_Root_CA_-_G2.pem
Adding debian:GeoTrust_Universal_CA_2.pem
Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
Adding debian:Comodo_AAA_Services_root.pem
Adding debian:E-Guven_Kok_Elektronik_Sertifika_Hizmet_Saglayicisi.pem
Adding debian:NetLock_Qualified_=Class_QA=_Root.pem
Adding debian:IGC_A.pem
Adding debian:SwissSign_Gold_CA_-_G2.pem
Adding debian:Global_Chambersign_Root_-_2008.pem
Adding debian:AddTrust_Public_Services_Root.pem
Adding debian:CNNIC_ROOT.pem
Warning: there was a problem reading the certificate file /etc/ssl/certs/NetLock_Arany_=Class_Gold=_F??tan??s??tv??ny.pem. Message:
  /etc/ssl/certs/NetLock_Arany_=Class_Gold=_F??tan??s??tv??ny.pem (No such file or directory)
Adding debian:GTE_CyberTrust_Global_Root.pem
Adding debian:Camerfirma_Global_Chambersign_Root.pem
Adding debian:TC_TrustCenter__Germany__Class_2_CA.pem
Adding debian:spi-ca-2003.pem
Adding debian:StartCom_Certification_Authority.pem
Adding debian:Digital_Signature_Trust_Co._Global_CA_1.pem
Adding debian:signet_ca2_pem.pem
Adding debian:spi-cacert-2008.pem
Adding debian:Baltimore_CyberTrust_Root.pem
Adding debian:QuoVadis_Root_CA.pem
Adding debian:Visa_eCommerce_Root.pem
Adding debian:COMODO_ECC_Certification_Authority.pem
Adding debian:ACEDICOM_Root.pem
Adding debian:signet_ca3_pem.pem
Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority.pem
Adding debian:UTN_DATACorp_SGC_Root_CA.pem
Adding debian:DST_Root_CA_X3.pem
Adding debian:Thawte_Time_Stamping_CA.pem
Adding debian:Firmaprofesional_Root_CA.pem
Adding debian:Izenpe.com.pem
Adding debian:signet_pca2_pem.pem
Adding debian:ePKI_Root_Certification_Authority.pem
Adding debian:certSIGN_ROOT_CA.pem
Adding debian:NetLock_Express_=Class_C=_Root.pem
Adding debian:XRamp_Global_CA_Root.pem
Adding debian:Wells_Fargo_Root_CA.pem
Adding debian:COMODO_Certification_Authority.pem
Adding debian:ValiCert_Class_2_VA.pem
Adding debian:GeoTrust_Primary_Certification_Authority.pem
Adding debian:QuoVadis_Root_CA_3.pem
Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority.pem
Adding debian:brasil.gov.br.pem
Adding debian:Buypass_Class_3_CA_1.pem
Adding debian:DigiCert_Global_Root_CA.pem
Adding debian:SecureTrust_CA.pem
Adding debian:ValiCert_Class_1_VA.pem
Adding debian:Network_Solutions_Certificate_Authority.pem
Adding debian:signet_ca1_pem.pem
Adding debian:America_Online_Root_Certification_Authority_2.pem
Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem
Adding debian:Sonera_Class_1_Root_CA.pem
Adding debian:GlobalSign_Root_CA_-_R3.pem
Adding debian:signet_tsa1_pem.pem
Adding debian:Verisign_Class_4_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:TC_TrustCenter_Universal_CA_III.pem
Adding debian:SwissSign_Silver_CA_-_G2.pem
Adding debian:Thawte_Server_CA.pem
Adding debian:Entrust_Root_Certification_Authority.pem
Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem
Warning: there was a problem reading the certificate file /etc/ssl/certs/T??B??TAK_UEKAE_K??k_Sertifika_Hizmet_Sa??lay??c??s??_-_S??r??m_3.pem. Message:
  /etc/ssl/certs/T??B??TAK_UEKAE_K??k_Sertifika_Hizmet_Sa??lay??c??s??_-_S??r??m_3.pem (No such file or directory)
Adding debian:Security_Communication_EV_RootCA1.pem
Adding debian:TC_TrustCenter__Germany__Class_3_CA.pem
Adding debian:TDC_OCES_Root_CA.pem
Adding debian:thawte_Primary_Root_CA.pem
Adding debian:Microsec_e-Szigno_Root_CA.pem
Adding debian:S-TRUST_Authentication_and_Encryption_Root_CA_2005_PN.pem
Adding debian:AddTrust_Low-Value_Services_Root.pem
Adding debian:Verisign_Class_4_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Sonera_Class_2_Root_CA.pem
Adding debian:VeriSign_Universal_Root_Certification_Authority.pem
Adding debian:ca.pem
Adding debian:Equifax_Secure_Global_eBusiness_CA.pem
Adding debian:cert_igca_rsa.pem
Adding debian:SecureSign_RootCA11.pem
Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:AOL_Time_Warner_Root_Certification_Authority_1.pem
Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem
Adding debian:Swisscom_Root_CA_1.pem
Adding debian:Deutsche_Telekom_Root_CA_2.pem
Adding debian:TC_TrustCenter_Universal_CA_I.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority.pem
Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
Adding debian:Security_Communication_Root_CA.pem
Adding debian:GlobalSign_Root_CA.pem
Adding debian:TC_TrustCenter_Class_2_CA_II.pem
Adding debian:GeoTrust_Universal_CA.pem
Adding debian:Cybertrust_Global_Root.pem
Adding debian:signet_ocspklasa2_pem.pem
done.
Processing triggers for libc-bin ...
ldconfig deferred processing now taking place
Checking correctness of source dependencies...
Toolchain package versions: libc6-dev_2.13-23ubuntu1 make_3.81-8.1ubuntu1 dpkg-dev_1.16.1.2ubuntu5 gcc-4.6_4.6.2-9ubuntu1 g++-4.6_4.6.2-9ubuntu1 binutils_2.22-2ubuntu1 libstdc++6-4.6-dev_4.6.2-9ubuntu1 libstdc++6_4.6.2-9ubuntu1
------------------------------------------------------------------------------
gpgv: Signature made Thu Dec 22 12:43:44 2011 UTC using DSA key ID 91B0D3B7
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./r-base_2.14.1-1.dsc
dpkg-source: info: extracting r-base in r-base-2.14.1
dpkg-source: info: unpacking r-base_2.14.1.orig.tar.gz
dpkg-source: info: applying r-base_2.14.1-1.diff.gz
dpkg-source: info: upstream files that have been modified: 
 r-base-2.14.1/configure
 r-base-2.14.1/m4/R.m4
dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security
dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): -D_FORTIFY_SOURCE=2
dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): -Wl,-Bsymbolic-functions -Wl,-z,relro
dpkg-buildpackage: source package r-base
dpkg-buildpackage: source version 2.14.1-1
 dpkg-source --before-build r-base-2.14.1
dpkg-buildpackage: host architecture i386
 /usr/bin/fakeroot debian/rules clean
*** clean ***
dh_testdir
dh_testroot
rm -f	configure-stamp \
		build-stamp build-indep-stamp build-arch-stamp \
		make-stamp make-arch-stamp make-indep-stamp \
		install-indep-stamp install-arch-stamp \
		check-stamp 
[ ! -f Makefile ] || /usr/bin/make distclean
rm -f `find . -name "*~"`
rm -rf debian/tmp debian/files* core debian/substvars
rm -f doc/html/function.html doc/html/packages.html
rm -f modules/*.so src/unix/Rscript
dh_clean
 debian/rules build
*** configure ***
#automake
#autoconf
dh_testdir
R_PAPERSIZE=letter				\
	R_BROWSER=xdg-open				\
	PAGER=/usr/bin/pager				\
	PERL=/usr/bin/perl				\
	R_UNZIPCMD=/usr/bin/unzip			\
	R_ZIPCMD=/usr/bin/zip				\
	R_PRINTCMD=/usr/bin/lpr				\
	LIBnn=lib					\
	AWK=/usr/bin/awk                                \
	CC="gcc -std=gnu99"					\
	CXX=g++						\
	F77=gfortran					\
	FC=gfortran					\
	CFLAGS="-O3 -pipe  -g"				\
	CXXFLAGS="-O3 -pipe  -g"				\
	FFLAGS="-O3 -pipe  -g"				\
	FCFLAGS="-O3 -pipe  -g"				\
	CPPFLAGS=					\
	LDFLAGS=					\
	FLIBS=						\
	rsharedir=/usr/share/R/share			\
	rincludedir=/usr/share/R/include		\
	rdocdir=/usr/share/R/doc			\
	./configure --prefix=/usr			\
		    --with-cairo			\
		    --with-jpeglib			\
		    --with-readline			\
		    --with-tcltk			\
		    --with-system-bzlib			\
		    --with-system-pcre			\
		    --with-system-zlib			\
		    --mandir=/usr/share/man		\
		    --infodir=/usr/share/info		\
		    --datadir=/usr/share/R/share	\
		    --includedir=/usr/share/R/include	\
		    --with-blas		\
		    --with-lapack		\
		    --enable-R-profiling		\
		    --enable-R-shlib			\
		    --enable-memory-profiling		\
		    --without-recommended-packages	\
		    --build i686-linux-gnu
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
loading site script './config.site'
loading build-specific script './config.site'
checking for pwd... /bin/pwd
checking whether builddir is srcdir... yes
checking for working aclocal... missing
checking for working autoconf... missing
checking for working automake... missing
checking for working autoheader... missing
checking for gawk... /usr/bin/awk
checking whether ln -s works... yes
checking for bison... bison -y
checking for ar... ar
checking for a BSD-compatible install... /usr/bin/install -c
checking for sed... /bin/sed
checking for which... /usr/bin/which
checking for /usr/bin/pager... /usr/bin/pager
checking for gtar... no
checking for gnutar... no
checking for tar... /bin/tar
checking for tex... /usr/bin/tex
checking for pdftex... /usr/bin/pdftex
checking for pdflatex... /usr/bin/pdflatex
checking for makeindex... /usr/bin/makeindex
checking for makeinfo... /usr/bin/makeinfo
checking whether makeinfo version is at least 4.7... yes
checking for install-info... /usr/sbin/install-info
checking for texi2dvi... /usr/bin/texi2dvi
checking for kpsewhich... /usr/bin/kpsewhich
checking for unzip... /usr/bin/unzip
checking for zip... /usr/bin/zip
checking for gzip... /bin/gzip
checking for bzip2... /bin/bzip2
using default browser ... xdg-open
checking for acroread... no
checking for acroread4... no
checking for xdg-open... /usr/bin/xdg-open
checking for notangle... false
checking for pkg-config... /usr/bin/pkg-config
checking for gcc... gcc -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -std=gnu99 -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking whether gcc -std=gnu99 needs -traditional... no
checking how to run the C preprocessor... gcc -std=gnu99 -E
defining F77 to be gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking how to run the C++ preprocessor... g++ -E
checking whether __attribute__((visibility())) is supported... yes
checking whether gcc -std=gnu99 accepts -fvisibility... yes
checking whether gfortran accepts -fvisibility... yes
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking minix/config.h usability... no
checking minix/config.h presence... no
checking for minix/config.h... no
checking whether it is safe to define __EXTENSIONS__... yes
checking for gcc... gcc
checking whether we are using the GNU Objective C compiler... no
checking whether gcc accepts -g... no
checking for Objective C++ compiler... trying some possibilities
checking whether g++ can compile ObjC++... no
checking whether  can compile ObjC++... no
no working compiler found
checking for a sed that does not truncate output... (cached) /bin/sed
checking for fgrep... /bin/grep -F
checking for ld used by gcc -std=gnu99... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 805306365
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc -std=gnu99 object... ok
checking for dlfcn.h... yes
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether g++ accepts -g... (cached) yes
checking how to run the C++ preprocessor... g++ -E
checking whether we are using the GNU Fortran 77 compiler... (cached) yes
checking whether gfortran accepts -g... (cached) yes
checking for objdir... .libs
checking if gcc -std=gnu99 supports -fno-rtti -fno-exceptions... no
checking for gcc -std=gnu99 option to produce PIC... -fPIC -DPIC
checking if gcc -std=gnu99 PIC flag -fPIC -DPIC works... yes
checking if gcc -std=gnu99 static flag -static works... yes
checking if gcc -std=gnu99 supports -c -o file.o... yes
checking if gcc -std=gnu99 supports -c -o file.o... (cached) yes
checking whether the gcc -std=gnu99 linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for cos in -lm... yes
checking for sin in -lm... yes
checking for dlopen in -ldl... yes
checking readline/history.h usability... yes
checking readline/history.h presence... yes
checking for readline/history.h... yes
checking readline/readline.h usability... yes
checking readline/readline.h presence... yes
checking for readline/readline.h... yes
checking for rl_callback_read_char in -lreadline... yes
checking for history_truncate_file... yes
checking whether rl_completion_matches exists and is declared... yes
checking for ANSI C header files... (cached) yes
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for sys/wait.h that is POSIX.1 compatible... yes
checking arpa/inet.h usability... yes
checking arpa/inet.h presence... yes
checking for arpa/inet.h... yes
checking dl.h usability... no
checking dl.h presence... no
checking for dl.h... no
checking for dlfcn.h... (cached) yes
checking elf.h usability... yes
checking elf.h presence... yes
checking for elf.h... yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking floatingpoint.h usability... no
checking floatingpoint.h presence... no
checking for floatingpoint.h... no
checking fpu_control.h usability... yes
checking fpu_control.h presence... yes
checking for fpu_control.h... yes
checking glob.h usability... yes
checking glob.h presence... yes
checking for glob.h... yes
checking grp.h usability... yes
checking grp.h presence... yes
checking for grp.h... yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking netinet/in.h usability... yes
checking netinet/in.h presence... yes
checking for netinet/in.h... yes
checking pwd.h usability... yes
checking pwd.h presence... yes
checking for pwd.h... yes
checking for strings.h... (cached) yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking sys/resource.h usability... yes
checking sys/resource.h presence... yes
checking for sys/resource.h... yes
checking sys/select.h usability... yes
checking sys/select.h presence... yes
checking for sys/select.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking for sys/stat.h... (cached) yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking sys/times.h usability... yes
checking sys/times.h presence... yes
checking for sys/times.h... yes
checking sys/utsname.h usability... yes
checking sys/utsname.h presence... yes
checking for sys/utsname.h... yes
checking for unistd.h... (cached) yes
checking utime.h usability... yes
checking utime.h presence... yes
checking for utime.h... yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking for inttypes.h... (cached) yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking locale.h usability... yes
checking locale.h presence... yes
checking for locale.h... yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking stdbool.h usability... yes
checking stdbool.h presence... yes
checking for stdbool.h... yes
checking for stdint.h... (cached) yes
checking for string.h... (cached) yes
checking whether setjmp.h is POSIX.1 compatible... yes
checking whether sigsetjmp is declared... yes
checking whether siglongjmp is declared... yes
checking for GNU C library with version >= 2... yes
checking return type of signal handlers... void
checking for pid_t... yes
checking for size_t... yes
checking whether SIZE_MAX is declared... yes
checking for blkcnt_t... yes
checking for type of socket length... socklen_t *
checking for stack_t... yes
checking for intptr_t... yes
checking for uintptr_t... yes
checking whether byte ordering is bigendian... no
checking for an ANSI C-conforming const... yes
checking for gcc -std=gnu99 option to accept ISO C99... none needed
checking for gcc -std=gnu99 option to accept ISO Standard C... (cached) none needed
checking for inline... inline
checking size of int... 4
checking size of long... 4
checking size of long long... 8
checking size of double... 8
checking size of long double... 12
checking size of size_t... 4
checking whether we can compute C Make dependencies... yes, using gcc -std=gnu99 -MM
checking whether gcc -std=gnu99 supports -c -o FILE.lo... yes
checking for gcc -std=gnu99 option to support OpenMP... -fopenmp
checking how to get verbose linking output from gfortran... -v
checking for Fortran 77 libraries of gfortran...  -L/usr/lib/gcc/i686-linux-gnu/4.6 -L/usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/4.6/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/4.6/../../.. -lgfortran -lm -lquadmath
checking how to get verbose linking output from gcc -std=gnu99... -v
checking for C libraries of gcc -std=gnu99...  -L/usr/lib/gcc/i686-linux-gnu/4.6 -L/usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/4.6/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/4.6/../../.. -lgcc_s
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore
checking whether gfortran appends underscores to external names... yes
checking whether gfortran appends extra underscores to external names... no
checking whether mixed C/Fortran code can be run... yes
checking whether gfortran and gcc -std=gnu99 agree on int and double... yes
checking whether gfortran and gcc -std=gnu99 agree on double complex... yes
checking for gfortran option to support OpenMP... -fopenmp
checking whether g++ accepts -M for generating dependencies... yes
checking for g++ option to support OpenMP... -fopenmp
checking whether we can compute ObjC Make dependencies... no
checking whether C runtime needs -D__NO_MATH_INLINES... no
checking for xmkmf... no
checking for off_t... yes
checking for working alloca.h... yes
checking for alloca... yes
checking whether alloca is declared... yes
checking whether expm1 exists and is declared... yes
checking whether hypot exists and is declared... yes
checking whether log1p exists and is declared... yes
checking whether log2 exists and is declared... yes
checking whether log10 exists and is declared... yes
checking whether nearbyint exists and is declared... yes
checking whether nearbyintl exists and is declared... yes
checking whether powl exists and is declared... yes
checking whether rint exists and is declared... yes
checking whether rintl exists and is declared... yes
checking whether va_copy exists and is declared... yes
checking for isblank... yes
checking for fseeko... yes
checking for ftello... yes
checking for matherr... yes
checking whether fcntl exists and is declared... yes
checking whether getgrgid exists and is declared... yes
checking whether getpwuid exists and is declared... yes
checking whether kill exists and is declared... yes
checking whether sigaction exists and is declared... yes
checking whether sigaltstack exists and is declared... yes
checking whether sigemptyset exists and is declared... yes
checking whether fdopen exists and is declared... yes
checking whether popen exists and is declared... yes
checking whether setenv exists and is declared... yes
checking whether unsetenv exists and is declared... yes
checking whether getrlimit exists and is declared... yes
checking whether getrusage exists and is declared... yes
checking whether getpriority exists and is declared... yes
checking whether chmod exists and is declared... yes
checking whether mkfifo exists and is declared... yes
checking whether stat exists and is declared... yes
checking whether umask exists and is declared... yes
checking whether gettimeofday exists and is declared... yes
checking whether utimes exists and is declared... yes
checking whether times exists and is declared... yes
checking whether access exists and is declared... yes
checking whether chdir exists and is declared... yes
checking whether execv exists and is declared... yes
checking whether ftruncate exists and is declared... yes
checking whether getcwd exists and is declared... yes
checking whether geteuid exists and is declared... yes
checking whether getuid exists and is declared... yes
checking whether link exists and is declared... yes
checking whether readlink exists and is declared... yes
checking whether symlink exists and is declared... yes
checking whether sysconf exists and is declared... yes
checking whether utime exists and is declared... yes
checking whether clock_gettime exists and is declared... yes
checking for clock_gettime in -lrt... yes
checking for putenv... yes
checking whether putenv is declared... yes
checking for vasprintf... yes
checking whether vasprintf is declared... yes
checking for mempcpy... yes
checking for realpath... yes
checking whether realpath is declared... yes
checking whether glob exists and is declared... yes
checking for isnan... yes
checking whether isfinite is declared... yes
checking whether isnan is declared... yes
checking whether you have IEEE 754 floating-point arithmetic... yes
checking whether putenv("FOO") can unset an environment variable... yes
checking whether putenv("FOO=") can unset an environment variable... no
checking for nl_langinfo and CODESET... yes
checking for mkdtemp... yes
checking for strdup... yes
checking for strncasecmp... yes
checking whether mkdtemp is declared... yes
checking whether strdup is declared... yes
checking whether strncasecmp is declared... yes
checking for library containing connect... none required
checking for library containing gethostbyname... none required
checking for library containing xdr_string... none required
checking for __setfpucw... no
checking for working calloc... yes
checking for working isfinite... yes
checking for working log1p... yes
checking whether ftell works correctly on files opened for append... yes
checking for working sigaction... yes
checking whether mktime sets errno... no
checking whether C99 double complex is supported... 
checking complex.h usability... yes
checking complex.h presence... yes
checking for complex.h... yes
checking for double complex... yes
yes
checking whether cabs exists and is declared... yes
checking whether carg exists and is declared... yes
checking whether cexp exists and is declared... yes
checking whether clog exists and is declared... yes
checking whether csqrt exists and is declared... yes
checking whether cpow exists and is declared... yes
checking whether ccos exists and is declared... yes
checking whether csin exists and is declared... yes
checking whether ctan exists and is declared... yes
checking whether cacos exists and is declared... yes
checking whether casin exists and is declared... yes
checking whether catan exists and is declared... yes
checking whether ccosh exists and is declared... yes
checking whether csinh exists and is declared... yes
checking whether ctanh exists and is declared... yes
checking for cblas_cdotu_sub in vecLib framework... no
checking for dgemm_... no
checking for ATL_xerbla in -latlas... no
checking for dgemm_ in -lblas... yes
checking for dgemm_ in -ldgemm... no
checking for dgemm_ in -lblas... (cached) yes
checking for dgemm_ in -lessl... no
checking for dgemm_ in -lblas... (cached) yes
checking whether double complex BLAS can be used... yes
checking whether the BLAS is complete... yes
checking for zgeev_... no
checking for zgeev_ in -llapack... yes
checking iconv.h usability... yes
checking iconv.h presence... yes
checking for iconv.h... yes
checking for iconv... yes
checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes
checking for iconvlist... no
checking for iconv... yes
checking for iconv declaration... 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking wchar.h usability... yes
checking wchar.h presence... yes
checking for wchar.h... yes
checking wctype.h usability... yes
checking wctype.h presence... yes
checking for wctype.h... yes
checking whether mbrtowc exists and is declared... yes
checking whether wcrtomb exists and is declared... yes
checking whether wcscoll exists and is declared... yes
checking whether wcsftime exists and is declared... yes
checking whether wcstod exists and is declared... yes
checking whether mbstowcs exists and is declared... yes
checking whether wcstombs exists and is declared... yes
checking whether wctrans exists and is declared... yes
checking whether iswblank exists and is declared... yes
checking whether wctype exists and is declared... yes
checking whether iswctype exists and is declared... yes
checking for wctrans_t... yes
checking for mbstate_t... yes
checking for ICU... no
checking for X... libraries , headers 
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
checking X11/Intrinsic.h usability... yes
checking X11/Intrinsic.h presence... yes
checking for X11/Intrinsic.h... yes
checking for XtToolkitInitialize in -lXt... yes
using X11 ... yes
checking for KeySym... yes
checking X11/Xmu/Atoms.h usability... no
checking X11/Xmu/Atoms.h presence... no
checking for X11/Xmu/Atoms.h... no
checking whether pkg-config knows about cairo and pango... yes
checking whether cairo including pango is >= 1.2 and works... yes
checking for tclConfig.sh... no
checking for tclConfig.sh in library (sub)directories... /usr/lib/tcl8.5/tclConfig.sh
checking for tkConfig.sh... no
checking for tkConfig.sh in library (sub)directories... /usr/lib/tk8.5/tkConfig.sh
checking tcl.h usability... yes
checking tcl.h presence... yes
checking for tcl.h... yes
checking tk.h usability... yes
checking tk.h presence... yes
checking for tk.h... yes
checking whether compiling/linking Tcl/Tk code works... yes
checking for BSD networking... yes
checking if jpeglib version >= 6b... yes
checking for jpeg_destroy_compress in -ljpeg... yes
checking for main in -lz... yes
checking if libpng version >= 1.2.7... yes
checking for png_create_write_struct in -lpng... yes
checking tiffio.h usability... yes
checking tiffio.h presence... yes
checking for tiffio.h... yes
checking for TIFFOpen in -ltiff... yes
checking for XDR support... checking rpc/types.h usability... yes
checking rpc/types.h presence... yes
checking for rpc/types.h... yes
checking for rpc/xdr.h... yes
yes
checking for inflateInit2_ in -lz... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking if zlib version >= 1.2.3... yes
checking whether zlib support needs to be compiled... no
checking for BZ2_bzlibVersion in -lbz2... yes
checking bzlib.h usability... yes
checking bzlib.h presence... yes
checking for bzlib.h... yes
checking if bzip2 version >= 1.0.6... yes
checking whether bzip2 support needs to be compiled... no
checking for lzma_version_number in -llzma... yes
checking lzma.h usability... yes
checking lzma.h presence... yes
checking for lzma.h... yes
checking if lzma version >= 4.999... yes
checking for pcre_fullinfo in -lpcre... yes
checking pcre.h usability... yes
checking pcre.h presence... yes
checking for pcre.h... yes
checking pcre/pcre.h usability... no
checking pcre/pcre.h presence... no
checking for pcre/pcre.h... no
checking if PCRE version >= 7.6... yes
checking whether PCRE support needs to be compiled... no
checking whether leap seconds are treated according to POSIX... yes
checking for inline... inline
checking for sys/time.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... (cached) yes
checking for struct stat.st_atim.tv_nsec... yes
checking whether struct stat.st_atim is of type struct timespec... yes
checking for setitimer... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... 64
checking for _LARGEFILE_SOURCE value needed for large files... no
checking whether KERN_USRSTACK sysctl is supported... no
checking for visible __lib_stack_end... yes
checking for paperconf... /usr/bin/paperconf
checking for java... /usr/bin/java
checking for javac... /usr/bin/javac
checking for javah... /usr/bin/javah
checking for jar... /usr/bin/jar
checking whether Java compiler works... yes
checking whether Java compiler works for version 1.4... yes
checking whether Java interpreter works... yes
checking Java environment... /usr/lib/jvm/java-6-openjdk-i386/jre
checking for cached Java settings... no
checking whether JNI programs can be compiled... yes
checking whether we are using the GNU Fortran compiler... yes
checking whether gfortran accepts -g... yes
checking whether we are using the GNU Fortran compiler... (cached) yes
checking whether gfortran accepts -g... (cached) yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for Fortran flag to compile .f90 files... none
checking for Fortran flag to compile .f95 files... none
checking for gfortran option to support OpenMP... -fopenmp
checking whether NLS is requested... yes

Configuring src/extra/intl directory
checking whether make sets $(MAKE)... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for msgfmt... /usr/bin/msgfmt
checking for gmsgfmt... /usr/bin/msgfmt
checking for xgettext... /usr/bin/xgettext
checking for msgmerge... /usr/bin/msgmerge
checking whether we are using the GNU C Library 2 or newer... yes
checking for ranlib... (cached) ranlib
checking for simple visibility declarations... yes
checking for stdint.h... yes
checking for getpagesize... yes
checking for working mmap... yes
checking whether integer division by zero raises SIGFPE... yes
checking for inttypes.h... yes
checking for unsigned long long int... yes
checking for inttypes.h... (cached) yes
checking whether the inttypes.h PRIxNN macros are broken... no
checking whether imported symbols can be declared weak... yes
checking for multithread API to use... none
checking argz.h usability... yes
checking argz.h presence... yes
checking for argz.h... yes
checking for inttypes.h... (cached) yes
checking for limits.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... (cached) yes
checking for getcwd... yes
checking for getegid... yes
checking for geteuid... yes
checking for getgid... yes
checking for getuid... yes
checking for mempcpy... (cached) yes
checking for munmap... yes
checking for stpcpy... yes
checking for strcasecmp... yes
checking for strdup... (cached) yes
checking for strtoul... yes
checking for tsearch... yes
checking for argz_count... yes
checking for argz_stringify... yes
checking for argz_next... yes
checking for __fsetlocking... yes
checking whether feof_unlocked is declared... yes
checking whether fgets_unlocked is declared... yes
checking for iconv... (cached) yes
checking for iconv declaration... (cached) 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking for NL_LOCALE_NAME macro... yes
checking for bison... bison
checking version of bison... 2.5, ok
checking for long long int... yes
checking for long double... yes
checking for wchar_t... yes
checking for wint_t... yes
checking for intmax_t... yes
checking whether printf() supports POSIX/XSI format strings... yes
checking whether we are using the GNU C Library 2.1 or newer... yes
checking for stdint.h... (cached) yes
checking for SIZE_MAX... yes
checking for stdint.h... (cached) yes
checking for CFPreferencesCopyAppValue... no
checking for CFLocaleCopyCurrent... no
checking for ptrdiff_t... yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for asprintf... yes
checking for fwprintf... yes
checking for putenv... (cached) yes
checking for setenv... yes
checking for setlocale... yes
checking for snprintf... yes
checking for wcslen... yes
checking whether _snprintf is declared... no
checking whether _snwprintf is declared... no
checking whether getc_unlocked is declared... yes
checking for nl_langinfo and CODESET... (cached) yes
checking for LC_MESSAGES... yes
checking for shared library run path origin... done
checking for CFPreferencesCopyAppValue... (cached) no
checking for CFLocaleCopyCurrent... (cached) no
checking whether included gettext is requested... no
checking for GNU gettext in libc... yes
checking whether to use NLS... yes
checking where the gettext function comes from... libc
Finished configuring src/extra/intl directory

using as R_SHELL for scripts ... /bin/bash
configure: creating ./config.status
config.status: creating Makeconf
config.status: creating Makefile
config.status: creating doc/Makefile
config.status: creating doc/html/Makefile
config.status: creating doc/manual/Makefile
config.status: creating etc/Makefile
config.status: creating etc/Makeconf
config.status: creating etc/Renviron
config.status: creating etc/ldpaths
config.status: creating m4/Makefile
config.status: creating po/Makefile.in
config.status: creating share/Makefile
config.status: creating src/Makefile
config.status: creating src/appl/Makefile
config.status: creating src/extra/Makefile
config.status: creating src/extra/blas/Makefile
config.status: creating src/extra/bzip2/Makefile
config.status: creating src/extra/intl/Makefile
config.status: creating src/extra/pcre/Makefile
config.status: creating src/extra/tre/Makefile
config.status: creating src/extra/xdr/Makefile
config.status: creating src/extra/xz/Makefile
config.status: creating src/extra/zlib/Makefile
config.status: creating src/include/Makefile
config.status: creating src/include/Rmath.h0
config.status: creating src/include/R_ext/Makefile
config.status: creating src/library/Recommended/Makefile
config.status: creating src/library/Makefile
config.status: creating src/library/base/DESCRIPTION
config.status: creating src/library/base/Makefile
config.status: creating src/library/compiler/DESCRIPTION
config.status: creating src/library/compiler/Makefile
config.status: creating src/library/datasets/DESCRIPTION
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config.status: creating src/library/grDevices/DESCRIPTION
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config.status: creating src/library/grDevices/src/cairo/Makefile
config.status: creating src/library/grid/DESCRIPTION
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config.status: creating src/library/parallel/DESCRIPTION
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config.status: creating src/library/parallel/src/Makefile
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config.status: creating src/library/stats/DESCRIPTION
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config.status: creating src/scripts/R.sh
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config.status: creating src/include/config.h
config.status: executing libtool commands
config.status: executing po-directories commands
config.status: creating po/POTFILES
config.status: creating po/Makefile
config.status: executing stamp-h commands

R is now configured for i686-pc-linux-gnu

  Source directory:          .
  Installation directory:    /usr

  C compiler:                gcc -std=gnu99  -O3 -pipe  -g
  Fortran 77 compiler:       gfortran  -O3 -pipe  -g

  C++ compiler:              g++  -O3 -pipe  -g
  Fortran 90/95 compiler:    gfortran -O3 -pipe  -g
  Obj-C compiler:	      

  Interfaces supported:      X11, tcltk
  External libraries:        readline, BLAS(generic), LAPACK(generic), lzma
  Additional capabilities:   PNG, JPEG, TIFF, NLS, cairo
  Options enabled:           shared R library, R profiling, memory profiling, Java

  Recommended packages:      no

touch configure-stamp
*** make-arch ***
/usr/bin/make		CFLAGS="-O3 -pipe  -g"			\
			CXXFLAGS="-O3 -pipe  -g"			\
			FFLAGS="-O3 -pipe  -g"			\
			FCFLAGS="-O3 -pipe  -g"			\
			CC="gcc -std=gnu99"				\
			CXX=g++			\
			F77=gfortran			\
			LDFLAGS="-Wl,-O1"			\
			R
make[1]: Entering directory `/build/buildd/r-base-2.14.1'
make[2]: Entering directory `/build/buildd/r-base-2.14.1/m4'
make[2]: Nothing to be done for `R'.
make[2]: Leaving directory `/build/buildd/r-base-2.14.1/m4'
make[2]: Entering directory `/build/buildd/r-base-2.14.1/tools'
make[2]: Nothing to be done for `R'.
make[2]: Leaving directory `/build/buildd/r-base-2.14.1/tools'
make[2]: Entering directory `/build/buildd/r-base-2.14.1/doc'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/doc/html'
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/doc/html'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/doc/manual'
make[3]: Nothing to be done for `R'.
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/doc/manual'
make[2]: Leaving directory `/build/buildd/r-base-2.14.1/doc'
make[2]: Entering directory `/build/buildd/r-base-2.14.1/etc'
make[2]: Leaving directory `/build/buildd/r-base-2.14.1/etc'
make[2]: Entering directory `/build/buildd/r-base-2.14.1/share'
make[2]: Leaving directory `/build/buildd/r-base-2.14.1/share'
make[2]: Entering directory `/build/buildd/r-base-2.14.1/src'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/src/scripts'
creating src/scripts/R.fe
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/scripts'
mkdir -p -- ../../bin
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/scripts'
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/src/scripts'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/src/include'
mkdir -p -- ../../include
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/include/R_ext'
mkdir -p -- ../../../include/R_ext
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/include/R_ext'
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/src/include'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/src/extra'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/extra/tre'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/extra/tre'
making regcomp.d from regcomp.c
making regerror.d from regerror.c
making regexec.d from regexec.c
making tre-ast.d from tre-ast.c
making tre-compile.d from tre-compile.c
making tre-match-approx.d from tre-match-approx.c
making tre-match-backtrack.d from tre-match-backtrack.c
making tre-match-parallel.d from tre-match-parallel.c
making tre-mem.d from tre-mem.c
making tre-parse.d from tre-parse.c
making tre-stack.d from tre-stack.c
making xmalloc.d from xmalloc.c
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/extra/tre'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/extra/tre'
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -fvisibility=hidden -c regcomp.c -o regcomp.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -fvisibility=hidden -c regerror.c -o regerror.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -fvisibility=hidden -c regexec.c -o regexec.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -fvisibility=hidden -c tre-ast.c -o tre-ast.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -fvisibility=hidden -c tre-compile.c -o tre-compile.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -fvisibility=hidden -c tre-match-approx.c -o tre-match-approx.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -fvisibility=hidden -c tre-match-backtrack.c -o tre-match-backtrack.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -fvisibility=hidden -c tre-match-parallel.c -o tre-match-parallel.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -fvisibility=hidden -c tre-mem.c -o tre-mem.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -fvisibility=hidden -c tre-parse.c -o tre-parse.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -fvisibility=hidden -c tre-stack.c -o tre-stack.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -fvisibility=hidden -c xmalloc.c -o xmalloc.o
rm -f libtre.a
ar cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o xmalloc.o
ranlib libtre.a
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/extra/tre'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/extra/tre'
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/src/extra'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/src/appl'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/appl'
making bakslv.d from bakslv.c
making binning.d from binning.c
making cpoly.d from cpoly.c
making cumsum.d from cumsum.c
making fft.d from fft.c
making fmin.d from fmin.c
making integrate.d from integrate.c
making interv.d from interv.c
making lbfgsb.d from lbfgsb.c
making machar.d from machar.c
making maxcol.d from maxcol.c
making pretty.d from pretty.c
making rcont.d from rcont.c
making rowsum.d from rowsum.c
making stem.d from stem.c
making strsignif.d from strsignif.c
making tabulate.d from tabulate.c
making uncmin.d from uncmin.c
making zeroin.d from zeroin.c
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/appl'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/appl'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c bakslv.c -o bakslv.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c binning.c -o binning.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c cpoly.c -o cpoly.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c cumsum.c -o cumsum.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c fft.c -o fft.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c fmin.c -o fmin.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c integrate.c -o integrate.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c interv.c -o interv.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c lbfgsb.c -o lbfgsb.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c machar.c -o machar.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c maxcol.c -o maxcol.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c pretty.c -o pretty.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rcont.c -o rcont.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rowsum.c -o rowsum.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c stem.c -o stem.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c strsignif.c -o strsignif.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c tabulate.c -o tabulate.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c uncmin.c -o uncmin.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c zeroin.c -o zeroin.o
gfortran  -fopenmp -fpic  -O3 -pipe  -g -c ch2inv.f -o ch2inv.o
gfortran  -fopenmp -fpic  -O3 -pipe  -g -c chol.f -o chol.o
gfortran  -fopenmp -fpic  -O3 -pipe  -g -c dchdc.f -o dchdc.o
gfortran  -fopenmp -fpic  -O3 -pipe  -g -c dpbfa.f -o dpbfa.o
gfortran  -fopenmp -fpic  -O3 -pipe  -g -c dpbsl.f -o dpbsl.o
gfortran  -fopenmp -fpic  -O3 -pipe  -g -c dpoco.f -o dpoco.o
gfortran  -fopenmp -fpic  -O3 -pipe  -g -c dpodi.f -o dpodi.o
gfortran  -fopenmp -fpic  -O3 -pipe  -g -c dpofa.f -o dpofa.o
gfortran  -fopenmp -fpic  -O3 -pipe  -g -c dposl.f -o dposl.o
gfortran  -fopenmp -fpic  -O3 -pipe  -g -c dqrdc.f -o dqrdc.o
gfortran  -fopenmp -fpic  -O3 -pipe  -g -c dqrdc2.f -o dqrdc2.o
gfortran  -fopenmp -fpic  -O3 -pipe  -g -c dqrls.f -o dqrls.o
gfortran  -fopenmp -fpic  -O3 -pipe  -g -c dqrsl.f -o dqrsl.o
gfortran  -fopenmp -fpic  -O3 -pipe  -g -c dqrutl.f -o dqrutl.o
gfortran  -fopenmp -fpic  -O3 -pipe  -g -c dsvdc.f -o dsvdc.o
gfortran  -fopenmp -fpic  -O3 -pipe  -g -c dtrco.f -o dtrco.o
gfortran  -fopenmp -fpic  -O3 -pipe  -g -c dtrsl.f -o dtrsl.o
gfortran  -fopenmp -fpic  -O3 -pipe  -g -c eigen.f -o eigen.o
rm -f libappl.a
ar cr libappl.a bakslv.o binning.o cpoly.o cumsum.o fft.o fmin.o integrate.o interv.o lbfgsb.o machar.o maxcol.o pretty.o rcont.o rowsum.o stem.o strsignif.o tabulate.o uncmin.o zeroin.o ch2inv.o chol.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o eigen.o 
ranlib libappl.a
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/appl'
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/src/appl'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/src/nmath'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/nmath'
making mlutils.d from mlutils.c
making d1mach.d from d1mach.c
making i1mach.d from i1mach.c
making fmax2.d from fmax2.c
making fmin2.d from fmin2.c
making fprec.d from fprec.c
making fround.d from fround.c
making ftrunc.d from ftrunc.c
making sign.d from sign.c
making fsign.d from fsign.c
making imax2.d from imax2.c
making imin2.d from imin2.c
making chebyshev.d from chebyshev.c
making log1p.d from log1p.c
making expm1.d from expm1.c
making lgammacor.d from lgammacor.c
making gammalims.d from gammalims.c
making stirlerr.d from stirlerr.c
making bd0.d from bd0.c
making gamma.d from gamma.c
making lgamma.d from lgamma.c
making gamma_cody.d from gamma_cody.c
making beta.d from beta.c
making lbeta.d from lbeta.c
making polygamma.d from polygamma.c
making bessel_i.d from bessel_i.c
making bessel_j.d from bessel_j.c
making bessel_k.d from bessel_k.c
making bessel_y.d from bessel_y.c
making choose.d from choose.c
making snorm.d from snorm.c
making sexp.d from sexp.c
making dgamma.d from dgamma.c
making pgamma.d from pgamma.c
making qgamma.d from qgamma.c
making rgamma.d from rgamma.c
making dbeta.d from dbeta.c
making pbeta.d from pbeta.c
making qbeta.d from qbeta.c
making rbeta.d from rbeta.c
making dunif.d from dunif.c
making punif.d from punif.c
making qunif.d from qunif.c
making runif.d from runif.c
making dnorm.d from dnorm.c
making pnorm.d from pnorm.c
making qnorm.d from qnorm.c
making rnorm.d from rnorm.c
making dlnorm.d from dlnorm.c
making plnorm.d from plnorm.c
making qlnorm.d from qlnorm.c
making rlnorm.d from rlnorm.c
making df.d from df.c
making pf.d from pf.c
making qf.d from qf.c
making rf.d from rf.c
making dnf.d from dnf.c
making dt.d from dt.c
making pt.d from pt.c
making qt.d from qt.c
making rt.d from rt.c
making dnt.d from dnt.c
making dchisq.d from dchisq.c
making pchisq.d from pchisq.c
making qchisq.d from qchisq.c
making rchisq.d from rchisq.c
making rnchisq.d from rnchisq.c
making dbinom.d from dbinom.c
making pbinom.d from pbinom.c
making qbinom.d from qbinom.c
making rbinom.d from rbinom.c
making rmultinom.d from rmultinom.c
making dcauchy.d from dcauchy.c
making pcauchy.d from pcauchy.c
making qcauchy.d from qcauchy.c
making rcauchy.d from rcauchy.c
making dexp.d from dexp.c
making pexp.d from pexp.c
making qexp.d from qexp.c
making rexp.d from rexp.c
making dgeom.d from dgeom.c
making pgeom.d from pgeom.c
making qgeom.d from qgeom.c
making rgeom.d from rgeom.c
making dhyper.d from dhyper.c
making phyper.d from phyper.c
making qhyper.d from qhyper.c
making rhyper.d from rhyper.c
making dnbinom.d from dnbinom.c
making pnbinom.d from pnbinom.c
making qnbinom.d from qnbinom.c
making rnbinom.d from rnbinom.c
making dpois.d from dpois.c
making ppois.d from ppois.c
making qpois.d from qpois.c
making rpois.d from rpois.c
making dweibull.d from dweibull.c
making pweibull.d from pweibull.c
making qweibull.d from qweibull.c
making rweibull.d from rweibull.c
making dlogis.d from dlogis.c
making plogis.d from plogis.c
making qlogis.d from qlogis.c
making rlogis.d from rlogis.c
making dnchisq.d from dnchisq.c
making pnchisq.d from pnchisq.c
making qnchisq.d from qnchisq.c
making dnbeta.d from dnbeta.c
making pnbeta.d from pnbeta.c
making qnbeta.d from qnbeta.c
making pnf.d from pnf.c
making pnt.d from pnt.c
making qnf.d from qnf.c
making qnt.d from qnt.c
making ptukey.d from ptukey.c
making qtukey.d from qtukey.c
making toms708.d from toms708.c
making wilcox.d from wilcox.c
making signrank.d from signrank.c
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/nmath'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/nmath'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c mlutils.c -o mlutils.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c d1mach.c -o d1mach.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c i1mach.c -o i1mach.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c fmax2.c -o fmax2.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c fmin2.c -o fmin2.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c fprec.c -o fprec.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c fround.c -o fround.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c ftrunc.c -o ftrunc.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c sign.c -o sign.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c fsign.c -o fsign.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c imax2.c -o imax2.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c imin2.c -o imin2.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c chebyshev.c -o chebyshev.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c log1p.c -o log1p.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c expm1.c -o expm1.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c lgammacor.c -o lgammacor.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c gammalims.c -o gammalims.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c stirlerr.c -o stirlerr.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c bd0.c -o bd0.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c gamma.c -o gamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c lgamma.c -o lgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c gamma_cody.c -o gamma_cody.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c beta.c -o beta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c lbeta.c -o lbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c polygamma.c -o polygamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c bessel_i.c -o bessel_i.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c bessel_j.c -o bessel_j.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c bessel_k.c -o bessel_k.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c bessel_y.c -o bessel_y.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c choose.c -o choose.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c snorm.c -o snorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c sexp.c -o sexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dgamma.c -o dgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c pgamma.c -o pgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qgamma.c -o qgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rgamma.c -o rgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dbeta.c -o dbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c pbeta.c -o pbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qbeta.c -o qbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rbeta.c -o rbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dunif.c -o dunif.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c punif.c -o punif.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qunif.c -o qunif.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c runif.c -o runif.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dnorm.c -o dnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c pnorm.c -o pnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qnorm.c -o qnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rnorm.c -o rnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dlnorm.c -o dlnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c plnorm.c -o plnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qlnorm.c -o qlnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rlnorm.c -o rlnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c df.c -o df.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c pf.c -o pf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qf.c -o qf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rf.c -o rf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dnf.c -o dnf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dt.c -o dt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c pt.c -o pt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qt.c -o qt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rt.c -o rt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dnt.c -o dnt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dchisq.c -o dchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c pchisq.c -o pchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qchisq.c -o qchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rchisq.c -o rchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rnchisq.c -o rnchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dbinom.c -o dbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c pbinom.c -o pbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qbinom.c -o qbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rbinom.c -o rbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rmultinom.c -o rmultinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dcauchy.c -o dcauchy.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c pcauchy.c -o pcauchy.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qcauchy.c -o qcauchy.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rcauchy.c -o rcauchy.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dexp.c -o dexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c pexp.c -o pexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qexp.c -o qexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rexp.c -o rexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dgeom.c -o dgeom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c pgeom.c -o pgeom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qgeom.c -o qgeom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rgeom.c -o rgeom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dhyper.c -o dhyper.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c phyper.c -o phyper.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qhyper.c -o qhyper.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rhyper.c -o rhyper.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dnbinom.c -o dnbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c pnbinom.c -o pnbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qnbinom.c -o qnbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rnbinom.c -o rnbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dpois.c -o dpois.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c ppois.c -o ppois.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qpois.c -o qpois.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rpois.c -o rpois.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dweibull.c -o dweibull.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c pweibull.c -o pweibull.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qweibull.c -o qweibull.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rweibull.c -o rweibull.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dlogis.c -o dlogis.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c plogis.c -o plogis.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qlogis.c -o qlogis.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rlogis.c -o rlogis.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dnchisq.c -o dnchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c pnchisq.c -o pnchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qnchisq.c -o qnchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dnbeta.c -o dnbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c pnbeta.c -o pnbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qnbeta.c -o qnbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c pnf.c -o pnf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c pnt.c -o pnt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qnf.c -o qnf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qnt.c -o qnt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c ptukey.c -o ptukey.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qtukey.c -o qtukey.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c toms708.c -o toms708.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c wilcox.c -o wilcox.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c signrank.c -o signrank.o
rm -rf libnmath.a
ar cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o
ranlib libnmath.a
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/nmath'
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/src/nmath'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/src/unix'
config.status: creating src/unix/Makefile
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/src/unix'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/src/unix'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/unix'
making dynload.d from dynload.c
making edit.d from edit.c
making stubs.d from stubs.c
making system.d from system.c
making sys-unix.d from sys-unix.c
making sys-std.d from sys-std.c
making X11.d from X11.c
making aqua.d from aqua.c
making Rembedded.d from Rembedded.c
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/unix'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dynload.c -o dynload.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c edit.c -o edit.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c stubs.c -o stubs.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c system.c -o system.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c sys-unix.c -o sys-unix.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c sys-std.c -o sys-std.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c X11.c -o X11.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c aqua.c -o aqua.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c Rembedded.c -o Rembedded.o
rm -rf libunix.a
ar cr libunix.a dynload.o edit.o stubs.o system.o sys-unix.o sys-std.o X11.o aqua.o Rembedded.o
ranlib libunix.a
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/unix'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -DR_HOME='"/build/buildd/r-base-2.14.1"' -o Rscript \
	  ./Rscript.c
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/unix'
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/src/unix'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/src/main'
config.status: creating src/main/Makefile
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/src/main'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/src/main'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/main'
making CConverters.d from CConverters.c
making CommandLineArgs.d from CommandLineArgs.c
making Rdynload.d from Rdynload.c
making Renviron.d from Renviron.c
making RNG.d from RNG.c
making agrep.d from agrep.c
making apply.d from apply.c
making arithmetic.d from arithmetic.c
making array.d from array.c
making attrib.d from attrib.c
making base.d from base.c
making bind.d from bind.c
making builtin.d from builtin.c
making character.d from character.c
making coerce.d from coerce.c
making colors.d from colors.c
making complex.d from complex.c
making connections.d from connections.c
making context.d from context.c
making cov.d from cov.c
making cum.d from cum.c
making dcf.d from dcf.c
making datetime.d from datetime.c
making debug.d from debug.c
making deparse.d from deparse.c
making deriv.d from deriv.c
making devices.d from devices.c
making dotcode.d from dotcode.c
making dounzip.d from dounzip.c
making dstruct.d from dstruct.c
making duplicate.d from duplicate.c
making engine.d from engine.c
making envir.d from envir.c
making errors.d from errors.c
making eval.d from eval.c
making format.d from format.c
making fourier.d from fourier.c
making gevents.d from gevents.c
making gram.d from gram.c
making gram-ex.d from gram-ex.c
making gramLatex.d from gramLatex.c
making gramRd.d from gramRd.c
making graphics.d from graphics.c
making grep.d from grep.c
making identical.d from identical.c
making inlined.d from inlined.c
making inspect.d from inspect.c
making internet.d from internet.c
making iosupport.d from iosupport.c
making lapack.d from lapack.c
making list.d from list.c
making localecharset.d from localecharset.c
making logic.d from logic.c
making main.d from main.c
making mapply.d from mapply.c
making match.d from match.c
making memory.d from memory.c
making model.d from model.c
making names.d from names.c
making objects.d from objects.c
making optim.d from optim.c
making optimize.d from optimize.c
making options.d from options.c
making par.d from par.c
making paste.d from paste.c
making platform.d from platform.c
making plot.d from plot.c
making plot3d.d from plot3d.c
making plotmath.d from plotmath.c
making print.d from print.c
making printarray.d from printarray.c
making printvector.d from printvector.c
making printutils.d from printutils.c
making qsort.d from qsort.c
making random.d from random.c
making raw.d from raw.c
making registration.d from registration.c
making relop.d from relop.c
making rlocale.d from rlocale.c
making saveload.d from saveload.c
making scan.d from scan.c
making seq.d from seq.c
making serialize.d from serialize.c
making size.d from size.c
making sort.d from sort.c
making source.d from source.c
making split.d from split.c
making sprintf.d from sprintf.c
making startup.d from startup.c
making subassign.d from subassign.c
making subscript.d from subscript.c
making subset.d from subset.c
making summary.d from summary.c
making sysutils.d from sysutils.c
making unique.d from unique.c
making util.d from util.c
making version.d from version.c
making vfonts.d from vfonts.c
making Rmain.d from Rmain.c
making alloca.d from alloca.c
making mkdtemp.d from mkdtemp.c
making strdup.d from strdup.c
making strncasecmp.d from strncasecmp.c
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/main'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/main'
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c CConverters.c -o CConverters.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c CommandLineArgs.c -o CommandLineArgs.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c Rdynload.c -o Rdynload.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c Renviron.c -o Renviron.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c RNG.c -o RNG.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c agrep.c -o agrep.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c apply.c -o apply.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c arithmetic.c -o arithmetic.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c array.c -o array.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c attrib.c -o attrib.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c base.c -o base.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c bind.c -o bind.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c builtin.c -o builtin.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c character.c -o character.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c coerce.c -o coerce.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c colors.c -o colors.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c complex.c -o complex.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c connections.c -o connections.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c context.c -o context.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c cov.c -o cov.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c cum.c -o cum.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dcf.c -o dcf.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c datetime.c -o datetime.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c debug.c -o debug.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c deparse.c -o deparse.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c deriv.c -o deriv.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c devices.c -o devices.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dotcode.c -o dotcode.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dounzip.c -o dounzip.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dstruct.c -o dstruct.o
dstruct.c: In function 'isDDName':
dstruct.c:127:8: warning: ignoring return value of 'strtol', declared with attribute warn_unused_result [-Wunused-result]
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c duplicate.c -o duplicate.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c engine.c -o engine.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c envir.c -o envir.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c errors.c -o errors.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c eval.c -o eval.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c format.c -o format.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c fourier.c -o fourier.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c gevents.c -o gevents.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c gram.c -o gram.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c gram-ex.c -o gram-ex.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c gramLatex.c -o gramLatex.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c gramRd.c -o gramRd.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c graphics.c -o graphics.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c grep.c -o grep.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c identical.c -o identical.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c inlined.c -o inlined.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c inspect.c -o inspect.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c internet.c -o internet.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c iosupport.c -o iosupport.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c lapack.c -o lapack.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c list.c -o list.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c localecharset.c -o localecharset.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c logic.c -o logic.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c main.c -o main.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c mapply.c -o mapply.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c match.c -o match.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c memory.c -o memory.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c model.c -o model.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c names.c -o names.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c objects.c -o objects.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c optim.c -o optim.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c optimize.c -o optimize.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c options.c -o options.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c par.c -o par.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c paste.c -o paste.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c platform.c -o platform.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c plot.c -o plot.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c plot3d.c -o plot3d.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c plotmath.c -o plotmath.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c print.c -o print.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c printarray.c -o printarray.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c printvector.c -o printvector.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c printutils.c -o printutils.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c qsort.c -o qsort.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c random.c -o random.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c raw.c -o raw.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c registration.c -o registration.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c relop.c -o relop.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rlocale.c -o rlocale.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c saveload.c -o saveload.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c scan.c -o scan.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c seq.c -o seq.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c serialize.c -o serialize.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c size.c -o size.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c sort.c -o sort.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c source.c -o source.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c split.c -o split.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c sprintf.c -o sprintf.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c startup.c -o startup.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c subassign.c -o subassign.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c subscript.c -o subscript.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c subset.c -o subset.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c summary.c -o summary.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c sysutils.c -o sysutils.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c unique.c -o unique.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c util.c -o util.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c version.c -o version.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c vfonts.c -o vfonts.o
gfortran  -fopenmp -fpic  -O3 -pipe  -g -c xxxpr.f -o xxxpr.o
gcc -std=gnu99 -shared -fopenmp -Wl,-O1  -o libR.so CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o apply.o arithmetic.o array.o attrib.o base.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cov.o cum.o dcf.o datetime.o debug.o deparse.o deriv.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o engine.o envir.o errors.o eval.o format.o fourier.o gevents.o gram.o gram-ex.o gramLatex.o gramRd.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o model.o names.o objects.o optim.o optimize.o options.o par.o paste.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o size.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o unique.o util.o version.o vfonts.o xxxpr.o   ../unix/Rembedded.o ../unix/libunix.a ../appl/libappl.a ../nmath/libnmath.a    ../extra/tre/libtre.a    -lblas -lgfortran -lm -lquadmath   -lreadline  -lpcre -llzma -lbz2 -lz -lrt -ldl -lm  
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/main'
mkdir -p -- /build/buildd/r-base-2.14.1/bin/exec
mkdir -p -- /build/buildd/r-base-2.14.1/lib
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/main'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/main'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/main'
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c Rmain.c -o Rmain.o
gcc -std=gnu99 -Wl,--export-dynamic -fopenmp  -Wl,-O1 -o R.bin Rmain.o -L../../lib -lR 
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/main'
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/main'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/main'
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/src/main'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/src/modules'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/internet'
making Rhttpd.d from Rhttpd.c
making Rsock.d from Rsock.c
making internet.d from internet.c
making nanoftp.d from nanoftp.c
making nanohttp.d from nanohttp.c
making sock.d from sock.c
making sockconn.d from sockconn.c
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/internet'
make[5]: `Makedeps' is up to date.
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/internet'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/internet'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -fvisibility=hidden -c Rhttpd.c -o Rhttpd.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -fvisibility=hidden -c Rsock.c -o Rsock.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -fvisibility=hidden -c internet.c -o internet.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -fvisibility=hidden -c nanoftp.c -o nanoftp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -fvisibility=hidden -c nanohttp.c -o nanohttp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -fvisibility=hidden -c sock.c -o sock.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -fvisibility=hidden -c sockconn.c -o sockconn.o
gcc -std=gnu99 -shared -Wl,-O1 -o internet.so Rhttpd.o Rsock.o internet.o nanoftp.o nanohttp.o sock.o sockconn.o -L../../../lib -lR 
make[6]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/internet'
mkdir -p -- /build/buildd/r-base-2.14.1/modules
make[6]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/internet'
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/internet'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/internet'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/lapack'
making Lapack.d from Lapack.c
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/lapack'
make[5]: `Makedeps' is up to date.
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/lapack'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/lapack'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c Lapack.c -o Lapack.o
gcc -std=gnu99 -shared -Wl,-O1 -o lapack.so  Lapack.o  -L../../../lib -lR  -llapack -lblas -lgfortran -lm -lquadmath
make[6]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/lapack'
make[6]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/lapack'
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/lapack'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/lapack'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/vfonts'
making g_alab_her.d from g_alab_her.c
making g_cntrlify.d from g_cntrlify.c
making g_fontdb.d from g_fontdb.c
making g_her_glyph.d from g_her_glyph.c
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/vfonts'
make[5]: `Makedeps' is up to date.
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/vfonts'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/vfonts'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c g_alab_her.c -o g_alab_her.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c g_cntrlify.c -o g_cntrlify.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c g_fontdb.c -o g_fontdb.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c g_her_glyph.c -o g_her_glyph.o
gcc -std=gnu99 -shared -Wl,-O1 -o vfonts.so g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o -L../../../lib -lR -lm 
make[6]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/vfonts'
make[6]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/vfonts'
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/vfonts'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/vfonts'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/X11'
making dataentry.d from dataentry.c
making devX11.d from devX11.c
making rotated.d from rotated.c
making rbitmap.d from rbitmap.c
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/X11'
make[5]: `Makedeps' is up to date.
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/X11'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/X11'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c dataentry.c -o dataentry.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c devX11.c -o devX11.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rotated.c -o rotated.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c rbitmap.c -o rbitmap.o
gcc -std=gnu99 -shared -Wl,-O1 -o R_X11.so dataentry.o devX11.o rotated.o rbitmap.o -lSM -lICE -pthread -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lgmodule-2.0 -lrt -lglib-2.0 -lpng12 -lz -lcairo -lX11   -lX11 -lXt  -ltiff -ljpeg -lpng -lz -L../../../lib -lR -lm 
make[6]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/X11'
make[6]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/X11'
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/X11'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/X11'
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/src/library'
mkdir -p -- ../../library
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/library/profile'
building system startup profile
mkdir -p -- ../../../library/base/R
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/profile'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/library/base'
building package 'base'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/base'
mkdir -p -- ../../../library/base/demo
mkdir -p -- ../../../library/base/po
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/base'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/base'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/library/tools'
building package 'tools'
mkdir -p -- ../../../library/tools
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/tools'
mkdir -p -- ../../../library/tools/R
mkdir -p -- ../../../library/tools/po
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/tools'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/tools'
make[6]: Entering directory `/build/buildd/r-base-2.14.1/src/library/tools/src'
making text.d from text.c
making init.d from init.c
making Rmd5.d from Rmd5.c
making md5.d from md5.c
making signals.d from signals.c
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -O3 -pipe  -g -c text.c -o text.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -O3 -pipe  -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -O3 -pipe  -g -c Rmd5.c -o Rmd5.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -O3 -pipe  -g -c md5.c -o md5.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -O3 -pipe  -g -c signals.c -o signals.o
gcc -std=gnu99 -shared -Wl,-O1 -o tools.so text.o init.o Rmd5.o md5.o signals.o -L../../../../lib -lR
make[7]: Entering directory `/build/buildd/r-base-2.14.1/src/library/tools/src'
make[7]: `Makedeps' is up to date.
make[7]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/tools/src'
make[7]: Entering directory `/build/buildd/r-base-2.14.1/src/library/tools/src'
mkdir -p -- ../../../../library/tools/libs
make[7]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/tools/src'
make[6]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/tools/src'
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/tools'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/tools'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/library/compiler'
building package 'compiler'
mkdir -p -- ../../../library/compiler
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/compiler'
mkdir -p -- ../../../library/compiler/R
mkdir -p -- ../../../library/compiler/po
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/compiler'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/compiler'
byte-compiling package 'compiler'
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/compiler'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/compiler'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/library/base'
byte-compiling package 'base'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/base'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/library/tools'
byte-compiling package 'tools'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/tools'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/library/utils'
building package 'utils'
mkdir -p -- ../../../library/utils
mkdir -p -- ../../../library/utils/doc
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/utils'
mkdir -p -- ../../../library/utils/R
mkdir -p -- ../../../library/utils/po
mkdir -p -- ../../../library/utils/Sweave
mkdir -p -- ../../../library/utils/misc
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/utils'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/utils'
byte-compiling package 'utils'
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/utils'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/utils'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/library/grDevices'
building package 'grDevices'
mkdir -p -- ../../../library/grDevices
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/grDevices'
mkdir -p -- ../../../library/grDevices/R
mkdir -p -- ../../../library/grDevices/po
mkdir -p -- ../../../library/grDevices/afm
mkdir -p -- ../../../library/grDevices/enc
mkdir -p -- ../../../library/grDevices/icc
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/grDevices'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/grDevices'
make[6]: Entering directory `/build/buildd/r-base-2.14.1/src/library/grDevices/src'
making axis_scales.d from axis_scales.c
making chull.d from chull.c
making devCairo.d from devCairo.c
making devNull.d from devNull.c
making devPicTeX.d from devPicTeX.c
making devPS.d from devPS.c
making devQuartz.d from devQuartz.c
making init.d from init.c
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -O3 -pipe  -g -c axis_scales.c -o axis_scales.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -O3 -pipe  -g -c chull.c -o chull.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -O3 -pipe  -g -c devCairo.c -o devCairo.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -O3 -pipe  -g -c devNull.c -o devNull.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -O3 -pipe  -g -c devPicTeX.c -o devPicTeX.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -O3 -pipe  -g -c devPS.c -o devPS.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -O3 -pipe  -g -c devQuartz.c -o devQuartz.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -O3 -pipe  -g -c init.c -o init.o
gcc -std=gnu99 -shared -Wl,-O1 -o grDevices.so axis_scales.o chull.o devCairo.o devNull.o devPicTeX.o devPS.o devQuartz.o init.o -lz -L../../../../lib -lR
make[7]: Entering directory `/build/buildd/r-base-2.14.1/src/library/grDevices/src'
make[7]: `Makedeps' is up to date.
make[7]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/grDevices/src'
make[7]: Entering directory `/build/buildd/r-base-2.14.1/src/library/grDevices/src'
mkdir -p -- ../../../../library/grDevices/libs
make[8]: Entering directory `/build/buildd/r-base-2.14.1/src/library/grDevices/src/cairo'
making cairoBM.d from cairoBM.c
make[9]: Entering directory `/build/buildd/r-base-2.14.1/src/library/grDevices/src/cairo'
make[9]: `Makedeps' is up to date.
make[9]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/grDevices/src/cairo'
make[9]: Entering directory `/build/buildd/r-base-2.14.1/src/library/grDevices/src/cairo'
make[10]: Entering directory `/build/buildd/r-base-2.14.1/src/library/grDevices/src/cairo'
gcc -std=gnu99 -I. -I../../../../../src/include -I../../../../../src/include -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../../../src/modules/X11  -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -c cairoBM.c -o cairoBM.o
gcc -std=gnu99 -shared -Wl,-O1 -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -pthread -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lgmodule-2.0 -lrt -lglib-2.0 -lpng12 -lz -lcairo   -ltiff -ljpeg -lpng -lz -L../../../../../lib -lR -lm 
make[10]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/grDevices/src/cairo'
make[9]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/grDevices/src/cairo'
make[8]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/grDevices/src/cairo'
make[7]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/grDevices/src'
make[6]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/grDevices/src'
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/grDevices'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/grDevices'
byte-compiling package 'grDevices'
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/grDevices'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/grDevices'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/library/graphics'
building package 'graphics'
mkdir -p -- ../../../library/graphics
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/graphics'
mkdir -p -- ../../../library/graphics/R
mkdir -p -- ../../../library/graphics/po
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/graphics'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/graphics'
byte-compiling package 'graphics'
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/graphics'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/graphics'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/library/stats'
building package 'stats'
mkdir -p -- ../../../library/stats
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/stats'
mkdir -p -- ../../../library/stats/R
mkdir -p -- ../../../library/stats/po
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/stats'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/stats'
make[6]: Entering directory `/build/buildd/r-base-2.14.1/src/library/stats/src'
making init.d from init.c
making kmeans.d from kmeans.c
making ansari.d from ansari.c
making bandwidths.d from bandwidths.c
making chisqsim.d from chisqsim.c
making d2x2xk.d from d2x2xk.c
making fexact.d from fexact.c
making kendall.d from kendall.c
making ks.d from ks.c
making line.d from line.c
making smooth.d from smooth.c
making prho.d from prho.c
making swilk.d from swilk.c
making ksmooth.d from ksmooth.c
making loessc.d from loessc.c
making monoSpl.d from monoSpl.c
making isoreg.d from isoreg.c
making Srunmed.d from Srunmed.c
making Trunmed.d from Trunmed.c
making dblcen.d from dblcen.c
making distance.d from distance.c
making hclust-utils.d from hclust-utils.c
making nls.d from nls.c
making HoltWinters.d from HoltWinters.c
making PPsum.d from PPsum.c
making arima.d from arima.c
making burg.d from burg.c
making filter.d from filter.c
making mAR.d from mAR.c
making pacf.d from pacf.c
making starma.d from starma.c
making port.d from port.c
making family.d from family.c
making sbart.d from sbart.c
making approx.d from approx.c
making loglin.d from loglin.c
making lowess.d from lowess.c
making massdist.d from massdist.c
making splines.d from splines.c
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c kmeans.c -o kmeans.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c ansari.c -o ansari.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c bandwidths.c -o bandwidths.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c chisqsim.c -o chisqsim.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c d2x2xk.c -o d2x2xk.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c fexact.c -o fexact.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c kendall.c -o kendall.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c ks.c -o ks.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c line.c -o line.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c smooth.c -o smooth.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c prho.c -o prho.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c swilk.c -o swilk.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c ksmooth.c -o ksmooth.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c loessc.c -o loessc.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c monoSpl.c -o monoSpl.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c isoreg.c -o isoreg.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c Srunmed.c -o Srunmed.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c Trunmed.c -o Trunmed.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c dblcen.c -o dblcen.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c distance.c -o distance.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c hclust-utils.c -o hclust-utils.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c nls.c -o nls.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c HoltWinters.c -o HoltWinters.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c PPsum.c -o PPsum.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c arima.c -o arima.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c burg.c -o burg.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c filter.c -o filter.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c mAR.c -o mAR.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c pacf.c -o pacf.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c starma.c -o starma.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c port.c -o port.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c family.c -o family.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c sbart.c -o sbart.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c approx.c -o approx.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c loglin.c -o loglin.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c lowess.c -o lowess.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c massdist.c -o massdist.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -O3 -pipe  -g -c splines.c -o splines.o
gfortran  -fvisibility=hidden -fpic  -O3 -pipe  -g -c bsplvd.f -o bsplvd.o
gfortran  -fvisibility=hidden -fpic  -O3 -pipe  -g -c bvalue.f -o bvalue.o
gfortran  -fvisibility=hidden -fpic  -O3 -pipe  -g -c bvalus.f -o bvalus.o
gfortran  -fvisibility=hidden -fpic  -O3 -pipe  -g -c loessf.f -o loessf.o
gfortran  -fvisibility=hidden -fpic  -O3 -pipe  -g -c ppr.f -o ppr.o
gfortran  -fvisibility=hidden -fpic  -O3 -pipe  -g -c qsbart.f -o qsbart.o
gfortran  -fvisibility=hidden -fpic  -O3 -pipe  -g -c sgram.f -o sgram.o
gfortran  -fvisibility=hidden -fpic  -O3 -pipe  -g -c sinerp.f -o sinerp.o
gfortran  -fvisibility=hidden -fpic  -O3 -pipe  -g -c sslvrg.f -o sslvrg.o
gfortran  -fvisibility=hidden -fpic  -O3 -pipe  -g -c stxwx.f -o stxwx.o
gfortran  -fvisibility=hidden -fpic  -O3 -pipe  -g -c hclust.f -o hclust.o
gfortran  -fvisibility=hidden -fpic  -O3 -pipe  -g -c kmns.f -o kmns.o
gfortran  -fvisibility=hidden -fpic  -O3 -pipe  -g -c eureka.f -o eureka.o
gfortran  -fvisibility=hidden -fpic  -O3 -pipe  -g -c stl.f -o stl.o
gfortran -fpic  -O3 -pipe  -g -ffloat-store -c portsrc.f -o portsrc.o
gfortran  -fvisibility=hidden -fpic  -O3 -pipe  -g -c lminfl.f -o lminfl.o
gcc -std=gnu99 -shared -Wl,-O1 -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o Trunmed.o dblcen.o distance.o hclust-utils.o nls.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -lblas -lgfortran -lm -lquadmath -L../../../../lib -lR
make[7]: Entering directory `/build/buildd/r-base-2.14.1/src/library/stats/src'
make[7]: `Makedeps' is up to date.
make[7]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/stats/src'
make[7]: Entering directory `/build/buildd/r-base-2.14.1/src/library/stats/src'
mkdir -p -- ../../../../library/stats/libs
make[7]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/stats/src'
make[6]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/stats/src'
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/stats'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/stats'
byte-compiling package 'stats'
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/stats'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/stats'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/library/datasets'
building package 'datasets'
mkdir -p -- ../../../library/datasets
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/datasets'
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/datasets'
mkdir -p -- ../../../library/datasets/data
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/datasets'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/library/methods'
building package 'methods'
mkdir -p -- ../../../library/methods
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/methods'
mkdir -p -- ../../../library/methods/R
mkdir -p -- ../../../library/methods/po
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/methods'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/methods'
make[6]: Entering directory `/build/buildd/r-base-2.14.1/src/library/methods/src'
making do_substitute_direct.d from do_substitute_direct.c
making init.d from init.c
making methods_list_dispatch.d from methods_list_dispatch.c
making slot.d from slot.c
making class_support.d from class_support.c
making tests.d from tests.c
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -O3 -pipe  -g -c do_substitute_direct.c -o do_substitute_direct.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -O3 -pipe  -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -O3 -pipe  -g -c methods_list_dispatch.c -o methods_list_dispatch.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -O3 -pipe  -g -c slot.c -o slot.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -O3 -pipe  -g -c class_support.c -o class_support.o
gcc -std=gnu99 -I../../../../include -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -O3 -pipe  -g -c tests.c -o tests.o
gcc -std=gnu99 -shared -Wl,-O1 -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o -L../../../../lib -lR
make[7]: Entering directory `/build/buildd/r-base-2.14.1/src/library/methods/src'
make[7]: `Makedeps' is up to date.
make[7]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/methods/src'
make[7]: Entering directory `/build/buildd/r-base-2.14.1/src/library/methods/src'
mkdir -p -- ../../../../library/methods/libs
make[7]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/methods/src'
make[6]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/methods/src'
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/methods'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/methods'
byte-compiling 'methods'
initializing class and method definitions ...done
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/methods'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/methods'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/library/grid'
building package 'grid'
mkdir -p -- ../../../library/grid
mkdir -p -- ../../../library/grid/doc
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/grid'
mkdir -p -- ../../../library/grid/R
mkdir -p -- ../../../library/grid/po
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/grid'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/grid'
make[6]: Entering directory `/build/buildd/r-base-2.14.1/src/library/grid/src'
making gpar.d from gpar.c
making grid.d from grid.c
making just.d from just.c
making layout.d from layout.c
making matrix.d from matrix.c
making register.d from register.c
making state.d from state.c
making unit.d from unit.c
making util.d from util.c
making viewport.d from viewport.c
gcc -std=gnu99 -I../../../../include     -fvisibility=hidden -fpic  -O3 -pipe  -g -c gpar.c -o gpar.o
gcc -std=gnu99 -I../../../../include     -fvisibility=hidden -fpic  -O3 -pipe  -g -c grid.c -o grid.o
gcc -std=gnu99 -I../../../../include     -fvisibility=hidden -fpic  -O3 -pipe  -g -c just.c -o just.o
gcc -std=gnu99 -I../../../../include     -fvisibility=hidden -fpic  -O3 -pipe  -g -c layout.c -o layout.o
gcc -std=gnu99 -I../../../../include     -fvisibility=hidden -fpic  -O3 -pipe  -g -c matrix.c -o matrix.o
gcc -std=gnu99 -I../../../../include     -fvisibility=hidden -fpic  -O3 -pipe  -g -c register.c -o register.o
gcc -std=gnu99 -I../../../../include     -fvisibility=hidden -fpic  -O3 -pipe  -g -c state.c -o state.o
gcc -std=gnu99 -I../../../../include     -fvisibility=hidden -fpic  -O3 -pipe  -g -c unit.c -o unit.o
gcc -std=gnu99 -I../../../../include     -fvisibility=hidden -fpic  -O3 -pipe  -g -c util.c -o util.o
gcc -std=gnu99 -I../../../../include     -fvisibility=hidden -fpic  -O3 -pipe  -g -c viewport.c -o viewport.o
gcc -std=gnu99 -shared -Wl,-O1 -o grid.so gpar.o grid.o just.o layout.o matrix.o register.o state.o unit.o util.o viewport.o -L../../../../lib -lR
make[7]: Entering directory `/build/buildd/r-base-2.14.1/src/library/grid/src'
make[7]: `Makedeps' is up to date.
make[7]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/grid/src'
make[7]: Entering directory `/build/buildd/r-base-2.14.1/src/library/grid/src'
mkdir -p -- ../../../../library/grid/libs
make[7]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/grid/src'
make[6]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/grid/src'
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/grid'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/grid'
byte-compiling package 'grid'
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/grid'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/grid'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/library/splines'
building package 'splines'
mkdir -p -- ../../../library/splines
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/splines'
mkdir -p -- ../../../library/splines/R
mkdir -p -- ../../../library/splines/po
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/splines'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/splines'
make[6]: Entering directory `/build/buildd/r-base-2.14.1/src/library/splines/src'
making splines.d from splines.c
gcc -std=gnu99 -I../../../../include      -fpic  -O3 -pipe  -g -c splines.c -o splines.o
gcc -std=gnu99 -shared -Wl,-O1 -o splines.so splines.o -L../../../../lib -lR
make[7]: Entering directory `/build/buildd/r-base-2.14.1/src/library/splines/src'
make[7]: `Makedeps' is up to date.
make[7]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/splines/src'
make[7]: Entering directory `/build/buildd/r-base-2.14.1/src/library/splines/src'
mkdir -p -- ../../../../library/splines/libs
make[7]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/splines/src'
make[6]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/splines/src'
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/splines'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/splines'
byte-compiling package 'splines'
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/splines'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/splines'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/library/stats4'
building package 'stats4'
mkdir -p -- ../../../library/stats4
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/stats4'
mkdir -p -- ../../../library/stats4/R
mkdir -p -- ../../../library/stats4/po
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/stats4'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/stats4'
byte-compiling package 'stats4'
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/stats4'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/stats4'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/library/tcltk'
building package 'tcltk'
mkdir -p -- ../../../library/tcltk/R
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/tcltk'
mkdir -p -- ../../../library/tcltk/exec
mkdir -p -- ../../../library/tcltk/po
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/tcltk'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/tcltk/src'
making init.d from init.c
making tcltk.d from tcltk.c
making tcltk_unix.d from tcltk_unix.c
gcc -std=gnu99 -I../../../../include -I/usr/include/tcl8.5 -I/usr/include/tcl8.5      -fpic  -O3 -pipe  -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -I/usr/include/tcl8.5 -I/usr/include/tcl8.5      -fpic  -O3 -pipe  -g -c tcltk.c -o tcltk.o
gcc -std=gnu99 -I../../../../include -I/usr/include/tcl8.5 -I/usr/include/tcl8.5      -fpic  -O3 -pipe  -g -c tcltk_unix.c -o tcltk_unix.o
gcc -std=gnu99 -shared -Wl,-O1 -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/lib -ltcl8.5 -L/usr/lib -ltk8.5 -lX11 -lXss -lXext -lm -L../../../../lib -lR
make[6]: Entering directory `/build/buildd/r-base-2.14.1/src/library/tcltk/src'
make[6]: `Makedeps' is up to date.
make[6]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/tcltk/src'
make[6]: Entering directory `/build/buildd/r-base-2.14.1/src/library/tcltk/src'
mkdir -p -- ../../../../library/tcltk/libs
make[6]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/tcltk/src'
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/tcltk/src'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/tcltk'
byte-compiling package 'tcltk'
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/tcltk'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/tcltk'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/library/parallel'
building package 'parallel'
mkdir -p -- ../../../library/parallel
mkdir -p -- ../../../library/parallel/doc
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/parallel'
mkdir -p -- ../../../library/parallel/R
mkdir -p -- ../../../library/parallel/po
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/parallel'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/parallel'
make[6]: Entering directory `/build/buildd/r-base-2.14.1/src/library/parallel/src'
making init.d from init.c
making rngstream.d from rngstream.c
making fork.d from fork.c
gcc -std=gnu99 -I../../../../include     -fvisibility=hidden -fpic  -O3 -pipe  -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include     -fvisibility=hidden -fpic  -O3 -pipe  -g -c rngstream.c -o rngstream.o
gcc -std=gnu99 -I../../../../include     -fvisibility=hidden -fpic  -O3 -pipe  -g -c fork.c -o fork.o
fork.c: In function 'mc_exit':
fork.c:562:7: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
gcc -std=gnu99 -shared -Wl,-O1 -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR
make[7]: Entering directory `/build/buildd/r-base-2.14.1/src/library/parallel/src'
make[7]: `Makedeps' is up to date.
make[7]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/parallel/src'
make[7]: Entering directory `/build/buildd/r-base-2.14.1/src/library/parallel/src'
mkdir -p -- ../../../../library/parallel/libs
make[7]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/parallel/src'
make[6]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/parallel/src'
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/parallel'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/parallel'
byte-compiling package 'parallel'
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/parallel'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/parallel'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/library/base'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/base'
installing parsed NAMESPACE files
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/src/library'
make[2]: Leaving directory `/build/buildd/r-base-2.14.1/src'
make[2]: Entering directory `/build/buildd/r-base-2.14.1/tests'
make[2]: Nothing to be done for `R'.
make[2]: Leaving directory `/build/buildd/r-base-2.14.1/tests'
make[2]: Entering directory `/build/buildd/r-base-2.14.1/po'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/po'
installing translations:
mkdir -p -- ../share/locale/en/LC_MESSAGES
  en
mkdir -p -- ../share/locale/en_GB/LC_MESSAGES
  en_GB
mkdir -p -- ../share/locale/es/LC_MESSAGES
  es
mkdir -p -- ../share/locale/fr/LC_MESSAGES
  fr
mkdir -p -- ../share/locale/de/LC_MESSAGES
  de
mkdir -p -- ../share/locale/it/LC_MESSAGES
  it
mkdir -p -- ../share/locale/ja/LC_MESSAGES
  ja
mkdir -p -- ../share/locale/ko/LC_MESSAGES
  ko
mkdir -p -- ../share/locale/nn/LC_MESSAGES
  nn
mkdir -p -- ../share/locale/pt_BR/LC_MESSAGES
  pt_BR
mkdir -p -- ../share/locale/ru/LC_MESSAGES
  ru
mkdir -p -- ../share/locale/tr/LC_MESSAGES
  tr
mkdir -p -- ../share/locale/zh_CN/LC_MESSAGES
  zh_CN
mkdir -p -- ../share/locale/zh_TW/LC_MESSAGES
  zh_TW
mkdir -p -- ../share/locale/en@quot/LC_MESSAGES
  en@quot
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/po'
make[2]: Leaving directory `/build/buildd/r-base-2.14.1/po'
you should 'make docs' now ...
make[1]: Leaving directory `/build/buildd/r-base-2.14.1'
(cd src/nmath/standalone;				\
		/usr/bin/make	CFLAGS="-O3 -pipe  -g -D_REENTRANT"		\
			CXXFLAGS="-O3 -pipe  -g -D_REENTRANT"	\
			FFLAGS="-O3 -pipe  -g -D_REENTRANT"	\
			CC="gcc -std=gnu99"				\
			CXX=g++			\
			F77=gfortran			\
			libRmath_la_LDFLAGS=-Wl,-soname,libRmath.so.1 \
			shared static )
make[1]: Entering directory `/build/buildd/r-base-2.14.1/src/nmath/standalone'
(cd ../../include; /usr/bin/make Rmath.h)
make[2]: Entering directory `/build/buildd/r-base-2.14.1/src/include'
make[2]: `Rmath.h' is up to date.
make[2]: Leaving directory `/build/buildd/r-base-2.14.1/src/include'
Copying source files
make[2]: Entering directory `/build/buildd/r-base-2.14.1/src/nmath/standalone'
making mlutils.d from mlutils.c
making d1mach.d from d1mach.c
making i1mach.d from i1mach.c
making fmax2.d from fmax2.c
making fmin2.d from fmin2.c
making fprec.d from fprec.c
making fround.d from fround.c
making ftrunc.d from ftrunc.c
making sign.d from sign.c
making fsign.d from fsign.c
making imax2.d from imax2.c
making imin2.d from imin2.c
making chebyshev.d from chebyshev.c
making log1p.d from log1p.c
making expm1.d from expm1.c
making lgammacor.d from lgammacor.c
making gammalims.d from gammalims.c
making stirlerr.d from stirlerr.c
making bd0.d from bd0.c
making gamma.d from gamma.c
making lgamma.d from lgamma.c
making gamma_cody.d from gamma_cody.c
making beta.d from beta.c
making lbeta.d from lbeta.c
making polygamma.d from polygamma.c
making bessel_i.d from bessel_i.c
making bessel_j.d from bessel_j.c
making bessel_k.d from bessel_k.c
making bessel_y.d from bessel_y.c
making choose.d from choose.c
making snorm.d from snorm.c
making sexp.d from sexp.c
making dgamma.d from dgamma.c
making pgamma.d from pgamma.c
making qgamma.d from qgamma.c
making rgamma.d from rgamma.c
making dbeta.d from dbeta.c
making pbeta.d from pbeta.c
making qbeta.d from qbeta.c
making rbeta.d from rbeta.c
making dunif.d from dunif.c
making punif.d from punif.c
making qunif.d from qunif.c
making runif.d from runif.c
making dnorm.d from dnorm.c
making pnorm.d from pnorm.c
making qnorm.d from qnorm.c
making rnorm.d from rnorm.c
making dlnorm.d from dlnorm.c
making plnorm.d from plnorm.c
making qlnorm.d from qlnorm.c
making rlnorm.d from rlnorm.c
making df.d from df.c
making pf.d from pf.c
making qf.d from qf.c
making rf.d from rf.c
making dnf.d from dnf.c
making dt.d from dt.c
making pt.d from pt.c
making qt.d from qt.c
making rt.d from rt.c
making dnt.d from dnt.c
making dchisq.d from dchisq.c
making pchisq.d from pchisq.c
making qchisq.d from qchisq.c
making rchisq.d from rchisq.c
making rnchisq.d from rnchisq.c
making dbinom.d from dbinom.c
making pbinom.d from pbinom.c
making qbinom.d from qbinom.c
making rbinom.d from rbinom.c
making rmultinom.d from rmultinom.c
making dcauchy.d from dcauchy.c
making pcauchy.d from pcauchy.c
making qcauchy.d from qcauchy.c
making rcauchy.d from rcauchy.c
making dexp.d from dexp.c
making pexp.d from pexp.c
making qexp.d from qexp.c
making rexp.d from rexp.c
making dgeom.d from dgeom.c
making pgeom.d from pgeom.c
making qgeom.d from qgeom.c
making rgeom.d from rgeom.c
making dhyper.d from dhyper.c
making phyper.d from phyper.c
making qhyper.d from qhyper.c
making rhyper.d from rhyper.c
making dnbinom.d from dnbinom.c
making pnbinom.d from pnbinom.c
making qnbinom.d from qnbinom.c
making rnbinom.d from rnbinom.c
making dpois.d from dpois.c
making ppois.d from ppois.c
making qpois.d from qpois.c
making rpois.d from rpois.c
making dweibull.d from dweibull.c
making pweibull.d from pweibull.c
making qweibull.d from qweibull.c
making rweibull.d from rweibull.c
making dlogis.d from dlogis.c
making plogis.d from plogis.c
making qlogis.d from qlogis.c
making rlogis.d from rlogis.c
making dnchisq.d from dnchisq.c
making pnchisq.d from pnchisq.c
making qnchisq.d from qnchisq.c
making dnbeta.d from dnbeta.c
making pnbeta.d from pnbeta.c
making qnbeta.d from qnbeta.c
making pnf.d from pnf.c
making pnt.d from pnt.c
making qnf.d from qnf.c
making qnt.d from qnt.c
making ptukey.d from ptukey.c
making qtukey.d from qtukey.c
making toms708.d from toms708.c
making wilcox.d from wilcox.c
making signrank.d from signrank.c
making std_unif.d from std_unif.c
make[2]: Leaving directory `/build/buildd/r-base-2.14.1/src/nmath/standalone'
make[2]: Entering directory `/build/buildd/r-base-2.14.1/src/nmath/standalone'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c mlutils.c -o mlutils.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c d1mach.c -o d1mach.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c i1mach.c -o i1mach.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c fmax2.c -o fmax2.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c fmin2.c -o fmin2.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c fprec.c -o fprec.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c fround.c -o fround.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c ftrunc.c -o ftrunc.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c sign.c -o sign.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c fsign.c -o fsign.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c imax2.c -o imax2.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c imin2.c -o imin2.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c chebyshev.c -o chebyshev.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c log1p.c -o log1p.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c expm1.c -o expm1.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c lgammacor.c -o lgammacor.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c gammalims.c -o gammalims.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c stirlerr.c -o stirlerr.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c bd0.c -o bd0.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c gamma.c -o gamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c lgamma.c -o lgamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c gamma_cody.c -o gamma_cody.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c beta.c -o beta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c lbeta.c -o lbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c polygamma.c -o polygamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c bessel_i.c -o bessel_i.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c bessel_j.c -o bessel_j.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c bessel_k.c -o bessel_k.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c bessel_y.c -o bessel_y.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c choose.c -o choose.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c snorm.c -o snorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c sexp.c -o sexp.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c dgamma.c -o dgamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c pgamma.c -o pgamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qgamma.c -o qgamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c rgamma.c -o rgamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c dbeta.c -o dbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c pbeta.c -o pbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qbeta.c -o qbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c rbeta.c -o rbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c dunif.c -o dunif.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c punif.c -o punif.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qunif.c -o qunif.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c runif.c -o runif.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c dnorm.c -o dnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c pnorm.c -o pnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qnorm.c -o qnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c rnorm.c -o rnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c dlnorm.c -o dlnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c plnorm.c -o plnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qlnorm.c -o qlnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c rlnorm.c -o rlnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c df.c -o df.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c pf.c -o pf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qf.c -o qf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c rf.c -o rf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c dnf.c -o dnf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c dt.c -o dt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c pt.c -o pt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qt.c -o qt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c rt.c -o rt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c dnt.c -o dnt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c dchisq.c -o dchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c pchisq.c -o pchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qchisq.c -o qchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c rchisq.c -o rchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c rnchisq.c -o rnchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c dbinom.c -o dbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c pbinom.c -o pbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qbinom.c -o qbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c rbinom.c -o rbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c rmultinom.c -o rmultinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c dcauchy.c -o dcauchy.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c pcauchy.c -o pcauchy.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qcauchy.c -o qcauchy.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c rcauchy.c -o rcauchy.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c dexp.c -o dexp.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c pexp.c -o pexp.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qexp.c -o qexp.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c rexp.c -o rexp.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c dgeom.c -o dgeom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c pgeom.c -o pgeom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qgeom.c -o qgeom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c rgeom.c -o rgeom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c dhyper.c -o dhyper.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c phyper.c -o phyper.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qhyper.c -o qhyper.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c rhyper.c -o rhyper.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c dnbinom.c -o dnbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c pnbinom.c -o pnbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qnbinom.c -o qnbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c rnbinom.c -o rnbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c dpois.c -o dpois.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c ppois.c -o ppois.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qpois.c -o qpois.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c rpois.c -o rpois.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c dweibull.c -o dweibull.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c pweibull.c -o pweibull.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qweibull.c -o qweibull.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c rweibull.c -o rweibull.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c dlogis.c -o dlogis.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c plogis.c -o plogis.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qlogis.c -o qlogis.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c rlogis.c -o rlogis.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c dnchisq.c -o dnchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c pnchisq.c -o pnchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qnchisq.c -o qnchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c dnbeta.c -o dnbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c pnbeta.c -o pnbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qnbeta.c -o qnbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c pnf.c -o pnf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c pnt.c -o pnt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qnf.c -o qnf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qnt.c -o qnt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c ptukey.c -o ptukey.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c qtukey.c -o qtukey.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c toms708.c -o toms708.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c wilcox.c -o wilcox.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c signrank.c -o signrank.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -c std_unif.c -o std_unif.lo
gcc -std=gnu99 -shared -fopenmp  -o libRmath.so -Wl,-soname,libRmath.so.1 mlutils.lo d1mach.lo i1mach.lo fmax2.lo fmin2.lo fprec.lo fround.lo ftrunc.lo sign.lo fsign.lo imax2.lo imin2.lo chebyshev.lo log1p.lo expm1.lo lgammacor.lo gammalims.lo stirlerr.lo bd0.lo gamma.lo lgamma.lo gamma_cody.lo beta.lo lbeta.lo polygamma.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_y.lo choose.lo snorm.lo sexp.lo dgamma.lo pgamma.lo qgamma.lo rgamma.lo dbeta.lo pbeta.lo qbeta.lo rbeta.lo dunif.lo punif.lo qunif.lo runif.lo dnorm.lo pnorm.lo qnorm.lo rnorm.lo dlnorm.lo plnorm.lo qlnorm.lo rlnorm.lo df.lo pf.lo qf.lo rf.lo dnf.lo dt.lo pt.lo qt.lo rt.lo dnt.lo dchisq.lo pchisq.lo qchisq.lo rchisq.lo rnchisq.lo dbinom.lo pbinom.lo qbinom.lo rbinom.lo rmultinom.lo dcauchy.lo pcauchy.lo qcauchy.lo rcauchy.lo dexp.lo pexp.lo qexp.lo rexp.lo dgeom.lo pgeom.lo qgeom.lo rgeom.lo dhyper.lo phyper.lo qhyper.lo rhyper.lo dnbinom.lo pnbinom.lo qnbinom.lo rnbinom.lo dpois.lo ppois.lo qpois.lo rpois.lo dweibull.lo pweibull.lo qweibull.lo rweibull.lo dlogis.lo plogis.lo qlogis.lo rlogis.lo dnchisq.lo pnchisq.lo qnchisq.lo dnbeta.lo pnbeta.lo qnbeta.lo pnf.lo pnt.lo qnf.lo qnt.lo ptukey.lo qtukey.lo toms708.lo wilcox.lo signrank.lo std_unif.lo
make[2]: Leaving directory `/build/buildd/r-base-2.14.1/src/nmath/standalone'
make[2]: Entering directory `/build/buildd/r-base-2.14.1/src/nmath/standalone'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c mlutils.c -o mlutils.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c d1mach.c -o d1mach.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c i1mach.c -o i1mach.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c fmax2.c -o fmax2.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c fmin2.c -o fmin2.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c fprec.c -o fprec.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c fround.c -o fround.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c ftrunc.c -o ftrunc.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c sign.c -o sign.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c fsign.c -o fsign.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c imax2.c -o imax2.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c imin2.c -o imin2.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c chebyshev.c -o chebyshev.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c log1p.c -o log1p.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c expm1.c -o expm1.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c lgammacor.c -o lgammacor.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c gammalims.c -o gammalims.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c stirlerr.c -o stirlerr.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c bd0.c -o bd0.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c gamma.c -o gamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c lgamma.c -o lgamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c gamma_cody.c -o gamma_cody.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c beta.c -o beta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c lbeta.c -o lbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c polygamma.c -o polygamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c bessel_i.c -o bessel_i.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c bessel_j.c -o bessel_j.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c bessel_k.c -o bessel_k.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c bessel_y.c -o bessel_y.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c choose.c -o choose.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c snorm.c -o snorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c sexp.c -o sexp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c dgamma.c -o dgamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c pgamma.c -o pgamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qgamma.c -o qgamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c rgamma.c -o rgamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c dbeta.c -o dbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c pbeta.c -o pbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qbeta.c -o qbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c rbeta.c -o rbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c dunif.c -o dunif.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c punif.c -o punif.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qunif.c -o qunif.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c runif.c -o runif.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c dnorm.c -o dnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c pnorm.c -o pnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qnorm.c -o qnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c rnorm.c -o rnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c dlnorm.c -o dlnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c plnorm.c -o plnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qlnorm.c -o qlnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c rlnorm.c -o rlnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c df.c -o df.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c pf.c -o pf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qf.c -o qf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c rf.c -o rf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c dnf.c -o dnf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c dt.c -o dt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c pt.c -o pt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qt.c -o qt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c rt.c -o rt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c dnt.c -o dnt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c dchisq.c -o dchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c pchisq.c -o pchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qchisq.c -o qchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c rchisq.c -o rchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c rnchisq.c -o rnchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c dbinom.c -o dbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c pbinom.c -o pbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qbinom.c -o qbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c rbinom.c -o rbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c rmultinom.c -o rmultinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c dcauchy.c -o dcauchy.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c pcauchy.c -o pcauchy.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qcauchy.c -o qcauchy.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c rcauchy.c -o rcauchy.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c dexp.c -o dexp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c pexp.c -o pexp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qexp.c -o qexp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c rexp.c -o rexp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c dgeom.c -o dgeom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c pgeom.c -o pgeom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qgeom.c -o qgeom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c rgeom.c -o rgeom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c dhyper.c -o dhyper.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c phyper.c -o phyper.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qhyper.c -o qhyper.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c rhyper.c -o rhyper.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c dnbinom.c -o dnbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c pnbinom.c -o pnbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qnbinom.c -o qnbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c rnbinom.c -o rnbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c dpois.c -o dpois.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c ppois.c -o ppois.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qpois.c -o qpois.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c rpois.c -o rpois.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c dweibull.c -o dweibull.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c pweibull.c -o pweibull.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qweibull.c -o qweibull.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c rweibull.c -o rweibull.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c dlogis.c -o dlogis.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c plogis.c -o plogis.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qlogis.c -o qlogis.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c rlogis.c -o rlogis.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c dnchisq.c -o dnchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c pnchisq.c -o pnchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qnchisq.c -o qnchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c dnbeta.c -o dnbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c pnbeta.c -o pnbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qnbeta.c -o qnbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c pnf.c -o pnf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c pnt.c -o pnt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qnf.c -o qnf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qnt.c -o qnt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c ptukey.c -o ptukey.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c qtukey.c -o qtukey.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c toms708.c -o toms708.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c wilcox.c -o wilcox.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c signrank.c -o signrank.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -O3 -pipe  -g -D_REENTRANT -c std_unif.c -o std_unif.o
ar cr libRmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o std_unif.o
ranlib libRmath.a
make[2]: Leaving directory `/build/buildd/r-base-2.14.1/src/nmath/standalone'
make[1]: Leaving directory `/build/buildd/r-base-2.14.1/src/nmath/standalone'
/usr/bin/make docs R_CMD_BUILD_HELP_OPTS="--txt --example"
make[1]: Entering directory `/build/buildd/r-base-2.14.1'
make[2]: Entering directory `/build/buildd/r-base-2.14.1/m4'
make[2]: Nothing to be done for `R'.
make[2]: Leaving directory `/build/buildd/r-base-2.14.1/m4'
make[2]: Entering directory `/build/buildd/r-base-2.14.1/tools'
make[2]: Nothing to be done for `R'.
make[2]: Leaving directory `/build/buildd/r-base-2.14.1/tools'
make[2]: Entering directory `/build/buildd/r-base-2.14.1/doc'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/doc/html'
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/doc/html'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/doc/manual'
make[3]: Nothing to be done for `R'.
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/doc/manual'
make[2]: Leaving directory `/build/buildd/r-base-2.14.1/doc'
make[2]: Entering directory `/build/buildd/r-base-2.14.1/etc'
make[2]: Leaving directory `/build/buildd/r-base-2.14.1/etc'
make[2]: Entering directory `/build/buildd/r-base-2.14.1/share'
make[2]: Leaving directory `/build/buildd/r-base-2.14.1/share'
make[2]: Entering directory `/build/buildd/r-base-2.14.1/src'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/src/scripts'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/scripts'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/scripts'
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/src/scripts'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/src/include'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/include/R_ext'
make[4]: Nothing to be done for `R'.
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/include/R_ext'
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/src/include'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/src/extra'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/extra/tre'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/extra/tre'
make[5]: `Makedeps' is up to date.
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/extra/tre'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/extra/tre'
make[5]: `libtre.a' is up to date.
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/extra/tre'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/extra/tre'
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/src/extra'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/src/appl'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/appl'
make[4]: `Makedeps' is up to date.
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/appl'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/appl'
make[4]: `libappl.a' is up to date.
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/appl'
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/src/appl'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/src/nmath'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/nmath'
make[4]: `Makedeps' is up to date.
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/nmath'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/nmath'
make[4]: `libnmath.a' is up to date.
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/nmath'
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/src/nmath'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/src/unix'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/unix'
make[4]: `Makedeps' is up to date.
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/unix'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/unix'
make[4]: `libunix.a' is up to date.
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/unix'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -DR_HOME='"/build/buildd/r-base-2.14.1"' -o Rscript \
	  ./Rscript.c
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/unix'
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/src/unix'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/src/main'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/main'
make[4]: `Makedeps' is up to date.
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/main'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/main'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/main'
/build/buildd/r-base-2.14.1/lib/libR.so is unchanged
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/main'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/main'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/main'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/main'
/build/buildd/r-base-2.14.1/bin/exec/R is unchanged
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/main'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/main'
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/src/main'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/src/modules'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/internet'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/internet'
make[5]: `Makedeps' is up to date.
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/internet'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/internet'
make[5]: `internet.so' is up to date.
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/internet'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/internet'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/lapack'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/lapack'
make[5]: `Makedeps' is up to date.
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/lapack'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/lapack'
make[5]: `lapack.so' is up to date.
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/lapack'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/lapack'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/vfonts'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/vfonts'
make[5]: `Makedeps' is up to date.
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/vfonts'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/vfonts'
make[5]: `vfonts.so' is up to date.
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/vfonts'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/vfonts'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/X11'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/X11'
make[5]: `Makedeps' is up to date.
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/X11'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/X11'
make[5]: `R_X11.so' is up to date.
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/X11'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/X11'
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/src/library'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/library/profile'
building system startup profile
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/profile'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/library/base'
building package 'base'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/base'
all.R is unchanged
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/base'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/base'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/library/tools'
building package 'tools'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/tools'
all.R is unchanged
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/tools'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/tools'
make[6]: Entering directory `/build/buildd/r-base-2.14.1/src/library/tools/src'
make[7]: Entering directory `/build/buildd/r-base-2.14.1/src/library/tools/src'
make[7]: `Makedeps' is up to date.
make[7]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/tools/src'
make[7]: Entering directory `/build/buildd/r-base-2.14.1/src/library/tools/src'
../../../../library/tools/libs/tools.so is unchanged
make[7]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/tools/src'
make[6]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/tools/src'
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/tools'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/tools'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/library/compiler'
building package 'compiler'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/compiler'
all.R is unchanged
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/compiler'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/compiler'
make[5]: Nothing to be done for `mklazycomp'.
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/compiler'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/compiler'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/library/base'
make[4]: Nothing to be done for `mklazycomp'.
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/base'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/library/tools'
make[4]: Nothing to be done for `mklazycomp'.
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/tools'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/library/utils'
building package 'utils'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/utils'
all.R is unchanged
make[5]: Nothing to be done for `iconvlist'.
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/utils'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/utils'
make[5]: Nothing to be done for `mklazycomp'.
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/utils'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/utils'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/library/grDevices'
building package 'grDevices'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/grDevices'
all.R is unchanged
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/grDevices'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/grDevices'
make[6]: Entering directory `/build/buildd/r-base-2.14.1/src/library/grDevices/src'
make[7]: Entering directory `/build/buildd/r-base-2.14.1/src/library/grDevices/src'
make[7]: `Makedeps' is up to date.
make[7]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/grDevices/src'
make[7]: Entering directory `/build/buildd/r-base-2.14.1/src/library/grDevices/src'
../../../../library/grDevices/libs/grDevices.so is unchanged
make[8]: Entering directory `/build/buildd/r-base-2.14.1/src/library/grDevices/src/cairo'
make[9]: Entering directory `/build/buildd/r-base-2.14.1/src/library/grDevices/src/cairo'
make[9]: `Makedeps' is up to date.
make[9]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/grDevices/src/cairo'
make[9]: Entering directory `/build/buildd/r-base-2.14.1/src/library/grDevices/src/cairo'
make[10]: Entering directory `/build/buildd/r-base-2.14.1/src/library/grDevices/src/cairo'
make[10]: `cairo.so' is up to date.
make[10]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/grDevices/src/cairo'
make[9]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/grDevices/src/cairo'
make[8]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/grDevices/src/cairo'
make[7]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/grDevices/src'
make[6]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/grDevices/src'
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/grDevices'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/grDevices'
make[5]: Nothing to be done for `mklazycomp'.
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/grDevices'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/grDevices'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/library/graphics'
building package 'graphics'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/graphics'
all.R is unchanged
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/graphics'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/graphics'
make[5]: Nothing to be done for `mklazycomp'.
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/graphics'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/graphics'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/library/stats'
building package 'stats'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/stats'
all.R is unchanged
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/stats'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/stats'
make[6]: Entering directory `/build/buildd/r-base-2.14.1/src/library/stats/src'
make[7]: Entering directory `/build/buildd/r-base-2.14.1/src/library/stats/src'
make[7]: `Makedeps' is up to date.
make[7]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/stats/src'
make[7]: Entering directory `/build/buildd/r-base-2.14.1/src/library/stats/src'
../../../../library/stats/libs/stats.so is unchanged
make[7]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/stats/src'
make[6]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/stats/src'
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/stats'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/stats'
make[5]: Nothing to be done for `mklazycomp'.
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/stats'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/stats'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/library/datasets'
building package 'datasets'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/datasets'
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/datasets'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/datasets'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/library/methods'
building package 'methods'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/methods'
all.R is unchanged
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/methods'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/methods'
make[6]: Entering directory `/build/buildd/r-base-2.14.1/src/library/methods/src'
make[7]: Entering directory `/build/buildd/r-base-2.14.1/src/library/methods/src'
make[7]: `Makedeps' is up to date.
make[7]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/methods/src'
make[7]: Entering directory `/build/buildd/r-base-2.14.1/src/library/methods/src'
../../../../library/methods/libs/methods.so is unchanged
make[7]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/methods/src'
make[6]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/methods/src'
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/methods'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/methods'
make[5]: Nothing to be done for `RfilesLazy'.
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/methods'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/methods'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/library/grid'
building package 'grid'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/grid'
all.R is unchanged
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/grid'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/grid'
make[6]: Entering directory `/build/buildd/r-base-2.14.1/src/library/grid/src'
make[7]: Entering directory `/build/buildd/r-base-2.14.1/src/library/grid/src'
make[7]: `Makedeps' is up to date.
make[7]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/grid/src'
make[7]: Entering directory `/build/buildd/r-base-2.14.1/src/library/grid/src'
../../../../library/grid/libs/grid.so is unchanged
make[7]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/grid/src'
make[6]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/grid/src'
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/grid'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/grid'
make[5]: Nothing to be done for `mklazycomp'.
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/grid'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/grid'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/library/splines'
building package 'splines'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/splines'
all.R is unchanged
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/splines'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/splines'
make[6]: Entering directory `/build/buildd/r-base-2.14.1/src/library/splines/src'
make[7]: Entering directory `/build/buildd/r-base-2.14.1/src/library/splines/src'
make[7]: `Makedeps' is up to date.
make[7]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/splines/src'
make[7]: Entering directory `/build/buildd/r-base-2.14.1/src/library/splines/src'
../../../../library/splines/libs/splines.so is unchanged
make[7]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/splines/src'
make[6]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/splines/src'
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/splines'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/splines'
make[5]: Nothing to be done for `mklazycomp'.
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/splines'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/splines'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/library/stats4'
building package 'stats4'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/stats4'
all.R is unchanged
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/stats4'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/stats4'
make[5]: Nothing to be done for `mklazycomp'.
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/stats4'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/stats4'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/library/tcltk'
building package 'tcltk'
all.R is unchanged
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/tcltk'
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/tcltk'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/tcltk/src'
make[6]: Entering directory `/build/buildd/r-base-2.14.1/src/library/tcltk/src'
make[6]: `Makedeps' is up to date.
make[6]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/tcltk/src'
make[6]: Entering directory `/build/buildd/r-base-2.14.1/src/library/tcltk/src'
../../../../library/tcltk/libs/tcltk.so is unchanged
make[6]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/tcltk/src'
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/tcltk/src'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/tcltk'
make[5]: Nothing to be done for `mklazycomp'.
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/tcltk'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/tcltk'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/library/parallel'
building package 'parallel'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/parallel'
all.R is unchanged
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/parallel'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/parallel'
make[6]: Entering directory `/build/buildd/r-base-2.14.1/src/library/parallel/src'
make[7]: Entering directory `/build/buildd/r-base-2.14.1/src/library/parallel/src'
make[7]: `Makedeps' is up to date.
make[7]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/parallel/src'
make[7]: Entering directory `/build/buildd/r-base-2.14.1/src/library/parallel/src'
../../../../library/parallel/libs/parallel.so is unchanged
make[7]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/parallel/src'
make[6]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/parallel/src'
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/parallel'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/parallel'
make[5]: Nothing to be done for `mklazycomp'.
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/parallel'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/parallel'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/library/base'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/base'
installing parsed NAMESPACE files
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/src/library'
make[2]: Leaving directory `/build/buildd/r-base-2.14.1/src'
make[2]: Entering directory `/build/buildd/r-base-2.14.1/tests'
make[2]: Nothing to be done for `R'.
make[2]: Leaving directory `/build/buildd/r-base-2.14.1/tests'
make[2]: Entering directory `/build/buildd/r-base-2.14.1/po'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/po'
installing translations:
  en
  en_GB
  es
  fr
  de
  it
  ja
  ko
  nn
  pt_BR
  ru
  tr
  zh_CN
  zh_TW
  en@quot
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/po'
make[2]: Leaving directory `/build/buildd/r-base-2.14.1/po'
you should 'make docs' now ...
make[2]: Entering directory `/build/buildd/r-base-2.14.1/doc'
creating NEWS
creating NEWS.pdf
make[3]: Entering directory `/build/buildd/r-base-2.14.1/doc/manual'
creating doc/manual/R-FAQ.html
creating doc/manual/version.texi
creating doc/manual/R-admin.html
creating doc/manual/R-data.html
creating doc/manual/R-exts.html
creating doc/manual/R-intro.html
creating doc/manual/R-ints.html
creating doc/manual/R-lang.html
make[4]: Entering directory `/build/buildd/r-base-2.14.1/doc/html'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/doc/html'
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/doc/manual'
make[2]: Leaving directory `/build/buildd/r-base-2.14.1/doc'
make[2]: Entering directory `/build/buildd/r-base-2.14.1/src/library'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/src/library'
installing parsed Rd
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/library'
  base
  stats
  utils
  methods
  graphics
  grDevices
  datasets
  grid
  tools
  tcltk
  splines
  stats4
  compiler
  parallel
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/library'
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/src/library'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/src/library'
building/updating package metadata ...
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/src/library'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/src/library'
writing package indices
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/library'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/library'
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/src/library'
make[2]: Leaving directory `/build/buildd/r-base-2.14.1/src/library'
make[1]: Leaving directory `/build/buildd/r-base-2.14.1'
touch make-arch-stamp
*** check ***
xvfb-run make check-all
make[1]: Entering directory `/build/buildd/r-base-2.14.1'
make[2]: Entering directory `/build/buildd/r-base-2.14.1/tests'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/tests'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/tests/Examples'
Testing examples for package 'base'
Testing examples for package 'tools'
  comparing 'tools-Ex.Rout' to 'tools-Ex.Rout.save' ...
455c455
< character(0)
---
> [1] "Matrix" "nlme"   "mgcv"  
793c793
< character(0)
---
> [1] "lattice"
802c802
< character(0)
---
> [1] "R (>= 2.14.0)"
Testing examples for package 'utils'
Error: testing 'utils' failed
Execution halted
make[4]: *** [test-Examples-Base] Error 1
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/tests/Examples'
make[3]: *** [test-Examples] Error 2
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/tests'
make[2]: *** [test-all-basics] Error 1
make[2]: Leaving directory `/build/buildd/r-base-2.14.1/tests'
make[1]: *** [check-all] Error 2
make[1]: Leaving directory `/build/buildd/r-base-2.14.1'
make: [check-stamp] Error 2 (ignored)
touch check-stamp
 /usr/bin/fakeroot debian/rules binary
*** make-indep ***
/usr/bin/make docs
make[1]: Entering directory `/build/buildd/r-base-2.14.1'
make[2]: Entering directory `/build/buildd/r-base-2.14.1/m4'
make[2]: Nothing to be done for `R'.
make[2]: Leaving directory `/build/buildd/r-base-2.14.1/m4'
make[2]: Entering directory `/build/buildd/r-base-2.14.1/tools'
make[2]: Nothing to be done for `R'.
make[2]: Leaving directory `/build/buildd/r-base-2.14.1/tools'
make[2]: Entering directory `/build/buildd/r-base-2.14.1/doc'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/doc/html'
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/doc/html'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/doc/manual'
make[3]: Nothing to be done for `R'.
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/doc/manual'
make[2]: Leaving directory `/build/buildd/r-base-2.14.1/doc'
make[2]: Entering directory `/build/buildd/r-base-2.14.1/etc'
make[2]: Leaving directory `/build/buildd/r-base-2.14.1/etc'
make[2]: Entering directory `/build/buildd/r-base-2.14.1/share'
make[2]: Leaving directory `/build/buildd/r-base-2.14.1/share'
make[2]: Entering directory `/build/buildd/r-base-2.14.1/src'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/src/scripts'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/scripts'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/scripts'
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/src/scripts'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/src/include'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/include/R_ext'
make[4]: Nothing to be done for `R'.
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/include/R_ext'
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/src/include'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/src/extra'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/extra/tre'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/extra/tre'
make[5]: `Makedeps' is up to date.
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/extra/tre'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/extra/tre'
make[5]: `libtre.a' is up to date.
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/extra/tre'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/extra/tre'
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/src/extra'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/src/appl'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/appl'
make[4]: `Makedeps' is up to date.
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/appl'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/appl'
make[4]: `libappl.a' is up to date.
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/appl'
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/src/appl'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/src/nmath'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/nmath'
make[4]: `Makedeps' is up to date.
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/nmath'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/nmath'
make[4]: `libnmath.a' is up to date.
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/nmath'
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/src/nmath'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/src/unix'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/unix'
make[4]: `Makedeps' is up to date.
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/unix'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/unix'
make[4]: `libunix.a' is up to date.
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/unix'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -DR_HOME='"/build/buildd/r-base-2.14.1"' -o Rscript \
	  ./Rscript.c
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/unix'
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/src/unix'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/src/main'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/main'
make[4]: `Makedeps' is up to date.
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/main'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/main'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/main'
/build/buildd/r-base-2.14.1/lib/libR.so is unchanged
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/main'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/main'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/main'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/main'
/build/buildd/r-base-2.14.1/bin/exec/R is unchanged
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/main'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/main'
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/src/main'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/src/modules'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/internet'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/internet'
make[5]: `Makedeps' is up to date.
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/internet'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/internet'
make[5]: `internet.so' is up to date.
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/internet'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/internet'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/lapack'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/lapack'
make[5]: `Makedeps' is up to date.
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/lapack'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/lapack'
make[5]: `lapack.so' is up to date.
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/lapack'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/lapack'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/vfonts'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/vfonts'
make[5]: `Makedeps' is up to date.
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/vfonts'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/vfonts'
make[5]: `vfonts.so' is up to date.
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/vfonts'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/vfonts'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/X11'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/X11'
make[5]: `Makedeps' is up to date.
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/X11'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/X11'
make[5]: `R_X11.so' is up to date.
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/X11'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/X11'
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/src/library'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/library/profile'
building system startup profile
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/profile'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/library/base'
building package 'base'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/base'
all.R is unchanged
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/base'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/base'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/library/tools'
building package 'tools'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/tools'
all.R is unchanged
make[5]: Leaving directory `/build/buildd/r-base-2.14.1/src/library/tools'
make[5]: Entering directory `/build/buildd/r-base-2.14.1/src/library/tools'
make[6]: Entering directory `/build/buildd/r-base-2.14.1/src/library/tools/src'
make[7]: Entering directory `/build/buildd/r-base-2.14.1/src/library/tools/src'
make[7]: `Makedeps' is up to date.
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installing translations:
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PDF/LaTeX documentation: reference index ...
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Chapter 1.
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[1]
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[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/fi4/m/n/10 x \T1
/ptm/m/n/10 such that \T1/fi4/m/n/10 1 - x != 1\T1/ptm/m/n/10 .

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\T1/ptm/m/n/10 It equals \T1/fi4/m/n/10 double.base ^ double.neg.ulp.digits \T1
/ptm/m/n/10 if \T1/fi4/m/n/10 double.base

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\T1/ptm/m/n/10 is 2 or \T1/fi4/m/n/10 double.rounding \T1/ptm/m/n/10 is 0; oth-
er-wise, it is \T1/fi4/m/n/10 (double.base ^

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\T1/fi4/m/n/10 double.neg.ulp.digits) / 2\T1/ptm/m/n/10 . Nor-mally \T1/fi4/m/n
/10 1.110223e-16\T1/ptm/m/n/10 . As
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[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/fi4/m/n/
10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/fi4/m/n/10 insertions\T1/ptm/m/n/10 ',
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[]\T1/ptm/m/n/10 If the calls to \T1/fi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec-
tors of dif-fer-ent lengths, \T1/fi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis
t of length
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[]\T1/ptm/m/n/10 a date-time ob-ject, or some-thing which can be co-erced by
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[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
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[66]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
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[]\T1/ptm/m/n/10 A note on `\T1/fi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo
st gen-eral form (from RFC1738) is
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\T1/fi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/f
i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as
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[][][]\T1/fi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c
ord-ing to a group fac-tor; [][]\T1/fi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][
]\T1/fi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/10 table[][][]\T
1/ptm/m/n/10 ,
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[]\T1/fi4/m/n/10 data.frame \T1/ptm/m/n/10 con-verts each of its ar-gu-ments to
 a data frame by call-ing
[109]
Underfull \hbox (badness 4479) in paragraph at lines 6921--6930
[][][]\T1/fi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/10 plot.data.frame
[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 
, [][]\T1/fi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/10 names[]
[][] \T1/ptm/m/n/10 (for the col-umn names),

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[][]\T1/fi4/m/n/10 [.data.frame[][][] \T1/ptm/m/n/10 for sub-set-ting meth-ods,
 [][]\T1/fi4/m/n/10 Math.data.frame[][][] \T1/ptm/m/n/10 etc, about \T1/ptm/m/i
t/10 Group \T1/ptm/m/n/10 meth-ods for
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Underfull \hbox (badness 10000) in paragraph at lines 8834--8838
[][][]$\T1/fi4/m/n/10 http : / / en . wikipedia . org / wiki / IEEE _ 754-[]198
5$[][]\T1/ptm/m/n/10 , [][]$\T1/fi4/m/n/10 http : / / en . wikipedia . org / wi
ki / IEEE _
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Underfull \hbox (badness 2150) in paragraph at lines 9217--9220
[]\T1/ptm/m/n/10 logical in-di-cat-ing if du-pli-ca-tion should be con-sid-ered
 from the re-verse

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[]\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len
t method def-i-ni-tions for
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[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
[183]
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[][][]\T1/fi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo
lic links, [][]\T1/fi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/10 fi
le.access[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/10 list.files[][][]\T1/ptm/m/n/
10 , and
[184]
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[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/fi4/m
/n/10 PATH \T1/ptm/m/n/10 and \T1/fi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with \T1/fi4
/m/n/10 fsep =
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[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/
fi4/m/n/10 file.copy \T1/ptm/m/n/10 and
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[][][]\T1/fi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/10 file.ac
cess[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [
][]\T1/fi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/10 list.files
[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/
fi4/m/n/10 basename[][][]\T1/ptm/m/n/10 ,

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[][][]$\T1/fi4/m/n/10 http : / / en . wikipedia . org / wiki / Hard _ link$[][]
 \T1/ptm/m/n/10 and [][]$\T1/fi4/m/n/10 http : / / en . wikipedia . org / wiki 
/
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[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
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[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
\T1/fi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for
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[][]\T1/fi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t
he DLL has been loaded us-ing
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\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \
T1/fi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/fi4/m/n/10 CallRoutine\T1/ptm/m/n/10
 ,
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[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
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[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][]\T1/fi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see
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[][][]\T1/fi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/10 as.c
omplex[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 ,
 [][]\T1/fi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/10 as.logi
cal[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\
T1/fi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
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[272]
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[]\T1/ptm/m/n/10 By de-fault \T1/fi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an
d \T1/fi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory

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\T1/ptm/m/n/10 `\T1/fi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/fi4/m/n/
10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T
1/fi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/fi4/m/n/10 /library\T1/ptm/m/n/10
 '
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[]\T1/ptm/m/n/10 Normally \T1/fi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi
s-i-bly) the list of at-tached pack-ages, but \T1/fi4/m/n/10 TRUE \T1/ptm/m/n/1
0 or \T1/fi4/m/n/10 FALSE \T1/ptm/m/n/10 if
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[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
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[]\T1/ptm/m/n/10 The al-go-rithm used by \T1/fi4/m/n/10 make.unique \T1/ptm/m/n
/10 has the prop-erty that \T1/fi4/m/n/10 make.unique(c(A, B)) ==
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[][][]$\T1/fi4/m/n/10 http : / / en . wikipedia . org / wiki / Data _ compressi
on$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-sion,
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[]\T1/ptm/m/n/10 The address-space limit is 2Gb un-der 32-bit Win-dows un-less 
the OS's de-fault has been
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[]\T1/fi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s
ages can be sup-pressed sep-a-rately by

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\T1/fi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m
es-sages, so can be sup-pressed by
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[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see

[350]
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[]\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/fi4/m
/n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to

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\T1/ptm/m/n/10 `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/fi4/m/n/10 /bin/pager\T1/pt
m/m/n/10 ', which se-lects a pager via the \T1/fi4/m/n/10 \link{PAGER} \T1/ptm/
m/n/10 en-vi-ron-ment

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[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/fi4/m/n/10 postscr
ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

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[]\T1/ptm/m/n/10 the com-mand used by [][]\T1/fi4/m/n/10 postscript[][][] \T1/p
tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able

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[]\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v
alue \T1/fi4/m/n/10 "
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[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/fi4/m/
n/10 setRepositories[][][]\T1/ptm/m/n/10 ,

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\T1/ptm/m/n/10 e.g. the de-fault `\T1/fi4/m/n/10 "http://www.bioconductor.org"\
T1/ptm/m/n/10 ' or the Eu-ro-pean mir-

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\T1/ptm/m/n/10 ror `\T1/fi4/m/n/10 "http://bioconductor.statistik.tu-dortmund.d
e"\T1/ptm/m/n/10 '. Can be set by

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[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/fi4/m/n/10 create.post[][
][] \T1/ptm/m/n/10 (and hence[][]\T1/fi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10
 and

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[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see

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[]\T1/ptm/m/n/10 default email-ing method used by [][]\T1/fi4/m/n/10 create.pos
t[][][] \T1/ptm/m/n/10 and hence [][]\T1/fi4/m/n/10 bug.report[][][] \T1/ptm/m/
n/10 and
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\T1/ptm/m/n/10 and \T1/fi4/m/n/10 "mac.binary.leopard"\T1/ptm/m/n/10 . Win-dows
 uses \T1/fi4/m/n/10 "win.binary"\T1/ptm/m/n/10 . (\T1/fi4/m/n/10 "mac.binary" 
\T1/ptm/m/n/10 and
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[]\T1/ptm/m/n/10 character string (or \T1/fi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di
-cat-ing [][]\T1/fi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put,
 see
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[383] [384] [385] [386] [387] [388] [389] [390] [391] [392]
Underfull \hbox (badness 1533) in paragraph at lines 25334--25337
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[393] [394] [395] [396] [397] [398] [399] [400] [401] [402] [403] [404]
[405] [406] [407] [408] [409] [410] [411] [412] [413] [414] [415] [416]
[417] [418] [419]
Underfull \hbox (badness 6188) in paragraph at lines 27016--27018
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/fi4/m/n/10 http : / / p
ubs . opengroup . org / onlinepubs / 9699919799 /
[420] [421] [422] [423] [424] [425] [426] [427] [428] [429] [430] [431]
[432] [433] [434] [435] [436] [437]
Underfull \hbox (badness 2142) in paragraph at lines 28174--28178
[]\T1/fi4/m/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my c
ur-rent workspace', i.e., \T1/fi4/m/n/10 save(list =
[438] [439] [440]
Underfull \hbox (badness 2302) in paragraph at lines 28380--28387
[]\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d
e-fined as $[]$,

Underfull \hbox (badness 2837) in paragraph at lines 28380--28387
\T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no
n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non
-missing

Underfull \hbox (badness 4060) in paragraph at lines 28380--28387
\T1/ptm/m/n/10 val-ues. In the case \T1/fi4/m/n/10 center=TRUE\T1/ptm/m/n/10 , 
this is the same as the stan-dard de-vi-a-tion, but

Underfull \hbox (badness 4805) in paragraph at lines 28380--28387
\T1/ptm/m/n/10 in gen-eral it is not. (To scale by the stan-dard de-vi-a-tions 
with-out cen-ter-ing, use
[441] [442]
Underfull \hbox (badness 2261) in paragraph at lines 28533--28538
[]\T1/ptm/m/n/10 If \T1/fi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i
t ap-plies to all fields; oth-er-wise, if
[443]
Underfull \hbox (badness 10000) in paragraph at lines 28560--28566
[]\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac-
ters
[444] [445] [446] [447] [448] [449] [450] [451] [452] [453] [454] [455]
[456] [457] [458] [459] [460] [461] [462] [463] [464] [465] [466] [467]
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Underfull \hbox (badness 1072) in paragraph at lines 31299--31303
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

Underfull \hbox (badness 10000) in paragraph at lines 31304--31308
[]\T1/ptm/m/n/10 The command-line op-tion `\T1/fi4/m/n/10 --vanilla\T1/ptm/m/n/
10 ' im-plies `\T1/fi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/fi4/m/n/10 -
-no-init-file\T1/ptm/m/n/10 ',

Underfull \hbox (badness 10000) in paragraph at lines 31332--31338
\T1/ptm/m/n/10 and `\T1/fi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries, e.g.

Underfull \hbox (badness 3343) in paragraph at lines 31341--31348
\T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment 
vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 31341--31348
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 31341--31348
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/fi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[487] [488] [489] [490]
Underfull \hbox (badness 1142) in paragraph at lines 31617--31623
[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/fi4/m/n/10 form
at \T1/ptm/m/n/10 meth-ods is \T1/fi4/m/n/10 "%Y-%m-%d
[491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501] [502]
[503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514]
[515]
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[]\T1/ptm/m/n/10 Argument \T1/fi4/m/n/10 names \T1/ptm/m/n/10 was in-tro-duced 
in \T1/phv/m/n/10 R \T1/ptm/m/n/10 2.13.0 to avoid need-ing the com-mon use of
[516] [517] [518] [519] [520] [521] [522] [523] [524] [525] [526] [527]
Underfull \hbox (badness 1472) in paragraph at lines 33848--33851
[]\T1/ptm/m/n/10 logical. If \T1/fi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee
p their source in-clud-ing com-ments, see
[528] [529] [530] [531] [532] [533] [534] [535] [536] [537]
Underfull \hbox (badness 1852) in paragraph at lines 34475--34478
[]\T1/ptm/m/n/10 levels to re-move from all fac-tors in \T1/fi4/m/n/10 ...\T1/p
tm/m/n/10 . If set to \T1/fi4/m/n/10 NULL\T1/ptm/m/n/10 , it im-plies
[538] [539] [540] [541] [542] [543]
Underfull \hbox (badness 10000) in paragraph at lines 34855--34858
[][][]\T1/fi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$http : / / developer . r-[]project . org /
[544] [545]
Underfull \hbox (badness 10000) in paragraph at lines 34976--34980
[][][]\T1/fi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/10 getTaskCallbackNames
[][][]\T1/ptm/m/n/10 \ [][]$\T1/fi4/m/n/10 http : / / developer .
[546]
Underfull \hbox (badness 10000) in paragraph at lines 35038--35042
[][][]\T1/fi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/10 taskCallbackManager[
][][]\T1/ptm/m/n/10 \ [][]$\T1/fi4/m/n/10 http : / / developer .
[547] [548] [549] [550] [551] [552] [553] [554] [555] [556] [557] [558]
[559] [560] [561] [562] [563]
Underfull \hbox (badness 1990) in paragraph at lines 36124--36132
[]\T1/fi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e
r-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 36124--36132
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
]\T1/fi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less
[564] [565] [566] [567] [568] [569] [570] [571] [572] [573] [574] [575]
[576] [577] [578] [579]
Underfull \hbox (badness 3668) in paragraph at lines 37174--37176
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[580] [581]
Underfull \hbox (badness 2401) in paragraph at lines 37274--37278
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/fi4/m/n/10 options[][][]("war
n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[582] [583] [584] [585] [586] [587]
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[589] [590] [591] [592]
Underfull \hbox (badness 5417) in paragraph at lines 37959--37963
[]\T1/fi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl
y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[593]
Underfull \hbox (badness 10000) in paragraph at lines 38012--38016
[]\T1/fi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard
' reg-exps, in-clud-ing el-e-ments named
[594]) (./datasets-pkg.tex
Chapter 2.
[595] [596] [597] [598] [599] [600] [601] [602] [603] [604] [605] [606]
Underfull \hbox (badness 10000) in paragraph at lines 691--693
[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[607] [608]
Underfull \hbox (badness 10000) in paragraph at lines 823--825
[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[609] [610] [611] [612] [613]
Underfull \hbox (badness 10000) in paragraph at lines 1128--1130
[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[614] [615] [616] [617] [618] [619] [620] [621] [622]
Underfull \hbox (badness 10000) in paragraph at lines 1699--1701
[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[623] [624] [625] [626] [627] [628] [629] [630]
Underfull \hbox (badness 10000) in paragraph at lines 2120--2122
[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[631] [632] [633] [634] [635] [636] [637] [638]
Underfull \hbox (badness 10000) in paragraph at lines 2582--2584
[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[639] [640] [641] [642] [643] [644]
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Underfull \hbox (badness 10000) in paragraph at lines 3546--3548
[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/m/n/10 c("nfnGroupedData", "nfGr
oupedData", "groupedData",
[655] [656] [657] [658]
Underfull \hbox (badness 1325) in paragraph at lines 3781--3784
[]\T1/ptm/m/n/10 For back-ground on Bristle-cone pines and Methuse-lah Walk, se
e [][]$\T1/fi4/m/n/10 http : / / www . sonic . net /
[659]
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[661] [662] [663]
Underfull \vbox (badness 10000) has occurred while \output is active [664]
Underfull \vbox (badness 10000) has occurred while \output is active [665]
[666] [667] [668] [669] [670] [671] [672]) (./grDevices-pkg.tex
Chapter 3.
[673] [674] [675] [676] [677] [678] [679] [680] [681] [682] [683] [684]
[685] [686] [687] [688]
Underfull \hbox (badness 5175) in paragraph at lines 1009--1011
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
[689] [690] [691] [692] [693] [694] [695] [696] [697] [698] [699] [700]
[701]
Underfull \hbox (badness 1033) in paragraph at lines 1799--1812
\T1/fi4/m/n/10 "pgnm"\T1/ptm/m/n/10 , \T1/fi4/m/n/10 "pgnmraw"\T1/ptm/m/n/10 , 
\T1/fi4/m/n/10 "pnm"\T1/ptm/m/n/10 , \T1/fi4/m/n/10 "pnmraw"\T1/ptm/m/n/10 , \T
1/fi4/m/n/10 "ppm"\T1/ptm/m/n/10 , \T1/fi4/m/n/10 "ppmraw"\T1/ptm/m/n/10 , \T1/
fi4/m/n/10 "pkm"\T1/ptm/m/n/10 , \T1/fi4/m/n/10 "pkmraw"\T1/ptm/m/n/10 , \T1/fi
4/m/n/10 "tiffcrle"\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3758) in paragraph at lines 1799--1812
\T1/fi4/m/n/10 "tiffg3"\T1/ptm/m/n/10 , \T1/fi4/m/n/10 "tiffg32d"\T1/ptm/m/n/10
 , \T1/fi4/m/n/10 "tiffg4"\T1/ptm/m/n/10 , \T1/fi4/m/n/10 "tifflzw"\T1/ptm/m/n/
10 , \T1/fi4/m/n/10 "tiffpack"\T1/ptm/m/n/10 , \T1/fi4/m/n/10 "tiff12nc"\T1/ptm
/m/n/10 , \T1/fi4/m/n/10 "tiff24nc"\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3128) in paragraph at lines 1799--1812
\T1/fi4/m/n/10 "tiff32nc" "psmono"\T1/ptm/m/n/10 , \T1/fi4/m/n/10 "psgray"\T1/p
tm/m/n/10 , \T1/fi4/m/n/10 "psrgb"\T1/ptm/m/n/10 , \T1/fi4/m/n/10 "bit"\T1/ptm/
m/n/10 , \T1/fi4/m/n/10 "bitrgb"\T1/ptm/m/n/10 , \T1/fi4/m/n/10 "bitcmyk"\T1/pt
m/m/n/10 , \T1/fi4/m/n/10 "pngmono"\T1/ptm/m/n/10 ,

Underfull \hbox (badness 1546) in paragraph at lines 1799--1812
\T1/fi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/fi4/m/n/10 "pngalpha"\T1/ptm/m/n/1
0 , \T1/fi4/m/n/10 "png16"\T1/ptm/m/n/10 , \T1/fi4/m/n/10 "png256"\T1/ptm/m/n/1
0 , \T1/fi4/m/n/10 "png16m"\T1/ptm/m/n/10 , \T1/fi4/m/n/10 "png48"\T1/ptm/m/n/1
0 , \T1/fi4/m/n/10 "jpeg"\T1/ptm/m/n/10 , \T1/fi4/m/n/10 "jpeggray"\T1/ptm/m/n/
10 ,
[702]
Underfull \hbox (badness 10000) in paragraph at lines 1908--1910
[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
[703] [704] [705]
Underfull \hbox (badness 6758) in paragraph at lines 2058--2061
[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
[706] [707] [708] [709] [710] [711] [712] [713]
Underfull \hbox (badness 10000) in paragraph at lines 2555--2556

[714] [715] [716] [717] [718] [719] [720] [721] [722] [723] [724] [725]
[726] [727] [728] [729] [730] [731] [732] [733] [734]
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[736]
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[738] [739] [740] [741] [742]
Underfull \hbox (badness 1377) in paragraph at lines 4391--4396
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
[743]
Underfull \hbox (badness 1418) in paragraph at lines 4467--4474
\T1/ptm/m/n/10 it is one of \T1/fi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/fi4
/m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/fi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/
fi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/fi4/m/n/10 "Helvetica-Narrow"\T1/ptm
/m/n/10 ,

Underfull \hbox (badness 1755) in paragraph at lines 4485--4487
[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East 
Asian lan-guages -- see
[744] [745]
Underfull \hbox (badness 7344) in paragraph at lines 4656--4658
[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
[746] [747] [748]
Underfull \hbox (badness 2035) in paragraph at lines 4780--4789
[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

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\T1/ptm/m/n/10 vided: \T1/fi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/fi4/m/n/1
0 "Bookman"\T1/ptm/m/n/10 , \T1/fi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/fi4/m/
n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/fi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1
0 ,

Underfull \hbox (badness 10000) in paragraph at lines 4780--4789
\T1/fi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/fi4/m/n/10 "Palatino"
 \T1/ptm/m/n/10 and \T1/fi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/fi4/m/n/10 "URWG
othic"\T1/ptm/m/n/10 , \T1/fi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 ,
[749]
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\T1/fi4/m/n/10 GB \T1/ptm/m/n/10 can be found at [][]$\T1/fi4/m/n/10 ftp : / / 
ftp . gnu . org / pub / non-[]gnu / chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n
/10 . Ken

Underfull \hbox (badness 3000) in paragraph at lines 4847--4855
\T1/ptm/m/n/10 Lunde's CJKV re-sources are at [][]$\T1/fi4/m/n/10 ftp : / / ftp
 . oreilly . com / pub / examples / nutshell / cjkv /

Underfull \hbox (badness 7344) in paragraph at lines 4866--4868
[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
[750] [751]
Underfull \hbox (badness 1546) in paragraph at lines 4986--4994
[]\T1/ptm/m/n/10 arguments \T1/fi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/fi4/m/n/1
0 family\T1/ptm/m/n/10 , \T1/fi4/m/n/10 title\T1/ptm/m/n/10 , \T1/fi4/m/n/10 fo
nts\T1/ptm/m/n/10 , \T1/fi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/fi4/m/n/10 bg\T
1/ptm/m/n/10 , \T1/fi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/fi4/m/n/10 width\T1/ptm/m/
n/10 ,
[752] [753] [754] [755] [756] [757] [758] [759]
Underfull \hbox (badness 10000) in paragraph at lines 5454--5457
[]\T1/fi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red
/green/blue) into HSV space
[760] [761] [762] [763] [764] [765]
Underfull \hbox (badness 1189) in paragraph at lines 5850--5852
[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
[766] [767] [768] [769] [770] [771]
Underfull \hbox (badness 3780) in paragraph at lines 6239--6245
[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/fi4/m/n/1
0 "AvantGarde"\T1/ptm/m/n/10 ,
[772] [773] [774]
Underfull \hbox (badness 2680) in paragraph at lines 6434--6436
[]\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/fi4/m/n/10 n
umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of
[775] [776] [777]) (./graphics-pkg.tex [778]
Chapter 4.
[779] [780] [781] [782] [783] [784] [785] [786] [787] [788] [789]
Underfull \hbox (badness 10000) in paragraph at lines 687--694
[]\T1/fi4/m/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/p
tm/m/n/10 in-ter-face to the C func-tion \T1/fi4/m/n/10 CreateAtVector() \T1/pt
m/m/n/10 in
[790] [791] [792] [793] [794] [795] [796] [797] [798] [799]
Underfull \hbox (badness 4634) in paragraph at lines 1250--1253
[][][]\T1/fi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works 
nowa-days with data.frames; [][]\T1/fi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n
/10 ,
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[]\T1/ptm/m/n/10 The main ti-tle (on top) us-ing font and size (char-ac-ter ex-
pan-sion)

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(./grid-pkg.tex
Chapter 5.

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[]\T1/ptm/m/n/10 Note that \T1/fi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1
/fi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio
n of
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[][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/fi4/m/n/10 pushViewport[][][]\T1/ptm/m
/n/10 , [][]\T1/fi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/10
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m/m/n/10 , [][]\T1/fi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/
10 unit[][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 Both func-tions cre-ate an ar-rows grob (a graph-i-cal ob-ject
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set-ting of
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
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[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
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Chapter 6.
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[]\T1/ptm/m/n/10 The class \T1/fi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \
T1/fi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/fi4/m/n/10 "package
"\T1/ptm/m/n/10 , also of class
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[]\T1/ptm/m/n/10 The ar-gu-ment to \T1/fi4/m/n/10 insertSource \T1/ptm/m/n/10 c
an be an ob-ject of class

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[]\T1/ptm/m/n/10 As you might ex-pect [][]\T1/fi4/m/n/10 setGeneric[][][] \T1/p
tm/m/n/10 and [][]\T1/fi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o
b-jects of class
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\T1/ptm/m/n/10 In ad-di-tion, \T1/fi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo
ves the func-tion it-self; \T1/fi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store
s the
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[]\T1/ptm/m/n/10 The
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[]\T1/ptm/m/n/10 class [][]\T1/fi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for 
the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar

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\T1/fi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T
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[]\T1/ptm/m/n/10 Object of class \T1/fi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10
 the method to use in re-sponse to a
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[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
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[]\T1/ptm/m/n/10 Two op-tional method names are in-ter-preted spe-cially, \T1/f
i4/m/n/10 initialize \T1/ptm/m/n/10 and
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[]\T1/ptm/m/n/10 The de-fault method for \T1/fi4/m/n/10 $initialize() \T1/ptm/m
/n/10 is equiv-a-lent to in-vok-ing the method
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[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
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[]\T1/ptm/m/n/10 for \T1/fi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, 
a [][]\T1/fi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal
ly
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[]\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance 
in R [][]$\T1/fi4/m/n/10 http : / / stat . stanford . edu / ~jmc4 /

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[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1156] [1157] [1158] [1159]) (./splines-pkg.tex [1160]
Chapter 7.

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[]\T1/ptm/m/n/10 Douglas M. Bates \T1/fi4/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
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[1172] [1173] [1174]) (./stats-pkg.tex
Chapter 8.
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[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/fi4/m/n/10 lm 
\T1/ptm/m/n/10 or \T1/fi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/fi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
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[]\T1/ptm/m/n/10 Objects of class \T1/fi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be
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[]\T1/fi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra
m \T1/fi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also
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[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T
1/fi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the
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[]\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/fi4/m/n/10 ht
tp : / / cran . r-[]project . org / web / views /
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[]\T1/ptm/m/n/10 Either \T1/fi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/fi4/
m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
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[]\T1/ptm/m/n/10 the char-ac-ter string \T1/fi4/m/n/10 "Fligner-Killeen test of
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@

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[]\T1/ptm/m/n/10 When \T1/fi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][
]\T1/fi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it-
er-a-tion. Hence,
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[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
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[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to
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[]\T1/ptm/m/n/10 The func-tion \T1/fi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main
ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
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-ercible by
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/fi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
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[]\T1/fi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/fi4/m/n/10 model.response 
\T1/ptm/m/n/10 are equiv-a-lent to \T1/fi4/m/n/10 model.extract(, "offset") \T1
/ptm/m/n/10 and
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[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

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[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

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\T1/ptm/m/n/10 value by a fac-tor of \T1/fi4/m/n/10 reltol * (abs(val) + reltol
) \T1/ptm/m/n/10 at a step. De-faults to

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[]\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/fi4/m/n/10 "BFGS"\T1/pt
m/m/n/10 , \T1/fi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/fi4/m/n/10 "SANN" \
T1/ptm/m/n/10 meth-ods if
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
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[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/fi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/fi4/m/n/10 predict.ar[][
][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][]
\T1/fi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 Utility func-tion to be used in higher-level [][]\T1/fi4/m/n/1
0 print[][][] \T1/ptm/m/n/10 meth-ods, such as [][]\T1/fi4/m/n/10 print.summary
.lm[][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
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[1579] [1580] [1581] [1582] [1583] [1584]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/fi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
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[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/f
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
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[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/f
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1607] [1608] [1609] [1610] [1611] [1612]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1613] [1614] [1615] [1616]
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[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
[1617]
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[]\T1/ptm/m/n/10 For the \T1/fi4/m/n/10 partial.resid=TRUE \T1/ptm/m/n/10 op-ti
on it must have a [][]\T1/fi4/m/n/10 residuals[][][] \T1/ptm/m/n/10 method that
 ac-cepts
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1647] [1648] [1649] [1650] [1651] [1652] [1653]
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[]\T1/ptm/m/n/10 There is a \T1/fi4/m/n/10 summary \T1/ptm/m/n/10 method for co
n-tin-gency ta-ble ob-jects cre-ated by \T1/fi4/m/n/10 table \T1/ptm/m/n/10 or 
\T1/fi4/m/n/10 xtabs(*,

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[]\T1/ptm/m/n/10 By de-fault, when \T1/fi4/m/n/10 sparse=FALSE\T1/ptm/m/n/10 , 
a con-tin-gency ta-ble in ar-ray rep-re-sen-ta-tion of S3 class
[1654] [1655] [1656]) (./stats4-pkg.tex
Chapter 9.
[1657] [1658] [1659] [1660] [1661] [1662]pdfTeX warning (ext4): destination wit
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l.407 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                   [1663] [1664] [1665]
[1666]) (./tcltk-pkg.tex
Chapter 10.
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[]\T1/fi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing
 any Tk or Tcl com-mand by sim-ply run-ning
[1676] [1677] [1678] [1679]
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[1681] [1682] [1683] [1684] [1685] [1686] [1687]) (./tools-pkg.tex [1688]
Chapter 11.

LaTeX Font Warning: Font shape `T1/fi4/m/it' undefined
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[1689]
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\T1/fi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/fi4/m/n/10 formatInProcee
dings\T1/ptm/m/n/10 , \T1/fi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/fi4/m/n/1
0 formatMastersthesis\T1/ptm/m/n/10 ,

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\T1/fi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/fi4/m/n/10 formatPhdthesis\T1/ptm
/m/n/10 , \T1/fi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/fi4/m/n/10 forma
tTechreport \T1/ptm/m/n/10 and
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\T1/ptm/m/n/10 ac-ters. It is sorted by Uni-code point and within a point al-ph
a-bet-i-cally on the glyph

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\T1/ptm/m/n/10 (there can be more than one name for a Uni-code point). The data
 are in the file
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or \T1/fi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see
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[]\T1/ptm/m/n/10 If \T1/fi4/m/n/10 reduce \T1/ptm/m/n/10 is \T1/fi4/m/n/10 TRUE
\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/fi4/m/n/10 De
pendsList \T1/ptm/m/n/10 ob-ject

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\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
[1710] [1711] [1712] [1713] [1714] [1715] [1716]

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[]\T1/fi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t
or of links, as re-turned by
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[]\T1/ptm/m/n/10 If \T1/fi4/m/sl/10 reduce \T1/ptm/m/n/10 is \T1/fi4/m/sl/10 TR
UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/fi4/m/sl/10
 DependsList \T1/ptm/m/n/10 ob-ject

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\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to be used in the `\T
1/fi4/m/sl/10 PACKAGES\T1/ptm/m/n/10 ' and
[1740] [1741] [1742] [1743]) (./utils-pkg.tex [1744]
Chapter 12.
[1745]
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/fi4/m/sl/10 insertions\T1/ptm/m/n/10 ',
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/fi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/fi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
[1764] [1765] [1766] [1767]
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[]\T1/ptm/m/n/10 None for \T1/fi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th
is func-tion is in-voked for its side ef-fect of up-dat-ing
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[]\T1/ptm/m/n/10 a [][]\T1/fi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/fi4
/m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/fi4/m/sl/10 simplify \T1/ptm/m
/n/10 ar-gu-ment above. In the lat-ter case, the iden-tity
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[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the \T1/fi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the

Underfull \hbox (badness 2837) in paragraph at lines 2631--2637
\T1/fi4/m/sl/10 internet.info \T1/ptm/m/n/10 op-tion. The de-tails de-pend on t
he plat-form and scheme, but set-ting
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[]\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers 
via en-vi-ron-ment vari-able
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mat}) has been already used, duplicate ignored
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l.3430 ...mat Unordered and Ordered Lists}{format}
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                                                   [1799] [1800] [1801]
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/fi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/fi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
[1810]
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[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

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\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file
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[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,
[1814] [1815]
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[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
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[]\T1/ptm/m/n/10 (not used on Win-dows) anal-o-gous to \T1/fi4/m/sl/10 configur
e.args \T1/ptm/m/n/10 for flag
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[][][]\T1/fi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/sl/10
 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/sl/10 download.packages
[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/
10 ,
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[]\T1/ptm/m/n/10 If a `\T1/fi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,
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[]\T1/ptm/m/n/10 the to-ken that was (or, is to be) com-pleted, as set by the l
ast call to
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[]\T1/ptm/m/n/10 The name \T1/fi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b
e used on Win-dows, in which case
[1857] [1858]
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[][][]\T1/fi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/fi4/m/sl/10 read.t
able[][][]\T1/ptm/m/n/10 ;
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[][][]\T1/fi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/fi4/m/sl/10 write.
table[][][]\T1/ptm/m/n/10 ;
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[][][]$\T1/fi4/m/sl/10 http : / / en . wikipedia . org / wiki / Ctags$[][]\T1/p
tm/m/n/10 , [][]$\T1/fi4/m/sl/10 http : / / www . gnu . org / software / emacs 
/
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[]\T1/ptm/m/n/10 The de-fault for \T1/fi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n
ow taken from the en-vi-ron-ment vari-able
[1885]
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[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a
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[66]
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[][][]$\T1/fi4/bx/n/10 http : / / en . wikipedia . org / wiki / IEEE _ 754-[]19
85$[][]\T1/ptm/m/n/10 , [][]$\T1/fi4/bx/n/10 http : / / en . wikipedia . org / 
wiki / IEEE _
[139] [140] [141] [142] [143] [144]
Underfull \hbox (badness 2150) in paragraph at lines 9217--9220
[]\T1/ptm/m/n/10 logical in-di-cat-ing if du-pli-ca-tion should be con-sid-ered
 from the re-verse

Underfull \hbox (badness 6396) in paragraph at lines 9230--9238
[]\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len
t method def-i-ni-tions for
[145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156]
[157] [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168]
[169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180]
[181] [182]
Underfull \hbox (badness 2253) in paragraph at lines 11756--11758
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
[183]
Underfull \hbox (badness 1565) in paragraph at lines 11816--11820
[][][]\T1/fi4/bx/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-b
olic links, [][]\T1/fi4/bx/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10
 file.access[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 list.files[][][]\T1/ptm/
m/n/10 , and
[184]
Underfull \hbox (badness 3189) in paragraph at lines 11859--11861
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/fi4/b
x/n/10 PATH \T1/ptm/m/n/10 and \T1/fi4/bx/n/10 R_LIBS \T1/ptm/m/n/10 with \T1/f
i4/bx/n/10 fsep =
[185] [186]
Underfull \hbox (badness 1466) in paragraph at lines 11990--11993
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/
fi4/bx/n/10 file.copy \T1/ptm/m/n/10 and
[187]
Underfull \hbox (badness 10000) in paragraph at lines 12077--12081
[][][]\T1/fi4/bx/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 file.
access[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 file.path[][][]\T1/ptm/m/n/10 
, [][]\T1/fi4/bx/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 list.
files[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 unlink[][][]\T1/ptm/m/n/10 , []
[]\T1/fi4/bx/n/10 basename[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 12088--12091
[][][]$\T1/fi4/bx/n/10 http : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/fi4/bx/n/10 http : / / en . wikipedia . org / wik
i /
[188] [189] [190] [191]
Underfull \hbox (badness 3965) in paragraph at lines 12328--12332
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
[192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202]
Underfull \hbox (badness 4429) in paragraph at lines 13053--13056
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
\T1/fi4/bx/n/10 complex[][][] \T1/ptm/m/n/10 only for
[203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214]
[215] [216]
Underfull \hbox (badness 1092) in paragraph at lines 13891--13896
[][]\T1/fi4/bx/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter 
the DLL has been loaded us-ing
[217] [218] [219]
Underfull \hbox (badness 6741) in paragraph at lines 14137--14141
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \
T1/fi4/bx/n/10 CRoutine\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 CallRoutine\T1/ptm/m/n/
10 ,
[220] [221] [222] [223] [224] [225] [226] [227] [228]
Underfull \vbox (badness 10000) has occurred while \output is active [229]
[230] [231] [232] [233] [234] [235] [236] [237]
Underfull \hbox (badness 1478) in paragraph at lines 15285--15288
[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
[238] [239] [240] [241] [242] [243] [244] [245] [246] [247]
Underfull \hbox (badness 1442) in paragraph at lines 15952--15954
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][]\T1/fi4/bx/n/10 dev.new[][][]\T1/ptm/m/n/10 : see
[248]
Underfull \hbox (badness 2452) in paragraph at lines 16044--16060
[][][]\T1/fi4/bx/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 as
.complex[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 as.double[][][]\T1/ptm/m/n/1
0 , [][]\T1/fi4/bx/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 as
.logical[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 as.raw[][][]\T1/ptm/m/n/10 ,
 [][]\T1/fi4/bx/n/10 as.vector[][][]\T1/ptm/m/n/10 ,
[249] [250] [251] [252] [253] [254] [255] [256] [257] [258] [259]
Underfull \hbox (badness 4739) in paragraph at lines 16680--16682
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
[260] [261] [262] [263] [264] [265] [266] [267] [268] [269] [270] [271]
[272]
Underfull \hbox (badness 10000) in paragraph at lines 17526--17530
[]\T1/ptm/m/n/10 By de-fault \T1/fi4/bx/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, a
nd \T1/fi4/bx/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory

Underfull \hbox (badness 2460) in paragraph at lines 17526--17530
\T1/ptm/m/n/10 `\T1/fi4/bx/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/fi4/bx/
n/10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `
\T1/fi4/bx/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/fi4/bx/n/10 /library\T1/ptm/m/
n/10 '
[273] [274] [275]
Underfull \hbox (badness 1014) in paragraph at lines 17692--17697
[]\T1/ptm/m/n/10 Normally \T1/fi4/bx/n/10 library \T1/ptm/m/n/10 re-turns (in-v
is-i-bly) the list of at-tached pack-ages, but \T1/fi4/bx/n/10 TRUE \T1/ptm/m/n
/10 or \T1/fi4/bx/n/10 FALSE \T1/ptm/m/n/10 if
[276] [277] [278] [279] [280] [281] [282] [283] [284] [285] [286]
Underfull \hbox (badness 1264) in paragraph at lines 18388--18393
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
[287] [288] [289] [290] [291] [292] [293] [294] [295] [296]
Underfull \hbox (badness 1484) in paragraph at lines 19045--19047
[]\T1/ptm/m/n/10 The al-go-rithm used by \T1/fi4/bx/n/10 make.unique \T1/ptm/m/
n/10 has the prop-erty that \T1/fi4/bx/n/10 make.unique(c(A, B)) ==
[297] [298] [299] [300] [301] [302] [303] [304] [305] [306] [307] [308]
[309] [310] [311] [312]
Underfull \hbox (badness 1655) in paragraph at lines 20023--20029
[][][]$\T1/fi4/bx/n/10 http : / / en . wikipedia . org / wiki / Data _ compress
ion$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-sion,
[313] [314] [315]
Underfull \hbox (badness 1484) in paragraph at lines 20196--20204
[]\T1/ptm/m/n/10 The address-space limit is 2Gb un-der 32-bit Win-dows un-less 
the OS's de-fault has been
[316] [317] [318]
Underfull \hbox (badness 2790) in paragraph at lines 20446--20449
[]\T1/fi4/bx/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-
sages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 20446--20449
\T1/fi4/bx/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still 
mes-sages, so can be sup-pressed by
[319] [320] [321] [322] [323] [324] [325] [326] [327] [328] [329] [330]
[331] [332] [333] [334] [335] [336] [337] [338] [339] [340] [341] [342]
[343] [344] [345] [346] [347] [348] [349]
Underfull \hbox (badness 6220) in paragraph at lines 22449--22451
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see

[350]
Underfull \hbox (badness 10000) in paragraph at lines 22511--22520
[]\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/fi4/b
x/n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to

Underfull \hbox (badness 3525) in paragraph at lines 22511--22520
\T1/ptm/m/n/10 `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/fi4/bx/n/10 /bin/pager\T1/p
tm/m/n/10 ', which se-lects a pager via the \T1/fi4/bx/n/10 \link{PAGER} \T1/pt
m/m/n/10 en-vi-ron-ment

Underfull \hbox (badness 2142) in paragraph at lines 22521--22527
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/fi4/bx/n/10 postsc
ript[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 1968) in paragraph at lines 22534--22539
[]\T1/ptm/m/n/10 the com-mand used by [][]\T1/fi4/bx/n/10 postscript[][][] \T1/
ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 10000) in paragraph at lines 22544--22553
[]\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v
alue \T1/fi4/bx/n/10 "
[351] [352] [353]
Underfull \hbox (badness 10000) in paragraph at lines 22769--22775
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/fi4/bx
/n/10 setRepositories[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 22769--22775
\T1/ptm/m/n/10 e.g. the de-fault `\T1/fi4/bx/n/10 "http://www.bioconductor.org"
\T1/ptm/m/n/10 ' or the Eu-ro-pean mir-

Underfull \hbox (badness 10000) in paragraph at lines 22769--22775
\T1/ptm/m/n/10 ror `\T1/fi4/bx/n/10 "http://bioconductor.statistik.tu-dortmund.
de"\T1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 10000) in paragraph at lines 22781--22784
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/fi4/bx/n/10 create.post[]
[][] \T1/ptm/m/n/10 (and hence[][]\T1/fi4/bx/n/10 bug.report[][][] \T1/ptm/m/n/
10 and

Underfull \hbox (badness 2689) in paragraph at lines 22802--22804
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see

Underfull \hbox (badness 7203) in paragraph at lines 22830--22833
[]\T1/ptm/m/n/10 default email-ing method used by [][]\T1/fi4/bx/n/10 create.po
st[][][] \T1/ptm/m/n/10 and hence [][]\T1/fi4/bx/n/10 bug.report[][][] \T1/ptm/
m/n/10 and
[354]
Underfull \hbox (badness 2680) in paragraph at lines 22840--22846
\T1/ptm/m/n/10 and \T1/fi4/bx/n/10 "mac.binary.leopard"\T1/ptm/m/n/10 . Win-dow
s uses \T1/fi4/bx/n/10 "win.binary"\T1/ptm/m/n/10 . (\T1/fi4/bx/n/10 "mac.binar
y" \T1/ptm/m/n/10 and
[355] [356] [357] [358] [359] [360] [361] [362] [363] [364] [365] [366]
[367] [368] [369] [370]
Underfull \hbox (badness 2726) in paragraph at lines 23883--23886
[]\T1/ptm/m/n/10 character string (or \T1/fi4/bx/n/10 NULL\T1/ptm/m/n/10 ) in-d
i-cat-ing [][]\T1/fi4/bx/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-pu
t, see
[371] [372] [373] [374] [375] [376] [377] [378] [379] [380] [381] [382]
[383] [384] [385] [386] [387] [388] [389] [390] [391] [392]
Underfull \hbox (badness 1533) in paragraph at lines 25334--25337
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[393] [394] [395] [396] [397] [398] [399] [400] [401] [402] [403] [404]
[405] [406] [407] [408] [409] [410] [411] [412] [413] [414] [415] [416]
[417] [418] [419]
Underfull \hbox (badness 6188) in paragraph at lines 27016--27018
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/fi4/bx/n/10 http : / / 
pubs . opengroup . org / onlinepubs / 9699919799 /
[420] [421] [422] [423] [424] [425] [426] [427] [428] [429] [430] [431]
[432] [433] [434] [435] [436] [437]
Underfull \hbox (badness 2142) in paragraph at lines 28174--28178
[]\T1/fi4/bx/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my 
cur-rent workspace', i.e., \T1/fi4/bx/n/10 save(list =
[438] [439] [440]
Underfull \hbox (badness 2302) in paragraph at lines 28380--28387
[]\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d
e-fined as $[]$,

Underfull \hbox (badness 2837) in paragraph at lines 28380--28387
\T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no
n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non
-missing

Underfull \hbox (badness 4060) in paragraph at lines 28380--28387
\T1/ptm/m/n/10 val-ues. In the case \T1/fi4/bx/n/10 center=TRUE\T1/ptm/m/n/10 ,
 this is the same as the stan-dard de-vi-a-tion, but

Underfull \hbox (badness 4805) in paragraph at lines 28380--28387
\T1/ptm/m/n/10 in gen-eral it is not. (To scale by the stan-dard de-vi-a-tions 
with-out cen-ter-ing, use
[441] [442]
Underfull \hbox (badness 2261) in paragraph at lines 28533--28538
[]\T1/ptm/m/n/10 If \T1/fi4/bx/n/10 strip.white \T1/ptm/m/n/10 is of length 1, 
it ap-plies to all fields; oth-er-wise, if
[443]
Underfull \hbox (badness 10000) in paragraph at lines 28560--28566
[]\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac-
ters
[444] [445] [446] [447] [448] [449] [450] [451] [452] [453] [454] [455]
[456] [457] [458] [459] [460] [461] [462] [463] [464] [465] [466] [467]
[468] [469] [470] [471] [472] [473] [474]
Underfull \vbox (badness 3803) has occurred while \output is active [475]
[476] [477] [478] [479] [480]
Underfull \vbox (badness 10000) has occurred while \output is active [481]
[482] [483] [484] [485] [486]
Underfull \hbox (badness 1072) in paragraph at lines 31299--31303
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

Underfull \hbox (badness 10000) in paragraph at lines 31304--31308
[]\T1/ptm/m/n/10 The command-line op-tion `\T1/fi4/bx/n/10 --vanilla\T1/ptm/m/n
/10 ' im-plies `\T1/fi4/bx/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/fi4/bx/n/1
0 --no-init-file\T1/ptm/m/n/10 ',

Underfull \hbox (badness 10000) in paragraph at lines 31332--31338
\T1/ptm/m/n/10 and `\T1/fi4/bx/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked fo
r first in architecture-specific di-rec-to-ries, e.g.

Underfull \hbox (badness 3343) in paragraph at lines 31341--31348
\T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment 
vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 31341--31348
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 31341--31348
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/fi4/bx
/n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[487] [488] [489] [490]
Underfull \hbox (badness 1142) in paragraph at lines 31617--31623
[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/fi4/bx/n/10 for
mat \T1/ptm/m/n/10 meth-ods is \T1/fi4/bx/n/10 "%Y-%m-%d
[491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501] [502]
[503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514]
[515]
Underfull \hbox (badness 4416) in paragraph at lines 33160--33162
[]\T1/ptm/m/n/10 Argument \T1/fi4/bx/n/10 names \T1/ptm/m/n/10 was in-tro-duced
 in \T1/phv/m/n/10 R \T1/ptm/m/n/10 2.13.0 to avoid need-ing the com-mon use of

[516] [517] [518] [519] [520] [521] [522] [523] [524] [525] [526] [527]
Underfull \hbox (badness 1472) in paragraph at lines 33848--33851
[]\T1/ptm/m/n/10 logical. If \T1/fi4/bx/n/10 TRUE\T1/ptm/m/n/10 , func-tions ke
ep their source in-clud-ing com-ments, see
[528] [529] [530] [531] [532] [533] [534] [535] [536] [537]
Underfull \hbox (badness 1852) in paragraph at lines 34475--34478
[]\T1/ptm/m/n/10 levels to re-move from all fac-tors in \T1/fi4/bx/n/10 ...\T1/
ptm/m/n/10 . If set to \T1/fi4/bx/n/10 NULL\T1/ptm/m/n/10 , it im-plies
[538] [539] [540] [541] [542] [543]
Underfull \hbox (badness 10000) in paragraph at lines 34855--34858
[][][]\T1/fi4/bx/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] 
[][]$http : / / developer . r-[]project . org /
[544] [545]
Underfull \hbox (badness 10000) in paragraph at lines 34976--34980
[][][]\T1/fi4/bx/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10
 removeTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 getTaskCallbackNa
mes[][][]\T1/ptm/m/n/10 \ [][]$\T1/fi4/bx/n/10 http : / / developer .
[546]
Underfull \hbox (badness 10000) in paragraph at lines 35038--35042
[][][]\T1/fi4/bx/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10
 removeTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 taskCallbackManag
er[][][]\T1/ptm/m/n/10 \ [][]$\T1/fi4/bx/n/10 http : / / developer .
[547] [548] [549] [550] [551] [552] [553] [554] [555] [556] [557] [558]
[559] [560] [561] [562] [563]
Underfull \hbox (badness 1990) in paragraph at lines 36124--36132
[]\T1/fi4/bx/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any 
er-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 36124--36132
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
]\T1/fi4/bx/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less
[564] [565] [566] [567] [568] [569] [570] [571] [572] [573] [574] [575]
[576] [577] [578] [579]
Underfull \hbox (badness 3668) in paragraph at lines 37174--37176
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[580] [581]
Underfull \hbox (badness 2401) in paragraph at lines 37274--37278
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/fi4/bx/n/10 options[][][]("wa
rn") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[582] [583] [584] [585] [586] [587]
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[]\T1/fi4/bx/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rent
ly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
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[]\T1/fi4/bx/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dar
d' reg-exps, in-clud-ing el-e-ments named
[594]) (./datasets-pkg.tex
Chapter 2.
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[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/bx/n/10 c("nfnGroupedData", "nfG
roupedData", "groupedData",
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[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/bx/n/10 c("nfnGroupedData", "nfG
roupedData", "groupedData",
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[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/bx/n/10 c("nfnGroupedData", "nfG
roupedData", "groupedData",
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[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/bx/n/10 c("nfnGroupedData", "nfG
roupedData", "groupedData",
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[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/bx/n/10 c("nfnGroupedData", "nfG
roupedData", "groupedData",
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[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/bx/n/10 c("nfnGroupedData", "nfG
roupedData", "groupedData",
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[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/bx/n/10 c("nfnGroupedData", "nfG
roupedData", "groupedData",
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[]\T1/ptm/m/n/10 For back-ground on Bristle-cone pines and Methuse-lah Walk, se
e [][]$\T1/fi4/bx/n/10 http : / / www . sonic . net /
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[666] [667] [668] [669] [670] [671] [672]) (./grDevices-pkg.tex
Chapter 3.
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[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
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\T1/fi4/bx/n/10 "pgnm"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "pgnmraw"\T1/ptm/m/n/10 
, \T1/fi4/bx/n/10 "pnm"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "pnmraw"\T1/ptm/m/n/10 
, \T1/fi4/bx/n/10 "ppm"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "ppmraw"\T1/ptm/m/n/10 
, \T1/fi4/bx/n/10 "pkm"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "pkmraw"\T1/ptm/m/n/10 
, \T1/fi4/bx/n/10 "tiffcrle"\T1/ptm/m/n/10 ,

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10 , \T1/fi4/bx/n/10 "tiffg4"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "tifflzw"\T1/ptm/
m/n/10 , \T1/fi4/bx/n/10 "tiffpack"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "tiff12nc"\
T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "tiff24nc"\T1/ptm/m/n/10 ,

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/ptm/m/n/10 , \T1/fi4/bx/n/10 "psrgb"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "bit"\T1/
ptm/m/n/10 , \T1/fi4/bx/n/10 "bitrgb"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "bitcmyk"
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/10 , \T1/fi4/bx/n/10 "png16"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "png256"\T1/ptm/m
/n/10 , \T1/fi4/bx/n/10 "png16m"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "png48"\T1/ptm
/m/n/10 , \T1/fi4/bx/n/10 "jpeg"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "jpeggray"\T1/
ptm/m/n/10 ,
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set-ting of
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[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
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[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
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\T1/ptm/m/n/10 it is one of \T1/fi4/bx/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/fi
4/bx/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "Courier"\T1/ptm/m/n/10 , \
T1/fi4/bx/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "Helvetica-Narrow"\T
1/ptm/m/n/10 ,

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[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East 
Asian lan-guages -- see
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[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
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[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

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\T1/ptm/m/n/10 vided: \T1/fi4/bx/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/fi4/bx/n
/10 "Bookman"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "Courier"\T1/ptm/m/n/10 , \T1/fi4
/bx/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "Helvetica-Narrow"\T1/ptm/
m/n/10 ,

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o" \T1/ptm/m/n/10 and \T1/fi4/bx/n/10 "Times"\T1/ptm/m/n/10 ; \T1/fi4/bx/n/10 "
URWGothic"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "URWBookman"\T1/ptm/m/n/10 ,
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\T1/fi4/bx/n/10 GB \T1/ptm/m/n/10 can be found at [][]$\T1/fi4/bx/n/10 ftp : / 
/ ftp . gnu . org / pub / non-[]gnu / chinese-[]fonts-[]truetype/$[][]\T1/ptm/m
/n/10 . Ken

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\T1/ptm/m/n/10 Lunde's CJKV re-sources are at [][]$\T1/fi4/bx/n/10 ftp : / / ft
p . oreilly . com / pub / examples / nutshell / cjkv /

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[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
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[]\T1/ptm/m/n/10 arguments \T1/fi4/bx/n/10 onefile\T1/ptm/m/n/10 , \T1/fi4/bx/n
/10 family\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 title\T1/ptm/m/n/10 , \T1/fi4/bx/n/1
0 fonts\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 encoding\T1/ptm/m/n/10 , \T1/fi4/bx/n/1
0 bg\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 fg\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 width\T
1/ptm/m/n/10 ,
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[]\T1/fi4/bx/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (re
d/green/blue) into HSV space
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[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
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[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/fi4/bx/n/
10 "AvantGarde"\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/fi4/bx/n/10 
number[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of
[775] [776] [777]) (./graphics-pkg.tex [778]
Chapter 4.
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[]\T1/fi4/bx/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/
ptm/m/n/10 in-ter-face to the C func-tion \T1/fi4/bx/n/10 CreateAtVector() \T1/
ptm/m/n/10 in
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[][][]\T1/fi4/bx/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works
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/n/10 ,
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[]\T1/ptm/m/n/10 The main ti-tle (on top) us-ing font and size (char-ac-ter ex-
pan-sion)

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[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font and size \T1/fi4/bx/n/10 pa
r("font.sub") \T1/ptm/m/n/10 and color
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(./grid-pkg.tex
Chapter 5.

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[]\T1/ptm/m/n/10 Note that \T1/fi4/bx/n/10 preDrawDetails \T1/ptm/m/n/10 and \T
1/fi4/bx/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-t
ion of
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[][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/fi4/bx/n/10 pushViewport[][][]\T1/ptm/
m/n/10 , [][]\T1/fi4/bx/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n
/10 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 seekViewport[][][]\T
1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/fi4
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[]\T1/ptm/m/n/10 Both func-tions cre-ate an ar-rows grob (a graph-i-cal ob-ject
 de-scrib-ing ar-rows), but only
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
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[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
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[1023] [1024]) (./methods-pkg.tex
Chapter 6.
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[]\T1/ptm/m/n/10 The class \T1/fi4/bx/n/10 "className" \T1/ptm/m/n/10 ex-tends 
\T1/fi4/bx/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/fi4/bx/n/10 "pack
age"\T1/ptm/m/n/10 , also of class
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[]\T1/ptm/m/n/10 The ar-gu-ment to \T1/fi4/bx/n/10 insertSource \T1/ptm/m/n/10 
can be an ob-ject of class

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10 it calls \T1/fi4/bx/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the
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[]\T1/ptm/m/n/10 As you might ex-pect [][]\T1/fi4/bx/n/10 setGeneric[][][] \T1/
ptm/m/n/10 and [][]\T1/fi4/bx/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate
 ob-jects of class
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[]\T1/ptm/m/n/10 In \T1/fi4/bx/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/fi4/bx/n
/10 TRUE\T1/ptm/m/n/10 , the \T1/fi4/bx/n/10 package \T1/ptm/m/n/10 slot of the
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\T1/ptm/m/n/10 In ad-di-tion, \T1/fi4/bx/n/10 removeGeneric \T1/ptm/m/n/10 re-m
oves the func-tion it-self; \T1/fi4/bx/n/10 removeMethods \T1/ptm/m/n/10 re-sto
res the
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[]\T1/ptm/m/n/10 The
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[]\T1/ptm/m/n/10 class [][]\T1/fi4/bx/n/10 MethodsList[][][] \T1/ptm/m/n/10 for
 the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar

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\T1/fi4/bx/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\
T1/fi4/bx/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by
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[1098]
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[]\T1/ptm/m/n/10 Object of class \T1/fi4/bx/n/10 "PossibleMethod" \T1/ptm/m/n/1
0 the method to use in re-sponse to a
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Underfull \hbox (badness 1087) in paragraph at lines 5518--5523
[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
[1104] [1105] [1106] [1107]
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[]\T1/ptm/m/n/10 Two op-tional method names are in-ter-preted spe-cially, \T1/f
i4/bx/n/10 initialize \T1/ptm/m/n/10 and
[1108] [1109] [1110] [1111]
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[]\T1/ptm/m/n/10 The de-fault method for \T1/fi4/bx/n/10 $initialize() \T1/ptm/
m/n/10 is equiv-a-lent to in-vok-ing the method
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Rfn.S4}) has been already used, duplicate ignored
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                   \relax 
l.6534 \aliasA{S4}{S3Part}{S4}
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l.6815 \aliasA{Ops}{S4groupGeneric}{Ops}
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l.6816 \aliasA{Summary}{S4groupGeneric}{Summary}
                                                 [1121]
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[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
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[]\T1/ptm/m/n/10 for \T1/fi4/bx/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only,
 a [][]\T1/fi4/bx/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-c
ally
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[]\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance 
in R [][]$\T1/fi4/bx/n/10 http : / / stat . stanford . edu / ~jmc4 /

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[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1156] [1157] [1158] [1159]) (./splines-pkg.tex [1160]
Chapter 7.

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[]\T1/ptm/m/n/10 Douglas M. Bates \T1/fi4/bx/n/10 <bates@stat.wisc.edu> \T1/ptm
/m/n/10 and William N. Ven-ables
[1161] [1162] [1163] [1164] [1165] [1166] [1167] [1168] [1169] [1170] [1171]
[1172] [1173] [1174]) (./stats-pkg.tex
Chapter 8.
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[1186] [1187]
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[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/fi4/bx/n/10 lm
 \T1/ptm/m/n/10 or \T1/fi4/bx/n/10 aov\T1/ptm/m/n/10 , or a for-mula for
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/fi4/bx/n/10 "two.sided"\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/fi4/bx/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1227] [1228] [1229] [1230] [1231] [1232] [1233] [1234] [1235] [1236] [1237]
[1238] [1239] [1240] [1241] [1242] [1243] [1244] [1245] [1246]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/fi4/bx/n/10 "two.sided"\T1/ptm/m/n/10 ,
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[1273]
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[]\T1/ptm/m/n/10 Objects of class \T1/fi4/bx/n/10 "hclust" \T1/ptm/m/n/10 can b
e con-verted to class \T1/fi4/bx/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method


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[]\T1/fi4/bx/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gr
am \T1/fi4/bx/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also
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[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T
1/fi4/bx/n/10 dist[][][]()\T1/ptm/m/n/10 , the
[1287] [1288]
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[]\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/fi4/bx/n/10 h
ttp : / / cran . r-[]project . org / web / views /
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[]\T1/ptm/m/n/10 Either \T1/fi4/bx/n/10 "convolution" \T1/ptm/m/n/10 or \T1/fi4
/bx/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1312] [1313]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/fi4/bx/n/10 "two.sided"\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 the char-ac-ter string \T1/fi4/bx/n/10 "Fligner-Killeen test o
f homogeneity of
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[1330] [1331] [1332]
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1333] [1334] [1335] [1336] [1337]
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[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@

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[]\T1/ptm/m/n/10 When \T1/fi4/bx/n/10 trace \T1/ptm/m/n/10 is true, calls to []
[]\T1/fi4/bx/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS i
t-er-a-tion. Hence,
[1338]
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[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
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Underfull \hbox (badness 1694) in paragraph at lines 10616--10619
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to
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estination with the same identifier (name{Rfn.hat}) has been already used, dupl
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                   \relax 
l.11069 \aliasA{hat}{influence.measures}{hat}
                                              [1352] [1353]
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[]\T1/ptm/m/n/10 The func-tion \T1/fi4/bx/n/10 hat() \T1/ptm/m/n/10 ex-ists mai
nly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
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[1399] [1400] [1401] [1402] [1403] [1404] [1405] [1406]
Underfull \hbox (badness 2503) in paragraph at lines 14432--14436
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/fi4/bx/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1407] [1408]
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[]\T1/fi4/bx/n/10 model.offset \T1/ptm/m/n/10 and \T1/fi4/bx/n/10 model.respons
e \T1/ptm/m/n/10 are equiv-a-lent to \T1/fi4/bx/n/10 model.extract(, "offset") 
\T1/ptm/m/n/10 and
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[1456]
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[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

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[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

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\T1/ptm/m/n/10 value by a fac-tor of \T1/fi4/bx/n/10 reltol * (abs(val) + relto
l) \T1/ptm/m/n/10 at a step. De-faults to

Underfull \hbox (badness 2662) in paragraph at lines 17443--17447
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/fi4/bx/n/10 "BFGS"\T1/p
tm/m/n/10 , \T1/fi4/bx/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/fi4/bx/n/10 "SANN
" \T1/ptm/m/n/10 meth-ods if
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
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[1478] [1479]
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[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
[1480] [1481] [1482] [1483] [1484] [1485]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/fi4/bx/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1486] [1487] [1488] [1489] [1490] [1491] [1492] [1493] [1494] [1495] [1496]
[1497] [1498] [1499] [1500] [1501]
Underfull \hbox (badness 10000) in paragraph at lines 20133--20139
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/fi4/bx/n/10 predict.ar[]
[][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , []
[]\T1/fi4/bx/n/10 predict.arima0[][][]\T1/ptm/m/n/10 ,
[1502] [1503] [1504] [1505] [1506] [1507] [1508] [1509] [1510] [1511] [1512]
[1513] [1514] [1515] [1516] [1517]
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[]\T1/ptm/m/n/10 Utility func-tion to be used in higher-level [][]\T1/fi4/bx/n/
10 print[][][] \T1/ptm/m/n/10 meth-ods, such as [][]\T1/fi4/bx/n/10 print.summa
ry.lm[][][]\T1/ptm/m/n/10 ,
[1518] [1519] [1520] [1521] [1522] [1523]
Underfull \hbox (badness 1337) in paragraph at lines 21416--21422
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
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[1579] [1580] [1581] [1582] [1583] [1584]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/fi4/bx/n/10 input
\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1585] [1586] [1587] [1588] [1589] [1590] [1591] [1592] [1593] [1594] [1595]
[1596] [1597] [1598] [1599] [1600] [1601] [1602] [1603]
Underfull \hbox (badness 5431) in paragraph at lines 26323--26325
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/f
i4/bx/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1604] [1605] [1606]
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[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/f
i4/bx/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1607] [1608] [1609] [1610] [1611] [1612]
Underfull \hbox (badness 1337) in paragraph at lines 26837--26841
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1613] [1614] [1615] [1616]
Underfull \hbox (badness 1616) in paragraph at lines 27127--27130
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
[1617]
Underfull \hbox (badness 4518) in paragraph at lines 27151--27154
[]\T1/ptm/m/n/10 For the \T1/fi4/bx/n/10 partial.resid=TRUE \T1/ptm/m/n/10 op-t
ion it must have a [][]\T1/fi4/bx/n/10 residuals[][][] \T1/ptm/m/n/10 method th
at ac-cepts
[1618] [1619] [1620] [1621] [1622] [1623] [1624] [1625] [1626] [1627] [1628]
[1629] [1630] [1631] [1632] [1633] [1634] [1635] [1636] [1637] [1638]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1639] [1640] [1641] [1642] [1643] [1644] [1645] [1646]
Underfull \hbox (badness 1337) in paragraph at lines 28915--28919
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1647] [1648] [1649] [1650] [1651] [1652] [1653]
Underfull \hbox (badness 1062) in paragraph at lines 29364--29369
[]\T1/ptm/m/n/10 There is a \T1/fi4/bx/n/10 summary \T1/ptm/m/n/10 method for c
on-tin-gency ta-ble ob-jects cre-ated by \T1/fi4/bx/n/10 table \T1/ptm/m/n/10 o
r \T1/fi4/bx/n/10 xtabs(*,

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[]\T1/ptm/m/n/10 By de-fault, when \T1/fi4/bx/n/10 sparse=FALSE\T1/ptm/m/n/10 ,
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Chapter 1.
[1]
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[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/fi4/bx/n/10 x \T
1/ptm/m/n/10 such that \T1/fi4/bx/n/10 1 - x != 1\T1/ptm/m/n/10 .

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\T1/ptm/m/n/10 It equals \T1/fi4/bx/n/10 double.base ^ double.neg.ulp.digits \T
1/ptm/m/n/10 if \T1/fi4/bx/n/10 double.base

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\T1/ptm/m/n/10 is 2 or \T1/fi4/bx/n/10 double.rounding \T1/ptm/m/n/10 is 0; oth
-er-wise, it is \T1/fi4/bx/n/10 (double.base ^

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\T1/fi4/bx/n/10 double.neg.ulp.digits) / 2\T1/ptm/m/n/10 . Nor-mally \T1/fi4/bx
/n/10 1.110223e-16\T1/ptm/m/n/10 . As
[2] [3]
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[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/fi4/bx/n
/10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues
[4] [5] [6] [7]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/fi4/bx/n/10 insertions\T1/ptm/m/n/10 ',
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[]\T1/ptm/m/n/10 If the calls to \T1/fi4/bx/n/10 FUN \T1/ptm/m/n/10 re-turn vec
-tors of dif-fer-ent lengths, \T1/fi4/bx/n/10 apply \T1/ptm/m/n/10 re-turns a l
ist of length
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[]\T1/ptm/m/n/10 a date-time ob-ject, or some-thing which can be co-erced by
[30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40]
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[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
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[66]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
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[82] [83] [84] [85] [86] [87] [88] [89]
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[]\T1/ptm/m/n/10 A note on `\T1/fi4/bx/n/10 file://\T1/ptm/m/n/10 ' URLs. The m
ost gen-eral form (from RFC1738) is
[90] [91]
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\T1/fi4/bx/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/
fi4/bx/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as
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[][][]\T1/fi4/bx/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-
cord-ing to a group fac-tor; [][]\T1/fi4/bx/n/10 factor[][][]\T1/ptm/m/n/10 , [
][]\T1/fi4/bx/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 table[][]
[]\T1/ptm/m/n/10 ,
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[]\T1/fi4/bx/n/10 data.frame \T1/ptm/m/n/10 con-verts each of its ar-gu-ments t
o a data frame by call-ing
[109]
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[][][]\T1/fi4/bx/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 plot.data.fra
me[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 print.data.frame[][][]\T1/ptm/m/n/
10 , [][]\T1/fi4/bx/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 na
mes[][][] \T1/ptm/m/n/10 (for the col-umn names),

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[][]\T1/fi4/bx/n/10 [.data.frame[][][] \T1/ptm/m/n/10 for sub-set-ting meth-ods
, [][]\T1/fi4/bx/n/10 Math.data.frame[][][] \T1/ptm/m/n/10 etc, about \T1/ptm/m
/it/10 Group \T1/ptm/m/n/10 meth-ods for
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[][][]$\T1/fi4/bx/n/10 http : / / en . wikipedia . org / wiki / IEEE _ 754-[]19
85$[][]\T1/ptm/m/n/10 , [][]$\T1/fi4/bx/n/10 http : / / en . wikipedia . org / 
wiki / IEEE _
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if du-pli-ca-tion should be con-sid-ered
 from the re-verse

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[]\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len
t method def-i-ni-tions for
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[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
[183]
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[][][]\T1/fi4/bx/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-b
olic links, [][]\T1/fi4/bx/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10
 file.access[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 list.files[][][]\T1/ptm/
m/n/10 , and
[184]
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[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/fi4/b
x/n/10 PATH \T1/ptm/m/n/10 and \T1/fi4/bx/n/10 R_LIBS \T1/ptm/m/n/10 with \T1/f
i4/bx/n/10 fsep =
[185] [186]
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[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/
fi4/bx/n/10 file.copy \T1/ptm/m/n/10 and
[187]
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[][][]\T1/fi4/bx/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 file.
access[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 file.path[][][]\T1/ptm/m/n/10 
, [][]\T1/fi4/bx/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 list.
files[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 unlink[][][]\T1/ptm/m/n/10 , []
[]\T1/fi4/bx/n/10 basename[][][]\T1/ptm/m/n/10 ,

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[][][]$\T1/fi4/bx/n/10 http : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/fi4/bx/n/10 http : / / en . wikipedia . org / wik
i /
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[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
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[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
\T1/fi4/bx/n/10 complex[][][] \T1/ptm/m/n/10 only for
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[][]\T1/fi4/bx/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter 
the DLL has been loaded us-ing
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\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \
T1/fi4/bx/n/10 CRoutine\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 CallRoutine\T1/ptm/m/n/
10 ,
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[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
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[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][]\T1/fi4/bx/n/10 dev.new[][][]\T1/ptm/m/n/10 : see
[248]
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[][][]\T1/fi4/bx/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 as
.complex[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 as.double[][][]\T1/ptm/m/n/1
0 , [][]\T1/fi4/bx/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 as
.logical[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 as.raw[][][]\T1/ptm/m/n/10 ,
 [][]\T1/fi4/bx/n/10 as.vector[][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
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[272]
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[]\T1/ptm/m/n/10 By de-fault \T1/fi4/bx/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, a
nd \T1/fi4/bx/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory

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\T1/ptm/m/n/10 `\T1/fi4/bx/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/fi4/bx/
n/10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `
\T1/fi4/bx/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/fi4/bx/n/10 /library\T1/ptm/m/
n/10 '
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[]\T1/ptm/m/n/10 Normally \T1/fi4/bx/n/10 library \T1/ptm/m/n/10 re-turns (in-v
is-i-bly) the list of at-tached pack-ages, but \T1/fi4/bx/n/10 TRUE \T1/ptm/m/n
/10 or \T1/fi4/bx/n/10 FALSE \T1/ptm/m/n/10 if
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[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
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[]\T1/ptm/m/n/10 The al-go-rithm used by \T1/fi4/bx/n/10 make.unique \T1/ptm/m/
n/10 has the prop-erty that \T1/fi4/bx/n/10 make.unique(c(A, B)) ==
[297] [298] [299] [300] [301] [302] [303] [304] [305] [306] [307] [308]
[309] [310] [311] [312]
Underfull \hbox (badness 1655) in paragraph at lines 20023--20029
[][][]$\T1/fi4/bx/n/10 http : / / en . wikipedia . org / wiki / Data _ compress
ion$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-sion,
[313] [314] [315]
Underfull \hbox (badness 1484) in paragraph at lines 20196--20204
[]\T1/ptm/m/n/10 The address-space limit is 2Gb un-der 32-bit Win-dows un-less 
the OS's de-fault has been
[316] [317] [318]
Underfull \hbox (badness 2790) in paragraph at lines 20446--20449
[]\T1/fi4/bx/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-
sages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 20446--20449
\T1/fi4/bx/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still 
mes-sages, so can be sup-pressed by
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[331] [332] [333] [334] [335] [336] [337] [338] [339] [340] [341] [342]
[343] [344] [345] [346] [347] [348] [349]
Underfull \hbox (badness 6220) in paragraph at lines 22449--22451
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see

[350]
Underfull \hbox (badness 10000) in paragraph at lines 22511--22520
[]\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/fi4/b
x/n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to

Underfull \hbox (badness 3525) in paragraph at lines 22511--22520
\T1/ptm/m/n/10 `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/fi4/bx/n/10 /bin/pager\T1/p
tm/m/n/10 ', which se-lects a pager via the \T1/fi4/bx/n/10 \link{PAGER} \T1/pt
m/m/n/10 en-vi-ron-ment

Underfull \hbox (badness 2142) in paragraph at lines 22521--22527
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/fi4/bx/n/10 postsc
ript[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 1968) in paragraph at lines 22534--22539
[]\T1/ptm/m/n/10 the com-mand used by [][]\T1/fi4/bx/n/10 postscript[][][] \T1/
ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 10000) in paragraph at lines 22544--22553
[]\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v
alue \T1/fi4/bx/n/10 "
[351] [352] [353]
Underfull \hbox (badness 10000) in paragraph at lines 22769--22775
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/fi4/bx
/n/10 setRepositories[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 22769--22775
\T1/ptm/m/n/10 e.g. the de-fault `\T1/fi4/bx/n/10 "http://www.bioconductor.org"
\T1/ptm/m/n/10 ' or the Eu-ro-pean mir-

Underfull \hbox (badness 10000) in paragraph at lines 22769--22775
\T1/ptm/m/n/10 ror `\T1/fi4/bx/n/10 "http://bioconductor.statistik.tu-dortmund.
de"\T1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 10000) in paragraph at lines 22781--22784
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/fi4/bx/n/10 create.post[]
[][] \T1/ptm/m/n/10 (and hence[][]\T1/fi4/bx/n/10 bug.report[][][] \T1/ptm/m/n/
10 and

Underfull \hbox (badness 2689) in paragraph at lines 22802--22804
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see

Underfull \hbox (badness 7203) in paragraph at lines 22830--22833
[]\T1/ptm/m/n/10 default email-ing method used by [][]\T1/fi4/bx/n/10 create.po
st[][][] \T1/ptm/m/n/10 and hence [][]\T1/fi4/bx/n/10 bug.report[][][] \T1/ptm/
m/n/10 and
[354]
Underfull \hbox (badness 2680) in paragraph at lines 22840--22846
\T1/ptm/m/n/10 and \T1/fi4/bx/n/10 "mac.binary.leopard"\T1/ptm/m/n/10 . Win-dow
s uses \T1/fi4/bx/n/10 "win.binary"\T1/ptm/m/n/10 . (\T1/fi4/bx/n/10 "mac.binar
y" \T1/ptm/m/n/10 and
[355] [356] [357] [358] [359] [360] [361] [362] [363] [364] [365] [366]
[367] [368] [369] [370]
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[]\T1/ptm/m/n/10 character string (or \T1/fi4/bx/n/10 NULL\T1/ptm/m/n/10 ) in-d
i-cat-ing [][]\T1/fi4/bx/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-pu
t, see
[371] [372] [373] [374] [375] [376] [377] [378] [379] [380] [381] [382]
[383] [384] [385] [386] [387] [388] [389] [390] [391] [392]
Underfull \hbox (badness 1533) in paragraph at lines 25334--25337
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[393] [394] [395] [396] [397] [398] [399] [400] [401] [402] [403] [404]
[405] [406] [407] [408] [409] [410] [411] [412] [413] [414] [415] [416]
[417] [418] [419]
Underfull \hbox (badness 6188) in paragraph at lines 27016--27018
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/fi4/bx/n/10 http : / / 
pubs . opengroup . org / onlinepubs / 9699919799 /
[420] [421] [422] [423] [424] [425] [426] [427] [428] [429] [430] [431]
[432] [433] [434] [435] [436] [437]
Underfull \hbox (badness 2142) in paragraph at lines 28174--28178
[]\T1/fi4/bx/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my 
cur-rent workspace', i.e., \T1/fi4/bx/n/10 save(list =
[438] [439] [440]
Underfull \hbox (badness 2302) in paragraph at lines 28380--28387
[]\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d
e-fined as $[]$,

Underfull \hbox (badness 2837) in paragraph at lines 28380--28387
\T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no
n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non
-missing

Underfull \hbox (badness 4060) in paragraph at lines 28380--28387
\T1/ptm/m/n/10 val-ues. In the case \T1/fi4/bx/n/10 center=TRUE\T1/ptm/m/n/10 ,
 this is the same as the stan-dard de-vi-a-tion, but

Underfull \hbox (badness 4805) in paragraph at lines 28380--28387
\T1/ptm/m/n/10 in gen-eral it is not. (To scale by the stan-dard de-vi-a-tions 
with-out cen-ter-ing, use
[441] [442]
Underfull \hbox (badness 2261) in paragraph at lines 28533--28538
[]\T1/ptm/m/n/10 If \T1/fi4/bx/n/10 strip.white \T1/ptm/m/n/10 is of length 1, 
it ap-plies to all fields; oth-er-wise, if
[443]
Underfull \hbox (badness 10000) in paragraph at lines 28560--28566
[]\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac-
ters
[444] [445] [446] [447] [448] [449] [450] [451] [452] [453] [454] [455]
[456] [457] [458] [459] [460] [461] [462] [463] [464] [465] [466] [467]
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Underfull \hbox (badness 1072) in paragraph at lines 31299--31303
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

Underfull \hbox (badness 10000) in paragraph at lines 31304--31308
[]\T1/ptm/m/n/10 The command-line op-tion `\T1/fi4/bx/n/10 --vanilla\T1/ptm/m/n
/10 ' im-plies `\T1/fi4/bx/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/fi4/bx/n/1
0 --no-init-file\T1/ptm/m/n/10 ',

Underfull \hbox (badness 10000) in paragraph at lines 31332--31338
\T1/ptm/m/n/10 and `\T1/fi4/bx/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked fo
r first in architecture-specific di-rec-to-ries, e.g.

Underfull \hbox (badness 3343) in paragraph at lines 31341--31348
\T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment 
vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 31341--31348
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 31341--31348
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/fi4/bx
/n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[487] [488] [489] [490]
Underfull \hbox (badness 1142) in paragraph at lines 31617--31623
[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/fi4/bx/n/10 for
mat \T1/ptm/m/n/10 meth-ods is \T1/fi4/bx/n/10 "%Y-%m-%d
[491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501] [502]
[503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514]
[515]
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[]\T1/ptm/m/n/10 Argument \T1/fi4/bx/n/10 names \T1/ptm/m/n/10 was in-tro-duced
 in \T1/phv/m/n/10 R \T1/ptm/m/n/10 2.13.0 to avoid need-ing the com-mon use of

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Underfull \hbox (badness 1472) in paragraph at lines 33848--33851
[]\T1/ptm/m/n/10 logical. If \T1/fi4/bx/n/10 TRUE\T1/ptm/m/n/10 , func-tions ke
ep their source in-clud-ing com-ments, see
[528] [529] [530] [531] [532] [533] [534] [535] [536] [537]
Underfull \hbox (badness 1852) in paragraph at lines 34475--34478
[]\T1/ptm/m/n/10 levels to re-move from all fac-tors in \T1/fi4/bx/n/10 ...\T1/
ptm/m/n/10 . If set to \T1/fi4/bx/n/10 NULL\T1/ptm/m/n/10 , it im-plies
[538] [539] [540] [541] [542] [543]
Underfull \hbox (badness 10000) in paragraph at lines 34855--34858
[][][]\T1/fi4/bx/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] 
[][]$http : / / developer . r-[]project . org /
[544] [545]
Underfull \hbox (badness 10000) in paragraph at lines 34976--34980
[][][]\T1/fi4/bx/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10
 removeTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 getTaskCallbackNa
mes[][][]\T1/ptm/m/n/10 \ [][]$\T1/fi4/bx/n/10 http : / / developer .
[546]
Underfull \hbox (badness 10000) in paragraph at lines 35038--35042
[][][]\T1/fi4/bx/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10
 removeTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 taskCallbackManag
er[][][]\T1/ptm/m/n/10 \ [][]$\T1/fi4/bx/n/10 http : / / developer .
[547] [548] [549] [550] [551] [552] [553] [554] [555] [556] [557] [558]
[559] [560] [561] [562] [563]
Underfull \hbox (badness 1990) in paragraph at lines 36124--36132
[]\T1/fi4/bx/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any 
er-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 36124--36132
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
]\T1/fi4/bx/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less
[564] [565] [566] [567] [568] [569] [570] [571] [572] [573] [574] [575]
[576] [577] [578] [579]
Underfull \hbox (badness 3668) in paragraph at lines 37174--37176
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[580] [581]
Underfull \hbox (badness 2401) in paragraph at lines 37274--37278
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/fi4/bx/n/10 options[][][]("wa
rn") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[582] [583] [584] [585] [586] [587]
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[589] [590] [591] [592]
Underfull \hbox (badness 5417) in paragraph at lines 37959--37963
[]\T1/fi4/bx/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rent
ly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[593]
Underfull \hbox (badness 10000) in paragraph at lines 38012--38016
[]\T1/fi4/bx/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dar
d' reg-exps, in-clud-ing el-e-ments named
[594]) (./datasets-pkg.tex
Chapter 2.
[595] [596] [597] [598] [599] [600] [601] [602] [603] [604] [605] [606]
Underfull \hbox (badness 10000) in paragraph at lines 691--693
[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/bx/n/10 c("nfnGroupedData", "nfG
roupedData", "groupedData",
[607] [608]
Underfull \hbox (badness 10000) in paragraph at lines 823--825
[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/bx/n/10 c("nfnGroupedData", "nfG
roupedData", "groupedData",
[609] [610] [611] [612] [613]
Underfull \hbox (badness 10000) in paragraph at lines 1128--1130
[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/bx/n/10 c("nfnGroupedData", "nfG
roupedData", "groupedData",
[614] [615] [616] [617] [618] [619] [620] [621] [622]
Underfull \hbox (badness 10000) in paragraph at lines 1699--1701
[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/bx/n/10 c("nfnGroupedData", "nfG
roupedData", "groupedData",
[623] [624] [625] [626] [627] [628] [629] [630]
Underfull \hbox (badness 10000) in paragraph at lines 2120--2122
[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/bx/n/10 c("nfnGroupedData", "nfG
roupedData", "groupedData",
[631] [632] [633] [634] [635] [636] [637] [638]
Underfull \hbox (badness 10000) in paragraph at lines 2582--2584
[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/bx/n/10 c("nfnGroupedData", "nfG
roupedData", "groupedData",
[639] [640] [641] [642] [643] [644]
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Overfull \vbox (20.49605pt too high) has occurred while \output is active
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[]\T1/ptm/m/n/10 This ob-ject of class \T1/fi4/bx/n/10 c("nfnGroupedData", "nfG
roupedData", "groupedData",
[655] [656] [657] [658]
Underfull \hbox (badness 1325) in paragraph at lines 3781--3784
[]\T1/ptm/m/n/10 For back-ground on Bristle-cone pines and Methuse-lah Walk, se
e [][]$\T1/fi4/bx/n/10 http : / / www . sonic . net /
[659]
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[661] [662] [663]
Underfull \vbox (badness 10000) has occurred while \output is active [664]
Underfull \vbox (badness 10000) has occurred while \output is active [665]
[666] [667] [668] [669] [670] [671] [672]) (./grDevices-pkg.tex
Chapter 3.
[673] [674] [675] [676] [677] [678] [679] [680] [681] [682] [683] [684]
[685] [686] [687] [688]
Underfull \hbox (badness 5175) in paragraph at lines 1009--1011
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
[689] [690] [691] [692] [693] [694] [695] [696] [697] [698] [699] [700]
[701]
Underfull \hbox (badness 1033) in paragraph at lines 1799--1812
\T1/fi4/bx/n/10 "pgnm"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "pgnmraw"\T1/ptm/m/n/10 
, \T1/fi4/bx/n/10 "pnm"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "pnmraw"\T1/ptm/m/n/10 
, \T1/fi4/bx/n/10 "ppm"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "ppmraw"\T1/ptm/m/n/10 
, \T1/fi4/bx/n/10 "pkm"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "pkmraw"\T1/ptm/m/n/10 
, \T1/fi4/bx/n/10 "tiffcrle"\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3758) in paragraph at lines 1799--1812
\T1/fi4/bx/n/10 "tiffg3"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "tiffg32d"\T1/ptm/m/n/
10 , \T1/fi4/bx/n/10 "tiffg4"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "tifflzw"\T1/ptm/
m/n/10 , \T1/fi4/bx/n/10 "tiffpack"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "tiff12nc"\
T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "tiff24nc"\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3128) in paragraph at lines 1799--1812
\T1/fi4/bx/n/10 "tiff32nc" "psmono"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "psgray"\T1
/ptm/m/n/10 , \T1/fi4/bx/n/10 "psrgb"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "bit"\T1/
ptm/m/n/10 , \T1/fi4/bx/n/10 "bitrgb"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "bitcmyk"
\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "pngmono"\T1/ptm/m/n/10 ,

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\T1/fi4/bx/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "pngalpha"\T1/ptm/m/n
/10 , \T1/fi4/bx/n/10 "png16"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "png256"\T1/ptm/m
/n/10 , \T1/fi4/bx/n/10 "png16m"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "png48"\T1/ptm
/m/n/10 , \T1/fi4/bx/n/10 "jpeg"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "jpeggray"\T1/
ptm/m/n/10 ,
[702]
Underfull \hbox (badness 10000) in paragraph at lines 1908--1910
[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
[703] [704] [705]
Underfull \hbox (badness 6758) in paragraph at lines 2058--2061
[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
[706] [707] [708] [709] [710] [711] [712] [713]
Underfull \hbox (badness 10000) in paragraph at lines 2555--2556

[714] [715] [716] [717] [718] [719] [720] [721] [722] [723] [724] [725]
[726] [727] [728] [729] [730] [731] [732] [733] [734]
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[736]
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[738] [739] [740] [741] [742]
Underfull \hbox (badness 1377) in paragraph at lines 4391--4396
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
[743]
Underfull \hbox (badness 1418) in paragraph at lines 4467--4474
\T1/ptm/m/n/10 it is one of \T1/fi4/bx/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/fi
4/bx/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "Courier"\T1/ptm/m/n/10 , \
T1/fi4/bx/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "Helvetica-Narrow"\T
1/ptm/m/n/10 ,

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[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East 
Asian lan-guages -- see
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[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
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[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

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\T1/ptm/m/n/10 vided: \T1/fi4/bx/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/fi4/bx/n
/10 "Bookman"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "Courier"\T1/ptm/m/n/10 , \T1/fi4
/bx/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "Helvetica-Narrow"\T1/ptm/
m/n/10 ,

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\T1/fi4/bx/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "Palatin
o" \T1/ptm/m/n/10 and \T1/fi4/bx/n/10 "Times"\T1/ptm/m/n/10 ; \T1/fi4/bx/n/10 "
URWGothic"\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 "URWBookman"\T1/ptm/m/n/10 ,
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\T1/fi4/bx/n/10 GB \T1/ptm/m/n/10 can be found at [][]$\T1/fi4/bx/n/10 ftp : / 
/ ftp . gnu . org / pub / non-[]gnu / chinese-[]fonts-[]truetype/$[][]\T1/ptm/m
/n/10 . Ken

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\T1/ptm/m/n/10 Lunde's CJKV re-sources are at [][]$\T1/fi4/bx/n/10 ftp : / / ft
p . oreilly . com / pub / examples / nutshell / cjkv /

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[]\T1/ptm/m/n/10 arguments \T1/fi4/bx/n/10 onefile\T1/ptm/m/n/10 , \T1/fi4/bx/n
/10 family\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 title\T1/ptm/m/n/10 , \T1/fi4/bx/n/1
0 fonts\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 encoding\T1/ptm/m/n/10 , \T1/fi4/bx/n/1
0 bg\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 fg\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 width\T
1/ptm/m/n/10 ,
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[]\T1/fi4/bx/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (re
d/green/blue) into HSV space
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[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
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[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/fi4/bx/n/
10 "AvantGarde"\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/fi4/bx/n/10 
number[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of
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Chapter 4.
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[]\T1/fi4/bx/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/
ptm/m/n/10 in-ter-face to the C func-tion \T1/fi4/bx/n/10 CreateAtVector() \T1/
ptm/m/n/10 in
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[][][]\T1/fi4/bx/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works
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/n/10 ,
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[]\T1/ptm/m/n/10 The main ti-tle (on top) us-ing font and size (char-ac-ter ex-
pan-sion)

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[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font and size \T1/fi4/bx/n/10 pa
r("font.sub") \T1/ptm/m/n/10 and color
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(./grid-pkg.tex
Chapter 5.

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[]\T1/ptm/m/n/10 Note that \T1/fi4/bx/n/10 preDrawDetails \T1/ptm/m/n/10 and \T
1/fi4/bx/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-t
ion of
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[][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/fi4/bx/n/10 pushViewport[][][]\T1/ptm/
m/n/10 , [][]\T1/fi4/bx/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n
/10 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 seekViewport[][][]\T
1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/fi4
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[]\T1/ptm/m/n/10 Both func-tions cre-ate an ar-rows grob (a graph-i-cal ob-ject
 de-scrib-ing ar-rows), but only
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[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
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[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
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[1023] [1024]) (./methods-pkg.tex
Chapter 6.
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[]\T1/ptm/m/n/10 The class \T1/fi4/bx/n/10 "className" \T1/ptm/m/n/10 ex-tends 
\T1/fi4/bx/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/fi4/bx/n/10 "pack
age"\T1/ptm/m/n/10 , also of class
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[]\T1/ptm/m/n/10 The ar-gu-ment to \T1/fi4/bx/n/10 insertSource \T1/ptm/m/n/10 
can be an ob-ject of class

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\T1/ptm/m/n/10 file name is passed to \T1/fi4/bx/n/10 insertSource \T1/ptm/m/n/
10 it calls \T1/fi4/bx/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the
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[]\T1/ptm/m/n/10 As you might ex-pect [][]\T1/fi4/bx/n/10 setGeneric[][][] \T1/
ptm/m/n/10 and [][]\T1/fi4/bx/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate
 ob-jects of class
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[]\T1/ptm/m/n/10 In \T1/fi4/bx/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/fi4/bx/n
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\T1/ptm/m/n/10 In ad-di-tion, \T1/fi4/bx/n/10 removeGeneric \T1/ptm/m/n/10 re-m
oves the func-tion it-self; \T1/fi4/bx/n/10 removeMethods \T1/ptm/m/n/10 re-sto
res the
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[]\T1/ptm/m/n/10 The
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[]\T1/ptm/m/n/10 class [][]\T1/fi4/bx/n/10 MethodsList[][][] \T1/ptm/m/n/10 for
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\T1/fi4/bx/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\
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[]\T1/ptm/m/n/10 Object of class \T1/fi4/bx/n/10 "PossibleMethod" \T1/ptm/m/n/1
0 the method to use in re-sponse to a
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[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
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[]\T1/ptm/m/n/10 Two op-tional method names are in-ter-preted spe-cially, \T1/f
i4/bx/n/10 initialize \T1/ptm/m/n/10 and
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[]\T1/ptm/m/n/10 The de-fault method for \T1/fi4/bx/n/10 $initialize() \T1/ptm/
m/n/10 is equiv-a-lent to in-vok-ing the method
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[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
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[]\T1/ptm/m/n/10 for \T1/fi4/bx/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only,
 a [][]\T1/fi4/bx/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-c
ally
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[]\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance 
in R [][]$\T1/fi4/bx/n/10 http : / / stat . stanford . edu / ~jmc4 /

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[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1156] [1157] [1158] [1159]) (./splines-pkg.tex [1160]
Chapter 7.

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[]\T1/ptm/m/n/10 Douglas M. Bates \T1/fi4/bx/n/10 <bates@stat.wisc.edu> \T1/ptm
/m/n/10 and William N. Ven-ables
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[1172] [1173] [1174]) (./stats-pkg.tex
Chapter 8.
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[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/fi4/bx/n/10 lm
 \T1/ptm/m/n/10 or \T1/fi4/bx/n/10 aov\T1/ptm/m/n/10 , or a for-mula for
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/fi4/bx/n/10 "two.sided"\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
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[]\T1/ptm/m/n/10 Objects of class \T1/fi4/bx/n/10 "hclust" \T1/ptm/m/n/10 can b
e con-verted to class \T1/fi4/bx/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method


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[]\T1/fi4/bx/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gr
am \T1/fi4/bx/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also
[1274] [1275] [1276] [1277] [1278]
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[1280] [1281] [1282] [1283] [1284] [1285] [1286]
Underfull \hbox (badness 10000) in paragraph at lines 6941--6944
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T
1/fi4/bx/n/10 dist[][][]()\T1/ptm/m/n/10 , the
[1287] [1288]
Underfull \hbox (badness 10000) in paragraph at lines 7078--7081
[]\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/fi4/bx/n/10 h
ttp : / / cran . r-[]project . org / web / views /
[1289] [1290] [1291] [1292] [1293] [1294] [1295] [1296] [1297] [1298] [1299]
[1300] [1301] [1302] [1303] [1304] [1305] [1306] [1307]
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[1309] [1310] [1311]
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[]\T1/ptm/m/n/10 Either \T1/fi4/bx/n/10 "convolution" \T1/ptm/m/n/10 or \T1/fi4
/bx/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1312] [1313]
Underfull \hbox (badness 2503) in paragraph at lines 8599--8603
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/fi4/bx/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1314] [1315] [1316] [1317] [1318]
Underfull \hbox (badness 2753) in paragraph at lines 8933--8935
[]\T1/ptm/m/n/10 the char-ac-ter string \T1/fi4/bx/n/10 "Fligner-Killeen test o
f homogeneity of
[1319] [1320] [1321] [1322] [1323] [1324] [1325] [1326] [1327] [1328] [1329]
[1330] [1331] [1332]
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1333] [1334] [1335] [1336] [1337]
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[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@

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[]\T1/ptm/m/n/10 When \T1/fi4/bx/n/10 trace \T1/ptm/m/n/10 is true, calls to []
[]\T1/fi4/bx/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS i
t-er-a-tion. Hence,
[1338]
Underfull \hbox (badness 1708) in paragraph at lines 10252--10255
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1339] [1340] [1341] [1342] [1343]
Underfull \hbox (badness 1694) in paragraph at lines 10616--10619
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to
[1344] [1345] [1346] [1347] [1348] [1349] [1350] [1351]pdfTeX warning (ext4): d
estination with the same identifier (name{Rfn.hat}) has been already used, dupl
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<to be read again> 
                   \relax 
l.11069 \aliasA{hat}{influence.measures}{hat}
                                              [1352] [1353]
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[]\T1/ptm/m/n/10 The func-tion \T1/fi4/bx/n/10 hat() \T1/ptm/m/n/10 ex-ists mai
nly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
[1354] [1355] [1356] [1357] [1358] [1359] [1360] [1361] [1362] [1363] [1364]
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[1376] [1377]
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[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1378] [1379] [1380] [1381] [1382] [1383] [1384] [1385] [1386] [1387]
Underfull \hbox (badness 4518) in paragraph at lines 13274--13279
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1388] [1389] [1390] [1391] [1392] [1393] [1394] [1395] [1396] [1397] [1398]
[1399] [1400] [1401] [1402] [1403] [1404] [1405] [1406]
Underfull \hbox (badness 2503) in paragraph at lines 14432--14436
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/fi4/bx/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1407] [1408]
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[1410] [1411] [1412] [1413] [1414] [1415]
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[]\T1/fi4/bx/n/10 model.offset \T1/ptm/m/n/10 and \T1/fi4/bx/n/10 model.respons
e \T1/ptm/m/n/10 are equiv-a-lent to \T1/fi4/bx/n/10 model.extract(, "offset") 
\T1/ptm/m/n/10 and
[1416] [1417] [1418] [1419] [1420] [1421] [1422] [1423] [1424] [1425] [1426]
[1427] [1428] [1429] [1430] [1431] [1432] [1433] [1434] [1435] [1436] [1437]
[1438] [1439] [1440] [1441] [1442]
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[1445] [1446] [1447] [1448] [1449] [1450] [1451] [1452] [1453] [1454] [1455]
[1456]
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[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

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[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

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\T1/ptm/m/n/10 value by a fac-tor of \T1/fi4/bx/n/10 reltol * (abs(val) + relto
l) \T1/ptm/m/n/10 at a step. De-faults to

Underfull \hbox (badness 2662) in paragraph at lines 17443--17447
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/fi4/bx/n/10 "BFGS"\T1/p
tm/m/n/10 , \T1/fi4/bx/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/fi4/bx/n/10 "SANN
" \T1/ptm/m/n/10 meth-ods if
[1457] [1458] [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466]
Underfull \hbox (badness 1337) in paragraph at lines 18048--18051
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1467] [1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475] [1476] [1477]
[1478] [1479]
Underfull \hbox (badness 1194) in paragraph at lines 18778--18781
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
[1480] [1481] [1482] [1483] [1484] [1485]
Underfull \hbox (badness 2503) in paragraph at lines 19142--19145
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/fi4/bx/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1486] [1487] [1488] [1489] [1490] [1491] [1492] [1493] [1494] [1495] [1496]
[1497] [1498] [1499] [1500] [1501]
Underfull \hbox (badness 10000) in paragraph at lines 20133--20139
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/fi4/bx/n/10 predict.ar[]
[][]\T1/ptm/m/n/10 , [][]\T1/fi4/bx/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , []
[]\T1/fi4/bx/n/10 predict.arima0[][][]\T1/ptm/m/n/10 ,
[1502] [1503] [1504] [1505] [1506] [1507] [1508] [1509] [1510] [1511] [1512]
[1513] [1514] [1515] [1516] [1517]
Underfull \hbox (badness 2111) in paragraph at lines 21078--21083
[]\T1/ptm/m/n/10 Utility func-tion to be used in higher-level [][]\T1/fi4/bx/n/
10 print[][][] \T1/ptm/m/n/10 meth-ods, such as [][]\T1/fi4/bx/n/10 print.summa
ry.lm[][][]\T1/ptm/m/n/10 ,
[1518] [1519] [1520] [1521] [1522] [1523]
Underfull \hbox (badness 1337) in paragraph at lines 21416--21422
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1524] [1525] [1526] [1527] [1528] [1529] [1530] [1531] [1532] [1533] [1534]
[1535] [1536] [1537] [1538] [1539] [1540] [1541] [1542] [1543] [1544] [1545]
[1546] [1547] [1548] [1549] [1550] [1551] [1552] [1553] [1554] [1555] [1556]
[1557] [1558] [1559] [1560] [1561] [1562] [1563] [1564] [1565] [1566] [1567]
[1568] [1569] [1570] [1571] [1572] [1573] [1574] [1575] [1576] [1577] [1578]
[1579] [1580] [1581] [1582] [1583] [1584]
Underfull \hbox (badness 3514) in paragraph at lines 25185--25190
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/fi4/bx/n/10 input
\T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1585] [1586] [1587] [1588] [1589] [1590] [1591] [1592] [1593] [1594] [1595]
[1596] [1597] [1598] [1599] [1600] [1601] [1602] [1603]
Underfull \hbox (badness 5431) in paragraph at lines 26323--26325
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/f
i4/bx/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1604] [1605] [1606]
Underfull \hbox (badness 5431) in paragraph at lines 26526--26529
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/f
i4/bx/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1607] [1608] [1609] [1610] [1611] [1612]
Underfull \hbox (badness 1337) in paragraph at lines 26837--26841
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1613] [1614] [1615] [1616]
Underfull \hbox (badness 1616) in paragraph at lines 27127--27130
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
[1617]
Underfull \hbox (badness 4518) in paragraph at lines 27151--27154
[]\T1/ptm/m/n/10 For the \T1/fi4/bx/n/10 partial.resid=TRUE \T1/ptm/m/n/10 op-t
ion it must have a [][]\T1/fi4/bx/n/10 residuals[][][] \T1/ptm/m/n/10 method th
at ac-cepts
[1618] [1619] [1620] [1621] [1622] [1623] [1624] [1625] [1626] [1627] [1628]
[1629] [1630] [1631] [1632] [1633] [1634] [1635] [1636] [1637] [1638]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1639] [1640] [1641] [1642] [1643] [1644] [1645] [1646]
Underfull \hbox (badness 1337) in paragraph at lines 28915--28919
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1647] [1648] [1649] [1650] [1651] [1652] [1653]
Underfull \hbox (badness 1062) in paragraph at lines 29364--29369
[]\T1/ptm/m/n/10 There is a \T1/fi4/bx/n/10 summary \T1/ptm/m/n/10 method for c
on-tin-gency ta-ble ob-jects cre-ated by \T1/fi4/bx/n/10 table \T1/ptm/m/n/10 o
r \T1/fi4/bx/n/10 xtabs(*,

Underfull \hbox (badness 1308) in paragraph at lines 29376--29379
[]\T1/ptm/m/n/10 By de-fault, when \T1/fi4/bx/n/10 sparse=FALSE\T1/ptm/m/n/10 ,
 a con-tin-gency ta-ble in ar-ray rep-re-sen-ta-tion of S3 class
[1654] [1655] [1656]) (./stats4-pkg.tex
Chapter 9.
[1657] [1658] [1659] [1660] [1661] [1662]pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup
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<to be read again> 
                   \relax 
l.407 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                   [1663] [1664] [1665]
[1666]) (./tcltk-pkg.tex
Chapter 10.
[1667] [1668] [1669] [1670] [1671] [1672] [1673]
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[]\T1/fi4/bx/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-in
g any Tk or Tcl com-mand by sim-ply run-ning
[1676] [1677] [1678] [1679]
Underfull \vbox (badness 10000) has occurred while \output is active [1680]
[1681] [1682] [1683] [1684] [1685] [1686] [1687]) (./tools-pkg.tex [1688]
Chapter 11.

LaTeX Font Warning: Font shape `T1/fi4/m/it' undefined
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[1689]
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\T1/fi4/bx/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 formatInProc
eedings\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 formatManual\T1/ptm/m/n/10 , \T1/fi4/bx
/n/10 formatMastersthesis\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 120--135
\T1/fi4/bx/n/10 formatMisc\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 formatPhdthesis\T1/p
tm/m/n/10 , \T1/fi4/bx/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/fi4/bx/n/10 f
ormatTechreport \T1/ptm/m/n/10 and
[1690] [1691] [1692]
Underfull \hbox (badness 2080) in paragraph at lines 251--256
\T1/ptm/m/n/10 ac-ters. It is sorted by Uni-code point and within a point al-ph
a-bet-i-cally on the glyph

Underfull \hbox (badness 2644) in paragraph at lines 251--256
\T1/ptm/m/n/10 (there can be more than one name for a Uni-code point). The data
 are in the file
[1693] [1694] [1695]
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[1697] [1698] [1699] [1700] [1701] [1702] [1703] [1704]
Underfull \hbox (badness 1082) in paragraph at lines 951--953
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or \T1/fi4/bx/n/10 NULL \T1/ptm/m/n/10 for all known trees (see
[1705] [1706] [1707] [1708] [1709]
Underfull \hbox (badness 5726) in paragraph at lines 1214--1219
[]\T1/ptm/m/n/10 If \T1/fi4/bx/n/10 reduce \T1/ptm/m/n/10 is \T1/fi4/bx/n/10 TR
UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/fi4/bx/n/10
 DependsList \T1/ptm/m/n/10 ob-ject

Underfull \hbox (badness 7221) in paragraph at lines 1214--1219
\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
[1710] [1711] [1712] [1713] [1714] [1715] [1716]

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[1717] [1718] [1719] [1720]
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[]\T1/fi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t
or of links, as re-turned by
[1721] [1722] [1723] [1724] [1725] [1726] [1727] [1728] [1729] [1730] [1731]
[1732] [1733] [1734] [1735] [1736] [1737] [1738]
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[]\T1/ptm/m/n/10 If \T1/fi4/m/sl/10 reduce \T1/ptm/m/n/10 is \T1/fi4/m/sl/10 TR
UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/fi4/m/sl/10
 DependsList \T1/ptm/m/n/10 ob-ject

Underfull \hbox (badness 7221) in paragraph at lines 2995--3000
\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
[1739]
Underfull \hbox (badness 1688) in paragraph at lines 3046--3058
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to be used in the `\T
1/fi4/m/sl/10 PACKAGES\T1/ptm/m/n/10 ' and
[1740] [1741] [1742] [1743]) (./utils-pkg.tex [1744]
Chapter 12.
[1745]
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/fi4/m/sl/10 insertions\T1/ptm/m/n/10 ',
[1746] [1747] [1748] [1749] [1750] [1751] [1752] [1753] [1754] [1755] [1756]
[1757] [1758]
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[1760] [1761] [1762] [1763]
Underfull \hbox (badness 1371) in paragraph at lines 1201--1203
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/fi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/fi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
[1764] [1765] [1766] [1767]
Underfull \hbox (badness 2057) in paragraph at lines 1469--1471
[]\T1/ptm/m/n/10 None for \T1/fi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th
is func-tion is in-voked for its side ef-fect of up-dat-ing
[1768] [1769] [1770] [1771]
Underfull \hbox (badness 1990) in paragraph at lines 1712--1715
[]\T1/ptm/m/n/10 a [][]\T1/fi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/fi4
/m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/fi4/m/sl/10 simplify \T1/ptm/m
/n/10 ar-gu-ment above. In the lat-ter case, the iden-tity
[1772] [1773] [1774] [1775] [1776] [1777] [1778] [1779] [1780] [1781] [1782]
[1783] [1784] [1785]
Underfull \hbox (badness 1430) in paragraph at lines 2631--2637
[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the \T1/fi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the

Underfull \hbox (badness 2837) in paragraph at lines 2631--2637
\T1/fi4/m/sl/10 internet.info \T1/ptm/m/n/10 op-tion. The de-tails de-pend on t
he plat-form and scheme, but set-ting
[1786]
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[]\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers 
via en-vi-ron-ment vari-able
[1787] [1788] [1789] [1790] [1791] [1792] [1793] [1794] [1795] [1796] [1797]
[1798]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.for
mat}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.3430 ...mat Unordered and Ordered Lists}{format}
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ation with the same identifier (name{Rfn.format.1}) has been already used, dupl
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l.3430 ...mat Unordered and Ordered Lists}{format}
                                                   [1799] [1800] [1801]
[1802] [1803] [1804] [1805] [1806] [1807] [1808] [1809]
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[]@textrm Debian pack-ages, main-tained by Dirk Ed-del-buet-tel, have long been
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[]@textrm See [][]@texttt http://cran.r-project.org/bin/linux/suse/README.html[
][][] @textrm for in-for-ma-tion
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 []@textrm John M. Cham-bers (2008), ``Soft-ware for Data Anal-y-sis: Pro- 

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 @textrm gram-ming with R''. Springer, New York, ISBN 978-0-387-75935-7, 

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 []@textrm Robert Gen-tle-man (2008), ``R Pro-gram-ming for Bioin-for-mat-ics''
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[]@textrm See also [][]@texttt http://en.wikipedia.org/wiki/R_programming_langu
age#Commercialized_
Chapter 4 [19] [20] Chapter 5 [21] [22] [23] [24] [25] Chapter 6 [26] [27]
Chapter 7 [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40]
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@texttt doku.php?id=tips:graphics-base:2yaxes[][][] @textrm for more in-for-ma-
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[41] [42] Chapter 8 [43] Chapter 9 [44] [45] Chapter 10 [46] [47] [48] )
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Chapter 1 Chapter 2 [1] [2] [3] [4] [5]
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[6]
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 []@textrm John M. Cham-bers (2008), ``Soft-ware for Data Anal-y-sis: Pro- 

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 @textrm gram-ming with R''. Springer, New York, ISBN 978-0-387-75935-7, 

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 []@textrm Robert Gen-tle-man (2008), ``R Pro-gram-ming for Bioin-for-mat-ics''
. 

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 @textrm Chap-man & Hall/CRC, Boca Ra-ton, FL, ISBN 978-1-420-06367-7, 

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 []@textrm William N. Ven-ables and Brian D. Rip-ley (2002), ``Mod-ern Ap-plied
 

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 @textrm Statis-tics with S'' (4th edi-tion). Springer, ISBN 0-387-95457-0, 
[7] [8] [9] [10] Chapter 3 [11] [12] [13] [14] [15] [16] [17] [18]
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[]@textrm See also [][]@texttt http://en.wikipedia.org/wiki/R_programming_langu
age#Commercialized_
Chapter 4 [19] [20] Chapter 5 [21] [22] [23] [24] [25] Chapter 6 [26] [27]
Chapter 7 [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40]
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@texttt doku.php?id=tips:graphics-base:2yaxes[][][] @textrm for more in-for-ma-
tion, in-clud-ing strong
[41] [42] Chapter 8 [43] Chapter 9 [44] [45] Chapter 10 [46] [47] [48] )
(see the transcript file for additional information)</usr/share/texmf-texlive/f
onts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texmf-texlive/fonts/type1/p
ublic/amsfonts/cm/cmbx12.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfo
nts/cm/cmcsc10.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cme
x10.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmmi10.pfb></u
sr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmmi12.pfb></usr/share/te
xmf-texlive/fonts/type1/public/amsfonts/cm/cmmi7.pfb></usr/share/texmf-texlive/
fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/texmf-texlive/fonts/type1/
public/amsfonts/cm/cmr7.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfon
ts/cm/cmr8.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmsl10.
pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr
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f-texlive/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texmf-texlive/f
onts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texmf-texlive/fonts/type1/
public/amsfonts/cm/cmtt12.pfb></usr/share/texmf-texlive/fonts/type1/public/amsf
onts/cm/cmtt9.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/latxfon
t/lcircle1.pfb>
Output written on R-FAQ.pdf (52 pages, 487838 bytes).
Transcript written on R-FAQ.log.
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Loading texinfo [version 2008-04-18.10]: pdf, fonts, page headings, tables,
conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.3 <23 July 2005>
) localization, formatting, and turning on texinfo input format.) (./R-FAQ.aux)
(/usr/share/texmf/tex/texinfo/txi-en.tex) [1{/var/lib/texmf/fonts/map/pdftex/up
dmap/pdftex.map}] (./R-FAQ.toc [-1] [-2]) [-3] (./R-FAQ.toc) (./R-FAQ.toc)
Chapter 1 Chapter 2 [1] [2] [3] [4] [5]
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[]@textrm Debian pack-ages, main-tained by Dirk Ed-del-buet-tel, have long been
 part of

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[]@textrm See [][]@texttt http://cran.r-project.org/bin/linux/suse/README.html[
][][] @textrm for in-for-ma-tion
[6]
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 []@textrm John M. Cham-bers (2008), ``Soft-ware for Data Anal-y-sis: Pro- 

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 @textrm gram-ming with R''. Springer, New York, ISBN 978-0-387-75935-7, 

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 []@textrm Robert Gen-tle-man (2008), ``R Pro-gram-ming for Bioin-for-mat-ics''
. 

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 @textrm Chap-man & Hall/CRC, Boca Ra-ton, FL, ISBN 978-1-420-06367-7, 

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 []@textrm William N. Ven-ables and Brian D. Rip-ley (2002), ``Mod-ern Ap-plied
 

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 @textrm Statis-tics with S'' (4th edi-tion). Springer, ISBN 0-387-95457-0, 
[7] [8] [9] [10] Chapter 3 [11] [12] [13] [14] [15] [16] [17] [18]
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[]@textrm See also [][]@texttt http://en.wikipedia.org/wiki/R_programming_langu
age#Commercialized_
Chapter 4 [19] [20] Chapter 5 [21] [22] [23] [24] [25] Chapter 6 [26] [27]
Chapter 7 [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40]
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@texttt doku.php?id=tips:graphics-base:2yaxes[][][] @textrm for more in-for-ma-
tion, in-clud-ing strong
[41] [42] Chapter 8 [43] Chapter 9 [44] [45] Chapter 10 [46] [47] [48] )
(see the transcript file for additional information)</usr/share/texmf-texlive/f
onts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texmf-texlive/fonts/type1/p
ublic/amsfonts/cm/cmbx12.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfo
nts/cm/cmcsc10.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cme
x10.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmmi10.pfb></u
sr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmmi12.pfb></usr/share/te
xmf-texlive/fonts/type1/public/amsfonts/cm/cmmi7.pfb></usr/share/texmf-texlive/
fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/texmf-texlive/fonts/type1/
public/amsfonts/cm/cmr7.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfon
ts/cm/cmr8.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmsl10.
pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr
/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texm
f-texlive/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texmf-texlive/f
onts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texmf-texlive/fonts/type1/
public/amsfonts/cm/cmtt12.pfb></usr/share/texmf-texlive/fonts/type1/public/amsf
onts/cm/cmtt9.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/latxfon
t/lcircle1.pfb>
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TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-admin.texi
This is pdfTeX, Version 3.1415926-1.40.10 (TeX Live 2009/Debian)
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Loading texinfo [version 2008-04-18.10]: pdf, fonts, page headings, tables,
conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.3 <23 July 2005>
) localization, formatting, and turning on texinfo input format.)
(./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1
[1] Chapter 2 [2] Cross reference values unknown; you must run TeX again.
[3] [4] [5] [6]
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@textrm head-ers are not in-stalled into a sub-di-rec-tory you prob-a-bly want 
some-thing like
[7]
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@textrm be the last in-stalled, but architecture-specific ver-sions will be ava
il-able in e.g.
[8]
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@textrm the ap-pro-pri-ate `@texttt bin[]@textrm '[] di-rec-tory, `@textttsl R_
HOME@texttt /bin/i386[]@textrm '[] or `@textttsl R_HOME@texttt /bin/x64[]@textr
m '[]. For

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[]@textrm One that may be use-ful when work-ing on R it-self is the op-tion `@t
exttt --disable-byte-compilation[]@textrm '[],
[9] Chapter 3 [10] [11]
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 []@textrm or per-haps bet-ter, set the en-vi-ron-ment vari-able @texttt TAR_OP
TIONS[] @textrm to the value

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 []@textrm You need @texttt libpng[]@textrm , @texttt jpeg[] @textrm and @textt
t libtiff[] @textrm sources (avail-able, e.g., from
[12]
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[]@textrm Running @texttt make[] @textrm in `@textttsl R_HOME@texttt /src/gnuwi
n32/bitmap[]@textrm '[] or @texttt make bitmapdll[] @textrm in

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@textrm `@textttsl R_HOME@texttt /src/gnuwin32[]@textrm '[] should build `@text
tt Rbitmap.dll[]@textrm '[] and in-stall it un-der

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@textrm braries built by Si-mon Ur-banek at [][]@texttt http://www.rforge.net/C
airo/files/cairo-current-win.tar.gz[][][]@textrm .
[13] [14] [15] Chapter 4 [16]
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[]@textrm For com-pat-i-bil-ity with the @reducedrm CRAN @textrm dis-tri-bu-tio
n you may need to spec-ify
Chapter 5 [17] Chapter 6 [18]
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 []@texttt [1] "datasets"  "utils"     "grDevices" "graphics"  "stats"     "met
hods"[] 
[19] [20] [21]
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 []@textrm where there is a non-empty `@texttt configure.win[]@textrm '[] scrip
t, or a file

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 @textrm `@texttt src/Makefile.win[]@textrm '[] (with some ex-cep-tions where t
he pack-age is

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 @textrm known to have an architecture-independent `@texttt configure.win[]@tex
trm '[], or if
[22] [23]
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 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl lib-dir @text
tt --extra-arch --install=check:@textttsl pkgname@texttt .log @textttsl pkg-
[24]
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 []@texttt .../bin/i386/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --
install=check:@textttsl pkgname@texttt .log @textttsl pkg-

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 []@texttt .../bin/x64/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --i
nstall=check:@textttsl pkgname@texttt .log @textttsl pkg-
Chapter 7 [25]
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 @texttt en.wikipedia.org/wiki/ISO_3166[][][]@textrm ). Some-times the com-bi-n
a-tion of lan-guage
[26]
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@textrm found at [][]@texttt http://msdn.microsoft.com/library/default.asp?url=
/library/en-us/
[27] Chapter 8 [28] [29] Chapter 9 [30] [31] [32] Appendix A [33] [34] [35]
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[][][]@smallrm also known as @smalltt ttf-mscorefonts-installer[] @smallrm in t
he De-bian/Ubuntu world: see also

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@textrm by `@texttt --with-system-zlib[]@textrm '[] (ver-sion 1.2.3 or later), 
`@texttt --with-system-bzlib[]@textrm '[] or
[36]
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[]@textrm The @texttt bitmap[] @textrm and @texttt dev2bitmap[] @textrm de-vice
s and also @texttt embedFonts()[] @textrm use ghost-script

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@textrm JVM, which are stored in en-vi-ron-ment vari-able []@texttt R_JAVA_LD_L
IBRARY_PATH[] @textrm in file
[37] [38]
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[]@textrm For In-tel pro-ces-sors un-der Linux, there is In-tel's Math Ker-nel 
Li-brary

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@textrm ([][]@texttt http://www.intel.com/software/products/mkl/[][][]@textrm )
. You are strongly en-cour-
[39]
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 []@texttt MKL="-L${MKL_LIB_PATH} -lmkl_gf_lp64 -lmkl_sequential -lmkl_lapack -
lmkl_core"[] 
[40]
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 []@texttt ln -s /opt/acml4.4.0/gfortran64_mp/lib/libacml_mp.so @textttsl R_HOM
E@texttt /lib/libRblas.so[] 
[41] Appendix B [42] [43] [44]
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@textrm `@texttt -L/usr/local/lib64[]@textrm '[] on most 64-bit Linux OSes) and
 `@texttt -I/usr/local/include[]@textrm '[]
[45] [46]
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[]@textrm To com-pile a pro-fil-ing ver-sion of R, one might for ex-am-ple want
 to use
[47] Appendix C [48] [49] [50]
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@textrm is ap-pro-pri-ate since most (but not all) soft-ware in-stalls its 64-b
it li-braries in
[51] [52] [53] [54]
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[]@textrm A large se-lec-tion of Open Source soft-ware can be in-stalled from [
][]@texttt http://www.opencsw.org[][][]

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 []@texttt PKG_CONFIG_PATH=/opt/csw/lib/sparcv9/pkgconfig:/usr/lib/sparcv9/pkgc
onfig[] 
[55]
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 []@texttt FLIBS = -R/opt/solstudio12.2/prod/lib/sparc/64 -lifai -lsunimath -lf
ai -lfai2 \[] 
[56] [57]
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@textrm Ap-pli-ca-tions'' ([][]@texttt http://www-03.ibm.com/systems/power/soft
ware/aix/linux/[][][]@textrm )
[58] [59] [60]
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[]@textrm It seems that @texttt gcc[] @textrm 3.4.x and later on `@texttt ix86[
]@textrm '[] Linux de-feat at-tempts by the
Appendix D [61] [62] [63]
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[]@textrm You may need to set the en-vi-ron-ment vari-able @texttt CYGWIN[] @te
xtrm to a value in-clud-ing

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[]@textrm The toolchain we use is tech-ni-cally a cross-compiler: the tools run
 un-

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@textrm der 32-bit Win-dows but pro-duce code to run un-der 64-bit Win-dows.$[]
$ This

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@textrm is based on files from [][]@texttt http://sourceforge.net/projects/ming
w-w64/files/

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@texttt Toolchains%20targetting%20Win64/Automated%20Builds/[][][] @textrm and h
as a name like
[64] (Function and variable index) [65] (Concept index) [66]
(Environment variable index) [67] [68] )
(see the transcript file for additional information)</usr/share/texmf-texlive/f
onts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texmf-texlive/fonts/type1/p
ublic/amsfonts/cm/cmbx12.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfo
nts/cm/cmr10.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmr7.
pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/sha
re/texmf-texlive/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texmf-texl
ive/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texmf-texlive/fonts/t
ype1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texmf-texlive/fonts/type1/publ
ic/amsfonts/cm/cmsy10.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts
/cm/cmti10.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmtt10.
pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmtt9.pfb>
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Transcript written on R-admin.log.
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(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2008-04-18.10]: pdf, fonts, page headings, tables,
conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.3 <23 July 2005>
) localization, formatting, and turning on texinfo input format.)
(./R-admin.aux) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex))
(./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}]
[2] (./R-admin.toc [-1] [-2]) [-3] (./R-admin.toc) (./R-admin.toc) Chapter 1
[1] Chapter 2 [2] [3] [4] [5] [6]
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@textrm head-ers are not in-stalled into a sub-di-rec-tory you prob-a-bly want 
some-thing like
[7]
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@textrm be the last in-stalled, but architecture-specific ver-sions will be ava
il-able in e.g.
[8]
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@textrm the ap-pro-pri-ate `@texttt bin[]@textrm '[] di-rec-tory, `@textttsl R_
HOME@texttt /bin/i386[]@textrm '[] or `@textttsl R_HOME@texttt /bin/x64[]@textr
m '[]. For

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[]@textrm One that may be use-ful when work-ing on R it-self is the op-tion `@t
exttt --disable-byte-compilation[]@textrm '[],
[9] Chapter 3 [10] [11]
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 []@textrm or per-haps bet-ter, set the en-vi-ron-ment vari-able @texttt TAR_OP
TIONS[] @textrm to the value

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 []@textrm You need @texttt libpng[]@textrm , @texttt jpeg[] @textrm and @textt
t libtiff[] @textrm sources (avail-able, e.g., from
[12]
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[]@textrm Running @texttt make[] @textrm in `@textttsl R_HOME@texttt /src/gnuwi
n32/bitmap[]@textrm '[] or @texttt make bitmapdll[] @textrm in

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@textrm `@textttsl R_HOME@texttt /src/gnuwin32[]@textrm '[] should build `@text
tt Rbitmap.dll[]@textrm '[] and in-stall it un-der

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@textrm braries built by Si-mon Ur-banek at [][]@texttt http://www.rforge.net/C
airo/files/cairo-current-win.tar.gz[][][]@textrm .
[13] [14] [15] Chapter 4 [16]
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[]@textrm For com-pat-i-bil-ity with the @reducedrm CRAN @textrm dis-tri-bu-tio
n you may need to spec-ify
Chapter 5 [17] Chapter 6 [18]
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 []@texttt [1] "datasets"  "utils"     "grDevices" "graphics"  "stats"     "met
hods"[] 
[19] [20] [21]
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 []@textrm where there is a non-empty `@texttt configure.win[]@textrm '[] scrip
t, or a file

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 @textrm `@texttt src/Makefile.win[]@textrm '[] (with some ex-cep-tions where t
he pack-age is

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 @textrm known to have an architecture-independent `@texttt configure.win[]@tex
trm '[], or if
[22] [23]
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 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl lib-dir @text
tt --extra-arch --install=check:@textttsl pkgname@texttt .log @textttsl pkg-
[24]
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 []@texttt .../bin/i386/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --
install=check:@textttsl pkgname@texttt .log @textttsl pkg-

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 []@texttt .../bin/x64/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --i
nstall=check:@textttsl pkgname@texttt .log @textttsl pkg-
Chapter 7 [25]
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 @texttt en.wikipedia.org/wiki/ISO_3166[][][]@textrm ). Some-times the com-bi-n
a-tion of lan-guage
[26]
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@textrm found at [][]@texttt http://msdn.microsoft.com/library/default.asp?url=
/library/en-us/
[27] Chapter 8 [28] [29] Chapter 9 [30] [31] [32] Appendix A [33] [34] [35]
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[][][]@smallrm also known as @smalltt ttf-mscorefonts-installer[] @smallrm in t
he De-bian/Ubuntu world: see also

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@textrm by `@texttt --with-system-zlib[]@textrm '[] (ver-sion 1.2.3 or later), 
`@texttt --with-system-bzlib[]@textrm '[] or
[36]
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[]@textrm The @texttt bitmap[] @textrm and @texttt dev2bitmap[] @textrm de-vice
s and also @texttt embedFonts()[] @textrm use ghost-script

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@textrm JVM, which are stored in en-vi-ron-ment vari-able []@texttt R_JAVA_LD_L
IBRARY_PATH[] @textrm in file
[37] [38]
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[]@textrm For In-tel pro-ces-sors un-der Linux, there is In-tel's Math Ker-nel 
Li-brary

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@textrm ([][]@texttt http://www.intel.com/software/products/mkl/[][][]@textrm )
. You are strongly en-cour-
[39]
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 []@texttt MKL="-L${MKL_LIB_PATH} -lmkl_gf_lp64 -lmkl_sequential -lmkl_lapack -
lmkl_core"[] 
[40]
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 []@texttt ln -s /opt/acml4.4.0/gfortran64_mp/lib/libacml_mp.so @textttsl R_HOM
E@texttt /lib/libRblas.so[] 
[41] Appendix B [42] [43] [44]
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@textrm `@texttt -L/usr/local/lib64[]@textrm '[] on most 64-bit Linux OSes) and
 `@texttt -I/usr/local/include[]@textrm '[]
[45] [46]
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[]@textrm To com-pile a pro-fil-ing ver-sion of R, one might for ex-am-ple want
 to use
[47] Appendix C [48] [49] [50]
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@textrm is ap-pro-pri-ate since most (but not all) soft-ware in-stalls its 64-b
it li-braries in
[51] [52] [53] [54]
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[]@textrm A large se-lec-tion of Open Source soft-ware can be in-stalled from [
][]@texttt http://www.opencsw.org[][][]

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 []@texttt PKG_CONFIG_PATH=/opt/csw/lib/sparcv9/pkgconfig:/usr/lib/sparcv9/pkgc
onfig[] 
[55]
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 []@texttt FLIBS = -R/opt/solstudio12.2/prod/lib/sparc/64 -lifai -lsunimath -lf
ai -lfai2 \[] 
[56] [57]
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@textrm Ap-pli-ca-tions'' ([][]@texttt http://www-03.ibm.com/systems/power/soft
ware/aix/linux/[][][]@textrm )
[58] [59] [60]
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[]@textrm It seems that @texttt gcc[] @textrm 3.4.x and later on `@texttt ix86[
]@textrm '[] Linux de-feat at-tempts by the
Appendix D [61] [62] [63]
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[]@textrm You may need to set the en-vi-ron-ment vari-able @texttt CYGWIN[] @te
xtrm to a value in-clud-ing

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[]@textrm The toolchain we use is tech-ni-cally a cross-compiler: the tools run
 un-

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@textrm der 32-bit Win-dows but pro-duce code to run un-der 64-bit Win-dows.$[]
$ This

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@textrm is based on files from [][]@texttt http://sourceforge.net/projects/ming
w-w64/files/

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@texttt Toolchains%20targetting%20Win64/Automated%20Builds/[][][] @textrm and h
as a name like
[64] (Function and variable index) [65] (./R-admin.vrs) (Concept index)
[66] (./R-admin.cps) (Environment variable index) [67] (./R-admin.ens) [68] )
(see the transcript file for additional information)</usr/share/texmf-texlive/f
onts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texmf-texlive/fonts/type1/p
ublic/amsfonts/cm/cmbx12.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfo
nts/cm/cmmi10.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmmi
12.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmmi9.pfb></usr
/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/texmf
-texlive/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texmf-texlive/font
s/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texmf-texlive/fonts/type1/publi
c/amsfonts/cm/cmr9.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm
/cmsl10.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmsltt10.p
fb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/sh
are/texmf-texlive/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texmf-t
exlive/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texmf-texlive/font
s/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-admin.pdf (73 pages, 562774 bytes).
Transcript written on R-admin.log.
This is pdfTeX, Version 3.1415926-1.40.10 (TeX Live 2009/Debian)
entering extended mode
(/build/buildd/r-base-2.14.1/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2008-04-18.10]: pdf, fonts, page headings, tables,
conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.3 <23 July 2005>
) localization, formatting, and turning on texinfo input format.)
(./R-admin.aux) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex))
(./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}]
[2] (./R-admin.toc [-1] [-2]) [-3] (./R-admin.toc) (./R-admin.toc) Chapter 1
[1] Chapter 2 [2] [3] [4] [5] [6]
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@textrm head-ers are not in-stalled into a sub-di-rec-tory you prob-a-bly want 
some-thing like
[7]
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@textrm be the last in-stalled, but architecture-specific ver-sions will be ava
il-able in e.g.
[8]
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@textrm the ap-pro-pri-ate `@texttt bin[]@textrm '[] di-rec-tory, `@textttsl R_
HOME@texttt /bin/i386[]@textrm '[] or `@textttsl R_HOME@texttt /bin/x64[]@textr
m '[]. For

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[]@textrm One that may be use-ful when work-ing on R it-self is the op-tion `@t
exttt --disable-byte-compilation[]@textrm '[],
[9] Chapter 3 [10] [11]
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 []@textrm or per-haps bet-ter, set the en-vi-ron-ment vari-able @texttt TAR_OP
TIONS[] @textrm to the value

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 []@textrm You need @texttt libpng[]@textrm , @texttt jpeg[] @textrm and @textt
t libtiff[] @textrm sources (avail-able, e.g., from
[12]
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[]@textrm Running @texttt make[] @textrm in `@textttsl R_HOME@texttt /src/gnuwi
n32/bitmap[]@textrm '[] or @texttt make bitmapdll[] @textrm in

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@textrm `@textttsl R_HOME@texttt /src/gnuwin32[]@textrm '[] should build `@text
tt Rbitmap.dll[]@textrm '[] and in-stall it un-der

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@textrm braries built by Si-mon Ur-banek at [][]@texttt http://www.rforge.net/C
airo/files/cairo-current-win.tar.gz[][][]@textrm .
[13] [14] [15] Chapter 4 [16]
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[]@textrm For com-pat-i-bil-ity with the @reducedrm CRAN @textrm dis-tri-bu-tio
n you may need to spec-ify
Chapter 5 [17] Chapter 6 [18]
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 []@texttt [1] "datasets"  "utils"     "grDevices" "graphics"  "stats"     "met
hods"[] 
[19] [20] [21]
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 []@textrm where there is a non-empty `@texttt configure.win[]@textrm '[] scrip
t, or a file

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 @textrm `@texttt src/Makefile.win[]@textrm '[] (with some ex-cep-tions where t
he pack-age is

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 @textrm known to have an architecture-independent `@texttt configure.win[]@tex
trm '[], or if
[22] [23]
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 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl lib-dir @text
tt --extra-arch --install=check:@textttsl pkgname@texttt .log @textttsl pkg-
[24]
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 []@texttt .../bin/i386/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --
install=check:@textttsl pkgname@texttt .log @textttsl pkg-

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 []@texttt .../bin/x64/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --i
nstall=check:@textttsl pkgname@texttt .log @textttsl pkg-
Chapter 7 [25]
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 @texttt en.wikipedia.org/wiki/ISO_3166[][][]@textrm ). Some-times the com-bi-n
a-tion of lan-guage
[26]
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@textrm found at [][]@texttt http://msdn.microsoft.com/library/default.asp?url=
/library/en-us/
[27] Chapter 8 [28] [29] Chapter 9 [30] [31] [32] Appendix A [33] [34] [35]
Underfull \hbox (badness 10000) in paragraph at lines 2773--2775
[][][]@smallrm also known as @smalltt ttf-mscorefonts-installer[] @smallrm in t
he De-bian/Ubuntu world: see also

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@textrm by `@texttt --with-system-zlib[]@textrm '[] (ver-sion 1.2.3 or later), 
`@texttt --with-system-bzlib[]@textrm '[] or
[36]
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[]@textrm The @texttt bitmap[] @textrm and @texttt dev2bitmap[] @textrm de-vice
s and also @texttt embedFonts()[] @textrm use ghost-script

Underfull \hbox (badness 2302) in paragraph at lines 2877--2883
@textrm JVM, which are stored in en-vi-ron-ment vari-able []@texttt R_JAVA_LD_L
IBRARY_PATH[] @textrm in file
[37] [38]
Underfull \hbox (badness 10000) in paragraph at lines 3091--3095
[]@textrm For In-tel pro-ces-sors un-der Linux, there is In-tel's Math Ker-nel 
Li-brary

Underfull \hbox (badness 10000) in paragraph at lines 3091--3095
@textrm ([][]@texttt http://www.intel.com/software/products/mkl/[][][]@textrm )
. You are strongly en-cour-
[39]
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 []@texttt MKL="-L${MKL_LIB_PATH} -lmkl_gf_lp64 -lmkl_sequential -lmkl_lapack -
lmkl_core"[] 
[40]
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 []@texttt ln -s /opt/acml4.4.0/gfortran64_mp/lib/libacml_mp.so @textttsl R_HOM
E@texttt /lib/libRblas.so[] 
[41] Appendix B [42] [43] [44]
Underfull \hbox (badness 3428) in paragraph at lines 3462--3475
@textrm `@texttt -L/usr/local/lib64[]@textrm '[] on most 64-bit Linux OSes) and
 `@texttt -I/usr/local/include[]@textrm '[]
[45] [46]
Underfull \hbox (badness 3701) in paragraph at lines 3697--3701
[]@textrm To com-pile a pro-fil-ing ver-sion of R, one might for ex-am-ple want
 to use
[47] Appendix C [48] [49] [50]
Underfull \hbox (badness 3029) in paragraph at lines 3878--3882
@textrm is ap-pro-pri-ate since most (but not all) soft-ware in-stalls its 64-b
it li-braries in
[51] [52] [53] [54]
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[]@textrm A large se-lec-tion of Open Source soft-ware can be in-stalled from [
][]@texttt http://www.opencsw.org[][][]

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 []@texttt PKG_CONFIG_PATH=/opt/csw/lib/sparcv9/pkgconfig:/usr/lib/sparcv9/pkgc
onfig[] 
[55]
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 []@texttt FLIBS = -R/opt/solstudio12.2/prod/lib/sparc/64 -lifai -lsunimath -lf
ai -lfai2 \[] 
[56] [57]
Underfull \hbox (badness 10000) in paragraph at lines 4500--4526
@textrm Ap-pli-ca-tions'' ([][]@texttt http://www-03.ibm.com/systems/power/soft
ware/aix/linux/[][][]@textrm )
[58] [59] [60]
Underfull \hbox (badness 2486) in paragraph at lines 4670--4679
[]@textrm It seems that @texttt gcc[] @textrm 3.4.x and later on `@texttt ix86[
]@textrm '[] Linux de-feat at-tempts by the
Appendix D [61] [62] [63]
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[]@textrm You may need to set the en-vi-ron-ment vari-able @texttt CYGWIN[] @te
xtrm to a value in-clud-ing

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[]@textrm The toolchain we use is tech-ni-cally a cross-compiler: the tools run
 un-

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@textrm der 32-bit Win-dows but pro-duce code to run un-der 64-bit Win-dows.$[]
$ This

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@textrm is based on files from [][]@texttt http://sourceforge.net/projects/ming
w-w64/files/

Underfull \hbox (badness 10000) in paragraph at lines 4939--4949
@texttt Toolchains%20targetting%20Win64/Automated%20Builds/[][][] @textrm and h
as a name like
[64] (Function and variable index) [65] (./R-admin.vrs) (Concept index)
[66] (./R-admin.cps) (Environment variable index) [67] (./R-admin.ens) [68] )
(see the transcript file for additional information)</usr/share/texmf-texlive/f
onts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texmf-texlive/fonts/type1/p
ublic/amsfonts/cm/cmbx12.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfo
nts/cm/cmmi10.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmmi
12.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmmi9.pfb></usr
/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/texmf
-texlive/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texmf-texlive/font
s/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texmf-texlive/fonts/type1/publi
c/amsfonts/cm/cmr9.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm
/cmsl10.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmsltt10.p
fb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/sh
are/texmf-texlive/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texmf-t
exlive/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texmf-texlive/font
s/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-admin.pdf (73 pages, 562774 bytes).
Transcript written on R-admin.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-data.texi
This is pdfTeX, Version 3.1415926-1.40.10 (TeX Live 2009/Debian)
entering extended mode
(/build/buildd/r-base-2.14.1/doc/manual/R-data.t2d/pdf/xtr/R-data.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2008-04-18.10]: pdf, fonts, page headings, tables,
conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.3 <23 July 2005>
) localization, formatting, and turning on texinfo input format.)
(./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1]
(Acknowledgements)
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 @textbf dataframes2xls| 

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 @textbf RPostgreSQL| 

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 @textbf xlsReadWrite| 
Chapter 1 [1] Cross reference values unknown; you must run TeX again.
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[][][]@smallrm Currently not avail-able from that repos-i-tory but as a source 
pack-age for down-load from
[2]
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[]@textrm `BOMs' (Byte Or-der Marks, [][]@texttt http://en.wikipedia.org/wiki/B
yte_order_mark[][][]@textrm )
[3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13] [14]
Chapter 4 [15] [16] [17] [18]
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[]@textrm Package @textbf RMongo @textrm pro-vides an R in-ter-face to a Java c
lient for `Mon-goDB'

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@textrm ([][]@texttt http://en.wikipedia.org/wiki/MongoDB[][][]@textrm ) data-b
ases, which are queried us-ing
[19]
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[]@textrm On Mac OS X the Ac-tual Tech-nolo-gies ([][]@texttt http://www.actual
technologies.com/product_
[20] [21] Chapter 5 [22]
Underfull \hbox (badness 10000) in paragraph at lines 1752--1758
[]@textrm Packages @textbf hdf5@textrm , @textbf h5r@textrm , Bio-con-duc-tor's
 @textbf rhdf5@textrm , @textbf RNetCDF@textrm , @textbf ncdf @textrm and @text
bf ncdf4 @textrm on

Underfull \hbox (badness 10000) in paragraph at lines 1752--1758
@reducedrm CRAN @textrm pro-vide in-ter-faces to @reducedrm NASA@textrm 's HDF5
 (Hi-er-ar-chi-cal Data For-mat, see
Chapter 6 [23] [24] [25] [26] [27] Chapter 7 [28]
Underfull \hbox (badness 2538) in paragraph at lines 2211--2218
@textrm ap-pli-ca-tions to call meth-ods, or op-er-a-tions, in server ob-jects 
run-ning in other
Chapter 8 [29]
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[]@textrm If you do not have Ex-cel, many other pro-grams are able to read such


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@textrm am-ple Gnu-meric ([][]@texttt http://www.gnome.org/projects/gnumeric/[]
[][]@textrm ) and OpenOf-fice
Appendix A [30]
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@textrm B. D. Rip-ley (2001) Con-nec-tions. @texttt \@textit R News@textrm , @t
extbf 1/1@textrm , 16--7. @texttt \[][]http://www.r-project.org/doc/Rnews/Rnews
_
(Function and variable index) [31] (Concept index) [32] [33] )
(see the transcript file for additional information)</usr/share/texmf-texlive/f
onts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texmf-texlive/fonts/type1/p
ublic/amsfonts/cm/cmbx12.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfo
nts/cm/cmmi10.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmr1
0.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/s
hare/texmf-texlive/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texmf-te
xlive/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texmf-texlive/fon
ts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texmf-texlive/fonts/type1/pu
blic/amsfonts/cm/cmti10.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfon
ts/cm/cmtt10.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmtt1
2.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-data.pdf (36 pages, 293189 bytes).
Transcript written on R-data.log.
This is pdfTeX, Version 3.1415926-1.40.10 (TeX Live 2009/Debian)
entering extended mode
(/build/buildd/r-base-2.14.1/doc/manual/R-data.t2d/pdf/xtr/R-data.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2008-04-18.10]: pdf, fonts, page headings, tables,
conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.3 <23 July 2005>
) localization, formatting, and turning on texinfo input format.) (./R-data.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-data.toc
[-1]) [-2] (./R-data.toc) (./R-data.toc) (Acknowledgements)
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 @textbf dataframes2xls| 

Overfull \hbox (2.70708pt too wide) in paragraph at lines 108--108
 @textbf RPostgreSQL| 

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 @textbf xlsReadWrite| 
Chapter 1 [1]
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[][][]@smallrm Currently not avail-able from that repos-i-tory but as a source 
pack-age for down-load from
[2]
Underfull \hbox (badness 2343) in paragraph at lines 249--259
[]@textrm `BOMs' (Byte Or-der Marks, [][]@texttt http://en.wikipedia.org/wiki/B
yte_order_mark[][][]@textrm )
[3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13] [14]
Chapter 4 [15] [16] [17] [18]
Underfull \hbox (badness 3989) in paragraph at lines 1354--1358
[]@textrm Package @textbf RMongo @textrm pro-vides an R in-ter-face to a Java c
lient for `Mon-goDB'

Underfull \hbox (badness 10000) in paragraph at lines 1354--1358
@textrm ([][]@texttt http://en.wikipedia.org/wiki/MongoDB[][][]@textrm ) data-b
ases, which are queried us-ing
[19]
Overfull \hbox (9.3377pt too wide) in paragraph at lines 1492--1496
[]@textrm On Mac OS X the Ac-tual Tech-nolo-gies ([][]@texttt http://www.actual
technologies.com/product_
[20] [21] Chapter 5 [22]
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[]@textrm Packages @textbf hdf5@textrm , @textbf h5r@textrm , Bio-con-duc-tor's
 @textbf rhdf5@textrm , @textbf RNetCDF@textrm , @textbf ncdf @textrm and @text
bf ncdf4 @textrm on

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@reducedrm CRAN @textrm pro-vide in-ter-faces to @reducedrm NASA@textrm 's HDF5
 (Hi-er-ar-chi-cal Data For-mat, see
Chapter 6 [23] [24] [25] [26] [27] Chapter 7 [28]
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@textrm ap-pli-ca-tions to call meth-ods, or op-er-a-tions, in server ob-jects 
run-ning in other
Chapter 8 [29]
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[]@textrm If you do not have Ex-cel, many other pro-grams are able to read such


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@textrm am-ple Gnu-meric ([][]@texttt http://www.gnome.org/projects/gnumeric/[]
[][]@textrm ) and OpenOf-fice
Appendix A [30]
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@textrm B. D. Rip-ley (2001) Con-nec-tions. @texttt \@textit R News@textrm , @t
extbf 1/1@textrm , 16--7. @texttt \[][]http://www.r-project.org/doc/Rnews/Rnews
_
(Function and variable index) [31] (./R-data.vrs [32]) (Concept index) [33]
(./R-data.cps) [34] )
(see the transcript file for additional information)</usr/share/texmf-texlive/f
onts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texmf-texlive/fonts/type1/p
ublic/amsfonts/cm/cmbx12.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfo
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12.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmmi9.pfb></usr
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This is pdfTeX, Version 3.1415926-1.40.10 (TeX Live 2009/Debian)
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Loading texinfo [version 2008-04-18.10]: pdf, fonts, page headings, tables,
conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.3 <23 July 2005>
) localization, formatting, and turning on texinfo input format.) (./R-data.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-data.toc
[-1]) [-2] (./R-data.toc) (./R-data.toc) (Acknowledgements)
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 @textbf dataframes2xls| 

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Chapter 1 [1]
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[][][]@smallrm Currently not avail-able from that repos-i-tory but as a source 
pack-age for down-load from
[2]
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[]@textrm `BOMs' (Byte Or-der Marks, [][]@texttt http://en.wikipedia.org/wiki/B
yte_order_mark[][][]@textrm )
[3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13] [14]
Chapter 4 [15] [16] [17] [18]
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[]@textrm Package @textbf RMongo @textrm pro-vides an R in-ter-face to a Java c
lient for `Mon-goDB'

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@textrm ([][]@texttt http://en.wikipedia.org/wiki/MongoDB[][][]@textrm ) data-b
ases, which are queried us-ing
[19]
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[]@textrm On Mac OS X the Ac-tual Tech-nolo-gies ([][]@texttt http://www.actual
technologies.com/product_
[20] [21] Chapter 5 [22]
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[]@textrm Packages @textbf hdf5@textrm , @textbf h5r@textrm , Bio-con-duc-tor's
 @textbf rhdf5@textrm , @textbf RNetCDF@textrm , @textbf ncdf @textrm and @text
bf ncdf4 @textrm on

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@reducedrm CRAN @textrm pro-vide in-ter-faces to @reducedrm NASA@textrm 's HDF5
 (Hi-er-ar-chi-cal Data For-mat, see
Chapter 6 [23] [24] [25] [26] [27] Chapter 7 [28]
Underfull \hbox (badness 2538) in paragraph at lines 2211--2218
@textrm ap-pli-ca-tions to call meth-ods, or op-er-a-tions, in server ob-jects 
run-ning in other
Chapter 8 [29]
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[]@textrm If you do not have Ex-cel, many other pro-grams are able to read such


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@textrm am-ple Gnu-meric ([][]@texttt http://www.gnome.org/projects/gnumeric/[]
[][]@textrm ) and OpenOf-fice
Appendix A [30]
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@textrm B. D. Rip-ley (2001) Con-nec-tions. @texttt \@textit R News@textrm , @t
extbf 1/1@textrm , 16--7. @texttt \[][]http://www.r-project.org/doc/Rnews/Rnews
_
(Function and variable index) [31] (./R-data.vrs [32]) (Concept index) [33]
(./R-data.cps) [34] )
(see the transcript file for additional information)</usr/share/texmf-texlive/f
onts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texmf-texlive/fonts/type1/p
ublic/amsfonts/cm/cmbx12.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfo
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TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-exts.texi
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(./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1]
(Acknowledgements) Chapter 1 [1]
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[][]@texttt http://www.debian.org/doc/debian-policy/ch-controlfields.html[][][]
@textrm : R does not
[4]
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 []@textrm The names of ab-bre-vi-a-tions of free or open source soft-ware (FOS
S, e.g.,

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 @textrm soft-ware (see [][]@texttt http://www.opensource.org/licenses/bsd-lice
nse.php[][][]@textrm ) li-censes
[5] [6]
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 []@textrm Packages that need to be at-tached to suc-cess-fully load the pack-a
ge us-ing
[7] [8]
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@textrm (a saved im-age of R ob-jects: please use suit-able com-pres-sion as su
g-gested by
[9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22]
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 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar
e defined.[]  
[23]
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[][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v
er-sions such as `@smalltt ~/.R/check.Renviron.i386[]@smallrm '[]
[24] [25]
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 @textrm de-fined$@textsy i$ @textrm [Writ-ing R doc-u-men-ta-tion files], page
 $@textsy h$@textrm un-de-fined$@textsy i$[][]@textrm , for in-for-ma-tion

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 @textrm `@texttt tests/Examples/@textttsl pkg@texttt -Ex.Rout.save[]@textrm '[
], the out-put of run-ning the ex-am-ples is

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 @textrm re-made in a copy of the pack-age sources in the `@texttt vign_test[]@
textrm '[] sub-di-rec-tory
[26]
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 []@textbf Multiple sub-architectures: @textrm On sys-tems which sup-port mul-t
i-ple sub- 
[27] [28] [29] [30] [31] [32]
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 []@textrm Read through the PDF man-ual that was pro-duced by @texttt R CMD che
ck[] @textrm at
[33] [34] [35] [36] [37] [38] [39] [40]
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 []@texttt exportMethods(coef, confint, logLik, plot, profile, summary, show, u
pdate, vcov)[] 
[41] [42] [43] [44]
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 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@
euro"[] 
[45] [46]
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[]@textrm The pro-ce-dures make use of @texttt msgfmt[] @textrm and @texttt xge
ttext[] @textrm which are part of @reducedrm GNU

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@textrm bi-na-ries at the @reducedrm GNU @textrm archive mir-rors and pack-aged
 with the @texttt poEdit[] @textrm pack-age
[47] [48] [49] [50]
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 []@texttt msgfmt -c -o share/locale/it/LC_MESSAGES/RGui.mo $R_SRC_HOME/po/RGui
-it.gmo[] 
Chapter 2 [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] [62] [63]
Underfull \hbox (badness 10000) in paragraph at lines 4963--4970
[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[64] [65]
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[]@textrm Occasionally the best con-tent for one out-put for-mat is dif-fer-ent
 from the

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@textrm best con-tent for an-other. For this sit-u-a-tion, the @texttt \if{@tex
tttsl format@texttt }{@textttsl text@texttt }[] @textrm or
[66]
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[]@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu
-ally be used within the @textsl text @textrm part of
[67] [68]
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@textrm command, and this needs to be matched by a suit-able in-vo-ca-tion of t
he

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@texttt \usepackage{inputenc}[] @textrm com-mand. The R util-ity @texttt R CMD 
Rd2pdf[] @textrm looks at the
[69]
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[]@textrm Another is the Eclipse IDE with the Stat-ET plu-gin ([][]@texttt http
://www.walware.de/goto/statet[][][]@textrm ),
Chapter 3 [70] [71] [72] [73] [74]
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[]@textrm Options in-clude us-ing @texttt sprof[] @textrm for a shared ob-ject,
 and @texttt oprofile[] @textrm (see [][]@texttt http://oprofile.sourceforge.ne
t/[][][]@textrm )
[75] [76]
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@textrm and @texttt Shark[] @textrm (see [][]@texttt http://developer.apple.com
/tools/sharkoptimize.html[][][] @textrm and
Chapter 4 [77] [78] [79]
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 []@texttt evaluation nested too deeply: infinite recursion / options(expressio
ns=)?[] 
[80]
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 []@smalltt Message:  Error: no valid set of coefficients has been found: pleas
e supply starting values[] 
[81]
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 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star
t, etastart = etastart,[] 

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[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g. @texttt debug(stats:::predict.Arima)[]@textrm .
[82] [83]
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@textrm plat-form, or Mac OS 10.5/6/7 on `@texttt i386[]@textrm '[] or `@texttt
 x86_64[]@textrm '[] you can use @texttt valgrind[]
[84] [85]
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 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl
assi,[] 

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 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t(
cu)),[] 
[86]
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 []@texttt #5  0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9
698f98,[] 
[87] [88] Chapter 5 [89] [90] [91] [92] [93] [94] [95] [96] [97] [98] [99]
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 []@texttt PKGB_PATH=`echo 'cat(system.file("libs", .Platform$r_arch, package="
packB", mustWork=TRUE))' \[] 

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[100]
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 []@texttt PKGB_PATH=`echo 'library(packB); cat(system.file("libs", package="pa
ckB"))' \[] 

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 []@texttt PKGB_PATH=`echo 'library(packB); cat(system.file("libs", package="pa
ckB"))' \[] 
[101] [102] [103] [104] [105] [106] [107] [108] [109] [110]
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 []    @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL
SE");[] 

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[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[111] [112] [113] [114] [115] [116] [117] [118] [119]
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 []    @texttt PROTECT(gradient = allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 
[120]
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s)) {[] 

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 []        @texttt PROTECT(par = findVar(install(CHAR(STRING_ELT(theta, i))), r
ho));[] 

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 []    @texttt PROTECT(gradient = allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 

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 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 

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ho));[] 
[121]
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alue));[] 
[122] [123]
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xit);[] 
[124]
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NilValue);[] 
[125]
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 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_SYMBOL, CE_ANY} cety
pe_t;[] 
Chapter 6 [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136]
[137] [138] [139] [140] [141] [142]
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[]@textrm The header files which R in-stalls are in di-rec-tory `@textttsl R_IN
CLUDE_DIR[]@textrm '[] (de-fault

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 @textrm definitions for ex-ports from `@texttt R.dll[]@textrm '[] on
[143]
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[]@textrm The graph-ics sys-tems are ex-posed in head-ers `@texttt R_ext/Graphi
csEngine.h[]@textrm '[],
Chapter 7 [144] [145] Chapter 8 [146]
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 []@textrm Setting @texttt LD_LIBRARY_PATH[] @textrm to in-clude the di-rec-to-
ries used in link-ing R. This
[147] [148]
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 []@texttt extern int  (*ptr_R_ReadConsole)(const char *, unsigned char *, int,
 int);[] 
[149] [150] [151]
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 @texttt modules/internet/nanoftp.c[]@textrm '[], `@texttt src/modules/internet
/nanohttp.c[]@textrm '[] and `@texttt src/
[152] [153]
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 []@textrm There is a (D)COM server called @texttt StatConnector[] @textrm writ
-ten by Thomas

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 @textrm Baier avail-able via [][]@texttt http://cran.r-project.org/other-softw
are.html[][][] @textrm or

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 [][]@texttt http://sunsite.univie.ac.at/rcom/[][][]@textrm , which works with 
pack-age @textbf rscproxy @textrm to

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 @textrm Its phi-los-o-phy is dis-cussed in [][]@texttt http://www.omegahat.org
/RDCOMServer/Docs/
[154] [155]
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 @textrm may be avail-able from the Win-dows Reg-istry: it will be in @texttt H
KEY_LOCAL_

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 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra-
tive in-stall and
[156] [157] (Function and variable index) [158] (Concept index) [159] [160] )
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This is pdfTeX, Version 3.1415926-1.40.10 (TeX Live 2009/Debian)
entering extended mode
(/build/buildd/r-base-2.14.1/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2008-04-18.10]: pdf, fonts, page headings, tables,
conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.3 <23 July 2005>
) localization, formatting, and turning on texinfo input format.) (./R-exts.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-exts.toc
[-1] [-2] [-3]) [-4] (./R-exts.toc) (./R-exts.toc) (Acknowledgements)
Chapter 1 [1] [2] [3]
Underfull \hbox (badness 3049) in paragraph at lines 342--354
[][]@texttt http://www.debian.org/doc/debian-policy/ch-controlfields.html[][][]
@textrm : R does not
[4]
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 []@textrm The names of ab-bre-vi-a-tions of free or open source soft-ware (FOS
S, e.g.,

Underfull \hbox (badness 2608) in paragraph at lines 383--400
 @textrm soft-ware (see [][]@texttt http://www.opensource.org/licenses/bsd-lice
nse.php[][][]@textrm ) li-censes
[5] [6]
Underfull \hbox (badness 3118) in paragraph at lines 550--554
 []@textrm Packages that need to be at-tached to suc-cess-fully load the pack-a
ge us-ing
[7] [8]
Underfull \hbox (badness 2057) in paragraph at lines 715--723
@textrm (a saved im-age of R ob-jects: please use suit-able com-pres-sion as su
g-gested by
[9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22]
Overfull \hbox (16.92342pt too wide) in paragraph at lines 1725--1725
 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar
e defined.[]  
[23]
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[][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v
er-sions such as `@smalltt ~/.R/check.Renviron.i386[]@smallrm '[]
[24] [25]
Underfull \hbox (badness 2617) in paragraph at lines 1993--2004
 @textrm re-made in a copy of the pack-age sources in the `@texttt vign_test[]@
textrm '[] sub-di-rec-tory
[26]
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 []@textbf Multiple sub-architectures: @textrm On sys-tems which sup-port mul-t
i-ple sub- 
[27] [28] [29] [30] [31] [32]
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 []@textrm Read through the PDF man-ual that was pro-duced by @texttt R CMD che
ck[] @textrm at
[33] [34] [35] [36] [37] [38] [39] [40]
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 []@texttt exportMethods(coef, confint, logLik, plot, profile, summary, show, u
pdate, vcov)[] 
[41] [42] [43] [44]
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 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@
euro"[] 
[45] [46]
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[]@textrm The pro-ce-dures make use of @texttt msgfmt[] @textrm and @texttt xge
ttext[] @textrm which are part of @reducedrm GNU

Underfull \hbox (badness 4403) in paragraph at lines 3622--3627
@textrm bi-na-ries at the @reducedrm GNU @textrm archive mir-rors and pack-aged
 with the @texttt poEdit[] @textrm pack-age
[47] [48] [49] [50]
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 []@texttt msgfmt -c -o share/locale/it/LC_MESSAGES/RGui.mo $R_SRC_HOME/po/RGui
-it.gmo[] 
Chapter 2 [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] [62] [63]
Underfull \hbox (badness 10000) in paragraph at lines 4963--4970
[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[64] [65]
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[]@textrm Occasionally the best con-tent for one out-put for-mat is dif-fer-ent
 from the

Underfull \hbox (badness 7796) in paragraph at lines 5123--5131
@textrm best con-tent for an-other. For this sit-u-a-tion, the @texttt \if{@tex
tttsl format@texttt }{@textttsl text@texttt }[] @textrm or
[66]
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[]@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu
-ally be used within the @textsl text @textrm part of
[67] [68]
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@textrm command, and this needs to be matched by a suit-able in-vo-ca-tion of t
he

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@texttt \usepackage{inputenc}[] @textrm com-mand. The R util-ity @texttt R CMD 
Rd2pdf[] @textrm looks at the
[69]
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[]@textrm Another is the Eclipse IDE with the Stat-ET plu-gin ([][]@texttt http
://www.walware.de/goto/statet[][][]@textrm ),
Chapter 3 [70] [71] [72] [73] [74]
Overfull \hbox (71.38544pt too wide) in paragraph at lines 5796--5799
[]@textrm Options in-clude us-ing @texttt sprof[] @textrm for a shared ob-ject,
 and @texttt oprofile[] @textrm (see [][]@texttt http://oprofile.sourceforge.ne
t/[][][]@textrm )
[75] [76]
Underfull \hbox (badness 10000) in paragraph at lines 5887--5891
@textrm and @texttt Shark[] @textrm (see [][]@texttt http://developer.apple.com
/tools/sharkoptimize.html[][][] @textrm and
Chapter 4 [77] [78] [79]
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 []@texttt evaluation nested too deeply: infinite recursion / options(expressio
ns=)?[] 
[80]
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 []@smalltt Message:  Error: no valid set of coefficients has been found: pleas
e supply starting values[] 
[81]
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 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star
t, etastart = etastart,[] 

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[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g. @texttt debug(stats:::predict.Arima)[]@textrm .
[82] [83]
Underfull \hbox (badness 3601) in paragraph at lines 6391--6397
@textrm plat-form, or Mac OS 10.5/6/7 on `@texttt i386[]@textrm '[] or `@texttt
 x86_64[]@textrm '[] you can use @texttt valgrind[]
[84] [85]
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 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl
assi,[] 

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 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t(
cu)),[] 
[86]
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 []@texttt #5  0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9
698f98,[] 
[87] [88] Chapter 5 [89] [90] [91] [92] [93] [94] [95] [96] [97] [98] [99]
Overfull \hbox (135.6642pt too wide) in paragraph at lines 7602--7602
 []@texttt PKGB_PATH=`echo 'cat(system.file("libs", .Platform$r_arch, package="
packB", mustWork=TRUE))' \[] 

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 []@texttt PKGB_PATH=`echo 'cat(system.file("libs", .Platform$r_arch, package="
packB", mustWork=TRUE))' \[] 
[100]
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 []@texttt PKGB_PATH=`echo 'library(packB); cat(system.file("libs", package="pa
ckB"))' \[] 

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 []@texttt PKGB_PATH=`echo 'library(packB); cat(system.file("libs", package="pa
ckB"))' \[] 
[101] [102] [103] [104] [105] [106] [107] [108] [109] [110]
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 []    @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL
SE");[] 

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[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[111] [112] [113] [114] [115] [116] [117] [118] [119]
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 []    @texttt PROTECT(gradient = allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 
[120]
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 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 

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 []        @texttt PROTECT(par = findVar(install(CHAR(STRING_ELT(theta, i))), r
ho));[] 

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 []    @texttt PROTECT(gradient = allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 

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 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 

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 []        @texttt PROTECT(par = findVar(install(CHAR(STRING_ELT(theta, i))), r
ho));[] 
[121]
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 []        @texttt cmdexpr = PROTECT(R_ParseVector(cmdSexp, -1, &status, R_NilV
alue));[] 
[122] [123]
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 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one
xit);[] 
[124]
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 []    @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
NilValue);[] 
[125]
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 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_SYMBOL, CE_ANY} cety
pe_t;[] 
Chapter 6 [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136]
[137] [138] [139] [140] [141] [142]
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[]@textrm The header files which R in-stalls are in di-rec-tory `@textttsl R_IN
CLUDE_DIR[]@textrm '[] (de-fault

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 @textrm definitions for ex-ports from `@texttt R.dll[]@textrm '[] on
[143]
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[]@textrm The graph-ics sys-tems are ex-posed in head-ers `@texttt R_ext/Graphi
csEngine.h[]@textrm '[],
Chapter 7 [144] [145] Chapter 8 [146]
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 []@textrm Setting @texttt LD_LIBRARY_PATH[] @textrm to in-clude the di-rec-to-
ries used in link-ing R. This
[147] [148]
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 []@texttt extern int  (*ptr_R_ReadConsole)(const char *, unsigned char *, int,
 int);[] 
[149] [150] [151]
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 @texttt modules/internet/nanoftp.c[]@textrm '[], `@texttt src/modules/internet
/nanohttp.c[]@textrm '[] and `@texttt src/
[152] [153]
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 []@textrm There is a (D)COM server called @texttt StatConnector[] @textrm writ
-ten by Thomas

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 @textrm Baier avail-able via [][]@texttt http://cran.r-project.org/other-softw
are.html[][][] @textrm or

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 [][]@texttt http://sunsite.univie.ac.at/rcom/[][][]@textrm , which works with 
pack-age @textbf rscproxy @textrm to

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 @textrm Its phi-los-o-phy is dis-cussed in [][]@texttt http://www.omegahat.org
/RDCOMServer/Docs/
[154] [155]
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 @textrm may be avail-able from the Win-dows Reg-istry: it will be in @texttt H
KEY_LOCAL_

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 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra-
tive in-stall and
[156] [157] (Function and variable index) [158] (./R-exts.vrs [159] [160])
(Concept index) [161] (./R-exts.cps [162]) [163] )
(see the transcript file for additional information)</usr/share/texmf-texlive/f
onts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texmf-texlive/fonts/type1/p
ublic/amsfonts/cm/cmbx12.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfo
nts/cm/cmmi10.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmmi
12.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmmi7.pfb></usr
/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmmi9.pfb></usr/share/texmf
-texlive/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/texmf-texlive/fon
ts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texmf-texlive/fonts/type1/publ
ic/amsfonts/cm/cmr8.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/c
m/cmr9.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmsl10.pfb>
</usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/sha
re/texmf-texlive/fonts/type1/public/amsfonts/cm/cmss10.pfb></usr/share/texmf-te
xlive/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texmf-texlive/fonts
/type1/public/amsfonts/cm/cmsy7.pfb></usr/share/texmf-texlive/fonts/type1/publi
c/amsfonts/cm/cmti10.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/
cm/cmti9.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmtt10.pf
b></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr/sha
re/texmf-texlive/fonts/type1/public/amsfonts/cm/cmtt9.pfb></usr/share/texmf-tex
live/fonts/type1/public/amsfonts/latxfont/lcircle1.pfb>
Output written on R-exts.pdf (169 pages, 1019063 bytes).
Transcript written on R-exts.log.
This is pdfTeX, Version 3.1415926-1.40.10 (TeX Live 2009/Debian)
entering extended mode
(/build/buildd/r-base-2.14.1/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2008-04-18.10]: pdf, fonts, page headings, tables,
conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.3 <23 July 2005>
) localization, formatting, and turning on texinfo input format.) (./R-exts.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-exts.toc
[-1] [-2] [-3]) [-4] (./R-exts.toc) (./R-exts.toc) (Acknowledgements)
Chapter 1 [1] [2] [3]
Underfull \hbox (badness 3049) in paragraph at lines 342--354
[][]@texttt http://www.debian.org/doc/debian-policy/ch-controlfields.html[][][]
@textrm : R does not
[4]
Underfull \hbox (badness 3826) in paragraph at lines 383--400
 []@textrm The names of ab-bre-vi-a-tions of free or open source soft-ware (FOS
S, e.g.,

Underfull \hbox (badness 2608) in paragraph at lines 383--400
 @textrm soft-ware (see [][]@texttt http://www.opensource.org/licenses/bsd-lice
nse.php[][][]@textrm ) li-censes
[5] [6]
Underfull \hbox (badness 3118) in paragraph at lines 550--554
 []@textrm Packages that need to be at-tached to suc-cess-fully load the pack-a
ge us-ing
[7] [8]
Underfull \hbox (badness 2057) in paragraph at lines 715--723
@textrm (a saved im-age of R ob-jects: please use suit-able com-pres-sion as su
g-gested by
[9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22]
Overfull \hbox (16.92342pt too wide) in paragraph at lines 1725--1725
 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar
e defined.[]  
[23]
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[][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v
er-sions such as `@smalltt ~/.R/check.Renviron.i386[]@smallrm '[]
[24] [25]
Underfull \hbox (badness 2617) in paragraph at lines 1993--2004
 @textrm re-made in a copy of the pack-age sources in the `@texttt vign_test[]@
textrm '[] sub-di-rec-tory
[26]
Underfull \hbox (badness 3291) in paragraph at lines 2043--2055
 []@textbf Multiple sub-architectures: @textrm On sys-tems which sup-port mul-t
i-ple sub- 
[27] [28] [29] [30] [31] [32]
Underfull \hbox (badness 2951) in paragraph at lines 2507--2511
 []@textrm Read through the PDF man-ual that was pro-duced by @texttt R CMD che
ck[] @textrm at
[33] [34] [35] [36] [37] [38] [39] [40]
Overfull \hbox (55.18257pt too wide) in paragraph at lines 3178--3178
 []@texttt exportMethods(coef, confint, logLik, plot, profile, summary, show, u
pdate, vcov)[] 
[41] [42] [43] [44]
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 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@
euro"[] 
[45] [46]
Underfull \hbox (badness 2401) in paragraph at lines 3622--3627
[]@textrm The pro-ce-dures make use of @texttt msgfmt[] @textrm and @texttt xge
ttext[] @textrm which are part of @reducedrm GNU

Underfull \hbox (badness 4403) in paragraph at lines 3622--3627
@textrm bi-na-ries at the @reducedrm GNU @textrm archive mir-rors and pack-aged
 with the @texttt poEdit[] @textrm pack-age
[47] [48] [49] [50]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 3925--3925
 []@texttt msgfmt -c -o share/locale/it/LC_MESSAGES/RGui.mo $R_SRC_HOME/po/RGui
-it.gmo[] 
Chapter 2 [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] [62] [63]
Underfull \hbox (badness 10000) in paragraph at lines 4963--4970
[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[64] [65]
Underfull \hbox (badness 7595) in paragraph at lines 5123--5131
[]@textrm Occasionally the best con-tent for one out-put for-mat is dif-fer-ent
 from the

Underfull \hbox (badness 7796) in paragraph at lines 5123--5131
@textrm best con-tent for an-other. For this sit-u-a-tion, the @texttt \if{@tex
tttsl format@texttt }{@textttsl text@texttt }[] @textrm or
[66]
Underfull \hbox (badness 3503) in paragraph at lines 5140--5146
[]@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu
-ally be used within the @textsl text @textrm part of
[67] [68]
Underfull \hbox (badness 6526) in paragraph at lines 5340--5345
@textrm command, and this needs to be matched by a suit-able in-vo-ca-tion of t
he

Underfull \hbox (badness 4096) in paragraph at lines 5340--5345
@texttt \usepackage{inputenc}[] @textrm com-mand. The R util-ity @texttt R CMD 
Rd2pdf[] @textrm looks at the
[69]
Overfull \hbox (25.21587pt too wide) in paragraph at lines 5415--5418
[]@textrm Another is the Eclipse IDE with the Stat-ET plu-gin ([][]@texttt http
://www.walware.de/goto/statet[][][]@textrm ),
Chapter 3 [70] [71] [72] [73] [74]
Overfull \hbox (71.38544pt too wide) in paragraph at lines 5796--5799
[]@textrm Options in-clude us-ing @texttt sprof[] @textrm for a shared ob-ject,
 and @texttt oprofile[] @textrm (see [][]@texttt http://oprofile.sourceforge.ne
t/[][][]@textrm )
[75] [76]
Underfull \hbox (badness 10000) in paragraph at lines 5887--5891
@textrm and @texttt Shark[] @textrm (see [][]@texttt http://developer.apple.com
/tools/sharkoptimize.html[][][] @textrm and
Chapter 4 [77] [78] [79]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 6093--6093
 []@texttt evaluation nested too deeply: infinite recursion / options(expressio
ns=)?[] 
[80]
Overfull \hbox (25.25755pt too wide) in paragraph at lines 6133--6133
 []@smalltt Message:  Error: no valid set of coefficients has been found: pleas
e supply starting values[] 
[81]
Overfull \hbox (20.53261pt too wide) in paragraph at lines 6237--6237
 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star
t, etastart = etastart,[] 

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[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g. @texttt debug(stats:::predict.Arima)[]@textrm .
[82] [83]
Underfull \hbox (badness 3601) in paragraph at lines 6391--6397
@textrm plat-form, or Mac OS 10.5/6/7 on `@texttt i386[]@textrm '[] or `@texttt
 x86_64[]@textrm '[] you can use @texttt valgrind[]
[84] [85]
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 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl
assi,[] 

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 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t(
cu)),[] 
[86]
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 []@texttt #5  0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9
698f98,[] 
[87] [88] Chapter 5 [89] [90] [91] [92] [93] [94] [95] [96] [97] [98] [99]
Overfull \hbox (135.6642pt too wide) in paragraph at lines 7602--7602
 []@texttt PKGB_PATH=`echo 'cat(system.file("libs", .Platform$r_arch, package="
packB", mustWork=TRUE))' \[] 

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 []@texttt PKGB_PATH=`echo 'cat(system.file("libs", .Platform$r_arch, package="
packB", mustWork=TRUE))' \[] 
[100]
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 []@texttt PKGB_PATH=`echo 'library(packB); cat(system.file("libs", package="pa
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[101] [102] [103] [104] [105] [106] [107] [108] [109] [110]
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 []    @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL
SE");[] 

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[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[111] [112] [113] [114] [115] [116] [117] [118] [119]
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 []    @texttt PROTECT(gradient = allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 
[120]
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s)) {[] 

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 []        @texttt PROTECT(par = findVar(install(CHAR(STRING_ELT(theta, i))), r
ho));[] 

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 []    @texttt PROTECT(gradient = allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 

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s)) {[] 

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ho));[] 
[121]
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alue));[] 
[122] [123]
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xit);[] 
[124]
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 []    @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
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[125]
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 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_SYMBOL, CE_ANY} cety
pe_t;[] 
Chapter 6 [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136]
[137] [138] [139] [140] [141] [142]
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[]@textrm The header files which R in-stalls are in di-rec-tory `@textttsl R_IN
CLUDE_DIR[]@textrm '[] (de-fault

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 @textrm definitions for ex-ports from `@texttt R.dll[]@textrm '[] on
[143]
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[]@textrm The graph-ics sys-tems are ex-posed in head-ers `@texttt R_ext/Graphi
csEngine.h[]@textrm '[],
Chapter 7 [144] [145] Chapter 8 [146]
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 []@textrm Setting @texttt LD_LIBRARY_PATH[] @textrm to in-clude the di-rec-to-
ries used in link-ing R. This
[147] [148]
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 []@texttt extern int  (*ptr_R_ReadConsole)(const char *, unsigned char *, int,
 int);[] 
[149] [150] [151]
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 @texttt modules/internet/nanoftp.c[]@textrm '[], `@texttt src/modules/internet
/nanohttp.c[]@textrm '[] and `@texttt src/
[152] [153]
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 []@textrm There is a (D)COM server called @texttt StatConnector[] @textrm writ
-ten by Thomas

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 @textrm Baier avail-able via [][]@texttt http://cran.r-project.org/other-softw
are.html[][][] @textrm or

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 [][]@texttt http://sunsite.univie.ac.at/rcom/[][][]@textrm , which works with 
pack-age @textbf rscproxy @textrm to

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 @textrm Its phi-los-o-phy is dis-cussed in [][]@texttt http://www.omegahat.org
/RDCOMServer/Docs/
[154] [155]
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 @textrm may be avail-able from the Win-dows Reg-istry: it will be in @texttt H
KEY_LOCAL_

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 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra-
tive in-stall and
[156] [157] (Function and variable index) [158] (./R-exts.vrs [159] [160])
(Concept index) [161] (./R-exts.cps [162]) [163] )
(see the transcript file for additional information)</usr/share/texmf-texlive/f
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12.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmmi7.pfb></usr
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ts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/texmf-texlive/fonts/type1/publ
ic/amsfonts/cm/cmr8.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/c
m/cmr9.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmsl10.pfb>
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TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-intro.texi
This is pdfTeX, Version 3.1415926-1.40.10 (TeX Live 2009/Debian)
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cross references, insertions, (./epsf.tex
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) localization, formatting, and turning on texinfo input format.)
(./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Preface)
Cross reference values unknown; you must run TeX again. Chapter 1 [1] [2]
[3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14]
Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24] [25]
[26] Chapter 6 [27] [28] [29] [30] Chapter 7 [31] [32] [33] Chapter 8 [34]
[35] [36] <./images/hist.pdf> <./images/ecdf.pdf> [37] <./images/QQ.pdf>
[38] <./images/ice.pdf> [39] [40] Chapter 9 [41] [42] Chapter 10 [43] [44]
[45] [46] [47] [48] [49] [50] [51] Chapter 11 [52] [53] [54] [55] [56] [57]
[58] [59] [60] [61] [62] [63] [64] [65] Chapter 12 [66] [67] [68] [69] [70]
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[71] [72] [73] [74] [75] <./images/fig11.pdf> [76] <./images/fig12.pdf>
[77] [78]
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[]@textrm More com-pli-cated ar-range-ments of mul-ti-ple fig-ures can be pro-d
uced by the
[79] [80]
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@textrm and these can be ac-cessed from R via the pack-age @textbf rggobi@textr
m , de-scribed at
Chapter 13 [81]
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[]@textrm Users con-nected to the In-ter-net can use the @texttt install.packag
es()[] @textrm and
[82] Appendix A [83] [84] [85] [86] Appendix B [87] [88] [89] [90] [91]
[92] [93] [94] Appendix C [95] [96] Appendix D [97] Appendix E [98] Appendix F
[99] [100] )
(see the transcript file for additional information)</usr/share/texmf-texlive/f
onts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texmf-texlive/fonts/type1/p
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10.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmex10.pfb></us
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></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/shar
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ive/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texmf-texlive/fonts/t
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txfont/lcircle1.pfb>
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(/build/buildd/r-base-2.14.1/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi
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Loading texinfo [version 2008-04-18.10]: pdf, fonts, page headings, tables,
conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.3 <23 July 2005>
) localization, formatting, and turning on texinfo input format.)
(./R-intro.aux) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex))
(./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}]
[2] (./R-intro.toc [-1] [-2] [-3]) [-4] (./R-intro.toc) (./R-intro.toc)
(Preface) Chapter 1 [1] [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11]
Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20]
[21] [22] [23] [24] [25] [26] Chapter 6 [27] [28] [29] [30] Chapter 7 [31]
[32] [33] Chapter 8 [34] [35] [36] <./images/hist.pdf> <./images/ecdf.pdf>
[37] <./images/QQ.pdf> [38] <./images/ice.pdf> [39] [40] Chapter 9 [41]
[42] Chapter 10 [43] [44] [45] [46] [47] [48] [49] [50] [51] Chapter 11
[52] [53] [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65]
Chapter 12 [66] [67] [68] [69] [70]
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[71] [72] [73] [74] [75] <./images/fig11.pdf> [76] <./images/fig12.pdf>
[77] [78]
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[]@textrm More com-pli-cated ar-range-ments of mul-ti-ple fig-ures can be pro-d
uced by the
[79] [80]
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@textrm and these can be ac-cessed from R via the pack-age @textbf rggobi@textr
m , de-scribed at
Chapter 13 [81]
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[]@textrm Users con-nected to the In-ter-net can use the @texttt install.packag
es()[] @textrm and
[82] Appendix A [83] [84] [85] [86] Appendix B [87] [88] [89] [90] [91]
[92] [93] [94] Appendix C [95] [96] Appendix D [97] (./R-intro.vrs [98]
[99]) Appendix E [100] (./R-intro.cps [101]) Appendix F [102] [103] )
(see the transcript file for additional information)</usr/share/texmf-texlive/f
onts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texmf-texlive/fonts/type1/p
ublic/amsfonts/cm/cmbx12.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfo
nts/cm/cmbx7.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmcsc
10.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmex10.pfb></us
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fonts/type1/public/amsfonts/cm/cmmi7.pfb></usr/share/texmf-texlive/fonts/type1/
public/amsfonts/cm/cmmi9.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfo
nts/cm/cmr10.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmr7.
pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/sha
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(/build/buildd/r-base-2.14.1/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi
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Loading texinfo [version 2008-04-18.10]: pdf, fonts, page headings, tables,
conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.3 <23 July 2005>
) localization, formatting, and turning on texinfo input format.)
(./R-intro.aux) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex))
(./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}]
[2] (./R-intro.toc [-1] [-2] [-3]) [-4] (./R-intro.toc) (./R-intro.toc)
(Preface) Chapter 1 [1] [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11]
Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20]
[21] [22] [23] [24] [25] [26] Chapter 6 [27] [28] [29] [30] Chapter 7 [31]
[32] [33] Chapter 8 [34] [35] [36] <./images/hist.pdf> <./images/ecdf.pdf>
[37] <./images/QQ.pdf> [38] <./images/ice.pdf> [39] [40] Chapter 9 [41]
[42] Chapter 10 [43] [44] [45] [46] [47] [48] [49] [50] [51] Chapter 11
[52] [53] [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65]
Chapter 12 [66] [67] [68] [69] [70]
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[71] [72] [73] [74] [75] <./images/fig11.pdf> [76] <./images/fig12.pdf>
[77] [78]
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[]@textrm More com-pli-cated ar-range-ments of mul-ti-ple fig-ures can be pro-d
uced by the
[79] [80]
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@textrm and these can be ac-cessed from R via the pack-age @textbf rggobi@textr
m , de-scribed at
Chapter 13 [81]
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[]@textrm Users con-nected to the In-ter-net can use the @texttt install.packag
es()[] @textrm and
[82] Appendix A [83] [84] [85] [86] Appendix B [87] [88] [89] [90] [91]
[92] [93] [94] Appendix C [95] [96] Appendix D [97] (./R-intro.vrs [98]
[99]) Appendix E [100] (./R-intro.cps [101]) Appendix F [102] [103] )
(see the transcript file for additional information)</usr/share/texmf-texlive/f
onts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texmf-texlive/fonts/type1/p
ublic/amsfonts/cm/cmbx12.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfo
nts/cm/cmbx7.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmcsc
10.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmex10.pfb></us
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[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1
[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13]
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@textrm level by @texttt saveRDS[]@textrm /@texttt readRDS[] @textrm (and their
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[14] [15] [16] [17] [18] [19] [20] [21] [22] [23]
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[]@textrm Lazy-load data-bases are cre-ated by the code in `@texttt src/library
/tools/R/makeLazyLoad.R[]@textrm '[]:
[24] Chapter 2 [25] [26] [27] [28]
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[]@textrm Those prim-i-tives which are in @texttt .GenericArgsEnv[] @textrm are
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Chapter 3 [29] [30] Chapter 4 [31] [32] Chapter 5 [33] [34] Chapter 6 [35]
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[]@textrm Some notes on the changes for 1.4.0 can be found at [][]@texttt http:
//www.stat.auckland.ac.nz/

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@texttt ~paul/R/basegraph.html[][][] @textrm and [][]@texttt http://www.stat.au
ckland.ac.nz/~paul/R/
[36] [37] [38] [39] [40] [41] [42]
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[]@textrm Users may use @texttt grDevices::setGraphicsEventEnv[] @textrm to set
 the @texttt eventEnv[] @textrm en-

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@textrm vi-ron-ment in the de-vice driver to hold event han-dlers. When the use
r calls
[43] [44] [45]
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[]@textrm The base sys-tem state is con-tained in @texttt baseSystemState[] @te
xtrm struc-ture de-fined in
[46] Chapter 7 [47] [48] [49] [50] Chapter 8 [51]
Underfull \hbox (badness 2088) in paragraph at lines 3715--3724
 @textsl Pro-gram-ming En-vi-ron-ment @textrm by Brian W. Kernighan & Rob Pike.
 Note in
[52] Chapter 9 [53] Chapter 10 [54] Chapter 11 [55] [56]
(Function and variable index) [57] (Concept index) [58] [59] )
(see the transcript file for additional information)</usr/share/texmf-texlive/f
onts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texmf-texlive/fonts/type1/p
ublic/amsfonts/cm/cmbx12.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfo
nts/cm/cmr10.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmr7.
pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/sha
re/texmf-texlive/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texmf-te
xlive/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texmf-texlive/fon
ts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texmf-texlive/fonts/type1/pu
blic/amsfonts/cm/cmti10.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfon
ts/cm/cmtt10.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmtt1
2.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-ints.pdf (62 pages, 391423 bytes).
Transcript written on R-ints.log.
This is pdfTeX, Version 3.1415926-1.40.10 (TeX Live 2009/Debian)
entering extended mode
(/build/buildd/r-base-2.14.1/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi
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Loading texinfo [version 2008-04-18.10]: pdf, fonts, page headings, tables,
conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.3 <23 July 2005>
) localization, formatting, and turning on texinfo input format.) (./R-ints.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-ints.toc
[-1]) [-2] (./R-ints.toc) (./R-ints.toc) Chapter 1 [1] [2] [3] [4] [5] [6]
[7] [8] [9] [10] [11] [12] [13]
Underfull \hbox (badness 4859) in paragraph at lines 1133--1142
@textrm level by @texttt saveRDS[]@textrm /@texttt readRDS[] @textrm (and their
 ear-lier `in-ter-nal' dot-name ver-sions) and
[14] [15] [16] [17] [18] [19] [20] [21] [22] [23]
Overfull \hbox (5.29526pt too wide) in paragraph at lines 1938--1943
[]@textrm Lazy-load data-bases are cre-ated by the code in `@texttt src/library
/tools/R/makeLazyLoad.R[]@textrm '[]:
[24] Chapter 2 [25] [26] [27] [28]
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[]@textrm Those prim-i-tives which are in @texttt .GenericArgsEnv[] @textrm are
 checked (via `@texttt tests/primitives.R[]@textrm '[])
Chapter 3 [29] [30] Chapter 4 [31] [32] Chapter 5 [33] [34] Chapter 6 [35]
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[]@textrm Some notes on the changes for 1.4.0 can be found at [][]@texttt http:
//www.stat.auckland.ac.nz/

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@texttt ~paul/R/basegraph.html[][][] @textrm and [][]@texttt http://www.stat.au
ckland.ac.nz/~paul/R/
[36] [37] [38] [39] [40] [41] [42]
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[]@textrm Users may use @texttt grDevices::setGraphicsEventEnv[] @textrm to set
 the @texttt eventEnv[] @textrm en-

Underfull \hbox (badness 2556) in paragraph at lines 3222--3238
@textrm vi-ron-ment in the de-vice driver to hold event han-dlers. When the use
r calls
[43] [44] [45]
Underfull \hbox (badness 2245) in paragraph at lines 3449--3453
[]@textrm The base sys-tem state is con-tained in @texttt baseSystemState[] @te
xtrm struc-ture de-fined in
[46] Chapter 7 [47] [48] [49] [50] Chapter 8 [51]
Underfull \hbox (badness 2088) in paragraph at lines 3715--3724
 @textsl Pro-gram-ming En-vi-ron-ment @textrm by Brian W. Kernighan & Rob Pike.
 Note in
[52] Chapter 9 [53] Chapter 10 [54] Chapter 11 [55] [56]
(Function and variable index) [57] (./R-ints.vrs [58]) (Concept index) [59]
(./R-ints.cps) [60] )
(see the transcript file for additional information)</usr/share/texmf-texlive/f
onts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texmf-texlive/fonts/type1/p
ublic/amsfonts/cm/cmbx12.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfo
nts/cm/cmmi10.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmmi
12.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmmi9.pfb></usr
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s/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texmf-texlive/fonts/type1/publi
c/amsfonts/cm/cmsl10.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/
cm/cmsltt10.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmsy10
.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/
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nts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-ints.pdf (64 pages, 482096 bytes).
Transcript written on R-ints.log.
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entering extended mode
(/build/buildd/r-base-2.14.1/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi
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Loading texinfo [version 2008-04-18.10]: pdf, fonts, page headings, tables,
conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.3 <23 July 2005>
) localization, formatting, and turning on texinfo input format.) (./R-ints.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-ints.toc
[-1]) [-2] (./R-ints.toc) (./R-ints.toc) Chapter 1 [1] [2] [3] [4] [5] [6]
[7] [8] [9] [10] [11] [12] [13]
Underfull \hbox (badness 4859) in paragraph at lines 1133--1142
@textrm level by @texttt saveRDS[]@textrm /@texttt readRDS[] @textrm (and their
 ear-lier `in-ter-nal' dot-name ver-sions) and
[14] [15] [16] [17] [18] [19] [20] [21] [22] [23]
Overfull \hbox (5.29526pt too wide) in paragraph at lines 1938--1943
[]@textrm Lazy-load data-bases are cre-ated by the code in `@texttt src/library
/tools/R/makeLazyLoad.R[]@textrm '[]:
[24] Chapter 2 [25] [26] [27] [28]
Overfull \hbox (0.64153pt too wide) in paragraph at lines 2282--2289
[]@textrm Those prim-i-tives which are in @texttt .GenericArgsEnv[] @textrm are
 checked (via `@texttt tests/primitives.R[]@textrm '[])
Chapter 3 [29] [30] Chapter 4 [31] [32] Chapter 5 [33] [34] Chapter 6 [35]
Overfull \hbox (0.6417pt too wide) in paragraph at lines 2669--2672
[]@textrm Some notes on the changes for 1.4.0 can be found at [][]@texttt http:
//www.stat.auckland.ac.nz/

Underfull \hbox (badness 10000) in paragraph at lines 2669--2672
@texttt ~paul/R/basegraph.html[][][] @textrm and [][]@texttt http://www.stat.au
ckland.ac.nz/~paul/R/
[36] [37] [38] [39] [40] [41] [42]
Underfull \hbox (badness 5832) in paragraph at lines 3222--3238
[]@textrm Users may use @texttt grDevices::setGraphicsEventEnv[] @textrm to set
 the @texttt eventEnv[] @textrm en-

Underfull \hbox (badness 2556) in paragraph at lines 3222--3238
@textrm vi-ron-ment in the de-vice driver to hold event han-dlers. When the use
r calls
[43] [44] [45]
Underfull \hbox (badness 2245) in paragraph at lines 3449--3453
[]@textrm The base sys-tem state is con-tained in @texttt baseSystemState[] @te
xtrm struc-ture de-fined in
[46] Chapter 7 [47] [48] [49] [50] Chapter 8 [51]
Underfull \hbox (badness 2088) in paragraph at lines 3715--3724
 @textsl Pro-gram-ming En-vi-ron-ment @textrm by Brian W. Kernighan & Rob Pike.
 Note in
[52] Chapter 9 [53] Chapter 10 [54] Chapter 11 [55] [56]
(Function and variable index) [57] (./R-ints.vrs [58]) (Concept index) [59]
(./R-ints.cps) [60] )
(see the transcript file for additional information)</usr/share/texmf-texlive/f
onts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texmf-texlive/fonts/type1/p
ublic/amsfonts/cm/cmbx12.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfo
nts/cm/cmmi10.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmmi
12.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmmi9.pfb></usr
/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/texmf
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s/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texmf-texlive/fonts/type1/publi
c/amsfonts/cm/cmsl10.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/
cm/cmsltt10.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmsy10
.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/
share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texmf
-texlive/fonts/type1/public/amsfonts/cm/cmtt12.pfb></usr/share/texmf-texlive/fo
nts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-ints.pdf (64 pages, 482096 bytes).
Transcript written on R-ints.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-lang.texi
This is pdfTeX, Version 3.1415926-1.40.10 (TeX Live 2009/Debian)
entering extended mode
(/build/buildd/r-base-2.14.1/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2008-04-18.10]: pdf, fonts, page headings, tables,
conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.3 <23 July 2005>
) localization, formatting, and turning on texinfo input format.)
(./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1
Chapter 2 [1] [2] Cross reference values unknown; you must run TeX again.
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 @textbf storage.mode| 
[3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16]
[17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] [28]
Chapter 5 [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39]
[40] [41] [42] Chapter 7 [43] [44] Chapter 8 [45] [46] Chapter 9 [47] [48]
[49] Chapter 10 [50] [51] [52]
Underfull \hbox (badness 3623) in paragraph at lines 4326--4328
[]@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be
 found by
[53] [54] [55] [56] [57] (Function and Variable Index) [58] (Concept Index)
[59] Appendix A [60] [61] )
(see the transcript file for additional information)</usr/share/texmf-texlive/f
onts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texmf-texlive/fonts/type1/p
ublic/amsfonts/cm/cmbx12.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfo
nts/cm/cmmi10.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmr1
0.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/s
hare/texmf-texlive/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texmf-te
xlive/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texmf-texlive/fonts
/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texmf-texlive/fonts/type1/pu
blic/amsfonts/cm/cmsy10.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfon
ts/cm/cmsy9.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmti10
.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/
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Output written on R-lang.pdf (64 pages, 377349 bytes).
Transcript written on R-lang.log.
This is pdfTeX, Version 3.1415926-1.40.10 (TeX Live 2009/Debian)
entering extended mode
(/build/buildd/r-base-2.14.1/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi
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Loading texinfo [version 2008-04-18.10]: pdf, fonts, page headings, tables,
conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.3 <23 July 2005>
) localization, formatting, and turning on texinfo input format.) (./R-lang.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-lang.toc
[-1] [-2]) [-3] (./R-lang.toc) (./R-lang.toc) Chapter 1 Chapter 2 [1] [2]
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 @textbf storage.mode| 
[3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16]
[17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] [28]
Chapter 5 [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39]
[40] [41] [42] Chapter 7 [43] [44] Chapter 8 [45] [46] Chapter 9 [47] [48]
[49] Chapter 10 [50] [51] [52]
Underfull \hbox (badness 3623) in paragraph at lines 4326--4328
[]@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be
 found by
[53] [54] [55] [56] [57] (Function and Variable Index) [58] (./R-lang.vrs
[59]) (Concept Index) [60] (./R-lang.cps) Appendix A [61] [62] )
(see the transcript file for additional information)</usr/share/texmf-texlive/f
onts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texmf-texlive/fonts/type1/p
ublic/amsfonts/cm/cmbx12.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfo
nts/cm/cmmi10.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmmi
12.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmmi9.pfb></usr
/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/texmf
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s/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texmf-texlive/fonts/type1/publi
c/amsfonts/cm/cmsl10.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/
cm/cmsltt10.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmsy10
.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/
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Output written on R-lang.pdf (67 pages, 499453 bytes).
Transcript written on R-lang.log.
This is pdfTeX, Version 3.1415926-1.40.10 (TeX Live 2009/Debian)
entering extended mode
(/build/buildd/r-base-2.14.1/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2008-04-18.10]: pdf, fonts, page headings, tables,
conditionals, indexing, sectioning, toc, environments, defuns, macros,
cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.3 <23 July 2005>
) localization, formatting, and turning on texinfo input format.) (./R-lang.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-lang.toc
[-1] [-2]) [-3] (./R-lang.toc) (./R-lang.toc) Chapter 1 Chapter 2 [1] [2]
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 @textbf storage.mode| 
[3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16]
[17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] [28]
Chapter 5 [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39]
[40] [41] [42] Chapter 7 [43] [44] Chapter 8 [45] [46] Chapter 9 [47] [48]
[49] Chapter 10 [50] [51] [52]
Underfull \hbox (badness 3623) in paragraph at lines 4326--4328
[]@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be
 found by
[53] [54] [55] [56] [57] (Function and Variable Index) [58] (./R-lang.vrs
[59]) (Concept Index) [60] (./R-lang.cps) Appendix A [61] [62] )
(see the transcript file for additional information)</usr/share/texmf-texlive/f
onts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texmf-texlive/fonts/type1/p
ublic/amsfonts/cm/cmbx12.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfo
nts/cm/cmmi10.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmmi
12.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmmi9.pfb></usr
/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmr10.pfb></usr/share/texmf
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cm/cmsltt10.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmsy10
.pfb></usr/share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/
share/texmf-texlive/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texmf
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Output written on R-lang.pdf (67 pages, 499453 bytes).
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make[3]: Leaving directory `/build/buildd/r-base-2.14.1/doc/manual'
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make[1]: Entering directory `/build/buildd/r-base-2.14.1'
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mkdir -p -- /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/R/doc
mkdir -p -- /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/man/man1
make[3]: Entering directory `/build/buildd/r-base-2.14.1/doc/html'
installing doc/html ...
mkdir -p -- /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/R/doc/html
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/doc/html'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/doc/manual'
installing doc/manual ...
mkdir -p -- /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/R/doc/manual
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/doc/manual'
make[2]: Leaving directory `/build/buildd/r-base-2.14.1/doc'
make[2]: Entering directory `/build/buildd/r-base-2.14.1/etc'
mkdir -p -- /build/buildd/r-base-2.14.1/debian/r-base-core/usr/lib/R/etc
installing etc ...
make[2]: Leaving directory `/build/buildd/r-base-2.14.1/etc'
make[2]: Entering directory `/build/buildd/r-base-2.14.1/share'
installing share ...
mkdir -p -- /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/R/share
mkdir -p -- /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/R/share/R
mkdir -p -- /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/R/share/encodings
mkdir -p -- /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/R/share/java
mkdir -p -- /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/R/share/licenses
mkdir -p -- /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/R/share/make
mkdir -p -- /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/R/share/sh
mkdir -p -- /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/R/share/texmf
mkdir -p -- /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/R/share/texmf/bibtex/bib
mkdir -p -- /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/R/share/texmf/bibtex/bst
mkdir -p -- /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/R/share/texmf/tex/latex
make[2]: Leaving directory `/build/buildd/r-base-2.14.1/share'
make[2]: Entering directory `/build/buildd/r-base-2.14.1/src'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/src/scripts'
mkdir -p -- /build/buildd/r-base-2.14.1/debian/r-base-core/usr/lib/R/bin
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/src/scripts'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/src/include'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/include/R_ext'
mkdir -p -- /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/R/include/R_ext
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/include/R_ext'
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/src/include'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/src/extra'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/extra/blas'
make[4]: Nothing to be done for `install'.
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/extra/blas'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/extra/bzip2'
make[4]: Nothing to be done for `install'.
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/extra/bzip2'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/extra/pcre'
make[4]: Nothing to be done for `install'.
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/extra/pcre'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/extra/tre'
make[4]: Nothing to be done for `install'.
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/extra/tre'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/extra/xdr'
make[4]: Nothing to be done for `install'.
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/extra/xdr'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/extra/xz'
make[4]: Nothing to be done for `install'.
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/extra/xz'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/extra/zlib'
make[4]: Nothing to be done for `install'.
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/extra/zlib'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/extra/intl'
make[4]: Nothing to be done for `install'.
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/extra/intl'
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/src/extra'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/src/appl'
make[3]: Nothing to be done for `install'.
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/src/appl'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/src/nmath'
make[3]: Nothing to be done for `install'.
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/src/nmath'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -DR_HOME='"/usr/lib/R"' -o Rscript \
	  ./Rscript.c
mkdir -p -- /build/buildd/r-base-2.14.1/debian/r-base-core/usr/lib/pkgconfig
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/src/unix'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/src/main'
mkdir -p -- /build/buildd/r-base-2.14.1/debian/r-base-core/usr/lib/R/bin/exec
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/main'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/main'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/main'
mkdir -p -- /build/buildd/r-base-2.14.1/debian/r-base-core/usr/lib/R/lib
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/main'
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/src/main'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/src/modules'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/internet'
mkdir -p -- /build/buildd/r-base-2.14.1/debian/r-base-core/usr/lib/R/modules
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/internet'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/lapack'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/lapack'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/vfonts'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/vfonts'
make[4]: Entering directory `/build/buildd/r-base-2.14.1/src/modules/X11'
make[4]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules/X11'
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/src/modules'
make[3]: Entering directory `/build/buildd/r-base-2.14.1/src/library'
mkdir -p -- /build/buildd/r-base-2.14.1/debian/r-base-core/usr/lib/R/library
installing packages ...
  building HTML index ...
make[3]: Leaving directory `/build/buildd/r-base-2.14.1/src/library'
make[2]: Leaving directory `/build/buildd/r-base-2.14.1/src'
make[2]: Entering directory `/build/buildd/r-base-2.14.1/tests'
make[2]: Nothing to be done for `install'.
make[2]: Leaving directory `/build/buildd/r-base-2.14.1/tests'
make[2]: Entering directory `/build/buildd/r-base-2.14.1/po'
installing translations:
mkdir -p -- /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/R/share/locale/en/LC_MESSAGES
  en
mkdir -p -- /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/R/share/locale/en_GB/LC_MESSAGES
  en_GB
mkdir -p -- /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/R/share/locale/es/LC_MESSAGES
  es
mkdir -p -- /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/R/share/locale/fr/LC_MESSAGES
  fr
mkdir -p -- /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/R/share/locale/de/LC_MESSAGES
  de
mkdir -p -- /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/R/share/locale/it/LC_MESSAGES
  it
mkdir -p -- /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/R/share/locale/ja/LC_MESSAGES
  ja
mkdir -p -- /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/R/share/locale/ko/LC_MESSAGES
  ko
mkdir -p -- /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/R/share/locale/nn/LC_MESSAGES
  nn
mkdir -p -- /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/R/share/locale/pt_BR/LC_MESSAGES
  pt_BR
mkdir -p -- /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/R/share/locale/ru/LC_MESSAGES
  ru
mkdir -p -- /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/R/share/locale/tr/LC_MESSAGES
  tr
mkdir -p -- /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/R/share/locale/zh_CN/LC_MESSAGES
  zh_CN
mkdir -p -- /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/R/share/locale/zh_TW/LC_MESSAGES
  zh_TW
mkdir -p -- /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/R/share/locale/en@quot/LC_MESSAGES
  en@quot
make[2]: Leaving directory `/build/buildd/r-base-2.14.1/po'
make[1]: Leaving directory `/build/buildd/r-base-2.14.1'
(cd src/unix; 						\
		rm -vf Rscript /build/buildd/r-base-2.14.1/debian/r-base-core/usr/bin/Rscript;	\
		/usr/bin/make	CFLAGS="-O3 -pipe  -g -D_REENTRANT"		\
			CXXFLAGS="-O3 -pipe  -g -D_REENTRANT"	\
			FFLAGS="-O3 -pipe  -g -D_REENTRANT"	\
			CC="gcc -std=gnu99"				\
			CXX=g++			\
			F77=gfortran			\
			RHOME=/usr/lib/R			\
			DESTDIR=/build/buildd/r-base-2.14.1/debian/r-base-core			\
			install-Rscript )
removed `Rscript'
removed `/build/buildd/r-base-2.14.1/debian/r-base-core/usr/bin/Rscript'
make[1]: Entering directory `/build/buildd/r-base-2.14.1/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -O3 -pipe  -g -D_REENTRANT -DR_HOME='"/usr/lib/R"' -o Rscript \
	  ./Rscript.c
make[1]: Leaving directory `/build/buildd/r-base-2.14.1/src/unix'
#ls -ltr /build/buildd/r-base-2.14.1/debian/r-base-core/usr/bin/
#strings src/unix/Rscript					
cp -vax src/unix/Rscript /build/buildd/r-base-2.14.1/debian/r-base-core/usr/bin/
`src/unix/Rscript' -> `/build/buildd/r-base-2.14.1/debian/r-base-core/usr/bin/Rscript'
#ls -ltr /build/buildd/r-base-2.14.1/debian/r-base-core/usr/bin/
#strings /build/buildd/r-base-2.14.1/debian/r-base-core/usr/bin/Rscript
(cd src/nmath/standalone;				\
		/usr/bin/make DESTDIR=/build/buildd/r-base-2.14.1/debian/r-base-core install )
make[1]: Entering directory `/build/buildd/r-base-2.14.1/src/nmath/standalone'
make[2]: Entering directory `/build/buildd/r-base-2.14.1/src/include'
make[2]: `Rmath.h' is up to date.
make[2]: Leaving directory `/build/buildd/r-base-2.14.1/src/include'
/build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/R/include/Rmath.h is unchanged
make[1]: Leaving directory `/build/buildd/r-base-2.14.1/src/nmath/standalone'
chmod a+x	/build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/R/share/sh/echo.sh		
rm -v	/build/buildd/r-base-2.14.1/debian/r-base-core/usr/lib/R/COPYING  		
removed `/build/buildd/r-base-2.14.1/debian/r-base-core/usr/lib/R/COPYING'
(cd /build/buildd/r-base-2.14.1/debian/r-base-core/usr/lib/R/; \
		ln -s ../../share/common-licenses/GPL-2 COPYING)
rm -v	/build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/R/doc/COPYING  	
removed `/build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/R/doc/COPYING'
(cd /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/R/doc; \
		ln -s ../../../share/common-licenses/GPL-2 COPYING)
# edd 03 Oct 2006  use link into /usr/share/, not /usr/lib/
(cd /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/texmf/tex/latex && 	\
	    ln -s ../../../R/share/texmf R)
dh_movefiles	--sourcedir=debian/r-base-core -pr-doc-html
dh_movefiles	--sourcedir=debian/r-base-core -pr-base-html
dh_movefiles	--sourcedir=debian/r-base-core -pr-base-latex
make		prefix=/build/buildd/r-base-2.14.1/debian/r-base-core/usr			\
			rdocdir=/build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/R/doc	\
			install-pdf
make[1]: Entering directory `/build/buildd/r-base-2.14.1'
make[2]: Entering directory `/build/buildd/r-base-2.14.1/doc/manual'
installing R manuals in PDF format ...
make[2]: Leaving directory `/build/buildd/r-base-2.14.1/doc/manual'
make[1]: Leaving directory `/build/buildd/r-base-2.14.1'
make		prefix=/build/buildd/r-base-2.14.1/debian/r-base-core/usr  \
			infodir=/build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/info	install-info
make[1]: Entering directory `/build/buildd/r-base-2.14.1'
make[2]: Entering directory `/build/buildd/r-base-2.14.1/doc/manual'
mkdir -p -- /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/info
/usr/bin/install -c -m 644 "./dir" "/build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/info"
installing R info pages ...
updating '/build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/info/dir' ...
install-info: warning: don't call programs like install-info with an absolute path,
install-info: warning: /usr/sbin/install-info provided by dpkg is deprecated and will go away soon;
install-info: warning: its replacement lives in /usr/bin/.
install-info: warning: nothing done since /usr/bin/install-info doesn't exist,
install-info: warning: you might want to install an info-browser package.
install-info: warning: don't call programs like install-info with an absolute path,
install-info: warning: /usr/sbin/install-info provided by dpkg is deprecated and will go away soon;
install-info: warning: its replacement lives in /usr/bin/.
install-info: warning: nothing done since /usr/bin/install-info doesn't exist,
install-info: warning: you might want to install an info-browser package.
install-info: warning: don't call programs like install-info with an absolute path,
install-info: warning: /usr/sbin/install-info provided by dpkg is deprecated and will go away soon;
install-info: warning: its replacement lives in /usr/bin/.
install-info: warning: nothing done since /usr/bin/install-info doesn't exist,
install-info: warning: you might want to install an info-browser package.
install-info: warning: don't call programs like install-info with an absolute path,
install-info: warning: /usr/sbin/install-info provided by dpkg is deprecated and will go away soon;
install-info: warning: its replacement lives in /usr/bin/.
install-info: warning: nothing done since /usr/bin/install-info doesn't exist,
install-info: warning: you might want to install an info-browser package.
install-info: warning: don't call programs like install-info with an absolute path,
install-info: warning: /usr/sbin/install-info provided by dpkg is deprecated and will go away soon;
install-info: warning: its replacement lives in /usr/bin/.
install-info: warning: nothing done since /usr/bin/install-info doesn't exist,
install-info: warning: you might want to install an info-browser package.
install-info: warning: don't call programs like install-info with an absolute path,
install-info: warning: /usr/sbin/install-info provided by dpkg is deprecated and will go away soon;
install-info: warning: its replacement lives in /usr/bin/.
install-info: warning: nothing done since /usr/bin/install-info doesn't exist,
install-info: warning: you might want to install an info-browser package.
install-info: warning: don't call programs like install-info with an absolute path,
install-info: warning: /usr/sbin/install-info provided by dpkg is deprecated and will go away soon;
install-info: warning: its replacement lives in /usr/bin/.
install-info: warning: nothing done since /usr/bin/install-info doesn't exist,
install-info: warning: you might want to install an info-browser package.
make[2]: Leaving directory `/build/buildd/r-base-2.14.1/doc/manual'
make[1]: Leaving directory `/build/buildd/r-base-2.14.1'
dh_movefiles	--sourcedir=debian/r-base-core -pr-doc-pdf
dh_movefiles	--sourcedir=debian/r-base-core -pr-doc-html
touch install-indep-stamp
gunzip -9v /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/info/*.gz
/build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/info/R-FAQ.info.gz:	 66.9% -- replaced with /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/info/R-FAQ.info
/build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/info/R-admin.info.gz:	 68.2% -- replaced with /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/info/R-admin.info
/build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/info/R-data.info.gz:	 69.8% -- replaced with /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/info/R-data.info
/build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/info/R-exts.info-1.gz:	 66.7% -- replaced with /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/info/R-exts.info-1
/build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/info/R-exts.info-2.gz:	 72.1% -- replaced with /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/info/R-exts.info-2
/build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/info/R-exts.info.gz:	 64.7% -- replaced with /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/info/R-exts.info
/build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/info/R-intro.info.gz:	 70.0% -- replaced with /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/info/R-intro.info
/build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/info/R-ints.info.gz:	 67.2% -- replaced with /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/info/R-ints.info
/build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/info/R-lang.info.gz:	 71.2% -- replaced with /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/info/R-lang.info
dh_movefiles	--sourcedir=debian/r-base-core -pr-doc-info
rm -vf	/build/buildd/r-base-2.14.1/debian/r-doc-info/usr/share/info/dir		\
		/build/buildd/r-base-2.14.1/debian/r-doc-info/usr/share/info/dir.old	
removed `/build/buildd/r-base-2.14.1/debian/r-doc-info/usr/share/info/dir'
dh_installdirs -pr-mathlib usr/include usr/lib \
					usr/share/lintian/overrides \
					usr/lib/pkgconfig
dh_movefiles	--sourcedir=debian/r-base-core -pr-mathlib
(cd /build/buildd/r-base-2.14.1/debian/r-mathlib/usr/lib; \
			ls -l ; \
			mv -v  libRmath.so 	     libRmath.so.1.0.0; \
			ln -sv libRmath.so.1.0.0 libRmath.so.1; \
			ln -sv libRmath.so.1  libRmath.so)
total 1604
-rw-rw-r-- 1 root root 1031048 Jan  1 08:52 libRmath.a
-rwxrwxr-x 1 root root  597342 Jan  1 08:52 libRmath.so
drwxr-xr-x 2 root root    4096 Jan  1 08:52 pkgconfig
`libRmath.so' -> `libRmath.so.1.0.0'
`libRmath.so.1' -> `libRmath.so.1.0.0'
`libRmath.so' -> `libRmath.so.1'
install -m 0644 src/include/Rmath.h			\
			/build/buildd/r-base-2.14.1/debian/r-mathlib/usr/include
install -m 0644 debian/Rprofile.site /build/buildd/r-base-2.14.1/debian/r-base-core/etc/R
install -m 0644 debian/Renviron.site /build/buildd/r-base-2.14.1/debian/r-base-core/etc/R
(cd /build/buildd/r-base-2.14.1/debian/r-base-core/usr/lib/R/etc; \
		cat /build/buildd/r-base-2.14.1/debian/Renviron-R_LIBS.patch | patch --verbose;	\
		mv Makeconf repositories ldpaths ../../../../etc/R/;	\
		mv Renviron Renviron.ucf;				\
		ln -s  /etc/R/Makeconf	.;				\
		ln -s  /etc/R/Renviron	.;				\
		ln -s  /etc/R/Renviron.site .;				\
		ln -s  /etc/R/Rprofile.site .;				\
		ln -s  /etc/R/ldpaths   .;                              \
		ln -s  /etc/R/repositories .				)
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|--- Renviron.orig	2003-04-04 06:52:22.000000000 -0500
|+++ Renviron	2003-04-04 06:49:05.000000000 -0500
--------------------------
Patching file Renviron using Plan A...
Hunk #1 succeeded at 44 with fuzz 2 (offset 11 lines).
done
(cd /build/buildd/r-base-2.14.1/debian/r-base-core/usr/lib/R/bin; \
		cat /build/buildd/r-base-2.14.1/debian/javareconf.patch | patch --verbose )
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|--- javareconf.orig	2008-08-25 06:26:13.000000000 -0500
|+++ javareconf	2008-08-25 06:30:49.000000000 -0500
--------------------------
Patching file javareconf using Plan A...
Hunk #1 succeeded at 359 with fuzz 2 (offset 67 lines).
done
install -m 0644 debian/R.bash_completion	\
		debian/r-base-core/etc/bash_completion.d/R
(cd /build/buildd/r-base-2.14.1/debian/r-base-core/usr/lib/; \
		ln -sv R/lib/libR.so . )
`./libR.so' -> `R/lib/libR.so'
touch install-arch-stamp
*** binary-arch ***
dh_testdir -a
dh_testroot -a
dh_installdocs -pr-base-core NEWS ONEWS OONEWS README \
					debian/README.Atlas \
					debian/README.mathlib
dh_installdocs -pr-mathlib  NEWS ONEWS OONEWS README \
					debian/README.mathlib
dh_installdocs -pr-base-core-dbg				
dh_installexamples -pr-mathlib	src/nmath/standalone/test.c
dh_installmenu -a
# (cd /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../../lib/R/doc .)
(cd /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../R/doc .)
(cd /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../../lib/R/library .)
install -p -m 0644  debian/r-base-core.lintian \
	   /build/buildd/r-base-2.14.1/debian/r-base-core/usr/share/lintian/overrides/r-base-core
install -p -m 0644  debian/r-recommended.lintian \
	   /build/buildd/r-base-2.14.1/debian/r-recommended/usr/share/lintian/overrides/r-recommended
install -p -m 0644  debian/r-mathlib.lintian \
	   /build/buildd/r-base-2.14.1/debian/r-mathlib/usr/share/lintian/overrides/r-mathlib
install -p -m 0644  debian/r-base-core-dbg.lintian \
	   /build/buildd/r-base-2.14.1/debian/r-base-core-dbg/usr/share/lintian/overrides/r-base-core-dbg
dh_installchangelogs -a	-k NEWS 
dh_strip	--sourcedir=/build/buildd/r-base-2.14.1/debian/r-base-core --dbg-package=r-base-core-dbg
dh_strip debug symbol extraction: all non-arch-all packages for this build platform i386: r-base-core r-mathlib r-base-core-dbg 
dh_strip debug symbol extraction: not adding gnu debuglinks since --dbg-package is given
dh_strip debug symbol extraction: packages to act on: r-base-core r-mathlib r-base-core-dbg 
dh_strip debug symbol extraction: ignored packages: 
dpkg-deb: building package `r-base-core-dbgsym' in `../r-base-core-dbgsym_2.14.1-1_i386.ddeb'.
dpkg-deb: building package `r-mathlib-dbgsym' in `../r-mathlib-dbgsym_2.14.1-1_i386.ddeb'.
Unknown option: sourcedir
dh_strip 	--sourcedir=/build/buildd/r-base-2.14.1/debian/r-mathlib
dh_strip debug symbol extraction: all non-arch-all packages for this build platform i386: r-base-core r-mathlib r-base-core-dbg 
dh_strip debug symbol extraction: packages to act on: r-base-core r-mathlib r-base-core-dbg 
dh_strip debug symbol extraction: ignored packages: 
r-base-core is already stripped, ignoring
r-mathlib is already stripped, ignoring
Unknown option: sourcedir
dh_compress -a
dh_fixperms -a
dh_link -a
dh_makeshlibs -a
dh_installdeb -a
dh_perl -a
dh_shlibdeps -a -l /build/buildd/r-base-2.14.1/debian/r-base-core/usr/lib/R/lib
dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so'
dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so'
dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so'
dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so'
dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so'
dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so'
dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so'
dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so'
dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so'
dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so'
dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so'
dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so'
dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so'
dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so'
dpkg-shlibdeps: warning: symbol fmod used by debian/r-mathlib/usr/lib/libRmath.so.1.0.0 found in none of the libraries.
dpkg-shlibdeps: warning: symbol trunc used by debian/r-mathlib/usr/lib/libRmath.so.1.0.0 found in none of the libraries.
dpkg-shlibdeps: warning: symbol sincos used by debian/r-mathlib/usr/lib/libRmath.so.1.0.0 found in none of the libraries.
dpkg-shlibdeps: warning: symbol sinh used by debian/r-mathlib/usr/lib/libRmath.so.1.0.0 found in none of the libraries.
dpkg-shlibdeps: warning: symbol floor used by debian/r-mathlib/usr/lib/libRmath.so.1.0.0 found in none of the libraries.
dpkg-shlibdeps: warning: symbol log10 used by debian/r-mathlib/usr/lib/libRmath.so.1.0.0 found in none of the libraries.
dpkg-shlibdeps: warning: symbol pow used by debian/r-mathlib/usr/lib/libRmath.so.1.0.0 found in none of the libraries.
dpkg-shlibdeps: warning: symbol expm1 used by debian/r-mathlib/usr/lib/libRmath.so.1.0.0 found in none of the libraries.
dpkg-shlibdeps: warning: symbol exp used by debian/r-mathlib/usr/lib/libRmath.so.1.0.0 found in none of the libraries.
dpkg-shlibdeps: warning: symbol lgamma used by debian/r-mathlib/usr/lib/libRmath.so.1.0.0 found in none of the libraries.
dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all).
dh_gencontrol -a
dpkg-gencontrol: warning: Depends field of package r-base-core: unknown substitution variable ${perl:Depends}
dh_md5sums -a		-X'usr/bin/R' -X'usr/bin/Rscript' \
				-X'usr/lib/debug/usr/bin/Rscript' \
				-X'usr/lib/R/bin/Rscript'  	  \
				-X'usr/lib/R/etc/Renviron.ucf'    \
					-XLibIndex -Xindex.txt \
					-Xfunction.html -Xpackages.html
dh_builddeb -a
INFO: pkgstriptranslations version 110
pkgstriptranslations: processing r-base-core (in debian/r-base-core); do_strip: , oemstrip: 
pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>"
pkgstripfiles: processing control file: debian/r-base-core/DEBIAN/control, package r-base-core, directory debian/r-base-core
.. removing usr/share/doc/r-base-core/changelog.gz
pkgstripfiles: Truncating usr/share/doc/r-base-core/changelog.Debian.gz to topmost ten records
OptiPNG 0.6.4: Advanced PNG optimizer.
Copyright (C) 2001-2010 Cosmin Truta.

** Processing: ./usr/lib/R/library/graphics/help/figures/mai.png
600x600 pixels, 8 bits/pixel, grayscale
Reducing image to 2 bits/pixel, 3 colors in palette
Input IDAT size = 4588 bytes
Input file size = 4666 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 2489
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 2450
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 1
  zc = 9  zm = 8  zs = 1  f = 1
  zc = 1  zm = 8  zs = 2  f = 1
  zc = 9  zm = 8  zs = 3  f = 1
  zc = 9  zm = 8  zs = 0  f = 2
  zc = 9  zm = 8  zs = 1  f = 2
  zc = 1  zm = 8  zs = 2  f = 2
  zc = 9  zm = 8  zs = 3  f = 2
  zc = 9  zm = 8  zs = 0  f = 3
  zc = 9  zm = 8  zs = 1  f = 3
  zc = 1  zm = 8  zs = 2  f = 3
  zc = 9  zm = 8  zs = 3  f = 3
  zc = 9  zm = 8  zs = 0  f = 4
  zc = 9  zm = 8  zs = 1  f = 4
  zc = 1  zm = 8  zs = 2  f = 4
  zc = 9  zm = 8  zs = 3  f = 4
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 2450

Output IDAT size = 2450 bytes (2138 bytes decrease)
Output file size = 2549 bytes (2117 bytes = 45.37% decrease)

        2549        2549 100% ./usr/lib/R/library/graphics/help/figures/mai.png (Bigger 3424)
        2549        2549 100%
OptiPNG 0.6.4: Advanced PNG optimizer.
Copyright (C) 2001-2010 Cosmin Truta.

** Processing: ./usr/lib/R/library/graphics/help/figures/oma.png
540x690 pixels, 8 bits/pixel, grayscale
Reducing image to 2 bits/pixel, 3 colors in palette
Input IDAT size = 5035 bytes
Input file size = 5113 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 2641
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 2597
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 1
  zc = 9  zm = 8  zs = 1  f = 1
  zc = 1  zm = 8  zs = 2  f = 1
  zc = 9  zm = 8  zs = 3  f = 1
  zc = 9  zm = 8  zs = 0  f = 2
  zc = 9  zm = 8  zs = 1  f = 2
  zc = 1  zm = 8  zs = 2  f = 2
  zc = 9  zm = 8  zs = 3  f = 2
  zc = 9  zm = 8  zs = 0  f = 3
  zc = 9  zm = 8  zs = 1  f = 3
  zc = 1  zm = 8  zs = 2  f = 3
  zc = 9  zm = 8  zs = 3  f = 3
  zc = 9  zm = 8  zs = 0  f = 4
  zc = 9  zm = 8  zs = 1  f = 4
  zc = 1  zm = 8  zs = 2  f = 4
  zc = 9  zm = 8  zs = 3  f = 4
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 2597

Output IDAT size = 2597 bytes (2438 bytes decrease)
Output file size = 2696 bytes (2417 bytes = 47.27% decrease)

        2696        2696 100% ./usr/lib/R/library/graphics/help/figures/oma.png (Bigger 3921)
        2696        2696 100%
OptiPNG 0.6.4: Advanced PNG optimizer.
Copyright (C) 2001-2010 Cosmin Truta.

** Processing: ./usr/lib/R/library/graphics/help/figures/pch.png
700x70 pixels, 4x8 bits/pixel, RGB+alpha
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8400 bytes
Input file size = 9286 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 3233
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 1
  zc = 9  zm = 8  zs = 1  f = 1
  zc = 1  zm = 8  zs = 2  f = 1
  zc = 9  zm = 8  zs = 3  f = 1
  zc = 9  zm = 8  zs = 0  f = 2
  zc = 9  zm = 8  zs = 1  f = 2
  zc = 1  zm = 8  zs = 2  f = 2
  zc = 9  zm = 8  zs = 3  f = 2
  zc = 9  zm = 8  zs = 0  f = 3
  zc = 9  zm = 8  zs = 1  f = 3
  zc = 1  zm = 8  zs = 2  f = 3
  zc = 9  zm = 8  zs = 3  f = 3
  zc = 9  zm = 8  zs = 0  f = 4
  zc = 9  zm = 8  zs = 1  f = 4
  zc = 1  zm = 8  zs = 2  f = 4
  zc = 9  zm = 8  zs = 3  f = 4
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 3233

Output IDAT size = 3233 bytes (5167 bytes decrease)
Output file size = 4107 bytes (5179 bytes = 55.77% decrease)

        4107        4107 100% ./usr/lib/R/library/graphics/help/figures/pch.png (Unsupported bit depth/color type, 8/0)
        4107        4107 100%
pkgstripfiles: PNG optimization for package r-base-core took 2 s
dpkg-deb: warning: 'debian/r-base-core/DEBIAN/control' contains user-defined field 'Original-Maintainer'
dpkg-deb: warning: ignoring 1 warning about the control file(s)

dpkg-deb: building package `r-base-core' in `../r-base-core_2.14.1-1_i386.deb'.
INFO: pkgstriptranslations version 110
pkgstriptranslations: processing r-mathlib (in debian/r-mathlib); do_strip: , oemstrip: 
pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>"
pkgstripfiles: processing control file: debian/r-mathlib/DEBIAN/control, package r-mathlib, directory debian/r-mathlib
.. removing usr/share/doc/r-mathlib/changelog.gz
pkgstripfiles: Truncating usr/share/doc/r-mathlib/changelog.Debian.gz to topmost ten records
pkgstripfiles: PNG optimization for package r-mathlib took 0 s
dpkg-deb: warning: 'debian/r-mathlib/DEBIAN/control' contains user-defined field 'Original-Maintainer'
dpkg-deb: warning: ignoring 1 warning about the control file(s)

dpkg-deb: building package `r-mathlib' in `../r-mathlib_2.14.1-1_i386.deb'.
INFO: pkgstriptranslations version 110
pkgstriptranslations: processing r-base-core-dbg (in debian/r-base-core-dbg); do_strip: , oemstrip: 
pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>"
pkgstripfiles: processing control file: debian/r-base-core-dbg/DEBIAN/control, package r-base-core-dbg, directory debian/r-base-core-dbg
.. removing usr/share/doc/r-base-core-dbg/changelog.gz
Searching for duplicated docs in dependency r-base-core...
  symlinking changelog.Debian.gz in r-base-core-dbg to file in r-base-core
pkgstripfiles: PNG optimization for package r-base-core-dbg took 0 s
dpkg-deb: warning: 'debian/r-base-core-dbg/DEBIAN/control' contains user-defined field 'Original-Maintainer'
dpkg-deb: warning: ignoring 1 warning about the control file(s)

dpkg-deb: building package `r-base-core-dbg' in `../r-base-core-dbg_2.14.1-1_i386.deb'.
*** binary-indep ***
dh_testdir -i
dh_testroot -i
dh_link -i 
dh_installdocs -i
dh_installdocs -v -pr-doc-html				
	install -g 0 -o 0 -m 644 -p debian/copyright debian/r-doc-html/usr/share/doc/r-doc-html/copyright
	install -g 0 -o 0 -m644 -p debian/r-doc-html.doc-base.admin debian/r-doc-html/usr/share/doc-base/r-admin
	install -g 0 -o 0 -m644 -p debian/r-doc-html.doc-base.faq debian/r-doc-html/usr/share/doc-base/r-faq
	install -g 0 -o 0 -m644 -p debian/r-doc-html.doc-base.data debian/r-doc-html/usr/share/doc-base/r-data
	install -g 0 -o 0 -m644 -p debian/r-doc-html.doc-base.ints debian/r-doc-html/usr/share/doc-base/r-ints
	install -g 0 -o 0 -m644 -p debian/r-doc-html.doc-base.exts debian/r-doc-html/usr/share/doc-base/r-extensions
	install -g 0 -o 0 -m644 -p debian/r-doc-html.doc-base.lang debian/r-doc-html/usr/share/doc-base/r-language
	install -g 0 -o 0 -m644 -p debian/r-doc-html.doc-base.intro debian/r-doc-html/usr/share/doc-base/r-intro
dh_installchangelogs -i	
dh_installdirs -pr-base-dev usr/share/R/debian
install -p -m 0755  debian/r-cran.mk \
		/build/buildd/r-base-2.14.1/debian/r-base-dev/usr/share/R/debian
dh_compress -i
dh_fixperms -i
dh_installdeb -i
dh_gencontrol -i
dh_md5sums -i		-X'usr/bin/R' 
dh_builddeb -i
INFO: pkgstriptranslations version 110
pkgstriptranslations: processing r-base (in debian/r-base); do_strip: , oemstrip: 
pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>"
pkgstripfiles: processing control file: debian/r-base/DEBIAN/control, package r-base, directory debian/r-base
Searching for duplicated docs in dependency r-base-core...
  symlinking changelog.Debian.gz in r-base to file in r-base-core
Searching for duplicated docs in dependency r-recommended...
pkgstripfiles: PNG optimization for package r-base took 0 s
dpkg-deb: warning: 'debian/r-base/DEBIAN/control' contains user-defined field 'Original-Maintainer'
dpkg-deb: warning: ignoring 1 warning about the control file(s)

dpkg-deb: building package `r-base' in `../r-base_2.14.1-1_all.deb'.
INFO: pkgstriptranslations version 110
pkgstriptranslations: processing r-base-dev (in debian/r-base-dev); do_strip: , oemstrip: 
pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>"
pkgstripfiles: processing control file: debian/r-base-dev/DEBIAN/control, package r-base-dev, directory debian/r-base-dev
pkgstripfiles: PNG optimization for package r-base-dev took 0 s
dpkg-deb: warning: 'debian/r-base-dev/DEBIAN/control' contains user-defined field 'Original-Maintainer'
dpkg-deb: warning: ignoring 1 warning about the control file(s)

dpkg-deb: building package `r-base-dev' in `../r-base-dev_2.14.1-1_all.deb'.
INFO: pkgstriptranslations version 110
pkgstriptranslations: processing r-base-html (in debian/r-base-html); do_strip: , oemstrip: 
pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>"
pkgstripfiles: processing control file: debian/r-base-html/DEBIAN/control, package r-base-html, directory debian/r-base-html
Searching for duplicated docs in dependency r-base-core...
  symlinking changelog.Debian.gz in r-base-html to file in r-base-core
pkgstripfiles: PNG optimization for package r-base-html took 0 s
dpkg-deb: warning: 'debian/r-base-html/DEBIAN/control' contains user-defined field 'Original-Maintainer'
dpkg-deb: warning: ignoring 1 warning about the control file(s)

dpkg-deb: building package `r-base-html' in `../r-base-html_2.14.1-1_all.deb'.
INFO: pkgstriptranslations version 110
pkgstriptranslations: processing r-doc-pdf (in debian/r-doc-pdf); do_strip: , oemstrip: 
pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>"
pkgstripfiles: processing control file: debian/r-doc-pdf/DEBIAN/control, package r-doc-pdf, directory debian/r-doc-pdf
pkgstripfiles: Truncating usr/share/doc/r-doc-pdf/changelog.Debian.gz to topmost ten records
pkgstripfiles: PNG optimization for package r-doc-pdf took 0 s
dpkg-deb: warning: 'debian/r-doc-pdf/DEBIAN/control' contains user-defined field 'Original-Maintainer'
dpkg-deb: warning: ignoring 1 warning about the control file(s)

dpkg-deb: building package `r-doc-pdf' in `../r-doc-pdf_2.14.1-1_all.deb'.
INFO: pkgstriptranslations version 110
pkgstriptranslations: processing r-doc-html (in debian/r-doc-html); do_strip: , oemstrip: 
pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>"
pkgstripfiles: processing control file: debian/r-doc-html/DEBIAN/control, package r-doc-html, directory debian/r-doc-html
pkgstripfiles: Truncating usr/share/doc/r-doc-html/changelog.Debian.gz to topmost ten records
pkgstripfiles: PNG optimization for package r-doc-html took 0 s
dpkg-deb: warning: 'debian/r-doc-html/DEBIAN/control' contains user-defined field 'Original-Maintainer'
dpkg-deb: warning: ignoring 1 warning about the control file(s)

dpkg-deb: building package `r-doc-html' in `../r-doc-html_2.14.1-1_all.deb'.
INFO: pkgstriptranslations version 110
pkgstriptranslations: processing r-doc-info (in debian/r-doc-info); do_strip: , oemstrip: 
pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>"
pkgstripfiles: processing control file: debian/r-doc-info/DEBIAN/control, package r-doc-info, directory debian/r-doc-info
pkgstripfiles: Truncating usr/share/doc/r-doc-info/changelog.Debian.gz to topmost ten records
pkgstripfiles: PNG optimization for package r-doc-info took 0 s
dpkg-deb: warning: 'debian/r-doc-info/DEBIAN/control' contains user-defined field 'Original-Maintainer'
dpkg-deb: warning: ignoring 1 warning about the control file(s)

dpkg-deb: building package `r-doc-info' in `../r-doc-info_2.14.1-1_all.deb'.
INFO: pkgstriptranslations version 110
pkgstriptranslations: processing r-recommended (in debian/r-recommended); do_strip: , oemstrip: 
pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>"
pkgstripfiles: processing control file: debian/r-recommended/DEBIAN/control, package r-recommended, directory debian/r-recommended
pkgstripfiles: PNG optimization for package r-recommended took 0 s
dpkg-deb: warning: 'debian/r-recommended/DEBIAN/control' contains user-defined field 'Original-Maintainer'
dpkg-deb: warning: ignoring 1 warning about the control file(s)

dpkg-deb: building package `r-recommended' in `../r-recommended_2.14.1-1_all.deb'.
 dpkg-genchanges -b -mUbuntu/amd64 Build Daemon <buildd@roseapple.buildd> >../r-base_2.14.1-1_i386.changes
dpkg-genchanges: binary-only upload - not including any source code
 dpkg-source --after-build r-base-2.14.1
dpkg-buildpackage: binary only upload (no source included)
******************************************************************************
Build finished at 20120101-0853
Publishing debug debs.

chroot-autobuild/build/buildd/r-base-core_2.14.1-1_i386.deb:
 new debian package, version 2.0.
 size 19864692 bytes: control archive= 24625 bytes.
     118 bytes,     6 lines      conffiles            
    2739 bytes,    45 lines      control              
   60329 bytes,   783 lines      md5sums              
    2453 bytes,    73 lines   *  postinst             #!/bin/sh
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  R is a system for statistical computation and graphics.  It consists
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  access to certain system functions, and the ability to run programs
  stored in script files.
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  The design of R has been heavily influenced by two existing languages:
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  resulting language is very similar in appearance to S, the underlying
  implementation and semantics are derived from Scheme.
  .
  The core of R is an interpreted computer language which allows
  branching and looping as well as modular programming using functions.
  Most of the user-visible functions in R are written in R.  It is
  possible for the user to interface to procedures written in the
  C, C++, or FORTRAN languages for efficiency, and many of R's core
  functions do so.  The R distribution contains functionality for a
  large number of statistical procedures and underlying applied math
  computations.  There is also a large set of functions which provide
  a flexible graphical environment for creating various kinds of data
  presentations.
  .
  Additionally, over two thousand extension "packages" are available
  from CRAN, the Comprehensive R Archive Network, many also as Debian
  packages, named 'r-cran-<name>'.
  .
  This package provides the core GNU R system from which only the optional
  documentation packages r-base-html, r-doc-html, r-doc-pdf and r-doc-info
  have been split off to somewhat reduce the size of this package.

chroot-autobuild/build/buildd/r-mathlib_2.14.1-1_i386.deb:
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      30 bytes,     1 lines      shlibs               
 Package: r-mathlib
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 Version: 2.14.1-1
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 Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
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 Installed-Size: 1027
 Depends: libc6 (>= 2.3.6-6~)
 Recommends: r-base-core (= 2.14.1-1), r-base-dev (= 2.14.1-1)
 Section: gnu-r
 Priority: optional
 Homepage: http://www.r-project.org/
 Description: GNU R standalone mathematics library
  R is a system for statistical computation and graphics.  It consists
  of a language plus a run-time environment with graphics, a debugger,
  access to certain system functions, and the ability to run programs
  stored in script files.
  .
  The design of R has been heavily influenced by two existing languages:
  Becker, Chambers & Wilks' S and Sussman's Scheme.  Whereas the
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  implementation and semantics are derived from Scheme.
  .
  The core of R is an interpreted computer language which allows
  branching and looping as well as modular programming using functions.
  Most of the user-visible functions in R are written in R.  It is
  possible for the user to interface to procedures written in the
  C, C++, or FORTRAN languages for efficiency, and many of R's core
  functions do so.  The R distribution contains functionality for a
  large number of statistical procedures and underlying applied math
  computations.  There is also a large set of functions which provide
  a flexible graphical environment for creating various kinds of data
  presentations.
  .
  Additionally, over thousand extension "packages" are available from
  CRAN, the Comprehensive R Archive Network, many also as Debian packages,
  named 'r-cran-<name>'.
  .
  This package provides the libRmath shared and static libraries which can
  be called from standalone C or C++ code.

chroot-autobuild/build/buildd/r-base-core-dbg_2.14.1-1_i386.deb:
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 Priority: extra
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 Description: GNU R debug symbols for statistical comp. language and environment
  R is a system for statistical computation and graphics.  It consists
  of a language plus a run-time environment with graphics, a debugger,
  access to certain system functions, and the ability to run programs
  stored in script files.
  .
  The design of R has been heavily influenced by two existing languages:
  Becker, Chambers & Wilks' S and Sussman's Scheme.  Whereas the
  resulting language is very similar in appearance to S, the underlying
  implementation and semantics are derived from Scheme.
  .
  The core of R is an interpreted computer language which allows
  branching and looping as well as modular programming using functions.
  Most of the user-visible functions in R are written in R.  It is
  possible for the user to interface to procedures written in the
  C, C++, or FORTRAN languages for efficiency, and many of R's core
  functions do so.  The R distribution contains functionality for a
  large number of statistical procedures and underlying applied math
  computations.  There is also a large set of functions which provide
  a flexible graphical environment for creating various kinds of data
  presentations.
  .
  Additionally, over thousand extension "packages" are available from
  CRAN, the Comprehensive R Archive Network, many also as Debian packages,
  named 'r-cran-<name>'.
  .
  This package contains debugging symbol tables for the binaries and dynamic
  libraries in the r-base-core package.

chroot-autobuild/build/buildd/r-base_2.14.1-1_all.deb:
 new debian package, version 2.0.
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 Package: r-base
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 Section: gnu-r
 Priority: optional
 Homepage: http://www.r-project.org/
 Description: GNU R statistical computation and graphics system
  R is a system for statistical computation and graphics.  It consists
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  access to certain system functions, and the ability to run programs
  stored in script files.
  .
  The design of R has been heavily influenced by two existing languages:
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  resulting language is very similar in appearance to S, the underlying
  implementation and semantics are derived from Scheme.
  .
  The core of R is an interpreted computer language which allows
  branching and looping as well as modular programming using functions.
  Most of the user-visible functions in R are written in R.  It is
  possible for the user to interface to procedures written in the
  C, C++, or FORTRAN languages for efficiency, and many of R's core
  functions do so.  The R distribution contains functionality for a
  large number of statistical procedures and underlying applied math
  computations.  There is also a large set of functions which provide
  a flexible graphical environment for creating various kinds of data
  presentations.
  .
  Additionally, over thousand extension "packages" are available from
  CRAN, the Comprehensive R Archive Network, many also as Debian packages,
  named 'r-cran-<name>'.
  .
  This package is a metapackage which eases the transition from the
  pre-1.5.0 package setup with its larger r-base package. Once installed, it
  can be safely removed and apt-get will automatically upgrade its components
  during future upgrades.  Providing this package gives a way to users to
  then only install r-base-core if they so desire.

chroot-autobuild/build/buildd/r-base-dev_2.14.1-1_all.deb:
 new debian package, version 2.0.
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    2234 bytes,    40 lines      control              
      63 bytes,     1 lines      md5sums              
     425 bytes,    26 lines   *  preinst              #!/bin/sh
 Package: r-base-dev
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 Version: 2.14.1-1
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 Suggests: debhelper, texlive-base, texlive-latex-base, texlive-generic-recommended, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, texinfo, texi2html
 Section: gnu-r
 Priority: optional
 Homepage: http://www.r-project.org/
 Description: GNU R installation of auxiliary GNU R packages
  R is a system for statistical computation and graphics.  It consists
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  The core of R is an interpreted computer language which allows
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  Additionally, over thousand extension "packages" are available from
  CRAN, the Comprehensive R Archive Network, many also as Debian packages,
  named 'r-cran-<name>'.
  .
  This package ensures that other Debian packages needed for installation of
  some auxiliary R packages are installed.

chroot-autobuild/build/buildd/r-base-html_2.14.1-1_all.deb:
 new debian package, version 2.0.
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    2006 bytes,    43 lines      control              
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 Depends: r-base-core
 Suggests: r-doc-html, mozilla | www-browser
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 Section: doc
 Priority: extra
 Homepage: http://www.r-project.org/
 Description: GNU R html docs for statistical computing system functions
  R is a system for statistical computation and graphics.  It consists
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  access to certain system functions, and the ability to run programs
  stored in script files.
  .
  The design of R has been heavily influenced by two existing languages:
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  resulting language is very similar in appearance to S, the underlying
  implementation and semantics are derived from Scheme.
  .
  The core of R is an interpreted computer language which allows
  branching and looping as well as modular programming using functions.
  Most of the user-visible functions in R are written in R.  It is
  possible for the user to interface to procedures written in the
  C, C++, or FORTRAN languages for efficiency, and many of R's core
  functions do so.  The R distribution contains functionality for a
  large number of statistical procedures and underlying applied math
  computations.  There is also a large set of functions which provide
  a flexible graphical environment for creating various kinds of data
  presentations.
  .
  Additionally, over thousand extension "packages" are available from
  CRAN, the Comprehensive R Archive Network, many also as Debian packages,
  named 'r-cran-<name>'.
  .
  This package provides html documentation suitable for browsing with a
  web-browser for the libraries included in the r-base package. It is not
  a required package as the same documentation is already included for
  on-line browsing.

chroot-autobuild/build/buildd/r-doc-pdf_2.14.1-1_all.deb:
 new debian package, version 2.0.
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  .
  The design of R has been heavily influenced by two existing languages:
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  .
  The core of R is an interpreted computer language which allows
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  presentations.
  .
  Additionally, over thousand extension "packages" are available from
  CRAN, the Comprehensive R Archive Network, many also as Debian packages,
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  .
  This package provides the R manuals in pdf format. The sibling packages
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chroot-autobuild/build/buildd/r-doc-html_2.14.1-1_all.deb:
 new debian package, version 2.0.
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     635 bytes,    32 lines   *  preinst              #!/bin/sh
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  .
  The design of R has been heavily influenced by two existing languages:
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  implementation and semantics are derived from Scheme.
  .
  The core of R is an interpreted computer language which allows
  branching and looping as well as modular programming using functions.
  Most of the user-visible functions in R are written in R.  It is
  possible for the user to interface to procedures written in the
  C, C++, or FORTRAN languages for efficiency, and many of R's core
  functions do so.  The R distribution contains functionality for a
  large number of statistical procedures and underlying applied math
  computations.  There is also a large set of functions which provide
  a flexible graphical environment for creating various kinds of data
  presentations.
  .
  Additionally, over thousand extension "packages" are available from
  CRAN, the Comprehensive R Archive Network, many also as Debian packages,
  named 'r-cran-<name>'.
  .
  This package provides the R manuals in html format. The sibling packages
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chroot-autobuild/build/buildd/r-doc-info_2.14.1-1_all.deb:
 new debian package, version 2.0.
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 Priority: optional
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  access to certain system functions, and the ability to run programs
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  .
  The design of R has been heavily influenced by two existing languages:
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  resulting language is very similar in appearance to S, the underlying
  implementation and semantics are derived from Scheme.
  .
  The core of R is an interpreted computer language which allows
  branching and looping as well as modular programming using functions.
  Most of the user-visible functions in R are written in R.  It is
  possible for the user to interface to procedures written in the
  C, C++, or FORTRAN languages for efficiency, and many of R's core
  functions do so.  The R distribution contains functionality for a
  large number of statistical procedures and underlying applied math
  computations.  There is also a large set of functions which provide
  a flexible graphical environment for creating various kinds of data
  presentations.
  .
  Additionally, over thousand extension "packages" are available from
  CRAN, the Comprehensive R Archive Network, many also as Debian packages,
  named 'r-cran-<name>'.
  .
  This package provides the R manuals in info format. The sibling packages
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chroot-autobuild/build/buildd/r-recommended_2.14.1-1_all.deb:
 new debian package, version 2.0.
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      76 bytes,     1 lines      md5sums              
     434 bytes,    26 lines   *  preinst              #!/bin/sh
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 Installed-Size: 41
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 Section: gnu-r
 Priority: optional
 Homepage: http://www.r-project.org/
 Description: GNU R collection of recommended packages [metapackage]
  R is a system for statistical computation and graphics.  It consists
  of a language plus a run-time environment with graphics, a debugger,
  access to certain system functions, and the ability to run programs
  stored in script files.
  .
  The design of R has been heavily influenced by two existing languages:
  Becker, Chambers & Wilks' S and Sussman's Scheme.  Whereas the
  resulting language is very similar in appearance to S, the underlying
  implementation and semantics are derived from Scheme.
  .
  The core of R is an interpreted computer language which allows
  branching and looping as well as modular programming using functions.
  Most of the user-visible functions in R are written in R.  It is
  possible for the user to interface to procedures written in the
  C, C++, or FORTRAN languages for efficiency, and many of R's core
  functions do so.  The R distribution contains functionality for a
  large number of statistical procedures and underlying applied math
  computations.  There is also a large set of functions which provide
  a flexible graphical environment for creating various kinds of data
  presentations.
  .
  Additionally, over thousand extension "packages" are available from
  CRAN, the Comprehensive R Archive Network, many also as Debian packages,
  named 'r-cran-<name>'.
  .
  This Debian package is now a metapackage that depends on a set of
  packages that are recommended by the upstream R core team as part of a
  complete R distribution, and distributed along with the source of R
  itself, as well as directly via the CRAN network of mirrors. This set
  comprises the following packages (listed in their upstream names):
   - KernSmooth: Functions for kernel smoothing for Wand & Jones (1995)
   - Matrix: Classes and methods for dense and sparse matrices and
     operations on them using Lapack and SuiteSparse
   - MASS, class, nnet and spatial: packages from Venables and Ripley,
     `Modern Applied Statistics with S' (4th edition).
   - boot: Bootstrap R (S-Plus) Functions from the book "Bootstrap Methods
     and Their Applications" by A.C. Davison and D.V. Hinkley (1997).
   - cluster: Functions for clustering (by Rousseeuw et al.)
   - codetools: Code analysis tools for R
   - foreign: Read data stored by Minitab, S, SAS, SPSS, Stata, ...
   - lattice: Implementation of Trellis (R) graphics
   - mgcv: Multiple smoothing parameter estimation and GAMs by GCV
   - nlme: Linear and nonlinear mixed effects models
   - rpart: Recursive partitioning and regression trees
   - survival: Survival analysis, including penalised likelihood.

chroot-autobuild/build/buildd/r-base-core_2.14.1-1_i386.deb:
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drwxr-xr-x root/root         0 2012-01-01 08:52 ./usr/lib/R/lib/
-rw-r--r-- root/root   2808280 2012-01-01 08:52 ./usr/lib/R/lib/libR.so
-rw-r--r-- root/root    475331 2012-01-01 08:52 ./usr/lib/R/NEWS.pdf
drwxr-xr-x root/root         0 2012-01-01 08:52 ./usr/lib/R/etc/
-rw-r--r-- root/root      1881 2012-01-01 08:52 ./usr/lib/R/etc/Renviron.ucf
-rw-r--r-- root/root      1578 2012-01-01 08:52 ./usr/lib/R/etc/Renviron.orig
drwxr-xr-x root/root         0 2012-01-01 08:52 ./usr/lib/R/site-library/
drwxr-xr-x root/root         0 2012-01-01 08:52 ./etc/
drwxr-xr-x root/root         0 2012-01-01 08:52 ./etc/ld.so.conf.d/
drwxr-xr-x root/root         0 2012-01-01 08:52 ./etc/bash_completion.d/
-rw-r--r-- root/root     12841 2012-01-01 08:52 ./etc/bash_completion.d/R
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-rw-r--r-- root/root       593 2012-01-01 08:52 ./etc/R/ldpaths
-rw-r--r-- root/root      5337 2012-01-01 08:52 ./etc/R/Makeconf
lrwxrwxrwx root/root         0 2012-01-01 08:52 ./usr/share/R/doc/COPYING -> ../../common-licenses/GPL-2
lrwxrwxrwx root/root         0 2012-01-01 08:52 ./usr/share/texmf/tex/latex/R -> ../../../R/share/texmf
lrwxrwxrwx root/root         0 2012-01-01 08:52 ./usr/share/doc/r-base-core/library -> ../../../lib/R/library
lrwxrwxrwx root/root         0 2012-01-01 08:52 ./usr/share/doc/r-base-core/NEWS.gz -> changelog.gz
lrwxrwxrwx root/root         0 2012-01-01 08:52 ./usr/share/doc/r-base-core/doc -> ../../R/doc
lrwxrwxrwx root/root         0 2012-01-01 08:52 ./usr/lib/libR.so -> R/lib/libR.so
lrwxrwxrwx root/root         0 2012-01-01 08:52 ./usr/lib/R/COPYING -> ../../share/common-licenses/GPL-2
lrwxrwxrwx root/root         0 2012-01-01 08:52 ./usr/lib/R/etc/Rprofile.site -> /etc/R/Rprofile.site
lrwxrwxrwx root/root         0 2012-01-01 08:52 ./usr/lib/R/etc/Renviron -> /etc/R/Renviron
lrwxrwxrwx root/root         0 2012-01-01 08:52 ./usr/lib/R/etc/repositories -> /etc/R/repositories
lrwxrwxrwx root/root         0 2012-01-01 08:52 ./usr/lib/R/etc/Renviron.site -> /etc/R/Renviron.site
lrwxrwxrwx root/root         0 2012-01-01 08:52 ./usr/lib/R/etc/ldpaths -> /etc/R/ldpaths
lrwxrwxrwx root/root         0 2012-01-01 08:52 ./usr/lib/R/etc/Makeconf -> /etc/R/Makeconf

chroot-autobuild/build/buildd/r-mathlib_2.14.1-1_i386.deb:
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-rw-r--r-- root/root       175 2012-01-01 08:45 ./usr/share/lintian/overrides/r-mathlib
drwxr-xr-x root/root         0 2012-01-01 08:52 ./usr/share/doc/
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-rw-r--r-- root/root      3922 2010-10-08 22:05 ./usr/share/doc/r-mathlib/README
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lrwxrwxrwx root/root         0 2012-01-01 08:52 ./usr/lib/libRmath.so.1 -> libRmath.so.1.0.0
lrwxrwxrwx root/root         0 2012-01-01 08:52 ./usr/lib/libRmath.so -> libRmath.so.1

chroot-autobuild/build/buildd/r-base-core-dbg_2.14.1-1_i386.deb:
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chroot-autobuild/build/buildd/r-base_2.14.1-1_all.deb:
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chroot-autobuild/build/buildd/r-base-dev_2.14.1-1_all.deb:
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lrwxrwxrwx root/root         0 2012-01-01 08:53 ./usr/share/doc/r-base-dev -> r-base-core

chroot-autobuild/build/buildd/r-base-html_2.14.1-1_all.deb:
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chroot-autobuild/build/buildd/r-doc-pdf_2.14.1-1_all.deb:
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chroot-autobuild/build/buildd/r-doc-html_2.14.1-1_all.deb:
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chroot-autobuild/build/buildd/r-doc-info_2.14.1-1_all.deb:
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chroot-autobuild/build/buildd/r-recommended_2.14.1-1_all.deb:
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r-base_2.14.1-1_i386.changes:
Format: 1.8
Date: Thu, 22 Dec 2011 06:32:24 -0600
Source: r-base
Binary: r-base r-base-core r-base-dev r-mathlib r-base-html r-doc-pdf r-doc-html r-doc-info r-recommended r-base-core-dbg
Architecture: i386 all
Version: 2.14.1-1
Distribution: precise
Urgency: low
Maintainer: Ubuntu/amd64 Build Daemon <buildd@roseapple.buildd>
Changed-By: Dirk Eddelbuettel <edd@debian.org>
Description: 
 r-base     - GNU R statistical computation and graphics system
 r-base-core - GNU R core of statistical computation and graphics system
 r-base-core-dbg - GNU R debug symbols for statistical comp. language and environmen
 r-base-dev - GNU R installation of auxiliary GNU R packages
 r-base-html - GNU R html docs for statistical computing system functions
 r-doc-html - GNU R html manuals for statistical computing system
 r-doc-info - GNU R info manuals statistical computing system
 r-doc-pdf  - GNU R pdf manuals for statistical computing system
 r-mathlib  - GNU R standalone mathematics library
 r-recommended - GNU R collection of recommended packages [metapackage]
Changes: 
 r-base (2.14.1-1) unstable; urgency=low
 .
   * New upstream release
 .
   * R/m4, configure: Override bzip2 test for 1.0.6 to let our patched
     1.0.5 version pass as lintian does not like the embedded library
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Purging configuration files for libxpm4 ...
Removing libpopt0 ...
Purging configuration files for libpopt0 ...
Removing tex-common ...
Purging configuration files for tex-common ...
Removing libxcb-shm0 ...
Purging configuration files for libxcb-shm0 ...
Removing libpoppler19 ...
Purging configuration files for libpoppler19 ...
Removing libxcb1-dev ...
Removing ed ...
Removing x11proto-kb-dev ...
Removing libpixman-1-0 ...
Purging configuration files for libpixman-1-0 ...
Removing libpthread-stubs0-dev ...
Removing libxcb-render0 ...
Purging configuration files for libxcb-render0 ...
Removing gettext ...
Removing libgettextpo0 ...
Removing libfontconfig1 ...
Purging configuration files for libfontconfig1 ...
Removing libxt6 ...
Purging configuration files for libxt6 ...
Removing libxau-dev ...
Removing libxext6 ...
Purging configuration files for libxext6 ...
Removing libxdmcp-dev ...
Removing libcroco3 ...
Purging configuration files for libcroco3 ...
Removing libpthread-stubs0 ...
Removing libexpat1 ...
Purging configuration files for libexpat1 ...
Removing x11proto-core-dev ...
Removing gettext-base ...
Removing libunistring0 ...
Purging configuration files for libunistring0 ...
Removing libsm6 ...
Purging configuration files for libsm6 ...
Removing fontconfig-config ...
Purging configuration files for fontconfig-config ...
Removing libx11-6 ...
Purging configuration files for libx11-6 ...
Removing xorg-sgml-doctools ...
Removing libxml2 ...
Purging configuration files for libxml2 ...
Removing libice6 ...
Purging configuration files for libice6 ...
Removing ttf-dejavu-core ...
Removing libxcb1 ...
Purging configuration files for libxcb1 ...
Removing libxau6 ...
Purging configuration files for libxau6 ...
Removing libxdmcp6 ...
Purging configuration files for libxdmcp6 ...
Removing ucf ...
Purging configuration files for ucf ...
Removing libx11-data ...
Removing x11-common ...
invoke-rc.d: policy-rc.d denied execution of stop.
Purging configuration files for x11-common ...
Removing openjdk-6-jre-lib ...
Removing ca-certificates-java ...
Purging configuration files for ca-certificates-java ...
Removing openjdk-6-jre-headless ...
Purging configuration files for openjdk-6-jre-headless ...
Removing liblcms1 ...
Purging configuration files for liblcms1 ...
Removing java-common ...
Removing libjpeg8 ...
Removing libcups2 ...
Purging configuration files for libcups2 ...
Removing tzdata-java ...
Removing libfreetype6 ...
Purging configuration files for libfreetype6 ...
Removing libnss3-1d ...
Removing libnss3 ...
Purging configuration files for libnss3 ...
Removing libjpeg-turbo8 ...
Purging configuration files for libjpeg-turbo8 ...
Removing libnspr4 ...
Purging configuration files for libnspr4 ...
Removing libavahi-client3 ...
Purging configuration files for libavahi-client3 ...
Removing libavahi-common3 ...
Purging configuration files for libavahi-common3 ...
Removing libavahi-common-data ...
Processing triggers for libc-bin ...
ldconfig deferred processing now taking place
Processing triggers for libglib2.0-0 ...
******************************************************************************
Finished at 20120101-0853
Build needed 00:07:57, 258932k disk space
Can't open average time db /var/debbuild/avg-build-times
Can't open average space db /var/debbuild/avg-build-space
RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', 'e73971f7dea06baee2bbf27a58dd38619e2f7212']
Scanning for processes to kill in build /home/buildd/build-e73971f7dea06baee2bbf27a58dd38619e2f7212/chroot-autobuild...
RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'e73971f7dea06baee2bbf27a58dd38619e2f7212']
Unmounting chroot for build e73971f7dea06baee2bbf27a58dd38619e2f7212...
none /home/buildd/build-e73971f7dea06baee2bbf27a58dd38619e2f7212/chroot-autobuild/proc proc rw,relatime 0 0
none /home/buildd/build-e73971f7dea06baee2bbf27a58dd38619e2f7212/chroot-autobuild/dev/pts devpts rw,relatime 0 0
none /home/buildd/build-e73971f7dea06baee2bbf27a58dd38619e2f7212/chroot-autobuild/sys sysfs rw,relatime 0 0
none /home/buildd/build-e73971f7dea06baee2bbf27a58dd38619e2f7212/chroot-autobuild/dev/shm tmpfs rw,relatime 0 0
RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'e73971f7dea06baee2bbf27a58dd38619e2f7212']
Removing build e73971f7dea06baee2bbf27a58dd38619e2f7212