RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux ross 3.2.0-37-powerpc64-smp #58-Ubuntu SMP Thu Jan 24 19:43:28 UTC 2013 ppc64 Buildd toolchain package versions: launchpad-buildd_119~0.IS.08.04 python-lpbuildd_119~0.IS.08.04 bzr_2.5.1-0ubuntu2. Syncing the system clock with the buildd NTP service... 25 Oct 10:31:09 ntpdate[11630]: adjust time server 10.211.37.1 offset 0.000147 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-5160535', '/home/buildd/filecache-default/b94b394cc2bdc71c8f0daf6b0130bdf15bffc4f2'] Unpacking chroot for build PACKAGEBUILD-5160535 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-5160535'] Mounting chroot for build PACKAGEBUILD-5160535 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-5160535', 'deb http://ftpmaster.internal/ubuntu trusty main universe', 'deb http://ftpmaster.internal/ubuntu trusty-security main universe', 'deb http://ftpmaster.internal/ubuntu trusty-updates main universe', 'deb http://ftpmaster.internal/ubuntu trusty-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-5160535 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-5160535', 'powerpc'] Updating debian chroot for build PACKAGEBUILD-5160535 Ign http://archive-team.internal trusty InRelease Ign http://ftpmaster.internal trusty InRelease Ign http://archive-team.internal trusty Release.gpg Get:1 http://archive-team.internal trusty Release [744 B] Ign http://ftpmaster.internal trusty-security InRelease Ign http://ftpmaster.internal trusty-updates InRelease Ign http://ftpmaster.internal trusty-proposed InRelease Get:2 http://ftpmaster.internal trusty Release.gpg [933 B] Get:3 http://ftpmaster.internal trusty-security Release.gpg [933 B] Get:4 http://ftpmaster.internal trusty-updates Release.gpg [933 B] Get:5 http://ftpmaster.internal trusty-proposed Release.gpg [933 B] Get:6 http://archive-team.internal trusty/main powerpc Packages Ign http://archive-team.internal trusty/main Translation-en Get:7 http://ftpmaster.internal trusty Release [49.6 kB] Get:8 http://ftpmaster.internal trusty-security Release [49.6 kB] Get:9 http://ftpmaster.internal trusty-updates Release [49.6 kB] Get:10 http://ftpmaster.internal trusty-proposed Release [49.6 kB] Get:11 http://ftpmaster.internal trusty/main powerpc Packages [1220 kB] Get:12 http://ftpmaster.internal trusty/universe powerpc Packages [5605 kB] Get:13 http://ftpmaster.internal trusty/main Translation-en [721 kB] Get:14 http://ftpmaster.internal trusty/universe Translation-en [3967 kB] Get:15 http://ftpmaster.internal trusty-security/main powerpc Packages [14 B] Get:16 http://ftpmaster.internal trusty-security/universe powerpc Packages [14 B] Get:17 http://ftpmaster.internal trusty-security/main Translation-en [14 B] Get:18 http://ftpmaster.internal trusty-security/universe Translation-en [14 B] Get:19 http://ftpmaster.internal trusty-updates/main powerpc Packages [14 B] Get:20 http://ftpmaster.internal trusty-updates/universe powerpc Packages [14 B] Get:21 http://ftpmaster.internal trusty-updates/main Translation-en [14 B] Get:22 http://ftpmaster.internal trusty-updates/universe Translation-en [14 B] Get:23 http://ftpmaster.internal trusty-proposed/main powerpc Packages [12.9 kB] Get:24 http://ftpmaster.internal trusty-proposed/universe powerpc Packages [101 kB] Get:25 http://ftpmaster.internal trusty-proposed/main Translation-en [7570 B] Get:26 http://ftpmaster.internal trusty-proposed/universe Translation-en [76.1 kB] Fetched 11.9 MB in 14s (832 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: busybox-initramfs initramfs-tools initramfs-tools-bin kmod libdrm2 libgssapi-krb5-2 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 libldap-2.4-2 libsqlite3-0 module-init-tools perl perl-base perl-modules tar upstart 18 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 12.0 MB of archives. After this operation, 2708 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! perl perl-base perl-modules tar libsqlite3-0 libdrm2 libkmod2 kmod module-init-tools libk5crypto3 libgssapi-krb5-2 libkrb5-3 libkrb5support0 libldap-2.4-2 busybox-initramfs initramfs-tools initramfs-tools-bin upstart Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ trusty/main perl powerpc 5.18.1-4 [4072 kB] Get:2 http://ftpmaster.internal/ubuntu/ trusty/main perl-base powerpc 5.18.1-4 [1584 kB] Get:3 http://ftpmaster.internal/ubuntu/ trusty/main perl-modules all 5.18.1-4 [3926 kB] Get:4 http://ftpmaster.internal/ubuntu/ trusty-proposed/main tar powerpc 1.27-1 [235 kB] Get:5 http://ftpmaster.internal/ubuntu/ trusty/main libsqlite3-0 powerpc 3.8.0.2-1ubuntu1 [388 kB] Get:6 http://ftpmaster.internal/ubuntu/ trusty/main libdrm2 powerpc 2.4.46-3ubuntu1 [25.8 kB] Get:7 http://ftpmaster.internal/ubuntu/ trusty/main libkmod2 powerpc 15-0ubuntu2 [47.2 kB] Get:8 http://ftpmaster.internal/ubuntu/ trusty/main kmod powerpc 15-0ubuntu2 [99.1 kB] Get:9 http://ftpmaster.internal/ubuntu/ trusty/main module-init-tools all 15-0ubuntu2 [1874 B] Get:10 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libk5crypto3 powerpc 1.11.3+dfsg-3ubuntu1 [108 kB] Get:11 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libgssapi-krb5-2 powerpc 1.11.3+dfsg-3ubuntu1 [131 kB] Get:12 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libkrb5-3 powerpc 1.11.3+dfsg-3ubuntu1 [356 kB] Get:13 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libkrb5support0 powerpc 1.11.3+dfsg-3ubuntu1 [32.7 kB] Get:14 http://ftpmaster.internal/ubuntu/ trusty/main libldap-2.4-2 powerpc 2.4.31-1+nmu2ubuntu4 [178 kB] Get:15 http://ftpmaster.internal/ubuntu/ trusty/main busybox-initramfs powerpc 1:1.20.0-9ubuntu2 [203 kB] Get:16 http://ftpmaster.internal/ubuntu/ trusty/main initramfs-tools all 0.103ubuntu2 [49.2 kB] Get:17 http://ftpmaster.internal/ubuntu/ trusty/main initramfs-tools-bin powerpc 0.103ubuntu2 [9832 B] Get:18 http://ftpmaster.internal/ubuntu/ trusty/main upstart powerpc 1.10-0ubuntu8 [541 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 12.0 MB in 1s (11.3 MB/s) (Reading database ... 11994 files and directories currently installed.) Preparing to replace perl 5.14.2-21build1 (using .../perl_5.18.1-4_powerpc.deb) ... Unpacking replacement perl ... Preparing to replace perl-base 5.14.2-21build1 (using .../perl-base_5.18.1-4_powerpc.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.18.1-4) ... (Reading database ... 11896 files and directories currently installed.) Preparing to replace perl-modules 5.14.2-21build1 (using .../perl-modules_5.18.1-4_all.deb) ... Unpacking replacement perl-modules ... Preparing to replace tar 1.26+dfsg-8 (using .../tar_1.27-1_powerpc.deb) ... Unpacking replacement tar ... Setting up tar (1.27-1) ... (Reading database ... 11934 files and directories currently installed.) Preparing to replace libsqlite3-0:powerpc 3.7.17-1ubuntu1 (using .../libsqlite3-0_3.8.0.2-1ubuntu1_powerpc.deb) ... Unpacking replacement libsqlite3-0:powerpc ... Preparing to replace libdrm2:powerpc 2.4.46-3 (using .../libdrm2_2.4.46-3ubuntu1_powerpc.deb) ... Unpacking replacement libdrm2:powerpc ... Preparing to replace libkmod2:powerpc 9-3ubuntu1 (using .../libkmod2_15-0ubuntu2_powerpc.deb) ... Unpacking replacement libkmod2:powerpc ... Preparing to replace kmod 9-3ubuntu1 (using .../kmod_15-0ubuntu2_powerpc.deb) ... Unpacking replacement kmod ... Preparing to replace module-init-tools 9-3ubuntu1 (using .../module-init-tools_15-0ubuntu2_all.deb) ... Unpacking replacement module-init-tools ... Preparing to replace libk5crypto3:powerpc 1.10.1+dfsg-6.1ubuntu1 (using .../libk5crypto3_1.11.3+dfsg-3ubuntu1_powerpc.deb) ... Unpacking replacement libk5crypto3:powerpc ... Preparing to replace libgssapi-krb5-2:powerpc 1.10.1+dfsg-6.1ubuntu1 (using .../libgssapi-krb5-2_1.11.3+dfsg-3ubuntu1_powerpc.deb) ... Unpacking replacement libgssapi-krb5-2:powerpc ... Preparing to replace libkrb5-3:powerpc 1.10.1+dfsg-6.1ubuntu1 (using .../libkrb5-3_1.11.3+dfsg-3ubuntu1_powerpc.deb) ... Unpacking replacement libkrb5-3:powerpc ... Preparing to replace libkrb5support0:powerpc 1.10.1+dfsg-6.1ubuntu1 (using .../libkrb5support0_1.11.3+dfsg-3ubuntu1_powerpc.deb) ... Unpacking replacement libkrb5support0:powerpc ... Preparing to replace libldap-2.4-2:powerpc 2.4.31-1+nmu2ubuntu3 (using .../libldap-2.4-2_2.4.31-1+nmu2ubuntu4_powerpc.deb) ... Unpacking replacement libldap-2.4-2:powerpc ... Preparing to replace busybox-initramfs 1:1.20.0-9ubuntu1 (using .../busybox-initramfs_1%3a1.20.0-9ubuntu2_powerpc.deb) ... Unpacking replacement busybox-initramfs ... Preparing to replace initramfs-tools 0.103ubuntu1 (using .../initramfs-tools_0.103ubuntu2_all.deb) ... Unpacking replacement initramfs-tools ... Preparing to replace initramfs-tools-bin 0.103ubuntu1 (using .../initramfs-tools-bin_0.103ubuntu2_powerpc.deb) ... Unpacking replacement initramfs-tools-bin ... Preparing to replace upstart 1.10-0ubuntu7 (using .../upstart_1.10-0ubuntu8_powerpc.deb) ... Unpacking replacement upstart ... Setting up libsqlite3-0:powerpc (3.8.0.2-1ubuntu1) ... Setting up libdrm2:powerpc (2.4.46-3ubuntu1) ... Setting up libkmod2:powerpc (15-0ubuntu2) ... Setting up kmod (15-0ubuntu2) ... Setting up module-init-tools (15-0ubuntu2) ... Setting up libkrb5support0:powerpc (1.11.3+dfsg-3ubuntu1) ... Setting up libk5crypto3:powerpc (1.11.3+dfsg-3ubuntu1) ... Setting up libkrb5-3:powerpc (1.11.3+dfsg-3ubuntu1) ... Setting up libgssapi-krb5-2:powerpc (1.11.3+dfsg-3ubuntu1) ... Setting up libldap-2.4-2:powerpc (2.4.31-1+nmu2ubuntu4) ... Setting up busybox-initramfs (1:1.20.0-9ubuntu2) ... Setting up initramfs-tools-bin (0.103ubuntu2) ... Setting up initramfs-tools (0.103ubuntu2) ... update-initramfs: deferring update (trigger activated) Setting up upstart (1.10-0ubuntu8) ... Setting up perl-modules (5.18.1-4) ... Setting up perl (5.18.1-4) ... Processing triggers for libc-bin ... Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-5160535', 'powerpc', 'trusty-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=trusty-proposed', '--purpose=PRIMARY', '--architecture=powerpc', '--comp=universe', 'r-base_3.0.2-1ubuntu1.dsc'] Initiating build PACKAGEBUILD-5160535 with 2 jobs across 2 processor cores. Kernel reported to sbuild: 3.2.0-37-powerpc64-smp #58-Ubuntu SMP Thu Jan 24 19:43:28 UTC 2013 ppc Automatic build of r-base_3.0.2-1ubuntu1 on ross by sbuild/powerpc 1.170.5 Build started at 20131025-1032 ****************************************************************************** r-base_3.0.2-1ubuntu1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: gcc (>= 4:4.1.0), g++ (>= 4:4.1.0), gfortran (>= 4:4.1.0), libblas-dev, liblapack-dev (>= 3.1.1), tcl8.5-dev, tk8.5-dev, bison, groff-base, libncurses5-dev, libreadline-dev, debhelper (>= 7.2.3), texi2html, texinfo (>= 4.1-2), libbz2-dev, liblzma-dev, libpcre3-dev, xdg-utils, zlib1g-dev, libpng-dev, libjpeg-dev, libx11-dev, libxt-dev, x11proto-core-dev, libpango1.0-dev, libcairo2-dev, libtiff5-dev, xvfb, xauth, xfonts-base, texlive-base, texlive-latex-base, texlive-generic-recommended, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, default-jdk [!arm !hppa !kfreebsd-i386 !kfreebsd-amd64 !hurd-i386 !mips], mpack Checking for already installed source dependencies... gcc: already installed (4:4.8.1-2ubuntu3 >= 4:4.1.0 is satisfied) g++: already installed (4:4.8.1-2ubuntu3 >= 4:4.1.0 is satisfied) gfortran: missing libblas-dev: missing liblapack-dev: missing tcl8.5-dev: missing tk8.5-dev: missing bison: missing groff-base: missing libncurses5-dev: missing libreadline-dev: missing debhelper: missing texi2html: missing texinfo: missing libbz2-dev: missing liblzma-dev: missing libpcre3-dev: missing xdg-utils: missing zlib1g-dev: missing libpng-dev: missing libjpeg-dev: missing libx11-dev: missing libxt-dev: missing x11proto-core-dev: missing libpango1.0-dev: missing libcairo2-dev: missing libtiff5-dev: missing xvfb: missing xauth: missing xfonts-base: missing texlive-base: missing texlive-latex-base: missing texlive-generic-recommended: missing texlive-fonts-recommended: missing texlive-fonts-extra: missing texlive-extra-utils: missing texlive-latex-recommended: missing texlive-latex-extra: missing default-jdk: missing mpack: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install gfortran libblas-dev liblapack-dev tcl8.5-dev tk8.5-dev bison groff-base libncurses5-dev libreadline-dev debhelper texi2html texinfo libbz2-dev liblzma-dev libpcre3-dev xdg-utils zlib1g-dev libpng-dev libjpeg-dev libx11-dev libxt-dev x11proto-core-dev libpango1.0-dev libcairo2-dev libtiff5-dev xvfb xauth xfonts-base texlive-base texlive-latex-base texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra default-jdk mpack Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: apparmor-easyprof bsdmainutils ca-certificates ca-certificates-java default-jre default-jre-headless dh-apparmor dh-python file fontconfig fontconfig-config fonts-cabin fonts-comfortaa fonts-dejavu-core fonts-dejavu-extra fonts-droid fonts-font-awesome fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga fonts-gfs-solomos fonts-inconsolata fonts-junicode fonts-lato fonts-linuxlibertine fonts-oflb-asana-math fonts-sil-gentium fonts-sil-gentium-basic fonts-stix gettext gettext-base gfortran-4.8 gir1.2-freedesktop gir1.2-glib-2.0 gir1.2-pango-1.0 intltool-debian java-common libasound2 libasound2-data libasprintf0c2 libasyncns0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data libavahi-common3 libbison-dev libblas3 libcairo-gobject2 libcairo-script-interpreter2 libcairo2 libcroco3 libcups2 libcupsfilters1 libcupsimage2 libdatrie1 libelfg0 libexpat1 libexpat1-dev libffi6 libflac8 libfontconfig1 libfontconfig1-dev libfontenc1 libfreetype6 libfreetype6-dev libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgfortran-4.8-dev libgfortran3 libgif4 libgirepository-1.0-1 libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libgraphite2-3 libgs9 libgs9-common libgtk2.0-0 libgtk2.0-common libharfbuzz-dev libharfbuzz-icu0 libharfbuzz0a libice-dev libice6 libicu48 libijs-0.35 libintl-perl libjasper1 libjbig-dev libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libkpathsea6 liblapack3 liblcms2-2 liblzo2-2 libmagic1 libnspr4 libnss3 libnss3-1d libogg0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpangoxft-1.0-0 libpaper-utils libpaper1 libpcrecpp0 libpcsclite1 libpipeline1 libpixman-1-0 libpixman-1-dev libpoppler43 libpopt0 libptexenc1 libpthread-stubs0-dev libpulse0 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libreadline6-dev libsigsegv2 libsm-dev libsm6 libsndfile1 libtext-unidecode-perl libthai-data libthai0 libtiff5 libtiffxx5 libtinfo-dev libunistring0 libvorbis0a libvorbisenc2 libwrap0 libx11-6 libx11-data libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-dri2-0 libxcb-glx0 libxcb-render0 libxcb-render0-dev libxcb-shm0 libxcb-shm0-dev libxcb1 libxcb1-dev libxcomposite1 libxcursor1 libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxfont1 libxft-dev libxft2 libxi6 libxinerama1 libxkbfile1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml2 libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender-dev libxrender1 libxss-dev libxss1 libxt6 libxtst6 libxxf86vm1 luatex m4 man-db mime-support openjdk-7-jdk openjdk-7-jre openjdk-7-jre-headless openjdk-7-jre-lib openssl otf-freefont pkg-config po-debconf poppler-data preview-latex-style python python-minimal python2.7 python2.7-minimal python3 python3-minimal python3.3 python3.3-minimal shared-mime-info tcl8.5 tcl8.5-lib tex-common texlive-binaries texlive-pictures tk8.5 tk8.5-lib ttf-dejavu-core ttf-freefont tzdata-java ucf x11-common x11-xkb-utils x11proto-input-dev x11proto-kb-dev x11proto-render-dev x11proto-scrnsaver-dev x11proto-xext-dev xfonts-encodings xfonts-utils xkb-data xorg-sgml-doctools xserver-common xtrans-dev Suggested packages: bison-doc wamerican wordlist whois vacation dh-make fontforge gettext-doc gfortran-multilib gfortran-doc gfortran-4.8-multilib gfortran-4.8-doc libgfortran3-dbg groff equivs libasound2-plugins alsa-utils libcairo2-doc cups-common libglib2.0-doc librsvg2-common gvfs libice-doc libintl-xs-perl libjasper-runtime liblcms2-utils liblzma-doc ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp libpango1.0-doc imagemagick pcscd pulseaudio libsm-doc libxcb-doc libxext-doc libxt-doc less www-browser mail-transport-agent inews openjdk-7-demo openjdk-7-source visualvm icedtea-7-plugin libnss-mdns sun-java6-fonts fonts-ipafont-gothic fonts-ipafont-mincho ttf-wqy-microhei ttf-wqy-zenhei ttf-indic-fonts-core ttf-telugu-fonts ttf-oriya-fonts ttf-kannada-fonts ttf-bengali-fonts libmail-box-perl poppler-utils ghostscript fonts-arphic-ukai fonts-arphic-uming fonts-unfonts-core python-doc python-tk python2.7-doc binfmt-support python3-doc python3-tk python3.3-doc tcl-tclreadline tcl8.5-doc latex2html texinfo-doc-nonfree gv postscript-viewer perl-tk xpdf-reader pdf-viewer fragmaster purifyeps dvidvi dvipng latexmk chktex latexdiff xindy lacheck cm-super libfile-which-perl dot2tex libtcltk-ruby tk8.5-doc gvfs-bin xfs xserver Recommended packages: texlive-xetex curl wget lynx-cur libasprintf-dev libgettextpo-dev libgl1-mesa-dri hicolor-icon-theme libgtk2.0-bin tcpd libx11-doc libxml-sax-expat-perl xml-core texlive-luatex libgnome2-0 libgnomevfs2-0 libgconf2-4 icedtea-7-jre-jamvm libmail-sendmail-perl lmodern ruby wish texlive-fonts-extra-doc tex-gyre texlive-fonts-recommended-doc tipa texlive-latex-base-doc texlive-latex-extra-doc latex-beamer texlive-latex-recommended-doc latex-xcolor prosper texlive-pictures-doc pgf xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils The following NEW packages will be installed: apparmor-easyprof bison bsdmainutils ca-certificates ca-certificates-java debhelper default-jdk default-jre default-jre-headless dh-apparmor dh-python file fontconfig fontconfig-config fonts-cabin fonts-comfortaa fonts-dejavu-core fonts-dejavu-extra fonts-droid fonts-font-awesome fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga fonts-gfs-solomos fonts-inconsolata fonts-junicode fonts-lato fonts-linuxlibertine fonts-oflb-asana-math fonts-sil-gentium fonts-sil-gentium-basic fonts-stix gettext gettext-base gfortran gfortran-4.8 gir1.2-freedesktop gir1.2-glib-2.0 gir1.2-pango-1.0 groff-base intltool-debian java-common libasound2 libasound2-data libasprintf0c2 libasyncns0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data libavahi-common3 libbison-dev libblas-dev libblas3 libbz2-dev libcairo-gobject2 libcairo-script-interpreter2 libcairo2 libcairo2-dev libcroco3 libcups2 libcupsfilters1 libcupsimage2 libdatrie1 libelfg0 libexpat1 libexpat1-dev libffi6 libflac8 libfontconfig1 libfontconfig1-dev libfontenc1 libfreetype6 libfreetype6-dev libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgfortran-4.8-dev libgfortran3 libgif4 libgirepository-1.0-1 libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libgraphite2-3 libgs9 libgs9-common libgtk2.0-0 libgtk2.0-common libharfbuzz-dev libharfbuzz-icu0 libharfbuzz0a libice-dev libice6 libicu48 libijs-0.35 libintl-perl libjasper1 libjbig-dev libjbig0 libjbig2dec0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libkpathsea6 liblapack-dev liblapack3 liblcms2-2 liblzma-dev liblzo2-2 libmagic1 libncurses5-dev libnspr4 libnss3 libnss3-1d libogg0 libpango-1.0-0 libpango1.0-dev libpangocairo-1.0-0 libpangoft2-1.0-0 libpangoxft-1.0-0 libpaper-utils libpaper1 libpcre3-dev libpcrecpp0 libpcsclite1 libpipeline1 libpixman-1-0 libpixman-1-dev libpng12-dev libpoppler43 libpopt0 libptexenc1 libpthread-stubs0-dev libpulse0 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libreadline-dev libreadline6-dev libsigsegv2 libsm-dev libsm6 libsndfile1 libtext-unidecode-perl libthai-data libthai0 libtiff5 libtiff5-dev libtiffxx5 libtinfo-dev libunistring0 libvorbis0a libvorbisenc2 libwrap0 libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-dri2-0 libxcb-glx0 libxcb-render0 libxcb-render0-dev libxcb-shm0 libxcb-shm0-dev libxcb1 libxcb1-dev libxcomposite1 libxcursor1 libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxfont1 libxft-dev libxft2 libxi6 libxinerama1 libxkbfile1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml2 libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender-dev libxrender1 libxss-dev libxss1 libxt-dev libxt6 libxtst6 libxxf86vm1 luatex m4 man-db mime-support mpack openjdk-7-jdk openjdk-7-jre openjdk-7-jre-headless openjdk-7-jre-lib openssl otf-freefont pkg-config po-debconf poppler-data preview-latex-style python python-minimal python2.7 python2.7-minimal python3 python3-minimal python3.3 python3.3-minimal shared-mime-info tcl8.5 tcl8.5-dev tcl8.5-lib tex-common texi2html texinfo texlive-base texlive-binaries texlive-extra-utils texlive-fonts-extra texlive-fonts-recommended texlive-generic-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures tk8.5 tk8.5-dev tk8.5-lib ttf-dejavu-core ttf-freefont tzdata-java ucf x11-common x11-xkb-utils x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-render-dev x11proto-scrnsaver-dev x11proto-xext-dev xauth xdg-utils xfonts-base xfonts-encodings xfonts-utils xkb-data xorg-sgml-doctools xserver-common xtrans-dev xvfb zlib1g-dev 0 upgraded, 280 newly installed, 0 to remove and 0 not upgraded. Need to get 371 MB of archives. After this operation, 981 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libexpat1 libffi6 libmagic1 libpopt0 libpython3.3-minimal mime-support libpython3.3-stdlib python3.3-minimal libasprintf0c2 libglib2.0-0 libpipeline1 libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxext6 libxml2 libxmuu1 groff-base bsdmainutils man-db ucf fonts-dejavu-core ttf-dejavu-core fonts-freefont-ttf ttf-freefont fontconfig-config fonts-droid fonts-junicode fonts-lato libasound2-data libasound2 libasyncns0 libatk1.0-data libatk1.0-0 libgtk2.0-common libfreetype6 libfontconfig1 libpixman-1-0 libxcb-render0 libxcb-shm0 libxrender1 libcairo2 libavahi-common-data libavahi-common3 libavahi-client3 libcups2 libjpeg-turbo8 libjpeg8 libjasper1 libjbig0 libtiff5 libgdk-pixbuf2.0-common libgdk-pixbuf2.0-0 libthai-data libdatrie1 libthai0 fontconfig libpango-1.0-0 libgraphite2-3 libharfbuzz0a libpangoft2-1.0-0 libpangocairo-1.0-0 libxcomposite1 libxfixes3 libxcursor1 libxdamage1 libxi6 libxinerama1 libxrandr2 shared-mime-info libgtk2.0-0 openjdk-7-jre-lib openssl ca-certificates libnspr4 libnss3 ca-certificates-java tzdata-java java-common liblcms2-2 libnss3-1d libpcsclite1 openjdk-7-jre-headless default-jre-headless libgif4 libogg0 libflac8 libvorbis0a libvorbisenc2 libsndfile1 libwrap0 libpulse0 x11-common libxtst6 libglapi-mesa libx11-xcb1 libxcb-dri2-0 libxcb-glx0 libxxf86vm1 libgl1-mesa-glx openjdk-7-jre default-jre libatk-wrapper-java libatk-wrapper-java-jni libcairo-gobject2 liblzo2-2 libcairo-script-interpreter2 libcroco3 libcupsfilters1 libcupsimage2 libelfg0 libfontenc1 libgfortran3 libicu48 libharfbuzz-icu0 libice6 libxft2 libpangoxft-1.0-0 libpaper1 libpcrecpp0 libpoppler43 libsigsegv2 libsm6 libtiffxx5 libunistring0 libxt6 libxmu6 libxpm4 libxaw7 libxfont1 libxkbfile1 libxss1 poppler-data libpython2.7-minimal python2.7-minimal tcl8.5-lib tk8.5-lib libjbig-dev python3.3 python3-minimal libpython3-stdlib python3 dh-python file xkb-data gettext-base libgirepository-1.0-1 gir1.2-glib-2.0 libglib2.0-data xauth m4 libbison-dev bison gettext intltool-debian po-debconf apparmor-easyprof dh-apparmor debhelper openjdk-7-jdk default-jdk fonts-cabin fonts-comfortaa fonts-dejavu-extra fonts-font-awesome fonts-freefont-otf fonts-gfs-artemisia fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga fonts-gfs-solomos fonts-inconsolata fonts-linuxlibertine fonts-oflb-asana-math fonts-sil-gentium fonts-sil-gentium-basic libgfortran-4.8-dev gfortran-4.8 gfortran gir1.2-freedesktop gir1.2-pango-1.0 libblas3 libblas-dev libbz2-dev libexpat1-dev zlib1g-dev libfreetype6-dev pkg-config libfontconfig1-dev xorg-sgml-doctools x11proto-core-dev libxau-dev libxdmcp-dev x11proto-input-dev x11proto-kb-dev xtrans-dev libpthread-stubs0-dev libxcb1-dev libx11-dev x11proto-render-dev libxrender-dev libpng12-dev libice-dev libsm-dev libpixman-1-dev libxcb-render0-dev libxcb-shm0-dev x11proto-xext-dev libxext-dev libpython2.7-stdlib python2.7 python-minimal libpython-stdlib python libglib2.0-bin libpcre3-dev libglib2.0-dev libcairo2-dev libijs-0.35 libjbig2dec0 libgs9-common libgs9 libharfbuzz-dev libintl-perl libjpeg-turbo8-dev libjpeg8-dev libjpeg-dev libkpathsea6 liblapack3 liblapack-dev libtinfo-dev libncurses5-dev libxft-dev libpango1.0-dev libpaper-utils libptexenc1 libreadline6-dev libreadline-dev libtext-unidecode-perl liblzma-dev libtiff5-dev libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-libxml-perl x11proto-scrnsaver-dev libxss-dev libxt-dev tex-common luatex mpack otf-freefont preview-latex-style tcl8.5 tcl8.5-dev texi2html texinfo xdg-utils texlive-binaries texlive-base texlive-latex-base texlive-extra-utils fonts-stix texlive-fonts-extra texlive-fonts-recommended texlive-generic-recommended texlive-latex-recommended texlive-pictures texlive-latex-extra tk8.5 tk8.5-dev x11-xkb-utils xfonts-encodings xfonts-utils xfonts-base xserver-common xvfb Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ trusty/main libexpat1 powerpc 2.1.0-4 [132 kB] Get:2 http://ftpmaster.internal/ubuntu/ trusty/main libffi6 powerpc 3.0.13-4 [20.5 kB] Get:3 http://ftpmaster.internal/ubuntu/ trusty/main libmagic1 powerpc 5.11-2ubuntu4 [170 kB] Get:4 http://ftpmaster.internal/ubuntu/ trusty/main libpopt0 powerpc 1.16-7ubuntu3 [29.3 kB] Get:5 http://ftpmaster.internal/ubuntu/ trusty/main libpython3.3-minimal powerpc 3.3.2-7ubuntu3 [621 kB] Get:6 http://ftpmaster.internal/ubuntu/ trusty/main mime-support all 3.54ubuntu1 [31.7 kB] Get:7 http://ftpmaster.internal/ubuntu/ trusty/main libpython3.3-stdlib powerpc 3.3.2-7ubuntu3 [2738 kB] Get:8 http://ftpmaster.internal/ubuntu/ trusty/main python3.3-minimal powerpc 3.3.2-7ubuntu3 [1868 kB] Get:9 http://ftpmaster.internal/ubuntu/ trusty/main libasprintf0c2 powerpc 0.18.3.1-1ubuntu1 [7346 B] Get:10 http://ftpmaster.internal/ubuntu/ trusty/main libglib2.0-0 powerpc 2.38.1-1 [882 kB] Get:11 http://ftpmaster.internal/ubuntu/ trusty/main libpipeline1 powerpc 1.2.4-1 [26.2 kB] Get:12 http://ftpmaster.internal/ubuntu/ trusty/main libxau6 powerpc 1:1.0.8-1 [8284 B] Get:13 http://ftpmaster.internal/ubuntu/ trusty/main libxdmcp6 powerpc 1:1.1.1-1 [12.6 kB] Get:14 http://ftpmaster.internal/ubuntu/ trusty/main libxcb1 powerpc 1.9.1-3ubuntu1 [40.7 kB] Get:15 http://ftpmaster.internal/ubuntu/ trusty/main libx11-data all 2:1.6.1-1ubuntu2 [179 kB] Get:16 http://ftpmaster.internal/ubuntu/ trusty/main libx11-6 powerpc 2:1.6.1-1ubuntu2 [751 kB] Get:17 http://ftpmaster.internal/ubuntu/ trusty/main libxext6 powerpc 2:1.3.2-1 [31.8 kB] Get:18 http://ftpmaster.internal/ubuntu/ trusty/main libxml2 powerpc 2.9.1+dfsg1-3ubuntu2 [645 kB] Get:19 http://ftpmaster.internal/ubuntu/ trusty/main libxmuu1 powerpc 2:1.1.1-1 [10.9 kB] Get:20 http://ftpmaster.internal/ubuntu/ trusty/main groff-base powerpc 1.22.2-3 [705 kB] Get:21 http://ftpmaster.internal/ubuntu/ trusty/main bsdmainutils powerpc 9.0.5ubuntu1 [202 kB] Get:22 http://ftpmaster.internal/ubuntu/ trusty/main man-db powerpc 2.6.5-2 [686 kB] Get:23 http://ftpmaster.internal/ubuntu/ trusty/main ucf all 3.0027+nmu1 [56.3 kB] Get:24 http://ftpmaster.internal/ubuntu/ trusty/main fonts-dejavu-core all 2.33+svn2514-3ubuntu1 [1019 kB] Get:25 http://ftpmaster.internal/ubuntu/ trusty/main ttf-dejavu-core all 2.33+svn2514-3ubuntu1 [2964 B] Get:26 http://ftpmaster.internal/ubuntu/ trusty/main fonts-freefont-ttf all 20120503-1 [5909 kB] Get:27 http://ftpmaster.internal/ubuntu/ trusty/universe ttf-freefont all 20120503-1 [1690 B] Get:28 http://ftpmaster.internal/ubuntu/ trusty/main fontconfig-config all 2.10.93-0ubuntu1 [50.5 kB] Get:29 http://ftpmaster.internal/ubuntu/ trusty/universe fonts-droid all 1:4.3-1 [3038 kB] Get:30 http://ftpmaster.internal/ubuntu/ trusty/universe fonts-junicode all 0.7.8-1 [1237 kB] Get:31 http://ftpmaster.internal/ubuntu/ trusty/universe fonts-lato all 1.104-4 [243 kB] Get:32 http://ftpmaster.internal/ubuntu/ trusty/main libasound2-data all 1.0.27.2-1ubuntu6 [30.9 kB] Get:33 http://ftpmaster.internal/ubuntu/ trusty/main libasound2 powerpc 1.0.27.2-1ubuntu6 [390 kB] Get:34 http://ftpmaster.internal/ubuntu/ trusty/main libasyncns0 powerpc 0.8-4ubuntu1 [13.0 kB] Get:35 http://ftpmaster.internal/ubuntu/ trusty/main libatk1.0-data all 2.10.0-2 [13.7 kB] Get:36 http://ftpmaster.internal/ubuntu/ trusty/main libatk1.0-0 powerpc 2.10.0-2 [45.6 kB] Get:37 http://ftpmaster.internal/ubuntu/ trusty/main libgtk2.0-common all 2.24.21-1ubuntu1 [121 kB] Get:38 http://ftpmaster.internal/ubuntu/ trusty/main libfreetype6 powerpc 2.4.12-0ubuntu1 [342 kB] Get:39 http://ftpmaster.internal/ubuntu/ trusty/main libfontconfig1 powerpc 2.10.93-0ubuntu1 [143 kB] Get:40 http://ftpmaster.internal/ubuntu/ trusty/main libpixman-1-0 powerpc 0.30.2-1 [193 kB] Get:41 http://ftpmaster.internal/ubuntu/ trusty/main libxcb-render0 powerpc 1.9.1-3ubuntu1 [12.2 kB] Get:42 http://ftpmaster.internal/ubuntu/ trusty/main libxcb-shm0 powerpc 1.9.1-3ubuntu1 [5552 B] Get:43 http://ftpmaster.internal/ubuntu/ trusty/main libxrender1 powerpc 1:0.9.8-1 [20.1 kB] Get:44 http://ftpmaster.internal/ubuntu/ trusty/main libcairo2 powerpc 1.12.16-0ubuntu2 [633 kB] Get:45 http://ftpmaster.internal/ubuntu/ trusty/main libavahi-common-data powerpc 0.6.31-2ubuntu4 [22.3 kB] Get:46 http://ftpmaster.internal/ubuntu/ trusty/main libavahi-common3 powerpc 0.6.31-2ubuntu4 [25.8 kB] Get:47 http://ftpmaster.internal/ubuntu/ trusty/main libavahi-client3 powerpc 0.6.31-2ubuntu4 [28.3 kB] Get:48 http://ftpmaster.internal/ubuntu/ trusty/main libcups2 powerpc 1.7.0~rc1-0ubuntu5 [214 kB] Get:49 http://ftpmaster.internal/ubuntu/ trusty/main libjpeg-turbo8 powerpc 1.3.0-0ubuntu1 [110 kB] Get:50 http://ftpmaster.internal/ubuntu/ trusty/main libjpeg8 powerpc 8c-2ubuntu8 [2200 B] Get:51 http://ftpmaster.internal/ubuntu/ trusty/main libjasper1 powerpc 1.900.1-14 [150 kB] Get:52 http://ftpmaster.internal/ubuntu/ trusty/main libjbig0 powerpc 2.0-2ubuntu1 [29.0 kB] Get:53 http://ftpmaster.internal/ubuntu/ trusty/main libtiff5 powerpc 4.0.2-4ubuntu3 [172 kB] Get:54 http://ftpmaster.internal/ubuntu/ trusty/main libgdk-pixbuf2.0-common all 2.28.1-1ubuntu2 [8006 B] Get:55 http://ftpmaster.internal/ubuntu/ trusty/main libgdk-pixbuf2.0-0 powerpc 2.28.1-1ubuntu2 [143 kB] Get:56 http://ftpmaster.internal/ubuntu/ trusty/main libthai-data all 0.1.19-2 [130 kB] Get:57 http://ftpmaster.internal/ubuntu/ trusty/main libdatrie1 powerpc 0.2.7.1-1 [15.1 kB] Get:58 http://ftpmaster.internal/ubuntu/ trusty/main libthai0 powerpc 0.1.19-2 [15.6 kB] Get:59 http://ftpmaster.internal/ubuntu/ trusty/main fontconfig powerpc 2.10.93-0ubuntu1 [181 kB] Get:60 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libpango-1.0-0 powerpc 1.36.0-1ubuntu1 [139 kB] Get:61 http://ftpmaster.internal/ubuntu/ trusty/main libgraphite2-3 powerpc 1.2.3-1 [56.4 kB] Get:62 http://ftpmaster.internal/ubuntu/ trusty/main libharfbuzz0a powerpc 0.9.19-1 [143 kB] Get:63 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libpangoft2-1.0-0 powerpc 1.36.0-1ubuntu1 [29.5 kB] Get:64 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libpangocairo-1.0-0 powerpc 1.36.0-1ubuntu1 [18.5 kB] Get:65 http://ftpmaster.internal/ubuntu/ trusty/main libxcomposite1 powerpc 1:0.4.4-1 [7384 B] Get:66 http://ftpmaster.internal/ubuntu/ trusty/main libxfixes3 powerpc 1:5.0.1-1ubuntu1 [11.2 kB] Get:67 http://ftpmaster.internal/ubuntu/ trusty/main libxcursor1 powerpc 1:1.1.14-1 [22.1 kB] Get:68 http://ftpmaster.internal/ubuntu/ trusty/main libxdamage1 powerpc 1:1.1.4-1ubuntu1 [7290 B] Get:69 http://ftpmaster.internal/ubuntu/ trusty/main libxi6 powerpc 2:1.7.1.901-1ubuntu1 [33.0 kB] Get:70 http://ftpmaster.internal/ubuntu/ trusty/main libxinerama1 powerpc 2:1.1.3-1 [7640 B] Get:71 http://ftpmaster.internal/ubuntu/ trusty/main libxrandr2 powerpc 2:1.4.0-1ubuntu2 [18.3 kB] Get:72 http://ftpmaster.internal/ubuntu/ trusty/main shared-mime-info powerpc 1.1-0ubuntu5 [410 kB] Get:73 http://ftpmaster.internal/ubuntu/ trusty/main libgtk2.0-0 powerpc 2.24.21-1ubuntu1 [1492 kB] Get:74 http://ftpmaster.internal/ubuntu/ trusty/main openjdk-7-jre-lib all 7u25-2.3.12-4ubuntu3 [5571 kB] Get:75 http://ftpmaster.internal/ubuntu/ trusty/main openssl powerpc 1.0.1e-3ubuntu1 [522 kB] Get:76 http://ftpmaster.internal/ubuntu/ trusty/main ca-certificates all 20130906 [196 kB] Get:77 http://ftpmaster.internal/ubuntu/ trusty/main libnspr4 powerpc 2:4.9.5-1ubuntu1 [126 kB] Get:78 http://ftpmaster.internal/ubuntu/ trusty/main libnss3 powerpc 2:3.15.1-1ubuntu1 [930 kB] Get:79 http://ftpmaster.internal/ubuntu/ trusty/main ca-certificates-java all 20130815 [13.7 kB] Get:80 http://ftpmaster.internal/ubuntu/ trusty/main tzdata-java all 2013g-0ubuntu1 [139 kB] Get:81 http://ftpmaster.internal/ubuntu/ trusty/main java-common all 0.48ubuntu2 [134 kB] Get:82 http://ftpmaster.internal/ubuntu/ trusty/main liblcms2-2 powerpc 2.5-0ubuntu1 [162 kB] Get:83 http://ftpmaster.internal/ubuntu/ trusty/main libnss3-1d powerpc 2:3.15.1-1ubuntu1 [12.4 kB] Get:84 http://ftpmaster.internal/ubuntu/ trusty/main libpcsclite1 powerpc 1.8.6-3ubuntu1b1 [23.6 kB] Get:85 http://ftpmaster.internal/ubuntu/ trusty/main openjdk-7-jre-headless powerpc 7u25-2.3.12-4ubuntu3 [33.3 MB] Get:86 http://ftpmaster.internal/ubuntu/ trusty/main default-jre-headless powerpc 1:1.7-48ubuntu2 [3260 B] Get:87 http://ftpmaster.internal/ubuntu/ trusty/main libgif4 powerpc 4.1.6-10ubuntu1 [30.0 kB] Get:88 http://ftpmaster.internal/ubuntu/ trusty/main libogg0 powerpc 1.3.1-1 [17.6 kB] Get:89 http://ftpmaster.internal/ubuntu/ trusty/main libflac8 powerpc 1.3.0-2 [99.5 kB] Get:90 http://ftpmaster.internal/ubuntu/ trusty/main libvorbis0a powerpc 1.3.2-1.3 [105 kB] Get:91 http://ftpmaster.internal/ubuntu/ trusty/main libvorbisenc2 powerpc 1.3.2-1.3 [117 kB] Get:92 http://ftpmaster.internal/ubuntu/ trusty/main libsndfile1 powerpc 1.0.25-7ubuntu1 [181 kB] Get:93 http://ftpmaster.internal/ubuntu/ trusty/main libwrap0 powerpc 7.6.q-24 [49.0 kB] Get:94 http://ftpmaster.internal/ubuntu/ trusty/main libpulse0 powerpc 1:4.0-0ubuntu6 [272 kB] Get:95 http://ftpmaster.internal/ubuntu/ trusty/main x11-common all 1:7.7+1ubuntu6 [58.6 kB] Get:96 http://ftpmaster.internal/ubuntu/ trusty/main libxtst6 powerpc 2:1.2.2-1 [13.9 kB] Get:97 http://ftpmaster.internal/ubuntu/ trusty/main libglapi-mesa powerpc 9.2.2-1ubuntu1 [29.3 kB] Get:98 http://ftpmaster.internal/ubuntu/ trusty/main libx11-xcb1 powerpc 2:1.6.1-1ubuntu2 [10.9 kB] Get:99 http://ftpmaster.internal/ubuntu/ trusty/main libxcb-dri2-0 powerpc 1.9.1-3ubuntu1 [7246 B] Get:100 http://ftpmaster.internal/ubuntu/ trusty/main libxcb-glx0 powerpc 1.9.1-3ubuntu1 [21.8 kB] Get:101 http://ftpmaster.internal/ubuntu/ trusty/main libxxf86vm1 powerpc 1:1.1.3-1 [11.8 kB] Get:102 http://ftpmaster.internal/ubuntu/ trusty/main libgl1-mesa-glx powerpc 9.2.2-1ubuntu1 [93.8 kB] Get:103 http://ftpmaster.internal/ubuntu/ trusty/main openjdk-7-jre powerpc 7u25-2.3.12-4ubuntu3 [223 kB] Get:104 http://ftpmaster.internal/ubuntu/ trusty/main default-jre powerpc 1:1.7-48ubuntu2 [884 B] Get:105 http://ftpmaster.internal/ubuntu/ trusty/main libatk-wrapper-java all 0.30.4-0ubuntu4 [29.8 kB] Get:106 http://ftpmaster.internal/ubuntu/ trusty/main libatk-wrapper-java-jni powerpc 0.30.4-0ubuntu4 [30.7 kB] Get:107 http://ftpmaster.internal/ubuntu/ trusty/main libcairo-gobject2 powerpc 1.12.16-0ubuntu2 [19.5 kB] Get:108 http://ftpmaster.internal/ubuntu/ trusty/main liblzo2-2 powerpc 2.06-1.2 [55.4 kB] Get:109 http://ftpmaster.internal/ubuntu/ trusty/main libcairo-script-interpreter2 powerpc 1.12.16-0ubuntu2 [60.1 kB] Get:110 http://ftpmaster.internal/ubuntu/ trusty/main libcroco3 powerpc 0.6.8-2 [70.2 kB] Get:111 http://ftpmaster.internal/ubuntu/ trusty/main libcupsfilters1 powerpc 1.0.40-0ubuntu2 [83.9 kB] Get:112 http://ftpmaster.internal/ubuntu/ trusty/main libcupsimage2 powerpc 1.7.0~rc1-0ubuntu5 [17.9 kB] Get:113 http://ftpmaster.internal/ubuntu/ trusty/main libelfg0 powerpc 0.8.13-4~1 [42.0 kB] Get:114 http://ftpmaster.internal/ubuntu/ trusty/main libfontenc1 powerpc 1:1.1.2-1 [15.0 kB] Get:115 http://ftpmaster.internal/ubuntu/ trusty/main libgfortran3 powerpc 4.8.2-1ubuntu2 [279 kB] Get:116 http://ftpmaster.internal/ubuntu/ trusty/main libicu48 powerpc 4.8.1.1-12ubuntu2 [4585 kB] Get:117 http://ftpmaster.internal/ubuntu/ trusty/main libharfbuzz-icu0 powerpc 0.9.19-1 [5724 B] Get:118 http://ftpmaster.internal/ubuntu/ trusty/main libice6 powerpc 2:1.0.8-2 [43.9 kB] Get:119 http://ftpmaster.internal/ubuntu/ trusty/main libxft2 powerpc 2.3.1-1 [42.3 kB] Get:120 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libpangoxft-1.0-0 powerpc 1.36.0-1ubuntu1 [13.5 kB] Get:121 http://ftpmaster.internal/ubuntu/ trusty/main libpaper1 powerpc 1.1.24+nmu2ubuntu2 [14.2 kB] Get:122 http://ftpmaster.internal/ubuntu/ trusty/main libpcrecpp0 powerpc 1:8.31-2 [17.4 kB] Get:123 http://ftpmaster.internal/ubuntu/ trusty/main libpoppler43 powerpc 0.24.1-0ubuntu1 [901 kB] Get:124 http://ftpmaster.internal/ubuntu/ trusty/main libsigsegv2 powerpc 2.10-2 [14.8 kB] Get:125 http://ftpmaster.internal/ubuntu/ trusty/main libsm6 powerpc 2:1.2.1-2 [17.0 kB] Get:126 http://ftpmaster.internal/ubuntu/ trusty/main libtiffxx5 powerpc 4.0.2-4ubuntu3 [7120 B] Get:127 http://ftpmaster.internal/ubuntu/ trusty/main libunistring0 powerpc 0.9.3-5ubuntu1 [414 kB] Get:128 http://ftpmaster.internal/ubuntu/ trusty/main libxt6 powerpc 1:1.1.4-1 [174 kB] Get:129 http://ftpmaster.internal/ubuntu/ trusty/main libxmu6 powerpc 2:1.1.1-1 [51.6 kB] Get:130 http://ftpmaster.internal/ubuntu/ trusty/main libxpm4 powerpc 1:3.5.10-1 [37.5 kB] Get:131 http://ftpmaster.internal/ubuntu/ trusty/main libxaw7 powerpc 2:1.0.11-1 [194 kB] Get:132 http://ftpmaster.internal/ubuntu/ trusty/main libxfont1 powerpc 1:1.4.6-1 [132 kB] Get:133 http://ftpmaster.internal/ubuntu/ trusty/main libxkbfile1 powerpc 1:1.0.8-1 [74.7 kB] Get:134 http://ftpmaster.internal/ubuntu/ trusty/main libxss1 powerpc 1:1.2.2-1 [8298 B] Get:135 http://ftpmaster.internal/ubuntu/ trusty/main poppler-data all 0.4.6-4 [1479 kB] Get:136 http://ftpmaster.internal/ubuntu/ trusty/main libpython2.7-minimal powerpc 2.7.5-8ubuntu3 [480 kB] Get:137 http://ftpmaster.internal/ubuntu/ trusty/main python2.7-minimal powerpc 2.7.5-8ubuntu3 [1548 kB] Get:138 http://ftpmaster.internal/ubuntu/ trusty/main tcl8.5-lib powerpc 8.5.13-1ubuntu4 [533 kB] Get:139 http://ftpmaster.internal/ubuntu/ trusty/main tk8.5-lib powerpc 8.5.11-2ubuntu4 [555 kB] Get:140 http://ftpmaster.internal/ubuntu/ trusty/main libjbig-dev powerpc 2.0-2ubuntu1 [6580 B] Get:141 http://ftpmaster.internal/ubuntu/ trusty/main python3.3 powerpc 3.3.2-7ubuntu3 [128 kB] Get:142 http://ftpmaster.internal/ubuntu/ trusty/main python3-minimal powerpc 3.3.2-14ubuntu1 [27.5 kB] Get:143 http://ftpmaster.internal/ubuntu/ trusty/main libpython3-stdlib powerpc 3.3.2-14ubuntu1 [8150 B] Get:144 http://ftpmaster.internal/ubuntu/ trusty/main python3 powerpc 3.3.2-14ubuntu1 [9172 B] Get:145 http://ftpmaster.internal/ubuntu/ trusty-proposed/main dh-python all 1.20131021-1ubuntu1 [58.5 kB] Get:146 http://ftpmaster.internal/ubuntu/ trusty/main file powerpc 5.11-2ubuntu4 [18.2 kB] Get:147 http://ftpmaster.internal/ubuntu/ trusty/main xkb-data all 2.5.1-3ubuntu2 [300 kB] Get:148 http://ftpmaster.internal/ubuntu/ trusty/main gettext-base powerpc 0.18.3.1-1ubuntu1 [64.6 kB] Get:149 http://ftpmaster.internal/ubuntu/ trusty/main libgirepository-1.0-1 powerpc 1.38.0-0ubuntu1 [101 kB] Get:150 http://ftpmaster.internal/ubuntu/ trusty/main gir1.2-glib-2.0 powerpc 1.38.0-0ubuntu1 [172 kB] Get:151 http://ftpmaster.internal/ubuntu/ trusty/main libglib2.0-data all 2.38.1-1 [106 kB] Get:152 http://ftpmaster.internal/ubuntu/ trusty/main xauth powerpc 1:1.0.7-1ubuntu1 [25.1 kB] Get:153 http://ftpmaster.internal/ubuntu/ trusty/main m4 powerpc 1.4.17-1 [197 kB] Get:154 http://ftpmaster.internal/ubuntu/ trusty/main libbison-dev powerpc 2:2.7.1.dfsg-1 [308 kB] Get:155 http://ftpmaster.internal/ubuntu/ trusty/main bison powerpc 2:2.7.1.dfsg-1 [291 kB] Get:156 http://ftpmaster.internal/ubuntu/ trusty/main gettext powerpc 0.18.3.1-1ubuntu1 [1014 kB] Get:157 http://ftpmaster.internal/ubuntu/ trusty/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:158 http://ftpmaster.internal/ubuntu/ trusty/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:159 http://ftpmaster.internal/ubuntu/ trusty/main apparmor-easyprof all 2.8.0-0ubuntu32 [23.3 kB] Get:160 http://ftpmaster.internal/ubuntu/ trusty/main dh-apparmor all 2.8.0-0ubuntu32 [7830 B] Get:161 http://ftpmaster.internal/ubuntu/ trusty/main debhelper all 9.20130921ubuntu1 [635 kB] Get:162 http://ftpmaster.internal/ubuntu/ trusty/main openjdk-7-jdk powerpc 7u25-2.3.12-4ubuntu3 [14.0 MB] Get:163 http://ftpmaster.internal/ubuntu/ trusty/main default-jdk powerpc 1:1.7-48ubuntu2 [880 B] Get:164 http://ftpmaster.internal/ubuntu/ trusty/universe fonts-cabin all 1.5-2 [140 kB] Get:165 http://ftpmaster.internal/ubuntu/ trusty/universe fonts-comfortaa all 2.003-1 [131 kB] Get:166 http://ftpmaster.internal/ubuntu/ trusty/main fonts-dejavu-extra all 2.33+svn2514-3ubuntu1 [1726 kB] Get:167 http://ftpmaster.internal/ubuntu/ trusty/universe fonts-font-awesome all 3.2.1~dfsg-2 [274 kB] Get:168 http://ftpmaster.internal/ubuntu/ trusty/universe fonts-freefont-otf all 20120503-1 [4316 kB] Get:169 http://ftpmaster.internal/ubuntu/ trusty/universe fonts-gfs-artemisia all 1.1-5 [260 kB] Get:170 http://ftpmaster.internal/ubuntu/ trusty/universe fonts-gfs-complutum all 1.1-5 [48.4 kB] Get:171 http://ftpmaster.internal/ubuntu/ trusty/universe fonts-gfs-didot all 1.1-5 [372 kB] Get:172 http://ftpmaster.internal/ubuntu/ trusty/universe fonts-gfs-neohellenic all 1.1-4 [283 kB] Get:173 http://ftpmaster.internal/ubuntu/ trusty/universe fonts-gfs-olga all 1.1-3 [36.6 kB] Get:174 http://ftpmaster.internal/ubuntu/ trusty/universe fonts-gfs-solomos all 1.1-5 [40.7 kB] Get:175 http://ftpmaster.internal/ubuntu/ trusty/universe fonts-inconsolata all 001.010-4 [66.0 kB] Get:176 http://ftpmaster.internal/ubuntu/ trusty/universe fonts-linuxlibertine all 5.3.0-2 [1688 kB] Get:177 http://ftpmaster.internal/ubuntu/ trusty/universe fonts-oflb-asana-math all 000.907-4 [297 kB] Get:178 http://ftpmaster.internal/ubuntu/ trusty/universe fonts-sil-gentium all 20081126:1.02-12 [681 kB] Get:179 http://ftpmaster.internal/ubuntu/ trusty/universe fonts-sil-gentium-basic all 1.1-5 [867 kB] Get:180 http://ftpmaster.internal/ubuntu/ trusty/main libgfortran-4.8-dev powerpc 4.8.2-1ubuntu2 [372 kB] Get:181 http://ftpmaster.internal/ubuntu/ trusty/main gfortran-4.8 powerpc 4.8.2-1ubuntu2 [6504 kB] Get:182 http://ftpmaster.internal/ubuntu/ trusty/main gfortran powerpc 4:4.8.1-2ubuntu3 [1208 B] Get:183 http://ftpmaster.internal/ubuntu/ trusty/main gir1.2-freedesktop powerpc 1.38.0-0ubuntu1 [6220 B] Get:184 http://ftpmaster.internal/ubuntu/ trusty-proposed/main gir1.2-pango-1.0 powerpc 1.36.0-1ubuntu1 [18.6 kB] Get:185 http://ftpmaster.internal/ubuntu/ trusty/main libblas3 powerpc 1.2.20110419-7 [183 kB] Get:186 http://ftpmaster.internal/ubuntu/ trusty/main libblas-dev powerpc 1.2.20110419-7 [205 kB] Get:187 http://ftpmaster.internal/ubuntu/ trusty/main libbz2-dev powerpc 1.0.6-5 [36.1 kB] Get:188 http://ftpmaster.internal/ubuntu/ trusty/main libexpat1-dev powerpc 2.1.0-4 [242 kB] Get:189 http://ftpmaster.internal/ubuntu/ trusty/main zlib1g-dev powerpc 1:1.2.8.dfsg-1ubuntu1 [184 kB] Get:190 http://ftpmaster.internal/ubuntu/ trusty/main libfreetype6-dev powerpc 2.4.12-0ubuntu1 [801 kB] Get:191 http://ftpmaster.internal/ubuntu/ trusty/main pkg-config powerpc 0.26-1ubuntu4 [40.6 kB] Get:192 http://ftpmaster.internal/ubuntu/ trusty/main libfontconfig1-dev powerpc 2.10.93-0ubuntu1 [715 kB] Get:193 http://ftpmaster.internal/ubuntu/ trusty/main xorg-sgml-doctools all 1:1.11-1 [12.9 kB] Get:194 http://ftpmaster.internal/ubuntu/ trusty/main x11proto-core-dev all 7.0.24-1 [748 kB] Get:195 http://ftpmaster.internal/ubuntu/ trusty/main libxau-dev powerpc 1:1.0.8-1 [10.1 kB] Get:196 http://ftpmaster.internal/ubuntu/ trusty/main libxdmcp-dev powerpc 1:1.1.1-1 [26.3 kB] Get:197 http://ftpmaster.internal/ubuntu/ trusty/main x11proto-input-dev all 2.3-1 [139 kB] Get:198 http://ftpmaster.internal/ubuntu/ trusty/main x11proto-kb-dev all 1.0.6-2 [269 kB] Get:199 http://ftpmaster.internal/ubuntu/ trusty/main xtrans-dev all 1.2.7-1 [84.3 kB] Get:200 http://ftpmaster.internal/ubuntu/ trusty/main libpthread-stubs0-dev powerpc 0.3-4 [4068 B] Get:201 http://ftpmaster.internal/ubuntu/ trusty/main libxcb1-dev powerpc 1.9.1-3ubuntu1 [94.3 kB] Get:202 http://ftpmaster.internal/ubuntu/ trusty/main libx11-dev powerpc 2:1.6.1-1ubuntu2 [871 kB] Get:203 http://ftpmaster.internal/ubuntu/ trusty/main x11proto-render-dev all 2:0.11.1-2 [20.1 kB] Get:204 http://ftpmaster.internal/ubuntu/ trusty/main libxrender-dev powerpc 1:0.9.8-1 [26.9 kB] Get:205 http://ftpmaster.internal/ubuntu/ trusty/main libpng12-dev powerpc 1.2.49-4ubuntu1 [207 kB] Get:206 http://ftpmaster.internal/ubuntu/ trusty/main libice-dev powerpc 2:1.0.8-2 [54.6 kB] Get:207 http://ftpmaster.internal/ubuntu/ trusty/main libsm-dev powerpc 2:1.2.1-2 [18.5 kB] Get:208 http://ftpmaster.internal/ubuntu/ trusty/main libpixman-1-dev powerpc 0.30.2-1 [227 kB] Get:209 http://ftpmaster.internal/ubuntu/ trusty/main libxcb-render0-dev powerpc 1.9.1-3ubuntu1 [19.7 kB] Get:210 http://ftpmaster.internal/ubuntu/ trusty/main libxcb-shm0-dev powerpc 1.9.1-3ubuntu1 [6786 B] Get:211 http://ftpmaster.internal/ubuntu/ trusty/main x11proto-xext-dev all 7.2.1-1 [265 kB] Get:212 http://ftpmaster.internal/ubuntu/ trusty/main libxext-dev powerpc 2:1.3.2-1 [90.1 kB] Get:213 http://ftpmaster.internal/ubuntu/ trusty/main libpython2.7-stdlib powerpc 2.7.5-8ubuntu3 [2375 kB] Get:214 http://ftpmaster.internal/ubuntu/ trusty/main python2.7 powerpc 2.7.5-8ubuntu3 [192 kB] Get:215 http://ftpmaster.internal/ubuntu/ trusty/main python-minimal powerpc 2.7.5-5ubuntu1 [31.4 kB] Get:216 http://ftpmaster.internal/ubuntu/ trusty/main libpython-stdlib powerpc 2.7.5-5ubuntu1 [7772 B] Get:217 http://ftpmaster.internal/ubuntu/ trusty/main python powerpc 2.7.5-5ubuntu1 [169 kB] Get:218 http://ftpmaster.internal/ubuntu/ trusty/main libglib2.0-bin powerpc 2.38.1-1 [32.7 kB] Get:219 http://ftpmaster.internal/ubuntu/ trusty/main libpcre3-dev powerpc 1:8.31-2 [269 kB] Get:220 http://ftpmaster.internal/ubuntu/ trusty/main libglib2.0-dev powerpc 2.38.1-1 [1203 kB] Get:221 http://ftpmaster.internal/ubuntu/ trusty/main libcairo2-dev powerpc 1.12.16-0ubuntu2 [773 kB] Get:222 http://ftpmaster.internal/ubuntu/ trusty/main libijs-0.35 powerpc 0.35-8build1 [15.9 kB] Get:223 http://ftpmaster.internal/ubuntu/ trusty/main libjbig2dec0 powerpc 0.11+20120125-1ubuntu1 [47.1 kB] Get:224 http://ftpmaster.internal/ubuntu/ trusty/main libgs9-common all 9.10~dfsg-0ubuntu2 [2290 kB] Get:225 http://ftpmaster.internal/ubuntu/ trusty/main libgs9 powerpc 9.10~dfsg-0ubuntu2 [2446 kB] Get:226 http://ftpmaster.internal/ubuntu/ trusty/main libharfbuzz-dev powerpc 0.9.19-1 [16.2 kB] Get:227 http://ftpmaster.internal/ubuntu/ trusty/main libintl-perl all 1.23-1build1 [1204 kB] Get:228 http://ftpmaster.internal/ubuntu/ trusty/main libjpeg-turbo8-dev powerpc 1.3.0-0ubuntu1 [366 kB] Get:229 http://ftpmaster.internal/ubuntu/ trusty/main libjpeg8-dev powerpc 8c-2ubuntu8 [1550 B] Get:230 http://ftpmaster.internal/ubuntu/ trusty/main libjpeg-dev powerpc 8c-2ubuntu8 [1550 B] Get:231 http://ftpmaster.internal/ubuntu/ trusty/main libkpathsea6 powerpc 2013.20130729.30972-2 [73.0 kB] Get:232 http://ftpmaster.internal/ubuntu/ trusty/main liblapack3 powerpc 3.4.2+dfsg-4 [2408 kB] Get:233 http://ftpmaster.internal/ubuntu/ trusty/main liblapack-dev powerpc 3.4.2+dfsg-4 [2631 kB] Get:234 http://ftpmaster.internal/ubuntu/ trusty/main libtinfo-dev powerpc 5.9+20130608-1ubuntu1 [105 kB] Get:235 http://ftpmaster.internal/ubuntu/ trusty/main libncurses5-dev powerpc 5.9+20130608-1ubuntu1 [217 kB] Get:236 http://ftpmaster.internal/ubuntu/ trusty/main libxft-dev powerpc 2.3.1-1 [53.6 kB] Get:237 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libpango1.0-dev powerpc 1.36.0-1ubuntu1 [254 kB] Get:238 http://ftpmaster.internal/ubuntu/ trusty/main libpaper-utils powerpc 1.1.24+nmu2ubuntu2 [8936 B] Get:239 http://ftpmaster.internal/ubuntu/ trusty/main libptexenc1 powerpc 2013.20130729.30972-2 [37.8 kB] Get:240 http://ftpmaster.internal/ubuntu/ trusty/main libreadline6-dev powerpc 6.2-9ubuntu1 [264 kB] Get:241 http://ftpmaster.internal/ubuntu/ trusty/main libreadline-dev powerpc 6.2-9ubuntu1 [936 B] Get:242 http://ftpmaster.internal/ubuntu/ trusty/main libtext-unidecode-perl all 0.04-2 [115 kB] Get:243 http://ftpmaster.internal/ubuntu/ trusty/main liblzma-dev powerpc 5.1.1alpha+20120614-2ubuntu1 [165 kB] Get:244 http://ftpmaster.internal/ubuntu/ trusty/main libtiff5-dev powerpc 4.0.2-4ubuntu3 [301 kB] Get:245 http://ftpmaster.internal/ubuntu/ trusty/main libxml-namespacesupport-perl all 1.09-3 [15.3 kB] Get:246 http://ftpmaster.internal/ubuntu/ trusty/main libxml-sax-base-perl all 1.07-1 [21.5 kB] Get:247 http://ftpmaster.internal/ubuntu/ trusty/main libxml-sax-perl all 0.99+dfsg-2ubuntu1 [64.6 kB] Get:248 http://ftpmaster.internal/ubuntu/ trusty/main libxml-libxml-perl powerpc 2.0106+dfsg-1 [381 kB] Get:249 http://ftpmaster.internal/ubuntu/ trusty/main x11proto-scrnsaver-dev all 1.2.2-1 [25.0 kB] Get:250 http://ftpmaster.internal/ubuntu/ trusty/main libxss-dev powerpc 1:1.2.2-1 [12.6 kB] Get:251 http://ftpmaster.internal/ubuntu/ trusty/main libxt-dev powerpc 1:1.1.4-1 [446 kB] Get:252 http://ftpmaster.internal/ubuntu/ trusty/main tex-common all 4.04 [621 kB] Get:253 http://ftpmaster.internal/ubuntu/ trusty/main luatex powerpc 0.76.0-3 [3638 kB] Get:254 http://ftpmaster.internal/ubuntu/ trusty/universe mpack powerpc 1.6-8 [39.4 kB] Get:255 http://ftpmaster.internal/ubuntu/ trusty/universe otf-freefont all 20120503-1 [1684 B] Get:256 http://ftpmaster.internal/ubuntu/ trusty/main preview-latex-style all 11.87-1ubuntu1 [186 kB] Get:257 http://ftpmaster.internal/ubuntu/ trusty/main tcl8.5 powerpc 8.5.13-1ubuntu4 [565 kB] Get:258 http://ftpmaster.internal/ubuntu/ trusty/main tcl8.5-dev powerpc 8.5.13-1ubuntu4 [928 kB] Get:259 http://ftpmaster.internal/ubuntu/ trusty/main texi2html all 1.82+dfsg1-3 [403 kB] Get:260 http://ftpmaster.internal/ubuntu/ trusty/main texinfo powerpc 5.1.dfsg.1-4ubuntu1 [682 kB] Get:261 http://ftpmaster.internal/ubuntu/ trusty/main xdg-utils all 1.1.0~rc1-2ubuntu7 [65.6 kB] Get:262 http://ftpmaster.internal/ubuntu/ trusty/main texlive-binaries powerpc 2013.20130729.30972-2 [6359 kB] Get:263 http://ftpmaster.internal/ubuntu/ trusty/main texlive-base all 2013.20131010-2 [16.2 MB] Get:264 http://ftpmaster.internal/ubuntu/ trusty/main texlive-latex-base all 2013.20131010-2 [827 kB] Get:265 http://ftpmaster.internal/ubuntu/ trusty/main texlive-extra-utils all 2013.20131010-1 [9854 kB] Get:266 http://ftpmaster.internal/ubuntu/ trusty/universe fonts-stix all 1.1.0-1 [763 kB] Get:267 http://ftpmaster.internal/ubuntu/ trusty/universe texlive-fonts-extra all 2013.20131010-1 [155 MB] Get:268 http://ftpmaster.internal/ubuntu/ trusty/main texlive-fonts-recommended all 2013.20131010-2 [5409 kB] Get:269 http://ftpmaster.internal/ubuntu/ trusty/main texlive-generic-recommended all 2013.20131010-2 [2114 kB] Get:270 http://ftpmaster.internal/ubuntu/ trusty/main texlive-latex-recommended all 2013.20131010-2 [7092 kB] Get:271 http://ftpmaster.internal/ubuntu/ trusty/main texlive-pictures all 2013.20131010-2 [2385 kB] Get:272 http://ftpmaster.internal/ubuntu/ trusty/main texlive-latex-extra all 2013.20131010-1 [7060 kB] Get:273 http://ftpmaster.internal/ubuntu/ trusty/main tk8.5 powerpc 8.5.11-2ubuntu4 [440 kB] Get:274 http://ftpmaster.internal/ubuntu/ trusty/main tk8.5-dev powerpc 8.5.11-2ubuntu4 [865 kB] Get:275 http://ftpmaster.internal/ubuntu/ trusty/main x11-xkb-utils powerpc 7.7~1ubuntu1 [188 kB] Get:276 http://ftpmaster.internal/ubuntu/ trusty/main xfonts-encodings all 1:1.0.4-1ubuntu1 [583 kB] Get:277 http://ftpmaster.internal/ubuntu/ trusty/main xfonts-utils powerpc 1:7.7~1ubuntu1 [97.2 kB] Get:278 http://ftpmaster.internal/ubuntu/ trusty/main xfonts-base all 1:1.0.3 [6180 kB] Get:279 http://ftpmaster.internal/ubuntu/ trusty/main xserver-common all 2:1.14.3-3ubuntu3 [31.8 kB] Get:280 http://ftpmaster.internal/ubuntu/ trusty/main xvfb powerpc 2:1.14.3-3ubuntu3 [862 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 371 MB in 34s (10.7 MB/s) Selecting previously unselected package libexpat1:powerpc. (Reading database ... 11937 files and directories currently installed.) Unpacking libexpat1:powerpc (from .../libexpat1_2.1.0-4_powerpc.deb) ... Selecting previously unselected package libffi6:powerpc. Unpacking libffi6:powerpc (from .../libffi6_3.0.13-4_powerpc.deb) ... Selecting previously unselected package libmagic1:powerpc. Unpacking libmagic1:powerpc (from .../libmagic1_5.11-2ubuntu4_powerpc.deb) ... Selecting previously unselected package libpopt0:powerpc. Unpacking libpopt0:powerpc (from .../libpopt0_1.16-7ubuntu3_powerpc.deb) ... Selecting previously unselected package libpython3.3-minimal:powerpc. Unpacking libpython3.3-minimal:powerpc (from .../libpython3.3-minimal_3.3.2-7ubuntu3_powerpc.deb) ... Selecting previously unselected package mime-support. Unpacking mime-support (from .../mime-support_3.54ubuntu1_all.deb) ... Selecting previously unselected package libpython3.3-stdlib:powerpc. 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Setting up libpython3.3-minimal:powerpc (3.3.2-7ubuntu3) ... Setting up mime-support (3.54ubuntu1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode Setting up libpython3.3-stdlib:powerpc (3.3.2-7ubuntu3) ... Setting up python3.3-minimal (3.3.2-7ubuntu3) ... Setting up libasprintf0c2:powerpc (0.18.3.1-1ubuntu1) ... Setting up libglib2.0-0:powerpc (2.38.1-1) ... No schema files found: doing nothing. Setting up libpipeline1:powerpc (1.2.4-1) ... Setting up libxau6:powerpc (1:1.0.8-1) ... Setting up libxdmcp6:powerpc (1:1.1.1-1) ... Setting up libxcb1:powerpc (1.9.1-3ubuntu1) ... Setting up libx11-data (2:1.6.1-1ubuntu2) ... Setting up libx11-6:powerpc (2:1.6.1-1ubuntu2) ... Setting up libxext6:powerpc (2:1.3.2-1) ... Setting up libxml2:powerpc (2.9.1+dfsg1-3ubuntu2) ... Setting up libxmuu1:powerpc (2:1.1.1-1) ... Setting up groff-base (1.22.2-3) ... Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up ucf (3.0027+nmu1) ... Setting up fonts-dejavu-core (2.33+svn2514-3ubuntu1) ... Setting up ttf-dejavu-core (2.33+svn2514-3ubuntu1) ... Setting up fonts-freefont-ttf (20120503-1) ... Setting up ttf-freefont (20120503-1) ... Setting up fontconfig-config (2.10.93-0ubuntu1) ... Setting up fonts-droid (1:4.3-1) ... Setting up fonts-junicode (0.7.8-1) ... Setting up fonts-lato (1.104-4) ... Setting up libasound2-data (1.0.27.2-1ubuntu6) ... Setting up libasound2:powerpc (1.0.27.2-1ubuntu6) ... Setting up libasyncns0:powerpc (0.8-4ubuntu1) ... Setting up libatk1.0-data (2.10.0-2) ... Setting up libatk1.0-0:powerpc (2.10.0-2) ... Setting up libgtk2.0-common (2.24.21-1ubuntu1) ... Setting up libfreetype6:powerpc (2.4.12-0ubuntu1) ... Setting up libfontconfig1:powerpc (2.10.93-0ubuntu1) ... Setting up libpixman-1-0:powerpc (0.30.2-1) ... Setting up libxcb-render0:powerpc (1.9.1-3ubuntu1) ... Setting up libxcb-shm0:powerpc (1.9.1-3ubuntu1) ... Setting up libxrender1:powerpc (1:0.9.8-1) ... Setting up libcairo2:powerpc (1.12.16-0ubuntu2) ... Setting up libavahi-common-data:powerpc (0.6.31-2ubuntu4) ... Setting up libavahi-common3:powerpc (0.6.31-2ubuntu4) ... Setting up libavahi-client3:powerpc (0.6.31-2ubuntu4) ... Setting up libcups2:powerpc (1.7.0~rc1-0ubuntu5) ... Setting up libjpeg-turbo8:powerpc (1.3.0-0ubuntu1) ... Setting up libjpeg8:powerpc (8c-2ubuntu8) ... Setting up libjasper1:powerpc (1.900.1-14) ... Setting up libjbig0:powerpc (2.0-2ubuntu1) ... Setting up libtiff5:powerpc (4.0.2-4ubuntu3) ... Setting up libgdk-pixbuf2.0-common (2.28.1-1ubuntu2) ... Setting up libgdk-pixbuf2.0-0:powerpc (2.28.1-1ubuntu2) ... Setting up libthai-data (0.1.19-2) ... Setting up libdatrie1:powerpc (0.2.7.1-1) ... Setting up libthai0:powerpc (0.1.19-2) ... Setting up fontconfig (2.10.93-0ubuntu1) ... Regenerating fonts cache... done. Setting up libpango-1.0-0:powerpc (1.36.0-1ubuntu1) ... Setting up libgraphite2-3:powerpc (1.2.3-1) ... Setting up libharfbuzz0a:powerpc (0.9.19-1) ... Setting up libpangoft2-1.0-0:powerpc (1.36.0-1ubuntu1) ... Setting up libpangocairo-1.0-0:powerpc (1.36.0-1ubuntu1) ... Setting up libxcomposite1:powerpc (1:0.4.4-1) ... Setting up libxfixes3:powerpc (1:5.0.1-1ubuntu1) ... Setting up libxcursor1:powerpc (1:1.1.14-1) ... Setting up libxdamage1:powerpc (1:1.1.4-1ubuntu1) ... Setting up libxi6:powerpc (2:1.7.1.901-1ubuntu1) ... Setting up libxinerama1:powerpc (2:1.1.3-1) ... Setting up libxrandr2:powerpc (2:1.4.0-1ubuntu2) ... Setting up shared-mime-info (1.1-0ubuntu5) ... Setting up libgtk2.0-0:powerpc (2.24.21-1ubuntu1) ... Setting up openssl (1.0.1e-3ubuntu1) ... Setting up ca-certificates (20130906) ... Setting up java-common (0.48ubuntu2) ... Setting up tzdata-java (2013g-0ubuntu1) ... Setting up liblcms2-2:powerpc (2.5-0ubuntu1) ... Setting up libnspr4:powerpc (2:4.9.5-1ubuntu1) ... Setting up libnss3:powerpc (2:3.15.1-1ubuntu1) ... Setting up libnss3-1d:powerpc (2:3.15.1-1ubuntu1) ... Setting up libpcsclite1:powerpc (1.8.6-3ubuntu1b1) ... Setting up libgif4:powerpc (4.1.6-10ubuntu1) ... Setting up libogg0:powerpc (1.3.1-1) ... Setting up libflac8:powerpc (1.3.0-2) ... Setting up libvorbis0a:powerpc (1.3.2-1.3) ... Setting up libvorbisenc2:powerpc (1.3.2-1.3) ... Setting up libsndfile1:powerpc (1.0.25-7ubuntu1) ... Setting up libwrap0:powerpc (7.6.q-24) ... Setting up libpulse0:powerpc (1:4.0-0ubuntu6) ... Setting up x11-common (1:7.7+1ubuntu6) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up libxtst6:powerpc (2:1.2.2-1) ... Setting up libglapi-mesa:powerpc (9.2.2-1ubuntu1) ... Setting up libx11-xcb1:powerpc (2:1.6.1-1ubuntu2) ... Setting up libxcb-dri2-0:powerpc (1.9.1-3ubuntu1) ... Setting up libxcb-glx0:powerpc (1.9.1-3ubuntu1) ... Setting up libxxf86vm1:powerpc (1:1.1.3-1) ... Setting up libgl1-mesa-glx:powerpc (9.2.2-1ubuntu1) ... update-alternatives: using /usr/lib/powerpc-linux-gnu/mesa/ld.so.conf to provide /etc/ld.so.conf.d/powerpc-linux-gnu_GL.conf (powerpc-linux-gnu_gl_conf) in auto mode Setting up libcairo-gobject2:powerpc (1.12.16-0ubuntu2) ... Setting up liblzo2-2:powerpc (2.06-1.2) ... Setting up libcairo-script-interpreter2:powerpc (1.12.16-0ubuntu2) ... Setting up libcroco3:powerpc (0.6.8-2) ... Setting up libcupsfilters1:powerpc (1.0.40-0ubuntu2) ... Setting up libcupsimage2:powerpc (1.7.0~rc1-0ubuntu5) ... Setting up libelfg0:powerpc (0.8.13-4~1) ... Setting up libfontenc1:powerpc (1:1.1.2-1) ... Setting up libgfortran3:powerpc (4.8.2-1ubuntu2) ... Setting up libicu48:powerpc (4.8.1.1-12ubuntu2) ... Setting up libharfbuzz-icu0:powerpc (0.9.19-1) ... Setting up libice6:powerpc (2:1.0.8-2) ... Setting up libxft2:powerpc (2.3.1-1) ... Setting up libpangoxft-1.0-0:powerpc (1.36.0-1ubuntu1) ... Setting up libpaper1:powerpc (1.1.24+nmu2ubuntu2) ... Creating config file /etc/papersize with new version Setting up libpcrecpp0:powerpc (1:8.31-2) ... Setting up libpoppler43:powerpc (0.24.1-0ubuntu1) ... Setting up libsigsegv2:powerpc (2.10-2) ... Setting up libsm6:powerpc (2:1.2.1-2) ... Setting up libtiffxx5:powerpc (4.0.2-4ubuntu3) ... Setting up libunistring0:powerpc (0.9.3-5ubuntu1) ... Setting up libxt6:powerpc (1:1.1.4-1) ... Setting up libxmu6:powerpc (2:1.1.1-1) ... Setting up libxpm4:powerpc (1:3.5.10-1) ... Setting up libxaw7:powerpc (2:1.0.11-1) ... Setting up libxfont1:powerpc (1:1.4.6-1) ... Setting up libxkbfile1:powerpc (1:1.0.8-1) ... Setting up libxss1:powerpc (1:1.2.2-1) ... Setting up poppler-data (0.4.6-4) ... Setting up libpython2.7-minimal:powerpc (2.7.5-8ubuntu3) ... Setting up python2.7-minimal (2.7.5-8ubuntu3) ... Linking and byte-compiling packages for runtime python2.7... Setting up tcl8.5-lib:powerpc (8.5.13-1ubuntu4) ... Setting up tk8.5-lib:powerpc (8.5.11-2ubuntu4) ... Setting up libjbig-dev:powerpc (2.0-2ubuntu1) ... Setting up python3.3 (3.3.2-7ubuntu3) ... Setting up python3-minimal (3.3.2-14ubuntu1) ... Setting up libpython3-stdlib:powerpc (3.3.2-14ubuntu1) ... Setting up file (5.11-2ubuntu4) ... Setting up xkb-data (2.5.1-3ubuntu2) ... Setting up gettext-base (0.18.3.1-1ubuntu1) ... Setting up libgirepository-1.0-1 (1.38.0-0ubuntu1) ... Setting up gir1.2-glib-2.0 (1.38.0-0ubuntu1) ... Setting up libglib2.0-data (2.38.1-1) ... Setting up xauth (1:1.0.7-1ubuntu1) ... Setting up m4 (1.4.17-1) ... Setting up libbison-dev:powerpc (2:2.7.1.dfsg-1) ... Setting up bison (2:2.7.1.dfsg-1) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode Setting up gettext (0.18.3.1-1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up fonts-cabin (1.5-2) ... Setting up fonts-comfortaa (2.003-1) ... Setting up fonts-dejavu-extra (2.33+svn2514-3ubuntu1) ... Setting up fonts-font-awesome (3.2.1~dfsg-2) ... Setting up fonts-freefont-otf (20120503-1) ... Setting up fonts-gfs-artemisia (1.1-5) ... Setting up fonts-gfs-complutum (1.1-5) ... Setting up fonts-gfs-didot (1.1-5) ... Setting up fonts-gfs-neohellenic (1.1-4) ... Setting up fonts-gfs-olga (1.1-3) ... Setting up fonts-gfs-solomos (1.1-5) ... Setting up fonts-inconsolata (001.010-4) ... Setting up fonts-linuxlibertine (5.3.0-2) ... Setting up fonts-oflb-asana-math (000.907-4) ... Setting up fonts-sil-gentium (20081126:1.02-12) ... Setting up fonts-sil-gentium-basic (1.1-5) ... Setting up libgfortran-4.8-dev:powerpc (4.8.2-1ubuntu2) ... Setting up gfortran-4.8 (4.8.2-1ubuntu2) ... Setting up gfortran (4:4.8.1-2ubuntu3) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode Setting up gir1.2-freedesktop (1.38.0-0ubuntu1) ... Setting up gir1.2-pango-1.0 (1.36.0-1ubuntu1) ... Setting up libblas3 (1.2.20110419-7) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up libblas-dev (1.2.20110419-7) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode Setting up libbz2-dev:powerpc (1.0.6-5) ... Setting up libexpat1-dev:powerpc (2.1.0-4) ... Setting up zlib1g-dev:powerpc (1:1.2.8.dfsg-1ubuntu1) ... Setting up libfreetype6-dev (2.4.12-0ubuntu1) ... Setting up pkg-config (0.26-1ubuntu4) ... Setting up libfontconfig1-dev (2.10.93-0ubuntu1) ... Setting up xorg-sgml-doctools (1:1.11-1) ... Setting up x11proto-core-dev (7.0.24-1) ... Setting up libxau-dev:powerpc (1:1.0.8-1) ... Setting up libxdmcp-dev:powerpc (1:1.1.1-1) ... Setting up x11proto-input-dev (2.3-1) ... Setting up x11proto-kb-dev (1.0.6-2) ... Setting up xtrans-dev (1.2.7-1) ... Setting up libpthread-stubs0-dev:powerpc (0.3-4) ... Setting up libxcb1-dev:powerpc (1.9.1-3ubuntu1) ... Setting up libx11-dev:powerpc (2:1.6.1-1ubuntu2) ... Setting up x11proto-render-dev (2:0.11.1-2) ... Setting up libxrender-dev:powerpc (1:0.9.8-1) ... Setting up libpng12-dev (1.2.49-4ubuntu1) ... Setting up libice-dev:powerpc (2:1.0.8-2) ... Setting up libsm-dev:powerpc (2:1.2.1-2) ... Setting up libpixman-1-dev (0.30.2-1) ... Setting up libxcb-render0-dev:powerpc (1.9.1-3ubuntu1) ... Setting up libxcb-shm0-dev:powerpc (1.9.1-3ubuntu1) ... Setting up x11proto-xext-dev (7.2.1-1) ... Setting up libxext-dev:powerpc (2:1.3.2-1) ... Setting up libpython2.7-stdlib:powerpc (2.7.5-8ubuntu3) ... Setting up python2.7 (2.7.5-8ubuntu3) ... Setting up python-minimal (2.7.5-5ubuntu1) ... Setting up libpython-stdlib:powerpc (2.7.5-5ubuntu1) ... Setting up python (2.7.5-5ubuntu1) ... Setting up libglib2.0-bin (2.38.1-1) ... Setting up libpcre3-dev:powerpc (1:8.31-2) ... Setting up libglib2.0-dev (2.38.1-1) ... Setting up libcairo2-dev (1.12.16-0ubuntu2) ... Setting up libijs-0.35 (0.35-8build1) ... Setting up libjbig2dec0 (0.11+20120125-1ubuntu1) ... Setting up libgs9-common (9.10~dfsg-0ubuntu2) ... update-alternatives: using /usr/share/ghostscript/9.10 to provide /usr/share/ghostscript/current (ghostscript-current) in auto mode Setting up libgs9 (9.10~dfsg-0ubuntu2) ... Setting up libharfbuzz-dev (0.9.19-1) ... Setting up libintl-perl (1.23-1build1) ... Setting up libjpeg-turbo8-dev:powerpc (1.3.0-0ubuntu1) ... Setting up libjpeg8-dev:powerpc (8c-2ubuntu8) ... Setting up libjpeg-dev:powerpc (8c-2ubuntu8) ... Setting up libkpathsea6 (2013.20130729.30972-2) ... Setting up liblapack3 (3.4.2+dfsg-4) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up liblapack-dev (3.4.2+dfsg-4) ... update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode Setting up libtinfo-dev:powerpc (5.9+20130608-1ubuntu1) ... Setting up libncurses5-dev:powerpc (5.9+20130608-1ubuntu1) ... Setting up libxft-dev (2.3.1-1) ... Setting up libpango1.0-dev (1.36.0-1ubuntu1) ... Setting up libpaper-utils (1.1.24+nmu2ubuntu2) ... Setting up libptexenc1 (2013.20130729.30972-2) ... Setting up libreadline6-dev:powerpc (6.2-9ubuntu1) ... Setting up libreadline-dev:powerpc (6.2-9ubuntu1) ... Setting up libtext-unidecode-perl (0.04-2) ... Setting up liblzma-dev:powerpc (5.1.1alpha+20120614-2ubuntu1) ... Setting up libtiff5-dev (4.0.2-4ubuntu3) ... Setting up libxml-namespacesupport-perl (1.09-3) ... Setting up libxml-sax-base-perl (1.07-1) ... Setting up libxml-sax-perl (0.99+dfsg-2ubuntu1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0106+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up x11proto-scrnsaver-dev (1.2.2-1) ... Setting up libxss-dev:powerpc (1:1.2.2-1) ... Setting up libxt-dev:powerpc (1:1.1.4-1) ... Setting up tex-common (4.04) ... Running mktexlsr. This may take some time... done. texlive-base is not ready, delaying updmap-sys call texlive-base is not ready, skipping fmtutil-sys --all call Setting up luatex (0.76.0-3) ... texlive-base is not ready, cannot create formats Setting up mpack (1.6-8) ... Setting up otf-freefont (20120503-1) ... Setting up preview-latex-style (11.87-1ubuntu1) ... Setting up tcl8.5 (8.5.13-1ubuntu4) ... update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode Setting up tcl8.5-dev:powerpc (8.5.13-1ubuntu4) ... Setting up texi2html (1.82+dfsg1-3) ... Setting up texinfo (5.1.dfsg.1-4ubuntu1) ... Running mktexlsr. This may take some time. ... done. Setting up xdg-utils (1.1.0~rc1-2ubuntu7) ... Setting up texlive-binaries (2013.20130729.30972-2) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Building format(s) --refresh. This may take some time... done. Setting up texlive-base (2013.20131010-2) ... /usr/bin/tl-paper: setting paper size for dvips to a4. /usr/bin/tl-paper: setting paper size for dvipdfmx to a4. /usr/bin/tl-paper: setting paper size for xdvi to a4. /usr/bin/tl-paper: setting paper size for pdftex to a4. Running mktexlsr. This may take some time... done. Building format(s) --all. This may take some time... done. Setting up fonts-stix (1.1.0-1) ... Setting up tk8.5 (8.5.11-2ubuntu4) ... update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode Setting up tk8.5-dev:powerpc (8.5.11-2ubuntu4) ... Setting up x11-xkb-utils (7.7~1ubuntu1) ... Setting up xfonts-encodings (1:1.0.4-1ubuntu1) ... Setting up xfonts-utils (1:7.7~1ubuntu1) ... Setting up xfonts-base (1:1.0.3) ... Setting up xserver-common (2:1.14.3-3ubuntu3) ... Setting up xvfb (2:1.14.3-3ubuntu3) ... Processing triggers for tex-common ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up texlive-latex-base (2013.20131010-2) ... Running mktexlsr. This may take some time... done. Building format(s) --all --cnffile /etc/texmf/fmt.d/10texlive-latex-base.cnf. This may take some time... done. Setting up texlive-fonts-extra (2013.20131010-1) ... Setting up texlive-fonts-recommended (2013.20131010-2) ... Setting up texlive-generic-recommended (2013.20131010-2) ... Setting up texlive-pictures (2013.20131010-2) ... Processing triggers for tex-common ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up texlive-extra-utils (2013.20131010-1) ... Setting up texlive-latex-recommended (2013.20131010-2) ... Processing triggers for tex-common ... Running mktexlsr. This may take some time... done. Setting up texlive-latex-extra (2013.20131010-1) ... Processing triggers for tex-common ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up python3 (3.3.2-14ubuntu1) ... running python rtupdate hooks for python3.3... running python post-rtupdate hooks for python3.3... Setting up dh-python (1.20131021-1ubuntu1) ... Setting up apparmor-easyprof (2.8.0-0ubuntu32) ... Setting up dh-apparmor (2.8.0-0ubuntu32) ... Setting up debhelper (9.20130921ubuntu1) ... Setting up openjdk-7-jre-headless:powerpc (7u25-2.3.12-4ubuntu3) ... update-alternatives: using /usr/lib/jvm/java-7-openjdk-powerpc/jre/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-powerpc/jre/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-powerpc/jre/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-powerpc/jre/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-powerpc/jre/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-powerpc/jre/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-powerpc/jre/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-powerpc/jre/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-powerpc/jre/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-powerpc/jre/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up default-jre-headless (1:1.7-48ubuntu2) ... Setting up openjdk-7-jre:powerpc (7u25-2.3.12-4ubuntu3) ... update-alternatives: using /usr/lib/jvm/java-7-openjdk-powerpc/jre/bin/policytool to provide /usr/bin/policytool (policytool) in auto mode Setting up default-jre (1:1.7-48ubuntu2) ... Setting up openjdk-7-jdk:powerpc (7u25-2.3.12-4ubuntu3) ... update-alternatives: using /usr/lib/jvm/java-7-openjdk-powerpc/bin/appletviewer to provide /usr/bin/appletviewer (appletviewer) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-powerpc/bin/extcheck to provide /usr/bin/extcheck (extcheck) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-powerpc/bin/idlj to provide /usr/bin/idlj (idlj) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-powerpc/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-powerpc/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-powerpc/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-powerpc/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-powerpc/bin/javah to provide /usr/bin/javah (javah) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-powerpc/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-powerpc/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-powerpc/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-powerpc/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-powerpc/bin/jhat to provide /usr/bin/jhat (jhat) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-powerpc/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-powerpc/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-powerpc/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-powerpc/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-powerpc/bin/jsadebugd to provide /usr/bin/jsadebugd (jsadebugd) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-powerpc/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-powerpc/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-powerpc/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-powerpc/bin/native2ascii to provide /usr/bin/native2ascii (native2ascii) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-powerpc/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-powerpc/bin/schemagen to provide /usr/bin/schemagen (schemagen) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-powerpc/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-powerpc/bin/wsgen to provide /usr/bin/wsgen (wsgen) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-powerpc/bin/wsimport to provide /usr/bin/wsimport (wsimport) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-powerpc/bin/xjc to provide /usr/bin/xjc (xjc) in auto mode Setting up default-jdk (1:1.7-48ubuntu2) ... Setting up ca-certificates-java (20130815) ... done. Setting up openjdk-7-jre-lib (7u25-2.3.12-4ubuntu3) ... Setting up libatk-wrapper-java (0.30.4-0ubuntu4) ... Setting up libatk-wrapper-java-jni:powerpc (0.30.4-0ubuntu4) ... Processing triggers for libc-bin ... Processing triggers for ca-certificates ... Updating certificates in /etc/ssl/certs... 164 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d.... Adding debian:cacert.org_class3.pem Adding debian:cacert.org_root.pem Adding debian:A-Trust-nQual-03.pem Adding debian:ACEDICOM_Root.pem Adding debian:AC_Raíz_Certicámara_S.A..pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AddTrust_External_Root.pem Adding debian:AddTrust_Low-Value_Services_Root.pem Adding debian:AddTrust_Public_Services_Root.pem Adding debian:AddTrust_Qualified_Certificates_Root.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:America_Online_Root_Certification_Authority_1.pem Adding debian:America_Online_Root_Certification_Authority_2.pem Adding debian:ApplicationCA_-_Japanese_Government.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_CA_1.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_CA_1.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig.pem Adding debian:CA_Disig_Root_R1.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CNNIC_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:Camerfirma_Chambers_of_Commerce_Root.pem Adding debian:Camerfirma_Global_Chambersign_Root.pem Adding debian:Certigna.pem Adding debian:Certinomis_-_Autorité_Racine.pem Adding debian:Certplus_Class_2_Primary_CA.pem Adding debian:Certum_Root_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:China_Internet_Network_Information_Center_EV_Certificates_Root.pem Adding debian:ComSign_CA.pem Adding debian:ComSign_Secured_CA.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:Comodo_Secure_Services_root.pem Adding debian:Comodo_Trusted_Services_root.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DST_ACES_CA_X6.pem Adding debian:DST_Root_CA_X3.pem Adding debian:Deutsche_Telekom_Root_CA_2.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:Digital_Signature_Trust_Co._Global_CA_1.pem Adding debian:Digital_Signature_Trust_Co._Global_CA_3.pem Adding debian:E-Guven_Kok_Elektronik_Sertifika_Hizmet_Saglayicisi.pem Adding debian:EBG_Elektronik_Sertifika_Hizmet_SaÄŸlayıcısı.pem Adding debian:EC-ACC.pem Adding debian:EE_Certification_Centre_Root_CA.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust.net_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Equifax_Secure_CA.pem Adding debian:Equifax_Secure_Global_eBusiness_CA.pem Adding debian:Equifax_Secure_eBusiness_CA_1.pem Adding debian:Firmaprofesional_Root_CA.pem Adding debian:GTE_CyberTrust_Global_Root.pem Adding debian:GeoTrust_Global_CA.pem Adding debian:GeoTrust_Global_CA_2.pem Adding debian:GeoTrust_Primary_Certification_Authority.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem Adding debian:GeoTrust_Universal_CA.pem Adding debian:GeoTrust_Universal_CA_2.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:IGC_A.pem Adding debian:Izenpe.com.pem Adding debian:Juur-SK.pem Adding debian:Microsec_e-Szigno_Root_CA.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:NetLock_Arany_=Class_Gold=_FÅ‘tanúsítvány.pem Adding debian:NetLock_Business_=Class_B=_Root.pem Adding debian:NetLock_Express_=Class_C=_Root.pem Adding debian:NetLock_Notary_=Class_A=_Root.pem Adding debian:NetLock_Qualified_=Class_QA=_Root.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem Adding debian:PSCProcert.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:RSA_Root_Certificate_1.pem Adding debian:RSA_Security_2048_v3.pem Adding debian:Root_CA_Generalitat_Valenciana.pem Adding debian:S-TRUST_Authentication_and_Encryption_Root_CA_2005_PN.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_EV_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Sonera_Class_1_Root_CA.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:StartCom_Certification_Authority.pem Adding debian:StartCom_Certification_Authority_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Platinum_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:Swisscom_Root_CA_1.pem Adding debian:Swisscom_Root_CA_2.pem Adding debian:Swisscom_Root_EV_CA_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TC_TrustCenter_Class_2_CA_II.pem Adding debian:TC_TrustCenter_Class_3_CA_II.pem Adding debian:TC_TrustCenter_Universal_CA_I.pem Adding debian:TDC_Internet_Root_CA.pem Adding debian:TDC_OCES_Root_CA.pem Adding debian:TURKTRUST_Certificate_Services_Provider_Root_1.pem Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2.pem Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2007.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:Taiwan_GRCA.pem Adding debian:Thawte_Premium_Server_CA.pem Adding debian:Thawte_Server_CA.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:TÃœBÄ°TAK_UEKAE_Kök_Sertifika_Hizmet_SaÄŸlayıcısı_-_Sürüm_3.pem Adding debian:UTN_DATACorp_SGC_Root_CA.pem Adding debian:UTN_USERFirst_Email_Root_CA.pem Adding debian:UTN_USERFirst_Hardware_Root_CA.pem Adding debian:ValiCert_Class_1_VA.pem Adding debian:ValiCert_Class_2_VA.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority.pem Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G2.pem Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G2.pem Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G2.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Verisign_Class_4_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Visa_eCommerce_Root.pem Adding debian:WellsSecure_Public_Root_Certificate_Authority.pem Adding debian:Wells_Fargo_Root_CA.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:thawte_Primary_Root_CA.pem Adding debian:thawte_Primary_Root_CA_-_G2.pem Adding debian:thawte_Primary_Root_CA_-_G3.pem Adding debian:spi-cacert-2008.pem done. done. Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.17-93ubuntu4 make_3.81-8.2ubuntu3 dpkg-dev_1.16.12ubuntu1 gcc-4.8_4.8.2-1ubuntu2 g++-4.8_4.8.2-1ubuntu2 binutils_2.23.90.20131017-1ubuntu1 libstdc++-4.8-dev_4.8.2-1ubuntu2 libstdc++6_4.8.2-1ubuntu2 ------------------------------------------------------------------------------ gpgv: Signature made Fri Oct 25 10:18:00 2013 UTC using RSA key ID 7D86500B gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./r-base_3.0.2-1ubuntu1.dsc dpkg-source: info: extracting r-base in r-base-3.0.2 dpkg-source: info: unpacking r-base_3.0.2.orig.tar.gz dpkg-source: info: applying r-base_3.0.2-1ubuntu1.diff.gz dpkg-source: info: upstream files that have been modified: r-base-3.0.2/src/library/tools/R/install.R dpkg-buildpackage: source package r-base dpkg-buildpackage: source version 3.0.2-1ubuntu1 dpkg-source --before-build r-base-3.0.2 dpkg-buildpackage: host architecture powerpc /usr/bin/fakeroot debian/rules clean *** clean *** dh_testdir dh_testroot rm -f configure-stamp \ build-stamp build-indep-stamp build-arch-stamp \ make-stamp make-arch-stamp make-indep-stamp \ install-indep-stamp install-arch-stamp \ check-stamp [ ! -f Makefile ] || /usr/bin/make distclean rm -f `find . -name "*~"` rm -rf debian/tmp debian/files* core debian/substvars rm -f doc/html/function.html doc/html/packages.html rm -f modules/*.so src/unix/Rscript dh_clean debian/rules build-arch *** configure *** #automake #autoconf dh_testdir R_PAPERSIZE=letter \ R_BROWSER=xdg-open \ PAGER=/usr/bin/pager \ PERL=/usr/bin/perl \ R_UNZIPCMD=/usr/bin/unzip \ R_ZIPCMD=/usr/bin/zip \ R_PRINTCMD=/usr/bin/lpr \ LIBnn=lib \ AWK=/usr/bin/awk \ CC="gcc -std=gnu99" \ CXX=g++ \ F77=gfortran \ FC=gfortran \ CFLAGS="-O3 -pipe -g" \ CXXFLAGS="-O3 -pipe -g" \ FFLAGS="-O3 -pipe -g" \ FCFLAGS="-O3 -pipe -g" \ CPPFLAGS= \ LDFLAGS= \ FLIBS= \ rsharedir=/usr/share/R/share \ rincludedir=/usr/share/R/include \ rdocdir=/usr/share/R/doc \ ./configure --prefix=/usr \ --with-cairo \ --with-jpeglib \ --with-readline \ --with-tcltk \ --with-system-bzlib \ --with-system-pcre \ --with-system-zlib \ --mandir=/usr/share/man \ --infodir=/usr/share/info \ --datadir=/usr/share/R/share \ --includedir=/usr/share/R/include \ --with-blas \ --with-lapack \ --enable-R-profiling \ --enable-R-shlib \ --enable-memory-profiling \ --without-recommended-packages \ --build powerpc-linux-gnu checking build system type... powerpc-unknown-linux-gnu checking host system type... powerpc-unknown-linux-gnu loading site script './config.site' loading build-specific script './config.site' checking for pwd... /bin/pwd checking whether builddir is srcdir... yes checking for working aclocal... missing checking for working autoconf... missing checking for working automake... missing checking for working autoheader... missing checking for gawk... /usr/bin/awk checking whether ln -s works... yes checking for bison... bison -y checking for ar... ar checking for a BSD-compatible install... /usr/bin/install -c checking for sed... /bin/sed checking for which... /usr/bin/which checking for /usr/bin/pager... /usr/bin/pager checking for gtar... no checking for gnutar... no checking for tar... /bin/tar checking for tex... /usr/bin/tex checking for pdftex... /usr/bin/pdftex checking for pdflatex... /usr/bin/pdflatex checking for makeindex... /usr/bin/makeindex checking for makeinfo... /usr/bin/makeinfo checking whether makeinfo version is at least 4.7... yes checking for ginstall-info... no checking for install-info... /usr/sbin/install-info checking for texi2dvi... /usr/bin/texi2dvi checking for kpsewhich... /usr/bin/kpsewhich /usr/share/texlive/texmf-dist/tex/latex/inconsolata/zi4.sty checking for unzip... /usr/bin/unzip checking for zip... /usr/bin/zip checking for gzip... /bin/gzip checking for bzip2... /bin/bzip2 using default browser ... xdg-open checking for acroread... no checking for acroread4... no checking for xdg-open... /usr/bin/xdg-open checking for notangle... false checking for realpath... false checking for pkg-config... /usr/bin/pkg-config checking for gcc... gcc -std=gnu99 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc -std=gnu99 accepts -g... yes checking for gcc -std=gnu99 option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -std=gnu99 -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking whether gcc -std=gnu99 needs -traditional... no checking how to run the C preprocessor... gcc -std=gnu99 -E defining F77 to be gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C++ preprocessor... g++ -E checking whether __attribute__((visibility())) is supported... yes checking whether gcc -std=gnu99 accepts -fvisibility... yes checking whether gfortran accepts -fvisibility... yes checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking for gcc... gcc checking whether we are using the GNU Objective C compiler... no checking whether gcc accepts -g... no checking for Objective C++ compiler... trying some possibilities checking whether g++ can compile ObjC++... no checking whether can compile ObjC++... no no working compiler found checking for a sed that does not truncate output... (cached) /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc -std=gnu99... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 805306365 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc -std=gnu99 object... ok checking for dlfcn.h... yes checking whether we are using the GNU C++ compiler... (cached) yes checking whether g++ accepts -g... (cached) yes checking how to run the C++ preprocessor... g++ -E checking whether we are using the GNU Fortran 77 compiler... (cached) yes checking whether gfortran accepts -g... (cached) yes checking for objdir... .libs checking if gcc -std=gnu99 supports -fno-rtti -fno-exceptions... no checking for gcc -std=gnu99 option to produce PIC... -fPIC -DPIC checking if gcc -std=gnu99 PIC flag -fPIC -DPIC works... yes checking if gcc -std=gnu99 static flag -static works... yes checking if gcc -std=gnu99 supports -c -o file.o... yes checking if gcc -std=gnu99 supports -c -o file.o... (cached) yes checking whether the gcc -std=gnu99 linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for cos in -lm... yes checking for sin in -lm... yes checking for dlopen in -ldl... yes checking readline/history.h usability... yes checking readline/history.h presence... yes checking for readline/history.h... yes checking readline/readline.h usability... yes checking readline/readline.h presence... yes checking for readline/readline.h... yes checking for rl_callback_read_char in -lreadline... yes checking for history_truncate_file... yes checking whether rl_completion_matches exists and is declared... yes checking for ANSI C header files... (cached) yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for sys/wait.h that is POSIX.1 compatible... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking dl.h usability... no checking dl.h presence... no checking for dl.h... no checking for dlfcn.h... (cached) yes checking elf.h usability... yes checking elf.h presence... yes checking for elf.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking floatingpoint.h usability... no checking floatingpoint.h presence... no checking for floatingpoint.h... no checking fpu_control.h usability... yes checking fpu_control.h presence... yes checking for fpu_control.h... yes checking glob.h usability... yes checking glob.h presence... yes checking for glob.h... yes checking grp.h usability... yes checking grp.h presence... yes checking for grp.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for strings.h... (cached) yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking for sys/stat.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/times.h usability... yes checking sys/times.h presence... yes checking for sys/times.h... yes checking sys/utsname.h usability... yes checking sys/utsname.h presence... yes checking for sys/utsname.h... yes checking for unistd.h... (cached) yes checking utime.h usability... yes checking utime.h presence... yes checking for utime.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking for inttypes.h... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking stdbool.h usability... yes checking stdbool.h presence... yes checking for stdbool.h... yes checking for stdint.h... (cached) yes checking for string.h... (cached) yes checking whether setjmp.h is POSIX.1 compatible... yes checking whether sigsetjmp is declared... yes checking whether siglongjmp is declared... yes checking for GNU C library with version >= 2... yes checking return type of signal handlers... void checking for uint64_t... yes checking for int64_t... yes checking for int_fast64_t... yes checking for pid_t... yes checking for size_t... yes checking whether SIZE_MAX is declared... yes checking for blkcnt_t... yes checking for type of socket length... socklen_t * checking for stack_t... yes checking for intptr_t... yes checking for uintptr_t... yes checking whether byte ordering is bigendian... yes checking for an ANSI C-conforming const... yes checking for gcc -std=gnu99 option to accept ISO C99... none needed checking for gcc -std=gnu99 option to accept ISO Standard C... 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-L/usr/lib/gcc/powerpc-linux-gnu/4.8/../../../powerpc-linux-gnu -L/usr/lib/gcc/powerpc-linux-gnu/4.8/../../../../lib -L/lib/powerpc-linux-gnu -L/lib/../lib -L/usr/lib/powerpc-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/powerpc-linux-gnu/4.8/../../.. -lgcc_s checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking whether gfortran appends underscores to external names... yes checking whether gfortran appends extra underscores to external names... no checking whether mixed C/Fortran code can be run... yes checking whether gfortran and gcc -std=gnu99 agree on int and double... yes checking whether gfortran and gcc -std=gnu99 agree on double complex... yes checking for gfortran option to support OpenMP... -fopenmp checking whether g++ accepts -M for generating dependencies... yes checking for g++ option to support OpenMP... -fopenmp checking whether we can compute ObjC Make 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GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for Fortran flag to compile .f90 files... none checking for Fortran flag to compile .f95 files... none checking for gfortran option to support OpenMP... -fopenmp checking whether NLS is requested... yes Configuring src/extra/intl directory checking for a thread-safe mkdir -p... /bin/mkdir -p checking whether we are using the GNU C Library 2 or newer... yes checking for ranlib... (cached) ranlib checking for simple visibility declarations... yes checking for stdint.h... yes checking for getpagesize... yes checking for working mmap... yes checking whether integer division by zero raises SIGFPE... no checking for inttypes.h... yes checking for unsigned long long int... yes checking for inttypes.h... 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(cached) yes checking for strtoul... yes checking for tsearch... yes checking for argz_count... yes checking for argz_stringify... yes checking for argz_next... yes checking for __fsetlocking... yes checking whether feof_unlocked is declared... yes checking whether fgets_unlocked is declared... yes checking for iconv... (cached) yes checking for iconv declaration... (cached) extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for NL_LOCALE_NAME macro... yes checking for bison... bison checking version of bison... 2.7.12, ok checking for long long int... yes checking for long double... yes checking for wchar_t... yes checking for wint_t... yes checking for intmax_t... yes checking whether printf() supports POSIX/XSI format strings... yes checking whether we are using the GNU C Library 2.1 or newer... yes checking for stdint.h... (cached) yes checking for SIZE_MAX... yes checking for stdint.h... 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(cached) no checking whether included gettext is requested... no checking for GNU gettext in libc... yes checking whether to use NLS... yes checking where the gettext function comes from... libc Finished configuring src/extra/intl directory using as R_SHELL for scripts ... /bin/bash configure: creating ./config.status config.status: creating Makeconf config.status: creating Makefile config.status: creating doc/Makefile config.status: creating doc/html/Makefile config.status: creating doc/manual/Makefile config.status: creating etc/Makefile config.status: creating etc/Makeconf config.status: creating etc/Renviron config.status: creating etc/javaconf config.status: creating etc/ldpaths config.status: creating m4/Makefile config.status: creating po/Makefile config.status: creating share/Makefile config.status: creating src/Makefile config.status: creating src/appl/Makefile config.status: creating src/extra/Makefile config.status: creating src/extra/blas/Makefile config.status: creating 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src/modules/X11/Makefile config.status: creating src/modules/internet/Makefile config.status: creating src/modules/lapack/Makefile config.status: creating src/modules/vfonts/Makefile config.status: creating src/nmath/Makefile config.status: creating src/nmath/standalone/Makefile config.status: creating src/scripts/Makefile config.status: creating src/scripts/R.sh config.status: creating src/scripts/Rcmd config.status: creating src/scripts/f77_f2c config.status: creating src/scripts/javareconf config.status: creating src/scripts/mkinstalldirs config.status: creating src/scripts/pager config.status: creating src/scripts/rtags config.status: creating src/unix/Makefile config.status: creating tests/Makefile config.status: creating tests/Embedding/Makefile config.status: creating tests/Examples/Makefile config.status: creating tools/Makefile config.status: creating src/include/config.h config.status: executing libtool commands config.status: executing stamp-h commands R is now configured for powerpc-unknown-linux-gnu Source directory: . Installation directory: /usr C compiler: gcc -std=gnu99 -O3 -pipe -g Fortran 77 compiler: gfortran -O3 -pipe -g C++ compiler: g++ -O3 -pipe -g Fortran 90/95 compiler: gfortran -O3 -pipe -g Obj-C compiler: Interfaces supported: X11, tcltk External libraries: readline, BLAS(generic), LAPACK(generic), lzma Additional capabilities: PNG, JPEG, TIFF, NLS, cairo Options enabled: shared R library, R profiling, memory profiling Recommended packages: no touch configure-stamp *** make-arch *** /usr/bin/make CFLAGS="-O3 -pipe -g" \ CXXFLAGS="-O3 -pipe -g" \ FFLAGS="-O3 -pipe -g" \ FCFLAGS="-O3 -pipe -g" \ CC="gcc -std=gnu99" \ CXX=g++ \ F77=gfortran \ LDFLAGS="-Wl,-O1" \ R make[1]: Entering directory `/build/buildd/r-base-3.0.2' make[2]: Entering directory `/build/buildd/r-base-3.0.2/m4' make[2]: Nothing to be done for `R'. make[2]: Leaving directory `/build/buildd/r-base-3.0.2/m4' make[2]: Entering directory `/build/buildd/r-base-3.0.2/tools' make[2]: Nothing to be done for `R'. make[2]: Leaving directory `/build/buildd/r-base-3.0.2/tools' make[2]: Entering directory `/build/buildd/r-base-3.0.2/doc' make[3]: Entering directory `/build/buildd/r-base-3.0.2/doc/html' make[3]: Leaving directory `/build/buildd/r-base-3.0.2/doc/html' make[3]: Entering directory `/build/buildd/r-base-3.0.2/doc/manual' make[3]: Nothing to be done for `R'. make[3]: Leaving directory `/build/buildd/r-base-3.0.2/doc/manual' make[2]: Leaving directory `/build/buildd/r-base-3.0.2/doc' make[2]: Entering directory `/build/buildd/r-base-3.0.2/etc' make[2]: Leaving directory `/build/buildd/r-base-3.0.2/etc' make[2]: Entering directory `/build/buildd/r-base-3.0.2/share' make[2]: Leaving directory `/build/buildd/r-base-3.0.2/share' make[2]: Entering directory `/build/buildd/r-base-3.0.2/src' make[3]: Entering directory `/build/buildd/r-base-3.0.2/src/scripts' creating src/scripts/R.fe make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/scripts' mkdir -p -- ../../bin make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/scripts' make[3]: Leaving directory `/build/buildd/r-base-3.0.2/src/scripts' make[3]: Entering directory `/build/buildd/r-base-3.0.2/src/include' mkdir -p -- ../../include make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/include/R_ext' mkdir -p -- ../../../include/R_ext make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/include/R_ext' make[3]: Leaving directory `/build/buildd/r-base-3.0.2/src/include' make[3]: Entering directory `/build/buildd/r-base-3.0.2/src/extra' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/extra/tre' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/extra/tre' making regcomp.d from regcomp.c making regerror.d from regerror.c making regexec.d from regexec.c making tre-ast.d from tre-ast.c making tre-compile.d from tre-compile.c making tre-match-approx.d from tre-match-approx.c making tre-match-backtrack.d from tre-match-backtrack.c making tre-match-parallel.d from tre-match-parallel.c making tre-mem.d from tre-mem.c making tre-parse.d from tre-parse.c making tre-stack.d from tre-stack.c making xmalloc.d from xmalloc.c make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/extra/tre' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/extra/tre' gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -fvisibility=hidden -c regcomp.c -o regcomp.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -fvisibility=hidden -c regerror.c -o regerror.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -fvisibility=hidden -c regexec.c -o regexec.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -fvisibility=hidden -c tre-ast.c -o tre-ast.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -fvisibility=hidden -c tre-compile.c -o tre-compile.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -fvisibility=hidden -c tre-match-approx.c -o tre-match-approx.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -fvisibility=hidden -c tre-match-backtrack.c -o tre-match-backtrack.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -fvisibility=hidden -c tre-match-parallel.c -o tre-match-parallel.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -fvisibility=hidden -c tre-mem.c -o tre-mem.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -fvisibility=hidden -c tre-parse.c -o tre-parse.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -fvisibility=hidden -c tre-stack.c -o tre-stack.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -fvisibility=hidden -c xmalloc.c -o xmalloc.o rm -f libtre.a ar cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o xmalloc.o ranlib libtre.a make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/extra/tre' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/extra/tre' make[3]: Leaving directory `/build/buildd/r-base-3.0.2/src/extra' make[3]: Entering directory `/build/buildd/r-base-3.0.2/src/appl' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/appl' making integrate.d from integrate.c making interv.d from interv.c making maxcol.d from maxcol.c making optim.d from optim.c making pretty.d from pretty.c making uncmin.d from uncmin.c make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/appl' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/appl' gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c integrate.c -o integrate.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c interv.c -o interv.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c maxcol.c -o maxcol.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c optim.c -o optim.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c pretty.c -o pretty.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c uncmin.c -o uncmin.o gfortran -fopenmp -fpic -O3 -pipe -g -c dchdc.f -o dchdc.o gfortran -fopenmp -fpic -O3 -pipe -g -c dpbfa.f -o dpbfa.o gfortran -fopenmp -fpic -O3 -pipe -g -c dpbsl.f -o dpbsl.o gfortran -fopenmp -fpic -O3 -pipe -g -c dpoco.f -o dpoco.o gfortran -fopenmp -fpic -O3 -pipe -g -c dpodi.f -o dpodi.o gfortran -fopenmp -fpic -O3 -pipe -g -c dpofa.f -o dpofa.o gfortran -fopenmp -fpic -O3 -pipe -g -c dposl.f -o dposl.o gfortran -fopenmp -fpic -O3 -pipe -g -c dqrdc.f -o dqrdc.o gfortran -fopenmp -fpic -O3 -pipe -g -c dqrdc2.f -o dqrdc2.o gfortran -fopenmp -fpic -O3 -pipe -g -c dqrls.f -o dqrls.o gfortran -fopenmp -fpic -O3 -pipe -g -c dqrsl.f -o dqrsl.o gfortran -fopenmp -fpic -O3 -pipe -g -c dqrutl.f -o dqrutl.o gfortran -fopenmp -fpic -O3 -pipe -g -c dsvdc.f -o dsvdc.o gfortran -fopenmp -fpic -O3 -pipe -g -c dtrco.f -o dtrco.o gfortran -fopenmp -fpic -O3 -pipe -g -c dtrsl.f -o dtrsl.o rm -f libappl.a ar cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o ranlib libappl.a make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/appl' make[3]: Leaving directory `/build/buildd/r-base-3.0.2/src/appl' make[3]: Entering directory `/build/buildd/r-base-3.0.2/src/nmath' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/nmath' making mlutils.d from mlutils.c making d1mach.d from d1mach.c making i1mach.d from i1mach.c making fmax2.d from fmax2.c making fmin2.d from fmin2.c making fprec.d from fprec.c making fround.d from fround.c making ftrunc.d from ftrunc.c making sign.d from sign.c making fsign.d from fsign.c making imax2.d from imax2.c making imin2.d from imin2.c making chebyshev.d from chebyshev.c making log1p.d from log1p.c making expm1.d from expm1.c making lgammacor.d from lgammacor.c making gammalims.d from gammalims.c making stirlerr.d from stirlerr.c making bd0.d from bd0.c making gamma.d from gamma.c making lgamma.d from lgamma.c making gamma_cody.d from gamma_cody.c making beta.d from beta.c making lbeta.d from lbeta.c making polygamma.d from polygamma.c making bessel_i.d from bessel_i.c making bessel_j.d from bessel_j.c making bessel_k.d from bessel_k.c making bessel_y.d from bessel_y.c making choose.d from choose.c making snorm.d from snorm.c making sexp.d from sexp.c making dgamma.d from dgamma.c making pgamma.d from pgamma.c making qgamma.d from qgamma.c making rgamma.d from rgamma.c making dbeta.d from dbeta.c making pbeta.d from pbeta.c making qbeta.d from qbeta.c making rbeta.d from rbeta.c making dunif.d from dunif.c making punif.d from punif.c making qunif.d from qunif.c making runif.d from runif.c making dnorm.d from dnorm.c making pnorm.d from pnorm.c making qnorm.d from qnorm.c making rnorm.d from rnorm.c making dlnorm.d from dlnorm.c making plnorm.d from plnorm.c making qlnorm.d from qlnorm.c making rlnorm.d from rlnorm.c making df.d from df.c making pf.d from pf.c making qf.d from qf.c making rf.d from rf.c making dnf.d from dnf.c making dt.d from dt.c making pt.d from pt.c making qt.d from qt.c making rt.d from rt.c making dnt.d from dnt.c making dchisq.d from dchisq.c making pchisq.d from pchisq.c making qchisq.d from qchisq.c making rchisq.d from rchisq.c making rnchisq.d from rnchisq.c making dbinom.d from dbinom.c making pbinom.d from pbinom.c making qbinom.d from qbinom.c making rbinom.d from rbinom.c making rmultinom.d from rmultinom.c making dcauchy.d from dcauchy.c making pcauchy.d from pcauchy.c making qcauchy.d from qcauchy.c making rcauchy.d from rcauchy.c making dexp.d from dexp.c making pexp.d from pexp.c making qexp.d from qexp.c making rexp.d from rexp.c making dgeom.d from dgeom.c making pgeom.d from pgeom.c making qgeom.d from qgeom.c making rgeom.d from rgeom.c making dhyper.d from dhyper.c making phyper.d from phyper.c making qhyper.d from qhyper.c making rhyper.d from rhyper.c making dnbinom.d from dnbinom.c making pnbinom.d from pnbinom.c making qnbinom.d from qnbinom.c making rnbinom.d from rnbinom.c making dpois.d from dpois.c making ppois.d from ppois.c making qpois.d from qpois.c making rpois.d from rpois.c making dweibull.d from dweibull.c making pweibull.d from pweibull.c making qweibull.d from qweibull.c making rweibull.d from rweibull.c making dlogis.d from dlogis.c making plogis.d from plogis.c making qlogis.d from qlogis.c making rlogis.d from rlogis.c making dnchisq.d from dnchisq.c making pnchisq.d from pnchisq.c making qnchisq.d from qnchisq.c making dnbeta.d from dnbeta.c making pnbeta.d from pnbeta.c making qnbeta.d from qnbeta.c making pnf.d from pnf.c making pnt.d from pnt.c making qnf.d from qnf.c making qnt.d from qnt.c making ptukey.d from ptukey.c making qtukey.d from qtukey.c making toms708.d from toms708.c making wilcox.d from wilcox.c making signrank.d from signrank.c make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/nmath' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/nmath' gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c mlutils.c -o mlutils.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c d1mach.c -o d1mach.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c i1mach.c -o i1mach.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c fmax2.c -o fmax2.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c fmin2.c -o fmin2.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c fprec.c -o fprec.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c fround.c -o fround.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c ftrunc.c -o ftrunc.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c sign.c -o sign.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c fsign.c -o fsign.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c imax2.c -o imax2.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c imin2.c -o imin2.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c chebyshev.c -o chebyshev.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c log1p.c -o log1p.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c expm1.c -o expm1.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c lgammacor.c -o lgammacor.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c gammalims.c -o gammalims.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c stirlerr.c -o stirlerr.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c bd0.c -o bd0.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c gamma.c -o gamma.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c lgamma.c -o lgamma.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c gamma_cody.c -o gamma_cody.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c beta.c -o beta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c lbeta.c -o lbeta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c polygamma.c -o polygamma.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c bessel_i.c -o bessel_i.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c bessel_j.c -o bessel_j.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c bessel_k.c -o bessel_k.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c bessel_y.c -o bessel_y.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c choose.c -o choose.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c snorm.c -o snorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c sexp.c -o sexp.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c dgamma.c -o dgamma.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c pgamma.c -o pgamma.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c qgamma.c -o qgamma.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c rgamma.c -o rgamma.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c dbeta.c -o dbeta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c pbeta.c -o pbeta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c qbeta.c -o qbeta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c rbeta.c -o rbeta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c dunif.c -o dunif.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c punif.c -o punif.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c qunif.c -o qunif.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c runif.c -o runif.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c dnorm.c -o dnorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c pnorm.c -o pnorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c qnorm.c -o qnorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c rnorm.c -o rnorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c dlnorm.c -o dlnorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c plnorm.c -o plnorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c qlnorm.c -o qlnorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c rlnorm.c -o rlnorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c df.c -o df.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c pf.c -o pf.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c qf.c -o qf.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c rf.c -o rf.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c dnf.c -o dnf.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c dt.c -o dt.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c pt.c -o pt.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c qt.c -o qt.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c rt.c -o rt.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c dnt.c -o dnt.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c dchisq.c -o dchisq.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c pchisq.c -o pchisq.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c qchisq.c -o qchisq.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c rchisq.c -o rchisq.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c rnchisq.c -o rnchisq.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c dbinom.c -o dbinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c pbinom.c -o pbinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c qbinom.c -o qbinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c rbinom.c -o rbinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c rmultinom.c -o rmultinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c dcauchy.c -o dcauchy.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c pcauchy.c -o pcauchy.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c qcauchy.c -o qcauchy.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c rcauchy.c -o rcauchy.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c dexp.c -o dexp.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c pexp.c -o pexp.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c qexp.c -o qexp.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c rexp.c -o rexp.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c dgeom.c -o dgeom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c pgeom.c -o pgeom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c qgeom.c -o qgeom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c rgeom.c -o rgeom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c dhyper.c -o dhyper.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c phyper.c -o phyper.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c qhyper.c -o qhyper.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c rhyper.c -o rhyper.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c dnbinom.c -o dnbinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c pnbinom.c -o pnbinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c qnbinom.c -o qnbinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c rnbinom.c -o rnbinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c dpois.c -o dpois.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c ppois.c -o ppois.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c qpois.c -o qpois.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c rpois.c -o rpois.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c dweibull.c -o dweibull.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c pweibull.c -o pweibull.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c qweibull.c -o qweibull.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c rweibull.c -o rweibull.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c dlogis.c -o dlogis.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c plogis.c -o plogis.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c qlogis.c -o qlogis.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c rlogis.c -o rlogis.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c dnchisq.c -o dnchisq.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c pnchisq.c -o pnchisq.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c qnchisq.c -o qnchisq.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c dnbeta.c -o dnbeta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c pnbeta.c -o pnbeta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c qnbeta.c -o qnbeta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c pnf.c -o pnf.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c pnt.c -o pnt.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c qnf.c -o qnf.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c qnt.c -o qnt.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c ptukey.c -o ptukey.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c qtukey.c -o qtukey.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c toms708.c -o toms708.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c wilcox.c -o wilcox.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c signrank.c -o signrank.o rm -rf libnmath.a ar cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o ranlib libnmath.a make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/nmath' make[3]: Leaving directory `/build/buildd/r-base-3.0.2/src/nmath' make[3]: Entering directory `/build/buildd/r-base-3.0.2/src/unix' config.status: creating src/unix/Makefile make[3]: Leaving directory `/build/buildd/r-base-3.0.2/src/unix' make[3]: Entering directory `/build/buildd/r-base-3.0.2/src/unix' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/unix' making Rembedded.d from Rembedded.c making dynload.d from dynload.c making system.d from system.c making sys-unix.d from sys-unix.c making sys-std.d from sys-std.c making X11.d from X11.c make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/unix' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/unix' gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c Rembedded.c -o Rembedded.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c dynload.c -o dynload.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c system.c -o system.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c sys-unix.c -o sys-unix.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c sys-std.c -o sys-std.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c X11.c -o X11.o rm -rf libunix.a ar cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o ranlib libunix.a make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/unix' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/unix' gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -DR_HOME='"/build/buildd/r-base-3.0.2"' -o Rscript \ ./Rscript.c make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/unix' make[3]: Leaving directory `/build/buildd/r-base-3.0.2/src/unix' make[3]: Entering directory `/build/buildd/r-base-3.0.2/src/main' config.status: creating src/main/Makefile make[3]: Leaving directory `/build/buildd/r-base-3.0.2/src/main' make[3]: Entering directory `/build/buildd/r-base-3.0.2/src/main' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/main' making CommandLineArgs.d from CommandLineArgs.c making Rdynload.d from Rdynload.c making Renviron.d from Renviron.c making RNG.d from RNG.c making agrep.d from agrep.c making apply.d from apply.c making arithmetic.d from arithmetic.c making array.d from array.c making attrib.d from attrib.c making bind.d from bind.c making builtin.d from builtin.c making character.d from character.c making coerce.d from coerce.c making colors.d from colors.c making complex.d from complex.c making connections.d from connections.c making context.d from context.c making cum.d from cum.c making dcf.d from dcf.c making datetime.d from datetime.c making debug.d from debug.c making deparse.d from deparse.c making devices.d from devices.c making dotcode.d from dotcode.c making dounzip.d from dounzip.c making dstruct.d from dstruct.c making duplicate.d from duplicate.c making edit.d from edit.c making engine.d from engine.c making envir.d from envir.c making errors.d from errors.c making eval.d from eval.c making format.d from format.c making gevents.d from gevents.c making gram.d from gram.c making gram-ex.d from gram-ex.c making graphics.d from graphics.c making grep.d from grep.c making identical.d from identical.c making inlined.d from inlined.c making inspect.d from inspect.c making internet.d from internet.c making iosupport.d from iosupport.c making lapack.d from lapack.c making list.d from list.c making localecharset.d from localecharset.c making logic.d from logic.c making main.d from main.c making mapply.d from mapply.c making match.d from match.c making memory.d from memory.c making names.d from names.c making objects.d from objects.c making options.d from options.c making paste.d from paste.c making platform.d from platform.c making plot.d from plot.c making plot3d.d from plot3d.c making plotmath.d from plotmath.c making print.d from print.c making printarray.d from printarray.c making printvector.d from printvector.c making printutils.d from printutils.c making qsort.d from qsort.c making random.d from random.c making raw.d from raw.c making registration.d from registration.c making relop.d from relop.c making rlocale.d from rlocale.c making saveload.d from saveload.c making scan.d from scan.c making seq.d from seq.c making serialize.d from serialize.c making sort.d from sort.c making source.d from source.c making split.d from split.c making sprintf.d from sprintf.c making startup.d from startup.c making subassign.d from subassign.c making subscript.d from subscript.c making subset.d from subset.c making summary.d from summary.c making sysutils.d from sysutils.c making unique.d from unique.c making util.d from util.c making version.d from version.c making vfonts.d from vfonts.c making Rmain.d from Rmain.c making alloca.d from alloca.c making mkdtemp.d from mkdtemp.c making strdup.d from strdup.c making strncasecmp.d from strncasecmp.c make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/main' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/main' gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c CommandLineArgs.c -o CommandLineArgs.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c Rdynload.c -o Rdynload.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c Renviron.c -o Renviron.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c RNG.c -o RNG.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c agrep.c -o agrep.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c apply.c -o apply.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c arithmetic.c -o arithmetic.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c array.c -o array.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c attrib.c -o attrib.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c bind.c -o bind.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c builtin.c -o builtin.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c character.c -o character.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c coerce.c -o coerce.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c colors.c -o colors.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c complex.c -o complex.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c connections.c -o connections.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c context.c -o context.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c cum.c -o cum.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c dcf.c -o dcf.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c datetime.c -o datetime.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c debug.c -o debug.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c deparse.c -o deparse.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c devices.c -o devices.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c dotcode.c -o dotcode.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c dounzip.c -o dounzip.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c dstruct.c -o dstruct.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c duplicate.c -o duplicate.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c edit.c -o edit.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c engine.c -o engine.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c envir.c -o envir.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c errors.c -o errors.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c eval.c -o eval.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c format.c -o format.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c gevents.c -o gevents.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c gram.c -o gram.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c gram-ex.c -o gram-ex.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c graphics.c -o graphics.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c grep.c -o grep.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c identical.c -o identical.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c inlined.c -o inlined.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c inspect.c -o inspect.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c internet.c -o internet.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c iosupport.c -o iosupport.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c lapack.c -o lapack.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c list.c -o list.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c localecharset.c -o localecharset.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c logic.c -o logic.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c main.c -o main.o main.c: In function 'dummy_ii': main.c:1546:5: warning: function returns address of local variable [-Wreturn-local-addr] return (uintptr_t) ⅈ ^ gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c mapply.c -o mapply.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c match.c -o match.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c memory.c -o memory.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c names.c -o names.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c objects.c -o objects.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c options.c -o options.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c paste.c -o paste.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c platform.c -o platform.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c plot.c -o plot.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c plot3d.c -o plot3d.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c plotmath.c -o plotmath.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c print.c -o print.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c printarray.c -o printarray.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c printvector.c -o printvector.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c printutils.c -o printutils.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c qsort.c -o qsort.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c random.c -o random.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c raw.c -o raw.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c registration.c -o registration.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c relop.c -o relop.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c rlocale.c -o rlocale.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c saveload.c -o saveload.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c scan.c -o scan.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c seq.c -o seq.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c serialize.c -o serialize.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c sort.c -o sort.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c source.c -o source.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c split.c -o split.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c sprintf.c -o sprintf.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c startup.c -o startup.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c subassign.c -o subassign.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c subscript.c -o subscript.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c subset.c -o subset.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c summary.c -o summary.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c sysutils.c -o sysutils.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c unique.c -o unique.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c util.c -o util.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c version.c -o version.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c vfonts.c -o vfonts.o gfortran -fopenmp -fpic -O3 -pipe -g -c xxxpr.f -o xxxpr.o gcc -std=gnu99 -shared -fopenmp -Wl,-O1 -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o names.o objects.o options.o paste.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o unique.o util.o version.o vfonts.o xxxpr.o `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/tre/libtre.a -lblas -lgfortran -lm -lreadline -lpcre -llzma -lbz2 -lz -lrt -ldl -lm make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/main' mkdir -p -- /build/buildd/r-base-3.0.2/bin/exec mkdir -p -- /build/buildd/r-base-3.0.2/lib make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/main' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/main' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/main' gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c Rmain.c -o Rmain.o gcc -std=gnu99 -Wl,--export-dynamic -fopenmp -Wl,-O1 -o R.bin Rmain.o -L../../lib -lR make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/main' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/main' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/main' make[3]: Leaving directory `/build/buildd/r-base-3.0.2/src/main' make[3]: Entering directory `/build/buildd/r-base-3.0.2/src/modules' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/internet' making Rhttpd.d from Rhttpd.c making Rsock.d from Rsock.c making internet.d from internet.c making nanoftp.d from nanoftp.c making nanohttp.d from nanohttp.c making sock.d from sock.c making sockconn.d from sockconn.c make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/internet' make[5]: `Makedeps' is up to date. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/internet' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/internet' gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -fvisibility=hidden -c Rhttpd.c -o Rhttpd.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -fvisibility=hidden -c Rsock.c -o Rsock.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -fvisibility=hidden -c internet.c -o internet.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -fvisibility=hidden -c nanoftp.c -o nanoftp.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -fvisibility=hidden -c nanohttp.c -o nanohttp.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -fvisibility=hidden -c sock.c -o sock.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -fvisibility=hidden -c sockconn.c -o sockconn.o gcc -std=gnu99 -shared -Wl,-O1 -o internet.so Rhttpd.o Rsock.o internet.o nanoftp.o nanohttp.o sock.o sockconn.o -L../../../lib -lR make[6]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/internet' mkdir -p -- /build/buildd/r-base-3.0.2/modules make[6]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/internet' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/internet' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/internet' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/lapack' making Lapack.d from Lapack.c make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/lapack' make[5]: `Makedeps' is up to date. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/lapack' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/lapack' gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c Lapack.c -o Lapack.o gcc -std=gnu99 -shared -Wl,-O1 -o lapack.so Lapack.o -L../../../lib -lR -llapack -lblas -lgfortran -lm make[6]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/lapack' make[6]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/lapack' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/lapack' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/lapack' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/vfonts' making g_alab_her.d from g_alab_her.c making g_cntrlify.d from g_cntrlify.c making g_fontdb.d from g_fontdb.c making g_her_glyph.d from g_her_glyph.c make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/vfonts' make[5]: `Makedeps' is up to date. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/vfonts' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/vfonts' gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c g_alab_her.c -o g_alab_her.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c g_cntrlify.c -o g_cntrlify.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c g_fontdb.c -o g_fontdb.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c g_her_glyph.c -o g_her_glyph.o gcc -std=gnu99 -shared -Wl,-O1 -o vfonts.so g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o -L../../../lib -lR -lm make[6]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/vfonts' make[6]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/vfonts' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/vfonts' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/vfonts' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/X11' making devX11.d from devX11.c making rotated.d from rotated.c making rbitmap.d from rbitmap.c make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/X11' make[5]: `Makedeps' is up to date. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/X11' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/X11' gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/powerpc-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c devX11.c -o devX11.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/powerpc-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c rotated.c -o rotated.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/powerpc-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c rbitmap.c -o rbitmap.o gcc -std=gnu99 -shared -Wl,-O1 -o R_X11.so devX11.o rotated.o rbitmap.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng12 -lz -lcairo -lX11 -lXext -lX11 -lXt -ltiff -ljpeg -lpng -lz -L../../../lib -lR -lm gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/powerpc-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c dataentry.c -o dataentry.o gcc -std=gnu99 -shared -Wl,-O1 -o R_de.so dataentry.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng12 -lz -lcairo -lX11 -lXext -lX11 -lXt -L../../../lib -lR -lm make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/X11' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/X11' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/X11' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/X11' make[3]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules' make[3]: Entering directory `/build/buildd/r-base-3.0.2/src/library' mkdir -p -- ../../library make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/profile' building system startup profile mkdir -p -- ../../../library/base/R make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/profile' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/translations' building package 'translations' mkdir -p -- ../../../library/translations make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/translations' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/translations' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/translations' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/base' building package 'base' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/base' mkdir -p -- ../../../library/base/demo make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/base' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/base' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/tools' building package 'tools' mkdir -p -- ../../../library/tools make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/tools' mkdir -p -- ../../../library/tools/R make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/tools' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/tools' make[6]: Entering directory `/build/buildd/r-base-3.0.2/src/library/tools/src' making text.d from text.c making init.d from init.c making Rmd5.d from Rmd5.c making md5.d from md5.c making signals.d from signals.c making install.d from install.c making getfmts.d from getfmts.c making http.d from http.c making gramLatex.d from gramLatex.c making gramRd.d from gramRd.c gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O3 -pipe -g -c text.c -o text.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O3 -pipe -g -c init.c -o init.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O3 -pipe -g -c Rmd5.c -o Rmd5.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O3 -pipe -g -c md5.c -o md5.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O3 -pipe -g -c signals.c -o signals.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O3 -pipe -g -c install.c -o install.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O3 -pipe -g -c getfmts.c -o getfmts.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O3 -pipe -g -c http.c -o http.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O3 -pipe -g -c gramLatex.c -o gramLatex.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O3 -pipe -g -c gramRd.c -o gramRd.o gcc -std=gnu99 -shared -Wl,-O1 -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o -L../../../../lib -lR make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/tools/src' make[7]: `Makedeps' is up to date. make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/tools/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/tools/src' mkdir -p -- ../../../../library/tools/libs make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/tools/src' make[6]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/tools/src' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/tools' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/tools' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/compiler' building package 'compiler' mkdir -p -- ../../../library/compiler make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/compiler' mkdir -p -- ../../../library/compiler/R make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/compiler' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/compiler' byte-compiling package 'compiler' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/compiler' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/compiler' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/base' byte-compiling package 'base' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/base' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/tools' byte-compiling package 'tools' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/tools' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/utils' building package 'utils' mkdir -p -- ../../../library/utils mkdir -p -- ../../../library/utils/doc make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/utils' mkdir -p -- ../../../library/utils/R mkdir -p -- ../../../library/utils/Sweave mkdir -p -- ../../../library/utils/misc make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/utils' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/utils' make[6]: Entering directory `/build/buildd/r-base-3.0.2/src/library/utils/src' making init.d from init.c making io.d from io.c making size.d from size.c making sock.d from sock.c making stubs.d from stubs.c making utils.d from utils.c gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O3 -pipe -g -c init.c -o init.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O3 -pipe -g -c io.c -o io.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O3 -pipe -g -c size.c -o size.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O3 -pipe -g -c sock.c -o sock.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O3 -pipe -g -c stubs.c -o stubs.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O3 -pipe -g -c utils.c -o utils.o gcc -std=gnu99 -shared -Wl,-O1 -o utils.so init.o io.o size.o sock.o stubs.o utils.o -L../../../../lib -lR make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/utils/src' make[7]: `Makedeps' is up to date. make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/utils/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/utils/src' mkdir -p -- ../../../../library/utils/libs make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/utils/src' make[6]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/utils/src' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/utils' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/utils' byte-compiling package 'utils' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/utils' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/utils' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grDevices' building package 'grDevices' mkdir -p -- ../../../library/grDevices make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grDevices' mkdir -p -- ../../../library/grDevices/R mkdir -p -- ../../../library/grDevices/afm mkdir -p -- ../../../library/grDevices/enc mkdir -p -- ../../../library/grDevices/icc make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grDevices' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grDevices' make[6]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src' making axis_scales.d from axis_scales.c making chull.d from chull.c making devices.d from devices.c making init.d from init.c making stubs.d from stubs.c making colors.d from colors.c making devCairo.d from devCairo.c making devPicTeX.d from devPicTeX.c making devPS.d from devPS.c making devQuartz.d from devQuartz.c gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -O3 -pipe -g -c axis_scales.c -o axis_scales.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -O3 -pipe -g -c chull.c -o chull.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -O3 -pipe -g -c devices.c -o devices.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -O3 -pipe -g -c init.c -o init.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -O3 -pipe -g -c stubs.c -o stubs.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -O3 -pipe -g -c colors.c -o colors.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -O3 -pipe -g -c devCairo.c -o devCairo.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -O3 -pipe -g -c devPicTeX.c -o devPicTeX.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -O3 -pipe -g -c devPS.c -o devPS.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -O3 -pipe -g -c devQuartz.c -o devQuartz.o gcc -std=gnu99 -shared -Wl,-O1 -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o devCairo.o devPicTeX.o devPS.o devQuartz.o -lz -L../../../../lib -lR make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src' make[7]: `Makedeps' is up to date. make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src' mkdir -p -- ../../../../library/grDevices/libs make[8]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src/cairo' making cairoBM.d from cairoBM.c make[9]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src/cairo' make[9]: `Makedeps' is up to date. make[9]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src/cairo' make[9]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src/cairo' make[10]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src/cairo' gcc -std=gnu99 -I. -I../../../../../src/include -I../../../../../src/include -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/powerpc-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../../../src/modules/X11 -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -c cairoBM.c -o cairoBM.o gcc -std=gnu99 -shared -Wl,-O1 -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng12 -lz -lcairo -ltiff -ljpeg -lpng -lz -L../../../../../lib -lR -lm make[10]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src/cairo' make[9]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src/cairo' make[8]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src/cairo' make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src' make[6]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grDevices' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grDevices' byte-compiling package 'grDevices' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grDevices' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grDevices' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/graphics' building package 'graphics' mkdir -p -- ../../../library/graphics make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/graphics' mkdir -p -- ../../../library/graphics/R make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/graphics' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/graphics' make[6]: Entering directory `/build/buildd/r-base-3.0.2/src/library/graphics/src' making init.d from init.c making base.d from base.c making graphics.d from graphics.c making par.d from par.c making plot.d from plot.c making plot3d.d from plot3d.c making stem.d from stem.c gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O3 -pipe -g -c init.c -o init.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O3 -pipe -g -c base.c -o base.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O3 -pipe -g -c graphics.c -o graphics.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O3 -pipe -g -c par.c -o par.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O3 -pipe -g -c plot.c -o plot.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O3 -pipe -g -c plot3d.c -o plot3d.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -O3 -pipe -g -c stem.c -o stem.o gcc -std=gnu99 -shared -Wl,-O1 -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/graphics/src' make[7]: `Makedeps' is up to date. make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/graphics/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/graphics/src' mkdir -p -- ../../../../library/graphics/libs make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/graphics/src' make[6]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/graphics/src' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/graphics' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/graphics' byte-compiling package 'graphics' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/graphics' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/graphics' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/stats' building package 'stats' mkdir -p -- ../../../library/stats make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/stats' mkdir -p -- ../../../library/stats/R make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/stats' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/stats' make[6]: Entering directory `/build/buildd/r-base-3.0.2/src/library/stats/src' making init.d from init.c making kmeans.d from kmeans.c making ansari.d from ansari.c making bandwidths.d from bandwidths.c making chisqsim.d from chisqsim.c making d2x2xk.d from d2x2xk.c making fexact.d from fexact.c making kendall.d from kendall.c making ks.d from ks.c making line.d from line.c making smooth.d from smooth.c making prho.d from prho.c making swilk.d from swilk.c making ksmooth.d from ksmooth.c making loessc.d from loessc.c making monoSpl.d from monoSpl.c making isoreg.d from isoreg.c making Srunmed.d from Srunmed.c making dblcen.d from dblcen.c making distance.d from distance.c making hclust-utils.d from hclust-utils.c making nls.d from nls.c making rWishart.d from rWishart.c making HoltWinters.d from HoltWinters.c making PPsum.d from PPsum.c making arima.d from arima.c making burg.d from burg.c making filter.d from filter.c making mAR.d from mAR.c making pacf.d from pacf.c making starma.d from starma.c making port.d from port.c making family.d from family.c making sbart.d from sbart.c making approx.d from approx.c making loglin.d from loglin.c making lowess.d from lowess.c making massdist.d from massdist.c making splines.d from splines.c making lm.d from lm.c making complete_cases.d from complete_cases.c making cov.d from cov.c making deriv.d from deriv.c making fft.d from fft.c making fourier.d from fourier.c making model.d from model.c making optim.d from optim.c making optimize.d from optimize.c making integrate.d from integrate.c making random.d from random.c making distn.d from distn.c making zeroin.d from zeroin.c making rcont.d from rcont.c making influence.d from influence.c gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c init.c -o init.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c kmeans.c -o kmeans.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c ansari.c -o ansari.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c bandwidths.c -o bandwidths.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c chisqsim.c -o chisqsim.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c d2x2xk.c -o d2x2xk.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c fexact.c -o fexact.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c kendall.c -o kendall.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c ks.c -o ks.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c line.c -o line.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c smooth.c -o smooth.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c prho.c -o prho.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c swilk.c -o swilk.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c ksmooth.c -o ksmooth.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c loessc.c -o loessc.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c monoSpl.c -o monoSpl.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c isoreg.c -o isoreg.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c Srunmed.c -o Srunmed.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c dblcen.c -o dblcen.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c distance.c -o distance.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c hclust-utils.c -o hclust-utils.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c nls.c -o nls.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c rWishart.c -o rWishart.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c HoltWinters.c -o HoltWinters.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c PPsum.c -o PPsum.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c arima.c -o arima.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c burg.c -o burg.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c filter.c -o filter.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c mAR.c -o mAR.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c pacf.c -o pacf.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c starma.c -o starma.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c port.c -o port.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c family.c -o family.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c sbart.c -o sbart.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c approx.c -o approx.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c loglin.c -o loglin.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c lowess.c -o lowess.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c massdist.c -o massdist.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c splines.c -o splines.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c lm.c -o lm.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c complete_cases.c -o complete_cases.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c cov.c -o cov.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c deriv.c -o deriv.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c fft.c -o fft.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c fourier.c -o fourier.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c model.c -o model.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c optim.c -o optim.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c optimize.c -o optimize.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c integrate.c -o integrate.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c random.c -o random.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c distn.c -o distn.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c zeroin.c -o zeroin.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c rcont.c -o rcont.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O3 -pipe -g -c influence.c -o influence.o gfortran -fvisibility=hidden -fpic -O3 -pipe -g -c bsplvd.f -o bsplvd.o gfortran -fvisibility=hidden -fpic -O3 -pipe -g -c bvalue.f -o bvalue.o gfortran -fvisibility=hidden -fpic -O3 -pipe -g -c bvalus.f -o bvalus.o gfortran -fvisibility=hidden -fpic -O3 -pipe -g -c loessf.f -o loessf.o gfortran -fvisibility=hidden -fpic -O3 -pipe -g -c ppr.f -o ppr.o gfortran -fvisibility=hidden -fpic -O3 -pipe -g -c qsbart.f -o qsbart.o gfortran -fvisibility=hidden -fpic -O3 -pipe -g -c sgram.f -o sgram.o gfortran -fvisibility=hidden -fpic -O3 -pipe -g -c sinerp.f -o sinerp.o gfortran -fvisibility=hidden -fpic -O3 -pipe -g -c sslvrg.f -o sslvrg.o gfortran -fvisibility=hidden -fpic -O3 -pipe -g -c stxwx.f -o stxwx.o gfortran -fvisibility=hidden -fpic -O3 -pipe -g -c hclust.f -o hclust.o gfortran -fvisibility=hidden -fpic -O3 -pipe -g -c kmns.f -o kmns.o gfortran -fvisibility=hidden -fpic -O3 -pipe -g -c eureka.f -o eureka.o gfortran -fvisibility=hidden -fpic -O3 -pipe -g -c stl.f -o stl.o gfortran -fpic -O3 -pipe -g -ffloat-store -c portsrc.f -o portsrc.o gfortran -fvisibility=hidden -fpic -O3 -pipe -g -c lminfl.f -o lminfl.o gcc -std=gnu99 -shared -Wl,-O1 -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -llapack -lblas -lgfortran -lm -L../../../../lib -lR make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/stats/src' make[7]: `Makedeps' is up to date. make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/stats/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/stats/src' mkdir -p -- ../../../../library/stats/libs make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/stats/src' make[6]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/stats/src' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/stats' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/stats' byte-compiling package 'stats' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/stats' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/stats' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/datasets' building package 'datasets' mkdir -p -- ../../../library/datasets make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/datasets' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/datasets' mkdir -p -- ../../../library/datasets/data make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/datasets' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/methods' building package 'methods' mkdir -p -- ../../../library/methods make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/methods' mkdir -p -- ../../../library/methods/R make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/methods' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/methods' make[6]: Entering directory `/build/buildd/r-base-3.0.2/src/library/methods/src' making do_substitute_direct.d from do_substitute_direct.c making init.d from init.c making methods_list_dispatch.d from methods_list_dispatch.c making slot.d from slot.c making class_support.d from class_support.c making tests.d from tests.c making utils.d from utils.c gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -O3 -pipe -g -c do_substitute_direct.c -o do_substitute_direct.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -O3 -pipe -g -c init.c -o init.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -O3 -pipe -g -c methods_list_dispatch.c -o methods_list_dispatch.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -O3 -pipe -g -c slot.c -o slot.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -O3 -pipe -g -c class_support.c -o class_support.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -O3 -pipe -g -c tests.c -o tests.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -O3 -pipe -g -c utils.c -o utils.o gcc -std=gnu99 -shared -Wl,-O1 -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/methods/src' make[7]: `Makedeps' is up to date. make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/methods/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/methods/src' mkdir -p -- ../../../../library/methods/libs make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/methods/src' make[6]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/methods/src' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/methods' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/methods' byte-compiling 'methods' initializing class and method definitions ... done make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/methods' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/methods' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grid' building package 'grid' mkdir -p -- ../../../library/grid mkdir -p -- ../../../library/grid/doc make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grid' mkdir -p -- ../../../library/grid/R make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grid' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grid' make[6]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grid/src' making gpar.d from gpar.c making grid.d from grid.c making just.d from just.c making layout.d from layout.c making matrix.d from matrix.c making register.d from register.c making state.d from state.c making unit.d from unit.c making util.d from util.c making viewport.d from viewport.c gcc -std=gnu99 -I../../../../include -DNDEBUG -fvisibility=hidden -fpic -O3 -pipe -g -c gpar.c -o gpar.o gcc -std=gnu99 -I../../../../include -DNDEBUG -fvisibility=hidden -fpic -O3 -pipe -g -c grid.c -o grid.o gcc -std=gnu99 -I../../../../include -DNDEBUG -fvisibility=hidden -fpic -O3 -pipe -g -c just.c -o just.o gcc -std=gnu99 -I../../../../include -DNDEBUG -fvisibility=hidden -fpic -O3 -pipe -g -c layout.c -o layout.o gcc -std=gnu99 -I../../../../include -DNDEBUG -fvisibility=hidden -fpic -O3 -pipe -g -c matrix.c -o matrix.o gcc -std=gnu99 -I../../../../include -DNDEBUG -fvisibility=hidden -fpic -O3 -pipe -g -c register.c -o register.o gcc -std=gnu99 -I../../../../include -DNDEBUG -fvisibility=hidden -fpic -O3 -pipe -g -c state.c -o state.o gcc -std=gnu99 -I../../../../include -DNDEBUG -fvisibility=hidden -fpic -O3 -pipe -g -c unit.c -o unit.o gcc -std=gnu99 -I../../../../include -DNDEBUG -fvisibility=hidden -fpic -O3 -pipe -g -c util.c -o util.o gcc -std=gnu99 -I../../../../include -DNDEBUG -fvisibility=hidden -fpic -O3 -pipe -g -c viewport.c -o viewport.o gcc -std=gnu99 -shared -Wl,-O1 -o grid.so gpar.o grid.o just.o layout.o matrix.o register.o state.o unit.o util.o viewport.o -L../../../../lib -lR make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grid/src' make[7]: `Makedeps' is up to date. make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grid/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grid/src' mkdir -p -- ../../../../library/grid/libs make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grid/src' make[6]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grid/src' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grid' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grid' byte-compiling package 'grid' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grid' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grid' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/splines' building package 'splines' mkdir -p -- ../../../library/splines make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/splines' mkdir -p -- ../../../library/splines/R make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/splines' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/splines' make[6]: Entering directory `/build/buildd/r-base-3.0.2/src/library/splines/src' making splines.d from splines.c gcc -std=gnu99 -I../../../../include -DNDEBUG -fpic -O3 -pipe -g -c splines.c -o splines.o gcc -std=gnu99 -shared -Wl,-O1 -o splines.so splines.o -L../../../../lib -lR make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/splines/src' make[7]: `Makedeps' is up to date. make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/splines/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/splines/src' mkdir -p -- ../../../../library/splines/libs make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/splines/src' make[6]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/splines/src' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/splines' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/splines' byte-compiling package 'splines' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/splines' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/splines' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/stats4' building package 'stats4' mkdir -p -- ../../../library/stats4 make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/stats4' mkdir -p -- ../../../library/stats4/R make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/stats4' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/stats4' byte-compiling package 'stats4' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/stats4' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/stats4' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/tcltk' building package 'tcltk' mkdir -p -- ../../../library/tcltk/R make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/tcltk' mkdir -p -- ../../../library/tcltk/exec make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/tcltk' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/tcltk/src' making init.d from init.c making tcltk.d from tcltk.c making tcltk_unix.d from tcltk_unix.c gcc -std=gnu99 -I../../../../include -DNDEBUG -I/usr/include/tcl8.5 -I/usr/include/tcl8.5 -fpic -O3 -pipe -g -c init.c -o init.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I/usr/include/tcl8.5 -I/usr/include/tcl8.5 -fpic -O3 -pipe -g -c tcltk.c -o tcltk.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I/usr/include/tcl8.5 -I/usr/include/tcl8.5 -fpic -O3 -pipe -g -c tcltk_unix.c -o tcltk_unix.o gcc -std=gnu99 -shared -Wl,-O1 -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/lib/powerpc-linux-gnu -ltcl8.5 -L/usr/lib/powerpc-linux-gnu -ltk8.5 -lX11 -lXss -lXext -lm -L../../../../lib -lR make[6]: Entering directory `/build/buildd/r-base-3.0.2/src/library/tcltk/src' make[6]: `Makedeps' is up to date. make[6]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/tcltk/src' make[6]: Entering directory `/build/buildd/r-base-3.0.2/src/library/tcltk/src' mkdir -p -- ../../../../library/tcltk/libs make[6]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/tcltk/src' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/tcltk/src' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/tcltk' byte-compiling package 'tcltk' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/tcltk' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/tcltk' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/parallel' building package 'parallel' mkdir -p -- ../../../library/parallel mkdir -p -- ../../../library/parallel/doc make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/parallel' mkdir -p -- ../../../library/parallel/R make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/parallel' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/parallel' make[6]: Entering directory `/build/buildd/r-base-3.0.2/src/library/parallel/src' making init.d from init.c making rngstream.d from rngstream.c making fork.d from fork.c gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -O3 -pipe -g -c init.c -o init.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -O3 -pipe -g -c rngstream.c -o rngstream.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -O3 -pipe -g -c fork.c -o fork.o gcc -std=gnu99 -shared -Wl,-O1 -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/parallel/src' make[7]: `Makedeps' is up to date. make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/parallel/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/parallel/src' mkdir -p -- ../../../../library/parallel/libs make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/parallel/src' make[6]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/parallel/src' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/parallel' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/parallel' byte-compiling package 'parallel' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/parallel' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/parallel' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/base' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/base' installing parsed NAMESPACE files make[3]: Leaving directory `/build/buildd/r-base-3.0.2/src/library' make[2]: Leaving directory `/build/buildd/r-base-3.0.2/src' make[2]: Entering directory `/build/buildd/r-base-3.0.2/tests' make[2]: Nothing to be done for `R'. make[2]: Leaving directory `/build/buildd/r-base-3.0.2/tests' you should 'make docs' now ... make[1]: Leaving directory `/build/buildd/r-base-3.0.2' (cd src/nmath/standalone; \ /usr/bin/make CFLAGS="-O3 -pipe -g -D_REENTRANT" \ CXXFLAGS="-O3 -pipe -g -D_REENTRANT" \ FFLAGS="-O3 -pipe -g -D_REENTRANT" \ CC="gcc -std=gnu99" \ CXX=g++ \ F77=gfortran \ libRmath_la_LDFLAGS=-Wl,-soname,libRmath.so.1 \ shared static ) make[1]: Entering directory `/build/buildd/r-base-3.0.2/src/nmath/standalone' (cd ../../include; /usr/bin/make Rmath.h) make[2]: Entering directory `/build/buildd/r-base-3.0.2/src/include' make[2]: `Rmath.h' is up to date. make[2]: Leaving directory `/build/buildd/r-base-3.0.2/src/include' Copying source files make[2]: Entering directory `/build/buildd/r-base-3.0.2/src/nmath/standalone' making mlutils.d from mlutils.c making d1mach.d from d1mach.c making i1mach.d from i1mach.c making fmax2.d from fmax2.c making fmin2.d from fmin2.c making fprec.d from fprec.c making fround.d from fround.c making ftrunc.d from ftrunc.c making sign.d from sign.c making fsign.d from fsign.c making imax2.d from imax2.c making imin2.d from imin2.c making chebyshev.d from chebyshev.c making log1p.d from log1p.c making expm1.d from expm1.c making lgammacor.d from lgammacor.c making gammalims.d from gammalims.c making stirlerr.d from stirlerr.c making bd0.d from bd0.c making gamma.d from gamma.c making lgamma.d from lgamma.c making gamma_cody.d from gamma_cody.c making beta.d from beta.c making lbeta.d from lbeta.c making polygamma.d from polygamma.c making bessel_i.d from bessel_i.c making bessel_j.d from bessel_j.c making bessel_k.d from bessel_k.c making bessel_y.d from bessel_y.c making choose.d from choose.c making snorm.d from snorm.c making sexp.d from sexp.c making dgamma.d from dgamma.c making pgamma.d from pgamma.c making qgamma.d from qgamma.c making rgamma.d from rgamma.c making dbeta.d from dbeta.c making pbeta.d from pbeta.c making qbeta.d from qbeta.c making rbeta.d from rbeta.c making dunif.d from dunif.c making punif.d from punif.c making qunif.d from qunif.c making runif.d from runif.c making dnorm.d from dnorm.c making pnorm.d from pnorm.c making qnorm.d from qnorm.c making rnorm.d from rnorm.c making dlnorm.d from dlnorm.c making plnorm.d from plnorm.c making qlnorm.d from qlnorm.c making rlnorm.d from rlnorm.c making df.d from df.c making pf.d from pf.c making qf.d from qf.c making rf.d from rf.c making dnf.d from dnf.c making dt.d from dt.c making pt.d from pt.c making qt.d from qt.c making rt.d from rt.c making dnt.d from dnt.c making dchisq.d from dchisq.c making pchisq.d from pchisq.c making qchisq.d from qchisq.c making rchisq.d from rchisq.c making rnchisq.d from rnchisq.c making dbinom.d from dbinom.c making pbinom.d from pbinom.c making qbinom.d from qbinom.c making rbinom.d from rbinom.c making rmultinom.d from rmultinom.c making dcauchy.d from dcauchy.c making pcauchy.d from pcauchy.c making qcauchy.d from qcauchy.c making rcauchy.d from rcauchy.c making dexp.d from dexp.c making pexp.d from pexp.c making qexp.d from qexp.c making rexp.d from rexp.c making dgeom.d from dgeom.c making pgeom.d from pgeom.c making qgeom.d from qgeom.c making rgeom.d from rgeom.c making dhyper.d from dhyper.c making phyper.d from phyper.c making qhyper.d from qhyper.c making rhyper.d from rhyper.c making dnbinom.d from dnbinom.c making pnbinom.d from pnbinom.c making qnbinom.d from qnbinom.c making rnbinom.d from rnbinom.c making dpois.d from dpois.c making ppois.d from ppois.c making qpois.d from qpois.c making rpois.d from rpois.c making dweibull.d from dweibull.c making pweibull.d from pweibull.c making qweibull.d from qweibull.c making rweibull.d from rweibull.c making dlogis.d from dlogis.c making plogis.d from plogis.c making qlogis.d from qlogis.c making rlogis.d from rlogis.c making dnchisq.d from dnchisq.c making pnchisq.d from pnchisq.c making qnchisq.d from qnchisq.c making dnbeta.d from dnbeta.c making pnbeta.d from pnbeta.c making qnbeta.d from qnbeta.c making pnf.d from pnf.c making pnt.d from pnt.c making qnf.d from qnf.c making qnt.d from qnt.c making ptukey.d from ptukey.c making qtukey.d from qtukey.c making toms708.d from toms708.c making wilcox.d from wilcox.c making signrank.d from signrank.c making std_unif.d from std_unif.c make[2]: Leaving directory `/build/buildd/r-base-3.0.2/src/nmath/standalone' make[2]: Entering directory `/build/buildd/r-base-3.0.2/src/nmath/standalone' gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c mlutils.c -o mlutils.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c d1mach.c -o d1mach.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c i1mach.c -o i1mach.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c fmax2.c -o fmax2.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c fmin2.c -o fmin2.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c fprec.c -o fprec.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c fround.c -o fround.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c ftrunc.c -o ftrunc.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c sign.c -o sign.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c fsign.c -o fsign.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c imax2.c -o imax2.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c imin2.c -o imin2.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c chebyshev.c -o chebyshev.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c log1p.c -o log1p.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c expm1.c -o expm1.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c lgammacor.c -o lgammacor.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c gammalims.c -o gammalims.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c stirlerr.c -o stirlerr.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c bd0.c -o bd0.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c gamma.c -o gamma.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c lgamma.c -o lgamma.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c gamma_cody.c -o gamma_cody.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c beta.c -o beta.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c lbeta.c -o lbeta.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c polygamma.c -o polygamma.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c bessel_i.c -o bessel_i.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c bessel_j.c -o bessel_j.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c bessel_k.c -o bessel_k.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c bessel_y.c -o bessel_y.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c choose.c -o choose.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c snorm.c -o snorm.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c sexp.c -o sexp.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c dgamma.c -o dgamma.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c pgamma.c -o pgamma.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c qgamma.c -o qgamma.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c rgamma.c -o rgamma.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c dbeta.c -o dbeta.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c pbeta.c -o pbeta.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c qbeta.c -o qbeta.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c rbeta.c -o rbeta.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c dunif.c -o dunif.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c punif.c -o punif.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c qunif.c -o qunif.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c runif.c -o runif.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c dnorm.c -o dnorm.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c pnorm.c -o pnorm.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c qnorm.c -o qnorm.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c rnorm.c -o rnorm.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c dlnorm.c -o dlnorm.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c plnorm.c -o plnorm.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c qlnorm.c -o qlnorm.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c rlnorm.c -o rlnorm.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c df.c -o df.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c pf.c -o pf.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c qf.c -o qf.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c rf.c -o rf.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c dnf.c -o dnf.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c dt.c -o dt.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c pt.c -o pt.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c qt.c -o qt.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c rt.c -o rt.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c dnt.c -o dnt.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c dchisq.c -o dchisq.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c pchisq.c -o pchisq.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c qchisq.c -o qchisq.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c rchisq.c -o rchisq.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c rnchisq.c -o rnchisq.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c dbinom.c -o dbinom.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c pbinom.c -o pbinom.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c qbinom.c -o qbinom.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c rbinom.c -o rbinom.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c rmultinom.c -o rmultinom.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c dcauchy.c -o dcauchy.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c pcauchy.c -o pcauchy.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c qcauchy.c -o qcauchy.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c rcauchy.c -o rcauchy.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c dexp.c -o dexp.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c pexp.c -o pexp.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c qexp.c -o qexp.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c rexp.c -o rexp.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c dgeom.c -o dgeom.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c pgeom.c -o pgeom.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c qgeom.c -o qgeom.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c rgeom.c -o rgeom.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c dhyper.c -o dhyper.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c phyper.c -o phyper.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c qhyper.c -o qhyper.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c rhyper.c -o rhyper.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c dnbinom.c -o dnbinom.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c pnbinom.c -o pnbinom.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c qnbinom.c -o qnbinom.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c rnbinom.c -o rnbinom.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c dpois.c -o dpois.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c ppois.c -o ppois.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c qpois.c -o qpois.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c rpois.c -o rpois.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c dweibull.c -o dweibull.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c pweibull.c -o pweibull.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c qweibull.c -o qweibull.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c rweibull.c -o rweibull.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c dlogis.c -o dlogis.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c plogis.c -o plogis.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c qlogis.c -o qlogis.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c rlogis.c -o rlogis.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c dnchisq.c -o dnchisq.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c pnchisq.c -o pnchisq.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c qnchisq.c -o qnchisq.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c dnbeta.c -o dnbeta.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c pnbeta.c -o pnbeta.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c qnbeta.c -o qnbeta.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c pnf.c -o pnf.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c pnt.c -o pnt.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c qnf.c -o qnf.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c qnt.c -o qnt.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c ptukey.c -o ptukey.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c qtukey.c -o qtukey.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c toms708.c -o toms708.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c wilcox.c -o wilcox.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c signrank.c -o signrank.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -c std_unif.c -o std_unif.lo gcc -std=gnu99 -shared -fopenmp -o libRmath.so -Wl,-soname,libRmath.so.1 mlutils.lo d1mach.lo i1mach.lo fmax2.lo fmin2.lo fprec.lo fround.lo ftrunc.lo sign.lo fsign.lo imax2.lo imin2.lo chebyshev.lo log1p.lo expm1.lo lgammacor.lo gammalims.lo stirlerr.lo bd0.lo gamma.lo lgamma.lo gamma_cody.lo beta.lo lbeta.lo polygamma.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_y.lo choose.lo snorm.lo sexp.lo dgamma.lo pgamma.lo qgamma.lo rgamma.lo dbeta.lo pbeta.lo qbeta.lo rbeta.lo dunif.lo punif.lo qunif.lo runif.lo dnorm.lo pnorm.lo qnorm.lo rnorm.lo dlnorm.lo plnorm.lo qlnorm.lo rlnorm.lo df.lo pf.lo qf.lo rf.lo dnf.lo dt.lo pt.lo qt.lo rt.lo dnt.lo dchisq.lo pchisq.lo qchisq.lo rchisq.lo rnchisq.lo dbinom.lo pbinom.lo qbinom.lo rbinom.lo rmultinom.lo dcauchy.lo pcauchy.lo qcauchy.lo rcauchy.lo dexp.lo pexp.lo qexp.lo rexp.lo dgeom.lo pgeom.lo qgeom.lo rgeom.lo dhyper.lo phyper.lo qhyper.lo rhyper.lo dnbinom.lo pnbinom.lo qnbinom.lo rnbinom.lo dpois.lo ppois.lo qpois.lo rpois.lo dweibull.lo pweibull.lo qweibull.lo rweibull.lo dlogis.lo plogis.lo qlogis.lo rlogis.lo dnchisq.lo pnchisq.lo qnchisq.lo dnbeta.lo pnbeta.lo qnbeta.lo pnf.lo pnt.lo qnf.lo qnt.lo ptukey.lo qtukey.lo toms708.lo wilcox.lo signrank.lo std_unif.lo -lm make[2]: Leaving directory `/build/buildd/r-base-3.0.2/src/nmath/standalone' make[2]: Entering directory `/build/buildd/r-base-3.0.2/src/nmath/standalone' gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c mlutils.c -o mlutils.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c d1mach.c -o d1mach.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c i1mach.c -o i1mach.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c fmax2.c -o fmax2.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c fmin2.c -o fmin2.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c fprec.c -o fprec.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c fround.c -o fround.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c ftrunc.c -o ftrunc.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c sign.c -o sign.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c fsign.c -o fsign.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c imax2.c -o imax2.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c imin2.c -o imin2.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c chebyshev.c -o chebyshev.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c log1p.c -o log1p.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c expm1.c -o expm1.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c lgammacor.c -o lgammacor.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c gammalims.c -o gammalims.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c stirlerr.c -o stirlerr.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c bd0.c -o bd0.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c gamma.c -o gamma.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c lgamma.c -o lgamma.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c gamma_cody.c -o gamma_cody.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c beta.c -o beta.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c lbeta.c -o lbeta.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c polygamma.c -o polygamma.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c bessel_i.c -o bessel_i.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c bessel_j.c -o bessel_j.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c bessel_k.c -o bessel_k.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c bessel_y.c -o bessel_y.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c choose.c -o choose.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c snorm.c -o snorm.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c sexp.c -o sexp.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c dgamma.c -o dgamma.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c pgamma.c -o pgamma.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c qgamma.c -o qgamma.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c rgamma.c -o rgamma.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c dbeta.c -o dbeta.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c pbeta.c -o pbeta.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c qbeta.c -o qbeta.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c rbeta.c -o rbeta.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c dunif.c -o dunif.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c punif.c -o punif.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c qunif.c -o qunif.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c runif.c -o runif.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c dnorm.c -o dnorm.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c pnorm.c -o pnorm.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c qnorm.c -o qnorm.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c rnorm.c -o rnorm.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c dlnorm.c -o dlnorm.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c plnorm.c -o plnorm.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c qlnorm.c -o qlnorm.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c rlnorm.c -o rlnorm.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c df.c -o df.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c pf.c -o pf.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c qf.c -o qf.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c rf.c -o rf.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c dnf.c -o dnf.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c dt.c -o dt.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c pt.c -o pt.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c qt.c -o qt.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c rt.c -o rt.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c dnt.c -o dnt.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c dchisq.c -o dchisq.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c pchisq.c -o pchisq.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c qchisq.c -o qchisq.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c rchisq.c -o rchisq.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c rnchisq.c -o rnchisq.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c dbinom.c -o dbinom.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c pbinom.c -o pbinom.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c qbinom.c -o qbinom.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c rbinom.c -o rbinom.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c rmultinom.c -o rmultinom.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c dcauchy.c -o dcauchy.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c pcauchy.c -o pcauchy.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c qcauchy.c -o qcauchy.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c rcauchy.c -o rcauchy.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c dexp.c -o dexp.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c pexp.c -o pexp.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c qexp.c -o qexp.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c rexp.c -o rexp.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c dgeom.c -o dgeom.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c pgeom.c -o pgeom.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c qgeom.c -o qgeom.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c rgeom.c -o rgeom.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c dhyper.c -o dhyper.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c phyper.c -o phyper.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c qhyper.c -o qhyper.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c rhyper.c -o rhyper.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c dnbinom.c -o dnbinom.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c pnbinom.c -o pnbinom.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c qnbinom.c -o qnbinom.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c rnbinom.c -o rnbinom.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c dpois.c -o dpois.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c ppois.c -o ppois.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c qpois.c -o qpois.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c rpois.c -o rpois.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c dweibull.c -o dweibull.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c pweibull.c -o pweibull.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c qweibull.c -o qweibull.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c rweibull.c -o rweibull.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c dlogis.c -o dlogis.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c plogis.c -o plogis.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c qlogis.c -o qlogis.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c rlogis.c -o rlogis.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c dnchisq.c -o dnchisq.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c pnchisq.c -o pnchisq.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c qnchisq.c -o qnchisq.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c dnbeta.c -o dnbeta.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c pnbeta.c -o pnbeta.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c qnbeta.c -o qnbeta.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c pnf.c -o pnf.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c pnt.c -o pnt.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c qnf.c -o qnf.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c qnt.c -o qnt.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c ptukey.c -o ptukey.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c qtukey.c -o qtukey.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c toms708.c -o toms708.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c wilcox.c -o wilcox.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c signrank.c -o signrank.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O3 -pipe -g -D_REENTRANT -c std_unif.c -o std_unif.o ar cr libRmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o std_unif.o ranlib libRmath.a make[2]: Leaving directory `/build/buildd/r-base-3.0.2/src/nmath/standalone' make[1]: Leaving directory `/build/buildd/r-base-3.0.2/src/nmath/standalone' /usr/bin/make docs R_CMD_BUILD_HELP_OPTS="--txt --example" make[1]: Entering directory `/build/buildd/r-base-3.0.2' make[2]: Entering directory `/build/buildd/r-base-3.0.2/m4' make[2]: Nothing to be done for `R'. make[2]: Leaving directory `/build/buildd/r-base-3.0.2/m4' make[2]: Entering directory `/build/buildd/r-base-3.0.2/tools' make[2]: Nothing to be done for `R'. make[2]: Leaving directory `/build/buildd/r-base-3.0.2/tools' make[2]: Entering directory `/build/buildd/r-base-3.0.2/doc' make[3]: Entering directory `/build/buildd/r-base-3.0.2/doc/html' make[3]: Leaving directory `/build/buildd/r-base-3.0.2/doc/html' make[3]: Entering directory `/build/buildd/r-base-3.0.2/doc/manual' make[3]: Nothing to be done for `R'. make[3]: Leaving directory `/build/buildd/r-base-3.0.2/doc/manual' make[2]: Leaving directory `/build/buildd/r-base-3.0.2/doc' make[2]: Entering directory `/build/buildd/r-base-3.0.2/etc' make[2]: Leaving directory `/build/buildd/r-base-3.0.2/etc' make[2]: Entering directory `/build/buildd/r-base-3.0.2/share' make[2]: Leaving directory `/build/buildd/r-base-3.0.2/share' make[2]: Entering directory `/build/buildd/r-base-3.0.2/src' make[3]: Entering directory `/build/buildd/r-base-3.0.2/src/scripts' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/scripts' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/scripts' make[3]: Leaving directory `/build/buildd/r-base-3.0.2/src/scripts' make[3]: Entering directory `/build/buildd/r-base-3.0.2/src/include' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/include/R_ext' make[4]: Nothing to be done for `R'. make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/include/R_ext' make[3]: Leaving directory `/build/buildd/r-base-3.0.2/src/include' make[3]: Entering directory `/build/buildd/r-base-3.0.2/src/extra' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/extra/tre' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/extra/tre' make[5]: `Makedeps' is up to date. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/extra/tre' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/extra/tre' make[5]: `libtre.a' is up to date. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/extra/tre' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/extra/tre' make[3]: Leaving directory `/build/buildd/r-base-3.0.2/src/extra' make[3]: Entering directory `/build/buildd/r-base-3.0.2/src/appl' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/appl' make[4]: `Makedeps' is up to date. make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/appl' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/appl' make[4]: `libappl.a' is up to date. make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/appl' make[3]: Leaving directory `/build/buildd/r-base-3.0.2/src/appl' make[3]: Entering directory `/build/buildd/r-base-3.0.2/src/nmath' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/nmath' make[4]: `Makedeps' is up to date. make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/nmath' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/nmath' make[4]: `libnmath.a' is up to date. make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/nmath' make[3]: Leaving directory `/build/buildd/r-base-3.0.2/src/nmath' make[3]: Entering directory `/build/buildd/r-base-3.0.2/src/unix' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/unix' make[4]: `Makedeps' is up to date. make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/unix' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/unix' make[4]: `libunix.a' is up to date. make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/unix' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/unix' gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -DR_HOME='"/build/buildd/r-base-3.0.2"' -o Rscript \ ./Rscript.c make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/unix' make[3]: Leaving directory `/build/buildd/r-base-3.0.2/src/unix' make[3]: Entering directory `/build/buildd/r-base-3.0.2/src/main' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/main' make[4]: `Makedeps' is up to date. make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/main' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/main' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/main' /build/buildd/r-base-3.0.2/lib/libR.so is unchanged make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/main' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/main' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/main' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/main' /build/buildd/r-base-3.0.2/bin/exec/R is unchanged make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/main' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/main' make[3]: Leaving directory `/build/buildd/r-base-3.0.2/src/main' make[3]: Entering directory `/build/buildd/r-base-3.0.2/src/modules' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/internet' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/internet' make[5]: `Makedeps' is up to date. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/internet' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/internet' make[5]: `internet.so' is up to date. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/internet' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/internet' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/lapack' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/lapack' make[5]: `Makedeps' is up to date. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/lapack' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/lapack' make[5]: `lapack.so' is up to date. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/lapack' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/lapack' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/vfonts' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/vfonts' make[5]: `Makedeps' is up to date. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/vfonts' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/vfonts' make[5]: `vfonts.so' is up to date. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/vfonts' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/vfonts' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/X11' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/X11' make[5]: `Makedeps' is up to date. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/X11' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/X11' make[5]: `R_X11.so' is up to date. make[5]: `R_de.so' is up to date. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/X11' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/X11' /build/buildd/r-base-3.0.2/modules/R_X11.so is unchanged /build/buildd/r-base-3.0.2/modules/R_de.so is unchanged make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/X11' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/X11' make[3]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules' make[3]: Entering directory `/build/buildd/r-base-3.0.2/src/library' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/profile' building system startup profile make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/profile' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/translations' building package 'translations' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/translations' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/translations' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/translations' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/base' building package 'base' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/base' all.R is unchanged make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/base' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/base' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/tools' building package 'tools' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/tools' all.R is unchanged make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/tools' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/tools' make[6]: Entering directory `/build/buildd/r-base-3.0.2/src/library/tools/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/tools/src' make[7]: `Makedeps' is up to date. make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/tools/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/tools/src' ../../../../library/tools/libs/tools.so is unchanged make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/tools/src' make[6]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/tools/src' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/tools' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/tools' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/compiler' building package 'compiler' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/compiler' all.R is unchanged make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/compiler' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/compiler' make[5]: Nothing to be done for `mklazycomp'. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/compiler' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/compiler' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/base' make[4]: Nothing to be done for `mklazycomp'. make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/base' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/tools' make[4]: Nothing to be done for `mklazycomp'. make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/tools' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/utils' building package 'utils' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/utils' all.R is unchanged make[5]: Nothing to be done for `iconvlist'. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/utils' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/utils' make[6]: Entering directory `/build/buildd/r-base-3.0.2/src/library/utils/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/utils/src' make[7]: `Makedeps' is up to date. make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/utils/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/utils/src' ../../../../library/utils/libs/utils.so is unchanged make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/utils/src' make[6]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/utils/src' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/utils' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/utils' make[5]: Nothing to be done for `mklazycomp'. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/utils' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/utils' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grDevices' building package 'grDevices' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grDevices' all.R is unchanged make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grDevices' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grDevices' make[6]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src' make[7]: `Makedeps' is up to date. make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src' ../../../../library/grDevices/libs/grDevices.so is unchanged make[8]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src/cairo' make[9]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src/cairo' make[9]: `Makedeps' is up to date. make[9]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src/cairo' make[9]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src/cairo' make[10]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src/cairo' make[10]: `cairo.so' is up to date. make[10]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src/cairo' make[9]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src/cairo' make[8]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src/cairo' make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src' make[6]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grDevices' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grDevices' make[5]: Nothing to be done for `mklazycomp'. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grDevices' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grDevices' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/graphics' building package 'graphics' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/graphics' all.R is unchanged make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/graphics' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/graphics' make[6]: Entering directory `/build/buildd/r-base-3.0.2/src/library/graphics/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/graphics/src' make[7]: `Makedeps' is up to date. make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/graphics/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/graphics/src' ../../../../library/graphics/libs/graphics.so is unchanged make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/graphics/src' make[6]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/graphics/src' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/graphics' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/graphics' make[5]: Nothing to be done for `mklazycomp'. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/graphics' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/graphics' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/stats' building package 'stats' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/stats' all.R is unchanged make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/stats' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/stats' make[6]: Entering directory `/build/buildd/r-base-3.0.2/src/library/stats/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/stats/src' make[7]: `Makedeps' is up to date. make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/stats/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/stats/src' ../../../../library/stats/libs/stats.so is unchanged make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/stats/src' make[6]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/stats/src' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/stats' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/stats' make[5]: Nothing to be done for `mklazycomp'. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/stats' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/stats' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/datasets' building package 'datasets' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/datasets' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/datasets' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/datasets' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/methods' building package 'methods' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/methods' all.R is unchanged make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/methods' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/methods' make[6]: Entering directory `/build/buildd/r-base-3.0.2/src/library/methods/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/methods/src' make[7]: `Makedeps' is up to date. make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/methods/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/methods/src' ../../../../library/methods/libs/methods.so is unchanged make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/methods/src' make[6]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/methods/src' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/methods' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/methods' make[5]: Nothing to be done for `RfilesLazy'. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/methods' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/methods' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grid' building package 'grid' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grid' all.R is unchanged make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grid' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grid' make[6]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grid/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grid/src' make[7]: `Makedeps' is up to date. make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grid/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grid/src' ../../../../library/grid/libs/grid.so is unchanged make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grid/src' make[6]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grid/src' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grid' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grid' make[5]: Nothing to be done for `mklazycomp'. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grid' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grid' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/splines' building package 'splines' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/splines' all.R is unchanged make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/splines' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/splines' make[6]: Entering directory `/build/buildd/r-base-3.0.2/src/library/splines/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/splines/src' make[7]: `Makedeps' is up to date. make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/splines/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/splines/src' ../../../../library/splines/libs/splines.so is unchanged make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/splines/src' make[6]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/splines/src' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/splines' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/splines' make[5]: Nothing to be done for `mklazycomp'. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/splines' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/splines' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/stats4' building package 'stats4' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/stats4' all.R is unchanged make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/stats4' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/stats4' make[5]: Nothing to be done for `mklazycomp'. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/stats4' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/stats4' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/tcltk' building package 'tcltk' all.R is unchanged make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/tcltk' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/tcltk' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/tcltk/src' make[6]: Entering directory `/build/buildd/r-base-3.0.2/src/library/tcltk/src' make[6]: `Makedeps' is up to date. make[6]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/tcltk/src' make[6]: Entering directory `/build/buildd/r-base-3.0.2/src/library/tcltk/src' ../../../../library/tcltk/libs/tcltk.so is unchanged make[6]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/tcltk/src' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/tcltk/src' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/tcltk' make[5]: Nothing to be done for `mklazycomp'. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/tcltk' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/tcltk' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/parallel' building package 'parallel' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/parallel' all.R is unchanged make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/parallel' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/parallel' make[6]: Entering directory `/build/buildd/r-base-3.0.2/src/library/parallel/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/parallel/src' make[7]: `Makedeps' is up to date. make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/parallel/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/parallel/src' ../../../../library/parallel/libs/parallel.so is unchanged make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/parallel/src' make[6]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/parallel/src' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/parallel' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/parallel' make[5]: Nothing to be done for `mklazycomp'. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/parallel' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/parallel' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/base' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/base' installing parsed NAMESPACE files make[3]: Leaving directory `/build/buildd/r-base-3.0.2/src/library' make[2]: Leaving directory `/build/buildd/r-base-3.0.2/src' make[2]: Entering directory `/build/buildd/r-base-3.0.2/tests' make[2]: Nothing to be done for `R'. make[2]: Leaving directory `/build/buildd/r-base-3.0.2/tests' you should 'make docs' now ... make[2]: Entering directory `/build/buildd/r-base-3.0.2/doc' creating NEWS creating NEWS.pdf make[3]: Entering directory `/build/buildd/r-base-3.0.2/doc/manual' creating doc/manual/R-FAQ.html creating doc/manual/version.texi creating doc/manual/R-admin.html creating doc/manual/R-data.html creating doc/manual/R-exts.html creating doc/manual/R-intro.html creating doc/manual/R-ints.html creating doc/manual/R-lang.html make[4]: Entering directory `/build/buildd/r-base-3.0.2/doc/html' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/doc/html' make[3]: Leaving directory `/build/buildd/r-base-3.0.2/doc/manual' make[2]: Leaving directory `/build/buildd/r-base-3.0.2/doc' make[2]: Entering directory `/build/buildd/r-base-3.0.2/src/library' make[3]: Entering directory `/build/buildd/r-base-3.0.2/src/library' installing parsed Rd make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library' base stats utils methods graphics grDevices datasets grid tools tcltk splines stats4 compiler parallel make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library' make[3]: Leaving directory `/build/buildd/r-base-3.0.2/src/library' make[3]: Entering directory `/build/buildd/r-base-3.0.2/src/library' building/updating package metadata ... make[3]: Leaving directory `/build/buildd/r-base-3.0.2/src/library' make[3]: Entering directory `/build/buildd/r-base-3.0.2/src/library' writing package indices make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library' make[3]: Leaving directory `/build/buildd/r-base-3.0.2/src/library' make[2]: Leaving directory `/build/buildd/r-base-3.0.2/src/library' make[1]: Leaving directory `/build/buildd/r-base-3.0.2' /usr/bin/make javaconf make[1]: Entering directory `/build/buildd/r-base-3.0.2' make[2]: Entering directory `/build/buildd/r-base-3.0.2/m4' make[2]: Nothing to be done for `R'. make[2]: Leaving directory `/build/buildd/r-base-3.0.2/m4' make[2]: Entering directory `/build/buildd/r-base-3.0.2/tools' make[2]: Nothing to be done for `R'. make[2]: Leaving directory `/build/buildd/r-base-3.0.2/tools' make[2]: Entering directory `/build/buildd/r-base-3.0.2/doc' make[3]: Entering directory `/build/buildd/r-base-3.0.2/doc/html' make[3]: Leaving directory `/build/buildd/r-base-3.0.2/doc/html' make[3]: Entering directory `/build/buildd/r-base-3.0.2/doc/manual' make[3]: Nothing to be done for `R'. make[3]: Leaving directory `/build/buildd/r-base-3.0.2/doc/manual' make[2]: Leaving directory `/build/buildd/r-base-3.0.2/doc' make[2]: Entering directory `/build/buildd/r-base-3.0.2/etc' make[2]: Leaving directory `/build/buildd/r-base-3.0.2/etc' make[2]: Entering directory `/build/buildd/r-base-3.0.2/share' make[2]: Leaving directory `/build/buildd/r-base-3.0.2/share' make[2]: Entering directory `/build/buildd/r-base-3.0.2/src' make[3]: Entering directory `/build/buildd/r-base-3.0.2/src/scripts' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/scripts' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/scripts' make[3]: Leaving directory `/build/buildd/r-base-3.0.2/src/scripts' make[3]: Entering directory `/build/buildd/r-base-3.0.2/src/include' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/include/R_ext' make[4]: Nothing to be done for `R'. make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/include/R_ext' make[3]: Leaving directory `/build/buildd/r-base-3.0.2/src/include' make[3]: Entering directory `/build/buildd/r-base-3.0.2/src/extra' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/extra/tre' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/extra/tre' make[5]: `Makedeps' is up to date. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/extra/tre' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/extra/tre' make[5]: `libtre.a' is up to date. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/extra/tre' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/extra/tre' make[3]: Leaving directory `/build/buildd/r-base-3.0.2/src/extra' make[3]: Entering directory `/build/buildd/r-base-3.0.2/src/appl' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/appl' make[4]: `Makedeps' is up to date. make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/appl' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/appl' make[4]: `libappl.a' is up to date. make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/appl' make[3]: Leaving directory `/build/buildd/r-base-3.0.2/src/appl' make[3]: Entering directory `/build/buildd/r-base-3.0.2/src/nmath' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/nmath' make[4]: `Makedeps' is up to date. make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/nmath' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/nmath' make[4]: `libnmath.a' is up to date. make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/nmath' make[3]: Leaving directory `/build/buildd/r-base-3.0.2/src/nmath' make[3]: Entering directory `/build/buildd/r-base-3.0.2/src/unix' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/unix' make[4]: `Makedeps' is up to date. make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/unix' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/unix' make[4]: `libunix.a' is up to date. make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/unix' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/unix' gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -DR_HOME='"/build/buildd/r-base-3.0.2"' -o Rscript \ ./Rscript.c make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/unix' make[3]: Leaving directory `/build/buildd/r-base-3.0.2/src/unix' make[3]: Entering directory `/build/buildd/r-base-3.0.2/src/main' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/main' make[4]: `Makedeps' is up to date. make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/main' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/main' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/main' /build/buildd/r-base-3.0.2/lib/libR.so is unchanged make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/main' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/main' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/main' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/main' /build/buildd/r-base-3.0.2/bin/exec/R is unchanged make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/main' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/main' make[3]: Leaving directory `/build/buildd/r-base-3.0.2/src/main' make[3]: Entering directory `/build/buildd/r-base-3.0.2/src/modules' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/internet' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/internet' make[5]: `Makedeps' is up to date. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/internet' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/internet' make[5]: `internet.so' is up to date. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/internet' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/internet' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/lapack' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/lapack' make[5]: `Makedeps' is up to date. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/lapack' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/lapack' make[5]: `lapack.so' is up to date. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/lapack' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/lapack' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/vfonts' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/vfonts' make[5]: `Makedeps' is up to date. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/vfonts' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/vfonts' make[5]: `vfonts.so' is up to date. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/vfonts' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/vfonts' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/X11' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/X11' make[5]: `Makedeps' is up to date. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/X11' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/X11' make[5]: `R_X11.so' is up to date. make[5]: `R_de.so' is up to date. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/X11' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/X11' /build/buildd/r-base-3.0.2/modules/R_X11.so is unchanged /build/buildd/r-base-3.0.2/modules/R_de.so is unchanged make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/X11' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/X11' make[3]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules' make[3]: Entering directory `/build/buildd/r-base-3.0.2/src/library' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/profile' building system startup profile make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/profile' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/translations' building package 'translations' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/translations' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/translations' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/translations' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/base' building package 'base' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/base' all.R is unchanged make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/base' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/base' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/tools' building package 'tools' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/tools' all.R is unchanged make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/tools' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/tools' make[6]: Entering directory `/build/buildd/r-base-3.0.2/src/library/tools/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/tools/src' make[7]: `Makedeps' is up to date. make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/tools/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/tools/src' ../../../../library/tools/libs/tools.so is unchanged make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/tools/src' make[6]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/tools/src' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/tools' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/tools' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/compiler' building package 'compiler' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/compiler' all.R is unchanged make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/compiler' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/compiler' make[5]: Nothing to be done for `mklazycomp'. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/compiler' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/compiler' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/base' make[4]: Nothing to be done for `mklazycomp'. make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/base' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/tools' make[4]: Nothing to be done for `mklazycomp'. make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/tools' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/utils' building package 'utils' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/utils' all.R is unchanged make[5]: Nothing to be done for `iconvlist'. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/utils' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/utils' make[6]: Entering directory `/build/buildd/r-base-3.0.2/src/library/utils/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/utils/src' make[7]: `Makedeps' is up to date. make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/utils/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/utils/src' ../../../../library/utils/libs/utils.so is unchanged make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/utils/src' make[6]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/utils/src' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/utils' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/utils' make[5]: Nothing to be done for `mklazycomp'. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/utils' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/utils' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grDevices' building package 'grDevices' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grDevices' all.R is unchanged make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grDevices' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grDevices' make[6]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src' make[7]: `Makedeps' is up to date. make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src' ../../../../library/grDevices/libs/grDevices.so is unchanged make[8]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src/cairo' make[9]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src/cairo' make[9]: `Makedeps' is up to date. make[9]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src/cairo' make[9]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src/cairo' make[10]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src/cairo' make[10]: `cairo.so' is up to date. make[10]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src/cairo' make[9]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src/cairo' make[8]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src/cairo' make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src' make[6]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grDevices/src' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grDevices' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grDevices' make[5]: Nothing to be done for `mklazycomp'. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grDevices' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grDevices' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/graphics' building package 'graphics' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/graphics' all.R is unchanged make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/graphics' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/graphics' make[6]: Entering directory `/build/buildd/r-base-3.0.2/src/library/graphics/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/graphics/src' make[7]: `Makedeps' is up to date. make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/graphics/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/graphics/src' ../../../../library/graphics/libs/graphics.so is unchanged make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/graphics/src' make[6]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/graphics/src' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/graphics' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/graphics' make[5]: Nothing to be done for `mklazycomp'. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/graphics' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/graphics' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/stats' building package 'stats' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/stats' all.R is unchanged make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/stats' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/stats' make[6]: Entering directory `/build/buildd/r-base-3.0.2/src/library/stats/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/stats/src' make[7]: `Makedeps' is up to date. make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/stats/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/stats/src' ../../../../library/stats/libs/stats.so is unchanged make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/stats/src' make[6]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/stats/src' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/stats' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/stats' make[5]: Nothing to be done for `mklazycomp'. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/stats' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/stats' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/datasets' building package 'datasets' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/datasets' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/datasets' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/datasets' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/methods' building package 'methods' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/methods' all.R is unchanged make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/methods' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/methods' make[6]: Entering directory `/build/buildd/r-base-3.0.2/src/library/methods/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/methods/src' make[7]: `Makedeps' is up to date. make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/methods/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/methods/src' ../../../../library/methods/libs/methods.so is unchanged make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/methods/src' make[6]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/methods/src' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/methods' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/methods' make[5]: Nothing to be done for `RfilesLazy'. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/methods' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/methods' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grid' building package 'grid' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grid' all.R is unchanged make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grid' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grid' make[6]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grid/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grid/src' make[7]: `Makedeps' is up to date. make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grid/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grid/src' ../../../../library/grid/libs/grid.so is unchanged make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grid/src' make[6]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grid/src' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grid' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/grid' make[5]: Nothing to be done for `mklazycomp'. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grid' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/grid' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/splines' building package 'splines' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/splines' all.R is unchanged make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/splines' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/splines' make[6]: Entering directory `/build/buildd/r-base-3.0.2/src/library/splines/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/splines/src' make[7]: `Makedeps' is up to date. make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/splines/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/splines/src' ../../../../library/splines/libs/splines.so is unchanged make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/splines/src' make[6]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/splines/src' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/splines' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/splines' make[5]: Nothing to be done for `mklazycomp'. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/splines' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/splines' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/stats4' building package 'stats4' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/stats4' all.R is unchanged make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/stats4' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/stats4' make[5]: Nothing to be done for `mklazycomp'. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/stats4' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/stats4' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/tcltk' building package 'tcltk' all.R is unchanged make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/tcltk' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/tcltk' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/tcltk/src' make[6]: Entering directory `/build/buildd/r-base-3.0.2/src/library/tcltk/src' make[6]: `Makedeps' is up to date. make[6]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/tcltk/src' make[6]: Entering directory `/build/buildd/r-base-3.0.2/src/library/tcltk/src' ../../../../library/tcltk/libs/tcltk.so is unchanged make[6]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/tcltk/src' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/tcltk/src' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/tcltk' make[5]: Nothing to be done for `mklazycomp'. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/tcltk' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/tcltk' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/parallel' building package 'parallel' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/parallel' all.R is unchanged make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/parallel' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/parallel' make[6]: Entering directory `/build/buildd/r-base-3.0.2/src/library/parallel/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/parallel/src' make[7]: `Makedeps' is up to date. make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/parallel/src' make[7]: Entering directory `/build/buildd/r-base-3.0.2/src/library/parallel/src' ../../../../library/parallel/libs/parallel.so is unchanged make[7]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/parallel/src' make[6]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/parallel/src' make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/parallel' make[5]: Entering directory `/build/buildd/r-base-3.0.2/src/library/parallel' make[5]: Nothing to be done for `mklazycomp'. make[5]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/parallel' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/parallel' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/library/base' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/library/base' installing parsed NAMESPACE files make[3]: Leaving directory `/build/buildd/r-base-3.0.2/src/library' make[2]: Leaving directory `/build/buildd/r-base-3.0.2/src' make[2]: Entering directory `/build/buildd/r-base-3.0.2/tests' make[2]: Nothing to be done for `R'. make[2]: Leaving directory `/build/buildd/r-base-3.0.2/tests' make[2]: Entering directory `/build/buildd/r-base-3.0.2' configuring Java ... Java interpreter : /usr/bin/java Java version : 1.7.0_25 Java home path : /usr/lib/jvm/java-7-openjdk-powerpc/jre Java compiler : /usr/bin/javac Java headers gen.: /usr/bin/javah Java archive tool: /usr/bin/jar trying to compile and link a JNI progam detected JNI cpp flags : -I$(JAVA_HOME)/../include detected JNI linker flags : -L$(JAVA_HOME)/lib/ppc/server -ljvm make[3]: Entering directory `/tmp/Rjavareconf.7kEgNS' gcc -std=gnu99 -I/build/buildd/r-base-3.0.2/include -DNDEBUG -I/usr/lib/jvm/java-7-openjdk-powerpc/jre/../include -fpic -O3 -pipe -g -c conftest.c -o conftest.o gcc -std=gnu99 -shared -o conftest.so conftest.o -L/usr/lib/jvm/java-7-openjdk-powerpc/jre/lib/ppc/server -ljvm -L/build/buildd/r-base-3.0.2/lib -lR make[3]: Leaving directory `/tmp/Rjavareconf.7kEgNS' JAVA_HOME : /usr/lib/jvm/java-7-openjdk-powerpc/jre Java library path: $(JAVA_HOME)/lib/ppc/server JNI cpp flags : -I$(JAVA_HOME)/../include JNI linker flags : -L$(JAVA_HOME)/lib/ppc/server -ljvm Updating Java configuration in /build/buildd/r-base-3.0.2 Done. make[2]: Leaving directory `/build/buildd/r-base-3.0.2' make[1]: Leaving directory `/build/buildd/r-base-3.0.2' touch make-arch-stamp *** check *** xvfb-run make check-all make[1]: Entering directory `/build/buildd/r-base-3.0.2' make[2]: Entering directory `/build/buildd/r-base-3.0.2/tests' make[3]: Entering directory `/build/buildd/r-base-3.0.2/tests' make[4]: Entering directory `/build/buildd/r-base-3.0.2/tests/Examples' Testing examples for package 'base' Testing examples for package 'tools' comparing 'tools-Ex.Rout' to 'tools-Ex.Rout.save' ... files differ in number of lines: 435c435 < character(0) --- > [1] "Matrix" "nlme" "mgcv" 816a817,833 > $Depends > [1] "lattice" > > $Installed > [1] "lattice" > > $Found > list() > > $NotFound > character(0) > > $R > [1] "R (>= 2.15.1)" > > attr(,"class") > [1] "DependsList" "list" Testing examples for package 'utils' Testing examples for package 'grDevices' comparing 'grDevices-Ex.Rout' to 'grDevices-Ex.Rout.save' ... OK Testing examples for package 'graphics' comparing 'graphics-Ex.Rout' to 'graphics-Ex.Rout.save' ... OK Testing examples for package 'stats' comparing 'stats-Ex.Rout' to 'stats-Ex.Rout.save' ... files differ in number of lines: 16021,16022d16020 < Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : < there is no package called 'MASS' 16027a16026,16028 > > detaching 'package:MASS' > Testing examples for package 'datasets' comparing 'datasets-Ex.Rout' to 'datasets-Ex.Rout.save' ... OK Testing examples for package 'methods' Testing examples for package 'grid' comparing 'grid-Ex.Rout' to 'grid-Ex.Rout.save' ... OK Testing examples for package 'splines' comparing 'splines-Ex.Rout' to 'splines-Ex.Rout.save' ... OK Testing examples for package 'stats4' comparing 'stats4-Ex.Rout' to 'stats4-Ex.Rout.save' ... OK Testing examples for package 'tcltk' Testing examples for package 'compiler' Testing examples for package 'parallel' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/tests/Examples' make[3]: Leaving directory `/build/buildd/r-base-3.0.2/tests' make[3]: Entering directory `/build/buildd/r-base-3.0.2/tests' running strict specific tests make[4]: Entering directory `/build/buildd/r-base-3.0.2/tests' running code in 'eval-etc.R' ... OK comparing 'eval-etc.Rout' to './eval-etc.Rout.save' ... OK running code in 'simple-true.R' ... OK comparing 'simple-true.Rout' to './simple-true.Rout.save' ... OK running code in 'arith-true.R' ... OK comparing 'arith-true.Rout' to './arith-true.Rout.save' ... OK running code in 'arith.R' ... OK comparing 'arith.Rout' to './arith.Rout.save' ... OK running code in 'lm-tests.R' ... OK comparing 'lm-tests.Rout' to './lm-tests.Rout.save' ... OK running code in 'ok-errors.R' ... OK comparing 'ok-errors.Rout' to './ok-errors.Rout.save' ... OK running code in 'method-dispatch.R' ... OK comparing 'method-dispatch.Rout' to './method-dispatch.Rout.save' ... OK running code in 'array-subset.R' ... OK comparing 'array-subset.Rout' to './array-subset.Rout.save' ... OK running code in 'any-all.R' ... OK comparing 'any-all.Rout' to './any-all.Rout.save' ... OK running code in 'd-p-q-r-tests.R' ... OK comparing 'd-p-q-r-tests.Rout' to './d-p-q-r-tests.Rout.save' ... OK make[4]: Leaving directory `/build/buildd/r-base-3.0.2/tests' running sloppy specific tests make[4]: Entering directory `/build/buildd/r-base-3.0.2/tests' running code in 'complex.R' ... OK comparing 'complex.Rout' to './complex.Rout.save' ... OK running code in 'print-tests.R' ... OK comparing 'print-tests.Rout' to './print-tests.Rout.save' ... OK running code in 'lapack.R' ... OK comparing 'lapack.Rout' to './lapack.Rout.save' ... OK running code in 'datasets.R' ... OK comparing 'datasets.Rout' to './datasets.Rout.save' ... OK running code in 'iec60559.R' ... OK comparing 'iec60559.Rout' to './iec60559.Rout.save' ... OK make[4]: Leaving directory `/build/buildd/r-base-3.0.2/tests' make[3]: Leaving directory `/build/buildd/r-base-3.0.2/tests' make[3]: Entering directory `/build/buildd/r-base-3.0.2/tests' running regression tests ... make[4]: Entering directory `/build/buildd/r-base-3.0.2/tests' running code in 'reg-tests-1a.R' ... OK running code in 'reg-tests-1b.R' ... OK running code in 'reg-tests-1c.R' ... OK running code in 'reg-tests-2.R' ... OK comparing 'reg-tests-2.Rout' to './reg-tests-2.Rout.save' ... OK running code in 'reg-examples1.R' ... OK running code in 'reg-examples2.R' ... OK running code in 'reg-packages.R' ... OK running code in 'reg-IO.R' ... OK comparing 'reg-IO.Rout' to './reg-IO.Rout.save' ... OK running code in 'reg-IO2.R' ... OK comparing 'reg-IO2.Rout' to './reg-IO2.Rout.save' ... OK running code in 'reg-plot.R' ... OK comparing 'reg-plot.pdf' to './reg-plot.pdf.save' ... OK running code in 'reg-S4.R' ... OK comparing 'reg-S4.Rout' to './reg-S4.Rout.save' ... OK running code in 'reg-BLAS.R' ...make[4]: *** [reg-BLAS.Rout] Error 1 make[4]: Leaving directory `/build/buildd/r-base-3.0.2/tests' make[3]: *** [test-Reg] Error 2 make[3]: Leaving directory `/build/buildd/r-base-3.0.2/tests' make[2]: *** [test-all-basics] Error 1 make[2]: Leaving directory `/build/buildd/r-base-3.0.2/tests' make[1]: *** [check-all] Error 2 make[1]: Leaving directory `/build/buildd/r-base-3.0.2' make: [check-stamp] Error 2 (ignored) touch check-stamp /usr/bin/fakeroot debian/rules binary-arch *** install-arch *** dh_testdir dh_testroot dh_prep -a dh_installdirs -A /build/buildd/r-base-3.0.2/debian/r-base-core /usr/bin/make DESTDIR=/build/buildd/r-base-3.0.2/debian/r-base-core install make[1]: Entering directory `/build/buildd/r-base-3.0.2' make[2]: Entering directory `/build/buildd/r-base-3.0.2/m4' make[2]: Nothing to be done for `install'. make[2]: Leaving directory `/build/buildd/r-base-3.0.2/m4' make[2]: Entering directory `/build/buildd/r-base-3.0.2/tools' make[2]: Nothing to be done for `install'. make[2]: Leaving directory `/build/buildd/r-base-3.0.2/tools' make[2]: Entering directory `/build/buildd/r-base-3.0.2/doc' installing doc ... mkdir -p -- /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/R/doc mkdir -p -- /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/man/man1 make[3]: Entering directory `/build/buildd/r-base-3.0.2/doc/html' installing doc/html ... mkdir -p -- /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/R/doc/html make[3]: Leaving directory `/build/buildd/r-base-3.0.2/doc/html' make[3]: Entering directory `/build/buildd/r-base-3.0.2/doc/manual' installing doc/manual ... mkdir -p -- /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/R/doc/manual make[3]: Leaving directory `/build/buildd/r-base-3.0.2/doc/manual' make[2]: Leaving directory `/build/buildd/r-base-3.0.2/doc' make[2]: Entering directory `/build/buildd/r-base-3.0.2/etc' mkdir -p -- /build/buildd/r-base-3.0.2/debian/r-base-core/usr/lib/R/etc installing etc ... make[2]: Leaving directory `/build/buildd/r-base-3.0.2/etc' make[2]: Entering directory `/build/buildd/r-base-3.0.2/share' installing share ... mkdir -p -- /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/R/share mkdir -p -- /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/R/share/R mkdir -p -- /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/R/share/dictionaries mkdir -p -- /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/R/share/encodings mkdir -p -- /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/R/share/java mkdir -p -- /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/R/share/licenses mkdir -p -- /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/R/share/make mkdir -p -- /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/R/share/sh mkdir -p -- /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/R/share/texmf mkdir -p -- /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/R/share/texmf/bibtex/bib mkdir -p -- /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/R/share/texmf/bibtex/bst mkdir -p -- /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/R/share/texmf/tex/latex make[2]: Leaving directory `/build/buildd/r-base-3.0.2/share' make[2]: Entering directory `/build/buildd/r-base-3.0.2/src' make[3]: Entering directory `/build/buildd/r-base-3.0.2/src/scripts' mkdir -p -- /build/buildd/r-base-3.0.2/debian/r-base-core/usr/lib/R/bin make[3]: Leaving directory `/build/buildd/r-base-3.0.2/src/scripts' make[3]: Entering directory `/build/buildd/r-base-3.0.2/src/include' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/include/R_ext' mkdir -p -- /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/R/include/R_ext make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/include/R_ext' make[3]: Leaving directory `/build/buildd/r-base-3.0.2/src/include' make[3]: Entering directory `/build/buildd/r-base-3.0.2/src/extra' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/extra/blas' make[4]: Nothing to be done for `install'. make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/extra/blas' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/extra/bzip2' make[4]: Nothing to be done for `install'. make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/extra/bzip2' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/extra/pcre' make[4]: Nothing to be done for `install'. make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/extra/pcre' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/extra/tre' make[4]: Nothing to be done for `install'. make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/extra/tre' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/extra/xdr' make[4]: Nothing to be done for `install'. make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/extra/xdr' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/extra/xz' make[4]: Nothing to be done for `install'. make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/extra/xz' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/extra/zlib' make[4]: Nothing to be done for `install'. make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/extra/zlib' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/extra/intl' make[4]: Nothing to be done for `install'. make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/extra/intl' make[3]: Leaving directory `/build/buildd/r-base-3.0.2/src/extra' make[3]: Entering directory `/build/buildd/r-base-3.0.2/src/appl' make[3]: Nothing to be done for `install'. make[3]: Leaving directory `/build/buildd/r-base-3.0.2/src/appl' make[3]: Entering directory `/build/buildd/r-base-3.0.2/src/nmath' make[3]: Nothing to be done for `install'. make[3]: Leaving directory `/build/buildd/r-base-3.0.2/src/nmath' make[3]: Entering directory `/build/buildd/r-base-3.0.2/src/unix' gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -DR_HOME='"/usr/lib/R"' -o Rscript \ ./Rscript.c mkdir -p -- /build/buildd/r-base-3.0.2/debian/r-base-core/usr/lib/pkgconfig make[3]: Leaving directory `/build/buildd/r-base-3.0.2/src/unix' make[3]: Entering directory `/build/buildd/r-base-3.0.2/src/main' mkdir -p -- /build/buildd/r-base-3.0.2/debian/r-base-core/usr/lib/R/bin/exec make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/main' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/main' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/main' mkdir -p -- /build/buildd/r-base-3.0.2/debian/r-base-core/usr/lib/R/lib make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/main' make[3]: Leaving directory `/build/buildd/r-base-3.0.2/src/main' make[3]: Entering directory `/build/buildd/r-base-3.0.2/src/modules' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/internet' mkdir -p -- /build/buildd/r-base-3.0.2/debian/r-base-core/usr/lib/R/modules make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/internet' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/lapack' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/lapack' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/vfonts' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/vfonts' make[4]: Entering directory `/build/buildd/r-base-3.0.2/src/modules/X11' make[4]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules/X11' make[3]: Leaving directory `/build/buildd/r-base-3.0.2/src/modules' make[3]: Entering directory `/build/buildd/r-base-3.0.2/src/library' mkdir -p -- /build/buildd/r-base-3.0.2/debian/r-base-core/usr/lib/R/library installing packages ... building HTML index ... make[3]: Leaving directory `/build/buildd/r-base-3.0.2/src/library' make[2]: Leaving directory `/build/buildd/r-base-3.0.2/src' make[2]: Entering directory `/build/buildd/r-base-3.0.2/tests' make[2]: Nothing to be done for `install'. make[2]: Leaving directory `/build/buildd/r-base-3.0.2/tests' make[1]: Leaving directory `/build/buildd/r-base-3.0.2' (cd src/unix; \ rm -vf Rscript /build/buildd/r-base-3.0.2/debian/r-base-core/usr/bin/Rscript; \ /usr/bin/make CFLAGS="-O3 -pipe -g -D_REENTRANT" \ CXXFLAGS="-O3 -pipe -g -D_REENTRANT" \ FFLAGS="-O3 -pipe -g -D_REENTRANT" \ CC="gcc -std=gnu99" \ CXX=g++ \ F77=gfortran \ RHOME=/usr/lib/R \ DESTDIR=/build/buildd/r-base-3.0.2/debian/r-base-core \ install-Rscript ) removed 'Rscript' removed '/build/buildd/r-base-3.0.2/debian/r-base-core/usr/bin/Rscript' make[1]: Entering directory `/build/buildd/r-base-3.0.2/src/unix' gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -O3 -pipe -g -D_REENTRANT -DR_HOME='"/usr/lib/R"' -o Rscript \ ./Rscript.c make[1]: Leaving directory `/build/buildd/r-base-3.0.2/src/unix' #ls -ltr /build/buildd/r-base-3.0.2/debian/r-base-core/usr/bin/ #strings src/unix/Rscript cp -vax src/unix/Rscript /build/buildd/r-base-3.0.2/debian/r-base-core/usr/bin/ 'src/unix/Rscript' -> '/build/buildd/r-base-3.0.2/debian/r-base-core/usr/bin/Rscript' #ls -ltr /build/buildd/r-base-3.0.2/debian/r-base-core/usr/bin/ #strings /build/buildd/r-base-3.0.2/debian/r-base-core/usr/bin/Rscript (cd src/nmath/standalone; \ /usr/bin/make DESTDIR=/build/buildd/r-base-3.0.2/debian/r-base-core install ) make[1]: Entering directory `/build/buildd/r-base-3.0.2/src/nmath/standalone' make[2]: Entering directory `/build/buildd/r-base-3.0.2/src/include' make[2]: `Rmath.h' is up to date. make[2]: Leaving directory `/build/buildd/r-base-3.0.2/src/include' /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/R/include/Rmath.h is unchanged make[1]: Leaving directory `/build/buildd/r-base-3.0.2/src/nmath/standalone' chmod a+x /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/R/share/sh/echo.sh rm -v /build/buildd/r-base-3.0.2/debian/r-base-core/usr/lib/R/COPYING removed '/build/buildd/r-base-3.0.2/debian/r-base-core/usr/lib/R/COPYING' (cd /build/buildd/r-base-3.0.2/debian/r-base-core/usr/lib/R/; \ ln -s ../../share/common-licenses/GPL-2 COPYING) rm -v /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/R/doc/COPYING removed '/build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/R/doc/COPYING' (cd /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/R/doc; \ ln -s ../../../share/common-licenses/GPL-2 COPYING) # edd 03 Oct 2006 use link into /usr/share/, not /usr/lib/ (cd /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/texmf/tex/latex && \ ln -s ../../../R/share/texmf R) dh_movefiles --sourcedir=debian/r-base-core -pr-doc-html dh_movefiles --sourcedir=debian/r-base-core -pr-base-html dh_movefiles --sourcedir=debian/r-base-core -pr-base-latex make prefix=/build/buildd/r-base-3.0.2/debian/r-base-core/usr \ rdocdir=/build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/R/doc \ install-pdf make[1]: Entering directory `/build/buildd/r-base-3.0.2' make[2]: Entering directory `/build/buildd/r-base-3.0.2/doc/manual' creating doc/manual/version.tex collecting LaTeX docs for package 'base' ... Converting parsed Rd's to LaTeX ......................................... collecting LaTeX docs for package 'tools' ... Converting parsed Rd's to LaTeX ..... collecting LaTeX docs for package 'utils' ... Converting parsed Rd's to LaTeX ............. collecting LaTeX docs for package 'grDevices' ... Converting parsed Rd's to LaTeX ...... collecting LaTeX docs for package 'graphics' ... Converting parsed Rd's to LaTeX ....... collecting LaTeX docs for package 'stats' ... Converting parsed Rd's to LaTeX .............................. collecting LaTeX docs for package 'datasets' ... Converting parsed Rd's to LaTeX ........ collecting LaTeX docs for package 'methods' ... Converting parsed Rd's to LaTeX ....... collecting LaTeX docs for package 'grid' ... Converting parsed Rd's to LaTeX ........ collecting LaTeX docs for package 'splines' ... Converting parsed Rd's to LaTeX . collecting LaTeX docs for package 'stats4' ... Converting parsed Rd's to LaTeX . collecting LaTeX docs for package 'tcltk' ... Converting parsed Rd's to LaTeX . collecting LaTeX docs for package 'compiler' ... Converting parsed Rd's to LaTeX collecting LaTeX docs for package 'parallel' ... Converting parsed Rd's to LaTeX . PDF/LaTeX documentation: full reference index ... This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013/Debian) restricted \write18 enabled. entering extended mode (./fullrefman.tex LaTeX2e <2011/06/27> Babel <3.9f> and hyphenation patterns for 2 languages loaded. (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2007/10/19 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (../../share/texmf/tex/latex/Rd.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def)) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/inconsolata.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/pdftex-def/pdftex.def (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty))) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg)) Package hyperref Message: Driver (autodetected): hpdftex. 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Package hyperref Warning: Option `pagebackref' has already been used, (hyperref) setting the option has no effect on input line 361. ) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/graphics.cfg))) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty) Writing index file fullrefman.idx No file fullrefman.aux. (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/context/base/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [1] [2] (./base-pkg.tex Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd) Underfull \hbox (badness 4595) in paragraph at lines 40--43 []\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h igh-est, for [1] [2] Underfull \hbox (badness 1960) in paragraph at lines 137--145 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1 /ptm/m/n/10 such that \T1/zi4/m/n/10 1 - x != 1\T1/ptm/m/n/10 . Underfull \hbox (badness 10000) in paragraph at lines 137--145 \T1/ptm/m/n/10 It equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1 /ptm/m/n/10 if Underfull \hbox (badness 10000) in paragraph at lines 137--145 \T1/zi4/m/n/10 double.base \T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.roundin g \T1/ptm/m/n/10 is 0; oth-er-wise, it is Underfull \hbox (badness 1668) in paragraph at lines 148--155 []\T1/ptm/m/n/10 the largest nor-mal-ized floating-point num-ber. Typ-i-cally, it is equal to [3] [4] [5] Underfull \hbox (badness 1178) in paragraph at lines 291--295 []\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/ 10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues [6] Underfull \hbox (badness 3977) in paragraph at lines 372--375 []\T1/ptm/m/n/10 logical: should \T1/zi4/m/n/10 minlength \T1/ptm/m/n/10 be ob- served strictly? Note that set-ting [7] [8] Underfull \hbox (badness 2556) in paragraph at lines 498--504 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ', [9] [10] [11] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [12] [13] [14] [15] [16] [17] Underfull \hbox (badness 2671) in paragraph at lines 1061--1064 []\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec- tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis t of length [18] [19] [20] [21] Underfull \hbox (badness 4072) in paragraph at lines 1270--1276 []\T1/zi4/m/n/10 %% \T1/ptm/m/n/10 in-di-cates \T1/zi4/m/n/10 x mod y \T1/ptm/m /n/10 and \T1/zi4/m/n/10 %/% \T1/ptm/m/n/10 in-di-cates in-te-ger di-vi-sion. I t is guar-an-teed that [22] [23] [24] [25] [26] [27] [28] [29] [30] [31] Underfull \hbox (badness 10000) in paragraph at lines 1953--1955 []\T1/ptm/m/n/10 a date-time ob-ject, or some-thing which can be co-erced by [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] Underfull \vbox (badness 10000) has occurred while \output is active [48] [49] [50] [51] [52] [53] [54] Underfull \hbox (badness 10000) in paragraph at lines 3377--3379 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [55] [56] [57] [58] [59] [60] [61] [62] [63] Underfull \hbox (badness 2970) in paragraph at lines 3955--3961 []\T1/ptm/m/n/10 is there sup-port the [][]\T1/zi4/m/n/10 svg[][][]\T1/ptm/m/n/ 10 , [][]\T1/zi4/m/n/10 cairo_pdf[][][] \T1/ptm/m/n/10 and [][]\T1/zi4/m/n/10 c airo_ps[][][] \T1/ptm/m/n/10 de-vices, and for [64] [65] [66] [67] [68] [69] [70] [71] [72] Underfull \hbox (badness 2521) in paragraph at lines 4511--4513 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] Underfull \hbox (badness 2096) in paragraph at lines 5725--5738 []\T1/ptm/m/n/10 New restarts for \T1/zi4/m/n/10 withRestarts \T1/ptm/m/n/10 ca n be spec-i-fied in sev-eral ways. The sim-plest is in [92] [93] [94] [95] Underfull \hbox (badness 10000) in paragraph at lines 6048--6051 []\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo st gen-eral form (from RFC1738) is [96] [97] [98] Underfull \hbox (badness 3568) in paragraph at lines 6263--6270 \T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as [99] [100] Underfull \vbox (badness 3803) has occurred while \output is active [101] Underfull \vbox (badness 10000) has occurred while \output is active [102] [103] [104] [105] [106] [107] [108] Underfull \hbox (badness 4595) in paragraph at lines 6865--6868 []\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h igh-est, for [109] Underfull \hbox (badness 2351) in paragraph at lines 6922--6925 [][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T 1/ptm/m/n/10 , [110] [111] [112] [113] Underfull \hbox (badness 10000) in paragraph at lines 7167--7178 []\T1/zi4/m/n/10 data.frame \T1/ptm/m/n/10 con-verts each of its ar-gu-ments to a data frame by call-ing [114] Underfull \hbox (badness 4479) in paragraph at lines 7239--7248 [][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[] [][] \T1/ptm/m/n/10 (for the col-umn names), Underfull \hbox (badness 2469) in paragraph at lines 7239--7248 [][]\T1/zi4/m/n/10 [.data.frame[][][] \T1/ptm/m/n/10 for sub-set-ting meth-ods, [][]\T1/zi4/m/n/10 Math.data.frame[][][] \T1/ptm/m/n/10 etc, about \T1/ptm/m/i t/10 Group \T1/ptm/m/n/10 meth-ods for [115] [116] [117] [118] [119] [120] [121] [122] [123] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] Underfull \hbox (badness 1394) in paragraph at lines 8773--8778 []\T1/ptm/m/n/10 Subtraction of date-time ob-jects gives an ob-ject of this cla ss, by call-ing \T1/zi4/m/n/10 difftime \T1/ptm/m/n/10 with [139] [140] [141] [142] [143] [144] [145] Underfull \hbox (badness 10000) in paragraph at lines 9216--9220 [][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / IEEE _ 754-[]198 5$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wi ki / IEEE _ [146] [147] [148] [149] [150] [151] Underfull \hbox (badness 2150) in paragraph at lines 9599--9602 []\T1/ptm/m/n/10 logical in-di-cat-ing if du-pli-ca-tion should be con-sid-ered from the re-verse Underfull \hbox (badness 6396) in paragraph at lines 9613--9621 []\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len t method def-i-ni-tions for Underfull \hbox (badness 2409) in paragraph at lines 9654--9660 []\T1/ptm/m/n/10 Except for fac-tors, log-i-cal and raw vec-tors the de-fault \ T1/zi4/m/n/10 nmax = NA \T1/ptm/m/n/10 is equiv-a-lent to [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] Underfull \hbox (badness 4569) in paragraph at lines 10683--10687 []\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been passed as an ar-gu-ment Underfull \hbox (badness 2401) in paragraph at lines 10683--10687 \T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller' s en-vi-ron-ment, i.e., one needs [167] Underfull \vbox (badness 3803) has occurred while \output is active [168] [169] [170] [171] [172] [173] [174] Underfull \hbox (badness 2698) in paragraph at lines 11227--11236 []\T1/ptm/m/n/10 Both \T1/zi4/m/n/10 $ \T1/ptm/m/n/10 and \T1/zi4/m/n/10 [[ \T1 /ptm/m/n/10 can be ap-plied to en-vi-ron-ments. Only char-ac-ter in-dices are a l-lowed Underfull \hbox (badness 4341) in paragraph at lines 11227--11236 \T1/ptm/m/n/10 and no par-tial match-ing is done. The se-man-tics of these op-e r-a-tions are those of [175] [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188] [189] Underfull \hbox (badness 2253) in paragraph at lines 12174--12176 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [190] Underfull \hbox (badness 1565) in paragraph at lines 12235--12239 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/ 10 , and [191] Underfull \hbox (badness 10000) in paragraph at lines 12278--12280 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m /n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with [192] [193] Underfull \hbox (badness 1466) in paragraph at lines 12409--12412 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/ zi4/m/n/10 file.copy \T1/ptm/m/n/10 and [194] Underfull \hbox (badness 10000) in paragraph at lines 12515--12519 [][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [ ][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 12526--12529 [][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Hard _ link$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / [195] [196] [197] [198] Underfull \hbox (badness 3965) in paragraph at lines 12773--12777 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] Underfull \hbox (badness 4429) in paragraph at lines 13481--13484 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] \T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for [210] Underfull \hbox (badness 10000) in paragraph at lines 13567--13569 []\T1/ptm/m/n/10 If you set \T1/zi4/m/n/10 format \T1/ptm/m/n/10 it over-rides the set-ting of \T1/zi4/m/n/10 mode\T1/ptm/m/n/10 , so Underfull \hbox (badness 10000) in paragraph at lines 13573--13577 []\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b ers on the dec-i-mal point, so [211] [212] Underfull \vbox (badness 3803) has occurred while \output is active [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223] Underfull \hbox (badness 1092) in paragraph at lines 14330--14335 [][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t he DLL has been loaded us-ing [224] [225] [226] [227] Underfull \hbox (badness 6741) in paragraph at lines 14578--14582 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \ T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10 , [228] [229] [230] [231] Underfull \hbox (badness 1867) in paragraph at lines 14876--14883 []\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][] [] (or char-ac-ter string for [232] [233] [234] [235] Underfull \vbox (badness 10000) has occurred while \output is active [236] [237] Underfull \hbox (badness 3679) in paragraph at lines 15240--15242 []\T1/ptm/m/n/10 The TRE li-brary of Ville Lau-rikari ([][]$\T1/zi4/m/n/10 http : / / laurikari . net / tre/$[][]\T1/ptm/m/n/10 ) is used ex-cept for [238] [239] [240] [241] [242] [243] Underfull \hbox (badness 1478) in paragraph at lines 15708--15711 []\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [244] [245] [246] [247] [248] [249] [250] [251] [252] [253] [254] Underfull \hbox (badness 1442) in paragraph at lines 16391--16393 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see [255] Underfull \hbox (badness 2452) in paragraph at lines 16483--16499 [][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 , [256] [257] [258] [259] [260] [261] [262] [263] [264] [265] [266] Underfull \hbox (badness 4739) in paragraph at lines 17130--17132 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [267] [268] [269] [270] [271] [272] [273] [274] [275] [276] [277] [278] [279] [280] Underfull \hbox (badness 10000) in paragraph at lines 18012--18016 []\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory Underfull \hbox (badness 2460) in paragraph at lines 18012--18016 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/ 10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T 1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10 ' [281] [282] Underfull \hbox (badness 1014) in paragraph at lines 18165--18170 []\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1 0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if [283] [284] [285] [286] [287] [288] [289] [290] [291] [292] [293] Underfull \hbox (badness 1264) in paragraph at lines 18872--18877 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [294] [295] [296] [297] [298] [299] [300] [301] [302] [303] [304] [305] Underfull \hbox (badness 10000) in paragraph at lines 19606--19608 []\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n /10 has the prop-erty that [306] [307] [308] [309] [310] [311] [312] [313] [314] [315] [316] [317] [318] [319] [320] [321] Underfull \hbox (badness 1655) in paragraph at lines 20594--20600 [][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Data _ compressi on$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-sion, [322] [323] Underfull \hbox (badness 1484) in paragraph at lines 20755--20763 []\T1/ptm/m/n/10 The address-space limit is 2Gb un-der 32-bit Win-dows un-less the OS's de-fault has been [324] [325] [326] [327] [328] Underfull \hbox (badness 2790) in paragraph at lines 21022--21025 []\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s ages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 21022--21025 \T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m es-sages, so can be sup-pressed by [329] [330] [331] [332] [333] [334] Underfull \hbox (badness 10000) in paragraph at lines 21461--21464 []\T1/ptm/m/n/10 It is pos-si-ble to up-date just part of the names at-tribute via the gen-eral rules: Underfull \hbox (badness 10000) in paragraph at lines 21461--21464 \T1/ptm/m/n/10 see the ex-am-ples. This works be-cause the ex-pres-sion there i s eval-u-ated as [335] [336] [337] [338] [339] [340] [341] [342] [343] [344] [345] [346] [347] [348] [349] [350] [351] Underfull \hbox (badness 1199) in paragraph at lines 22508--22514 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 is.numeric \T1/ptm/m/n/ 10 re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 if its ar-gu-ment is of [][]mode [][][] \T1/zi4/m/n/10 "numeric" Underfull \hbox (badness 2027) in paragraph at lines 22508--22514 \T1/ptm/m/n/10 ([][]type[][][] \T1/zi4/m/n/10 "double" \T1/ptm/m/n/10 or type \ T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 ) and not a fac-tor, and \T1/zi4/m/n/10 F ALSE \T1/ptm/m/n/10 oth-er-wise. That is, [352] [353] [354] [355] [356] [357] [358] [359] Underfull \hbox (badness 1038) in paragraph at lines 23037--23046 []\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/ 10 R \T1/ptm/m/n/10 starts up. Ini-tially Underfull \hbox (badness 1881) in paragraph at lines 23047--23050 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 23066--23068 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [360] Underfull \hbox (badness 10000) in paragraph at lines 23130--23139 []\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/zi4/m /n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to Underfull \hbox (badness 2600) in paragraph at lines 23130--23139 \T1/ptm/m/n/10 `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /bin/pager\T1/pt m/m/n/10 ', which se-lects a pager via the \T1/zi4/m/n/10 PAGER \T1/ptm/m/n/10 en-vi-ron-ment vari-able Underfull \hbox (badness 2142) in paragraph at lines 23140--23146 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able Underfull \hbox (badness 1968) in paragraph at lines 23153--23158 []\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 23163--23172 []\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v alue [361] [362] [363] Underfull \hbox (badness 10000) in paragraph at lines 23404--23410 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/ n/10 setRepositories[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 23404--23410 \T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "http://www.bioconductor.org"\ T1/ptm/m/n/10 ' or the Eu-ro-pean mir- Underfull \hbox (badness 10000) in paragraph at lines 23404--23410 \T1/ptm/m/n/10 ror `\T1/zi4/m/n/10 "http://bioconductor.statistik.tu-dortmund.d e"\T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 10000) in paragraph at lines 23416--23419 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][ ][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10 and Underfull \hbox (badness 2689) in paragraph at lines 23441--23443 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see [364] Underfull \hbox (badness 7203) in paragraph at lines 23469--23472 []\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/ n/10 and Underfull \hbox (badness 3128) in paragraph at lines 23479--23485 \T1/ptm/m/n/10 Pos-si-ble val-ues are \T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (t he de-fault ex-cept un-der the CRAN OS X build) Underfull \hbox (badness 1881) in paragraph at lines 23479--23485 \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "mac.binary."\T1/ptm/m/n/10 . Win-dows uses \ T1/zi4/m/n/10 "win.binary"\T1/ptm/m/n/10 . (\T1/zi4/m/n/10 "mac.binary.leopard" \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 23487--23494 []\T1/ptm/m/n/10 URLs of the repos-i-to-ries for use by [][]\T1/zi4/m/n/10 upda te.packages[][][]\T1/ptm/m/n/10 . De-faults to Underfull \hbox (badness 10000) in paragraph at lines 23487--23494 \T1/zi4/m/n/10 c(CRAN="@CRAN@")\T1/ptm/m/n/10 , a value that causes some util-i -ties to prompt for a Underfull \hbox (badness 6380) in paragraph at lines 23487--23494 \T1/ptm/m/n/10 CRAN mir-ror. To avoid this do set the CRAN mir-ror, by some-thi ng like Underfull \hbox (badness 1082) in paragraph at lines 23487--23494 \T1/zi4/m/n/10 local({r <- getOption("repos"); r["CRAN"] <- "http://my.local.cr an"; [365] [366] [367] [368] Underfull \vbox (badness 3803) has occurred while \output is active [369] Underfull \hbox (badness 10000) in paragraph at lines 23795--23799 []\T1/ptm/m/n/10 The outer prod-uct of the ar-rays \T1/zi4/m/n/10 X \T1/ptm/m/n /10 and \T1/zi4/m/n/10 Y \T1/ptm/m/n/10 is the ar-ray \T1/zi4/m/n/10 A \T1/ptm/ m/n/10 with di-men-sion Underfull \hbox (badness 10000) in paragraph at lines 23795--23799 \T1/zi4/m/n/10 c(dim(X), dim(Y)) \T1/ptm/m/n/10 where el-e-ment \T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] [370] [371] [372] [373] [374] Underfull \hbox (badness 1748) in paragraph at lines 24116--24120 \T1/ptm/m/n/10 seem un-de-sir-able, e.g., when past-ing two char-ac-ter vec-tor s, or very de-sir-able, e.g. in [375] [376] [377] [378] [379] [380] [381] [382] Underfull \hbox (badness 2726) in paragraph at lines 24615--24618 []\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di -cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put, see [383] [384] [385] [386] [387] [388] [389] [390] [391] [392] [393] [394] [395] Underfull \hbox (badness 1052) in paragraph at lines 25420--25425 []\T1/zi4/m/n/10 qr.X \T1/ptm/m/n/10 re-turns $\OML/cmm/b/it/10 X$\T1/ptm/m/n/1 0 , the orig-i-nal ma-trix from which the qr ob-ject was con-structed, pro-vide d [396] [397] [398] [399] [400] [401] [402] [403] [404] [405] Underfull \hbox (badness 1533) in paragraph at lines 26125--26128 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [406] [407] [408] [409] [410] [411] [412] [413] [414] [415] [416] [417] [418] [419] [420] [421] [422] [423] [424] [425] [426] [427] [428] [429] [430] [431] Underfull \hbox (badness 10000) in paragraph at lines 27753--27757 []\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n /10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 27753--27757 \T1/zi4/m/n/10 "(?[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t he matches are also re-turned by name. Underfull \hbox (badness 6188) in paragraph at lines 27776--27778 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p ubs . opengroup . org / onlinepubs / 9699919799 / [432] [433] [434] [435] [436] [437] [438] [439] [440] [441] [442] [443] [444] [445] [446] [447] [448] [449] [450] Underfull \hbox (badness 10000) in paragraph at lines 28975--28978 []\T1/zi4/m/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my c ur-rent workspace', i.e., [451] [452] [453] [454] Underfull \hbox (badness 2302) in paragraph at lines 29175--29182 []\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d e-fined as $[]$, Underfull \hbox (badness 2837) in paragraph at lines 29175--29182 \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non -missing Underfull \hbox (badness 2980) in paragraph at lines 29175--29182 \T1/ptm/m/n/10 val-ues. In the case \T1/zi4/m/n/10 center = TRUE\T1/ptm/m/n/10 , this is the same as the stan-dard de-vi-a-tion, Underfull \hbox (badness 2181) in paragraph at lines 29175--29182 \T1/ptm/m/n/10 but in gen-eral it is not. (To scale by the stan-dard de-vi-a-ti ons with-out cen-ter-ing, use [455] [456] Underfull \hbox (badness 2261) in paragraph at lines 29328--29333 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i t ap-plies to all fields; oth-er-wise, if Underfull \hbox (badness 10000) in paragraph at lines 29355--29361 []\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac- ters [457] Underfull \hbox (badness 10000) in paragraph at lines 29428--29433 []\T1/ptm/m/n/10 Note that since \T1/zi4/m/n/10 sep \T1/ptm/m/n/10 is a sep-a-r a-tor and not a ter-mi-na-tor, read-ing a file by [458] [459] [460] [461] [462] [463] [464] [465] [466] [467] [468] [469] [470] [471] [472] [473] [474] [475] [476] [477] [478] [479] [480] [481] [482] [483] [484] [485] [486] [487] [488] [489] [490] [491] [492] [493] [494] [495] [496] [497] [498] [499] [500] Underfull \hbox (badness 1072) in paragraph at lines 32177--32181 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 32182--32186 []\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/ 10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 - -no-init-file\T1/ptm/m/n/10 ', Underfull \hbox (badness 10000) in paragraph at lines 32210--32216 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 32210--32216 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, e.g. Underfull \hbox (badness 3343) in paragraph at lines 32223--32230 \T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 32223--32230 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 32223--32230 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [501] [502] [503] [504] [505] Underfull \hbox (badness 10000) in paragraph at lines 32513--32519 []\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form at \T1/ptm/m/n/10 meth-ods is [506] [507] [508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] [519] [520] [521] [522] [523] [524] [525] [526] [527] [528] Underfull \vbox (badness 10000) has occurred while \output is active [529] [530] Underfull \hbox (badness 4416) in paragraph at lines 34070--34072 []\T1/ptm/m/n/10 Argument \T1/zi4/m/n/10 names \T1/ptm/m/n/10 was in-tro-duced in \T1/phv/m/n/10 R \T1/ptm/m/n/10 2.13.0 to avoid need-ing the com-mon use of [531] Underfull \hbox (badness 3333) in paragraph at lines 34167--34172 []\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi s may need to be matched ex-plic-itly: for ex-am-ple [532] [533] [534] [535] [536] [537] [538] [539] [540] [541] Underfull \hbox (badness 1472) in paragraph at lines 34774--34777 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee p their source in-clud-ing com-ments, see [542] [543] [544] [545] [546] [547] [548] [549] [550] [551] Underfull \hbox (badness 2671) in paragraph at lines 35431--35434 []\T1/ptm/m/n/10 levels to re-move for all fac-tors in \T1/zi4/m/n/10 ...\T1/pt m/m/n/10 . If set to \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 , it im-plies [552] [553] [554] [555] [556] [557] Underfull \hbox (badness 10000) in paragraph at lines 35829--35832 [][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [ ][]$http : / / developer . r-[]project . org / [558] [559] Underfull \hbox (badness 10000) in paragraph at lines 35950--35954 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 getTaskCallbackNames [][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer . [560] Underfull \hbox (badness 10000) in paragraph at lines 36012--36016 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[ ][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer . [561] [562] [563] [564] [565] [566] [567] [568] [569] [570] [571] [572] [573] [574] [575] [576] [577] [578] Underfull \hbox (badness 1990) in paragraph at lines 37137--37145 []\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e r-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 37137--37145 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less [579] [580] [581] [582] Underfull \hbox (badness 1515) in paragraph at lines 37406--37411 []\T1/ptm/m/n/10 On most plat-forms `file' in-cludes sym-bolic links, fi-fos an d sock-ets. Prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 2.15.0 [583] [584] [585] Underfull \hbox (badness 1917) in paragraph at lines 37636--37643 []\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/ ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute [586] [587] [588] [589] [590] [591] [592] [593] [594] Underfull \hbox (badness 3668) in paragraph at lines 38203--38205 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di- ately, even if [595] [596] Underfull \hbox (badness 2401) in paragraph at lines 38304--38308 []\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [597] [598] [599] Underfull \hbox (badness 6542) in paragraph at lines 38481--38486 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m /n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is [600] [601] [602] Underfull \vbox (badness 3803) has occurred while \output is active [603] [604] [605] [606] Underfull \hbox (badness 10000) in paragraph at lines 38909--38914 []\T1/ptm/m/n/10 This is a spe-cial case of rank-ing, but as a less gen-eral fu nc-tion than [][]\T1/zi4/m/n/10 rank[][][] Underfull \hbox (badness 10000) in paragraph at lines 38909--38914 \T1/ptm/m/n/10 is more suit-able to be made generic. The de-fault method is sim -i-lar to [607] Underfull \hbox (badness 5417) in paragraph at lines 38999--39003 []\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [608] Underfull \hbox (badness 10000) in paragraph at lines 39060--39064 []\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard ' reg-exps, in-clud-ing el-e-ments named [609] [610]) (./compiler-pkg.tex Chapter 2. [611] [612] [613] [614]) (./datasets-pkg.tex Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 12--14 []\T1/ptm/m/n/10 This pack-age con-tains a va-ri-ety of datasets. For a com-ple te list, use [615] [616] [617] [618] [619] [620] [621] [622] [623] [624] [625] [626] [627] [628] [629] [630] [631] [632] [633] [634] [635] [636] [637] [638] [639] [640] [641] [642] [643] [644] [645] [646] [647] [648] [649] [650] [651] [652] [653] [654] [655] [656] [657] [658] [659] [660] [661] Underfull \vbox (badness 10000) has occurred while \output is active [662] [663] [664] [665] [666] [667] [668] [669] [670] [671] [672] [673] [674] [675] [676] [677] [678] [679] [680] Underfull \hbox (badness 1325) in paragraph at lines 3873--3876 []\T1/ptm/m/n/10 For back-ground on Bristle-cone pines and Methuse-lah Walk, se e [][]$\T1/zi4/m/n/10 http : / / www . sonic . net / [681] Underfull \vbox (badness 10000) has occurred while \output is active [682] [683] [684] [685] Underfull \vbox (badness 10000) has occurred while \output is active [686] Underfull \vbox (badness 10000) has occurred while \output is active [687] [688] [689] [690] [691] [692] [693] [694]) (./grDevices-pkg.tex Chapter 4. [695] [696] [697] [698] [699] [700] [701] [702] [703] [704] [705] [706] [707] [708] [709] [710] [711] Underfull \hbox (badness 5175) in paragraph at lines 1048--1050 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [712] [713] [714] Underfull \hbox (badness 1852) in paragraph at lines 1245--1248 []\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col- ors that will be used in plot-ting, call-ing [715] [716] [717] Underfull \hbox (badness 1490) in paragraph at lines 1448--1453 \T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\ T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/ 10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and [718] Underfull \hbox (badness 2698) in paragraph at lines 1502--1505 []\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 if the de-vice does not sup-port cap-ture, oth-er-wise a ma-trix of color names (for [719] Underfull \hbox (badness 10000) in paragraph at lines 1571--1575 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , the func-tion also re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 when [720] [721] [722] [723] [724] Underfull \hbox (badness 1033) in paragraph at lines 1854--1867 \T1/zi4/m/n/10 "pgnm"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pgnmraw"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pnm"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pnmraw"\T1/ptm/m/n/10 , \T 1/zi4/m/n/10 "ppm"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "ppmraw"\T1/ptm/m/n/10 , \T1/ zi4/m/n/10 "pkm"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pkmraw"\T1/ptm/m/n/10 , \T1/zi 4/m/n/10 "tiffcrle"\T1/ptm/m/n/10 , Underfull \hbox (badness 3758) in paragraph at lines 1854--1867 \T1/zi4/m/n/10 "tiffg3"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "tiffg32d"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "tiffg4"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "tifflzw"\T1/ptm/m/n/ 10 , \T1/zi4/m/n/10 "tiffpack"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "tiff12nc"\T1/ptm /m/n/10 , \T1/zi4/m/n/10 "tiff24nc"\T1/ptm/m/n/10 , Underfull \hbox (badness 3128) in paragraph at lines 1854--1867 \T1/zi4/m/n/10 "tiff32nc" "psmono"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "psgray"\T1/p tm/m/n/10 , \T1/zi4/m/n/10 "psrgb"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bit"\T1/ptm/ m/n/10 , \T1/zi4/m/n/10 "bitrgb"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bitcmyk"\T1/pt m/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 , Underfull \hbox (badness 1546) in paragraph at lines 1854--1867 \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/1 0 , \T1/zi4/m/n/10 "png16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "png256"\T1/ptm/m/n/1 0 , \T1/zi4/m/n/10 "png16m"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "png48"\T1/ptm/m/n/1 0 , \T1/zi4/m/n/10 "jpeg"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "jpeggray"\T1/ptm/m/n/ 10 , [725] Underfull \hbox (badness 10000) in paragraph at lines 1963--1965 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [726] [727] [728] Underfull \hbox (badness 6758) in paragraph at lines 2115--2118 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [729] [730] [731] [732] [733] [734] [735] [736] Underfull \hbox (badness 10000) in paragraph at lines 2618--2619 [737] [738] [739] [740] [741] [742] [743] Underfull \hbox (badness 1152) in paragraph at lines 3056--3058 []\T1/ptm/m/n/10 A length two in-te-ger vec-tor \T1/zi4/m/n/10 nr, nc \T1/ptm/m /n/10 giv-ing the num-ber of rows and columns, ful-fill-ing [744] [745] [746] [747] [748] Underfull \hbox (badness 2856) in paragraph at lines 3377--3380 []\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv e a C in-te-ger for-mat such as Underfull \hbox (badness 2662) in paragraph at lines 3391--3393 []\T1/ptm/m/n/10 title string to em-bed as the `\T1/zi4/m/n/10 /Title\T1/ptm/m/ n/10 ' field in the file. De-faults to [749] [750] Underfull \hbox (badness 1173) in paragraph at lines 3507--3517 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 paper \T1/ptm/m/n/10 ar-gu-ment sets the `\ T1/zi4/m/n/10 /MediaBox\T1/ptm/m/n/10 ' en-try in the file, which de-faults to \T1/zi4/m/n/10 width \T1/ptm/m/n/10 by [751] [752] [753] [754] [755] [756] [757] Underfull \vbox (badness 10000) has occurred while \output is active [758] [759] Underfull \vbox (badness 3803) has occurred while \output is active [760] [761] Underfull \hbox (badness 1067) in paragraph at lines 4208--4215 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [762] [763] [764] Underfull \hbox (badness 1789) in paragraph at lines 4430--4432 []\T1/ptm/m/n/10 title string to em-bed as the \T1/zi4/m/n/10 Title \T1/ptm/m/n /10 com-ment in the file. De-faults to [765] Underfull \hbox (badness 1377) in paragraph at lines 4480--4485 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues Underfull \hbox (badness 2671) in paragraph at lines 4507--4515 \T1/ptm/m/n/10 For use in this way you will prob-a-bly want to use [][]\T1/zi4/ m/n/10 setEPS[][][]() \T1/ptm/m/n/10 to set the de-faults as [766] Underfull \hbox (badness 1418) in paragraph at lines 4556--4563 \T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4 /m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/ zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm /m/n/10 , Underfull \hbox (badness 2443) in paragraph at lines 4564--4573 \T1/ptm/m/n/10 PostScript de-vice is us-ing URW fonts, you will ob-tain ac-cess to more char-ac-ters and Underfull \hbox (badness 2653) in paragraph at lines 4564--4573 \T1/ptm/m/n/10 more ap-pro-pri-ate met-rics by us-ing these names. To make thes e eas-ier to re-mem-ber, Underfull \hbox (badness 1755) in paragraph at lines 4574--4576 []\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East Asian lan-guages -- see [767] [768] Underfull \hbox (badness 1057) in paragraph at lines 4685--4690 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \ T1/zi4/m/n/10 "rgb"\T1/ptm/m/n/10 ) (which is RGB+gray) and Underfull \hbox (badness 7344) in paragraph at lines 4745--4747 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [769] [770] [771] Underfull \hbox (badness 2035) in paragraph at lines 4869--4878 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 4869--4878 \T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/ n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 4869--4878 \T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 , [772] Underfull \hbox (badness 6775) in paragraph at lines 4936--4944 \T1/ptm/m/n/10 can be found at [][]$\T1/zi4/m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu / chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Underfull \hbox (badness 3000) in paragraph at lines 4936--4944 \T1/ptm/m/n/10 Lunde's CJKV re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly . com / pub / examples / nutshell / cjkv / Underfull \hbox (badness 7344) in paragraph at lines 4955--4957 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [773] [774] Underfull \hbox (badness 1546) in paragraph at lines 5075--5083 []\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T 1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/ n/10 , [775] Underfull \hbox (badness 1648) in paragraph at lines 5152--5156 []\T1/ptm/m/n/10 title for the Quartz win-dow (ap-plies to on-screen out-put on ly), de-fault [776] [777] [778] [779] [780] [781] [782] Underfull \hbox (badness 10000) in paragraph at lines 5569--5572 []\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red /green/blue) into HSV space [783] [784] [785] [786] [787] [788] [789] Underfull \hbox (badness 1189) in paragraph at lines 5965--5967 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [790] Underfull \hbox (badness 10000) in paragraph at lines 6063--6065 []\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK lan-guages and [791] [792] [793] [794] [795] Underfull \hbox (badness 3780) in paragraph at lines 6354--6360 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1 0 "AvantGarde"\T1/ptm/m/n/10 , [796] [797] Underfull \hbox (badness 2680) in paragraph at lines 6550--6552 []\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of [798] [799] [800]) (./graphics-pkg.tex Chapter 5. [801] [802] [803] [804] [805] [806] [807] [808] [809] [810] [811] Underfull \hbox (badness 10000) in paragraph at lines 690--697 []\T1/zi4/m/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/p tm/m/n/10 in-ter-face to the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/pt m/m/n/10 in [812] [813] [814] [815] [816] [817] [818] [819] [820] [821] Underfull \hbox (badness 4634) in paragraph at lines 1253--1256 [][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n /10 , [822] [823] [824] [825] [826] [827] [828] [829] [830] [831] [832] [833] [834] [835] [836] [837] [838] Underfull \hbox (badness 1009) in paragraph at lines 2285--2292 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [839] [840] [841] [842] [843] [844] [845] [846] [847] [848] [849] [850] [851] [852] [853] [854] [855] [856] [857] [858] [859] [860] Underfull \vbox (badness 10000) has occurred while \output is active [861] [862] [863] [864] Underfull \hbox (badness 1867) in paragraph at lines 3911--3915 []\T1/ptm/m/n/10 vector of back-ground (fill) col-ors for the open plot sym-bol s given by [865] [866] [867] [868] [869] [870] [871] [872] Underfull \hbox (badness 1924) in paragraph at lines 4362--4367 []\T1/ptm/m/n/10 a func-tion which in-di-cates what should hap-pen when the dat a con-tain [873] Underfull \hbox (badness 2529) in paragraph at lines 4391--4394 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used: see [874] [875] [876] [877] Underfull \hbox (badness 10000) in paragraph at lines 4735--4741 []\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n /10 (width, height) \T1/ptm/m/n/10 in user co-or-di-nate units. Underfull \hbox (badness 5908) in paragraph at lines 4735--4741 \T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin" ) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that [878] [879] Underfull \hbox (badness 10000) in paragraph at lines 4865--4868 [880 ] Underfull \hbox (badness 10000) in paragraph at lines 4926--4928 Underfull \vbox (badness 10000) has occurred while \output is active [881] [882 ] [883] Underfull \hbox (badness 10000) in paragraph at lines 5119--5121 []\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2 :6\T1/ptm/m/n/10 ) cor-re-spond to [884] [885] [886] [887] [888] Underfull \vbox (badness 10000) has occurred while \output is active [889] [890] [891] [892] [893] [894] [895] [896] [897] [898] [899] [900] [901] [902] [903] [904] [905] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6523--6524 [][] [906 ] [907] [908] [909] [910] [911] [912] [913] [914] [915] [916] [917] Underfull \hbox (badness 1048) in paragraph at lines 7231--7236 \T1/ptm/m/n/10 avoided (see the Warn-ings sec-tion be-low). Split-screen mode i s ex-ited by the com-mand [918] [919] Underfull \hbox (badness 1038) in paragraph at lines 7347--7350 []\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d rawn be-tween the point \T1/zi4/m/n/10 (x0[i], y0[i]) \T1/ptm/m/n/10 and the po int [920] [921] [922] [923] [924] [925] [926] [927] [928] [929] [930] [931] [932] [933] [934] [935] [936] [937] [938] [939] [940] Underfull \hbox (badness 6691) in paragraph at lines 8564--8567 []\T1/ptm/m/n/10 The main ti-tle (on top) us-ing font and size (char-ac-ter ex- pan-sion) Underfull \hbox (badness 2799) in paragraph at lines 8567--8569 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font and size \T1/zi4/m/n/10 par ("font.sub") \T1/ptm/m/n/10 and color [941]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.unit s}) has been already used, duplicate ignored \relax l.8649 \HeaderA{units}{Graphical Units}{units} [942] [943] [944] [945] [946]) (./grid-pkg.tex Chapter 6. Underfull \vbox (badness 10000) has occurred while \output is active [947] [948] [949] [950] [951] [952] [953] Underfull \hbox (badness 2680) in paragraph at lines 405--408 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1 /zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio n of [954] [955] [956] Overfull \vbox (10.43605pt too high) has occurred while \output is active [957] [958] [959] [960] [961] Underfull \hbox (badness 4279) in paragraph at lines 945--954 [][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m /n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 unit[][][]\T1/ptm/m/n/10 , [962] Underfull \vbox (badness 3803) has occurred while \output is active [963] [964] [965] Underfull \hbox (badness 2781) in paragraph at lines 1147--1150 []\T1/ptm/m/n/10 Both func-tions cre-ate an ar-rows grob (a graph-i-cal ob-ject de-scrib-ing ar-rows), but only [966] Underfull \vbox (badness 10000) has occurred while \output is active [967] [968] [969] [970] [971] [972] [973] [974] [975] [976] [977] [978] [979] [980] [981] [982] [983] [984] [985] [986] [987] [988] [989] [990] [991] [992] [993] [994] [995] [996] [997] [998] [999] [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009] [1010] [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020] Underfull \hbox (badness 1067) in paragraph at lines 4358--4361 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1021] [1022] [1023] [1024] Underfull \hbox (badness 7256) in paragraph at lines 4597--4599 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033] [1034] [1035] [1036] [1037] [1038] [1039] [1040] [1041] [1042] [1043] [1044] Underfull \hbox (badness 10000) in paragraph at lines 5804--5810 \T1/ptm/m/n/10 and to spec-ify the min-i-mum or max-i-mum of a list of unit ob- jects (e.g., [1045] [1046] [1047] [1048] [1049] [1050] [1051] [1052] [1053] Underfull \hbox (badness 7649) in paragraph at lines 6266--6269 []\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by do-ing some-thing like [1054] [1055] [1056] [1057]) (./methods-pkg.tex [1058] Chapter 7. [1059] [1060] [1061] [1062] [1063] [1064] [1065] [1066] [1067] [1068] [1069] [1070] [1071] [1072] [1073] [1074] Underfull \vbox (badness 2277) has occurred while \output is active [1075] [1076] [1077] [1078] Underfull \hbox (badness 2237) in paragraph at lines 1432--1434 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \ T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package "\T1/ptm/m/n/10 , also of class [1079] [1080] [1081] [1082] [1083] [1084] [1085] [1086] [1087] Underfull \hbox (badness 10000) in paragraph at lines 2028--2033 []\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c an be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 2028--2033 \T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1 0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the [1088] [1089] [1090] [1091] [1092] [1093] [1094] [1095] Underfull \hbox (badness 10000) in paragraph at lines 2628--2631 []\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o b-jects of class [1096] [1097] Underfull \hbox (badness 1132) in paragraph at lines 2768--2772 []\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1 0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re -turned re-sult is in [1098] Underfull \hbox (badness 1033) in paragraph at lines 2800--2805 \T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store s the [1099] [1100] [1101] [1102] [1103] [1104] [1105] Underfull \hbox (badness 1102) in paragraph at lines 3308--3310 []\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na me of the pack-age (with-out the ex-tra-ne-ous [1106] [1107] [1108] [1109] [1110] Underfull \hbox (badness 10000) in paragraph at lines 3637--3642 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these classes takes spe-cial ar-gu-ments Underfull \hbox (badness 10000) in paragraph at lines 3645--3654 []\T1/ptm/m/n/10 The [1111] [1112] [1113] [1114] [1115] [1116] Underfull \vbox (badness 10000) has occurred while \output is active [1117] [1118] [1119] [1120] [1121] [1122] [1123] [1124] Underfull \hbox (badness 1436) in paragraph at lines 4550--4553 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "SealedMethodDefinition" \T1/ptm/m/n/ 10 is cre-ated by a call to [][]\T1/zi4/m/n/10 setMethod[][][] \T1/ptm/m/n/10 w ith ar-gu-ment Underfull \hbox (badness 1769) in paragraph at lines 4579--4585 []\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4579--4585 \T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T 1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by [1125] [1126] [1127] [1128] [1129] [1130] Underfull \vbox (badness 2111) has occurred while \output is active [1131] [1132] Underfull \vbox (badness 10000) has occurred while \output is active [1133] [1134] Underfull \hbox (badness 1092) in paragraph at lines 5251--5258 \T1/ptm/m/n/10 names cor-re-spond-ing to some or all of the for-mal ar-gu-ments . In the pre-vi-ous ex-am-ple, Underfull \hbox (badness 1117) in paragraph at lines 5251--5258 \T1/ptm/m/n/10 if se-lect-ing class \T1/zi4/m/n/10 "track" \T1/ptm/m/n/10 for \ T1/zi4/m/n/10 x\T1/ptm/m/n/10 , find-ing that the se-lec-tion was an-other meth -ods list and Underfull \hbox (badness 4036) in paragraph at lines 5299--5302 []\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10 the method to use in re-sponse to a [1135] [1136] [1137] [1138] [1139] Underfull \hbox (badness 1087) in paragraph at lines 5619--5624 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1140] [1141] [1142] [1143] Underfull \hbox (badness 2221) in paragraph at lines 5845--5850 []\T1/ptm/m/n/10 Two op-tional method names are in-ter-preted spe-cially, \T1/z i4/m/n/10 initialize \T1/ptm/m/n/10 and [1144] [1145] [1146] [1147] [1148] [1149] [1150] [1151] Underfull \vbox (badness 10000) has occurred while \output is active [1152] [1153]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4} ) has been already used, duplicate ignored \relax l.6703 \aliasA{S4}{S3Part}{S4} [1154] [1155] [1156] [1157]pdfTeX warning (ext4) : destination with the same identifier (name{Rfn.Complex}) has been already use d, duplicate ignored \relax l.6979 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate ignored \relax l.6981 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) has been already used, duplicate igno red \relax l.6982 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination wi th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.6984 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor ed \relax l.6985 \aliasA{Summary}{S4groupGeneric}{Summary} [1158] Underfull \hbox (badness 2050) in paragraph at lines 7046--7050 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1159] [1160] [1161] Underfull \hbox (badness 1286) in paragraph at lines 7229--7231 []\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal ly [1162] [1163] [1164] [1165] [1166] [1167] [1168] [1169] [1170] [1171] [1172] [1173] [1174] [1175] [1176] [1177] [1178] [1179] [1180] [1181] [1182] [1183] Underfull \vbox (badness 10000) has occurred while \output is active [1184] [1185] [1186] [1187] [1188] [1189] [1190] [1191] [1192] [1193] [1194] Underfull \hbox (badness 2894) in paragraph at lines 9562--9566 []\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance in R [][]$\T1/zi4/m/n/10 http : / / stat . stanford . edu / ~jmc4 / [1195] Underfull \hbox (badness 1852) in paragraph at lines 9641--9645 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1196] [1197] [1198] [1199]) (./parallel-pkg.tex [1200] Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 15--17 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4 /m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[ ][][]: see [1201] [1202] [1203] [1204] [1205] [1206] [1207] [1208] [1209] [1210] [1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218] [1219] Underfull \hbox (badness 3386) in paragraph at lines 1221--1224 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R andom.seed \T1/ptm/m/n/10 when the [1220] [1221] [1222]) (./splines-pkg.tex Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1223] [1224] [1225] [1226] [1227] [1228] [1229] [1230] [1231] [1232] [1233] [1234] [1235] [1236] [1237]) (./stats-pkg.tex [1238] Chapter 10. [1239] [1240] [1241] [1242] [1243] [1244] [1245] [1246] [1247] [1248] [1249] [1250] [1251] Underfull \hbox (badness 1412) in paragraph at lines 843--845 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm \T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for [1252] [1253] [1254] [1255] [1256] [1257] [1258] [1259] Underfull \hbox (badness 2503) in paragraph at lines 1327--1330 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1260] [1261] [1262] Underfull \hbox (badness 10000) in paragraph at lines 1506--1510 []\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov", "lm") \T1/ptm/m/n/ 10 or for mul-ti-ple re-sponses of class [1263] [1264] [1265] [1266] [1267] [1268] [1269] [1270] [1271] [1272] [1273] Underfull \hbox (badness 3965) in paragraph at lines 2156--2158 []\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val id for [1274] [1275] [1276] [1277] [1278] Underfull \hbox (badness 3965) in paragraph at lines 2485--2487 []\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val id for [1279] [1280] [1281] [1282] [1283] [1284] [1285] [1286] [1287] [1288] [1289] [1290] Underfull \hbox (badness 2503) in paragraph at lines 3260--3263 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1291] [1292] [1293] [1294] [1295] [1296] [1297] [1298] [1299] [1300] [1301] [1302] [1303] [1304] [1305] [1306] [1307] [1308] [1309] [1310] Underfull \hbox (badness 3989) in paragraph at lines 4482--4489 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1311] [1312] [1313] [1314] [1315] [1316] [1317] [1318] [1319] [1320] Underfull \hbox (badness 2932) in paragraph at lines 5097--5099 []\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se- quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is given by [1321] [1322] [1323] [1324] Underfull \hbox (badness 1142) in paragraph at lines 5338--5350 \T1/ptm/m/n/10 For \T1/zi4/m/n/10 cov()\T1/ptm/m/n/10 , a non-Pearson method is un-usual but avail-able for the sake of com-plete-ness. [1325] [1326] Underfull \hbox (badness 2503) in paragraph at lines 5477--5481 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1327] Underfull \hbox (badness 1168) in paragraph at lines 5538--5543 []\T1/ptm/m/n/10 For Spear-man's test, p-values are com-puted us-ing al-go-rith m AS 89 for $\OML/cmm/m/it/10 n < \OT1/cmr/m/n/10 1290$ \T1/ptm/m/n/10 and [1328] [1329] [1330] [1331] [1332] [1333] [1334] Underfull \hbox (badness 8132) in paragraph at lines 5981--5986 \T1/ptm/m/n/10 then \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is a den-dro-gram of the sa me graph struc-ture as \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and for each node, [1335] [1336] [1337] [1338] [1339] Underfull \hbox (badness 7081) in paragraph at lines 6236--6239 []\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 10000) in paragraph at lines 6240--6242 []\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also [1340] Underfull \vbox (badness 10000) has occurred while \output is active [1341] [1342] [1343] [1344] [1345] [1346] [1347] [1348] [1349] [1350] [1351] Underfull \hbox (badness 10000) in paragraph at lines 7040--7043 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T 1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the [1352] [1353] Underfull \hbox (badness 10000) in paragraph at lines 7177--7180 []\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/zi4/m/n/10 ht tp : / / cran . r-[]project . org / web / views / [1354] [1355] [1356] [1357] Underfull \vbox (badness 3803) has occurred while \output is active [1358] [1359] [1360] [1361] [1362] [1363] [1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] [1377] Underfull \hbox (badness 2626) in paragraph at lines 8629--8632 []\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1378] Underfull \hbox (badness 2503) in paragraph at lines 8729--8733 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1379] [1380] [1381] [1382] [1383] [1384] Overfull \hbox (6.88992pt too wide) in paragraph at lines 9063--9065 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Fligner-Killeen test of homogeneity of variances"\T1/ptm/m/n/10 . [1385] [1386] [1387] [1388] [1389] [1390] [1391] [1392] [1393] [1394] Underfull \hbox (badness 1019) in paragraph at lines 9729--9732 []\T1/ptm/m/n/10 See also [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Incomplete _ gamma _ function$[][]\T1/ptm/m/n/10 , or [][]$\T1/zi4/m/n/ 10 http : / / dlmf . [1395] [1396] [1397] [1398] Underfull \hbox (badness 4518) in paragraph at lines 9990--9995 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1399] [1400] [1401] [1402] [1403] Underfull \hbox (badness 2142) in paragraph at lines 10333--10336 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ Underfull \hbox (badness 1253) in paragraph at lines 10352--10355 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][ ]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it- er-a-tion. Hence, [1404] Underfull \hbox (badness 1708) in paragraph at lines 10414--10417 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1405] [1406] [1407] [1408] [1409] Underfull \hbox (badness 1694) in paragraph at lines 10762--10765 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1410] Underfull \hbox (badness 1867) in paragraph at lines 10781--10790 \T1/ptm/m/n/10 in the row case. If ei-ther is miss-ing, as by de-fault, then th e or-der-ing of the cor-re- [1411] [1412] [1413] [1414] [1415] [1416] [1417]pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.hat}) has been already used, duplicate i gnored \relax l.11228 \aliasA{hat}{influence.measures}{hat} [1418] [1419] Underfull \hbox (badness 1484) in paragraph at lines 11352--11354 []\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1420] [1421] [1422] [1423] [1424] [1425] [1426] [1427] [1428] Underfull \hbox (badness 4441) in paragraph at lines 11899--11901 []\T1/ptm/m/n/10 vector of dif-fer-enc-ing co-ef-fi-cients, so an ARMA model is fit-ted to [1429] [1430] [1431] [1432] [1433] Underfull \hbox (badness 2894) in paragraph at lines 12196--12200 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1434] [1435] [1436] [1437] [1438] [1439] [1440] [1441] [1442] [1443] [1444] Underfull \hbox (badness 4518) in paragraph at lines 12877--12882 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1445] [1446] [1447] [1448] [1449] [1450] [1451] [1452] [1453] [1454] Underfull \hbox (badness 4518) in paragraph at lines 13495--13500 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1455] [1456] [1457] [1458] [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] [1473] Underfull \hbox (badness 2503) in paragraph at lines 14694--14698 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1474] [1475] Underfull \vbox (badness 3803) has occurred while \output is active [1476] [1477] [1478] [1479] [1480] [1481] [1482] Underfull \hbox (badness 1418) in paragraph at lines 15203--15209 []\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response \T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(, "offset") \T1 /ptm/m/n/10 and [1483] [1484] [1485] [1486] [1487] [1488] [1489] [1490] [1491] [1492] [1493] [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504] [1505] Underfull \vbox (badness 3803) has occurred while \output is active [1506] [1507] [1508] Underfull \hbox (badness 2359) in paragraph at lines 16828--16830 []\T1/ptm/m/n/10 Douglas M. Bates and Saikat De-bRoy: David M. Gay for the For- tran code used by [1509] Underfull \vbox (badness 10000) has occurred while \output is active [1510] Underfull \vbox (badness 10000) has occurred while \output is active [1511] [1512] [1513] [1514] [1515] [1516] [1517] [1518] [1519] [1520] [1521] [1522] [1523] Underfull \hbox (badness 1377) in paragraph at lines 17734--17739 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 17739--17742 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 1184) in paragraph at lines 17752--17756 \T1/ptm/m/n/10 value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + reltol ) \T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 17760--17764 []\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \ T1/ptm/m/n/10 meth-ods if [1524] [1525] [1526] Underfull \vbox (badness 10000) has occurred while \output is active [1527] [1528] [1529] [1530] [1531] [1532] [1533] Underfull \hbox (badness 1337) in paragraph at lines 18376--18379 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1534] [1535] [1536] [1537] [1538] [1539] [1540] [1541] [1542] [1543] [1544] [1545] [1546] Underfull \hbox (badness 5563) in paragraph at lines 19103--19105 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , add to al-read y ex-ist-ing plot. Only valid for Underfull \hbox (badness 1194) in paragraph at lines 19106--19109 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1547] [1548] [1549] [1550] [1551] [1552] Underfull \hbox (badness 2503) in paragraph at lines 19478--19481 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1553] Underfull \hbox (badness 10000) in paragraph at lines 19505--19507 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1 /ptm/m/n/10 or [1554] [1555] [1556] [1557] [1558] [1559] [1560] [1561] [1562] [1563] [1564] [1565] [1566] [1567] [1568] Underfull \hbox (badness 10000) in paragraph at lines 20475--20481 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][ ][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 , [1569] [1570] [1571] [1572] [1573] [1574] [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] [1586] [1587] [1588] [1589] [1590] [1591] Underfull \hbox (badness 1337) in paragraph at lines 21781--21787 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1592] [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601] [1602] [1603] Underfull \hbox (badness 10000) in paragraph at lines 22574--22577 []\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by [1604] [1605] [1606] [1607] [1608] [1609] [1610] [1611] [1612] [1613] Underfull \hbox (badness 10000) in paragraph at lines 23150--23153 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run med(x, k) \T1/ptm/m/n/10 sim-ply has Underfull \hbox (badness 3690) in paragraph at lines 23201--23205 [][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's end point rule and is called by de-fault from [1614] [1615] [1616] [1617] [1618] Underfull \hbox (badness 7667) in paragraph at lines 23467--23469 []\T1/ptm/m/n/10 a nu-meric vec-tor or an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-je ct which is co-ercible to one by [1619] [1620] [1621] [1622] Underfull \hbox (badness 3439) in paragraph at lines 23676--23682 [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSasympO rig[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSbiexp[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 SSfol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSfpl[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 SSgompertz[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 SSlogis[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSmicmen[][][]\T1/ptm/m/n/1 0 , [1623] [1624] [1625] [1626] [1627] [1628] [1629] [1630] [1631] [1632] [1633] [1634] [1635] [1636] [1637] [1638] [1639] [1640] [1641] [1642] [1643] [1644] [1645] Underfull \vbox (badness 10000) has occurred while \output is active [1646] Underfull \hbox (badness 3514) in paragraph at lines 25217--25222 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1647] Underfull \hbox (badness 3514) in paragraph at lines 25279--25284 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1648] Underfull \hbox (badness 3514) in paragraph at lines 25336--25341 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1649] Underfull \hbox (badness 3514) in paragraph at lines 25397--25403 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1650] [1651] [1652] [1653] Underfull \hbox (badness 3514) in paragraph at lines 25592--25597 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion Underfull \hbox (badness 3514) in paragraph at lines 25648--25653 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1654] Underfull \hbox (badness 3514) in paragraph at lines 25705--25710 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1655] Underfull \hbox (badness 3514) in paragraph at lines 25760--25765 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1656] [1657] Underfull \hbox (badness 6691) in paragraph at lines 25829--25834 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p tm/m/n/10 . It is the value of the ex-pres-sion [1658] [1659] [1660] [1661] [1662] [1663] [1664] [1665] Underfull \hbox (badness 10000) in paragraph at lines 26342--26345 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex- Underfull \hbox (badness 10000) in paragraph at lines 26342--26345 \T1/ptm/m/n/10 trac-tion, which should be odd. If \T1/zi4/m/n/10 NULL\T1/ptm/m/ n/10 , the de-fault, [1666] [1667] [1668] [1669] [1670] [1671] [1672] [1673] [1674] [1675] Underfull \hbox (badness 5431) in paragraph at lines 26948--26950 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1676] [1677] [1678] [1679] Underfull \hbox (badness 5431) in paragraph at lines 27158--27161 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1680] [1681] [1682] [1683] [1684] Underfull \hbox (badness 1337) in paragraph at lines 27469--27473 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1685] [1686] Underfull \hbox (badness 10000) in paragraph at lines 27586--27589 []\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/ 10 ; cur-rently ex-cept for \T1/zi4/m/n/10 rt()\T1/ptm/m/n/10 , only for [1687] [1688] [1689] Underfull \hbox (badness 1616) in paragraph at lines 27769--27772 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1690] [1691] [1692] [1693] [1694] [1695] [1696] [1697] [1698] [1699] [1700] [1701] [1702] [1703] [1704] [1705] [1706] [1707] [1708] [1709] [1710] [1711] [1712] Underfull \hbox (badness 1337) in paragraph at lines 29169--29173 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1713] [1714] [1715] [1716] [1717] [1718] [1719] [1720] Underfull \hbox (badness 1337) in paragraph at lines 29653--29657 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1721] Underfull \hbox (badness 5161) in paragraph at lines 29746--29748 []\T1/ptm/m/n/10 an es-ti-mate of the lo-ca-tion pa-ram-e-ter. (Only present if ar-gu-ment [1722] [1723] [1724] [1725] [1726] [1727] Underfull \hbox (badness 10000) in paragraph at lines 30110--30115 []\T1/ptm/m/n/10 There is a \T1/zi4/m/n/10 summary \T1/ptm/m/n/10 method for co n-tin-gency ta-ble ob-jects cre-ated by \T1/zi4/m/n/10 table \T1/ptm/m/n/10 or [1728] [1729] [1730]) (./stats4-pkg.tex Chapter 11. [1731] [1732] [1733] [1734] [1735] [1736]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup licate ignored \relax l.407 ...Package \pkg{stats4}}{show.Rdash.methods} [1737] [1738] [1739] [1740]) (./tcltk-pkg.tex Chapter 12. [1741] [1742] [1743] [1744] [1745] [1746] [1747] Underfull \vbox (badness 10000) has occurred while \output is active [1748] Underfull \vbox (badness 10000) has occurred while \output is active [1749] Underfull \hbox (badness 1546) in paragraph at lines 649--656 []\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing any Tk or Tcl com-mand by sim-ply run-ning [1750] [1751] [1752] [1753] Underfull \vbox (badness 10000) has occurred while \output is active [1754] [1755] [1756] [1757] [1758] [1759] [1760] Underfull \hbox (badness 3375) in paragraph at lines 1390--1393 [][][]\T1/zi4/m/n/10 select.list[][][] \T1/ptm/m/n/10 (a text ver-sion ex-cept on Win-dows and the OS X GUI), [][]\T1/zi4/m/n/10 menu[][][] \T1/ptm/m/n/10 (wh ose [1761]) (./tools-pkg.tex [1762] Chapter 13. [1763] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1764] Underfull \hbox (badness 3039) in paragraph at lines 164--167 []\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1765] [1766] Underfull \hbox (badness 1308) in paragraph at lines 285--298 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 285--298 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 formatMastersthesis\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm /m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma tTechreport \T1/ptm/m/n/10 and [1767] [1768] [1769] Underfull \hbox (badness 2080) in paragraph at lines 449--454 \T1/ptm/m/n/10 ac-ters. It is sorted by Uni-code point and within a point al-ph a-bet-i-cally on the glyph Underfull \hbox (badness 2644) in paragraph at lines 449--454 \T1/ptm/m/n/10 (there can be more than one name for a Uni-code point). The data are in the file [1770] [1771] [1772] [1773] [1774] Overfull \vbox (3.73149pt too high) has occurred while \output is active [1775] [1776] [1777] [1778] Underfull \hbox (badness 1635) in paragraph at lines 962--964 []\T1/ptm/m/n/10 Delete files in the tem-po-rary di-rec-tory? This op-tion is i g-nored when [1779] Underfull \hbox (badness 4441) in paragraph at lines 1036--1044 \T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe n-den-cies (de- Underfull \hbox (badness 1014) in paragraph at lines 1056--1058 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies [1780] Underfull \hbox (badness 10000) in paragraph at lines 1079--1082 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1079--1082 \T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 , [1781] [1782] Underfull \hbox (badness 10000) in paragraph at lines 1207--1209 []\T1/ptm/m/n/10 Re-save PDF files (es-pe-cially vi-gnettes) more com-pactly. S up-port func-tion for [1783] [1784] Underfull \hbox (badness 7981) in paragraph at lines 1378--1382 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1785] Underfull \hbox (badness 1082) in paragraph at lines 1384--1386 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see [1786] [1787] [1788] [1789] Underfull \hbox (badness 5726) in paragraph at lines 1651--1656 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/n/10 De pendsList \T1/ptm/m/n/10 ob-ject Underfull \hbox (badness 7221) in paragraph at lines 1651--1656 \T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo r in-stance if there was [1790] [1791] [1792] [1793] [1794] [1795] [1796] Underfull \hbox (badness 7981) in paragraph at lines 2025--2031 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1797] [1798] [1799] [1800] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/n' instead on input line 2279. [1801] [1802] [1803] Underfull \hbox (badness 1424) in paragraph at lines 2516--2518 []\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t or of links, as re-turned by [1804] [1805] [1806] [1807] [1808] [1809] [1810] [1811] [1812] Underfull \hbox (badness 1675) in paragraph at lines 3035--3037 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing how the news en-tries shoul d be \T1/ptm/m/it/10 chopped\T1/ptm/m/n/10 ; [1813] [1814] [1815] [1816] [1817] [1818] [1819] [1820] [1821] Underfull \hbox (badness 1838) in paragraph at lines 3587--3593 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 3587--3593 \T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [1822] [1823] Underfull \hbox (badness 5726) in paragraph at lines 3667--3672 []\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/sl/10 TR UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/sl/10 DependsList \T1/ptm/m/n/10 ob-ject Underfull \hbox (badness 7221) in paragraph at lines 3667--3672 \T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo r in-stance if there was [1824] [1825] Underfull \hbox (badness 1688) in paragraph at lines 3805--3817 []\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to be used in the `\T 1/zi4/m/sl/10 PACKAGES\T1/ptm/m/n/10 ' and [1826] [1827] [1828] [1829]) (./utils-pkg.tex [1830] Chapter 14. [1831] Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ', [1832] [1833] Underfull \hbox (badness 1454) in paragraph at lines 197--200 []\T1/ptm/m/n/10 logical in-di-cat-ing if the search should be case-insensitive , \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 by de- Underfull \hbox (badness 1540) in paragraph at lines 213--216 []\T1/zi4/m/sl/10 find \T1/ptm/m/n/10 is a dif-fer-ent user in-ter-face for the same task as \T1/zi4/m/sl/10 apropos\T1/ptm/m/n/10 . How-ever, by de-fault [1834] [1835] [1836] [1837] [1838] [1839] Underfull \hbox (badness 10000) in paragraph at lines 538--544 []\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1 0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 538--544 \T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the [1840] Underfull \hbox (badness 5847) in paragraph at lines 649--655 []\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to se-lect which of the pack-ages on the repos-i-to- Underfull \hbox (badness 4229) in paragraph at lines 649--655 \T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi 4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as [1841] Underfull \hbox (badness 3861) in paragraph at lines 714--719 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/ 10 "License_is_FOSS"\T1/ptm/m/n/10 , [1842] [1843] [1844] [1845] [1846] [1847] [1848] [1849] [1850] Underfull \hbox (badness 1371) in paragraph at lines 1290--1292 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [1851] [1852] [1853] [1854] Underfull \hbox (badness 2057) in paragraph at lines 1562--1564 []\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th is func-tion is in-voked for its side ef-fect of up-dat-ing [1855] [1856] [1857] Underfull \hbox (badness 5189) in paragraph at lines 1747--1749 []\T1/ptm/m/n/10 A list of keys that have been pre-vi-ously cited, to be used w hen [1858] [1859] [1860] [1861] Underfull \hbox (badness 1661) in paragraph at lines 1962--1969 []\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sim-pli-fied to an [][]\T1/zi4/m/sl/10 array[][][] \T1/ptm/m/n/10 (typ-i- Underfull \hbox (badness 1990) in paragraph at lines 1974--1977 []\T1/ptm/m/n/10 a [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4 /m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m /n/10 ar-gu-ment above. In the lat-ter case, the iden-tity [1862] [1863] [1864] [1865] [1866] [1867] [1868] [1869] [1870] [1871] [1872] [1873] [1874] [1875] [1876] Underfull \hbox (badness 1430) in paragraph at lines 2953--2959 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the \T1/zi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the Underfull \hbox (badness 2837) in paragraph at lines 2953--2959 \T1/zi4/m/sl/10 internet.info \T1/ptm/m/n/10 op-tion. The de-tails de-pend on t he plat-form and scheme, but set-ting [1877] Underfull \hbox (badness 1231) in paragraph at lines 2997--3003 []\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers via en-vi-ron-ment vari-able [1878] [1879] [1880] [1881] [1882] [1883] [1884] [1885] [1886] [1887] [1888] [1889]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.for mat}) has been already used, duplicate ignored \relax l.3763 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.format.1}) has been already used, dupl icate ignored \relax l.3763 ...mat Unordered and Ordered Lists}{format} [1890] [1891] [1892] [1893] [1894] [1895] [1896] [1897] [1898] [1899] [1900] [1901] [1902] [1903] [1904] Underfull \hbox (badness 1371) in paragraph at lines 4667--4669 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [1905] Underfull \hbox (badness 1502) in paragraph at lines 4756--4761 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 4756--4761 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [1906] [1907] [1908] Underfull \hbox (badness 10000) in paragraph at lines 4920--4929 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, [1909] [1910] Underfull \hbox (badness 3118) in paragraph at lines 5036--5038 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [1911] Underfull \hbox (badness 1082) in paragraph at lines 5118--5124 []\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 repos = NULL\T1/ptm/m/n/10 , a char-ac-ter vec-tor of file paths of `\T1/zi4/m/sl/10 .tar.gz\T1/ptm/m/n/10 ' files. [1912] Underfull \hbox (badness 1348) in paragraph at lines 5164--5169 []\T1/ptm/m/n/10 logical in-di-cat-ing to also in-stall unin-stalled pack-ages which these pack- Underfull \hbox (badness 3884) in paragraph at lines 5164--5169 \T1/ptm/m/n/10 ages de-pend on/link to/import/suggest (and so on re-cur-sively) . Not Underfull \hbox (badness 1466) in paragraph at lines 5164--5169 \T1/ptm/m/n/10 used if \T1/zi4/m/sl/10 repos = NULL\T1/ptm/m/n/10 . Can also be a char-ac-ter vec-tor, a sub-set of Underfull \hbox (badness 10000) in paragraph at lines 5219--5222 []\T1/ptm/m/n/10 (not used on Win-dows) anal-o-gous to \T1/zi4/m/sl/10 configur e.args \T1/ptm/m/n/10 for flag [1913] Underfull \hbox (badness 10000) in paragraph at lines 5245--5248 []\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to be passed Underfull \hbox (badness 10000) in paragraph at lines 5245--5248 \T1/ptm/m/n/10 to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a source pac k-age in-stall. E.g., [1914] Underfull \hbox (badness 10000) in paragraph at lines 5375--5380 [][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/ 10 , [1915] [1916] [1917] [1918] [1919] [1920] [1921] [1922] [1923] [1924] [1925] [1926] [1927] [1928] [1929] [1930] [1931] [1932] [1933] Underfull \hbox (badness 10000) in paragraph at lines 6529--6531 []\T1/zi4/m/sl/10 packageVersion() \T1/ptm/m/n/10 is a con-ve-nience short-cut, al-low-ing things like Underfull \hbox (badness 2310) in paragraph at lines 6534--6539 []\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [1934] [1935] [1936] Underfull \hbox (badness 10000) in paragraph at lines 6691--6694 []\T1/ptm/m/n/10 a data frame with columns as the \T1/ptm/m/it/10 ma-trix \T1/p tm/m/n/10 re-turned by Underfull \hbox (badness 10000) in paragraph at lines 6691--6694 [][]\T1/zi4/m/sl/10 available.packages[][][] \T1/ptm/m/n/10 plus \T1/zi4/m/sl/1 0 "Status"\T1/ptm/m/n/10 , a fac-tor with lev-els [1937] [1938] [1939] [1940] [1941] [1942] Underfull \hbox (badness 1789) in paragraph at lines 7072--7074 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [1943] [1944] [1945] [1946] [1947] [1948] [1949] [1950] [1951] [1952] [1953] [1954] Underfull \hbox (badness 1097) in paragraph at lines 7871--7874 []\T1/ptm/m/n/10 The name \T1/zi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b e used on Win-dows, in which case [1955] [1956] Underfull \hbox (badness 3000) in paragraph at lines 7999--8004 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 read.t able[][][]\T1/ptm/m/n/10 ; [1957] [1958] [1959] [1960] [1961] [1962] [1963] [1964] Underfull \hbox (badness 2134) in paragraph at lines 8561--8566 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 write. table[][][]\T1/ptm/m/n/10 ; [1965] [1966] [1967] [1968] [1969] [1970] [1971] [1972] [1973] [1974] [1975] [1976] [1977] [1978] [1979] [1980] Underfull \hbox (badness 10000) in paragraph at lines 9504--9506 [][][]$\T1/zi4/m/sl/10 http : / / en . wikipedia . org / wiki / Ctags$[][]\T1/p tm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / www . gnu . org / software / emacs / [1981] [1982] Underfull \hbox (badness 10000) in paragraph at lines 9682--9686 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n ow taken from the en-vi-ron-ment vari-able [1983] Underfull \hbox (badness 10000) in paragraph at lines 9713--9719 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a [1984] Underfull \hbox (badness 2096) in paragraph at lines 9827--9830 []\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing whether PNG fig-ures should be gen-er-ated. Ig-nored if Underfull \hbox (badness 1527) in paragraph at lines 9831--9834 []\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing whether JPEG fig-ures should be gen-er-ated. Ig-nored if [1985] Underfull \hbox (badness 1009) in paragraph at lines 9898--9909 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If [1986] [1987] [1988] [1989] [1990] Underfull \hbox (badness 2635) in paragraph at lines 10204--10207 []\T1/ptm/m/n/10 Repository `\T1/zi4/m/sl/10 CRAN\T1/ptm/m/n/10 ' is treated sp e-cially: the value is taken from the cur-rent set-ting of [1991] [1992] [1993] [1994] [1995] [1996] Underfull \hbox (badness 5970) in paragraph at lines 10572--10575 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive Underfull \hbox (badness 3449) in paragraph at lines 10583--10592 []\T1/ptm/m/n/10 string in-di-cat-ing if the \T1/zi4/m/sl/10 width \T1/ptm/m/n/ 10 ar-gu-ment's spec-i-fi-ca-tion should be fol- Underfull \hbox (badness 2512) in paragraph at lines 10583--10592 \T1/ptm/m/n/10 lowed strictly, one of the val-ues \T1/zi4/m/sl/10 c("no", "cut" , "wrap")\T1/ptm/m/n/10 . De- Underfull \hbox (badness 1824) in paragraph at lines 10583--10592 \T1/ptm/m/n/10 faults to the \T1/zi4/m/sl/10 strict.width \T1/ptm/m/n/10 com-po -nent of op-tion \T1/zi4/m/sl/10 "str" \T1/ptm/m/n/10 (see [][]\T1/zi4/m/sl/10 options[][][]\T1/ptm/m/n/10 ) Underfull \hbox (badness 3769) in paragraph at lines 10583--10592 \T1/ptm/m/n/10 which de-faults to \T1/zi4/m/sl/10 "no" \T1/ptm/m/n/10 for back com-pat-i-bil-ity rea-sons; \T1/zi4/m/sl/10 "wrap" \T1/ptm/m/n/10 uses [1997] [1998] [1999] Underfull \hbox (badness 10000) in paragraph at lines 10751--10753 []\T1/ptm/m/n/10 Options other than \T1/zi4/m/sl/10 memory = "none" \T1/ptm/m/n /10 ap-ply only to files pro-duced by [2000] [2001] [2002] [2003] [2004] [2005] Underfull \hbox (badness 10000) in paragraph at lines 11146--11149 [][][]$\T1/zi4/m/sl/10 http : / / en . wikipedia . org / wiki / Tar _ (file _ f ormat)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / pubs . opengroup . org / Underfull \hbox (badness 2245) in paragraph at lines 11146--11149 \T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9 2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX [2006] [2007] [2008] [2009] [2010] [2011] [2012] [2013] Underfull \hbox (badness 10000) in paragraph at lines 11651--11653 []\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/sl/10 destdir \T1/ptm/m/n/10 and \ T1/zi4/m/sl/10 dependencies \T1/ptm/m/n/10 to be passed to [2014] Underfull \hbox (badness 1052) in paragraph at lines 11654--11656 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. See Underfull \hbox (badness 10000) in paragraph at lines 11684--11689 []\T1/ptm/m/n/10 For how the list of suit-able avail-able pack-ages is de-ter-m ined see Underfull \hbox (badness 10000) in paragraph at lines 11684--11689 [][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 . \T1/zi4/m/sl/10 av ailable = NULL \T1/ptm/m/n/10 make a call to Underfull \hbox (badness 10000) in paragraph at lines 11713--11716 [][][]\T1/zi4/m/sl/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.package s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n /10 , [2015] [2016] [2017] [2018] [2019] [2020] Underfull \hbox (badness 1454) in paragraph at lines 12019--12023 []\T1/ptm/m/n/10 the char-ac-ter(s) to print at the end of each line (row). For ex-am-ple, [2021] Underfull \hbox (badness 10000) in paragraph at lines 12089--12091 []\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec- tion e.g. [2022] [2023] [2024]) No file fullrefman.ind. (./fullrefman.aux) Package rerunfilecheck Warning: File `fullrefman.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Font Warning: Some font shapes were not available, defaults substituted. ) (see the transcript file for additional information)pdfTeX warning (dest): name {Rfn.write.matrix} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.dgTMatrix} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.sparseMatrix} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.glht} has been referenced but does not exist, r eplaced by a fixed one pdfTeX warning (dest): name{Rfn.survreg} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.coxph} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.stepAIC} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.rinvGauss} has been referenced but does not exi st, replaced by a fixed one pdfTeX 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Transcript written on fullrefman.log. This is makeindex, version 2.15 [TeX Live 2013] (kpathsea + Thai support). Scanning input file fullrefman.idx................done (12448 entries accepted, 33 rejected). Sorting entries.................................................................................................................................done (188586 comparisons). Generating output file fullrefman.ind...............done (12420 lines written, 50 warnings). Output written in fullrefman.ind. Transcript written in fullrefman.ilg. This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013/Debian) restricted \write18 enabled. entering extended mode (./fullrefman.tex LaTeX2e <2011/06/27> Babel <3.9f> and hyphenation patterns for 2 languages loaded. 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Underfull \hbox (badness 4595) in paragraph at lines 40--43 []\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h igh-est, for [1] [2] Underfull \hbox (badness 1960) in paragraph at lines 137--145 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1 /ptm/m/n/10 such that \T1/zi4/m/n/10 1 - x != 1\T1/ptm/m/n/10 . Underfull \hbox (badness 10000) in paragraph at lines 137--145 \T1/ptm/m/n/10 It equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1 /ptm/m/n/10 if Underfull \hbox (badness 10000) in paragraph at lines 137--145 \T1/zi4/m/n/10 double.base \T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.roundin g \T1/ptm/m/n/10 is 0; oth-er-wise, it is Underfull \hbox (badness 1668) in paragraph at lines 148--155 []\T1/ptm/m/n/10 the largest nor-mal-ized floating-point num-ber. Typ-i-cally, it is equal to [3] [4] [5] Underfull \hbox (badness 1178) in paragraph at lines 291--295 []\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/ 10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues [6] Underfull \hbox (badness 3977) in paragraph at lines 372--375 []\T1/ptm/m/n/10 logical: should \T1/zi4/m/n/10 minlength \T1/ptm/m/n/10 be ob- served strictly? Note that set-ting [7] [8] Underfull \hbox (badness 2556) in paragraph at lines 498--504 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ', [9] [10] [11] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [12] [13] [14] [15] [16] [17] Underfull \hbox (badness 2671) in paragraph at lines 1061--1064 []\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec- tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis t of length [18] [19] [20] [21] Underfull \hbox (badness 4072) in paragraph at lines 1270--1276 []\T1/zi4/m/n/10 %% \T1/ptm/m/n/10 in-di-cates \T1/zi4/m/n/10 x mod y \T1/ptm/m /n/10 and \T1/zi4/m/n/10 %/% \T1/ptm/m/n/10 in-di-cates in-te-ger di-vi-sion. I t is guar-an-teed that [22] [23] [24] [25] [26] [27] [28] [29] [30] [31] Underfull \hbox (badness 10000) in paragraph at lines 1953--1955 []\T1/ptm/m/n/10 a date-time ob-ject, or some-thing which can be co-erced by [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] Underfull \vbox (badness 10000) has occurred while \output is active [48] [49] [50] [51] [52] [53] [54] Underfull \hbox (badness 10000) in paragraph at lines 3377--3379 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [55] [56] [57] [58] [59] [60] [61] [62] [63] Underfull \hbox (badness 2970) in paragraph at lines 3955--3961 []\T1/ptm/m/n/10 is there sup-port the [][]\T1/zi4/m/n/10 svg[][][]\T1/ptm/m/n/ 10 , [][]\T1/zi4/m/n/10 cairo_pdf[][][] \T1/ptm/m/n/10 and [][]\T1/zi4/m/n/10 c airo_ps[][][] \T1/ptm/m/n/10 de-vices, and for [64] [65] [66] [67] [68] [69] [70] [71] [72] Underfull \hbox (badness 2521) in paragraph at lines 4511--4513 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] Underfull \hbox (badness 2096) in paragraph at lines 5725--5738 []\T1/ptm/m/n/10 New restarts for \T1/zi4/m/n/10 withRestarts \T1/ptm/m/n/10 ca n be spec-i-fied in sev-eral ways. The sim-plest is in [92] [93] [94] [95] Underfull \hbox (badness 10000) in paragraph at lines 6048--6051 []\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo st gen-eral form (from RFC1738) is [96] [97] [98] Underfull \hbox (badness 3568) in paragraph at lines 6263--6270 \T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as [99] [100] Underfull \vbox (badness 3803) has occurred while \output is active [101] Underfull \vbox (badness 10000) has occurred while \output is active [102] [103] [104] [105] [106] [107] [108] Underfull \hbox (badness 4595) in paragraph at lines 6865--6868 []\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h igh-est, for [109] Underfull \hbox (badness 2351) in paragraph at lines 6922--6925 [][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T 1/ptm/m/n/10 , [110] [111] [112] [113] Underfull \hbox (badness 10000) in paragraph at lines 7167--7178 []\T1/zi4/m/n/10 data.frame \T1/ptm/m/n/10 con-verts each of its ar-gu-ments to a data frame by call-ing [114] Underfull \hbox (badness 4479) in paragraph at lines 7239--7248 [][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[] [][] \T1/ptm/m/n/10 (for the col-umn names), Underfull \hbox (badness 2469) in paragraph at lines 7239--7248 [][]\T1/zi4/m/n/10 [.data.frame[][][] \T1/ptm/m/n/10 for sub-set-ting meth-ods, [][]\T1/zi4/m/n/10 Math.data.frame[][][] \T1/ptm/m/n/10 etc, about \T1/ptm/m/i t/10 Group \T1/ptm/m/n/10 meth-ods for [115] [116] [117] [118] [119] [120] [121] [122] [123] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] Underfull \hbox (badness 1394) in paragraph at lines 8773--8778 []\T1/ptm/m/n/10 Subtraction of date-time ob-jects gives an ob-ject of this cla ss, by call-ing \T1/zi4/m/n/10 difftime \T1/ptm/m/n/10 with [139] [140] [141] [142] [143] [144] [145] Underfull \hbox (badness 10000) in paragraph at lines 9216--9220 [][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / IEEE _ 754-[]198 5$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wi ki / IEEE _ [146] [147] [148] [149] [150] [151] Underfull \hbox (badness 2150) in paragraph at lines 9599--9602 []\T1/ptm/m/n/10 logical in-di-cat-ing if du-pli-ca-tion should be con-sid-ered from the re-verse Underfull \hbox (badness 6396) in paragraph at lines 9613--9621 []\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len t method def-i-ni-tions for Underfull \hbox (badness 2409) in paragraph at lines 9654--9660 []\T1/ptm/m/n/10 Except for fac-tors, log-i-cal and raw vec-tors the de-fault \ T1/zi4/m/n/10 nmax = NA \T1/ptm/m/n/10 is equiv-a-lent to [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] Underfull \hbox (badness 4569) in paragraph at lines 10683--10687 []\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been passed as an ar-gu-ment Underfull \hbox (badness 2401) in paragraph at lines 10683--10687 \T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller' s en-vi-ron-ment, i.e., one needs [167] Underfull \vbox (badness 3803) has occurred while \output is active [168] [169] [170] [171] [172] [173] [174] Underfull \hbox (badness 2698) in paragraph at lines 11227--11236 []\T1/ptm/m/n/10 Both \T1/zi4/m/n/10 $ \T1/ptm/m/n/10 and \T1/zi4/m/n/10 [[ \T1 /ptm/m/n/10 can be ap-plied to en-vi-ron-ments. Only char-ac-ter in-dices are a l-lowed Underfull \hbox (badness 4341) in paragraph at lines 11227--11236 \T1/ptm/m/n/10 and no par-tial match-ing is done. The se-man-tics of these op-e r-a-tions are those of [175] [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188] [189] Underfull \hbox (badness 2253) in paragraph at lines 12174--12176 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [190] Underfull \hbox (badness 1565) in paragraph at lines 12235--12239 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/ 10 , and [191] Underfull \hbox (badness 10000) in paragraph at lines 12278--12280 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m /n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with [192] [193] Underfull \hbox (badness 1466) in paragraph at lines 12409--12412 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/ zi4/m/n/10 file.copy \T1/ptm/m/n/10 and [194] Underfull \hbox (badness 10000) in paragraph at lines 12515--12519 [][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [ ][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 12526--12529 [][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Hard _ link$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / [195] [196] [197] [198] Underfull \hbox (badness 3965) in paragraph at lines 12773--12777 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] Underfull \hbox (badness 4429) in paragraph at lines 13481--13484 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] \T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for [210] Underfull \hbox (badness 10000) in paragraph at lines 13567--13569 []\T1/ptm/m/n/10 If you set \T1/zi4/m/n/10 format \T1/ptm/m/n/10 it over-rides the set-ting of \T1/zi4/m/n/10 mode\T1/ptm/m/n/10 , so Underfull \hbox (badness 10000) in paragraph at lines 13573--13577 []\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b ers on the dec-i-mal point, so [211] [212] Underfull \vbox (badness 3803) has occurred while \output is active [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223] Underfull \hbox (badness 1092) in paragraph at lines 14330--14335 [][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t he DLL has been loaded us-ing [224] [225] [226] [227] Underfull \hbox (badness 6741) in paragraph at lines 14578--14582 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \ T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10 , [228] [229] [230] [231] Underfull \hbox (badness 1867) in paragraph at lines 14876--14883 []\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][] [] (or char-ac-ter string for [232] [233] [234] [235] Underfull \vbox (badness 10000) has occurred while \output is active [236] [237] Underfull \hbox (badness 3679) in paragraph at lines 15240--15242 []\T1/ptm/m/n/10 The TRE li-brary of Ville Lau-rikari ([][]$\T1/zi4/m/n/10 http : / / laurikari . net / tre/$[][]\T1/ptm/m/n/10 ) is used ex-cept for [238] [239] [240] [241] [242] [243] Underfull \hbox (badness 1478) in paragraph at lines 15708--15711 []\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [244] [245] [246] [247] [248] [249] [250] [251] [252] [253] [254] Underfull \hbox (badness 1442) in paragraph at lines 16391--16393 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see [255] Underfull \hbox (badness 2452) in paragraph at lines 16483--16499 [][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 , [256] [257] [258] [259] [260] [261] [262] [263] [264] [265] [266] Underfull \hbox (badness 4739) in paragraph at lines 17130--17132 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [267] [268] [269] [270] [271] [272] [273] [274] [275] [276] [277] [278] [279] [280] Underfull \hbox (badness 10000) in paragraph at lines 18012--18016 []\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory Underfull \hbox (badness 2460) in paragraph at lines 18012--18016 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/ 10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T 1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10 ' [281] [282] Underfull \hbox (badness 1014) in paragraph at lines 18165--18170 []\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1 0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if [283] [284] [285] [286] [287] [288] [289] [290] [291] [292] [293] Underfull \hbox (badness 1264) in paragraph at lines 18872--18877 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [294] [295] [296] [297] [298] [299] [300] [301] [302] [303] [304] [305] Underfull \hbox (badness 10000) in paragraph at lines 19606--19608 []\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n /10 has the prop-erty that [306] [307] [308] [309] [310] [311] [312] [313] [314] [315] [316] [317] [318] [319] [320] [321] Underfull \hbox (badness 1655) in paragraph at lines 20594--20600 [][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Data _ compressi on$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-sion, [322] [323] Underfull \hbox (badness 1484) in paragraph at lines 20755--20763 []\T1/ptm/m/n/10 The address-space limit is 2Gb un-der 32-bit Win-dows un-less the OS's de-fault has been [324] [325] [326] [327] [328] Underfull \hbox (badness 2790) in paragraph at lines 21022--21025 []\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s ages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 21022--21025 \T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m es-sages, so can be sup-pressed by [329] [330] [331] [332] [333] [334] Underfull \hbox (badness 10000) in paragraph at lines 21461--21464 []\T1/ptm/m/n/10 It is pos-si-ble to up-date just part of the names at-tribute via the gen-eral rules: Underfull \hbox (badness 10000) in paragraph at lines 21461--21464 \T1/ptm/m/n/10 see the ex-am-ples. This works be-cause the ex-pres-sion there i s eval-u-ated as [335] [336] [337] [338] [339] [340] [341] [342] [343] [344] [345] [346] [347] [348] [349] [350] [351] Underfull \hbox (badness 1199) in paragraph at lines 22508--22514 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 is.numeric \T1/ptm/m/n/ 10 re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 if its ar-gu-ment is of [][]mode [][][] \T1/zi4/m/n/10 "numeric" Underfull \hbox (badness 2027) in paragraph at lines 22508--22514 \T1/ptm/m/n/10 ([][]type[][][] \T1/zi4/m/n/10 "double" \T1/ptm/m/n/10 or type \ T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 ) and not a fac-tor, and \T1/zi4/m/n/10 F ALSE \T1/ptm/m/n/10 oth-er-wise. That is, [352] [353] [354] [355] [356] [357] [358] [359] Underfull \hbox (badness 1038) in paragraph at lines 23037--23046 []\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/ 10 R \T1/ptm/m/n/10 starts up. Ini-tially Underfull \hbox (badness 1881) in paragraph at lines 23047--23050 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 23066--23068 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [360] Underfull \hbox (badness 10000) in paragraph at lines 23130--23139 []\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/zi4/m /n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to Underfull \hbox (badness 2600) in paragraph at lines 23130--23139 \T1/ptm/m/n/10 `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /bin/pager\T1/pt m/m/n/10 ', which se-lects a pager via the \T1/zi4/m/n/10 PAGER \T1/ptm/m/n/10 en-vi-ron-ment vari-able Underfull \hbox (badness 2142) in paragraph at lines 23140--23146 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able Underfull \hbox (badness 1968) in paragraph at lines 23153--23158 []\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 23163--23172 []\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v alue [361] [362] [363] Underfull \hbox (badness 10000) in paragraph at lines 23404--23410 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/ n/10 setRepositories[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 23404--23410 \T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "http://www.bioconductor.org"\ T1/ptm/m/n/10 ' or the Eu-ro-pean mir- Underfull \hbox (badness 10000) in paragraph at lines 23404--23410 \T1/ptm/m/n/10 ror `\T1/zi4/m/n/10 "http://bioconductor.statistik.tu-dortmund.d e"\T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 10000) in paragraph at lines 23416--23419 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][ ][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10 and Underfull \hbox (badness 2689) in paragraph at lines 23441--23443 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see [364] Underfull \hbox (badness 7203) in paragraph at lines 23469--23472 []\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/ n/10 and Underfull \hbox (badness 3128) in paragraph at lines 23479--23485 \T1/ptm/m/n/10 Pos-si-ble val-ues are \T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (t he de-fault ex-cept un-der the CRAN OS X build) Underfull \hbox (badness 1881) in paragraph at lines 23479--23485 \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "mac.binary."\T1/ptm/m/n/10 . Win-dows uses \ T1/zi4/m/n/10 "win.binary"\T1/ptm/m/n/10 . (\T1/zi4/m/n/10 "mac.binary.leopard" \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 23487--23494 []\T1/ptm/m/n/10 URLs of the repos-i-to-ries for use by [][]\T1/zi4/m/n/10 upda te.packages[][][]\T1/ptm/m/n/10 . De-faults to Underfull \hbox (badness 10000) in paragraph at lines 23487--23494 \T1/zi4/m/n/10 c(CRAN="@CRAN@")\T1/ptm/m/n/10 , a value that causes some util-i -ties to prompt for a Underfull \hbox (badness 6380) in paragraph at lines 23487--23494 \T1/ptm/m/n/10 CRAN mir-ror. To avoid this do set the CRAN mir-ror, by some-thi ng like Underfull \hbox (badness 1082) in paragraph at lines 23487--23494 \T1/zi4/m/n/10 local({r <- getOption("repos"); r["CRAN"] <- "http://my.local.cr an"; [365] [366] [367] [368] Underfull \vbox (badness 3803) has occurred while \output is active [369] Underfull \hbox (badness 10000) in paragraph at lines 23795--23799 []\T1/ptm/m/n/10 The outer prod-uct of the ar-rays \T1/zi4/m/n/10 X \T1/ptm/m/n /10 and \T1/zi4/m/n/10 Y \T1/ptm/m/n/10 is the ar-ray \T1/zi4/m/n/10 A \T1/ptm/ m/n/10 with di-men-sion Underfull \hbox (badness 10000) in paragraph at lines 23795--23799 \T1/zi4/m/n/10 c(dim(X), dim(Y)) \T1/ptm/m/n/10 where el-e-ment \T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] [370] [371] [372] [373] [374] Underfull \hbox (badness 1748) in paragraph at lines 24116--24120 \T1/ptm/m/n/10 seem un-de-sir-able, e.g., when past-ing two char-ac-ter vec-tor s, or very de-sir-able, e.g. in [375] [376] [377] [378] [379] [380] [381] [382] Underfull \hbox (badness 2726) in paragraph at lines 24615--24618 []\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di -cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put, see [383] [384] [385] [386] [387] [388] [389] [390] [391] [392] [393] [394] [395] Underfull \hbox (badness 1052) in paragraph at lines 25420--25425 []\T1/zi4/m/n/10 qr.X \T1/ptm/m/n/10 re-turns $\OML/cmm/b/it/10 X$\T1/ptm/m/n/1 0 , the orig-i-nal ma-trix from which the qr ob-ject was con-structed, pro-vide d [396] [397] [398] [399] [400] [401] [402] [403] [404] [405] Underfull \hbox (badness 1533) in paragraph at lines 26125--26128 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [406] [407] [408] [409] [410] [411] [412] [413] [414] [415] [416] [417] [418] [419] [420] [421] [422] [423] [424] [425] [426] [427] [428] [429] [430] [431] Underfull \hbox (badness 10000) in paragraph at lines 27753--27757 []\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n /10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 27753--27757 \T1/zi4/m/n/10 "(?[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t he matches are also re-turned by name. Underfull \hbox (badness 6188) in paragraph at lines 27776--27778 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p ubs . opengroup . org / onlinepubs / 9699919799 / [432] [433] [434] [435] [436] [437] [438] [439] [440] [441] [442] [443] [444] [445] [446] [447] [448] [449] [450] Underfull \hbox (badness 10000) in paragraph at lines 28975--28978 []\T1/zi4/m/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my c ur-rent workspace', i.e., [451] [452] [453] [454] Underfull \hbox (badness 2302) in paragraph at lines 29175--29182 []\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d e-fined as $[]$, Underfull \hbox (badness 2837) in paragraph at lines 29175--29182 \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non -missing Underfull \hbox (badness 2980) in paragraph at lines 29175--29182 \T1/ptm/m/n/10 val-ues. In the case \T1/zi4/m/n/10 center = TRUE\T1/ptm/m/n/10 , this is the same as the stan-dard de-vi-a-tion, Underfull \hbox (badness 2181) in paragraph at lines 29175--29182 \T1/ptm/m/n/10 but in gen-eral it is not. (To scale by the stan-dard de-vi-a-ti ons with-out cen-ter-ing, use [455] [456] Underfull \hbox (badness 2261) in paragraph at lines 29328--29333 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i t ap-plies to all fields; oth-er-wise, if Underfull \hbox (badness 10000) in paragraph at lines 29355--29361 []\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac- ters [457] Underfull \hbox (badness 10000) in paragraph at lines 29428--29433 []\T1/ptm/m/n/10 Note that since \T1/zi4/m/n/10 sep \T1/ptm/m/n/10 is a sep-a-r a-tor and not a ter-mi-na-tor, read-ing a file by [458] [459] [460] [461] [462] [463] [464] [465] [466] [467] [468] [469] [470] [471] [472] [473] [474] [475] [476] [477] [478] [479] [480] [481] [482] [483] [484] [485] [486] [487] [488] [489] [490] [491] [492] [493] [494] [495] [496] [497] [498] [499] [500] Underfull \hbox (badness 1072) in paragraph at lines 32177--32181 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 32182--32186 []\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/ 10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 - -no-init-file\T1/ptm/m/n/10 ', Underfull \hbox (badness 10000) in paragraph at lines 32210--32216 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 32210--32216 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, e.g. Underfull \hbox (badness 3343) in paragraph at lines 32223--32230 \T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 32223--32230 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 32223--32230 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [501] [502] [503] [504] [505] Underfull \hbox (badness 10000) in paragraph at lines 32513--32519 []\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form at \T1/ptm/m/n/10 meth-ods is [506] [507] [508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] [519] [520] [521] [522] [523] [524] [525] [526] [527] [528] Underfull \vbox (badness 10000) has occurred while \output is active [529] [530] Underfull \hbox (badness 4416) in paragraph at lines 34070--34072 []\T1/ptm/m/n/10 Argument \T1/zi4/m/n/10 names \T1/ptm/m/n/10 was in-tro-duced in \T1/phv/m/n/10 R \T1/ptm/m/n/10 2.13.0 to avoid need-ing the com-mon use of [531] Underfull \hbox (badness 3333) in paragraph at lines 34167--34172 []\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi s may need to be matched ex-plic-itly: for ex-am-ple [532] [533] [534] [535] [536] [537] [538] [539] [540] [541] Underfull \hbox (badness 1472) in paragraph at lines 34774--34777 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee p their source in-clud-ing com-ments, see [542] [543] [544] [545] [546] [547] [548] [549] [550] [551] Underfull \hbox (badness 2671) in paragraph at lines 35431--35434 []\T1/ptm/m/n/10 levels to re-move for all fac-tors in \T1/zi4/m/n/10 ...\T1/pt m/m/n/10 . If set to \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 , it im-plies [552] [553] [554] [555] [556] [557] Underfull \hbox (badness 10000) in paragraph at lines 35829--35832 [][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [ ][]$http : / / developer . r-[]project . org / [558] [559] Underfull \hbox (badness 10000) in paragraph at lines 35950--35954 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 getTaskCallbackNames [][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer . [560] Underfull \hbox (badness 10000) in paragraph at lines 36012--36016 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[ ][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer . [561] [562] [563] [564] [565] [566] [567] [568] [569] [570] [571] [572] [573] [574] [575] [576] [577] [578] Underfull \hbox (badness 1990) in paragraph at lines 37137--37145 []\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e r-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 37137--37145 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less [579] [580] [581] [582] Underfull \hbox (badness 1515) in paragraph at lines 37406--37411 []\T1/ptm/m/n/10 On most plat-forms `file' in-cludes sym-bolic links, fi-fos an d sock-ets. Prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 2.15.0 [583] [584] [585] Underfull \hbox (badness 1917) in paragraph at lines 37636--37643 []\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/ ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute [586] [587] [588] [589] [590] [591] [592] [593] [594] Underfull \hbox (badness 3668) in paragraph at lines 38203--38205 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di- ately, even if [595] [596] Underfull \hbox (badness 2401) in paragraph at lines 38304--38308 []\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [597] [598] [599] Underfull \hbox (badness 6542) in paragraph at lines 38481--38486 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m /n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is [600] [601] [602] Underfull \vbox (badness 3803) has occurred while \output is active [603] [604] [605] [606] Underfull \hbox (badness 10000) in paragraph at lines 38909--38914 []\T1/ptm/m/n/10 This is a spe-cial case of rank-ing, but as a less gen-eral fu nc-tion than [][]\T1/zi4/m/n/10 rank[][][] Underfull \hbox (badness 10000) in paragraph at lines 38909--38914 \T1/ptm/m/n/10 is more suit-able to be made generic. The de-fault method is sim -i-lar to [607] Underfull \hbox (badness 5417) in paragraph at lines 38999--39003 []\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [608] Underfull \hbox (badness 10000) in paragraph at lines 39060--39064 []\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard ' reg-exps, in-clud-ing el-e-ments named [609] [610]) (./compiler-pkg.tex Chapter 2. [611] [612] [613] [614]) (./datasets-pkg.tex Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 12--14 []\T1/ptm/m/n/10 This pack-age con-tains a va-ri-ety of datasets. For a com-ple te list, use [615] [616] [617] [618] [619] [620] [621] [622] [623] [624] [625] [626] [627] [628] [629] [630] [631] [632] [633] [634] [635] [636] [637] [638] [639] [640] [641] [642] [643] [644] [645] [646] [647] [648] [649] [650] [651] [652] [653] [654] [655] [656] [657] [658] [659] [660] [661] Underfull \vbox (badness 10000) has occurred while \output is active [662] [663] [664] [665] [666] [667] [668] [669] [670] [671] [672] [673] [674] [675] [676] [677] [678] [679] [680] Underfull \hbox (badness 1325) in paragraph at lines 3873--3876 []\T1/ptm/m/n/10 For back-ground on Bristle-cone pines and Methuse-lah Walk, se e [][]$\T1/zi4/m/n/10 http : / / www . sonic . net / [681] Underfull \vbox (badness 10000) has occurred while \output is active [682] [683] [684] [685] Underfull \vbox (badness 10000) has occurred while \output is active [686] Underfull \vbox (badness 10000) has occurred while \output is active [687] [688] [689] [690] [691] [692] [693] [694]) (./grDevices-pkg.tex Chapter 4. [695] [696] [697] [698] [699] [700] [701] [702] [703] [704] [705] [706] [707] [708] [709] [710] [711] Underfull \hbox (badness 5175) in paragraph at lines 1048--1050 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [712] [713] [714] Underfull \hbox (badness 1852) in paragraph at lines 1245--1248 []\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col- ors that will be used in plot-ting, call-ing [715] [716] [717] Underfull \hbox (badness 1490) in paragraph at lines 1448--1453 \T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\ T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/ 10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and [718] Underfull \hbox (badness 2698) in paragraph at lines 1502--1505 []\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 if the de-vice does not sup-port cap-ture, oth-er-wise a ma-trix of color names (for [719] Underfull \hbox (badness 10000) in paragraph at lines 1571--1575 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , the func-tion also re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 when [720] [721] [722] [723] [724] Underfull \hbox (badness 1033) in paragraph at lines 1854--1867 \T1/zi4/m/n/10 "pgnm"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pgnmraw"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pnm"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pnmraw"\T1/ptm/m/n/10 , \T 1/zi4/m/n/10 "ppm"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "ppmraw"\T1/ptm/m/n/10 , \T1/ zi4/m/n/10 "pkm"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pkmraw"\T1/ptm/m/n/10 , \T1/zi 4/m/n/10 "tiffcrle"\T1/ptm/m/n/10 , Underfull \hbox (badness 3758) in paragraph at lines 1854--1867 \T1/zi4/m/n/10 "tiffg3"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "tiffg32d"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "tiffg4"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "tifflzw"\T1/ptm/m/n/ 10 , \T1/zi4/m/n/10 "tiffpack"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "tiff12nc"\T1/ptm /m/n/10 , \T1/zi4/m/n/10 "tiff24nc"\T1/ptm/m/n/10 , Underfull \hbox (badness 3128) in paragraph at lines 1854--1867 \T1/zi4/m/n/10 "tiff32nc" "psmono"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "psgray"\T1/p tm/m/n/10 , \T1/zi4/m/n/10 "psrgb"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bit"\T1/ptm/ m/n/10 , \T1/zi4/m/n/10 "bitrgb"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bitcmyk"\T1/pt m/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 , Underfull \hbox (badness 1546) in paragraph at lines 1854--1867 \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/1 0 , \T1/zi4/m/n/10 "png16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "png256"\T1/ptm/m/n/1 0 , \T1/zi4/m/n/10 "png16m"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "png48"\T1/ptm/m/n/1 0 , \T1/zi4/m/n/10 "jpeg"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "jpeggray"\T1/ptm/m/n/ 10 , [725] Underfull \hbox (badness 10000) in paragraph at lines 1963--1965 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [726] [727] [728] Underfull \hbox (badness 6758) in paragraph at lines 2115--2118 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [729] [730] [731] [732] [733] [734] [735] [736] Underfull \hbox (badness 10000) in paragraph at lines 2618--2619 [737] [738] [739] [740] [741] [742] [743] Underfull \hbox (badness 1152) in paragraph at lines 3056--3058 []\T1/ptm/m/n/10 A length two in-te-ger vec-tor \T1/zi4/m/n/10 nr, nc \T1/ptm/m /n/10 giv-ing the num-ber of rows and columns, ful-fill-ing [744] [745] [746] [747] [748] Underfull \hbox (badness 2856) in paragraph at lines 3377--3380 []\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv e a C in-te-ger for-mat such as Underfull \hbox (badness 2662) in paragraph at lines 3391--3393 []\T1/ptm/m/n/10 title string to em-bed as the `\T1/zi4/m/n/10 /Title\T1/ptm/m/ n/10 ' field in the file. De-faults to [749] [750] Underfull \hbox (badness 1173) in paragraph at lines 3507--3517 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 paper \T1/ptm/m/n/10 ar-gu-ment sets the `\ T1/zi4/m/n/10 /MediaBox\T1/ptm/m/n/10 ' en-try in the file, which de-faults to \T1/zi4/m/n/10 width \T1/ptm/m/n/10 by [751] [752] [753] [754] [755] [756] [757] Underfull \vbox (badness 10000) has occurred while \output is active [758] [759] Underfull \vbox (badness 3803) has occurred while \output is active [760] [761] Underfull \hbox (badness 1067) in paragraph at lines 4208--4215 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [762] [763] [764] Underfull \hbox (badness 1789) in paragraph at lines 4430--4432 []\T1/ptm/m/n/10 title string to em-bed as the \T1/zi4/m/n/10 Title \T1/ptm/m/n /10 com-ment in the file. De-faults to [765] Underfull \hbox (badness 1377) in paragraph at lines 4480--4485 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues Underfull \hbox (badness 2671) in paragraph at lines 4507--4515 \T1/ptm/m/n/10 For use in this way you will prob-a-bly want to use [][]\T1/zi4/ m/n/10 setEPS[][][]() \T1/ptm/m/n/10 to set the de-faults as [766] Underfull \hbox (badness 1418) in paragraph at lines 4556--4563 \T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4 /m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/ zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm /m/n/10 , Underfull \hbox (badness 2443) in paragraph at lines 4564--4573 \T1/ptm/m/n/10 PostScript de-vice is us-ing URW fonts, you will ob-tain ac-cess to more char-ac-ters and Underfull \hbox (badness 2653) in paragraph at lines 4564--4573 \T1/ptm/m/n/10 more ap-pro-pri-ate met-rics by us-ing these names. To make thes e eas-ier to re-mem-ber, Underfull \hbox (badness 1755) in paragraph at lines 4574--4576 []\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East Asian lan-guages -- see [767] [768] Underfull \hbox (badness 1057) in paragraph at lines 4685--4690 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \ T1/zi4/m/n/10 "rgb"\T1/ptm/m/n/10 ) (which is RGB+gray) and Underfull \hbox (badness 7344) in paragraph at lines 4745--4747 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [769] [770] [771] Underfull \hbox (badness 2035) in paragraph at lines 4869--4878 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 4869--4878 \T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/ n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 4869--4878 \T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 , [772] Underfull \hbox (badness 6775) in paragraph at lines 4936--4944 \T1/ptm/m/n/10 can be found at [][]$\T1/zi4/m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu / chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Underfull \hbox (badness 3000) in paragraph at lines 4936--4944 \T1/ptm/m/n/10 Lunde's CJKV re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly . com / pub / examples / nutshell / cjkv / Underfull \hbox (badness 7344) in paragraph at lines 4955--4957 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [773] [774] Underfull \hbox (badness 1546) in paragraph at lines 5075--5083 []\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T 1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/ n/10 , [775] Underfull \hbox (badness 1648) in paragraph at lines 5152--5156 []\T1/ptm/m/n/10 title for the Quartz win-dow (ap-plies to on-screen out-put on ly), de-fault [776] [777] [778] [779] [780] [781] [782] Underfull \hbox (badness 10000) in paragraph at lines 5569--5572 []\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red /green/blue) into HSV space [783] [784] [785] [786] [787] [788] [789] Underfull \hbox (badness 1189) in paragraph at lines 5965--5967 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [790] Underfull \hbox (badness 10000) in paragraph at lines 6063--6065 []\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK lan-guages and [791] [792] [793] [794] [795] Underfull \hbox (badness 3780) in paragraph at lines 6354--6360 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1 0 "AvantGarde"\T1/ptm/m/n/10 , [796] [797] Underfull \hbox (badness 2680) in paragraph at lines 6550--6552 []\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of [798] [799] [800]) (./graphics-pkg.tex Chapter 5. [801] [802] [803] [804] [805] [806] [807] [808] [809] [810] [811] Underfull \hbox (badness 10000) in paragraph at lines 690--697 []\T1/zi4/m/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/p tm/m/n/10 in-ter-face to the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/pt m/m/n/10 in [812] [813] [814] [815] [816] [817] [818] [819] [820] [821] Underfull \hbox (badness 4634) in paragraph at lines 1253--1256 [][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n /10 , [822] [823] [824] [825] [826] [827] [828] [829] [830] [831] [832] [833] [834] [835] [836] [837] [838] Underfull \hbox (badness 1009) in paragraph at lines 2285--2292 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [839] [840] [841] [842] [843] [844] [845] [846] [847] [848] [849] [850] [851] [852] [853] [854] [855] [856] [857] [858] [859] [860] Underfull \vbox (badness 10000) has occurred while \output is active [861] [862] [863] [864] Underfull \hbox (badness 1867) in paragraph at lines 3911--3915 []\T1/ptm/m/n/10 vector of back-ground (fill) col-ors for the open plot sym-bol s given by [865] [866] [867] [868] [869] [870] [871] [872] Underfull \hbox (badness 1924) in paragraph at lines 4362--4367 []\T1/ptm/m/n/10 a func-tion which in-di-cates what should hap-pen when the dat a con-tain [873] Underfull \hbox (badness 2529) in paragraph at lines 4391--4394 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used: see [874] [875] [876] [877] Underfull \hbox (badness 10000) in paragraph at lines 4735--4741 []\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n /10 (width, height) \T1/ptm/m/n/10 in user co-or-di-nate units. Underfull \hbox (badness 5908) in paragraph at lines 4735--4741 \T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin" ) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that [878] [879] Underfull \hbox (badness 10000) in paragraph at lines 4865--4868 [880 ] Underfull \hbox (badness 10000) in paragraph at lines 4926--4928 Underfull \vbox (badness 10000) has occurred while \output is active [881] [882 ] [883] Underfull \hbox (badness 10000) in paragraph at lines 5119--5121 []\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2 :6\T1/ptm/m/n/10 ) cor-re-spond to [884] [885] [886] [887] [888] Underfull \vbox (badness 10000) has occurred while \output is active [889] [890] [891] [892] [893] [894] [895] [896] [897] [898] [899] [900] [901] [902] [903] [904] [905] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6523--6524 [][] [906 ] [907] [908] [909] [910] [911] [912] [913] [914] [915] [916] [917] Underfull \hbox (badness 1048) in paragraph at lines 7231--7236 \T1/ptm/m/n/10 avoided (see the Warn-ings sec-tion be-low). Split-screen mode i s ex-ited by the com-mand [918] [919] Underfull \hbox (badness 1038) in paragraph at lines 7347--7350 []\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d rawn be-tween the point \T1/zi4/m/n/10 (x0[i], y0[i]) \T1/ptm/m/n/10 and the po int [920] [921] [922] [923] [924] [925] [926] [927] [928] [929] [930] [931] [932] [933] [934] [935] [936] [937] [938] [939] [940] Underfull \hbox (badness 6691) in paragraph at lines 8564--8567 []\T1/ptm/m/n/10 The main ti-tle (on top) us-ing font and size (char-ac-ter ex- pan-sion) Underfull \hbox (badness 2799) in paragraph at lines 8567--8569 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font and size \T1/zi4/m/n/10 par ("font.sub") \T1/ptm/m/n/10 and color [941]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.unit s}) has been already used, duplicate ignored \relax l.8649 \HeaderA{units}{Graphical Units}{units} [942] [943] [944] [945] [946]) (./grid-pkg.tex Chapter 6. Underfull \vbox (badness 10000) has occurred while \output is active [947] [948] [949] [950] [951] [952] [953] Underfull \hbox (badness 2680) in paragraph at lines 405--408 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1 /zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio n of [954] [955] [956] Overfull \vbox (10.43605pt too high) has occurred while \output is active [957] [958] [959] [960] [961] Underfull \hbox (badness 4279) in paragraph at lines 945--954 [][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m /n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 unit[][][]\T1/ptm/m/n/10 , [962] Underfull \vbox (badness 3803) has occurred while \output is active [963] [964] [965] Underfull \hbox (badness 2781) in paragraph at lines 1147--1150 []\T1/ptm/m/n/10 Both func-tions cre-ate an ar-rows grob (a graph-i-cal ob-ject de-scrib-ing ar-rows), but only [966] Underfull \vbox (badness 10000) has occurred while \output is active [967] [968] [969] [970] [971] [972] [973] [974] [975] [976] [977] [978] [979] [980] [981] [982] [983] [984] [985] [986] [987] [988] [989] [990] [991] [992] [993] [994] [995] [996] [997] [998] [999] [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009] [1010] [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020] Underfull \hbox (badness 1067) in paragraph at lines 4358--4361 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1021] [1022] [1023] [1024] Underfull \hbox (badness 7256) in paragraph at lines 4597--4599 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033] [1034] [1035] [1036] [1037] [1038] [1039] [1040] [1041] [1042] [1043] [1044] Underfull \hbox (badness 10000) in paragraph at lines 5804--5810 \T1/ptm/m/n/10 and to spec-ify the min-i-mum or max-i-mum of a list of unit ob- jects (e.g., [1045] [1046] [1047] [1048] [1049] [1050] [1051] [1052] [1053] Underfull \hbox (badness 7649) in paragraph at lines 6266--6269 []\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by do-ing some-thing like [1054] [1055] [1056] [1057]) (./methods-pkg.tex [1058] Chapter 7. [1059] [1060] [1061] [1062] [1063] [1064] [1065] [1066] [1067] [1068] [1069] [1070] [1071] [1072] [1073] [1074] Underfull \vbox (badness 2277) has occurred while \output is active [1075] [1076] [1077] [1078] Underfull \hbox (badness 2237) in paragraph at lines 1432--1434 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \ T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package "\T1/ptm/m/n/10 , also of class [1079] [1080] [1081] [1082] [1083] [1084] [1085] [1086] [1087] Underfull \hbox (badness 10000) in paragraph at lines 2028--2033 []\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c an be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 2028--2033 \T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1 0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the [1088] [1089] [1090] [1091] [1092] [1093] [1094] [1095] Underfull \hbox (badness 10000) in paragraph at lines 2628--2631 []\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o b-jects of class [1096] [1097] Underfull \hbox (badness 1132) in paragraph at lines 2768--2772 []\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1 0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re -turned re-sult is in [1098] Underfull \hbox (badness 1033) in paragraph at lines 2800--2805 \T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store s the [1099] [1100] [1101] [1102] [1103] [1104] [1105] Underfull \hbox (badness 1102) in paragraph at lines 3308--3310 []\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na me of the pack-age (with-out the ex-tra-ne-ous [1106] [1107] [1108] [1109] [1110] Underfull \hbox (badness 10000) in paragraph at lines 3637--3642 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these classes takes spe-cial ar-gu-ments Underfull \hbox (badness 10000) in paragraph at lines 3645--3654 []\T1/ptm/m/n/10 The [1111] [1112] [1113] [1114] [1115] [1116] Underfull \vbox (badness 10000) has occurred while \output is active [1117] [1118] [1119] [1120] [1121] [1122] [1123] [1124] Underfull \hbox (badness 1436) in paragraph at lines 4550--4553 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "SealedMethodDefinition" \T1/ptm/m/n/ 10 is cre-ated by a call to [][]\T1/zi4/m/n/10 setMethod[][][] \T1/ptm/m/n/10 w ith ar-gu-ment Underfull \hbox (badness 1769) in paragraph at lines 4579--4585 []\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4579--4585 \T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T 1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by [1125] [1126] [1127] [1128] [1129] [1130] Underfull \vbox (badness 2111) has occurred while \output is active [1131] [1132] Underfull \vbox (badness 10000) has occurred while \output is active [1133] [1134] Underfull \hbox (badness 1092) in paragraph at lines 5251--5258 \T1/ptm/m/n/10 names cor-re-spond-ing to some or all of the for-mal ar-gu-ments . In the pre-vi-ous ex-am-ple, Underfull \hbox (badness 1117) in paragraph at lines 5251--5258 \T1/ptm/m/n/10 if se-lect-ing class \T1/zi4/m/n/10 "track" \T1/ptm/m/n/10 for \ T1/zi4/m/n/10 x\T1/ptm/m/n/10 , find-ing that the se-lec-tion was an-other meth -ods list and Underfull \hbox (badness 4036) in paragraph at lines 5299--5302 []\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10 the method to use in re-sponse to a [1135] [1136] [1137] [1138] [1139] Underfull \hbox (badness 1087) in paragraph at lines 5619--5624 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1140] [1141] [1142] [1143] Underfull \hbox (badness 2221) in paragraph at lines 5845--5850 []\T1/ptm/m/n/10 Two op-tional method names are in-ter-preted spe-cially, \T1/z i4/m/n/10 initialize \T1/ptm/m/n/10 and [1144] [1145] [1146] [1147] [1148] [1149] [1150] [1151] Underfull \vbox (badness 10000) has occurred while \output is active [1152] [1153]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4} ) has been already used, duplicate ignored \relax l.6703 \aliasA{S4}{S3Part}{S4} [1154] [1155] [1156] [1157]pdfTeX warning (ext4) : destination with the same identifier (name{Rfn.Complex}) has been already use d, duplicate ignored \relax l.6979 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate ignored \relax l.6981 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) has been already used, duplicate igno red \relax l.6982 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination wi th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.6984 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor ed \relax l.6985 \aliasA{Summary}{S4groupGeneric}{Summary} [1158] Underfull \hbox (badness 2050) in paragraph at lines 7046--7050 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1159] [1160] [1161] Underfull \hbox (badness 1286) in paragraph at lines 7229--7231 []\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal ly [1162] [1163] [1164] [1165] [1166] [1167] [1168] [1169] [1170] [1171] [1172] [1173] [1174] [1175] [1176] [1177] [1178] [1179] [1180] [1181] [1182] [1183] Underfull \vbox (badness 10000) has occurred while \output is active [1184] [1185] [1186] [1187] [1188] [1189] [1190] [1191] [1192] [1193] [1194] Underfull \hbox (badness 2894) in paragraph at lines 9562--9566 []\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance in R [][]$\T1/zi4/m/n/10 http : / / stat . stanford . edu / ~jmc4 / [1195] Underfull \hbox (badness 1852) in paragraph at lines 9641--9645 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1196] [1197] [1198] [1199]) (./parallel-pkg.tex [1200] Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 15--17 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4 /m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[ ][][]: see [1201] [1202] [1203] [1204] [1205] [1206] [1207] [1208] [1209] [1210] [1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218] [1219] Underfull \hbox (badness 3386) in paragraph at lines 1221--1224 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R andom.seed \T1/ptm/m/n/10 when the [1220] [1221] [1222]) (./splines-pkg.tex Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1223] [1224] [1225] [1226] [1227] [1228] [1229] [1230] [1231] [1232] [1233] [1234] [1235] [1236] [1237]) (./stats-pkg.tex [1238] Chapter 10. [1239] [1240] [1241] [1242] [1243] [1244] [1245] [1246] [1247] [1248] [1249] [1250] [1251] Underfull \hbox (badness 1412) in paragraph at lines 843--845 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm \T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for [1252] [1253] [1254] [1255] [1256] [1257] [1258] [1259] Underfull \hbox (badness 2503) in paragraph at lines 1327--1330 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1260] [1261] [1262] Underfull \hbox (badness 10000) in paragraph at lines 1506--1510 []\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov", "lm") \T1/ptm/m/n/ 10 or for mul-ti-ple re-sponses of class [1263] [1264] [1265] [1266] [1267] [1268] [1269] [1270] [1271] [1272] [1273] Underfull \hbox (badness 3965) in paragraph at lines 2156--2158 []\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val id for [1274] [1275] [1276] [1277] [1278] Underfull \hbox (badness 3965) in paragraph at lines 2485--2487 []\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val id for [1279] [1280] [1281] [1282] [1283] [1284] [1285] [1286] [1287] [1288] [1289] [1290] Underfull \hbox (badness 2503) in paragraph at lines 3260--3263 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1291] [1292] [1293] [1294] [1295] [1296] [1297] [1298] [1299] [1300] [1301] [1302] [1303] [1304] [1305] [1306] [1307] [1308] [1309] [1310] Underfull \hbox (badness 3989) in paragraph at lines 4482--4489 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1311] [1312] [1313] [1314] [1315] [1316] [1317] [1318] [1319] [1320] Underfull \hbox (badness 2932) in paragraph at lines 5097--5099 []\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se- quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is given by [1321] [1322] [1323] [1324] Underfull \hbox (badness 1142) in paragraph at lines 5338--5350 \T1/ptm/m/n/10 For \T1/zi4/m/n/10 cov()\T1/ptm/m/n/10 , a non-Pearson method is un-usual but avail-able for the sake of com-plete-ness. [1325] [1326] Underfull \hbox (badness 2503) in paragraph at lines 5477--5481 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1327] Underfull \hbox (badness 1168) in paragraph at lines 5538--5543 []\T1/ptm/m/n/10 For Spear-man's test, p-values are com-puted us-ing al-go-rith m AS 89 for $\OML/cmm/m/it/10 n < \OT1/cmr/m/n/10 1290$ \T1/ptm/m/n/10 and [1328] [1329] [1330] [1331] [1332] [1333] [1334] Underfull \hbox (badness 8132) in paragraph at lines 5981--5986 \T1/ptm/m/n/10 then \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is a den-dro-gram of the sa me graph struc-ture as \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and for each node, [1335] [1336] [1337] [1338] [1339] Underfull \hbox (badness 7081) in paragraph at lines 6236--6239 []\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 10000) in paragraph at lines 6240--6242 []\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also [1340] Underfull \vbox (badness 10000) has occurred while \output is active [1341] [1342] [1343] [1344] [1345] [1346] [1347] [1348] [1349] [1350] [1351] Underfull \hbox (badness 10000) in paragraph at lines 7040--7043 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T 1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the [1352] [1353] Underfull \hbox (badness 10000) in paragraph at lines 7177--7180 []\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/zi4/m/n/10 ht tp : / / cran . r-[]project . org / web / views / [1354] [1355] [1356] [1357] Underfull \vbox (badness 3803) has occurred while \output is active [1358] [1359] [1360] [1361] [1362] [1363] [1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] [1377] Underfull \hbox (badness 2626) in paragraph at lines 8629--8632 []\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1378] Underfull \hbox (badness 2503) in paragraph at lines 8729--8733 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1379] [1380] [1381] [1382] [1383] [1384] Overfull \hbox (6.88992pt too wide) in paragraph at lines 9063--9065 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Fligner-Killeen test of homogeneity of variances"\T1/ptm/m/n/10 . [1385] [1386] [1387] [1388] [1389] [1390] [1391] [1392] [1393] [1394] Underfull \hbox (badness 1019) in paragraph at lines 9729--9732 []\T1/ptm/m/n/10 See also [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Incomplete _ gamma _ function$[][]\T1/ptm/m/n/10 , or [][]$\T1/zi4/m/n/ 10 http : / / dlmf . [1395] [1396] [1397] [1398] Underfull \hbox (badness 4518) in paragraph at lines 9990--9995 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1399] [1400] [1401] [1402] [1403] Underfull \hbox (badness 2142) in paragraph at lines 10333--10336 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ Underfull \hbox (badness 1253) in paragraph at lines 10352--10355 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][ ]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it- er-a-tion. Hence, [1404] Underfull \hbox (badness 1708) in paragraph at lines 10414--10417 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1405] [1406] [1407] [1408] [1409] Underfull \hbox (badness 1694) in paragraph at lines 10762--10765 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1410] Underfull \hbox (badness 1867) in paragraph at lines 10781--10790 \T1/ptm/m/n/10 in the row case. If ei-ther is miss-ing, as by de-fault, then th e or-der-ing of the cor-re- [1411] [1412] [1413] [1414] [1415] [1416] [1417]pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.hat}) has been already used, duplicate i gnored \relax l.11228 \aliasA{hat}{influence.measures}{hat} [1418] [1419] Underfull \hbox (badness 1484) in paragraph at lines 11352--11354 []\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1420] [1421] [1422] [1423] [1424] [1425] [1426] [1427] [1428] Underfull \hbox (badness 4441) in paragraph at lines 11899--11901 []\T1/ptm/m/n/10 vector of dif-fer-enc-ing co-ef-fi-cients, so an ARMA model is fit-ted to [1429] [1430] [1431] [1432] [1433] Underfull \hbox (badness 2894) in paragraph at lines 12196--12200 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1434] [1435] [1436] [1437] [1438] [1439] [1440] [1441] [1442] [1443] [1444] Underfull \hbox (badness 4518) in paragraph at lines 12877--12882 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1445] [1446] [1447] [1448] [1449] [1450] [1451] [1452] [1453] [1454] Underfull \hbox (badness 4518) in paragraph at lines 13495--13500 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1455] [1456] [1457] [1458] [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] [1473] Underfull \hbox (badness 2503) in paragraph at lines 14694--14698 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1474] [1475] Underfull \vbox (badness 3803) has occurred while \output is active [1476] [1477] [1478] [1479] [1480] [1481] [1482] Underfull \hbox (badness 1418) in paragraph at lines 15203--15209 []\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response \T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(, "offset") \T1 /ptm/m/n/10 and [1483] [1484] [1485] [1486] [1487] [1488] [1489] [1490] [1491] [1492] [1493] [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504] [1505] Underfull \vbox (badness 3803) has occurred while \output is active [1506] [1507] [1508] Underfull \hbox (badness 2359) in paragraph at lines 16828--16830 []\T1/ptm/m/n/10 Douglas M. Bates and Saikat De-bRoy: David M. Gay for the For- tran code used by [1509] Underfull \vbox (badness 10000) has occurred while \output is active [1510] Underfull \vbox (badness 10000) has occurred while \output is active [1511] [1512] [1513] [1514] [1515] [1516] [1517] [1518] [1519] [1520] [1521] [1522] [1523] Underfull \hbox (badness 1377) in paragraph at lines 17734--17739 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 17739--17742 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 1184) in paragraph at lines 17752--17756 \T1/ptm/m/n/10 value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + reltol ) \T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 17760--17764 []\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \ T1/ptm/m/n/10 meth-ods if [1524] [1525] [1526] Underfull \vbox (badness 10000) has occurred while \output is active [1527] [1528] [1529] [1530] [1531] [1532] [1533] Underfull \hbox (badness 1337) in paragraph at lines 18376--18379 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1534] [1535] [1536] [1537] [1538] [1539] [1540] [1541] [1542] [1543] [1544] [1545] [1546] Underfull \hbox (badness 5563) in paragraph at lines 19103--19105 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , add to al-read y ex-ist-ing plot. Only valid for Underfull \hbox (badness 1194) in paragraph at lines 19106--19109 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1547] [1548] [1549] [1550] [1551] [1552] Underfull \hbox (badness 2503) in paragraph at lines 19478--19481 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1553] Underfull \hbox (badness 10000) in paragraph at lines 19505--19507 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1 /ptm/m/n/10 or [1554] [1555] [1556] [1557] [1558] [1559] [1560] [1561] [1562] [1563] [1564] [1565] [1566] [1567] [1568] Underfull \hbox (badness 10000) in paragraph at lines 20475--20481 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][ ][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 , [1569] [1570] [1571] [1572] [1573] [1574] [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] [1586] [1587] [1588] [1589] [1590] [1591] Underfull \hbox (badness 1337) in paragraph at lines 21781--21787 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1592] [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601] [1602] [1603] Underfull \hbox (badness 10000) in paragraph at lines 22574--22577 []\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by [1604] [1605] [1606] [1607] [1608] [1609] [1610] [1611] [1612] [1613] Underfull \hbox (badness 10000) in paragraph at lines 23150--23153 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run med(x, k) \T1/ptm/m/n/10 sim-ply has Underfull \hbox (badness 3690) in paragraph at lines 23201--23205 [][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's end point rule and is called by de-fault from [1614] [1615] [1616] [1617] [1618] Underfull \hbox (badness 7667) in paragraph at lines 23467--23469 []\T1/ptm/m/n/10 a nu-meric vec-tor or an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-je ct which is co-ercible to one by [1619] [1620] [1621] [1622] Underfull \hbox (badness 3439) in paragraph at lines 23676--23682 [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSasympO rig[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSbiexp[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 SSfol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSfpl[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 SSgompertz[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 SSlogis[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSmicmen[][][]\T1/ptm/m/n/1 0 , [1623] [1624] [1625] [1626] [1627] [1628] [1629] [1630] [1631] [1632] [1633] [1634] [1635] [1636] [1637] [1638] [1639] [1640] [1641] [1642] [1643] [1644] [1645] Underfull \vbox (badness 10000) has occurred while \output is active [1646] Underfull \hbox (badness 3514) in paragraph at lines 25217--25222 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1647] Underfull \hbox (badness 3514) in paragraph at lines 25279--25284 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1648] Underfull \hbox (badness 3514) in paragraph at lines 25336--25341 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1649] Underfull \hbox (badness 3514) in paragraph at lines 25397--25403 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1650] [1651] [1652] [1653] Underfull \hbox (badness 3514) in paragraph at lines 25592--25597 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion Underfull \hbox (badness 3514) in paragraph at lines 25648--25653 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1654] Underfull \hbox (badness 3514) in paragraph at lines 25705--25710 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1655] Underfull \hbox (badness 3514) in paragraph at lines 25760--25765 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1656] [1657] Underfull \hbox (badness 6691) in paragraph at lines 25829--25834 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p tm/m/n/10 . It is the value of the ex-pres-sion [1658] [1659] [1660] [1661] [1662] [1663] [1664] [1665] Underfull \hbox (badness 10000) in paragraph at lines 26342--26345 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex- Underfull \hbox (badness 10000) in paragraph at lines 26342--26345 \T1/ptm/m/n/10 trac-tion, which should be odd. If \T1/zi4/m/n/10 NULL\T1/ptm/m/ n/10 , the de-fault, [1666] [1667] [1668] [1669] [1670] [1671] [1672] [1673] [1674] [1675] Underfull \hbox (badness 5431) in paragraph at lines 26948--26950 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1676] [1677] [1678] [1679] Underfull \hbox (badness 5431) in paragraph at lines 27158--27161 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1680] [1681] [1682] [1683] [1684] Underfull \hbox (badness 1337) in paragraph at lines 27469--27473 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1685] [1686] Underfull \hbox (badness 10000) in paragraph at lines 27586--27589 []\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/ 10 ; cur-rently ex-cept for \T1/zi4/m/n/10 rt()\T1/ptm/m/n/10 , only for [1687] [1688] [1689] Underfull \hbox (badness 1616) in paragraph at lines 27769--27772 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1690] [1691] [1692] [1693] [1694] [1695] [1696] [1697] [1698] [1699] [1700] [1701] [1702] [1703] [1704] [1705] [1706] [1707] [1708] [1709] [1710] [1711] [1712] Underfull \hbox (badness 1337) in paragraph at lines 29169--29173 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1713] [1714] [1715] [1716] [1717] [1718] [1719] [1720] Underfull \hbox (badness 1337) in paragraph at lines 29653--29657 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1721] Underfull \hbox (badness 5161) in paragraph at lines 29746--29748 []\T1/ptm/m/n/10 an es-ti-mate of the lo-ca-tion pa-ram-e-ter. (Only present if ar-gu-ment [1722] [1723] [1724] [1725] [1726] [1727] Underfull \hbox (badness 10000) in paragraph at lines 30110--30115 []\T1/ptm/m/n/10 There is a \T1/zi4/m/n/10 summary \T1/ptm/m/n/10 method for co n-tin-gency ta-ble ob-jects cre-ated by \T1/zi4/m/n/10 table \T1/ptm/m/n/10 or [1728] [1729] [1730]) (./stats4-pkg.tex Chapter 11. [1731] [1732] [1733] [1734] [1735] [1736]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup licate ignored \relax l.407 ...Package \pkg{stats4}}{show.Rdash.methods} [1737] [1738] [1739] [1740]) (./tcltk-pkg.tex Chapter 12. [1741] [1742] [1743] [1744] [1745] [1746] [1747] Underfull \vbox (badness 10000) has occurred while \output is active [1748] Underfull \vbox (badness 10000) has occurred while \output is active [1749] Underfull \hbox (badness 1546) in paragraph at lines 649--656 []\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing any Tk or Tcl com-mand by sim-ply run-ning [1750] [1751] [1752] [1753] Underfull \vbox (badness 10000) has occurred while \output is active [1754] [1755] [1756] [1757] [1758] [1759] [1760] Underfull \hbox (badness 3375) in paragraph at lines 1390--1393 [][][]\T1/zi4/m/n/10 select.list[][][] \T1/ptm/m/n/10 (a text ver-sion ex-cept on Win-dows and the OS X GUI), [][]\T1/zi4/m/n/10 menu[][][] \T1/ptm/m/n/10 (wh ose [1761]) (./tools-pkg.tex [1762] Chapter 13. [1763] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1764] Underfull \hbox (badness 3039) in paragraph at lines 164--167 []\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1765] [1766] Underfull \hbox (badness 1308) in paragraph at lines 285--298 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 285--298 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 formatMastersthesis\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm /m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma tTechreport \T1/ptm/m/n/10 and [1767] [1768] [1769] Underfull \hbox (badness 2080) in paragraph at lines 449--454 \T1/ptm/m/n/10 ac-ters. It is sorted by Uni-code point and within a point al-ph a-bet-i-cally on the glyph Underfull \hbox (badness 2644) in paragraph at lines 449--454 \T1/ptm/m/n/10 (there can be more than one name for a Uni-code point). The data are in the file [1770] [1771] [1772] [1773] [1774] Overfull \vbox (3.73149pt too high) has occurred while \output is active [1775] [1776] [1777] [1778] Underfull \hbox (badness 1635) in paragraph at lines 962--964 []\T1/ptm/m/n/10 Delete files in the tem-po-rary di-rec-tory? This op-tion is i g-nored when [1779] Underfull \hbox (badness 4441) in paragraph at lines 1036--1044 \T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe n-den-cies (de- Underfull \hbox (badness 1014) in paragraph at lines 1056--1058 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies [1780] Underfull \hbox (badness 10000) in paragraph at lines 1079--1082 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1079--1082 \T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 , [1781] [1782] Underfull \hbox (badness 10000) in paragraph at lines 1207--1209 []\T1/ptm/m/n/10 Re-save PDF files (es-pe-cially vi-gnettes) more com-pactly. S up-port func-tion for [1783] [1784] Underfull \hbox (badness 7981) in paragraph at lines 1378--1382 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1785] Underfull \hbox (badness 1082) in paragraph at lines 1384--1386 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see [1786] [1787] [1788] [1789] Underfull \hbox (badness 5726) in paragraph at lines 1651--1656 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/n/10 De pendsList \T1/ptm/m/n/10 ob-ject Underfull \hbox (badness 7221) in paragraph at lines 1651--1656 \T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo r in-stance if there was [1790] [1791] [1792] [1793] [1794] [1795] [1796] Underfull \hbox (badness 7981) in paragraph at lines 2025--2031 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1797] [1798] [1799] [1800] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/n' instead on input line 2279. [1801] [1802] [1803] Underfull \hbox (badness 1424) in paragraph at lines 2516--2518 []\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t or of links, as re-turned by [1804] [1805] [1806] [1807] [1808] [1809] [1810] [1811] [1812] Underfull \hbox (badness 1675) in paragraph at lines 3035--3037 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing how the news en-tries shoul d be \T1/ptm/m/it/10 chopped\T1/ptm/m/n/10 ; [1813] [1814] [1815] [1816] [1817] [1818] [1819] [1820] [1821] Underfull \hbox (badness 1838) in paragraph at lines 3587--3593 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 3587--3593 \T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [1822] [1823] Underfull \hbox (badness 5726) in paragraph at lines 3667--3672 []\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/sl/10 TR UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/sl/10 DependsList \T1/ptm/m/n/10 ob-ject Underfull \hbox (badness 7221) in paragraph at lines 3667--3672 \T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo r in-stance if there was [1824] [1825] Underfull \hbox (badness 1688) in paragraph at lines 3805--3817 []\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to be used in the `\T 1/zi4/m/sl/10 PACKAGES\T1/ptm/m/n/10 ' and [1826] [1827] [1828] [1829]) (./utils-pkg.tex [1830] Chapter 14. [1831] Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ', [1832] [1833] Underfull \hbox (badness 1454) in paragraph at lines 197--200 []\T1/ptm/m/n/10 logical in-di-cat-ing if the search should be case-insensitive , \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 by de- Underfull \hbox (badness 1540) in paragraph at lines 213--216 []\T1/zi4/m/sl/10 find \T1/ptm/m/n/10 is a dif-fer-ent user in-ter-face for the same task as \T1/zi4/m/sl/10 apropos\T1/ptm/m/n/10 . How-ever, by de-fault [1834] [1835] [1836] [1837] [1838] [1839] Underfull \hbox (badness 10000) in paragraph at lines 538--544 []\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1 0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 538--544 \T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the [1840] Underfull \hbox (badness 5847) in paragraph at lines 649--655 []\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to se-lect which of the pack-ages on the repos-i-to- Underfull \hbox (badness 4229) in paragraph at lines 649--655 \T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi 4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as [1841] Underfull \hbox (badness 3861) in paragraph at lines 714--719 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/ 10 "License_is_FOSS"\T1/ptm/m/n/10 , [1842] [1843] [1844] [1845] [1846] [1847] [1848] [1849] [1850] Underfull \hbox (badness 1371) in paragraph at lines 1290--1292 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [1851] [1852] [1853] [1854] Underfull \hbox (badness 2057) in paragraph at lines 1562--1564 []\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th is func-tion is in-voked for its side ef-fect of up-dat-ing [1855] [1856] [1857] Underfull \hbox (badness 5189) in paragraph at lines 1747--1749 []\T1/ptm/m/n/10 A list of keys that have been pre-vi-ously cited, to be used w hen [1858] [1859] [1860] [1861] Underfull \hbox (badness 1661) in paragraph at lines 1962--1969 []\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sim-pli-fied to an [][]\T1/zi4/m/sl/10 array[][][] \T1/ptm/m/n/10 (typ-i- Underfull \hbox (badness 1990) in paragraph at lines 1974--1977 []\T1/ptm/m/n/10 a [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4 /m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m /n/10 ar-gu-ment above. In the lat-ter case, the iden-tity [1862] [1863] [1864] [1865] [1866] [1867] [1868] [1869] [1870] [1871] [1872] [1873] [1874] [1875] [1876] Underfull \hbox (badness 1430) in paragraph at lines 2953--2959 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the \T1/zi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the Underfull \hbox (badness 2837) in paragraph at lines 2953--2959 \T1/zi4/m/sl/10 internet.info \T1/ptm/m/n/10 op-tion. The de-tails de-pend on t he plat-form and scheme, but set-ting [1877] Underfull \hbox (badness 1231) in paragraph at lines 2997--3003 []\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers via en-vi-ron-ment vari-able [1878] [1879] [1880] [1881] [1882] [1883] [1884] [1885] [1886] [1887] [1888] [1889]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.for mat}) has been already used, duplicate ignored \relax l.3763 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.format.1}) has been already used, dupl icate ignored \relax l.3763 ...mat Unordered and Ordered Lists}{format} [1890] [1891] [1892] [1893] [1894] [1895] [1896] [1897] [1898] [1899] [1900] [1901] [1902] [1903] [1904] Underfull \hbox (badness 1371) in paragraph at lines 4667--4669 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [1905] Underfull \hbox (badness 1502) in paragraph at lines 4756--4761 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 4756--4761 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [1906] [1907] [1908] Underfull \hbox (badness 10000) in paragraph at lines 4920--4929 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, [1909] [1910] Underfull \hbox (badness 3118) in paragraph at lines 5036--5038 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [1911] Underfull \hbox (badness 1082) in paragraph at lines 5118--5124 []\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 repos = NULL\T1/ptm/m/n/10 , a char-ac-ter vec-tor of file paths of `\T1/zi4/m/sl/10 .tar.gz\T1/ptm/m/n/10 ' files. [1912] Underfull \hbox (badness 1348) in paragraph at lines 5164--5169 []\T1/ptm/m/n/10 logical in-di-cat-ing to also in-stall unin-stalled pack-ages which these pack- Underfull \hbox (badness 3884) in paragraph at lines 5164--5169 \T1/ptm/m/n/10 ages de-pend on/link to/import/suggest (and so on re-cur-sively) . Not Underfull \hbox (badness 1466) in paragraph at lines 5164--5169 \T1/ptm/m/n/10 used if \T1/zi4/m/sl/10 repos = NULL\T1/ptm/m/n/10 . Can also be a char-ac-ter vec-tor, a sub-set of Underfull \hbox (badness 10000) in paragraph at lines 5219--5222 []\T1/ptm/m/n/10 (not used on Win-dows) anal-o-gous to \T1/zi4/m/sl/10 configur e.args \T1/ptm/m/n/10 for flag [1913] Underfull \hbox (badness 10000) in paragraph at lines 5245--5248 []\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to be passed Underfull \hbox (badness 10000) in paragraph at lines 5245--5248 \T1/ptm/m/n/10 to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a source pac k-age in-stall. E.g., [1914] Underfull \hbox (badness 10000) in paragraph at lines 5375--5380 [][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/ 10 , [1915] [1916] [1917] [1918] [1919] [1920] [1921] [1922] [1923] [1924] [1925] [1926] [1927] [1928] [1929] [1930] [1931] [1932] [1933] Underfull \hbox (badness 10000) in paragraph at lines 6529--6531 []\T1/zi4/m/sl/10 packageVersion() \T1/ptm/m/n/10 is a con-ve-nience short-cut, al-low-ing things like Underfull \hbox (badness 2310) in paragraph at lines 6534--6539 []\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [1934] [1935] [1936] Underfull \hbox (badness 10000) in paragraph at lines 6691--6694 []\T1/ptm/m/n/10 a data frame with columns as the \T1/ptm/m/it/10 ma-trix \T1/p tm/m/n/10 re-turned by Underfull \hbox (badness 10000) in paragraph at lines 6691--6694 [][]\T1/zi4/m/sl/10 available.packages[][][] \T1/ptm/m/n/10 plus \T1/zi4/m/sl/1 0 "Status"\T1/ptm/m/n/10 , a fac-tor with lev-els [1937] [1938] [1939] [1940] [1941] [1942] Underfull \hbox (badness 1789) in paragraph at lines 7072--7074 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [1943] [1944] [1945] [1946] [1947] [1948] [1949] [1950] [1951] [1952] [1953] [1954] Underfull \hbox (badness 1097) in paragraph at lines 7871--7874 []\T1/ptm/m/n/10 The name \T1/zi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b e used on Win-dows, in which case [1955] [1956] Underfull \hbox (badness 3000) in paragraph at lines 7999--8004 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 read.t able[][][]\T1/ptm/m/n/10 ; [1957] [1958] [1959] [1960] [1961] [1962] [1963] [1964] Underfull \hbox (badness 2134) in paragraph at lines 8561--8566 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 write. table[][][]\T1/ptm/m/n/10 ; [1965] [1966] [1967] [1968] [1969] [1970] [1971] [1972] [1973] [1974] [1975] [1976] [1977] [1978] [1979] [1980] Underfull \hbox (badness 10000) in paragraph at lines 9504--9506 [][][]$\T1/zi4/m/sl/10 http : / / en . wikipedia . org / wiki / Ctags$[][]\T1/p tm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / www . gnu . org / software / emacs / [1981] [1982] Underfull \hbox (badness 10000) in paragraph at lines 9682--9686 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n ow taken from the en-vi-ron-ment vari-able [1983] Underfull \hbox (badness 10000) in paragraph at lines 9713--9719 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a [1984] Underfull \hbox (badness 2096) in paragraph at lines 9827--9830 []\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing whether PNG fig-ures should be gen-er-ated. 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The de-fault is the cur-rently ac-t ive Underfull \hbox (badness 3449) in paragraph at lines 10583--10592 []\T1/ptm/m/n/10 string in-di-cat-ing if the \T1/zi4/m/sl/10 width \T1/ptm/m/n/ 10 ar-gu-ment's spec-i-fi-ca-tion should be fol- Underfull \hbox (badness 2512) in paragraph at lines 10583--10592 \T1/ptm/m/n/10 lowed strictly, one of the val-ues \T1/zi4/m/sl/10 c("no", "cut" , "wrap")\T1/ptm/m/n/10 . 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I t is guar-an-teed that [22] [23] [24] [25] [26] [27] [28] [29] [30] [31] Underfull \hbox (badness 10000) in paragraph at lines 1953--1955 []\T1/ptm/m/n/10 a date-time ob-ject, or some-thing which can be co-erced by [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] Underfull \vbox (badness 10000) has occurred while \output is active [48] [49] [50] [51] [52] [53] [54] Underfull \hbox (badness 10000) in paragraph at lines 3377--3379 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [55] [56] [57] [58] [59] [60] [61] [62] [63] Underfull \hbox (badness 2970) in paragraph at lines 3955--3961 []\T1/ptm/m/n/10 is there sup-port the [][]\T1/zi4/m/n/10 svg[][][]\T1/ptm/m/n/ 10 , [][]\T1/zi4/m/n/10 cairo_pdf[][][] \T1/ptm/m/n/10 and [][]\T1/zi4/m/n/10 c airo_ps[][][] \T1/ptm/m/n/10 de-vices, and for [64] [65] [66] [67] [68] [69] [70] [71] [72] Underfull \hbox (badness 2521) in paragraph at lines 4511--4513 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] Underfull \hbox (badness 2096) in paragraph at lines 5725--5738 []\T1/ptm/m/n/10 New restarts for \T1/zi4/m/n/10 withRestarts \T1/ptm/m/n/10 ca n be spec-i-fied in sev-eral ways. The sim-plest is in [92] [93] [94] [95] Underfull \hbox (badness 10000) in paragraph at lines 6048--6051 []\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo st gen-eral form (from RFC1738) is [96] [97] [98] Underfull \hbox (badness 3568) in paragraph at lines 6263--6270 \T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as [99] [100] Underfull \vbox (badness 3803) has occurred while \output is active [101] Underfull \vbox (badness 10000) has occurred while \output is active [102] [103] [104] [105] [106] [107] [108] Underfull \hbox (badness 4595) in paragraph at lines 6865--6868 []\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h igh-est, for [109] Underfull \hbox (badness 2351) in paragraph at lines 6922--6925 [][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T 1/ptm/m/n/10 , [110] [111] [112] [113] Underfull \hbox (badness 10000) in paragraph at lines 7167--7178 []\T1/zi4/m/n/10 data.frame \T1/ptm/m/n/10 con-verts each of its ar-gu-ments to a data frame by call-ing [114] Underfull \hbox (badness 4479) in paragraph at lines 7239--7248 [][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[] [][] \T1/ptm/m/n/10 (for the col-umn names), Underfull \hbox (badness 2469) in paragraph at lines 7239--7248 [][]\T1/zi4/m/n/10 [.data.frame[][][] \T1/ptm/m/n/10 for sub-set-ting meth-ods, [][]\T1/zi4/m/n/10 Math.data.frame[][][] \T1/ptm/m/n/10 etc, about \T1/ptm/m/i t/10 Group \T1/ptm/m/n/10 meth-ods for [115] [116] [117] [118] [119] [120] [121] [122] [123] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] Underfull \hbox (badness 1394) in paragraph at lines 8773--8778 []\T1/ptm/m/n/10 Subtraction of date-time ob-jects gives an ob-ject of this cla ss, by call-ing \T1/zi4/m/n/10 difftime \T1/ptm/m/n/10 with [139] [140] [141] [142] [143] [144] [145] Underfull \hbox (badness 10000) in paragraph at lines 9216--9220 [][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / IEEE _ 754-[]198 5$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wi ki / IEEE _ [146] [147] [148] [149] [150] [151] Underfull \hbox (badness 2150) in paragraph at lines 9599--9602 []\T1/ptm/m/n/10 logical in-di-cat-ing if du-pli-ca-tion should be con-sid-ered from the re-verse Underfull \hbox (badness 6396) in paragraph at lines 9613--9621 []\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len t method def-i-ni-tions for Underfull \hbox (badness 2409) in paragraph at lines 9654--9660 []\T1/ptm/m/n/10 Except for fac-tors, log-i-cal and raw vec-tors the de-fault \ T1/zi4/m/n/10 nmax = NA \T1/ptm/m/n/10 is equiv-a-lent to [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] Underfull \hbox (badness 4569) in paragraph at lines 10683--10687 []\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been passed as an ar-gu-ment Underfull \hbox (badness 2401) in paragraph at lines 10683--10687 \T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller' s en-vi-ron-ment, i.e., one needs [167] Underfull \vbox (badness 3803) has occurred while \output is active [168] [169] [170] [171] [172] [173] [174] Underfull \hbox (badness 2698) in paragraph at lines 11227--11236 []\T1/ptm/m/n/10 Both \T1/zi4/m/n/10 $ \T1/ptm/m/n/10 and \T1/zi4/m/n/10 [[ \T1 /ptm/m/n/10 can be ap-plied to en-vi-ron-ments. Only char-ac-ter in-dices are a l-lowed Underfull \hbox (badness 4341) in paragraph at lines 11227--11236 \T1/ptm/m/n/10 and no par-tial match-ing is done. The se-man-tics of these op-e r-a-tions are those of [175] [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188] [189] Underfull \hbox (badness 2253) in paragraph at lines 12174--12176 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [190] Underfull \hbox (badness 1565) in paragraph at lines 12235--12239 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/ 10 , and [191] Underfull \hbox (badness 10000) in paragraph at lines 12278--12280 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m /n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with [192] [193] Underfull \hbox (badness 1466) in paragraph at lines 12409--12412 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/ zi4/m/n/10 file.copy \T1/ptm/m/n/10 and [194] Underfull \hbox (badness 10000) in paragraph at lines 12515--12519 [][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [ ][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 12526--12529 [][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Hard _ link$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / [195] [196] [197] [198] Underfull \hbox (badness 3965) in paragraph at lines 12773--12777 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] Underfull \hbox (badness 4429) in paragraph at lines 13481--13484 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] \T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for [210] Underfull \hbox (badness 10000) in paragraph at lines 13567--13569 []\T1/ptm/m/n/10 If you set \T1/zi4/m/n/10 format \T1/ptm/m/n/10 it over-rides the set-ting of \T1/zi4/m/n/10 mode\T1/ptm/m/n/10 , so Underfull \hbox (badness 10000) in paragraph at lines 13573--13577 []\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b ers on the dec-i-mal point, so [211] [212] Underfull \vbox (badness 3803) has occurred while \output is active [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223] Underfull \hbox (badness 1092) in paragraph at lines 14330--14335 [][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t he DLL has been loaded us-ing [224] [225] [226] [227] Underfull \hbox (badness 6741) in paragraph at lines 14578--14582 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \ T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10 , [228] [229] [230] [231] Underfull \hbox (badness 1867) in paragraph at lines 14876--14883 []\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][] [] (or char-ac-ter string for [232] [233] [234] [235] Underfull \vbox (badness 10000) has occurred while \output is active [236] [237] Underfull \hbox (badness 3679) in paragraph at lines 15240--15242 []\T1/ptm/m/n/10 The TRE li-brary of Ville Lau-rikari ([][]$\T1/zi4/m/n/10 http : / / laurikari . net / tre/$[][]\T1/ptm/m/n/10 ) is used ex-cept for [238] [239] [240] [241] [242] [243] Underfull \hbox (badness 1478) in paragraph at lines 15708--15711 []\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [244] [245] [246] [247] [248] [249] [250] [251] [252] [253] [254] Underfull \hbox (badness 1442) in paragraph at lines 16391--16393 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see [255] Underfull \hbox (badness 2452) in paragraph at lines 16483--16499 [][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 , [256] [257] [258] [259] [260] [261] [262] [263] [264] [265] [266] Underfull \hbox (badness 4739) in paragraph at lines 17130--17132 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [267] [268] [269] [270] [271] [272] [273] [274] [275] [276] [277] [278] [279] [280] Underfull \hbox (badness 10000) in paragraph at lines 18012--18016 []\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory Underfull \hbox (badness 2460) in paragraph at lines 18012--18016 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/ 10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T 1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10 ' [281] [282] Underfull \hbox (badness 1014) in paragraph at lines 18165--18170 []\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1 0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if [283] [284] [285] [286] [287] [288] [289] [290] [291] [292] [293] Underfull \hbox (badness 1264) in paragraph at lines 18872--18877 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [294] [295] [296] [297] [298] [299] [300] [301] [302] [303] [304] [305] Underfull \hbox (badness 10000) in paragraph at lines 19606--19608 []\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n /10 has the prop-erty that [306] [307] [308] [309] [310] [311] [312] [313] [314] [315] [316] [317] [318] [319] [320] [321] Underfull \hbox (badness 1655) in paragraph at lines 20594--20600 [][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Data _ compressi on$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-sion, [322] [323] Underfull \hbox (badness 1484) in paragraph at lines 20755--20763 []\T1/ptm/m/n/10 The address-space limit is 2Gb un-der 32-bit Win-dows un-less the OS's de-fault has been [324] [325] [326] [327] [328] Underfull \hbox (badness 2790) in paragraph at lines 21022--21025 []\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s ages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 21022--21025 \T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m es-sages, so can be sup-pressed by [329] [330] [331] [332] [333] [334] Underfull \hbox (badness 10000) in paragraph at lines 21461--21464 []\T1/ptm/m/n/10 It is pos-si-ble to up-date just part of the names at-tribute via the gen-eral rules: Underfull \hbox (badness 10000) in paragraph at lines 21461--21464 \T1/ptm/m/n/10 see the ex-am-ples. This works be-cause the ex-pres-sion there i s eval-u-ated as [335] [336] [337] [338] [339] [340] [341] [342] [343] [344] [345] [346] [347] [348] [349] [350] [351] Underfull \hbox (badness 1199) in paragraph at lines 22508--22514 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 is.numeric \T1/ptm/m/n/ 10 re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 if its ar-gu-ment is of [][]mode [][][] \T1/zi4/m/n/10 "numeric" Underfull \hbox (badness 2027) in paragraph at lines 22508--22514 \T1/ptm/m/n/10 ([][]type[][][] \T1/zi4/m/n/10 "double" \T1/ptm/m/n/10 or type \ T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 ) and not a fac-tor, and \T1/zi4/m/n/10 F ALSE \T1/ptm/m/n/10 oth-er-wise. That is, [352] [353] [354] [355] [356] [357] [358] [359] Underfull \hbox (badness 1038) in paragraph at lines 23037--23046 []\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/ 10 R \T1/ptm/m/n/10 starts up. Ini-tially Underfull \hbox (badness 1881) in paragraph at lines 23047--23050 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 23066--23068 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [360] Underfull \hbox (badness 10000) in paragraph at lines 23130--23139 []\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/zi4/m /n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to Underfull \hbox (badness 2600) in paragraph at lines 23130--23139 \T1/ptm/m/n/10 `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /bin/pager\T1/pt m/m/n/10 ', which se-lects a pager via the \T1/zi4/m/n/10 PAGER \T1/ptm/m/n/10 en-vi-ron-ment vari-able Underfull \hbox (badness 2142) in paragraph at lines 23140--23146 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able Underfull \hbox (badness 1968) in paragraph at lines 23153--23158 []\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 23163--23172 []\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v alue [361] [362] [363] Underfull \hbox (badness 10000) in paragraph at lines 23404--23410 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/ n/10 setRepositories[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 23404--23410 \T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "http://www.bioconductor.org"\ T1/ptm/m/n/10 ' or the Eu-ro-pean mir- Underfull \hbox (badness 10000) in paragraph at lines 23404--23410 \T1/ptm/m/n/10 ror `\T1/zi4/m/n/10 "http://bioconductor.statistik.tu-dortmund.d e"\T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 10000) in paragraph at lines 23416--23419 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][ ][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10 and Underfull \hbox (badness 2689) in paragraph at lines 23441--23443 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see [364] Underfull \hbox (badness 7203) in paragraph at lines 23469--23472 []\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/ n/10 and Underfull \hbox (badness 3128) in paragraph at lines 23479--23485 \T1/ptm/m/n/10 Pos-si-ble val-ues are \T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (t he de-fault ex-cept un-der the CRAN OS X build) Underfull \hbox (badness 1881) in paragraph at lines 23479--23485 \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "mac.binary."\T1/ptm/m/n/10 . Win-dows uses \ T1/zi4/m/n/10 "win.binary"\T1/ptm/m/n/10 . (\T1/zi4/m/n/10 "mac.binary.leopard" \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 23487--23494 []\T1/ptm/m/n/10 URLs of the repos-i-to-ries for use by [][]\T1/zi4/m/n/10 upda te.packages[][][]\T1/ptm/m/n/10 . De-faults to Underfull \hbox (badness 10000) in paragraph at lines 23487--23494 \T1/zi4/m/n/10 c(CRAN="@CRAN@")\T1/ptm/m/n/10 , a value that causes some util-i -ties to prompt for a Underfull \hbox (badness 6380) in paragraph at lines 23487--23494 \T1/ptm/m/n/10 CRAN mir-ror. To avoid this do set the CRAN mir-ror, by some-thi ng like Underfull \hbox (badness 1082) in paragraph at lines 23487--23494 \T1/zi4/m/n/10 local({r <- getOption("repos"); r["CRAN"] <- "http://my.local.cr an"; [365] [366] [367] [368] Underfull \vbox (badness 3803) has occurred while \output is active [369] Underfull \hbox (badness 10000) in paragraph at lines 23795--23799 []\T1/ptm/m/n/10 The outer prod-uct of the ar-rays \T1/zi4/m/n/10 X \T1/ptm/m/n /10 and \T1/zi4/m/n/10 Y \T1/ptm/m/n/10 is the ar-ray \T1/zi4/m/n/10 A \T1/ptm/ m/n/10 with di-men-sion Underfull \hbox (badness 10000) in paragraph at lines 23795--23799 \T1/zi4/m/n/10 c(dim(X), dim(Y)) \T1/ptm/m/n/10 where el-e-ment \T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] [370] [371] [372] [373] [374] Underfull \hbox (badness 1748) in paragraph at lines 24116--24120 \T1/ptm/m/n/10 seem un-de-sir-able, e.g., when past-ing two char-ac-ter vec-tor s, or very de-sir-able, e.g. in [375] [376] [377] [378] [379] [380] [381] [382] Underfull \hbox (badness 2726) in paragraph at lines 24615--24618 []\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di -cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put, see [383] [384] [385] [386] [387] [388] [389] [390] [391] [392] [393] [394] [395] Underfull \hbox (badness 1052) in paragraph at lines 25420--25425 []\T1/zi4/m/n/10 qr.X \T1/ptm/m/n/10 re-turns $\OML/cmm/b/it/10 X$\T1/ptm/m/n/1 0 , the orig-i-nal ma-trix from which the qr ob-ject was con-structed, pro-vide d [396] [397] [398] [399] [400] [401] [402] [403] [404] [405] Underfull \hbox (badness 1533) in paragraph at lines 26125--26128 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [406] [407] [408] [409] [410] [411] [412] [413] [414] [415] [416] [417] [418] [419] [420] [421] [422] [423] [424] [425] [426] [427] [428] [429] [430] [431] Underfull \hbox (badness 10000) in paragraph at lines 27753--27757 []\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n /10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 27753--27757 \T1/zi4/m/n/10 "(?[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t he matches are also re-turned by name. Underfull \hbox (badness 6188) in paragraph at lines 27776--27778 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p ubs . opengroup . org / onlinepubs / 9699919799 / [432] [433] [434] [435] [436] [437] [438] [439] [440] [441] [442] [443] [444] [445] [446] [447] [448] [449] [450] Underfull \hbox (badness 10000) in paragraph at lines 28975--28978 []\T1/zi4/m/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my c ur-rent workspace', i.e., [451] [452] [453] [454] Underfull \hbox (badness 2302) in paragraph at lines 29175--29182 []\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d e-fined as $[]$, Underfull \hbox (badness 2837) in paragraph at lines 29175--29182 \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non -missing Underfull \hbox (badness 2980) in paragraph at lines 29175--29182 \T1/ptm/m/n/10 val-ues. In the case \T1/zi4/m/n/10 center = TRUE\T1/ptm/m/n/10 , this is the same as the stan-dard de-vi-a-tion, Underfull \hbox (badness 2181) in paragraph at lines 29175--29182 \T1/ptm/m/n/10 but in gen-eral it is not. (To scale by the stan-dard de-vi-a-ti ons with-out cen-ter-ing, use [455] [456] Underfull \hbox (badness 2261) in paragraph at lines 29328--29333 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i t ap-plies to all fields; oth-er-wise, if Underfull \hbox (badness 10000) in paragraph at lines 29355--29361 []\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac- ters [457] Underfull \hbox (badness 10000) in paragraph at lines 29428--29433 []\T1/ptm/m/n/10 Note that since \T1/zi4/m/n/10 sep \T1/ptm/m/n/10 is a sep-a-r a-tor and not a ter-mi-na-tor, read-ing a file by [458] [459] [460] [461] [462] [463] [464] [465] [466] [467] [468] [469] [470] [471] [472] [473] [474] [475] [476] [477] [478] [479] [480] [481] [482] [483] [484] [485] [486] [487] [488] [489] [490] [491] [492] [493] [494] [495] [496] [497] [498] [499] [500] Underfull \hbox (badness 1072) in paragraph at lines 32177--32181 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 32182--32186 []\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/ 10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 - -no-init-file\T1/ptm/m/n/10 ', Underfull \hbox (badness 10000) in paragraph at lines 32210--32216 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 32210--32216 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, e.g. Underfull \hbox (badness 3343) in paragraph at lines 32223--32230 \T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 32223--32230 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 32223--32230 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [501] [502] [503] [504] [505] Underfull \hbox (badness 10000) in paragraph at lines 32513--32519 []\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form at \T1/ptm/m/n/10 meth-ods is [506] [507] [508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] [519] [520] [521] [522] [523] [524] [525] [526] [527] [528] Underfull \vbox (badness 10000) has occurred while \output is active [529] [530] Underfull \hbox (badness 4416) in paragraph at lines 34070--34072 []\T1/ptm/m/n/10 Argument \T1/zi4/m/n/10 names \T1/ptm/m/n/10 was in-tro-duced in \T1/phv/m/n/10 R \T1/ptm/m/n/10 2.13.0 to avoid need-ing the com-mon use of [531] Underfull \hbox (badness 3333) in paragraph at lines 34167--34172 []\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi s may need to be matched ex-plic-itly: for ex-am-ple [532] [533] [534] [535] [536] [537] [538] [539] [540] [541] Underfull \hbox (badness 1472) in paragraph at lines 34774--34777 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee p their source in-clud-ing com-ments, see [542] [543] [544] [545] [546] [547] [548] [549] [550] [551] Underfull \hbox (badness 2671) in paragraph at lines 35431--35434 []\T1/ptm/m/n/10 levels to re-move for all fac-tors in \T1/zi4/m/n/10 ...\T1/pt m/m/n/10 . If set to \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 , it im-plies [552] [553] [554] [555] [556] [557] Underfull \hbox (badness 10000) in paragraph at lines 35829--35832 [][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [ ][]$http : / / developer . r-[]project . org / [558] [559] Underfull \hbox (badness 10000) in paragraph at lines 35950--35954 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 getTaskCallbackNames [][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer . [560] Underfull \hbox (badness 10000) in paragraph at lines 36012--36016 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[ ][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer . [561] [562] [563] [564] [565] [566] [567] [568] [569] [570] [571] [572] [573] [574] [575] [576] [577] [578] Underfull \hbox (badness 1990) in paragraph at lines 37137--37145 []\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e r-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 37137--37145 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less [579] [580] [581] [582] Underfull \hbox (badness 1515) in paragraph at lines 37406--37411 []\T1/ptm/m/n/10 On most plat-forms `file' in-cludes sym-bolic links, fi-fos an d sock-ets. Prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 2.15.0 [583] [584] [585] Underfull \hbox (badness 1917) in paragraph at lines 37636--37643 []\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/ ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute [586] [587] [588] [589] [590] [591] [592] [593] [594] Underfull \hbox (badness 3668) in paragraph at lines 38203--38205 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di- ately, even if [595] [596] Underfull \hbox (badness 2401) in paragraph at lines 38304--38308 []\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [597] [598] [599] Underfull \hbox (badness 6542) in paragraph at lines 38481--38486 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m /n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is [600] [601] [602] Underfull \vbox (badness 3803) has occurred while \output is active [603] [604] [605] [606] Underfull \hbox (badness 10000) in paragraph at lines 38909--38914 []\T1/ptm/m/n/10 This is a spe-cial case of rank-ing, but as a less gen-eral fu nc-tion than [][]\T1/zi4/m/n/10 rank[][][] Underfull \hbox (badness 10000) in paragraph at lines 38909--38914 \T1/ptm/m/n/10 is more suit-able to be made generic. The de-fault method is sim -i-lar to [607] Underfull \hbox (badness 5417) in paragraph at lines 38999--39003 []\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [608] Underfull \hbox (badness 10000) in paragraph at lines 39060--39064 []\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard ' reg-exps, in-clud-ing el-e-ments named [609] [610]) (./compiler-pkg.tex Chapter 2. [611] [612] [613] [614]) (./datasets-pkg.tex Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 12--14 []\T1/ptm/m/n/10 This pack-age con-tains a va-ri-ety of datasets. For a com-ple te list, use [615] [616] [617] [618] [619] [620] [621] [622] [623] [624] [625] [626] [627] [628] [629] [630] [631] [632] [633] [634] [635] [636] [637] [638] [639] [640] [641] [642] [643] [644] [645] [646] [647] [648] [649] [650] [651] [652] [653] [654] [655] [656] [657] [658] [659] [660] [661] Underfull \vbox (badness 10000) has occurred while \output is active [662] [663] [664] [665] [666] [667] [668] [669] [670] [671] [672] [673] [674] [675] [676] [677] [678] [679] [680] Underfull \hbox (badness 1325) in paragraph at lines 3873--3876 []\T1/ptm/m/n/10 For back-ground on Bristle-cone pines and Methuse-lah Walk, se e [][]$\T1/zi4/m/n/10 http : / / www . sonic . net / [681] Underfull \vbox (badness 10000) has occurred while \output is active [682] [683] [684] [685] Underfull \vbox (badness 10000) has occurred while \output is active [686] Underfull \vbox (badness 10000) has occurred while \output is active [687] [688] [689] [690] [691] [692] [693] [694]) (./grDevices-pkg.tex Chapter 4. [695] [696] [697] [698] [699] [700] [701] [702] [703] [704] [705] [706] [707] [708] [709] [710] [711] Underfull \hbox (badness 5175) in paragraph at lines 1048--1050 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [712] [713] [714] Underfull \hbox (badness 1852) in paragraph at lines 1245--1248 []\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col- ors that will be used in plot-ting, call-ing [715] [716] [717] Underfull \hbox (badness 1490) in paragraph at lines 1448--1453 \T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\ T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/ 10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and [718] Underfull \hbox (badness 2698) in paragraph at lines 1502--1505 []\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 if the de-vice does not sup-port cap-ture, oth-er-wise a ma-trix of color names (for [719] Underfull \hbox (badness 10000) in paragraph at lines 1571--1575 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , the func-tion also re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 when [720] [721] [722] [723] [724] Underfull \hbox (badness 1033) in paragraph at lines 1854--1867 \T1/zi4/m/n/10 "pgnm"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pgnmraw"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pnm"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pnmraw"\T1/ptm/m/n/10 , \T 1/zi4/m/n/10 "ppm"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "ppmraw"\T1/ptm/m/n/10 , \T1/ zi4/m/n/10 "pkm"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pkmraw"\T1/ptm/m/n/10 , \T1/zi 4/m/n/10 "tiffcrle"\T1/ptm/m/n/10 , Underfull \hbox (badness 3758) in paragraph at lines 1854--1867 \T1/zi4/m/n/10 "tiffg3"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "tiffg32d"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "tiffg4"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "tifflzw"\T1/ptm/m/n/ 10 , \T1/zi4/m/n/10 "tiffpack"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "tiff12nc"\T1/ptm /m/n/10 , \T1/zi4/m/n/10 "tiff24nc"\T1/ptm/m/n/10 , Underfull \hbox (badness 3128) in paragraph at lines 1854--1867 \T1/zi4/m/n/10 "tiff32nc" "psmono"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "psgray"\T1/p tm/m/n/10 , \T1/zi4/m/n/10 "psrgb"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bit"\T1/ptm/ m/n/10 , \T1/zi4/m/n/10 "bitrgb"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bitcmyk"\T1/pt m/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 , Underfull \hbox (badness 1546) in paragraph at lines 1854--1867 \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/1 0 , \T1/zi4/m/n/10 "png16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "png256"\T1/ptm/m/n/1 0 , \T1/zi4/m/n/10 "png16m"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "png48"\T1/ptm/m/n/1 0 , \T1/zi4/m/n/10 "jpeg"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "jpeggray"\T1/ptm/m/n/ 10 , [725] Underfull \hbox (badness 10000) in paragraph at lines 1963--1965 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [726] [727] [728] Underfull \hbox (badness 6758) in paragraph at lines 2115--2118 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [729] [730] [731] [732] [733] [734] [735] [736] Underfull \hbox (badness 10000) in paragraph at lines 2618--2619 [737] [738] [739] [740] [741] [742] [743] Underfull \hbox (badness 1152) in paragraph at lines 3056--3058 []\T1/ptm/m/n/10 A length two in-te-ger vec-tor \T1/zi4/m/n/10 nr, nc \T1/ptm/m /n/10 giv-ing the num-ber of rows and columns, ful-fill-ing [744] [745] [746] [747] [748] Underfull \hbox (badness 2856) in paragraph at lines 3377--3380 []\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv e a C in-te-ger for-mat such as Underfull \hbox (badness 2662) in paragraph at lines 3391--3393 []\T1/ptm/m/n/10 title string to em-bed as the `\T1/zi4/m/n/10 /Title\T1/ptm/m/ n/10 ' field in the file. De-faults to [749] [750] Underfull \hbox (badness 1173) in paragraph at lines 3507--3517 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 paper \T1/ptm/m/n/10 ar-gu-ment sets the `\ T1/zi4/m/n/10 /MediaBox\T1/ptm/m/n/10 ' en-try in the file, which de-faults to \T1/zi4/m/n/10 width \T1/ptm/m/n/10 by [751] [752] [753] [754] [755] [756] [757] Underfull \vbox (badness 10000) has occurred while \output is active [758] [759] Underfull \vbox (badness 3803) has occurred while \output is active [760] [761] Underfull \hbox (badness 1067) in paragraph at lines 4208--4215 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [762] [763] [764] Underfull \hbox (badness 1789) in paragraph at lines 4430--4432 []\T1/ptm/m/n/10 title string to em-bed as the \T1/zi4/m/n/10 Title \T1/ptm/m/n /10 com-ment in the file. De-faults to [765] Underfull \hbox (badness 1377) in paragraph at lines 4480--4485 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues Underfull \hbox (badness 2671) in paragraph at lines 4507--4515 \T1/ptm/m/n/10 For use in this way you will prob-a-bly want to use [][]\T1/zi4/ m/n/10 setEPS[][][]() \T1/ptm/m/n/10 to set the de-faults as [766] Underfull \hbox (badness 1418) in paragraph at lines 4556--4563 \T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4 /m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/ zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm /m/n/10 , Underfull \hbox (badness 2443) in paragraph at lines 4564--4573 \T1/ptm/m/n/10 PostScript de-vice is us-ing URW fonts, you will ob-tain ac-cess to more char-ac-ters and Underfull \hbox (badness 2653) in paragraph at lines 4564--4573 \T1/ptm/m/n/10 more ap-pro-pri-ate met-rics by us-ing these names. To make thes e eas-ier to re-mem-ber, Underfull \hbox (badness 1755) in paragraph at lines 4574--4576 []\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East Asian lan-guages -- see [767] [768] Underfull \hbox (badness 1057) in paragraph at lines 4685--4690 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \ T1/zi4/m/n/10 "rgb"\T1/ptm/m/n/10 ) (which is RGB+gray) and Underfull \hbox (badness 7344) in paragraph at lines 4745--4747 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [769] [770] [771] Underfull \hbox (badness 2035) in paragraph at lines 4869--4878 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 4869--4878 \T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/ n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 4869--4878 \T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 , [772] Underfull \hbox (badness 6775) in paragraph at lines 4936--4944 \T1/ptm/m/n/10 can be found at [][]$\T1/zi4/m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu / chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Underfull \hbox (badness 3000) in paragraph at lines 4936--4944 \T1/ptm/m/n/10 Lunde's CJKV re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly . com / pub / examples / nutshell / cjkv / Underfull \hbox (badness 7344) in paragraph at lines 4955--4957 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [773] [774] Underfull \hbox (badness 1546) in paragraph at lines 5075--5083 []\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T 1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/ n/10 , [775] Underfull \hbox (badness 1648) in paragraph at lines 5152--5156 []\T1/ptm/m/n/10 title for the Quartz win-dow (ap-plies to on-screen out-put on ly), de-fault [776] [777] [778] [779] [780] [781] [782] Underfull \hbox (badness 10000) in paragraph at lines 5569--5572 []\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red /green/blue) into HSV space [783] [784] [785] [786] [787] [788] [789] Underfull \hbox (badness 1189) in paragraph at lines 5965--5967 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [790] Underfull \hbox (badness 10000) in paragraph at lines 6063--6065 []\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK lan-guages and [791] [792] [793] [794] [795] Underfull \hbox (badness 3780) in paragraph at lines 6354--6360 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1 0 "AvantGarde"\T1/ptm/m/n/10 , [796] [797] Underfull \hbox (badness 2680) in paragraph at lines 6550--6552 []\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of [798] [799] [800]) (./graphics-pkg.tex Chapter 5. [801] [802] [803] [804] [805] [806] [807] [808] [809] [810] [811] Underfull \hbox (badness 10000) in paragraph at lines 690--697 []\T1/zi4/m/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/p tm/m/n/10 in-ter-face to the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/pt m/m/n/10 in [812] [813] [814] [815] [816] [817] [818] [819] [820] [821] Underfull \hbox (badness 4634) in paragraph at lines 1253--1256 [][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n /10 , [822] [823] [824] [825] [826] [827] [828] [829] [830] [831] [832] [833] [834] [835] [836] [837] [838] Underfull \hbox (badness 1009) in paragraph at lines 2285--2292 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [839] [840] [841] [842] [843] [844] [845] [846] [847] [848] [849] [850] [851] [852] [853] [854] [855] [856] [857] [858] [859] [860] Underfull \vbox (badness 10000) has occurred while \output is active [861] [862] [863] [864] Underfull \hbox (badness 1867) in paragraph at lines 3911--3915 []\T1/ptm/m/n/10 vector of back-ground (fill) col-ors for the open plot sym-bol s given by [865] [866] [867] [868] [869] [870] [871] [872] Underfull \hbox (badness 1924) in paragraph at lines 4362--4367 []\T1/ptm/m/n/10 a func-tion which in-di-cates what should hap-pen when the dat a con-tain [873] Underfull \hbox (badness 2529) in paragraph at lines 4391--4394 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used: see [874] [875] [876] [877] Underfull \hbox (badness 10000) in paragraph at lines 4735--4741 []\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n /10 (width, height) \T1/ptm/m/n/10 in user co-or-di-nate units. Underfull \hbox (badness 5908) in paragraph at lines 4735--4741 \T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin" ) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that [878] [879] Underfull \hbox (badness 10000) in paragraph at lines 4865--4868 [880 ] Underfull \hbox (badness 10000) in paragraph at lines 4926--4928 Underfull \vbox (badness 10000) has occurred while \output is active [881] [882 ] [883] Underfull \hbox (badness 10000) in paragraph at lines 5119--5121 []\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2 :6\T1/ptm/m/n/10 ) cor-re-spond to [884] [885] [886] [887] [888] Underfull \vbox (badness 10000) has occurred while \output is active [889] [890] [891] [892] [893] [894] [895] [896] [897] [898] [899] [900] [901] [902] [903] [904] [905] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6523--6524 [][] [906 ] [907] [908] [909] [910] [911] [912] [913] [914] [915] [916] [917] Underfull \hbox (badness 1048) in paragraph at lines 7231--7236 \T1/ptm/m/n/10 avoided (see the Warn-ings sec-tion be-low). Split-screen mode i s ex-ited by the com-mand [918] [919] Underfull \hbox (badness 1038) in paragraph at lines 7347--7350 []\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d rawn be-tween the point \T1/zi4/m/n/10 (x0[i], y0[i]) \T1/ptm/m/n/10 and the po int [920] [921] [922] [923] [924] [925] [926] [927] [928] [929] [930] [931] [932] [933] [934] [935] [936] [937] [938] [939] [940] Underfull \hbox (badness 6691) in paragraph at lines 8564--8567 []\T1/ptm/m/n/10 The main ti-tle (on top) us-ing font and size (char-ac-ter ex- pan-sion) Underfull \hbox (badness 2799) in paragraph at lines 8567--8569 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font and size \T1/zi4/m/n/10 par ("font.sub") \T1/ptm/m/n/10 and color [941]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.unit s}) has been already used, duplicate ignored \relax l.8649 \HeaderA{units}{Graphical Units}{units} [942] [943] [944] [945] [946]) (./grid-pkg.tex Chapter 6. Underfull \vbox (badness 10000) has occurred while \output is active [947] [948] [949] [950] [951] [952] [953] Underfull \hbox (badness 2680) in paragraph at lines 405--408 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1 /zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio n of [954] [955] [956] Overfull \vbox (10.43605pt too high) has occurred while \output is active [957] [958] [959] [960] [961] Underfull \hbox (badness 4279) in paragraph at lines 945--954 [][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m /n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 unit[][][]\T1/ptm/m/n/10 , [962] Underfull \vbox (badness 3803) has occurred while \output is active [963] [964] [965] Underfull \hbox (badness 2781) in paragraph at lines 1147--1150 []\T1/ptm/m/n/10 Both func-tions cre-ate an ar-rows grob (a graph-i-cal ob-ject de-scrib-ing ar-rows), but only [966] Underfull \vbox (badness 10000) has occurred while \output is active [967] [968] [969] [970] [971] [972] [973] [974] [975] [976] [977] [978] [979] [980] [981] [982] [983] [984] [985] [986] [987] [988] [989] [990] [991] [992] [993] [994] [995] [996] [997] [998] [999] [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009] [1010] [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020] Underfull \hbox (badness 1067) in paragraph at lines 4358--4361 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1021] [1022] [1023] [1024] Underfull \hbox (badness 7256) in paragraph at lines 4597--4599 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033] [1034] [1035] [1036] [1037] [1038] [1039] [1040] [1041] [1042] [1043] [1044] Underfull \hbox (badness 10000) in paragraph at lines 5804--5810 \T1/ptm/m/n/10 and to spec-ify the min-i-mum or max-i-mum of a list of unit ob- jects (e.g., [1045] [1046] [1047] [1048] [1049] [1050] [1051] [1052] [1053] Underfull \hbox (badness 7649) in paragraph at lines 6266--6269 []\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by do-ing some-thing like [1054] [1055] [1056] [1057]) (./methods-pkg.tex [1058] Chapter 7. [1059] [1060] [1061] [1062] [1063] [1064] [1065] [1066] [1067] [1068] [1069] [1070] [1071] [1072] [1073] [1074] Underfull \vbox (badness 2277) has occurred while \output is active [1075] [1076] [1077] [1078] Underfull \hbox (badness 2237) in paragraph at lines 1432--1434 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \ T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package "\T1/ptm/m/n/10 , also of class [1079] [1080] [1081] [1082] [1083] [1084] [1085] [1086] [1087] Underfull \hbox (badness 10000) in paragraph at lines 2028--2033 []\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c an be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 2028--2033 \T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1 0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the [1088] [1089] [1090] [1091] [1092] [1093] [1094] [1095] Underfull \hbox (badness 10000) in paragraph at lines 2628--2631 []\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o b-jects of class [1096] [1097] Underfull \hbox (badness 1132) in paragraph at lines 2768--2772 []\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1 0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re -turned re-sult is in [1098] Underfull \hbox (badness 1033) in paragraph at lines 2800--2805 \T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store s the [1099] [1100] [1101] [1102] [1103] [1104] [1105] Underfull \hbox (badness 1102) in paragraph at lines 3308--3310 []\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na me of the pack-age (with-out the ex-tra-ne-ous [1106] [1107] [1108] [1109] [1110] Underfull \hbox (badness 10000) in paragraph at lines 3637--3642 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these classes takes spe-cial ar-gu-ments Underfull \hbox (badness 10000) in paragraph at lines 3645--3654 []\T1/ptm/m/n/10 The [1111] [1112] [1113] [1114] [1115] [1116] Underfull \vbox (badness 10000) has occurred while \output is active [1117] [1118] [1119] [1120] [1121] [1122] [1123] [1124] Underfull \hbox (badness 1436) in paragraph at lines 4550--4553 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "SealedMethodDefinition" \T1/ptm/m/n/ 10 is cre-ated by a call to [][]\T1/zi4/m/n/10 setMethod[][][] \T1/ptm/m/n/10 w ith ar-gu-ment Underfull \hbox (badness 1769) in paragraph at lines 4579--4585 []\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4579--4585 \T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T 1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by [1125] [1126] [1127] [1128] [1129] [1130] Underfull \vbox (badness 2111) has occurred while \output is active [1131] [1132] Underfull \vbox (badness 10000) has occurred while \output is active [1133] [1134] Underfull \hbox (badness 1092) in paragraph at lines 5251--5258 \T1/ptm/m/n/10 names cor-re-spond-ing to some or all of the for-mal ar-gu-ments . In the pre-vi-ous ex-am-ple, Underfull \hbox (badness 1117) in paragraph at lines 5251--5258 \T1/ptm/m/n/10 if se-lect-ing class \T1/zi4/m/n/10 "track" \T1/ptm/m/n/10 for \ T1/zi4/m/n/10 x\T1/ptm/m/n/10 , find-ing that the se-lec-tion was an-other meth -ods list and Underfull \hbox (badness 4036) in paragraph at lines 5299--5302 []\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10 the method to use in re-sponse to a [1135] [1136] [1137] [1138] [1139] Underfull \hbox (badness 1087) in paragraph at lines 5619--5624 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1140] [1141] [1142] [1143] Underfull \hbox (badness 2221) in paragraph at lines 5845--5850 []\T1/ptm/m/n/10 Two op-tional method names are in-ter-preted spe-cially, \T1/z i4/m/n/10 initialize \T1/ptm/m/n/10 and [1144] [1145] [1146] [1147] [1148] [1149] [1150] [1151] Underfull \vbox (badness 10000) has occurred while \output is active [1152] [1153]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4} ) has been already used, duplicate ignored \relax l.6703 \aliasA{S4}{S3Part}{S4} [1154] [1155] [1156] [1157]pdfTeX warning (ext4) : destination with the same identifier (name{Rfn.Complex}) has been already use d, duplicate ignored \relax l.6979 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate ignored \relax l.6981 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) has been already used, duplicate igno red \relax l.6982 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination wi th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.6984 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor ed \relax l.6985 \aliasA{Summary}{S4groupGeneric}{Summary} [1158] Underfull \hbox (badness 2050) in paragraph at lines 7046--7050 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1159] [1160] [1161] Underfull \hbox (badness 1286) in paragraph at lines 7229--7231 []\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal ly [1162] [1163] [1164] [1165] [1166] [1167] [1168] [1169] [1170] [1171] [1172] [1173] [1174] [1175] [1176] [1177] [1178] [1179] [1180] [1181] [1182] [1183] Underfull \vbox (badness 10000) has occurred while \output is active [1184] [1185] [1186] [1187] [1188] [1189] [1190] [1191] [1192] [1193] [1194] Underfull \hbox (badness 2894) in paragraph at lines 9562--9566 []\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance in R [][]$\T1/zi4/m/n/10 http : / / stat . stanford . edu / ~jmc4 / [1195] Underfull \hbox (badness 1852) in paragraph at lines 9641--9645 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1196] [1197] [1198] [1199]) (./parallel-pkg.tex [1200] Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 15--17 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4 /m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[ ][][]: see [1201] [1202] [1203] [1204] [1205] [1206] [1207] [1208] [1209] [1210] [1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218] [1219] Underfull \hbox (badness 3386) in paragraph at lines 1221--1224 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R andom.seed \T1/ptm/m/n/10 when the [1220] [1221] [1222]) (./splines-pkg.tex Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1223] [1224] [1225] [1226] [1227] [1228] [1229] [1230] [1231] [1232] [1233] [1234] [1235] [1236] [1237]) (./stats-pkg.tex [1238] Chapter 10. [1239] [1240] [1241] [1242] [1243] [1244] [1245] [1246] [1247] [1248] [1249] [1250] [1251] Underfull \hbox (badness 1412) in paragraph at lines 843--845 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm \T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for [1252] [1253] [1254] [1255] [1256] [1257] [1258] [1259] Underfull \hbox (badness 2503) in paragraph at lines 1327--1330 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1260] [1261] [1262] Underfull \hbox (badness 10000) in paragraph at lines 1506--1510 []\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov", "lm") \T1/ptm/m/n/ 10 or for mul-ti-ple re-sponses of class [1263] [1264] [1265] [1266] [1267] [1268] [1269] [1270] [1271] [1272] [1273] Underfull \hbox (badness 3965) in paragraph at lines 2156--2158 []\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val id for [1274] [1275] [1276] [1277] [1278] Underfull \hbox (badness 3965) in paragraph at lines 2485--2487 []\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val id for [1279] [1280] [1281] [1282] [1283] [1284] [1285] [1286] [1287] [1288] [1289] [1290] Underfull \hbox (badness 2503) in paragraph at lines 3260--3263 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1291] [1292] [1293] [1294] [1295] [1296] [1297] [1298] [1299] [1300] [1301] [1302] [1303] [1304] [1305] [1306] [1307] [1308] [1309] [1310] Underfull \hbox (badness 3989) in paragraph at lines 4482--4489 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1311] [1312] [1313] [1314] [1315] [1316] [1317] [1318] [1319] [1320] Underfull \hbox (badness 2932) in paragraph at lines 5097--5099 []\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se- quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is given by [1321] [1322] [1323] [1324] Underfull \hbox (badness 1142) in paragraph at lines 5338--5350 \T1/ptm/m/n/10 For \T1/zi4/m/n/10 cov()\T1/ptm/m/n/10 , a non-Pearson method is un-usual but avail-able for the sake of com-plete-ness. [1325] [1326] Underfull \hbox (badness 2503) in paragraph at lines 5477--5481 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1327] Underfull \hbox (badness 1168) in paragraph at lines 5538--5543 []\T1/ptm/m/n/10 For Spear-man's test, p-values are com-puted us-ing al-go-rith m AS 89 for $\OML/cmm/m/it/10 n < \OT1/cmr/m/n/10 1290$ \T1/ptm/m/n/10 and [1328] [1329] [1330] [1331] [1332] [1333] [1334] Underfull \hbox (badness 8132) in paragraph at lines 5981--5986 \T1/ptm/m/n/10 then \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is a den-dro-gram of the sa me graph struc-ture as \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and for each node, [1335] [1336] [1337] [1338] [1339] Underfull \hbox (badness 7081) in paragraph at lines 6236--6239 []\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 10000) in paragraph at lines 6240--6242 []\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also [1340] Underfull \vbox (badness 10000) has occurred while \output is active [1341] [1342] [1343] [1344] [1345] [1346] [1347] [1348] [1349] [1350] [1351] Underfull \hbox (badness 10000) in paragraph at lines 7040--7043 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T 1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the [1352] [1353] Underfull \hbox (badness 10000) in paragraph at lines 7177--7180 []\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/zi4/m/n/10 ht tp : / / cran . r-[]project . org / web / views / [1354] [1355] [1356] [1357] Underfull \vbox (badness 3803) has occurred while \output is active [1358] [1359] [1360] [1361] [1362] [1363] [1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] [1377] Underfull \hbox (badness 2626) in paragraph at lines 8629--8632 []\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1378] Underfull \hbox (badness 2503) in paragraph at lines 8729--8733 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1379] [1380] [1381] [1382] [1383] [1384] Overfull \hbox (6.88992pt too wide) in paragraph at lines 9063--9065 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Fligner-Killeen test of homogeneity of variances"\T1/ptm/m/n/10 . [1385] [1386] [1387] [1388] [1389] [1390] [1391] [1392] [1393] [1394] Underfull \hbox (badness 1019) in paragraph at lines 9729--9732 []\T1/ptm/m/n/10 See also [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Incomplete _ gamma _ function$[][]\T1/ptm/m/n/10 , or [][]$\T1/zi4/m/n/ 10 http : / / dlmf . [1395] [1396] [1397] [1398] Underfull \hbox (badness 4518) in paragraph at lines 9990--9995 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1399] [1400] [1401] [1402] [1403] Underfull \hbox (badness 2142) in paragraph at lines 10333--10336 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ Underfull \hbox (badness 1253) in paragraph at lines 10352--10355 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][ ]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it- er-a-tion. Hence, [1404] Underfull \hbox (badness 1708) in paragraph at lines 10414--10417 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1405] [1406] [1407] [1408] [1409] Underfull \hbox (badness 1694) in paragraph at lines 10762--10765 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1410] Underfull \hbox (badness 1867) in paragraph at lines 10781--10790 \T1/ptm/m/n/10 in the row case. If ei-ther is miss-ing, as by de-fault, then th e or-der-ing of the cor-re- [1411] [1412] [1413] [1414] [1415] [1416] [1417]pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.hat}) has been already used, duplicate i gnored \relax l.11228 \aliasA{hat}{influence.measures}{hat} [1418] [1419] Underfull \hbox (badness 1484) in paragraph at lines 11352--11354 []\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1420] [1421] [1422] [1423] [1424] [1425] [1426] [1427] [1428] Underfull \hbox (badness 4441) in paragraph at lines 11899--11901 []\T1/ptm/m/n/10 vector of dif-fer-enc-ing co-ef-fi-cients, so an ARMA model is fit-ted to [1429] [1430] [1431] [1432] [1433] Underfull \hbox (badness 2894) in paragraph at lines 12196--12200 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1434] [1435] [1436] [1437] [1438] [1439] [1440] [1441] [1442] [1443] [1444] Underfull \hbox (badness 4518) in paragraph at lines 12877--12882 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1445] [1446] [1447] [1448] [1449] [1450] [1451] [1452] [1453] [1454] Underfull \hbox (badness 4518) in paragraph at lines 13495--13500 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1455] [1456] [1457] [1458] [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] [1473] Underfull \hbox (badness 2503) in paragraph at lines 14694--14698 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1474] [1475] Underfull \vbox (badness 3803) has occurred while \output is active [1476] [1477] [1478] [1479] [1480] [1481] [1482] Underfull \hbox (badness 1418) in paragraph at lines 15203--15209 []\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response \T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(, "offset") \T1 /ptm/m/n/10 and [1483] [1484] [1485] [1486] [1487] [1488] [1489] [1490] [1491] [1492] [1493] [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504] [1505] Underfull \vbox (badness 3803) has occurred while \output is active [1506] [1507] [1508] Underfull \hbox (badness 2359) in paragraph at lines 16828--16830 []\T1/ptm/m/n/10 Douglas M. Bates and Saikat De-bRoy: David M. Gay for the For- tran code used by [1509] Underfull \vbox (badness 10000) has occurred while \output is active [1510] Underfull \vbox (badness 10000) has occurred while \output is active [1511] [1512] [1513] [1514] [1515] [1516] [1517] [1518] [1519] [1520] [1521] [1522] [1523] Underfull \hbox (badness 1377) in paragraph at lines 17734--17739 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 17739--17742 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 1184) in paragraph at lines 17752--17756 \T1/ptm/m/n/10 value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + reltol ) \T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 17760--17764 []\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \ T1/ptm/m/n/10 meth-ods if [1524] [1525] [1526] Underfull \vbox (badness 10000) has occurred while \output is active [1527] [1528] [1529] [1530] [1531] [1532] [1533] Underfull \hbox (badness 1337) in paragraph at lines 18376--18379 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1534] [1535] [1536] [1537] [1538] [1539] [1540] [1541] [1542] [1543] [1544] [1545] [1546] Underfull \hbox (badness 5563) in paragraph at lines 19103--19105 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , add to al-read y ex-ist-ing plot. Only valid for Underfull \hbox (badness 1194) in paragraph at lines 19106--19109 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1547] [1548] [1549] [1550] [1551] [1552] Underfull \hbox (badness 2503) in paragraph at lines 19478--19481 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1553] Underfull \hbox (badness 10000) in paragraph at lines 19505--19507 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1 /ptm/m/n/10 or [1554] [1555] [1556] [1557] [1558] [1559] [1560] [1561] [1562] [1563] [1564] [1565] [1566] [1567] [1568] Underfull \hbox (badness 10000) in paragraph at lines 20475--20481 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][ ][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 , [1569] [1570] [1571] [1572] [1573] [1574] [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] [1586] [1587] [1588] [1589] [1590] [1591] Underfull \hbox (badness 1337) in paragraph at lines 21781--21787 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1592] [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601] [1602] [1603] Underfull \hbox (badness 10000) in paragraph at lines 22574--22577 []\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by [1604] [1605] [1606] [1607] [1608] [1609] [1610] [1611] [1612] [1613] Underfull \hbox (badness 10000) in paragraph at lines 23150--23153 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run med(x, k) \T1/ptm/m/n/10 sim-ply has Underfull \hbox (badness 3690) in paragraph at lines 23201--23205 [][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's end point rule and is called by de-fault from [1614] [1615] [1616] [1617] [1618] Underfull \hbox (badness 7667) in paragraph at lines 23467--23469 []\T1/ptm/m/n/10 a nu-meric vec-tor or an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-je ct which is co-ercible to one by [1619] [1620] [1621] [1622] Underfull \hbox (badness 3439) in paragraph at lines 23676--23682 [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSasympO rig[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSbiexp[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 SSfol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSfpl[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 SSgompertz[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 SSlogis[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSmicmen[][][]\T1/ptm/m/n/1 0 , [1623] [1624] [1625] [1626] [1627] [1628] [1629] [1630] [1631] [1632] [1633] [1634] [1635] [1636] [1637] [1638] [1639] [1640] [1641] [1642] [1643] [1644] [1645] Underfull \vbox (badness 10000) has occurred while \output is active [1646] Underfull \hbox (badness 3514) in paragraph at lines 25217--25222 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1647] Underfull \hbox (badness 3514) in paragraph at lines 25279--25284 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1648] Underfull \hbox (badness 3514) in paragraph at lines 25336--25341 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1649] Underfull \hbox (badness 3514) in paragraph at lines 25397--25403 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1650] [1651] [1652] [1653] Underfull \hbox (badness 3514) in paragraph at lines 25592--25597 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion Underfull \hbox (badness 3514) in paragraph at lines 25648--25653 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1654] Underfull \hbox (badness 3514) in paragraph at lines 25705--25710 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1655] Underfull \hbox (badness 3514) in paragraph at lines 25760--25765 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1656] [1657] Underfull \hbox (badness 6691) in paragraph at lines 25829--25834 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p tm/m/n/10 . It is the value of the ex-pres-sion [1658] [1659] [1660] [1661] [1662] [1663] [1664] [1665] Underfull \hbox (badness 10000) in paragraph at lines 26342--26345 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex- Underfull \hbox (badness 10000) in paragraph at lines 26342--26345 \T1/ptm/m/n/10 trac-tion, which should be odd. If \T1/zi4/m/n/10 NULL\T1/ptm/m/ n/10 , the de-fault, [1666] [1667] [1668] [1669] [1670] [1671] [1672] [1673] [1674] [1675] Underfull \hbox (badness 5431) in paragraph at lines 26948--26950 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1676] [1677] [1678] [1679] Underfull \hbox (badness 5431) in paragraph at lines 27158--27161 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1680] [1681] [1682] [1683] [1684] Underfull \hbox (badness 1337) in paragraph at lines 27469--27473 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1685] [1686] Underfull \hbox (badness 10000) in paragraph at lines 27586--27589 []\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/ 10 ; cur-rently ex-cept for \T1/zi4/m/n/10 rt()\T1/ptm/m/n/10 , only for [1687] [1688] [1689] Underfull \hbox (badness 1616) in paragraph at lines 27769--27772 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1690] [1691] [1692] [1693] [1694] [1695] [1696] [1697] [1698] [1699] [1700] [1701] [1702] [1703] [1704] [1705] [1706] [1707] [1708] [1709] [1710] [1711] [1712] Underfull \hbox (badness 1337) in paragraph at lines 29169--29173 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1713] [1714] [1715] [1716] [1717] [1718] [1719] [1720] Underfull \hbox (badness 1337) in paragraph at lines 29653--29657 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1721] Underfull \hbox (badness 5161) in paragraph at lines 29746--29748 []\T1/ptm/m/n/10 an es-ti-mate of the lo-ca-tion pa-ram-e-ter. (Only present if ar-gu-ment [1722] [1723] [1724] [1725] [1726] [1727] Underfull \hbox (badness 10000) in paragraph at lines 30110--30115 []\T1/ptm/m/n/10 There is a \T1/zi4/m/n/10 summary \T1/ptm/m/n/10 method for co n-tin-gency ta-ble ob-jects cre-ated by \T1/zi4/m/n/10 table \T1/ptm/m/n/10 or [1728] [1729] [1730]) (./stats4-pkg.tex Chapter 11. [1731] [1732] [1733] [1734] [1735] [1736]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup licate ignored \relax l.407 ...Package \pkg{stats4}}{show.Rdash.methods} [1737] [1738] [1739] [1740]) (./tcltk-pkg.tex Chapter 12. [1741] [1742] [1743] [1744] [1745] [1746] [1747] Underfull \vbox (badness 10000) has occurred while \output is active [1748] Underfull \vbox (badness 10000) has occurred while \output is active [1749] Underfull \hbox (badness 1546) in paragraph at lines 649--656 []\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing any Tk or Tcl com-mand by sim-ply run-ning [1750] [1751] [1752] [1753] Underfull \vbox (badness 10000) has occurred while \output is active [1754] [1755] [1756] [1757] [1758] [1759] [1760] Underfull \hbox (badness 3375) in paragraph at lines 1390--1393 [][][]\T1/zi4/m/n/10 select.list[][][] \T1/ptm/m/n/10 (a text ver-sion ex-cept on Win-dows and the OS X GUI), [][]\T1/zi4/m/n/10 menu[][][] \T1/ptm/m/n/10 (wh ose [1761]) (./tools-pkg.tex [1762] Chapter 13. [1763] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1764] Underfull \hbox (badness 3039) in paragraph at lines 164--167 []\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1765] [1766] Underfull \hbox (badness 1308) in paragraph at lines 285--298 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 285--298 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 formatMastersthesis\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm /m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma tTechreport \T1/ptm/m/n/10 and [1767] [1768] [1769] Underfull \hbox (badness 2080) in paragraph at lines 449--454 \T1/ptm/m/n/10 ac-ters. It is sorted by Uni-code point and within a point al-ph a-bet-i-cally on the glyph Underfull \hbox (badness 2644) in paragraph at lines 449--454 \T1/ptm/m/n/10 (there can be more than one name for a Uni-code point). The data are in the file [1770] [1771] [1772] [1773] [1774] Overfull \vbox (3.73149pt too high) has occurred while \output is active [1775] [1776] [1777] [1778] Underfull \hbox (badness 1635) in paragraph at lines 962--964 []\T1/ptm/m/n/10 Delete files in the tem-po-rary di-rec-tory? This op-tion is i g-nored when [1779] Underfull \hbox (badness 4441) in paragraph at lines 1036--1044 \T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe n-den-cies (de- Underfull \hbox (badness 1014) in paragraph at lines 1056--1058 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies [1780] Underfull \hbox (badness 10000) in paragraph at lines 1079--1082 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1079--1082 \T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 , [1781] [1782] Underfull \hbox (badness 10000) in paragraph at lines 1207--1209 []\T1/ptm/m/n/10 Re-save PDF files (es-pe-cially vi-gnettes) more com-pactly. S up-port func-tion for [1783] [1784] Underfull \hbox (badness 7981) in paragraph at lines 1378--1382 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1785] Underfull \hbox (badness 1082) in paragraph at lines 1384--1386 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see [1786] [1787] [1788] [1789] Underfull \hbox (badness 5726) in paragraph at lines 1651--1656 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/n/10 De pendsList \T1/ptm/m/n/10 ob-ject Underfull \hbox (badness 7221) in paragraph at lines 1651--1656 \T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo r in-stance if there was [1790] [1791] [1792] [1793] [1794] [1795] [1796] Underfull \hbox (badness 7981) in paragraph at lines 2025--2031 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1797] [1798] [1799] [1800] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/n' instead on input line 2279. [1801] [1802] [1803] Underfull \hbox (badness 1424) in paragraph at lines 2516--2518 []\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t or of links, as re-turned by [1804] [1805] [1806] [1807] [1808] [1809] [1810] [1811] [1812] Underfull \hbox (badness 1675) in paragraph at lines 3035--3037 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing how the news en-tries shoul d be \T1/ptm/m/it/10 chopped\T1/ptm/m/n/10 ; [1813] [1814] [1815] [1816] [1817] [1818] [1819] [1820] [1821] Underfull \hbox (badness 1838) in paragraph at lines 3587--3593 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 3587--3593 \T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [1822] [1823] Underfull \hbox (badness 5726) in paragraph at lines 3667--3672 []\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/sl/10 TR UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/sl/10 DependsList \T1/ptm/m/n/10 ob-ject Underfull \hbox (badness 7221) in paragraph at lines 3667--3672 \T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo r in-stance if there was [1824] [1825] Underfull \hbox (badness 1688) in paragraph at lines 3805--3817 []\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to be used in the `\T 1/zi4/m/sl/10 PACKAGES\T1/ptm/m/n/10 ' and [1826] [1827] [1828] [1829]) (./utils-pkg.tex [1830] Chapter 14. [1831] Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ', [1832] [1833] Underfull \hbox (badness 1454) in paragraph at lines 197--200 []\T1/ptm/m/n/10 logical in-di-cat-ing if the search should be case-insensitive , \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 by de- Underfull \hbox (badness 1540) in paragraph at lines 213--216 []\T1/zi4/m/sl/10 find \T1/ptm/m/n/10 is a dif-fer-ent user in-ter-face for the same task as \T1/zi4/m/sl/10 apropos\T1/ptm/m/n/10 . How-ever, by de-fault [1834] [1835] [1836] [1837] [1838] [1839] Underfull \hbox (badness 10000) in paragraph at lines 538--544 []\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1 0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 538--544 \T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the [1840] Underfull \hbox (badness 5847) in paragraph at lines 649--655 []\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to se-lect which of the pack-ages on the repos-i-to- Underfull \hbox (badness 4229) in paragraph at lines 649--655 \T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi 4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as [1841] Underfull \hbox (badness 3861) in paragraph at lines 714--719 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/ 10 "License_is_FOSS"\T1/ptm/m/n/10 , [1842] [1843] [1844] [1845] [1846] [1847] [1848] [1849] [1850] Underfull \hbox (badness 1371) in paragraph at lines 1290--1292 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [1851] [1852] [1853] [1854] Underfull \hbox (badness 2057) in paragraph at lines 1562--1564 []\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th is func-tion is in-voked for its side ef-fect of up-dat-ing [1855] [1856] [1857] Underfull \hbox (badness 5189) in paragraph at lines 1747--1749 []\T1/ptm/m/n/10 A list of keys that have been pre-vi-ously cited, to be used w hen [1858] [1859] [1860] [1861] Underfull \hbox (badness 1661) in paragraph at lines 1962--1969 []\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sim-pli-fied to an [][]\T1/zi4/m/sl/10 array[][][] \T1/ptm/m/n/10 (typ-i- Underfull \hbox (badness 1990) in paragraph at lines 1974--1977 []\T1/ptm/m/n/10 a [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4 /m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m /n/10 ar-gu-ment above. In the lat-ter case, the iden-tity [1862] [1863] [1864] [1865] [1866] [1867] [1868] [1869] [1870] [1871] [1872] [1873] [1874] [1875] [1876] Underfull \hbox (badness 1430) in paragraph at lines 2953--2959 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the \T1/zi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the Underfull \hbox (badness 2837) in paragraph at lines 2953--2959 \T1/zi4/m/sl/10 internet.info \T1/ptm/m/n/10 op-tion. The de-tails de-pend on t he plat-form and scheme, but set-ting [1877] Underfull \hbox (badness 1231) in paragraph at lines 2997--3003 []\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers via en-vi-ron-ment vari-able [1878] [1879] [1880] [1881] [1882] [1883] [1884] [1885] [1886] [1887] [1888] [1889]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.for mat}) has been already used, duplicate ignored \relax l.3763 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.format.1}) has been already used, dupl icate ignored \relax l.3763 ...mat Unordered and Ordered Lists}{format} [1890] [1891] [1892] [1893] [1894] [1895] [1896] [1897] [1898] [1899] [1900] [1901] [1902] [1903] [1904] Underfull \hbox (badness 1371) in paragraph at lines 4667--4669 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [1905] Underfull \hbox (badness 1502) in paragraph at lines 4756--4761 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 4756--4761 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [1906] [1907] [1908] Underfull \hbox (badness 10000) in paragraph at lines 4920--4929 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, [1909] [1910] Underfull \hbox (badness 3118) in paragraph at lines 5036--5038 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [1911] Underfull \hbox (badness 1082) in paragraph at lines 5118--5124 []\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 repos = NULL\T1/ptm/m/n/10 , a char-ac-ter vec-tor of file paths of `\T1/zi4/m/sl/10 .tar.gz\T1/ptm/m/n/10 ' files. [1912] Underfull \hbox (badness 1348) in paragraph at lines 5164--5169 []\T1/ptm/m/n/10 logical in-di-cat-ing to also in-stall unin-stalled pack-ages which these pack- Underfull \hbox (badness 3884) in paragraph at lines 5164--5169 \T1/ptm/m/n/10 ages de-pend on/link to/import/suggest (and so on re-cur-sively) . Not Underfull \hbox (badness 1466) in paragraph at lines 5164--5169 \T1/ptm/m/n/10 used if \T1/zi4/m/sl/10 repos = NULL\T1/ptm/m/n/10 . Can also be a char-ac-ter vec-tor, a sub-set of Underfull \hbox (badness 10000) in paragraph at lines 5219--5222 []\T1/ptm/m/n/10 (not used on Win-dows) anal-o-gous to \T1/zi4/m/sl/10 configur e.args \T1/ptm/m/n/10 for flag [1913] Underfull \hbox (badness 10000) in paragraph at lines 5245--5248 []\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to be passed Underfull \hbox (badness 10000) in paragraph at lines 5245--5248 \T1/ptm/m/n/10 to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a source pac k-age in-stall. E.g., [1914] Underfull \hbox (badness 10000) in paragraph at lines 5375--5380 [][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/ 10 , [1915] [1916] [1917] [1918] [1919] [1920] [1921] [1922] [1923] [1924] [1925] [1926] [1927] [1928] [1929] [1930] [1931] [1932] [1933] Underfull \hbox (badness 10000) in paragraph at lines 6529--6531 []\T1/zi4/m/sl/10 packageVersion() \T1/ptm/m/n/10 is a con-ve-nience short-cut, al-low-ing things like Underfull \hbox (badness 2310) in paragraph at lines 6534--6539 []\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [1934] [1935] [1936] Underfull \hbox (badness 10000) in paragraph at lines 6691--6694 []\T1/ptm/m/n/10 a data frame with columns as the \T1/ptm/m/it/10 ma-trix \T1/p tm/m/n/10 re-turned by Underfull \hbox (badness 10000) in paragraph at lines 6691--6694 [][]\T1/zi4/m/sl/10 available.packages[][][] \T1/ptm/m/n/10 plus \T1/zi4/m/sl/1 0 "Status"\T1/ptm/m/n/10 , a fac-tor with lev-els [1937] [1938] [1939] [1940] [1941] [1942] Underfull \hbox (badness 1789) in paragraph at lines 7072--7074 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [1943] [1944] [1945] [1946] [1947] [1948] [1949] [1950] [1951] [1952] [1953] [1954] Underfull \hbox (badness 1097) in paragraph at lines 7871--7874 []\T1/ptm/m/n/10 The name \T1/zi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b e used on Win-dows, in which case [1955] [1956] Underfull \hbox (badness 3000) in paragraph at lines 7999--8004 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 read.t able[][][]\T1/ptm/m/n/10 ; [1957] [1958] [1959] [1960] [1961] [1962] [1963] [1964] Underfull \hbox (badness 2134) in paragraph at lines 8561--8566 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 write. table[][][]\T1/ptm/m/n/10 ; [1965] [1966] [1967] [1968] [1969] [1970] [1971] [1972] [1973] [1974] [1975] [1976] [1977] [1978] [1979] [1980] Underfull \hbox (badness 10000) in paragraph at lines 9504--9506 [][][]$\T1/zi4/m/sl/10 http : / / en . wikipedia . org / wiki / Ctags$[][]\T1/p tm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / www . gnu . org / software / emacs / [1981] [1982] Underfull \hbox (badness 10000) in paragraph at lines 9682--9686 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n ow taken from the en-vi-ron-ment vari-able [1983] Underfull \hbox (badness 10000) in paragraph at lines 9713--9719 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a [1984] Underfull \hbox (badness 2096) in paragraph at lines 9827--9830 []\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing whether PNG fig-ures should be gen-er-ated. Ig-nored if Underfull \hbox (badness 1527) in paragraph at lines 9831--9834 []\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing whether JPEG fig-ures should be gen-er-ated. Ig-nored if [1985] Underfull \hbox (badness 1009) in paragraph at lines 9898--9909 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If [1986] [1987] [1988] [1989] [1990] Underfull \hbox (badness 2635) in paragraph at lines 10204--10207 []\T1/ptm/m/n/10 Repository `\T1/zi4/m/sl/10 CRAN\T1/ptm/m/n/10 ' is treated sp e-cially: the value is taken from the cur-rent set-ting of [1991] [1992] [1993] [1994] [1995] [1996] Underfull \hbox (badness 5970) in paragraph at lines 10572--10575 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive Underfull \hbox (badness 3449) in paragraph at lines 10583--10592 []\T1/ptm/m/n/10 string in-di-cat-ing if the \T1/zi4/m/sl/10 width \T1/ptm/m/n/ 10 ar-gu-ment's spec-i-fi-ca-tion should be fol- Underfull \hbox (badness 2512) in paragraph at lines 10583--10592 \T1/ptm/m/n/10 lowed strictly, one of the val-ues \T1/zi4/m/sl/10 c("no", "cut" , "wrap")\T1/ptm/m/n/10 . De- Underfull \hbox (badness 1824) in paragraph at lines 10583--10592 \T1/ptm/m/n/10 faults to the \T1/zi4/m/sl/10 strict.width \T1/ptm/m/n/10 com-po -nent of op-tion \T1/zi4/m/sl/10 "str" \T1/ptm/m/n/10 (see [][]\T1/zi4/m/sl/10 options[][][]\T1/ptm/m/n/10 ) Underfull \hbox (badness 3769) in paragraph at lines 10583--10592 \T1/ptm/m/n/10 which de-faults to \T1/zi4/m/sl/10 "no" \T1/ptm/m/n/10 for back com-pat-i-bil-ity rea-sons; \T1/zi4/m/sl/10 "wrap" \T1/ptm/m/n/10 uses [1997] [1998] [1999] Underfull \hbox (badness 10000) in paragraph at lines 10751--10753 []\T1/ptm/m/n/10 Options other than \T1/zi4/m/sl/10 memory = "none" \T1/ptm/m/n /10 ap-ply only to files pro-duced by [2000] [2001] [2002] [2003] [2004] [2005] Underfull \hbox (badness 10000) in paragraph at lines 11146--11149 [][][]$\T1/zi4/m/sl/10 http : / / en . wikipedia . org / wiki / Tar _ (file _ f ormat)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / pubs . opengroup . org / Underfull \hbox (badness 2245) in paragraph at lines 11146--11149 \T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9 2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX [2006] [2007] [2008] [2009] [2010] [2011] [2012] [2013] Underfull \hbox (badness 10000) in paragraph at lines 11651--11653 []\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/sl/10 destdir \T1/ptm/m/n/10 and \ T1/zi4/m/sl/10 dependencies \T1/ptm/m/n/10 to be passed to [2014] Underfull \hbox (badness 1052) in paragraph at lines 11654--11656 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. See Underfull \hbox (badness 10000) in paragraph at lines 11684--11689 []\T1/ptm/m/n/10 For how the list of suit-able avail-able pack-ages is de-ter-m ined see Underfull \hbox (badness 10000) in paragraph at lines 11684--11689 [][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 . \T1/zi4/m/sl/10 av ailable = NULL \T1/ptm/m/n/10 make a call to Underfull \hbox (badness 10000) in paragraph at lines 11713--11716 [][][]\T1/zi4/m/sl/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.package s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n /10 , [2015] [2016] [2017] [2018] [2019] [2020] Underfull \hbox (badness 1454) in paragraph at lines 12019--12023 []\T1/ptm/m/n/10 the char-ac-ter(s) to print at the end of each line (row). For ex-am-ple, [2021] Underfull \hbox (badness 10000) in paragraph at lines 12089--12091 []\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec- tion e.g. [2022] [2023] [2024]) (./fullrefman.ind [2025] [2026] [2027] [2028] [2029] [2030] [2031] [2032] [2033] [2034] [2035] [2036] [2037] [2038] [2039] [2040] [2041] [2042] [2043] [2044] [2045] [2046] [2047] [2048] [2049] [2050] [2051] [2052] [2053] [2054] [2055] [2056] [2057] [2058] [2059] [2060] [2061] [2062] [2063] [2064] [2065] [2066] [2067] [2068] [2069] [2070] [2071] [2072] [2073] [2074] [2075] [2076] [2077] [2078] [2079] [2080] [2081] [2082] [2083] Overfull \hbox (5.8567pt too wide) in paragraph at lines 10807--10809 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_depends Overfull \hbox (5.8567pt too wide) in paragraph at lines 10809--10811 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_results Overfull \hbox (5.8567pt too wide) in paragraph at lines 10811--10813 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_timings [2084] [2085] [2086] [2087] [2088] [2089] [2090] [2091] [2092]) (./fullrefman.aux) LaTeX Font Warning: Some font shapes were not available, defaults substituted. ) (see the transcript file for additional information)pdfTeX warning (dest): name {Rfn.write.matrix} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.dgTMatrix} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.sparseMatrix} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.glht} has been referenced but does not exist, r eplaced by a fixed one pdfTeX warning (dest): name{Rfn.survreg} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.coxph} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.stepAIC} has been referenced but does not exist , replaced by a fixed 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has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.chron} has been referenced but does not exist, replaced by a fixed one {/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc}{/usr/share/texlive/ texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}{/usr/share/texlive/texmf-dis t/fonts/enc/dvips/inconsolata/i4-t1-0.enc}< /usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb> Output written on fullrefman.pdf (2123 pages, 5599273 bytes). Transcript written on fullrefman.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-FAQ.texi This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013/Debian) restricted \write18 enabled. entering extended mode (/build/buildd/r-base-3.0.2/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2013-02-01.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (/usr/share/texmf/tex/texinfo/txi-en.tex) [1{/var/lib/texmf/fonts/map/pdftex/up dmap/pdftex.map}] [-1] Chapter 1 Cross reference values unknown; you must run TeX again. Chapter 2 [1] [2] [3] [4] [5] [6] [7] [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] Chapter 4 [18] [19] Chapter 5 [20] [21] [22] [23] [24] Chapter 6 [25] [26] Chapter 7 [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] Chapter 8 [42] Chapter 9 [43] [44] Chapter 10 [45] [46] ) Output written on R-FAQ.pdf (48 pages, 363193 bytes). Transcript written on R-FAQ.log. This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013/Debian) restricted \write18 enabled. entering extended mode (/build/buildd/r-base-3.0.2/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2013-02-01.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-FAQ.aux) (/usr/share/texmf/tex/texinfo/txi-en.tex) [1{/var/lib/texmf/fonts/map/pdftex/up dmap/pdftex.map}] (./R-FAQ.toc [-1] [-2]) [-3] (./R-FAQ.toc) (./R-FAQ.toc) Chapter 1 Chapter 2 [1] [2] [3] [4] [5] [6] [7] [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] Chapter 4 [18] [19] Chapter 5 [20] [21] [22] [23] [24] Chapter 6 [25] [26] Chapter 7 [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] Chapter 8 [42] Chapter 9 [43] [44] Chapter 10 [45] [46] ) Output written on R-FAQ.pdf (50 pages, 379267 bytes). Transcript written on R-FAQ.log. This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013/Debian) restricted \write18 enabled. entering extended mode (/build/buildd/r-base-3.0.2/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2013-02-01.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-FAQ.aux) (/usr/share/texmf/tex/texinfo/txi-en.tex) [1{/var/lib/texmf/fonts/map/pdftex/up dmap/pdftex.map}] (./R-FAQ.toc [-1] [-2]) [-3] (./R-FAQ.toc) (./R-FAQ.toc) Chapter 1 Chapter 2 [1] [2] [3] [4] [5] [6] [7] [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] Chapter 4 [18] [19] Chapter 5 [20] [21] [22] [23] [24] Chapter 6 [25] [26] Chapter 7 [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] Chapter 8 [42] Chapter 9 [43] [44] Chapter 10 [45] [46] ) Output written on R-FAQ.pdf (50 pages, 379267 bytes). Transcript written on R-FAQ.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-admin.texi This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013/Debian) restricted \write18 enabled. entering extended mode (/build/buildd/r-base-3.0.2/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2013-02-01.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 [1] Chapter 2 [2] Cross reference values unknown; you must run TeX again. [3] [4] [5] [6] [7] [8] [9] Chapter 3 [10] [11] [12] Underfull \hbox (badness 10000) in paragraph at lines 1170--1174 []@textrm Running @texttt make[] @textrm in @textttsl R_HOME@texttt /src/gnuwin 32/bitmap[] @textrm or @texttt make bitmapdll[] @textrm in Underfull \hbox (badness 10000) in paragraph at lines 1170--1174 @textttsl R_HOME@texttt /src/gnuwin32[] @textrm should build @texttt Rbitmap.dl l[] @textrm and in-stall it un-der @textttsl R_ [13] [14] [15] Chapter 4 [16] [17] Chapter 5 [18] Chapter 6 [19] Overfull \hbox (14.94176pt too wide) in paragraph at lines 1664--1664 []@texttt [1] "datasets" "utils" "grDevices" "graphics" "stats" "met hods"[] [20] [21] Underfull \hbox (badness 6842) in paragraph at lines 1851--1860 []@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age s. No ad-di- [22] [23] [24] [25] Overfull \hbox (20.69044pt too wide) in paragraph at lines 2202--2202 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl lib-dir @text tt --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] [26] Overfull \hbox (20.69044pt too wide) in paragraph at lines 2222--2222 []@texttt .../bin/i386/Rcmd check -l @textttsl lib-dir @texttt --extra-arch -- install=check:@textttsl pkg@texttt .log @textttsl pkg[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 2223--2223 []@texttt .../bin/x64/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --i nstall=check:@textttsl pkg@texttt .log @textttsl pkg[] Chapter 7 [27] [28] [29] Chapter 8 [30] Chapter 9 [31] [32] [33] Appendix A [34] [35] [36] [37] [38] [39] [40] [41] Overfull \hbox (26.43913pt too wide) in paragraph at lines 3406--3406 []@texttt ln -s /opt/acml5.1.0/gfortran64_mp/lib/libacml_mp.so @textttsl R_HOM E@texttt /lib/libRblas.so[] [42] [43] Appendix B [44] [45] [46] [47] [48] [49] Appendix C [50] [51] [52] [53] [54] [55] [56] [57] Underfull \hbox (badness 10000) in paragraph at lines 4510--4515 []@textrm To see what com-pat-i-ble ver-sions of Java are cur-rently in-stalled , run Overfull \hbox (43.6852pt too wide) in paragraph at lines 4533--4533 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/1.6.0_43-b01-447.jdk/Con tents/Home[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 4538--4538 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/jdk1.7.0_17.jdk/Contents /Home[] [58] [59] Overfull \hbox (14.94176pt too wide) in paragraph at lines 4678--4678 []@texttt PKG_CONFIG_PATH=/opt/csw/lib/sparcv9/pkgconfig:/usr/lib/sparcv9/pkgc onfig[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 4685--4685 []@texttt JAVA_CPPFLAGS="-I${JAVA_HOME}/../include -I${JAVA_HOME}/../include/s olaris"[] [60] [61] [62] [63] [64] [65] Appendix D [66] [67] [68] (Function and variable index) [69] (Concept index) [70] (Environment variable index) [71] [72] ) (see the transcript file for additional information) Output written on R-admin.pdf (75 pages, 429209 bytes). Transcript written on R-admin.log. This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013/Debian) restricted \write18 enabled. entering extended mode (/build/buildd/r-base-3.0.2/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2013-02-01.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-admin.aux) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-admin.toc [-1] [-2]) [-3] [-4] (./R-admin.toc) (./R-admin.toc) Chapter 1 [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] Chapter 3 [10] [11] [12] Underfull \hbox (badness 10000) in paragraph at lines 1170--1174 []@textrm Running @texttt make[] @textrm in @textttsl R_HOME@texttt /src/gnuwin 32/bitmap[] @textrm or @texttt make bitmapdll[] @textrm in Underfull \hbox (badness 10000) in paragraph at lines 1170--1174 @textttsl R_HOME@texttt /src/gnuwin32[] @textrm should build @texttt Rbitmap.dl l[] @textrm and in-stall it un-der @textttsl R_ [13] [14] [15] Chapter 4 [16] [17] Chapter 5 [18] Chapter 6 [19] Overfull \hbox (14.94176pt too wide) in paragraph at lines 1664--1664 []@texttt [1] "datasets" "utils" "grDevices" "graphics" "stats" "met hods"[] [20] [21] Underfull \hbox (badness 6842) in paragraph at lines 1851--1860 []@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age s. No ad-di- [22] [23] [24] [25] Overfull \hbox (20.69044pt too wide) in paragraph at lines 2202--2202 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl lib-dir @text tt --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] [26] Overfull \hbox (20.69044pt too wide) in paragraph at lines 2222--2222 []@texttt .../bin/i386/Rcmd check -l @textttsl lib-dir @texttt --extra-arch -- install=check:@textttsl pkg@texttt .log @textttsl pkg[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 2223--2223 []@texttt .../bin/x64/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --i nstall=check:@textttsl pkg@texttt .log @textttsl pkg[] Chapter 7 [27] [28] [29] Chapter 8 [30] Chapter 9 [31] [32] [33] Appendix A [34] [35] [36] [37] [38] [39] [40] [41] Overfull \hbox (26.43913pt too wide) in paragraph at lines 3406--3406 []@texttt ln -s /opt/acml5.1.0/gfortran64_mp/lib/libacml_mp.so @textttsl R_HOM E@texttt /lib/libRblas.so[] [42] [43] Appendix B [44] [45] [46] [47] [48] [49] Appendix C [50] [51] [52] [53] [54] [55] [56] [57] Underfull \hbox (badness 10000) in paragraph at lines 4510--4515 []@textrm To see what com-pat-i-ble ver-sions of Java are cur-rently in-stalled , run Overfull \hbox (43.6852pt too wide) in paragraph at lines 4533--4533 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/1.6.0_43-b01-447.jdk/Con tents/Home[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 4538--4538 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/jdk1.7.0_17.jdk/Contents /Home[] [58] [59] Overfull \hbox (14.94176pt too wide) in paragraph at lines 4678--4678 []@texttt PKG_CONFIG_PATH=/opt/csw/lib/sparcv9/pkgconfig:/usr/lib/sparcv9/pkgc onfig[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 4685--4685 []@texttt JAVA_CPPFLAGS="-I${JAVA_HOME}/../include -I${JAVA_HOME}/../include/s olaris"[] [60] [61] [62] [63] [64] [65] Appendix D [66] [67] [68] (Function and variable index) [69] (./R-admin.vrs) (Concept index) [70] (./R-admin.cps) (Environment variable index) [71] (./R-admin.ens) [72] ) (see the transcript file for additional information) Output written on R-admin.pdf (78 pages, 476057 bytes). Transcript written on R-admin.log. This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013/Debian) restricted \write18 enabled. entering extended mode (/build/buildd/r-base-3.0.2/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2013-02-01.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-admin.aux) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-admin.toc [-1] [-2]) [-3] [-4] (./R-admin.toc) (./R-admin.toc) Chapter 1 [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] Chapter 3 [10] [11] [12] Underfull \hbox (badness 10000) in paragraph at lines 1170--1174 []@textrm Running @texttt make[] @textrm in @textttsl R_HOME@texttt /src/gnuwin 32/bitmap[] @textrm or @texttt make bitmapdll[] @textrm in Underfull \hbox (badness 10000) in paragraph at lines 1170--1174 @textttsl R_HOME@texttt /src/gnuwin32[] @textrm should build @texttt Rbitmap.dl l[] @textrm and in-stall it un-der @textttsl R_ [13] [14] [15] Chapter 4 [16] [17] Chapter 5 [18] Chapter 6 [19] Overfull \hbox (14.94176pt too wide) in paragraph at lines 1664--1664 []@texttt [1] "datasets" "utils" "grDevices" "graphics" "stats" "met hods"[] [20] [21] Underfull \hbox (badness 6842) in paragraph at lines 1851--1860 []@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age s. No ad-di- [22] [23] [24] [25] Overfull \hbox (20.69044pt too wide) in paragraph at lines 2202--2202 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl lib-dir @text tt --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] [26] Overfull \hbox (20.69044pt too wide) in paragraph at lines 2222--2222 []@texttt .../bin/i386/Rcmd check -l @textttsl lib-dir @texttt --extra-arch -- install=check:@textttsl pkg@texttt .log @textttsl pkg[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 2223--2223 []@texttt .../bin/x64/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --i nstall=check:@textttsl pkg@texttt .log @textttsl pkg[] Chapter 7 [27] [28] [29] Chapter 8 [30] Chapter 9 [31] [32] [33] Appendix A [34] [35] [36] [37] [38] [39] [40] [41] Overfull \hbox (26.43913pt too wide) in paragraph at lines 3406--3406 []@texttt ln -s /opt/acml5.1.0/gfortran64_mp/lib/libacml_mp.so @textttsl R_HOM E@texttt /lib/libRblas.so[] [42] [43] Appendix B [44] [45] [46] [47] [48] [49] Appendix C [50] [51] [52] [53] [54] [55] [56] [57] Underfull \hbox (badness 10000) in paragraph at lines 4510--4515 []@textrm To see what com-pat-i-ble ver-sions of Java are cur-rently in-stalled , run Overfull \hbox (43.6852pt too wide) in paragraph at lines 4533--4533 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/1.6.0_43-b01-447.jdk/Con tents/Home[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 4538--4538 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/jdk1.7.0_17.jdk/Contents /Home[] [58] [59] Overfull \hbox (14.94176pt too wide) in paragraph at lines 4678--4678 []@texttt PKG_CONFIG_PATH=/opt/csw/lib/sparcv9/pkgconfig:/usr/lib/sparcv9/pkgc onfig[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 4685--4685 []@texttt JAVA_CPPFLAGS="-I${JAVA_HOME}/../include -I${JAVA_HOME}/../include/s olaris"[] [60] [61] [62] [63] [64] [65] Appendix D [66] [67] [68] (Function and variable index) [69] (./R-admin.vrs) (Concept index) [70] (./R-admin.cps) (Environment variable index) [71] (./R-admin.ens) [72] ) (see the transcript file for additional information) Output written on R-admin.pdf (78 pages, 476057 bytes). Transcript written on R-admin.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-data.texi This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013/Debian) restricted \write18 enabled. entering extended mode (/build/buildd/r-base-3.0.2/doc/manual/R-data.t2d/pdf/xtr/R-data.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2013-02-01.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Acknowledgements) Overfull \hbox (8.53186pt too wide) in paragraph at lines 89--89 [][]@textbf dataframes2xls[][]| Overfull \hbox (2.70708pt too wide) in paragraph at lines 100--100 [][]@textbf RPostgreSQL[][]| Overfull \hbox (2.49414pt too wide) in paragraph at lines 107--107 [][]@textbf xlsReadWrite[][]| Chapter 1 [1] Cross reference values unknown; you must run TeX again. [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13] [14] Chapter 4 [15] [16] [17] [18] [19] [20] [21] Chapter 5 [22] Chapter 6 [23] Chapter 7 [24] [25] [26] [27] [28] Chapter 8 [29] Chapter 9 [30] Appendix A [31] (Function and variable index) [32] (Concept index) [33] [34] ) (see the transcript file for additional information) Output written on R-data.pdf (37 pages, 269669 bytes). Transcript written on R-data.log. This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013/Debian) restricted \write18 enabled. entering extended mode (/build/buildd/r-base-3.0.2/doc/manual/R-data.t2d/pdf/xtr/R-data.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2013-02-01.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-data.aux ) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-data.toc [-1]) [-2] (./R-data.toc) (./R-data.toc) (Acknowledgements) Overfull \hbox (8.53186pt too wide) in paragraph at lines 89--89 [][]@textbf dataframes2xls[][]| Overfull \hbox (2.70708pt too wide) in paragraph at lines 100--100 [][]@textbf RPostgreSQL[][]| Overfull \hbox (2.49414pt too wide) in paragraph at lines 107--107 [][]@textbf xlsReadWrite[][]| Chapter 1 [1] [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13] [14] Chapter 4 [15] [16] [17] [18] [19] [20] [21] Chapter 5 [22] Chapter 6 [23] Chapter 7 [24] [25] [26] [27] [28] Chapter 8 [29] Chapter 9 [30] Appendix A [31] (Function and variable index) [32] (./R-data.vrs [33]) (Concept index) [34] (./R-data.cps) [35] ) (see the transcript file for additional information) Output written on R-data.pdf (39 pages, 310019 bytes). Transcript written on R-data.log. This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013/Debian) restricted \write18 enabled. entering extended mode (/build/buildd/r-base-3.0.2/doc/manual/R-data.t2d/pdf/xtr/R-data.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2013-02-01.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-data.aux ) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-data.toc [-1]) [-2] (./R-data.toc) (./R-data.toc) (Acknowledgements) Overfull \hbox (8.53186pt too wide) in paragraph at lines 89--89 [][]@textbf dataframes2xls[][]| Overfull \hbox (2.70708pt too wide) in paragraph at lines 100--100 [][]@textbf RPostgreSQL[][]| Overfull \hbox (2.49414pt too wide) in paragraph at lines 107--107 [][]@textbf xlsReadWrite[][]| Chapter 1 [1] [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13] [14] Chapter 4 [15] [16] [17] [18] [19] [20] [21] Chapter 5 [22] Chapter 6 [23] Chapter 7 [24] [25] [26] [27] [28] Chapter 8 [29] Chapter 9 [30] Appendix A [31] (Function and variable index) [32] (./R-data.vrs [33]) (Concept index) [34] (./R-data.cps) [35] ) (see the transcript file for additional information) Output written on R-data.pdf (39 pages, 310035 bytes). Transcript written on R-data.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-exts.texi This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013/Debian) restricted \write18 enabled. entering extended mode (/build/buildd/r-base-3.0.2/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2013-02-01.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Acknowledgements) Chapter 1 [1] Cross reference values unknown; you must run TeX again. [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] Overfull \hbox (14.94176pt too wide) in paragraph at lines 1711--1711 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF LAGS)[] [22] [23] [24] [25] Overfull \hbox (67.78206pt too wide) in paragraph at lines 1986--1986 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (53.60722pt too wide) in paragraph at lines 1988--1988 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [26] [27] Overfull \hbox (16.92342pt too wide) in paragraph at lines 2127--2127 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar e defined.[] [28] Overfull \hbox (2.98494pt too wide) in paragraph at lines 2232--2234 [][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v er-sions such as @smalltt ~/.R/check.Renviron.i386[] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] Overfull \hbox (14.94176pt too wide) in paragraph at lines 3954--3954 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@ euro"[] [51] [52] Overfull \hbox (13.62822pt too wide) in paragraph at lines 4167--4167 []@texttt #define dngettext(pkg, String, StringP, N) (N > 1 ? StringP : String )[] [53] [54] [55] Chapter 2 [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] [66] [67] [68] Underfull \hbox (badness 10000) in paragraph at lines 5378--5385 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [69] [70] [71] [72] [73] [74] Chapter 3 [75] [76] [77] [78] [79] [80] [81] Chapter 4 [82] [83] [84] Overfull \hbox (14.94176pt too wide) in paragraph at lines 6506--6506 []@texttt evaluation nested too deeply: infinite recursion / options(expressio ns=)?[] [85] Overfull \hbox (25.25755pt too wide) in paragraph at lines 6546--6546 []@smalltt Message: Error: no valid set of coefficients has been found: pleas e supply starting values[] [86] Overfull \hbox (20.53261pt too wide) in paragraph at lines 6650--6650 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star t, etastart = etastart,[] Overfull \hbox (38.96663pt too wide) in paragraph at lines 6680--6689 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. @texttt debug(stats:::predict.Arima)[]@textrm . [87] [88] [89] [90] Overfull \hbox (72.42863pt too wide) in paragraph at lines 6985--6985 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [91] Overfull \hbox (14.94176pt too wide) in paragraph at lines 7026--7026 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl assi,[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 7029--7029 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t( cu)),[] [92] Overfull \hbox (26.43913pt too wide) in paragraph at lines 7107--7107 []@texttt #5 0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9 698f98,[] [93] [94] Chapter 5 [95] [96] [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] Overfull \hbox (60.93126pt too wide) in paragraph at lines 8264--8264 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath -Wl,"$(PKGB_PATH)$(R_A RCH)" -lpackB[] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9024--9024 [] @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL SE");[] [118] Underfull \hbox (badness 10000) in paragraph at lines 9085--9087 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [119] [120] [121] [122] [123] [124] [125] [126] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9710--9710 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9715--9715 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9716--9716 [] @texttt par = PROTECT(findVar(install(CHAR(STRING_ELT(theta, i))), r ho));[] [127] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9770--9770 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9780--9780 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9781--9781 [] @texttt par = PROTECT(findVar(install(CHAR(STRING_ELT(theta, i))), r ho));[] [128] Overfull \hbox (26.43913pt too wide) in paragraph at lines 9879--9879 [] @texttt cmdexpr = PROTECT(R_ParseVector(cmdSexp, -1, &status, R_NilV alue));[] [129] [130] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10005--10005 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one xit);[] [131] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10082--10082 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [132] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10165--10165 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_SYMBOL, CE_ANY} cety pe_t;[] [133] Chapter 6 [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] Chapter 7 [153] [154] Chapter 8 [155] [156] [157] Overfull \hbox (43.6852pt too wide) in paragraph at lines 12080--12080 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [158] Overfull \hbox (20.69044pt too wide) in paragraph at lines 12112--12112 []@texttt extern int (*ptr_R_ReadConsole)(const char *, unsigned char *, int, int);[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 12128--12128 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [159] [160] [161] Underfull \hbox (badness 10000) in paragraph at lines 12371--12378 @texttt modules/internet/nanoftp.c[]@textrm , @texttt src/modules/internet/nan ohttp.c[] @textrm and @texttt src/ [162] [163] [164] [165] [166] [167] (Function and variable index) [168] (Concept index) [169] [170] kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+3/600 --dpi 603 ecrm1095 mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; 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Output written on ecrm1095.603gf (256 characters, 55528 bytes). Transcript written on ecrm1095.log. mktexpk: /home/buildd/.texmf-var/fonts/pk/ljfour/jknappen/ec/ecrm1095.603pk: successfully generated. ) (see the transcript file for additional information) Output written on R-exts.pdf (173 pages, 775512 bytes). Transcript written on R-exts.log. This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013/Debian) restricted \write18 enabled. entering extended mode (/build/buildd/r-base-3.0.2/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2013-02-01.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-exts.aux ) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-exts.toc [-1] [-2] [-3]) [-4] [-5] (./R-exts.toc) (./R-exts.toc) (Acknowledgements) Chapter 1 [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] Overfull \hbox (14.94176pt too wide) in paragraph at lines 1711--1711 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF LAGS)[] [22] [23] [24] [25] Overfull \hbox (67.78206pt too wide) in paragraph at lines 1986--1986 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (53.60722pt too wide) in paragraph at lines 1988--1988 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [26] [27] Overfull \hbox (16.92342pt too wide) in paragraph at lines 2127--2127 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar e defined.[] [28] Overfull \hbox (2.98494pt too wide) in paragraph at lines 2232--2234 [][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v er-sions such as @smalltt ~/.R/check.Renviron.i386[] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] Overfull \hbox (14.94176pt too wide) in paragraph at lines 3954--3954 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@ euro"[] [51] [52] Overfull \hbox (13.62822pt too wide) in paragraph at lines 4167--4167 []@texttt #define dngettext(pkg, String, StringP, N) (N > 1 ? StringP : String )[] [53] [54] [55] Chapter 2 [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] [66] [67] [68] Underfull \hbox (badness 10000) in paragraph at lines 5378--5385 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [69] [70] [71] [72] [73] [74] Chapter 3 [75] [76] [77] [78] [79] [80] [81] Chapter 4 [82] [83] [84] Overfull \hbox (14.94176pt too wide) in paragraph at lines 6506--6506 []@texttt evaluation nested too deeply: infinite recursion / options(expressio ns=)?[] [85] Overfull \hbox (25.25755pt too wide) in paragraph at lines 6546--6546 []@smalltt Message: Error: no valid set of coefficients has been found: pleas e supply starting values[] [86] Overfull \hbox (20.53261pt too wide) in paragraph at lines 6650--6650 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star t, etastart = etastart,[] Overfull \hbox (38.96663pt too wide) in paragraph at lines 6680--6689 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. @texttt debug(stats:::predict.Arima)[]@textrm . [87] [88] [89] [90] Overfull \hbox (72.42863pt too wide) in paragraph at lines 6985--6985 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [91] Overfull \hbox (14.94176pt too wide) in paragraph at lines 7026--7026 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl assi,[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 7029--7029 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t( cu)),[] [92] Overfull \hbox (26.43913pt too wide) in paragraph at lines 7107--7107 []@texttt #5 0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9 698f98,[] [93] [94] Chapter 5 [95] [96] [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] Overfull \hbox (60.93126pt too wide) in paragraph at lines 8264--8264 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath -Wl,"$(PKGB_PATH)$(R_A RCH)" -lpackB[] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9024--9024 [] @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL SE");[] [118] Underfull \hbox (badness 10000) in paragraph at lines 9085--9087 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [119] [120] [121] [122] [123] [124] [125] [126] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9710--9710 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9715--9715 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9716--9716 [] @texttt par = PROTECT(findVar(install(CHAR(STRING_ELT(theta, i))), r ho));[] [127] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9770--9770 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9780--9780 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9781--9781 [] @texttt par = PROTECT(findVar(install(CHAR(STRING_ELT(theta, i))), r ho));[] [128] Overfull \hbox (26.43913pt too wide) in paragraph at lines 9879--9879 [] @texttt cmdexpr = PROTECT(R_ParseVector(cmdSexp, -1, &status, R_NilV alue));[] [129] [130] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10005--10005 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one xit);[] [131] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10082--10082 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [132] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10165--10165 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_SYMBOL, CE_ANY} cety pe_t;[] [133] Chapter 6 [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] Chapter 7 [152] [153] Chapter 8 [154] [155] [156] Overfull \hbox (43.6852pt too wide) in paragraph at lines 12080--12080 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [157] Overfull \hbox (20.69044pt too wide) in paragraph at lines 12112--12112 []@texttt extern int (*ptr_R_ReadConsole)(const char *, unsigned char *, int, int);[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 12128--12128 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [158] [159] [160] Underfull \hbox (badness 10000) in paragraph at lines 12371--12378 @texttt modules/internet/nanoftp.c[]@textrm , @texttt src/modules/internet/nan ohttp.c[] @textrm and @texttt src/ [161] [162] [163] [164] [165] [166] (Function and variable index) [167] (./R-exts.vrs [168] [169]) (Concept index) [170] (./R-exts.cps [171]) [172] ) (see the transcript file for additional information) Output written on R-exts.pdf (179 pages, 835828 bytes). Transcript written on R-exts.log. This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013/Debian) restricted \write18 enabled. entering extended mode (/build/buildd/r-base-3.0.2/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2013-02-01.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-exts.aux ) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-exts.toc [-1] [-2] [-3]) [-4] [-5] (./R-exts.toc) (./R-exts.toc) (Acknowledgements) Chapter 1 [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] Overfull \hbox (14.94176pt too wide) in paragraph at lines 1711--1711 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF LAGS)[] [22] [23] [24] [25] Overfull \hbox (67.78206pt too wide) in paragraph at lines 1986--1986 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (53.60722pt too wide) in paragraph at lines 1988--1988 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [26] [27] Overfull \hbox (16.92342pt too wide) in paragraph at lines 2127--2127 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar e defined.[] [28] Overfull \hbox (2.98494pt too wide) in paragraph at lines 2232--2234 [][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v er-sions such as @smalltt ~/.R/check.Renviron.i386[] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] Overfull \hbox (14.94176pt too wide) in paragraph at lines 3954--3954 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@ euro"[] [51] [52] Overfull \hbox (13.62822pt too wide) in paragraph at lines 4167--4167 []@texttt #define dngettext(pkg, String, StringP, N) (N > 1 ? StringP : String )[] [53] [54] [55] Chapter 2 [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] [66] [67] [68] Underfull \hbox (badness 10000) in paragraph at lines 5378--5385 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [69] [70] [71] [72] [73] [74] Chapter 3 [75] [76] [77] [78] [79] [80] [81] Chapter 4 [82] [83] [84] Overfull \hbox (14.94176pt too wide) in paragraph at lines 6506--6506 []@texttt evaluation nested too deeply: infinite recursion / options(expressio ns=)?[] [85] Overfull \hbox (25.25755pt too wide) in paragraph at lines 6546--6546 []@smalltt Message: Error: no valid set of coefficients has been found: pleas e supply starting values[] [86] Overfull \hbox (20.53261pt too wide) in paragraph at lines 6650--6650 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star t, etastart = etastart,[] Overfull \hbox (38.96663pt too wide) in paragraph at lines 6680--6689 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. @texttt debug(stats:::predict.Arima)[]@textrm . [87] [88] [89] [90] Overfull \hbox (72.42863pt too wide) in paragraph at lines 6985--6985 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [91] Overfull \hbox (14.94176pt too wide) in paragraph at lines 7026--7026 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl assi,[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 7029--7029 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t( cu)),[] [92] Overfull \hbox (26.43913pt too wide) in paragraph at lines 7107--7107 []@texttt #5 0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9 698f98,[] [93] [94] Chapter 5 [95] [96] [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] Overfull \hbox (60.93126pt too wide) in paragraph at lines 8264--8264 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath -Wl,"$(PKGB_PATH)$(R_A RCH)" -lpackB[] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9024--9024 [] @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL SE");[] [118] Underfull \hbox (badness 10000) in paragraph at lines 9085--9087 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [119] [120] [121] [122] [123] [124] [125] [126] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9710--9710 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9715--9715 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9716--9716 [] @texttt par = PROTECT(findVar(install(CHAR(STRING_ELT(theta, i))), r ho));[] [127] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9770--9770 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9780--9780 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9781--9781 [] @texttt par = PROTECT(findVar(install(CHAR(STRING_ELT(theta, i))), r ho));[] [128] Overfull \hbox (26.43913pt too wide) in paragraph at lines 9879--9879 [] @texttt cmdexpr = PROTECT(R_ParseVector(cmdSexp, -1, &status, R_NilV alue));[] [129] [130] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10005--10005 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one xit);[] [131] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10082--10082 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [132] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10165--10165 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_SYMBOL, CE_ANY} cety pe_t;[] [133] Chapter 6 [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] Chapter 7 [152] [153] Chapter 8 [154] [155] [156] Overfull \hbox (43.6852pt too wide) in paragraph at lines 12080--12080 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [157] Overfull \hbox (20.69044pt too wide) in paragraph at lines 12112--12112 []@texttt extern int (*ptr_R_ReadConsole)(const char *, unsigned char *, int, int);[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 12128--12128 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [158] [159] [160] Underfull \hbox (badness 10000) in paragraph at lines 12371--12378 @texttt modules/internet/nanoftp.c[]@textrm , @texttt src/modules/internet/nan ohttp.c[] @textrm and @texttt src/ [161] [162] [163] [164] [165] [166] (Function and variable index) [167] (./R-exts.vrs [168] [169]) (Concept index) [170] (./R-exts.cps [171]) [172] ) (see the transcript file for additional information) Output written on R-exts.pdf (179 pages, 836105 bytes). Transcript written on R-exts.log. This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013/Debian) restricted \write18 enabled. entering extended mode (/build/buildd/r-base-3.0.2/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2013-02-01.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-exts.aux ) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-exts.toc [-1] [-2] [-3]) [-4] [-5] (./R-exts.toc) (./R-exts.toc) (Acknowledgements) Chapter 1 [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] Overfull \hbox (14.94176pt too wide) in paragraph at lines 1711--1711 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF LAGS)[] [22] [23] [24] [25] Overfull \hbox (67.78206pt too wide) in paragraph at lines 1986--1986 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (53.60722pt too wide) in paragraph at lines 1988--1988 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [26] [27] Overfull \hbox (16.92342pt too wide) in paragraph at lines 2127--2127 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar e defined.[] [28] Overfull \hbox (2.98494pt too wide) in paragraph at lines 2232--2234 [][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v er-sions such as @smalltt ~/.R/check.Renviron.i386[] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] Overfull \hbox (14.94176pt too wide) in paragraph at lines 3954--3954 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@ euro"[] [51] [52] Overfull \hbox (13.62822pt too wide) in paragraph at lines 4167--4167 []@texttt #define dngettext(pkg, String, StringP, N) (N > 1 ? StringP : String )[] [53] [54] [55] Chapter 2 [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] [66] [67] [68] Underfull \hbox (badness 10000) in paragraph at lines 5378--5385 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [69] [70] [71] [72] [73] [74] Chapter 3 [75] [76] [77] [78] [79] [80] [81] Chapter 4 [82] [83] [84] Overfull \hbox (14.94176pt too wide) in paragraph at lines 6506--6506 []@texttt evaluation nested too deeply: infinite recursion / options(expressio ns=)?[] [85] Overfull \hbox (25.25755pt too wide) in paragraph at lines 6546--6546 []@smalltt Message: Error: no valid set of coefficients has been found: pleas e supply starting values[] [86] Overfull \hbox (20.53261pt too wide) in paragraph at lines 6650--6650 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star t, etastart = etastart,[] Overfull \hbox (38.96663pt too wide) in paragraph at lines 6680--6689 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. @texttt debug(stats:::predict.Arima)[]@textrm . [87] [88] [89] [90] Overfull \hbox (72.42863pt too wide) in paragraph at lines 6985--6985 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [91] Overfull \hbox (14.94176pt too wide) in paragraph at lines 7026--7026 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl assi,[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 7029--7029 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t( cu)),[] [92] Overfull \hbox (26.43913pt too wide) in paragraph at lines 7107--7107 []@texttt #5 0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9 698f98,[] [93] [94] Chapter 5 [95] [96] [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] Overfull \hbox (60.93126pt too wide) in paragraph at lines 8264--8264 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath -Wl,"$(PKGB_PATH)$(R_A RCH)" -lpackB[] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9024--9024 [] @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL SE");[] [118] Underfull \hbox (badness 10000) in paragraph at lines 9085--9087 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [119] [120] [121] [122] [123] [124] [125] [126] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9710--9710 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9715--9715 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9716--9716 [] @texttt par = PROTECT(findVar(install(CHAR(STRING_ELT(theta, i))), r ho));[] [127] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9770--9770 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9780--9780 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9781--9781 [] @texttt par = PROTECT(findVar(install(CHAR(STRING_ELT(theta, i))), r ho));[] [128] Overfull \hbox (26.43913pt too wide) in paragraph at lines 9879--9879 [] @texttt cmdexpr = PROTECT(R_ParseVector(cmdSexp, -1, &status, R_NilV alue));[] [129] [130] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10005--10005 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one xit);[] [131] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10082--10082 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [132] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10165--10165 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_SYMBOL, CE_ANY} cety pe_t;[] [133] Chapter 6 [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] Chapter 7 [152] [153] Chapter 8 [154] [155] [156] Overfull \hbox (43.6852pt too wide) in paragraph at lines 12080--12080 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [157] Overfull \hbox (20.69044pt too wide) in paragraph at lines 12112--12112 []@texttt extern int (*ptr_R_ReadConsole)(const char *, unsigned char *, int, int);[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 12128--12128 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [158] [159] [160] Underfull \hbox (badness 10000) in paragraph at lines 12371--12378 @texttt modules/internet/nanoftp.c[]@textrm , @texttt src/modules/internet/nan ohttp.c[] @textrm and @texttt src/ [161] [162] [163] [164] [165] [166] (Function and variable index) [167] (./R-exts.vrs [168] [169]) (Concept index) [170] (./R-exts.cps [171]) [172] ) (see the transcript file for additional information) Output written on R-exts.pdf (179 pages, 836105 bytes). Transcript written on R-exts.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-intro.texi This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013/Debian) restricted \write18 enabled. entering extended mode (/build/buildd/r-base-3.0.2/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2013-02-01.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Preface) Cross reference values unknown; you must run TeX again. Chapter 1 [1] [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] Chapter 6 [27] [28] [29] [30] Chapter 7 [31] [32] [33] Chapter 8 [34] [35] [36] <./images/hist.pdf> <./images/ecdf.pdf> [37] <./images/QQ.pdf> [38] <./images/ice.pdf> [39] [40] Chapter 9 [41] [42] Chapter 10 [43] [44] [45] [46] [47] [48] [49] [50] [51] Chapter 11 [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] Chapter 12 [66] [67] [68] [69] [70] Overfull \hbox (26.43913pt too wide) in paragraph at lines 5739--5739 []@texttt > text(x, y, expression(paste(bgroup("(", atop(n, x), ")"), p^x, q^{ n-x})))[] [71] [72] [73] [74] [75] <./images/fig11.pdf> [76] <./images/fig12.pdf> [77] [78] [79] [80] Chapter 13 [81] Underfull \hbox (badness 10000) in paragraph at lines 6445--6450 []@textrm Users con-nected to the In-ter-net can use the @texttt install.packag es()[] @textrm and [82] Chapter 14 [83] [84] Underfull \hbox (badness 10000) in paragraph at lines 6646--6651 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and [85] Appendix A [86] [87] [88] [89] Appendix B [90] [91] [92] [93] [94] [95] [96] [97] Appendix C [98] [99] Appendix D [100] Appendix E [101] Appendix F [102] [103] ) (see the transcript file for additional information) Output written on R-intro.pdf (106 pages, 583310 bytes). Transcript written on R-intro.log. This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013/Debian) restricted \write18 enabled. entering extended mode (/build/buildd/r-base-3.0.2/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2013-02-01.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-intro.aux) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-intro.toc [-1] [-2] [-3]) [-4] (./R-intro.toc) (./R-intro.toc) (Preface) Chapter 1 [1] [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] Chapter 6 [27] [28] [29] [30] Chapter 7 [31] [32] [33] Chapter 8 [34] [35] [36] <./images/hist.pdf> <./images/ecdf.pdf> [37] <./images/QQ.pdf> [38] <./images/ice.pdf> [39] [40] Chapter 9 [41] [42] Chapter 10 [43] [44] [45] [46] [47] [48] [49] [50] [51] Chapter 11 [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] Chapter 12 [66] [67] [68] [69] [70] Overfull \hbox (26.43913pt too wide) in paragraph at lines 5739--5739 []@texttt > text(x, y, expression(paste(bgroup("(", atop(n, x), ")"), p^x, q^{ n-x})))[] [71] [72] [73] [74] [75] <./images/fig11.pdf> [76] <./images/fig12.pdf> [77] [78] [79] [80] Chapter 13 [81] Underfull \hbox (badness 10000) in paragraph at lines 6445--6450 []@textrm Users con-nected to the In-ter-net can use the @texttt install.packag es()[] @textrm and [82] Chapter 14 [83] [84] Underfull \hbox (badness 10000) in paragraph at lines 6646--6651 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and [85] Appendix A [86] [87] [88] [89] Appendix B [90] [91] [92] [93] [94] [95] [96] [97] Appendix C [98] [99] Appendix D [100] (./R-intro.vrs [101] [102]) Appendix E [103] (./R-intro.cps [104]) Appendix F [105] [106] ) (see the transcript file for additional information) < /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pfb> Output written on R-intro.pdf (112 pages, 633456 bytes). Transcript written on R-intro.log. This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013/Debian) restricted \write18 enabled. entering extended mode (/build/buildd/r-base-3.0.2/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2013-02-01.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-intro.aux) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-intro.toc [-1] [-2] [-3]) [-4] (./R-intro.toc) (./R-intro.toc) (Preface) Chapter 1 [1] [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] Chapter 6 [27] [28] [29] [30] Chapter 7 [31] [32] [33] Chapter 8 [34] [35] [36] <./images/hist.pdf> <./images/ecdf.pdf> [37] <./images/QQ.pdf> [38] <./images/ice.pdf> [39] [40] Chapter 9 [41] [42] Chapter 10 [43] [44] [45] [46] [47] [48] [49] [50] [51] Chapter 11 [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] Chapter 12 [66] [67] [68] [69] [70] Overfull \hbox (26.43913pt too wide) in paragraph at lines 5739--5739 []@texttt > text(x, y, expression(paste(bgroup("(", atop(n, x), ")"), p^x, q^{ n-x})))[] [71] [72] [73] [74] [75] <./images/fig11.pdf> [76] <./images/fig12.pdf> [77] [78] [79] [80] Chapter 13 [81] Underfull \hbox (badness 10000) in paragraph at lines 6445--6450 []@textrm Users con-nected to the In-ter-net can use the @texttt install.packag es()[] @textrm and [82] Chapter 14 [83] [84] Underfull \hbox (badness 10000) in paragraph at lines 6646--6651 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and [85] Appendix A [86] [87] [88] [89] Appendix B [90] [91] [92] [93] [94] [95] [96] [97] Appendix C [98] [99] Appendix D [100] (./R-intro.vrs [101] [102]) Appendix E [103] (./R-intro.cps [104]) Appendix F [105] [106] ) (see the transcript file for additional information) < /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pfb> Output written on R-intro.pdf (112 pages, 633439 bytes). Transcript written on R-intro.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-ints.texi This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013/Debian) restricted \write18 enabled. entering extended mode (/build/buildd/r-base-3.0.2/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2013-02-01.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] Chapter 2 [24] Overfull \hbox (26.43913pt too wide) in paragraph at lines 1960--1960 [] @texttt if (!is.character(x)) x <- structure(as.character(x), names = na mes(x))[] [25] [26] [27] [28] Chapter 3 [29] [30] Chapter 4 [31] [32] Chapter 5 [33] Chapter 6 [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] Chapter 7 [46] [47] Underfull \hbox (badness 10000) in paragraph at lines 3600--3609 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, Underfull \hbox (badness 10000) in paragraph at lines 3600--3609 @texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib/libR.dyl ib[]@textrm , [48] Chapter 8 [49] [50] [51] [52] [53] Underfull \hbox (badness 10000) in paragraph at lines 3965--3973 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa tchArgs = FALSE[] @textrm and [54] Chapter 9 [55] [56] Chapter 10 [57] Chapter 11 [58] Chapter 12 [59] [60] (Function and variable index) [61] (Concept index) [62] [63] ) (see the transcript file for additional information) Output written on R-ints.pdf (66 pages, 378424 bytes). Transcript written on R-ints.log. This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013/Debian) restricted \write18 enabled. entering extended mode (/build/buildd/r-base-3.0.2/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2013-02-01.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-ints.aux ) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-ints.toc [-1]) [-2] [-3] (./R-ints.toc) (./R-ints.toc) Chapter 1 [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] Chapter 2 [24] Overfull \hbox (26.43913pt too wide) in paragraph at lines 1960--1960 [] @texttt if (!is.character(x)) x <- structure(as.character(x), names = na mes(x))[] [25] [26] [27] [28] Chapter 3 [29] [30] Chapter 4 [31] [32] Chapter 5 [33] Chapter 6 [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] Chapter 7 [46] [47] Underfull \hbox (badness 10000) in paragraph at lines 3600--3609 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, Underfull \hbox (badness 10000) in paragraph at lines 3600--3609 @texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib/libR.dyl ib[]@textrm , [48] Chapter 8 [49] [50] [51] [52] [53] Underfull \hbox (badness 10000) in paragraph at lines 3965--3973 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa tchArgs = FALSE[] @textrm and [54] Chapter 9 [55] [56] Chapter 10 [57] Chapter 11 [58] Chapter 12 [59] [60] (Function and variable index) [61] (./R-ints.vrs [62]) (Concept index) [63] (./R-ints.cps) [64] ) (see the transcript file for additional information) Output written on R-ints.pdf (69 pages, 426194 bytes). Transcript written on R-ints.log. This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013/Debian) restricted \write18 enabled. entering extended mode (/build/buildd/r-base-3.0.2/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2013-02-01.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-ints.aux ) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-ints.toc [-1]) [-2] [-3] (./R-ints.toc) (./R-ints.toc) Chapter 1 [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] Chapter 2 [24] Overfull \hbox (26.43913pt too wide) in paragraph at lines 1960--1960 [] @texttt if (!is.character(x)) x <- structure(as.character(x), names = na mes(x))[] [25] [26] [27] [28] Chapter 3 [29] [30] Chapter 4 [31] [32] Chapter 5 [33] Chapter 6 [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] Chapter 7 [46] [47] Underfull \hbox (badness 10000) in paragraph at lines 3600--3609 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, Underfull \hbox (badness 10000) in paragraph at lines 3600--3609 @texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib/libR.dyl ib[]@textrm , [48] Chapter 8 [49] [50] [51] [52] [53] Underfull \hbox (badness 10000) in paragraph at lines 3965--3973 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa tchArgs = FALSE[] @textrm and [54] Chapter 9 [55] [56] Chapter 10 [57] Chapter 11 [58] Chapter 12 [59] [60] (Function and variable index) [61] (./R-ints.vrs [62]) (Concept index) [63] (./R-ints.cps) [64] ) (see the transcript file for additional information) Output written on R-ints.pdf (69 pages, 426198 bytes). Transcript written on R-ints.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-lang.texi This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013/Debian) restricted \write18 enabled. entering extended mode (/build/buildd/r-base-3.0.2/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2013-02-01.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Chapter 2 [1] [2] Cross reference values unknown; you must run TeX again. Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294 @textbf storage.mode| [3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] [28] Chapter 5 [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] Chapter 7 [43] [44] [45] Chapter 8 [46] [47] Chapter 9 [48] [49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58] (Function and Variable Index) [59] (Concept Index) [60] Appendix A [61] [62] ) (see the transcript file for additional information) Output written on R-lang.pdf (65 pages, 331319 bytes). Transcript written on R-lang.log. This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013/Debian) restricted \write18 enabled. entering extended mode (/build/buildd/r-base-3.0.2/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2013-02-01.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-lang.aux ) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-lang.toc [-1] [-2]) [-3] (./R-lang.toc) (./R-lang.toc) Chapter 1 Chapter 2 [1] [2] Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294 @textbf storage.mode| [3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] [28] Chapter 5 [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] Chapter 7 [43] [44] [45] Chapter 8 [46] [47] Chapter 9 [48] [49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58] (Function and Variable Index) [59] (./R-lang.vrs [60]) (Concept Index) [61] (./R-lang.cps) Appendix A [62] [63] ) (see the transcript file for additional information) Output written on R-lang.pdf (68 pages, 380408 bytes). Transcript written on R-lang.log. This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013/Debian) restricted \write18 enabled. entering extended mode (/build/buildd/r-base-3.0.2/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2013-02-01.11]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-lang.aux ) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-lang.toc [-1] [-2]) [-3] (./R-lang.toc) (./R-lang.toc) Chapter 1 Chapter 2 [1] [2] Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294 @textbf storage.mode| [3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] [28] Chapter 5 [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] Chapter 7 [43] [44] [45] Chapter 8 [46] [47] Chapter 9 [48] [49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58] (Function and Variable Index) [59] (./R-lang.vrs [60]) (Concept Index) [61] (./R-lang.cps) Appendix A [62] [63] ) (see the transcript file for additional information) Output written on R-lang.pdf (68 pages, 380412 bytes). Transcript written on R-lang.log. installing R manuals in PDF format ... make[2]: Leaving directory `/build/buildd/r-base-3.0.2/doc/manual' make[1]: Leaving directory `/build/buildd/r-base-3.0.2' make prefix=/build/buildd/r-base-3.0.2/debian/r-base-core/usr \ infodir=/build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/info install-info make[1]: Entering directory `/build/buildd/r-base-3.0.2' make[2]: Entering directory `/build/buildd/r-base-3.0.2/doc/manual' /usr/bin/makeinfo --enable-encoding -D UseExternalXrefs -I. R-FAQ.texi /usr/bin/makeinfo --enable-encoding -D UseExternalXrefs -I. R-admin.texi /usr/bin/makeinfo --enable-encoding -D UseExternalXrefs -I. R-data.texi /usr/bin/makeinfo --enable-encoding -D UseExternalXrefs -I. R-exts.texi R-exts.texi:1476: warning: @strong{Note...} produces a spurious cross-reference in Info; reword to avoid that /usr/bin/makeinfo --enable-encoding -D UseExternalXrefs -I. R-intro.texi /usr/bin/makeinfo --enable-encoding -D UseExternalXrefs -I. R-ints.texi /usr/bin/makeinfo --enable-encoding -D UseExternalXrefs -I. R-lang.texi mkdir -p -- /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/info /usr/bin/install -c -m 644 "./dir" "/build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/info" installing R info pages ... updating '/build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/info/dir' ... install-info: warning: don't call programs like install-info with an absolute path, install-info: warning: /usr/sbin/install-info provided by dpkg is deprecated and will go away soon; install-info: warning: its replacement lives in /usr/bin/. install-info: warning: nothing done since /usr/bin/install-info doesn't exist, install-info: warning: you might want to install an info-browser package. install-info: warning: don't call programs like install-info with an absolute path, install-info: warning: /usr/sbin/install-info provided by dpkg is deprecated and will go away soon; install-info: warning: its replacement lives in /usr/bin/. install-info: warning: nothing done since /usr/bin/install-info doesn't exist, install-info: warning: you might want to install an info-browser package. install-info: warning: don't call programs like install-info with an absolute path, install-info: warning: /usr/sbin/install-info provided by dpkg is deprecated and will go away soon; install-info: warning: its replacement lives in /usr/bin/. install-info: warning: nothing done since /usr/bin/install-info doesn't exist, install-info: warning: you might want to install an info-browser package. install-info: warning: don't call programs like install-info with an absolute path, install-info: warning: /usr/sbin/install-info provided by dpkg is deprecated and will go away soon; install-info: warning: its replacement lives in /usr/bin/. install-info: warning: nothing done since /usr/bin/install-info doesn't exist, install-info: warning: you might want to install an info-browser package. install-info: warning: don't call programs like install-info with an absolute path, install-info: warning: /usr/sbin/install-info provided by dpkg is deprecated and will go away soon; install-info: warning: its replacement lives in /usr/bin/. install-info: warning: nothing done since /usr/bin/install-info doesn't exist, install-info: warning: you might want to install an info-browser package. install-info: warning: don't call programs like install-info with an absolute path, install-info: warning: /usr/sbin/install-info provided by dpkg is deprecated and will go away soon; install-info: warning: its replacement lives in /usr/bin/. install-info: warning: nothing done since /usr/bin/install-info doesn't exist, install-info: warning: you might want to install an info-browser package. install-info: warning: don't call programs like install-info with an absolute path, install-info: warning: /usr/sbin/install-info provided by dpkg is deprecated and will go away soon; install-info: warning: its replacement lives in /usr/bin/. install-info: warning: nothing done since /usr/bin/install-info doesn't exist, install-info: warning: you might want to install an info-browser package. make[2]: Leaving directory `/build/buildd/r-base-3.0.2/doc/manual' make[1]: Leaving directory `/build/buildd/r-base-3.0.2' dh_movefiles --sourcedir=debian/r-base-core -pr-doc-pdf dh_movefiles --sourcedir=debian/r-base-core -pr-doc-html touch install-indep-stamp gunzip -9v /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/info/*.gz /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/info/R-FAQ.info.gz: 67.0% -- replaced with /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/info/R-FAQ.info /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/info/R-admin.info.gz: 68.3% -- replaced with /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/info/R-admin.info /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/info/R-data.info.gz: 70.6% -- replaced with /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/info/R-data.info /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/info/R-exts.info-1.gz: 66.9% -- replaced with /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/info/R-exts.info-1 /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/info/R-exts.info-2.gz: 71.8% -- replaced with /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/info/R-exts.info-2 /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/info/R-exts.info.gz: 65.9% -- replaced with /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/info/R-exts.info /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/info/R-intro.info.gz: 70.0% -- replaced with /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/info/R-intro.info /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/info/R-ints.info.gz: 67.7% -- replaced with /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/info/R-ints.info /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/info/R-lang.info.gz: 71.7% -- replaced with /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/info/R-lang.info dh_movefiles --sourcedir=debian/r-base-core -pr-doc-info rm -vf /build/buildd/r-base-3.0.2/debian/r-doc-info/usr/share/info/dir \ /build/buildd/r-base-3.0.2/debian/r-doc-info/usr/share/info/dir.old removed '/build/buildd/r-base-3.0.2/debian/r-doc-info/usr/share/info/dir' dh_installdirs -pr-mathlib usr/include usr/lib \ usr/share/lintian/overrides \ usr/lib/pkgconfig dh_movefiles --sourcedir=debian/r-base-core -pr-mathlib (cd /build/buildd/r-base-3.0.2/debian/r-mathlib/usr/lib; \ ls -l ; \ mv -v libRmath.so libRmath.so.1.0.0; \ ln -sv libRmath.so.1.0.0 libRmath.so.1; \ ln -sv libRmath.so.1 libRmath.so) total 2052 -rw-rw-r-- 1 root root 1360284 Oct 25 11:09 libRmath.a -rwxrwxr-x 1 root root 724775 Oct 25 11:09 libRmath.so drwxr-xr-x 2 root root 4096 Oct 25 11:14 pkgconfig 'libRmath.so' -> 'libRmath.so.1.0.0' 'libRmath.so.1' -> 'libRmath.so.1.0.0' 'libRmath.so' -> 'libRmath.so.1' install -m 0644 src/include/Rmath.h \ /build/buildd/r-base-3.0.2/debian/r-mathlib/usr/include install -m 0644 debian/Rprofile.site /build/buildd/r-base-3.0.2/debian/r-base-core/etc/R install -m 0644 debian/Renviron.site /build/buildd/r-base-3.0.2/debian/r-base-core/etc/R (cd /build/buildd/r-base-3.0.2/debian/r-base-core/usr/lib/R/etc; \ cat /build/buildd/r-base-3.0.2/debian/Renviron-R_LIBS.patch | patch --verbose; \ mv Makeconf repositories ldpaths ../../../../etc/R/; \ mv Renviron Renviron.ucf; \ ln -s /etc/R/Makeconf .; \ ln -s /etc/R/Renviron .; \ ln -s /etc/R/Renviron.site .; \ ln -s /etc/R/Rprofile.site .; \ ln -s /etc/R/ldpaths .; \ ln -s /etc/R/repositories . ) Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |--- Renviron.orig 2003-04-04 06:52:22.000000000 -0500 |+++ Renviron 2003-04-04 06:49:05.000000000 -0500 -------------------------- patching file Renviron Using Plan A... Hunk #1 succeeded at 43 with fuzz 2 (offset 10 lines). done install -m 0644 debian/R.bash_completion \ debian/r-base-core/etc/bash_completion.d/R (cd /build/buildd/r-base-3.0.2/debian/r-base-core/usr/lib/; \ ln -sv R/lib/libR.so . ) './libR.so' -> 'R/lib/libR.so' # edd 21 Jun 2012 add icon and desktop file from Philip Johnson's patch (cd debian/icon-class-patch && munpack rlogo_icon.png.mpack) rlogo_icon.png (application/octet-stream) install -m 0644 debian/icon-class-patch/rlogo_icon.png \ debian/r-base-core/usr/share/icons/hicolor/48x48/apps install -m 0644 debian/icon-class-patch/R.desktop \ debian/r-base-core/usr/share/applications rm debian/icon-class-patch/rlogo_icon.png touch install-arch-stamp *** binary-arch *** dh_testdir -a dh_testroot -a dh_installdocs -pr-base-core NEWS.* README \ debian/README.Atlas \ debian/README.mathlib dh_installdocs -pr-mathlib NEWS.* README \ debian/README.mathlib dh_installdocs -pr-base-core-dbg dh_installexamples -pr-mathlib src/nmath/standalone/test.c dh_installmenu -a # (cd /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../../lib/R/doc .) (cd /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../R/doc .) (cd /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../../lib/R/library .) install -p -m 0644 debian/r-base-core.lintian \ /build/buildd/r-base-3.0.2/debian/r-base-core/usr/share/lintian/overrides/r-base-core install -p -m 0644 debian/r-recommended.lintian \ /build/buildd/r-base-3.0.2/debian/r-recommended/usr/share/lintian/overrides/r-recommended install -p -m 0644 debian/r-mathlib.lintian \ /build/buildd/r-base-3.0.2/debian/r-mathlib/usr/share/lintian/overrides/r-mathlib dh_installchangelogs -a -k NEWS dh_strip --sourcedir=/build/buildd/r-base-3.0.2/debian/r-base-core --dbg-package=r-base-core-dbg dh_strip debug symbol extraction: all non-arch-all packages for this build platform powerpc: r-base-core r-mathlib r-base-core-dbg dh_strip debug symbol extraction: not adding gnu debuglinks since --dbg-package is given dh_strip debug symbol extraction: packages to act on: r-base-core r-mathlib r-base-core-dbg dh_strip debug symbol extraction: ignored packages: we have -dbg package(s), not installing anything into ddeb find: `/build/buildd/r-base-3.0.2/debian/r-base-core-dbgsym': No such file or directory dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-deb: warning: '/build/buildd/r-base-3.0.2/debian/r-base-core-dbgsym/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `r-base-core-dbgsym' in `../r-base-core-dbgsym_3.0.2-1ubuntu1_powerpc.ddeb'. we have -dbg package(s), not installing anything into ddeb find: `/build/buildd/r-base-3.0.2/debian/r-mathlib-dbgsym': No such file or directory dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-deb: warning: '/build/buildd/r-base-3.0.2/debian/r-mathlib-dbgsym/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `r-mathlib-dbgsym' in `../r-mathlib-dbgsym_3.0.2-1ubuntu1_powerpc.ddeb'. Unknown option: sourcedir dh_strip --sourcedir=/build/buildd/r-base-3.0.2/debian/r-mathlib dh_strip debug symbol extraction: all non-arch-all packages for this build platform powerpc: r-base-core r-mathlib r-base-core-dbg dh_strip debug symbol extraction: packages to act on: r-base-core r-mathlib r-base-core-dbg dh_strip debug symbol extraction: ignored packages: r-base-core is already stripped, ignoring find: `/build/buildd/r-base-3.0.2/debian/r-base-core-dbgsym': No such file or directory dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-deb: warning: '/build/buildd/r-base-3.0.2/debian/r-base-core-dbgsym/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `r-base-core-dbgsym' in `../r-base-core-dbgsym_3.0.2-1ubuntu1_powerpc.ddeb'. r-mathlib is already stripped, ignoring find: `/build/buildd/r-base-3.0.2/debian/r-mathlib-dbgsym': No such file or directory dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-deb: warning: '/build/buildd/r-base-3.0.2/debian/r-mathlib-dbgsym/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `r-mathlib-dbgsym' in `../r-mathlib-dbgsym_3.0.2-1ubuntu1_powerpc.ddeb'. Unknown option: sourcedir dh_compress -a dh_fixperms -a dh_link -a dh_makeshlibs -a dh_installdeb -a dh_perl -a dh_shlibdeps -a -l /build/buildd/r-base-3.0.2/debian/r-base-core/usr/lib/R/lib dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so' dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so' dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so' dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so' dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so' dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so' dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so' dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so' dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so' dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so' dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so' dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so' dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so' dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so' dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so' dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so' dpkg-shlibdeps: warning: Can't extract name and version from library name `libR.so' dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package r-base-core: unknown substitution variable ${perl:Depends} dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 118 pkgstriptranslations: processing r-base-core (in debian/r-base-core); do_strip: , oemstrip: debian/r-base-core/usr/share/applications/R.desktop: does not have gettext domain, not stripping pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/r-base-core/DEBIAN/control, package r-base-core, directory debian/r-base-core .. removing usr/share/doc/r-base-core/changelog.gz pkgstripfiles: Truncating usr/share/doc/r-base-core/changelog.Debian.gz to topmost ten records OptiPNG 0.6.4: Advanced PNG optimizer. Copyright (C) 2001-2010 Cosmin Truta. ** Processing: ./usr/lib/R/library/graphics/help/figures/mai.png Warning: Extraneous data found after IEND 600x600 pixels, 8 bits/pixel, grayscale Reducing image to 2 bits/pixel, 3 colors in palette Recoverable errors found in input. Rerun OptiPNG with -fix enabled. Error: Previous error(s) not fixed ** Status report 1 file(s) have been processed. 1 error(s) have been encountered. WARNING: optipng failed on ./usr/lib/R/library/graphics/help/figures/mai.png, ignoring 4667 4667 100% ./usr/lib/R/library/graphics/help/figures/mai.png (Unsupported bit depth/color type, 8/0) 4667 4667 100% OptiPNG 0.6.4: Advanced PNG optimizer. Copyright (C) 2001-2010 Cosmin Truta. ** Processing: ./usr/lib/R/library/graphics/help/figures/oma.png Warning: Extraneous data found after IEND 540x690 pixels, 8 bits/pixel, grayscale Reducing image to 2 bits/pixel, 3 colors in palette Recoverable errors found in input. Rerun OptiPNG with -fix enabled. Error: Previous error(s) not fixed ** Status report 1 file(s) have been processed. 1 error(s) have been encountered. WARNING: optipng failed on ./usr/lib/R/library/graphics/help/figures/oma.png, ignoring 5114 5114 100% ./usr/lib/R/library/graphics/help/figures/oma.png (Unsupported bit depth/color type, 8/0) 5114 5114 100% OptiPNG 0.6.4: Advanced PNG optimizer. Copyright (C) 2001-2010 Cosmin Truta. ** Processing: ./usr/lib/R/library/graphics/help/figures/pch.png Warning: Extraneous data found after IEND 700x70 pixels, 4x8 bits/pixel, RGB+alpha Reducing image to 8 bits/pixel, grayscale Recoverable errors found in input. Rerun OptiPNG with -fix enabled. Error: Previous error(s) not fixed ** Status report 1 file(s) have been processed. 1 error(s) have been encountered. WARNING: optipng failed on ./usr/lib/R/library/graphics/help/figures/pch.png, ignoring 9287 5520 59% ./usr/lib/R/library/graphics/help/figures/pch.png 9287 5520 59% OptiPNG 0.6.4: Advanced PNG optimizer. Copyright (C) 2001-2010 Cosmin Truta. ** Processing: ./usr/share/icons/hicolor/48x48/apps/rlogo_icon.png 48x48 pixels, 4x8 bits/pixel, RGB+alpha Input IDAT size = 4275 bytes Input file size = 4440 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4111 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 1 zc = 9 zm = 8 zs = 1 f = 1 zc = 1 zm = 8 zs = 2 f = 1 zc = 9 zm = 8 zs = 3 f = 1 zc = 9 zm = 8 zs = 0 f = 2 zc = 9 zm = 8 zs = 1 f = 2 zc = 1 zm = 8 zs = 2 f = 2 zc = 9 zm = 8 zs = 3 f = 2 zc = 9 zm = 8 zs = 0 f = 3 zc = 9 zm = 8 zs = 1 f = 3 zc = 1 zm = 8 zs = 2 f = 3 zc = 9 zm = 8 zs = 3 f = 3 zc = 9 zm = 8 zs = 0 f = 4 zc = 9 zm = 8 zs = 1 f = 4 zc = 1 zm = 8 zs = 2 f = 4 zc = 9 zm = 8 zs = 3 f = 4 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4111 Output IDAT size = 4111 bytes (164 bytes decrease) Output file size = 4276 bytes (164 bytes = 3.69% decrease) 4276 4136 96% ./usr/share/icons/hicolor/48x48/apps/rlogo_icon.png 4276 4136 96% pkgstripfiles: PNG optimization for package r-base-core took 5 s dpkg-deb: warning: 'debian/r-base-core/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `r-base-core' in `../r-base-core_3.0.2-1ubuntu1_powerpc.deb'. INFO: pkgstriptranslations version 118 pkgstriptranslations: processing r-mathlib (in debian/r-mathlib); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/r-mathlib/DEBIAN/control, package r-mathlib, directory debian/r-mathlib .. removing usr/share/doc/r-mathlib/changelog.gz pkgstripfiles: Truncating usr/share/doc/r-mathlib/changelog.Debian.gz to topmost ten records pkgstripfiles: PNG optimization for package r-mathlib took 0 s dpkg-deb: warning: 'debian/r-mathlib/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `r-mathlib' in `../r-mathlib_3.0.2-1ubuntu1_powerpc.deb'. INFO: pkgstriptranslations version 118 pkgstriptranslations: processing r-base-core-dbg (in debian/r-base-core-dbg); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/r-base-core-dbg/DEBIAN/control, package r-base-core-dbg, directory debian/r-base-core-dbg .. removing usr/share/doc/r-base-core-dbg/changelog.gz Searching for duplicated docs in dependency r-base-core... symlinking changelog.Debian.gz in r-base-core-dbg to file in r-base-core pkgstripfiles: PNG optimization for package r-base-core-dbg took 0 s dpkg-deb: warning: 'debian/r-base-core-dbg/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `r-base-core-dbg' in `../r-base-core-dbg_3.0.2-1ubuntu1_powerpc.deb'. dpkg-genchanges -B -mUbuntu/powerpc Build Daemon >../r-base_3.0.2-1ubuntu1_powerpc.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build r-base-3.0.2 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20131025-1115 Publishing debug debs. chroot-autobuild/build/buildd/r-base-core_3.0.2-1ubuntu1_powerpc.deb: new debian package, version 2.0. size 21319898 bytes: control archive= 26173 bytes. 118 bytes, 6 lines conffiles 2749 bytes, 45 lines control 67847 bytes, 858 lines md5sums 2396 bytes, 70 lines * postinst #!/bin/sh 160 bytes, 5 lines * postrm #!/bin/sh 667 bytes, 34 lines * preinst #!/bin/sh 689 bytes, 26 lines * prerm #!/bin/sh 30 bytes, 1 lines shlibs Package: r-base-core Source: r-base Version: 3.0.2-1ubuntu1 Architecture: powerpc Maintainer: Ubuntu Developers Installed-Size: 30982 Depends: zip, unzip, libpaper-utils, xdg-utils, libblas3 | libblas.so.3, libbz2-1.0, libc6 (>= 2.16), libcairo2 (>= 1.6.0), libgfortran3 (>= 4.3), libglib2.0-0 (>= 2.12.0), libgomp1 (>= 4.2.1), libjpeg8 (>= 8c), liblapack3 | liblapack.so.3, liblzma5 (>= 5.1.1alpha+20120614), libpango-1.0-0 (>= 1.14.0), libpangocairo-1.0-0 (>= 1.14.0), libpcre3 (>= 8.10), libpng12-0 (>= 1.2.13-4), libreadline6 (>= 6.0), libtiff5 (>> 4.0.0-1~), libx11-6, libxt6, tcl8.5 (>= 8.5.0), tk8.5 (>= 8.5.0), zlib1g (>= 1:1.1.4), ucf (>= 3.0) Recommends: r-recommended, r-base-dev, r-doc-html Suggests: ess, r-doc-info | r-doc-pdf, r-mathlib, r-base-html Conflicts: r-base-latex, r-cran-rcompgen, r-gnome Replaces: r-base (<= 1.4.1-1), r-base-latex (<= 2.9.2-4), r-cran-rcompgen (<= 0.1-17-1), r-gnome (<= 2.3.1), r-recommended (<< 1.9.0) Provides: r-base-latex, r-cran-rcompgen, r-gnome Section: gnu-r Priority: optional Homepage: http://www.r-project.org/ Description: GNU R core of statistical computation and graphics system R is a system for statistical computation and graphics. It consists of a language plus a run-time environment with graphics, a debugger, access to certain system functions, and the ability to run programs stored in script files. . The design of R has been heavily influenced by two existing languages: Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the resulting language is very similar in appearance to S, the underlying implementation and semantics are derived from Scheme. . The core of R is an interpreted computer language which allows branching and looping as well as modular programming using functions. Most of the user-visible functions in R are written in R. It is possible for the user to interface to procedures written in the C, C++, or FORTRAN languages for efficiency, and many of R's core functions do so. The R distribution contains functionality for a large number of statistical procedures and underlying applied math computations. There is also a large set of functions which provide a flexible graphical environment for creating various kinds of data presentations. . Additionally, several thousand extension "packages" are available from CRAN, the Comprehensive R Archive Network, many also as Debian packages, named 'r-cran-'. . This package provides the core GNU R system from which only the optional documentation packages r-base-html, r-doc-html, r-doc-pdf and r-doc-info have been split off to somewhat reduce the size of this package. Original-Maintainer: Dirk Eddelbuettel chroot-autobuild/build/buildd/r-mathlib_3.0.2-1ubuntu1_powerpc.deb: new debian package, version 2.0. size 861752 bytes: control archive= 1848 bytes. 1861 bytes, 40 lines control 938 bytes, 14 lines md5sums 135 bytes, 7 lines * postinst #!/bin/sh 132 bytes, 7 lines * postrm #!/bin/sh 30 bytes, 1 lines shlibs Package: r-mathlib Source: r-base Version: 3.0.2-1ubuntu1 Architecture: powerpc Maintainer: Ubuntu Developers Installed-Size: 1335 Depends: libc6 (>= 2.4) Recommends: r-base-core (= 3.0.2-1ubuntu1), r-base-dev (= 3.0.2-1ubuntu1) Section: gnu-r Priority: optional Homepage: http://www.r-project.org/ Description: GNU R standalone mathematics library R is a system for statistical computation and graphics. It consists of a language plus a run-time environment with graphics, a debugger, access to certain system functions, and the ability to run programs stored in script files. . The design of R has been heavily influenced by two existing languages: Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the resulting language is very similar in appearance to S, the underlying implementation and semantics are derived from Scheme. . The core of R is an interpreted computer language which allows branching and looping as well as modular programming using functions. Most of the user-visible functions in R are written in R. It is possible for the user to interface to procedures written in the C, C++, or FORTRAN languages for efficiency, and many of R's core functions do so. The R distribution contains functionality for a large number of statistical procedures and underlying applied math computations. There is also a large set of functions which provide a flexible graphical environment for creating various kinds of data presentations. . Additionally, several thousand extension "packages" are available from CRAN, the Comprehensive R Archive Network, many also as Debian packages, named 'r-cran-'. . This package provides the libRmath shared and static libraries which can be called from standalone C or C++ code. Original-Maintainer: Dirk Eddelbuettel chroot-autobuild/build/buildd/r-base-core-dbg_3.0.2-1ubuntu1_powerpc.deb: new debian package, version 2.0. size 4086890 bytes: control archive= 1874 bytes. 1867 bytes, 39 lines control 1776 bytes, 22 lines md5sums Package: r-base-core-dbg Source: r-base Version: 3.0.2-1ubuntu1 Architecture: powerpc Maintainer: Ubuntu Developers Installed-Size: 10342 Depends: r-base-core (= 3.0.2-1ubuntu1), r-base-dev (= 3.0.2-1ubuntu1) Section: debug Priority: extra Homepage: http://www.r-project.org/ Description: GNU R debug symbols for statistical comp. language and environment R is a system for statistical computation and graphics. It consists of a language plus a run-time environment with graphics, a debugger, access to certain system functions, and the ability to run programs stored in script files. . The design of R has been heavily influenced by two existing languages: Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the resulting language is very similar in appearance to S, the underlying implementation and semantics are derived from Scheme. . The core of R is an interpreted computer language which allows branching and looping as well as modular programming using functions. Most of the user-visible functions in R are written in R. It is possible for the user to interface to procedures written in the C, C++, or FORTRAN languages for efficiency, and many of R's core functions do so. The R distribution contains functionality for a large number of statistical procedures and underlying applied math computations. There is also a large set of functions which provide a flexible graphical environment for creating various kinds of data presentations. . Additionally, several thousand extension "packages" are available from CRAN, the Comprehensive R Archive Network, many also as Debian packages, named 'r-cran-'. . This package contains debugging symbol tables for the binaries and dynamic libraries in the r-base-core package. 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root/root 0 2013-10-25 11:15 ./usr/share/doc/r-base-core-dbg/changelog.Debian.gz -> ../r-base-core/changelog.Debian.gz r-base_3.0.2-1ubuntu1_powerpc.changes: Format: 1.8 Date: Fri, 25 Oct 2013 11:17:32 +0100 Source: r-base Binary: r-base r-base-core r-base-dev r-mathlib r-base-html r-doc-pdf r-doc-html r-doc-info r-recommended r-base-core-dbg Architecture: powerpc Version: 3.0.2-1ubuntu1 Distribution: trusty-proposed Urgency: low Maintainer: Ubuntu/powerpc Build Daemon Changed-By: Colin Watson Description: r-base - GNU R statistical computation and graphics system r-base-core - GNU R core of statistical computation and graphics system r-base-core-dbg - GNU R debug symbols for statistical comp. language and environmen r-base-dev - GNU R installation of auxiliary GNU R packages r-base-html - GNU R html docs for statistical computing system functions r-doc-html - GNU R html manuals for statistical computing system r-doc-info - GNU R info manuals statistical computing system r-doc-pdf - GNU R pdf manuals for statistical computing system r-mathlib - GNU R standalone mathematics library r-recommended - GNU R collection of recommended packages [metapackage] Changes: r-base (3.0.2-1ubuntu1) trusty; urgency=low . * Resynchronise with Debian. Remaining changes: - Extend SHLIB_* definition hack in install.R to cover aarch64 as well. Checksums-Sha1: 3b49c6be782c03433f0d5013f1a46301b087e96d 21319898 r-base-core_3.0.2-1ubuntu1_powerpc.deb 3a801a53030864509ba2ced8df5a1596998d7d0e 861752 r-mathlib_3.0.2-1ubuntu1_powerpc.deb 15c090c6ade4777ae79a1ddffaab9d98cfe792a3 4086890 r-base-core-dbg_3.0.2-1ubuntu1_powerpc.deb Checksums-Sha256: e530391c2dd728b581306f934562ea6852e1622a2e6901c2948e089a871b60c2 21319898 r-base-core_3.0.2-1ubuntu1_powerpc.deb 33c292d481be1f8ca1bfb1eb45a0fcb7d2fcf6f7729b781c5b3094f14fda9508 861752 r-mathlib_3.0.2-1ubuntu1_powerpc.deb 906086c090700654bec76d58065acbb1577a67c9cfdd0b17db2f60cbca60c519 4086890 r-base-core-dbg_3.0.2-1ubuntu1_powerpc.deb Files: 46bdecb9ffda80afa89426bd6b4fa104 21319898 gnu-r optional r-base-core_3.0.2-1ubuntu1_powerpc.deb e2eca86123e2f0fcc2f29a0b5d04295c 861752 gnu-r optional r-mathlib_3.0.2-1ubuntu1_powerpc.deb 359d50892bf4314d9e6c17acaac00b6e 4086890 debug extra r-base-core-dbg_3.0.2-1ubuntu1_powerpc.deb Original-Maintainer: Dirk Eddelbuettel ****************************************************************************** Built successfully ****************************************************************************** Finished at 20131025-1115 Build needed 00:33:48, 303656k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-5160535'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-5160535/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-5160535'] Unmounting chroot for build PACKAGEBUILD-5160535... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-5160535'] Removing build PACKAGEBUILD-5160535