RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep']
Forking launchpad-buildd slave process...
Kernel version: Linux auburn 3.13.0-61-generic #100-Ubuntu SMP Wed Jul 29 11:25:05 UTC 2015 aarch64
Buildd toolchain package versions: launchpad-buildd_133 python-lpbuildd_133 sbuild_0.65.2-1ubuntu2~ubuntu14.04.1~ppa6 dpkg-dev_1.17.5ubuntu5.4 python-debian_0.1.27ubuntu1~ubuntu14.04.1~ppa1.
Syncing the system clock with the buildd NTP service...
14 Aug 13:31:02 ntpdate[1615]: adjust time server 10.211.37.1 offset -0.231086 sec
RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-7800431', '/home/buildd/filecache-default/af35fe67c6f4a11de2f2377c4d16a0c257c76bfa']
Unpacking chroot for build PACKAGEBUILD-7800431
RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-7800431']
Mounting chroot for build PACKAGEBUILD-7800431
RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-7800431', 'deb http://ftpmaster.internal/ubuntu wily main universe', 'deb http://ftpmaster.internal/ubuntu wily-security main universe', 'deb http://ftpmaster.internal/ubuntu wily-updates main universe', 'deb http://ftpmaster.internal/ubuntu wily-proposed main universe']
Overriding sources.list in build-PACKAGEBUILD-7800431
RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-7800431', 'arm64']
Updating debian chroot for build PACKAGEBUILD-7800431
Ign http://ftpmaster.internal wily InRelease
Ign http://archive-team.internal wily InRelease
Ign http://ftpmaster.internal wily-security InRelease
Ign http://archive-team.internal wily Release.gpg
Ign http://ftpmaster.internal wily-updates InRelease
Hit http://archive-team.internal wily Release
Ign http://ftpmaster.internal wily-proposed InRelease
Ign http://archive-team.internal wily/main arm64 Packages/DiffIndex
Get:1 http://ftpmaster.internal wily Release.gpg [933 B]
Get:2 http://ftpmaster.internal wily-security Release.gpg [933 B]
Get:3 http://ftpmaster.internal wily-updates Release.gpg [933 B]
Get:4 http://ftpmaster.internal wily-proposed Release.gpg [933 B]
Get:5 http://ftpmaster.internal wily Release [217 kB]
Ign http://archive-team.internal wily/main Translation-en
Hit http://archive-team.internal wily/main arm64 Packages
Get:6 http://ftpmaster.internal wily-security Release [63.5 kB]
Get:7 http://ftpmaster.internal wily-updates Release [63.5 kB]
Get:8 http://ftpmaster.internal wily-proposed Release [217 kB]
Get:9 http://ftpmaster.internal wily/main arm64 Packages [1388 kB]
Get:10 http://ftpmaster.internal wily/universe arm64 Packages [6433 kB]
Get:11 http://ftpmaster.internal wily/main Translation-en [840 kB]
Get:12 http://ftpmaster.internal wily/universe Translation-en [4569 kB]
Get:13 http://ftpmaster.internal wily-security/main arm64 Packages [28 B]
Get:14 http://ftpmaster.internal wily-security/universe arm64 Packages [28 B]
Get:15 http://ftpmaster.internal wily-security/main Translation-en [28 B]
Get:16 http://ftpmaster.internal wily-security/universe Translation-en [28 B]
Get:17 http://ftpmaster.internal wily-updates/main arm64 Packages [28 B]
Get:18 http://ftpmaster.internal wily-updates/universe arm64 Packages [28 B]
Get:19 http://ftpmaster.internal wily-updates/main Translation-en [28 B]
Get:20 http://ftpmaster.internal wily-updates/universe Translation-en [28 B]
Get:21 http://ftpmaster.internal wily-proposed/main arm64 Packages [110 kB]
Get:22 http://ftpmaster.internal wily-proposed/universe arm64 Packages [618 kB]
Get:23 http://ftpmaster.internal wily-proposed/main Translation-en [65.5 kB]
Get:24 http://ftpmaster.internal wily-proposed/universe Translation-en [396 kB]
Fetched 15.0 MB in 12s (1236 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
  libapt-pkg4.16
The following packages will be upgraded:
  apt apt-transport-https build-essential debconf dpkg dpkg-dev libapparmor1
  libaudit-common libaudit1 libcurl3-gnutls libdpkg-perl libpcre3 libsystemd0
  libudev1 systemd systemd-sysv udev
17 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 9048 kB of archives.
After this operation, 1633 kB of additional disk space will be used.
Get:1 http://ftpmaster.internal/ubuntu/ wily/main dpkg arm64 1.18.2ubuntu1 [2043 kB]
Get:2 http://ftpmaster.internal/ubuntu/ wily-proposed/main libapt-pkg4.16 arm64 1.0.9.10ubuntu6 [587 kB]
Get:3 http://ftpmaster.internal/ubuntu/ wily-proposed/main apt arm64 1.0.9.10ubuntu6 [955 kB]
Get:4 http://ftpmaster.internal/ubuntu/ wily/main debconf all 1.5.57ubuntu1 [136 kB]
Get:5 http://ftpmaster.internal/ubuntu/ wily-proposed/main libpcre3 arm64 2:8.35-7ubuntu5 [192 kB]
Get:6 http://ftpmaster.internal/ubuntu/ wily/main libudev1 arm64 224-1ubuntu3 [47.1 kB]
Get:7 http://ftpmaster.internal/ubuntu/ wily/main udev arm64 224-1ubuntu3 [921 kB]
Get:8 http://ftpmaster.internal/ubuntu/ wily-proposed/main libapparmor1 arm64 2.10-0ubuntu3 [26.8 kB]
Get:9 http://ftpmaster.internal/ubuntu/ wily/main libaudit-common all 1:2.4.2-1ubuntu1 [4080 B]
Get:10 http://ftpmaster.internal/ubuntu/ wily/main libaudit1 arm64 1:2.4.2-1ubuntu1 [33.7 kB]
Get:11 http://ftpmaster.internal/ubuntu/ wily/main libsystemd0 arm64 224-1ubuntu3 [161 kB]
Get:12 http://ftpmaster.internal/ubuntu/ wily/main systemd arm64 224-1ubuntu3 [2971 kB]
Get:13 http://ftpmaster.internal/ubuntu/ wily/main systemd-sysv arm64 224-1ubuntu3 [15.1 kB]
Get:14 http://ftpmaster.internal/ubuntu/ wily-proposed/main libcurl3-gnutls arm64 7.43.0-1ubuntu2 [150 kB]
Get:15 http://ftpmaster.internal/ubuntu/ wily-proposed/main apt-transport-https arm64 1.0.9.10ubuntu6 [22.9 kB]
Get:16 http://ftpmaster.internal/ubuntu/ wily/main dpkg-dev all 1.18.2ubuntu1 [583 kB]
Get:17 http://ftpmaster.internal/ubuntu/ wily/main libdpkg-perl all 1.18.2ubuntu1 [194 kB]
Get:18 http://ftpmaster.internal/ubuntu/ wily-proposed/main build-essential arm64 12.1ubuntu1 [4754 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 9048 kB in 5s (1750 kB/s)
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Preparing to unpack .../dpkg_1.18.2ubuntu1_arm64.deb ...
Unpacking dpkg (1.18.2ubuntu1) over (1.18.1ubuntu1) ...
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Selecting previously unselected package libapt-pkg4.16:arm64.
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Preparing to unpack .../libpcre3_2%3a8.35-7ubuntu5_arm64.deb ...
Unpacking libpcre3:arm64 (2:8.35-7ubuntu5) over (2:8.35-7ubuntu2) ...
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Unpacking libudev1:arm64 (224-1ubuntu3) over (224-1ubuntu2) ...
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Preparing to unpack .../udev_224-1ubuntu3_arm64.deb ...
Unpacking udev (224-1ubuntu3) over (224-1ubuntu2) ...
Setting up udev (224-1ubuntu3) ...
addgroup: The group `input' already exists as a system group. Exiting.
A chroot environment has been detected, udev not started.
Processing triggers for systemd (224-1ubuntu2) ...
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Preparing to unpack .../libapparmor1_2.10-0ubuntu3_arm64.deb ...
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Setting up libaudit-common (1:2.4.2-1ubuntu1) ...
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Setting up libaudit1:arm64 (1:2.4.2-1ubuntu1) ...
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Preparing to unpack .../systemd_224-1ubuntu3_arm64.deb ...
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Setting up systemd (224-1ubuntu3) ...
addgroup: The group `systemd-journal' already exists as a system group. Exiting.
addgroup: The group `systemd-journal-remote' already exists as a system group. Exiting.
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Preparing to unpack .../apt-transport-https_1.0.9.10ubuntu6_arm64.deb ...
Unpacking apt-transport-https (1.0.9.10ubuntu6) over (1.0.9.10ubuntu1) ...
Preparing to unpack .../dpkg-dev_1.18.2ubuntu1_all.deb ...
Unpacking dpkg-dev (1.18.2ubuntu1) over (1.18.1ubuntu1) ...
Preparing to unpack .../libdpkg-perl_1.18.2ubuntu1_all.deb ...
Unpacking libdpkg-perl (1.18.2ubuntu1) over (1.18.1ubuntu1) ...
Preparing to unpack .../build-essential_12.1ubuntu1_arm64.deb ...
Unpacking build-essential (12.1ubuntu1) over (11.6ubuntu6) ...
Setting up libcurl3-gnutls:arm64 (7.43.0-1ubuntu2) ...
Setting up apt-transport-https (1.0.9.10ubuntu6) ...
Setting up libdpkg-perl (1.18.2ubuntu1) ...
Setting up dpkg-dev (1.18.2ubuntu1) ...
Setting up build-essential (12.1ubuntu1) ...
Processing triggers for libc-bin (2.21-0ubuntu4) ...
RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-7800431', 'arm64', 'wily-proposed', '-c', 'chroot:autobuild', '--arch=arm64', '--dist=wily-proposed', '--purge=never', '--nolog', 'r-base_3.2.2-1.dsc']
Initiating build PACKAGEBUILD-7800431 with 8 jobs across 8 processor cores.
Kernel reported to sbuild: 3.13.0-61-generic #100-Ubuntu SMP Wed Jul 29 11:25:05 UTC 2015 aarch64
sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on auburn.buildd

╔══════════════════════════════════════════════════════════════════════════════╗
║ r-base 3.2.2-1 (arm64)                                     14 Aug 2015 13:32 ║
╚══════════════════════════════════════════════════════════════════════════════╝

Package: r-base
Version: 3.2.2-1
Source Version: 3.2.2-1
Distribution: wily-proposed
Machine Architecture: arm64
Host Architecture: arm64
Build Architecture: arm64

I: NOTICE: Log filtering will replace 'build/r-base-8bDvUK/r-base-3.2.2' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/r-base-8bDvUK' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-7800431/chroot-autobuild' with '«CHROOT»'

┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files                                                           │
└──────────────────────────────────────────────────────────────────────────────┘


Local sources
─────────────

r-base_3.2.2-1.dsc exists in .; copying to chroot

Check architectures
───────────────────


Check dependencies
──────────────────

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-yAO2nH/apt_archive/sbuild-build-depends-core-dummy.deb'.
Ign file: ./ InRelease
Ign file: ./ Release.gpg
Get:1 file: ./ Release [2119 B]
Ign file: ./ Translation-en
Reading package lists...
Reading package lists...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver)                         │
└──────────────────────────────────────────────────────────────────────────────┘

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 0 B/770 B of archives.
After this operation, 0 B of additional disk space will be used.
WARNING: The following packages cannot be authenticated!
  sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
Authentication warning overridden.
Selecting previously unselected package sbuild-build-depends-core-dummy.
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Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), gcc (>= 4:4.1.0), g++ (>= 4:4.1.0), gfortran (>= 4:4.1.0), libblas-dev, liblapack-dev (>= 3.1.1), tcl8.6-dev, tk8.6-dev, bison, groff-base, libncurses5-dev, libreadline-dev, debhelper (>= 7.2.3), texinfo (>= 4.1-2), libbz2-dev, liblzma-dev, libpcre3-dev, libcurl4-openssl-dev | libcurl4-dev, xdg-utils, zlib1g-dev, libpng-dev, libjpeg-dev, libx11-dev, libxt-dev, x11proto-core-dev, libpango1.0-dev, libcairo2-dev, libtiff5-dev, xvfb, xauth, xfonts-base, texlive-base, texlive-latex-base, texlive-generic-recommended, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, default-jdk, mpack, bash-completion
Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), gcc (>= 4:4.1.0), g++ (>= 4:4.1.0), gfortran (>= 4:4.1.0), libblas-dev, liblapack-dev (>= 3.1.1), tcl8.6-dev, tk8.6-dev, bison, groff-base, libncurses5-dev, libreadline-dev, debhelper (>= 7.2.3), texinfo (>= 4.1-2), libbz2-dev, liblzma-dev, libpcre3-dev, libcurl4-openssl-dev | libcurl4-dev, xdg-utils, zlib1g-dev, libpng-dev, libjpeg-dev, libx11-dev, libxt-dev, x11proto-core-dev, libpango1.0-dev, libcairo2-dev, libtiff5-dev, xvfb, xauth, xfonts-base, texlive-base, texlive-latex-base, texlive-generic-recommended, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, default-jdk, mpack, bash-completion
dpkg-deb: building package 'sbuild-build-depends-r-base-dummy' in '/«BUILDDIR»/resolver-2BSf_m/apt_archive/sbuild-build-depends-r-base-dummy.deb'.
Ign file: ./ InRelease
Ign file: ./ Release.gpg
Get:1 file: ./ Release [2119 B]
Ign file: ./ Translation-en
Reading package lists...
Reading package lists...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-base build dependencies (apt-based resolver)                       │
└──────────────────────────────────────────────────────────────────────────────┘

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
  bash-completion bison bsdmainutils ca-certificates-java debhelper
  default-jdk default-jre default-jre-headless file fontconfig
  fontconfig-config fonts-cabin fonts-comfortaa fonts-crosextra-caladea
  fonts-crosextra-carlito fonts-dejavu-core fonts-dejavu-extra fonts-droid
  fonts-ebgaramond fonts-ebgaramond-extra fonts-font-awesome
  fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia
  fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga
  fonts-gfs-solomos fonts-inconsolata fonts-junicode fonts-lato
  fonts-linuxlibertine fonts-lobster fonts-lobstertwo fonts-oflb-asana-math
  fonts-roboto fonts-sil-gentium fonts-sil-gentium-basic fonts-sil-gentiumplus
  fonts-stix gettext gettext-base gfortran gfortran-5 gir1.2-freedesktop
  gir1.2-glib-2.0 gir1.2-pango-1.0 groff-base intltool-debian java-common
  libasound2 libasound2-data libasprintf0v5 libasyncns0 libatk-bridge2.0-0
  libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data
  libatspi2.0-0 libavahi-client3 libavahi-common-data libavahi-common3
  libbison-dev libblas-common libblas-dev libblas3 libbz2-dev
  libcairo-gobject2 libcairo-script-interpreter2 libcairo2 libcairo2-dev
  libcroco3 libcups2 libcupsfilters1 libcupsimage2 libcurl3
  libcurl4-openssl-dev libdatrie1 libdrm-nouveau2 libdrm-radeon1 libdrm2
  libelf1 libexpat1 libexpat1-dev libflac8 libfontconfig1 libfontconfig1-dev
  libfontenc1 libfreetype6 libfreetype6-dev libgdk-pixbuf2.0-0
  libgdk-pixbuf2.0-common libgfortran-5-dev libgfortran3 libgif4
  libgirepository-1.0-1 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa
  libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libgraphite2-3
  libgs9 libgs9-common libgtk2.0-0 libgtk2.0-common libharfbuzz-dev
  libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libice-dev libice6
  libicu55 libijs-0.35 libintl-perl libjasper1 libjbig-dev libjbig0
  libjbig2dec0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8
  libjpeg8-dev libjson-c2 libkpathsea6 liblapack-dev liblapack3 liblcms2-2
  liblzma-dev liblzo2-2 libmagic1 libncurses5-dev libnspr4 libnss3
  libnss3-nssdb libogg0 libpango-1.0-0 libpango1.0-dev libpangocairo-1.0-0
  libpangoft2-1.0-0 libpangoxft-1.0-0 libpaper-utils libpaper1 libpcre16-3
  libpcre3-dev libpcre32-3 libpcrecpp0v5 libpcsclite1 libpipeline1
  libpixman-1-0 libpixman-1-dev libpng12-dev libpoppler52 libpotrace0
  libptexenc1 libpthread-stubs0-dev libpulse0 libpython-stdlib
  libpython2.7-minimal libpython2.7-stdlib libreadline-dev libreadline6-dev
  libsigsegv2 libsm-dev libsm6 libsndfile1 libsynctex1 libtcl8.6 libtexlua52
  libtext-unidecode-perl libthai-data libthai0 libtiff5 libtiff5-dev
  libtiffxx5 libtinfo-dev libtk8.6 libunistring0 libvorbis0a libvorbisenc2
  libwrap0 libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6
  libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0
  libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shm0 libxcb-shm0-dev
  libxcb-sync1 libxcb1 libxcb1-dev libxcomposite1 libxcursor1 libxdamage1
  libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxfont1 libxft-dev
  libxft2 libxi6 libxinerama1 libxkbfile1 libxml-libxml-perl
  libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml2
  libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender-dev libxrender1 libxshmfence1
  libxss-dev libxss1 libxt-dev libxt6 libxtst6 libxv1 libxxf86dga1 libxxf86vm1
  libzzip-0-13 m4 man-db mime-support mpack openjdk-7-jdk openjdk-7-jre
  openjdk-7-jre-headless pkg-config po-debconf poppler-data
  preview-latex-style python python-minimal python2.7 python2.7-minimal
  shared-mime-info tcl8.6 tcl8.6-dev tex-common texinfo texlive-base
  texlive-binaries texlive-extra-utils texlive-fonts-extra
  texlive-fonts-recommended texlive-generic-recommended texlive-latex-base
  texlive-latex-extra texlive-latex-recommended texlive-pictures tk8.6
  tk8.6-dev ttf-adf-accanthis ttf-adf-gillius ttf-adf-universalis tzdata-java
  ucf x11-common x11-utils x11-xkb-utils x11proto-core-dev x11proto-input-dev
  x11proto-kb-dev x11proto-render-dev x11proto-scrnsaver-dev x11proto-xext-dev
  xauth xdg-utils xfonts-base xfonts-encodings xfonts-utils xkb-data
  xorg-sgml-doctools xserver-common xtrans-dev xvfb zlib1g-dev
Suggested packages:
  bison-doc wamerican wordlist whois vacation dh-make fontforge gettext-doc
  gfortran-doc gfortran-5-doc libgfortran3-dbg groff equivs libasound2-plugins
  alsa-utils libcairo2-doc cups-common libcurl4-doc libcurl3-dbg libidn11-dev
  libkrb5-dev libldap2-dev librtmp-dev libssl-dev libglib2.0-doc
  librsvg2-common gvfs libice-doc libintl-xs-perl libjasper-runtime
  liblcms2-utils liblzma-doc ncurses-doc imagemagick libpango1.0-doc pcscd
  pulseaudio readline-doc libsm-doc libxcb-doc libxext-doc libxt-doc less
  www-browser mail-transport-agent inews openjdk-7-demo openjdk-7-source
  visualvm icedtea-7-plugin libnss-mdns sun-java6-fonts fonts-ipafont-gothic
  fonts-ipafont-mincho ttf-wqy-microhei ttf-wqy-zenhei fonts-indic
  libmail-box-perl poppler-utils ghostscript fonts-arphic-ukai
  fonts-arphic-uming fonts-nanum python-doc python-tk python2.7-doc
  binfmt-support tcl-tclreadline tcl8.6-doc texinfo-doc-nonfree gv
  postscript-viewer xpdf-reader pdf-viewer perl-tk latexmk chktex lacheck
  latexdiff xindy purifyeps fragmaster dvidvi dvipng cm-super
  libfile-which-perl libspreadsheet-parseexcel-perl python-pygments
  texlive-pstricks dot2tex libtcltk-ruby prerex tk8.6-doc mesa-utils gvfs-bin
  xfs xserver
Recommended packages:
  curl wget lynx-cur libasprintf-dev libgettextpo-dev at-spi2-core bzip2-doc
  libtxc-dxtn-s2tc0 libtxc-dxtn0 xdg-user-dirs hicolor-icon-theme
  libgtk2.0-bin tcpd libx11-doc libxml-sax-expat-perl xml-core libgnome-2-0
  libgnomevfs2-0 libgconf-2-4 libmail-sendmail-perl lmodern ruby wish
  libyaml-tiny-perl libfile-homedir-perl texlive-fonts-extra-doc tex-gyre
  texlive-fonts-recommended-doc tipa texlive-latex-base-doc
  texlive-latex-extra-doc prosper texlive-latex-recommended-doc
  texlive-pictures-doc xterm x-terminal-emulator libfile-mimeinfo-perl
  x11-xserver-utils
The following NEW packages will be installed:
  bash-completion bison bsdmainutils ca-certificates-java debhelper
  default-jdk default-jre default-jre-headless file fontconfig
  fontconfig-config fonts-cabin fonts-comfortaa fonts-crosextra-caladea
  fonts-crosextra-carlito fonts-dejavu-core fonts-dejavu-extra fonts-droid
  fonts-ebgaramond fonts-ebgaramond-extra fonts-font-awesome
  fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia
  fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga
  fonts-gfs-solomos fonts-inconsolata fonts-junicode fonts-lato
  fonts-linuxlibertine fonts-lobster fonts-lobstertwo fonts-oflb-asana-math
  fonts-roboto fonts-sil-gentium fonts-sil-gentium-basic fonts-sil-gentiumplus
  fonts-stix gettext gettext-base gfortran gfortran-5 gir1.2-freedesktop
  gir1.2-glib-2.0 gir1.2-pango-1.0 groff-base intltool-debian java-common
  libasound2 libasound2-data libasprintf0v5 libasyncns0 libatk-bridge2.0-0
  libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data
  libatspi2.0-0 libavahi-client3 libavahi-common-data libavahi-common3
  libbison-dev libblas-common libblas-dev libblas3 libbz2-dev
  libcairo-gobject2 libcairo-script-interpreter2 libcairo2 libcairo2-dev
  libcroco3 libcups2 libcupsfilters1 libcupsimage2 libcurl3
  libcurl4-openssl-dev libdatrie1 libdrm-nouveau2 libdrm-radeon1 libdrm2
  libelf1 libexpat1 libexpat1-dev libflac8 libfontconfig1 libfontconfig1-dev
  libfontenc1 libfreetype6 libfreetype6-dev libgdk-pixbuf2.0-0
  libgdk-pixbuf2.0-common libgfortran-5-dev libgfortran3 libgif4
  libgirepository-1.0-1 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa
  libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libgraphite2-3
  libgs9 libgs9-common libgtk2.0-0 libgtk2.0-common libharfbuzz-dev
  libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libice-dev libice6
  libicu55 libijs-0.35 libintl-perl libjasper1 libjbig-dev libjbig0
  libjbig2dec0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8
  libjpeg8-dev libjson-c2 libkpathsea6 liblapack-dev liblapack3 liblcms2-2
  liblzma-dev liblzo2-2 libmagic1 libncurses5-dev libnspr4 libnss3
  libnss3-nssdb libogg0 libpango-1.0-0 libpango1.0-dev libpangocairo-1.0-0
  libpangoft2-1.0-0 libpangoxft-1.0-0 libpaper-utils libpaper1 libpcre16-3
  libpcre3-dev libpcre32-3 libpcrecpp0v5 libpcsclite1 libpipeline1
  libpixman-1-0 libpixman-1-dev libpng12-dev libpoppler52 libpotrace0
  libptexenc1 libpthread-stubs0-dev libpulse0 libpython-stdlib
  libpython2.7-minimal libpython2.7-stdlib libreadline-dev libreadline6-dev
  libsigsegv2 libsm-dev libsm6 libsndfile1 libsynctex1 libtcl8.6 libtexlua52
  libtext-unidecode-perl libthai-data libthai0 libtiff5 libtiff5-dev
  libtiffxx5 libtinfo-dev libtk8.6 libunistring0 libvorbis0a libvorbisenc2
  libwrap0 libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6
  libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0
  libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shm0 libxcb-shm0-dev
  libxcb-sync1 libxcb1 libxcb1-dev libxcomposite1 libxcursor1 libxdamage1
  libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxfont1 libxft-dev
  libxft2 libxi6 libxinerama1 libxkbfile1 libxml-libxml-perl
  libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml2
  libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender-dev libxrender1 libxshmfence1
  libxss-dev libxss1 libxt-dev libxt6 libxtst6 libxv1 libxxf86dga1 libxxf86vm1
  libzzip-0-13 m4 man-db mime-support mpack openjdk-7-jdk openjdk-7-jre
  openjdk-7-jre-headless pkg-config po-debconf poppler-data
  preview-latex-style python python-minimal python2.7 python2.7-minimal
  sbuild-build-depends-r-base-dummy shared-mime-info tcl8.6 tcl8.6-dev
  tex-common texinfo texlive-base texlive-binaries texlive-extra-utils
  texlive-fonts-extra texlive-fonts-recommended texlive-generic-recommended
  texlive-latex-base texlive-latex-extra texlive-latex-recommended
  texlive-pictures tk8.6 tk8.6-dev ttf-adf-accanthis ttf-adf-gillius
  ttf-adf-universalis tzdata-java ucf x11-common x11-utils x11-xkb-utils
  x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-render-dev
  x11proto-scrnsaver-dev x11proto-xext-dev xauth xdg-utils xfonts-base
  xfonts-encodings xfonts-utils xkb-data xorg-sgml-doctools xserver-common
  xtrans-dev xvfb zlib1g-dev
0 upgraded, 298 newly installed, 0 to remove and 0 not upgraded.
Need to get 455 MB/455 MB of archives.
After this operation, 1439 MB of additional disk space will be used.
WARNING: The following packages cannot be authenticated!
  sbuild-build-depends-r-base-dummy
Authentication warning overridden.
Get:1 http://ftpmaster.internal/ubuntu/ wily/main libjson-c2 arm64 0.11-4ubuntu2 [20.3 kB]
Get:2 http://ftpmaster.internal/ubuntu/ wily/main bash-completion all 1:2.1-4.1ubuntu2 [153 kB]
Get:3 http://ftpmaster.internal/ubuntu/ wily/main libasprintf0v5 arm64 0.19.4-1ubuntu3 [6680 B]
Get:4 http://ftpmaster.internal/ubuntu/ wily/main libpipeline1 arm64 1.4.0-1 [22.3 kB]
Get:5 http://ftpmaster.internal/ubuntu/ wily/main libxau6 arm64 1:1.0.8-1 [7590 B]
Get:6 http://ftpmaster.internal/ubuntu/ wily/main libxdmcp6 arm64 1:1.1.2-1 [10.2 kB]
Get:7 http://ftpmaster.internal/ubuntu/ wily/main libxcb1 arm64 1.11-0ubuntu1 [33.4 kB]
Get:8 http://ftpmaster.internal/ubuntu/ wily/main libx11-data all 2:1.6.3-1ubuntu1 [113 kB]
Get:9 http://ftpmaster.internal/ubuntu/ wily/main libx11-6 arm64 2:1.6.3-1ubuntu1 [512 kB]
Get:10 http://ftpmaster.internal/ubuntu/ wily/main libxext6 arm64 2:1.3.3-1 [25.4 kB]
Get:11 http://ftpmaster.internal/ubuntu/ wily/main libxmuu1 arm64 2:1.1.2-1 [9510 B]
Get:12 http://ftpmaster.internal/ubuntu/ wily/main groff-base arm64 1.22.3-1 [1145 kB]
Get:13 http://ftpmaster.internal/ubuntu/ wily/main bsdmainutils arm64 9.0.6ubuntu1 [171 kB]
Get:14 http://ftpmaster.internal/ubuntu/ wily/main man-db arm64 2.7.0.2-5 [835 kB]
Get:15 http://ftpmaster.internal/ubuntu/ wily/main fonts-dejavu-core all 2.35-1 [1039 kB]
Get:16 http://ftpmaster.internal/ubuntu/ wily/main fonts-freefont-ttf all 20120503-4 [4140 kB]
Get:17 http://ftpmaster.internal/ubuntu/ wily/main ucf all 3.0030 [55.5 kB]
Get:18 http://ftpmaster.internal/ubuntu/ wily/main fontconfig-config all 2.11.1-0ubuntu6 [48.7 kB]
Get:19 http://ftpmaster.internal/ubuntu/ wily/main libexpat1 arm64 2.1.0-7 [58.8 kB]
Get:20 http://ftpmaster.internal/ubuntu/ wily/main libfreetype6 arm64 2.5.2-4ubuntu1 [266 kB]
Get:21 http://ftpmaster.internal/ubuntu/ wily/main libfontconfig1 arm64 2.11.1-0ubuntu6 [111 kB]
Get:22 http://ftpmaster.internal/ubuntu/ wily/main fontconfig arm64 2.11.1-0ubuntu6 [176 kB]
Get:23 http://ftpmaster.internal/ubuntu/ wily/main fonts-droid all 1:4.4.4r2-6ubuntu1 [4109 kB]
Get:24 http://ftpmaster.internal/ubuntu/ wily/main fonts-lato all 2.0-1 [2693 kB]
Get:25 http://ftpmaster.internal/ubuntu/ wily/universe fonts-roboto all 1:4.4.4r2-6ubuntu1 [368 kB]
Get:26 http://ftpmaster.internal/ubuntu/ wily/main libasyncns0 arm64 0.8-5build1 [11.1 kB]
Get:27 http://ftpmaster.internal/ubuntu/ wily/main libglib2.0-0 arm64 2.45.4-2 [908 kB]
Get:28 http://ftpmaster.internal/ubuntu/ wily/main libatk1.0-data all 2.16.0-2 [16.9 kB]
Get:29 http://ftpmaster.internal/ubuntu/ wily/main libatk1.0-0 arm64 2.16.0-2 [49.7 kB]
Get:30 http://ftpmaster.internal/ubuntu/ wily/main libavahi-common-data arm64 0.6.31-4ubuntu4 [21.1 kB]
Get:31 http://ftpmaster.internal/ubuntu/ wily/main libavahi-common3 arm64 0.6.31-4ubuntu4 [18.6 kB]
Get:32 http://ftpmaster.internal/ubuntu/ wily/main libavahi-client3 arm64 0.6.31-4ubuntu4 [21.4 kB]
Get:33 http://ftpmaster.internal/ubuntu/ wily/main libpixman-1-0 arm64 0.32.6-3 [123 kB]
Get:34 http://ftpmaster.internal/ubuntu/ wily/main libxcb-render0 arm64 1.11-0ubuntu1 [10.2 kB]
Get:35 http://ftpmaster.internal/ubuntu/ wily/main libxcb-shm0 arm64 1.11-0ubuntu1 [5432 B]
Get:36 http://ftpmaster.internal/ubuntu/ wily/main libxrender1 arm64 1:0.9.9-0ubuntu1 [16.0 kB]
Get:37 http://ftpmaster.internal/ubuntu/ wily/main libcairo2 arm64 1.14.2-2ubuntu1 [464 kB]
Get:38 http://ftpmaster.internal/ubuntu/ wily/main libcairo-gobject2 arm64 1.14.2-2ubuntu1 [16.1 kB]
Get:39 http://ftpmaster.internal/ubuntu/ wily/main liblzo2-2 arm64 2.08-1.2 [42.2 kB]
Get:40 http://ftpmaster.internal/ubuntu/ wily/main libcairo-script-interpreter2 arm64 1.14.2-2ubuntu1 [44.7 kB]
Get:41 http://ftpmaster.internal/ubuntu/ wily/main libicu55 arm64 55.1-4 [7489 kB]
Get:42 http://ftpmaster.internal/ubuntu/ wily/main libxml2 arm64 2.9.2+dfsg1-3ubuntu1 [560 kB]
Get:43 http://ftpmaster.internal/ubuntu/ wily/main libcroco3 arm64 0.6.8-3 [67.5 kB]
Get:44 http://ftpmaster.internal/ubuntu/ wily/main libgfortran3 arm64 5.2.1-15ubuntu1 [189 kB]
Get:45 http://ftpmaster.internal/ubuntu/ wily/main libgif4 arm64 4.1.6-11 [25.8 kB]
Get:46 http://ftpmaster.internal/ubuntu/ wily/main libgraphite2-3 arm64 1.2.4-3ubuntu1 [45.6 kB]
Get:47 http://ftpmaster.internal/ubuntu/ wily/main libgtk2.0-common all 2.24.28-0ubuntu1 [121 kB]
Get:48 http://ftpmaster.internal/ubuntu/ wily/main libcups2 arm64 2.0.3-10 [160 kB]
Get:49 http://ftpmaster.internal/ubuntu/ wily/main libjpeg-turbo8 arm64 1.3.0-0ubuntu2 [80.2 kB]
Get:50 http://ftpmaster.internal/ubuntu/ wily/main libjpeg8 arm64 8c-2ubuntu8 [2198 B]
Get:51 http://ftpmaster.internal/ubuntu/ wily/main libjasper1 arm64 1.900.1-debian1-2.4 [111 kB]
Get:52 http://ftpmaster.internal/ubuntu/ wily/main libjbig0 arm64 2.1-3.1 [23.8 kB]
Get:53 http://ftpmaster.internal/ubuntu/ wily/main libtiff5 arm64 4.0.3-12.3ubuntu2 [122 kB]
Get:54 http://ftpmaster.internal/ubuntu/ wily/main libgdk-pixbuf2.0-common all 2.31.5-1 [10.2 kB]
Get:55 http://ftpmaster.internal/ubuntu/ wily/main libgdk-pixbuf2.0-0 arm64 2.31.5-1 [143 kB]
Get:56 http://ftpmaster.internal/ubuntu/ wily/main libthai-data all 0.1.22-2 [131 kB]
Get:57 http://ftpmaster.internal/ubuntu/ wily/main libdatrie1 arm64 0.2.9-2 [14.5 kB]
Get:58 http://ftpmaster.internal/ubuntu/ wily/main libthai0 arm64 0.1.22-2 [14.6 kB]
Get:59 http://ftpmaster.internal/ubuntu/ wily/main libpango-1.0-0 arm64 1.36.8-3 [134 kB]
Get:60 http://ftpmaster.internal/ubuntu/ wily/main libharfbuzz0b arm64 1.0.1-1build1 [119 kB]
Get:61 http://ftpmaster.internal/ubuntu/ wily/main libpangoft2-1.0-0 arm64 1.36.8-3 [27.7 kB]
Get:62 http://ftpmaster.internal/ubuntu/ wily/main libpangocairo-1.0-0 arm64 1.36.8-3 [17.3 kB]
Get:63 http://ftpmaster.internal/ubuntu/ wily/main libxcomposite1 arm64 1:0.4.4-1 [7306 B]
Get:64 http://ftpmaster.internal/ubuntu/ wily/main libxfixes3 arm64 1:5.0.1-2 [10.2 kB]
Get:65 http://ftpmaster.internal/ubuntu/ wily/main libxcursor1 arm64 1:1.1.14-1 [19.9 kB]
Get:66 http://ftpmaster.internal/ubuntu/ wily/main libxdamage1 arm64 1:1.1.4-2 [6590 B]
Get:67 http://ftpmaster.internal/ubuntu/ wily/main libxi6 arm64 2:1.7.4-1 [24.9 kB]
Get:68 http://ftpmaster.internal/ubuntu/ wily/main libxinerama1 arm64 2:1.1.3-1 [7438 B]
Get:69 http://ftpmaster.internal/ubuntu/ wily/main libxrandr2 arm64 2:1.5.0-1 [15.4 kB]
Get:70 http://ftpmaster.internal/ubuntu/ wily/main shared-mime-info arm64 1.3-1 [387 kB]
Get:71 http://ftpmaster.internal/ubuntu/ wily/main libgtk2.0-0 arm64 2.24.28-0ubuntu1 [1434 kB]
Get:72 http://ftpmaster.internal/ubuntu/ wily/main x11-common all 1:7.7+7ubuntu4 [58.6 kB]
Get:73 http://ftpmaster.internal/ubuntu/ wily/main libice6 arm64 2:1.0.9-1 [32.8 kB]
Get:74 http://ftpmaster.internal/ubuntu/ wily/main liblcms2-2 arm64 2.6-3ubuntu2 [113 kB]
Get:75 http://ftpmaster.internal/ubuntu/ wily/main libogg0 arm64 1.3.2-1 [14.9 kB]
Get:76 http://ftpmaster.internal/ubuntu/ wily/main libxft2 arm64 2.3.2-1 [29.9 kB]
Get:77 http://ftpmaster.internal/ubuntu/ wily/main libpangoxft-1.0-0 arm64 1.36.8-3 [13.1 kB]
Get:78 http://ftpmaster.internal/ubuntu/ wily/main libpaper1 arm64 1.1.24+nmu2ubuntu3 [12.8 kB]
Get:79 http://ftpmaster.internal/ubuntu/ wily-proposed/main libpcrecpp0v5 arm64 2:8.35-7ubuntu5 [14.7 kB]
Get:80 http://ftpmaster.internal/ubuntu/ wily/main libsigsegv2 arm64 2.10-4 [13.3 kB]
Get:81 http://ftpmaster.internal/ubuntu/ wily/main libsm6 arm64 2:1.2.2-1 [13.7 kB]
Get:82 http://ftpmaster.internal/ubuntu/ wily-proposed/main libflac8 arm64 1.3.1-4 [156 kB]
Get:83 http://ftpmaster.internal/ubuntu/ wily/main libvorbis0a arm64 1.3.4-2 [75.9 kB]
Get:84 http://ftpmaster.internal/ubuntu/ wily/main libvorbisenc2 arm64 1.3.4-2 [64.1 kB]
Get:85 http://ftpmaster.internal/ubuntu/ wily/main libsndfile1 arm64 1.0.25-9.1 [117 kB]
Get:86 http://ftpmaster.internal/ubuntu/ wily/main libtcl8.6 arm64 8.6.4+dfsg-2ubuntu1 [753 kB]
Get:87 http://ftpmaster.internal/ubuntu/ wily/main libtiffxx5 arm64 4.0.3-12.3ubuntu2 [5888 B]
Get:88 http://ftpmaster.internal/ubuntu/ wily/main libxss1 arm64 1:1.2.2-1 [7968 B]
Get:89 http://ftpmaster.internal/ubuntu/ wily/main libtk8.6 arm64 8.6.4+dfsg-2ubuntu1 [598 kB]
Get:90 http://ftpmaster.internal/ubuntu/ wily/main libunistring0 arm64 0.9.3-5.2ubuntu1 [251 kB]
Get:91 http://ftpmaster.internal/ubuntu/ wily/main libwrap0 arm64 7.6.q-25 [43.5 kB]
Get:92 http://ftpmaster.internal/ubuntu/ wily/main libfontenc1 arm64 1:1.1.3-1 [12.1 kB]
Get:93 http://ftpmaster.internal/ubuntu/ wily/main libxfont1 arm64 1:1.5.1-1 [79.2 kB]
Get:94 http://ftpmaster.internal/ubuntu/ wily/main libxt6 arm64 1:1.1.5-0ubuntu1 [128 kB]
Get:95 http://ftpmaster.internal/ubuntu/ wily/main libxmu6 arm64 2:1.1.2-1 [38.4 kB]
Get:96 http://ftpmaster.internal/ubuntu/ wily/main libxpm4 arm64 1:3.5.11-1 [28.2 kB]
Get:97 http://ftpmaster.internal/ubuntu/ wily/main libxshmfence1 arm64 1.2-1 [4868 B]
Get:98 http://ftpmaster.internal/ubuntu/ wily/main libxtst6 arm64 2:1.2.2-1 [12.7 kB]
Get:99 http://ftpmaster.internal/ubuntu/ wily/main libxv1 arm64 2:1.0.10-1 [9302 B]
Get:100 http://ftpmaster.internal/ubuntu/ wily/main libxxf86dga1 arm64 2:1.1.4-1 [12.4 kB]
Get:101 http://ftpmaster.internal/ubuntu/ wily/main libxxf86vm1 arm64 1:1.1.4-1 [9492 B]
Get:102 http://ftpmaster.internal/ubuntu/ wily/main libzzip-0-13 arm64 0.13.62-3 [22.5 kB]
Get:103 http://ftpmaster.internal/ubuntu/ wily/main java-common all 0.52 [131 kB]
Get:104 http://ftpmaster.internal/ubuntu/ wily/main default-jre-headless arm64 2:1.7-52 [4080 B]
Get:105 http://ftpmaster.internal/ubuntu/ wily/main libnspr4 arm64 2:4.10.8-2ubuntu1 [91.5 kB]
Get:106 http://ftpmaster.internal/ubuntu/ wily/main libnss3-nssdb all 2:3.19.2-1ubuntu1 [10.6 kB]
Get:107 http://ftpmaster.internal/ubuntu/ wily/main libnss3 arm64 2:3.19.2-1ubuntu1 [933 kB]
Get:108 http://ftpmaster.internal/ubuntu/ wily/main ca-certificates-java all 20140324 [12.3 kB]
Get:109 http://ftpmaster.internal/ubuntu/ wily/main tzdata-java all 2015f-1 [69.2 kB]
Get:110 http://ftpmaster.internal/ubuntu/ wily/main libpcsclite1 arm64 1.8.14-1ubuntu1 [18.4 kB]
Get:111 http://ftpmaster.internal/ubuntu/ wily/main libpulse0 arm64 1:6.0-0ubuntu10~gcc5.3 [182 kB]
Get:112 http://ftpmaster.internal/ubuntu/ wily/main openjdk-7-jre-headless arm64 7u79-2.5.6-1 [38.7 MB]
Get:113 http://ftpmaster.internal/ubuntu/ wily/main poppler-data all 0.4.7-3 [1473 kB]
Get:114 http://ftpmaster.internal/ubuntu/ wily/main libpython2.7-minimal arm64 2.7.10-3 [337 kB]
Get:115 http://ftpmaster.internal/ubuntu/ wily/main python2.7-minimal arm64 2.7.10-3 [922 kB]
Get:116 http://ftpmaster.internal/ubuntu/ wily/main python-minimal arm64 2.7.9-1 [28.3 kB]
Get:117 http://ftpmaster.internal/ubuntu/ wily/main mime-support all 3.58ubuntu1 [31.6 kB]
Get:118 http://ftpmaster.internal/ubuntu/ wily/main libpython2.7-stdlib arm64 2.7.10-3 [1729 kB]
Get:119 http://ftpmaster.internal/ubuntu/ wily/main python2.7 arm64 2.7.10-3 [210 kB]
Get:120 http://ftpmaster.internal/ubuntu/ wily/main libpython-stdlib arm64 2.7.9-1 [7760 B]
Get:121 http://ftpmaster.internal/ubuntu/ wily/main python arm64 2.7.9-1 [137 kB]
Get:122 http://ftpmaster.internal/ubuntu/ wily/main libmagic1 arm64 1:5.22+15-2ubuntu1 [203 kB]
Get:123 http://ftpmaster.internal/ubuntu/ wily/main file arm64 1:5.22+15-2ubuntu1 [20.8 kB]
Get:124 http://ftpmaster.internal/ubuntu/ wily/main xkb-data all 2.12-1ubuntu1 [297 kB]
Get:125 http://ftpmaster.internal/ubuntu/ wily/main gettext-base arm64 0.19.4-1ubuntu3 [45.8 kB]
Get:126 http://ftpmaster.internal/ubuntu/ wily/main libgirepository-1.0-1 arm64 1.44.0-1 [73.4 kB]
Get:127 http://ftpmaster.internal/ubuntu/ wily/main gir1.2-glib-2.0 arm64 1.44.0-1 [126 kB]
Get:128 http://ftpmaster.internal/ubuntu/ wily/main libdrm2 arm64 2.4.62-1 [22.8 kB]
Get:129 http://ftpmaster.internal/ubuntu/ wily/main libelf1 arm64 0.163-4ubuntu1 [33.9 kB]
Get:130 http://ftpmaster.internal/ubuntu/ wily/main libglib2.0-data all 2.45.4-2 [127 kB]
Get:131 http://ftpmaster.internal/ubuntu/ wily/main xauth arm64 1:1.0.9-1ubuntu2 [20.7 kB]
Get:132 http://ftpmaster.internal/ubuntu/ wily/main m4 arm64 1.4.17-4 [182 kB]
Get:133 http://ftpmaster.internal/ubuntu/ wily/main libbison-dev arm64 2:3.0.2.dfsg-2 [337 kB]
Get:134 http://ftpmaster.internal/ubuntu/ wily/main bison arm64 2:3.0.2.dfsg-2 [229 kB]
Get:135 http://ftpmaster.internal/ubuntu/ wily/main gettext arm64 0.19.4-1ubuntu3 [794 kB]
Get:136 http://ftpmaster.internal/ubuntu/ wily/main intltool-debian all 0.35.0+20060710.2 [24.5 kB]
Get:137 http://ftpmaster.internal/ubuntu/ wily/main po-debconf all 1.0.18 [234 kB]
Get:138 http://ftpmaster.internal/ubuntu/ wily/main debhelper all 9.20150811ubuntu1 [731 kB]
Get:139 http://ftpmaster.internal/ubuntu/ wily/main libasound2-data all 1.0.29-0ubuntu1 [28.4 kB]
Get:140 http://ftpmaster.internal/ubuntu/ wily/main libasound2 arm64 1.0.29-0ubuntu1 [265 kB]
Get:141 http://ftpmaster.internal/ubuntu/ wily/main libglapi-mesa arm64 10.6.3-1ubuntu1 [32.5 kB]
Get:142 http://ftpmaster.internal/ubuntu/ wily/main libx11-xcb1 arm64 2:1.6.3-1ubuntu1 [8864 B]
Get:143 http://ftpmaster.internal/ubuntu/ wily/main libxcb-dri2-0 arm64 1.11-0ubuntu1 [6552 B]
Get:144 http://ftpmaster.internal/ubuntu/ wily/main libxcb-dri3-0 arm64 1.11-0ubuntu1 [5118 B]
Get:145 http://ftpmaster.internal/ubuntu/ wily/main libxcb-glx0 arm64 1.11-0ubuntu1 [18.2 kB]
Get:146 http://ftpmaster.internal/ubuntu/ wily/main libxcb-present0 arm64 1.11-0ubuntu1 [5142 B]
Get:147 http://ftpmaster.internal/ubuntu/ wily/main libxcb-sync1 arm64 1.11-0ubuntu1 [7764 B]
Get:148 http://ftpmaster.internal/ubuntu/ wily/main libdrm-nouveau2 arm64 2.4.62-1 [12.8 kB]
Get:149 http://ftpmaster.internal/ubuntu/ wily/main libdrm-radeon1 arm64 2.4.62-1 [19.1 kB]
Get:150 http://ftpmaster.internal/ubuntu/ wily/main libgl1-mesa-dri arm64 10.6.3-1ubuntu1 [2274 kB]
Get:151 http://ftpmaster.internal/ubuntu/ wily/main libgl1-mesa-glx arm64 10.6.3-1ubuntu1 [122 kB]
Get:152 http://ftpmaster.internal/ubuntu/ wily/main libatspi2.0-0 arm64 2.16.0-1ubuntu1 [47.1 kB]
Get:153 http://ftpmaster.internal/ubuntu/ wily/main libatk-bridge2.0-0 arm64 2.16.0-1ubuntu1 [42.4 kB]
Get:154 http://ftpmaster.internal/ubuntu/ wily/main libxaw7 arm64 2:1.0.13-1 [137 kB]
Get:155 http://ftpmaster.internal/ubuntu/ wily/main libxcb-shape0 arm64 1.11-0ubuntu1 [5602 B]
Get:156 http://ftpmaster.internal/ubuntu/ wily/main x11-utils arm64 7.7+3 [178 kB]
Get:157 http://ftpmaster.internal/ubuntu/ wily/main libatk-wrapper-java all 0.33.0-2 [32.2 kB]
Get:158 http://ftpmaster.internal/ubuntu/ wily/main libatk-wrapper-java-jni arm64 0.33.0-2 [21.8 kB]
Get:159 http://ftpmaster.internal/ubuntu/ wily/main openjdk-7-jre arm64 7u79-2.5.6-1 [145 kB]
Get:160 http://ftpmaster.internal/ubuntu/ wily/main default-jre arm64 2:1.7-52 [1012 B]
Get:161 http://ftpmaster.internal/ubuntu/ wily/main openjdk-7-jdk arm64 7u79-2.5.6-1 [13.8 MB]
Get:162 http://ftpmaster.internal/ubuntu/ wily/main default-jdk arm64 2:1.7-52 [1008 B]
Get:163 http://ftpmaster.internal/ubuntu/ wily/main fonts-cabin all 1.5-2 [140 kB]
Get:164 http://ftpmaster.internal/ubuntu/ wily/main fonts-comfortaa all 2.003-1 [131 kB]
Get:165 http://ftpmaster.internal/ubuntu/ wily/main fonts-crosextra-caladea all 20130214-1 [82.3 kB]
Get:166 http://ftpmaster.internal/ubuntu/ wily/main fonts-crosextra-carlito all 20130920-1 [742 kB]
Get:167 http://ftpmaster.internal/ubuntu/ wily/main fonts-dejavu-extra all 2.35-1 [1749 kB]
Get:168 http://ftpmaster.internal/ubuntu/ wily/main fonts-ebgaramond all 0.015+git20130628-3 [651 kB]
Get:169 http://ftpmaster.internal/ubuntu/ wily/main fonts-ebgaramond-extra all 0.015+git20130628-3 [933 kB]
Get:170 http://ftpmaster.internal/ubuntu/ wily/main fonts-font-awesome all 4.3.0~dfsg-2 [435 kB]
Get:171 http://ftpmaster.internal/ubuntu/ wily/main fonts-freefont-otf all 20120503-4 [3068 kB]
Get:172 http://ftpmaster.internal/ubuntu/ wily/main fonts-gfs-artemisia all 1.1-5 [260 kB]
Get:173 http://ftpmaster.internal/ubuntu/ wily/main fonts-gfs-complutum all 1.1-6 [41.6 kB]
Get:174 http://ftpmaster.internal/ubuntu/ wily/main fonts-gfs-didot all 1.1-6 [278 kB]
Get:175 http://ftpmaster.internal/ubuntu/ wily/main fonts-gfs-neohellenic all 1.1-6 [215 kB]
Get:176 http://ftpmaster.internal/ubuntu/ wily/main fonts-gfs-olga all 1.1-5 [33.4 kB]
Get:177 http://ftpmaster.internal/ubuntu/ wily/main fonts-gfs-solomos all 1.1-5 [40.7 kB]
Get:178 http://ftpmaster.internal/ubuntu/ wily/main fonts-inconsolata all 001.010-5 [61.8 kB]
Get:179 http://ftpmaster.internal/ubuntu/ wily/main fonts-junicode all 0.7.8-2 [642 kB]
Get:180 http://ftpmaster.internal/ubuntu/ wily/main fonts-linuxlibertine all 5.3.0-2 [1688 kB]
Get:181 http://ftpmaster.internal/ubuntu/ wily/main fonts-lobster all 2.0-2 [38.7 kB]
Get:182 http://ftpmaster.internal/ubuntu/ wily/main fonts-lobstertwo all 2.0-2 [92.7 kB]
Get:183 http://ftpmaster.internal/ubuntu/ wily/main fonts-oflb-asana-math all 000.907-6 [246 kB]
Get:184 http://ftpmaster.internal/ubuntu/ wily/main fonts-sil-gentium all 20081126:1.02-13 [238 kB]
Get:185 http://ftpmaster.internal/ubuntu/ wily/main fonts-sil-gentium-basic all 1.1-7 [379 kB]
Get:186 http://ftpmaster.internal/ubuntu/ wily/universe fonts-sil-gentiumplus all 1.510-web-2 [753 kB]
Get:187 http://ftpmaster.internal/ubuntu/ wily/main libgfortran-5-dev arm64 5.2.1-15ubuntu1 [226 kB]
Get:188 http://ftpmaster.internal/ubuntu/ wily/main gfortran-5 arm64 5.2.1-15ubuntu1 [24.0 MB]
Get:189 http://ftpmaster.internal/ubuntu/ wily/main gfortran arm64 4:5.2.1-3ubuntu1 [1268 B]
Get:190 http://ftpmaster.internal/ubuntu/ wily/main gir1.2-freedesktop arm64 1.44.0-1 [5790 B]
Get:191 http://ftpmaster.internal/ubuntu/ wily/main gir1.2-pango-1.0 arm64 1.36.8-3 [20.9 kB]
Get:192 http://ftpmaster.internal/ubuntu/ wily/main libblas-common arm64 1.2.20110419-10 [3066 B]
Get:193 http://ftpmaster.internal/ubuntu/ wily/main libblas3 arm64 1.2.20110419-10 [104 kB]
Get:194 http://ftpmaster.internal/ubuntu/ wily/main libblas-dev arm64 1.2.20110419-10 [103 kB]
Get:195 http://ftpmaster.internal/ubuntu/ wily/main libbz2-dev arm64 1.0.6-8 [28.0 kB]
Get:196 http://ftpmaster.internal/ubuntu/ wily/main libexpat1-dev arm64 2.1.0-7 [105 kB]
Get:197 http://ftpmaster.internal/ubuntu/ wily/main zlib1g-dev arm64 1:1.2.8.dfsg-2ubuntu1 [163 kB]
Get:198 http://ftpmaster.internal/ubuntu/ wily/main libpng12-dev arm64 1.2.51-0ubuntu3 [204 kB]
Get:199 http://ftpmaster.internal/ubuntu/ wily/main libfreetype6-dev arm64 2.5.2-4ubuntu1 [595 kB]
Get:200 http://ftpmaster.internal/ubuntu/ wily/main pkg-config arm64 0.28-1ubuntu1 [38.4 kB]
Get:201 http://ftpmaster.internal/ubuntu/ wily/main libfontconfig1-dev arm64 2.11.1-0ubuntu6 [630 kB]
Get:202 http://ftpmaster.internal/ubuntu/ wily/main xorg-sgml-doctools all 1:1.11-1 [12.9 kB]
Get:203 http://ftpmaster.internal/ubuntu/ wily/main x11proto-core-dev all 7.0.28-0ubuntu1 [699 kB]
Get:204 http://ftpmaster.internal/ubuntu/ wily/main libxau-dev arm64 1:1.0.8-1 [9768 B]
Get:205 http://ftpmaster.internal/ubuntu/ wily/main libxdmcp-dev arm64 1:1.1.2-1 [23.9 kB]
Get:206 http://ftpmaster.internal/ubuntu/ wily/main x11proto-input-dev all 2.3.1-1 [118 kB]
Get:207 http://ftpmaster.internal/ubuntu/ wily/main x11proto-kb-dev all 1.0.7-0ubuntu1 [224 kB]
Get:208 http://ftpmaster.internal/ubuntu/ wily/main xtrans-dev all 1.3.5-1 [70.5 kB]
Get:209 http://ftpmaster.internal/ubuntu/ wily/main libpthread-stubs0-dev arm64 0.3-4 [4078 B]
Get:210 http://ftpmaster.internal/ubuntu/ wily/main libxcb1-dev arm64 1.11-0ubuntu1 [69.8 kB]
Get:211 http://ftpmaster.internal/ubuntu/ wily/main libx11-dev arm64 2:1.6.3-1ubuntu1 [592 kB]
Get:212 http://ftpmaster.internal/ubuntu/ wily/main x11proto-render-dev all 2:0.11.1-2 [20.1 kB]
Get:213 http://ftpmaster.internal/ubuntu/ wily/main libxrender-dev arm64 1:0.9.9-0ubuntu1 [22.7 kB]
Get:214 http://ftpmaster.internal/ubuntu/ wily/main x11proto-xext-dev all 7.3.0-1 [212 kB]
Get:215 http://ftpmaster.internal/ubuntu/ wily/main libxext-dev arm64 2:1.3.3-1 [79.7 kB]
Get:216 http://ftpmaster.internal/ubuntu/ wily/main libice-dev arm64 2:1.0.9-1 [40.6 kB]
Get:217 http://ftpmaster.internal/ubuntu/ wily/main libsm-dev arm64 2:1.2.2-1 [14.9 kB]
Get:218 http://ftpmaster.internal/ubuntu/ wily/main libpixman-1-dev arm64 0.32.6-3 [142 kB]
Get:219 http://ftpmaster.internal/ubuntu/ wily/main libxcb-render0-dev arm64 1.11-0ubuntu1 [14.8 kB]
Get:220 http://ftpmaster.internal/ubuntu/ wily/main libxcb-shm0-dev arm64 1.11-0ubuntu1 [6652 B]
Get:221 http://ftpmaster.internal/ubuntu/ wily/main libglib2.0-bin arm64 2.45.4-2 [38.0 kB]
Get:222 http://ftpmaster.internal/ubuntu/ wily-proposed/main libpcre16-3 arm64 2:8.35-7ubuntu5 [114 kB]
Get:223 http://ftpmaster.internal/ubuntu/ wily-proposed/main libpcre32-3 arm64 2:8.35-7ubuntu5 [108 kB]
Get:224 http://ftpmaster.internal/ubuntu/ wily-proposed/main libpcre3-dev arm64 2:8.35-7ubuntu5 [441 kB]
Get:225 http://ftpmaster.internal/ubuntu/ wily/main libglib2.0-dev arm64 2.45.4-2 [1285 kB]
Get:226 http://ftpmaster.internal/ubuntu/ wily/main libcairo2-dev arm64 1.14.2-2ubuntu1 [515 kB]
Get:227 http://ftpmaster.internal/ubuntu/ wily/main libcupsfilters1 arm64 1.0.71-1ubuntu5 [67.3 kB]
Get:228 http://ftpmaster.internal/ubuntu/ wily/main libcupsimage2 arm64 2.0.3-10 [14.5 kB]
Get:229 http://ftpmaster.internal/ubuntu/ wily-proposed/main libcurl3 arm64 7.43.0-1ubuntu2 [154 kB]
Get:230 http://ftpmaster.internal/ubuntu/ wily-proposed/main libcurl4-openssl-dev arm64 7.43.0-1ubuntu2 [235 kB]
Get:231 http://ftpmaster.internal/ubuntu/ wily/main libijs-0.35 arm64 0.35-11 [14.2 kB]
Get:232 http://ftpmaster.internal/ubuntu/ wily/main libjbig2dec0 arm64 0.12-2 [48.7 kB]
Get:233 http://ftpmaster.internal/ubuntu/ wily/main libgs9-common all 9.15+dfsg-0ubuntu4 [2098 kB]
Get:234 http://ftpmaster.internal/ubuntu/ wily/main libgs9 arm64 9.15+dfsg-0ubuntu4 [1722 kB]
Get:235 http://ftpmaster.internal/ubuntu/ wily/main libharfbuzz-icu0 arm64 1.0.1-1build1 [5010 B]
Get:236 http://ftpmaster.internal/ubuntu/ wily/main libharfbuzz-gobject0 arm64 1.0.1-1build1 [9840 B]
Get:237 http://ftpmaster.internal/ubuntu/ wily/main libharfbuzz-dev arm64 1.0.1-1build1 [173 kB]
Get:238 http://ftpmaster.internal/ubuntu/ wily/main libintl-perl all 1.24-1 [805 kB]
Get:239 http://ftpmaster.internal/ubuntu/ wily/main libjpeg-turbo8-dev arm64 1.3.0-0ubuntu2 [213 kB]
Get:240 http://ftpmaster.internal/ubuntu/ wily/main libjpeg8-dev arm64 8c-2ubuntu8 [1550 B]
Get:241 http://ftpmaster.internal/ubuntu/ wily/main libjpeg-dev arm64 8c-2ubuntu8 [1546 B]
Get:242 http://ftpmaster.internal/ubuntu/ wily/main libkpathsea6 arm64 2015.20150524.37493-5build1 [48.5 kB]
Get:243 http://ftpmaster.internal/ubuntu/ wily/main liblapack3 arm64 3.5.0-4 [1255 kB]
Get:244 http://ftpmaster.internal/ubuntu/ wily/main liblapack-dev arm64 3.5.0-4 [1260 kB]
Get:245 http://ftpmaster.internal/ubuntu/ wily/main libtinfo-dev arm64 5.9+20150516-2ubuntu1 [71.9 kB]
Get:246 http://ftpmaster.internal/ubuntu/ wily/main libncurses5-dev arm64 5.9+20150516-2ubuntu1 [162 kB]
Get:247 http://ftpmaster.internal/ubuntu/ wily/main libxft-dev arm64 2.3.2-1 [40.6 kB]
Get:248 http://ftpmaster.internal/ubuntu/ wily/main libpango1.0-dev arm64 1.36.8-3 [272 kB]
Get:249 http://ftpmaster.internal/ubuntu/ wily/main libpaper-utils arm64 1.1.24+nmu2ubuntu3 [8044 B]
Get:250 http://ftpmaster.internal/ubuntu/ wily/main libpoppler52 arm64 0.33.0-0ubuntu3 [623 kB]
Get:251 http://ftpmaster.internal/ubuntu/ wily/main libpotrace0 arm64 1.12-1 [15.4 kB]
Get:252 http://ftpmaster.internal/ubuntu/ wily/main libptexenc1 arm64 2015.20150524.37493-5build1 [33.1 kB]
Get:253 http://ftpmaster.internal/ubuntu/ wily/main libreadline6-dev arm64 6.3-8ubuntu1 [115 kB]
Get:254 http://ftpmaster.internal/ubuntu/ wily/main libreadline-dev arm64 6.3-8ubuntu1 [1042 B]
Get:255 http://ftpmaster.internal/ubuntu/ wily/main libsynctex1 arm64 2015.20150524.37493-5build1 [37.3 kB]
Get:256 http://ftpmaster.internal/ubuntu/ wily/main libtexlua52 arm64 2015.20150524.37493-5build1 [75.0 kB]
Get:257 http://ftpmaster.internal/ubuntu/ wily/main libtext-unidecode-perl all 1.22-1 [100 kB]
Get:258 http://ftpmaster.internal/ubuntu/ wily/main libjbig-dev arm64 2.1-3.1 [23.0 kB]
Get:259 http://ftpmaster.internal/ubuntu/ wily/main liblzma-dev arm64 5.1.1alpha+20120614-2ubuntu2 [129 kB]
Get:260 http://ftpmaster.internal/ubuntu/ wily/main libtiff5-dev arm64 4.0.3-12.3ubuntu2 [246 kB]
Get:261 http://ftpmaster.internal/ubuntu/ wily/main libxkbfile1 arm64 1:1.0.9-0ubuntu1 [54.5 kB]
Get:262 http://ftpmaster.internal/ubuntu/ wily/main libxml-namespacesupport-perl all 1.11-1 [13.2 kB]
Get:263 http://ftpmaster.internal/ubuntu/ wily/main libxml-sax-base-perl all 1.07-1 [21.5 kB]
Get:264 http://ftpmaster.internal/ubuntu/ wily/main libxml-sax-perl all 0.99+dfsg-2ubuntu1 [64.6 kB]
Get:265 http://ftpmaster.internal/ubuntu/ wily/main libxml-libxml-perl arm64 2.0116+dfsg-4 [320 kB]
Get:266 http://ftpmaster.internal/ubuntu/ wily/main x11proto-scrnsaver-dev all 1.2.2-1 [25.0 kB]
Get:267 http://ftpmaster.internal/ubuntu/ wily/main libxss-dev arm64 1:1.2.2-1 [12.4 kB]
Get:268 http://ftpmaster.internal/ubuntu/ wily/main libxt-dev arm64 1:1.1.5-0ubuntu1 [374 kB]
Get:269 http://ftpmaster.internal/ubuntu/ wily/universe mpack arm64 1.6-8 [38.2 kB]
Get:270 http://ftpmaster.internal/ubuntu/ wily/main tex-common all 6.02 [591 kB]
Get:271 http://ftpmaster.internal/ubuntu/ wily/main preview-latex-style all 11.88-1ubuntu1 [186 kB]
Get:272 http://ftpmaster.internal/ubuntu/ wily/main tcl8.6 arm64 8.6.4+dfsg-2ubuntu1 [14.3 kB]
Get:273 http://ftpmaster.internal/ubuntu/ wily/main tcl8.6-dev arm64 8.6.4+dfsg-2ubuntu1 [794 kB]
Get:274 http://ftpmaster.internal/ubuntu/ wily/main texinfo arm64 6.0.0.dfsg.1-3 [574 kB]
Get:275 http://ftpmaster.internal/ubuntu/ wily/main texlive-binaries arm64 2015.20150524.37493-5build1 [6239 kB]
Get:276 http://ftpmaster.internal/ubuntu/ wily/main xdg-utils all 1.1.0~rc1-2ubuntu11 [54.1 kB]
Get:277 http://ftpmaster.internal/ubuntu/ wily/main texlive-base all 2015.20150625-1ubuntu1 [18.1 MB]
Get:278 http://ftpmaster.internal/ubuntu/ wily/main texlive-latex-base all 2015.20150625-1ubuntu1 [968 kB]
Get:279 http://ftpmaster.internal/ubuntu/ wily/main texlive-extra-utils all 2015.20150810-1 [11.1 MB]
Get:280 http://ftpmaster.internal/ubuntu/ wily/main ttf-adf-universalis all 0.20090423-2 [221 kB]
Get:281 http://ftpmaster.internal/ubuntu/ wily/main ttf-adf-gillius all 0.20090423-2 [400 kB]
Get:282 http://ftpmaster.internal/ubuntu/ wily/main ttf-adf-accanthis all 0.20090423-2 [401 kB]
Get:283 http://ftpmaster.internal/ubuntu/ wily/main fonts-stix all 1.1.1-3 [588 kB]
Get:284 http://ftpmaster.internal/ubuntu/ wily/main texlive-fonts-extra all 2015.20150810-1 [222 MB]
Get:285 http://ftpmaster.internal/ubuntu/ wily/main texlive-fonts-recommended all 2015.20150625-1ubuntu1 [5704 kB]
Get:286 http://ftpmaster.internal/ubuntu/ wily/main texlive-generic-recommended all 2015.20150625-1ubuntu1 [2624 kB]
Get:287 http://ftpmaster.internal/ubuntu/ wily/main texlive-latex-recommended all 2015.20150625-1ubuntu1 [10.2 MB]
Get:288 http://ftpmaster.internal/ubuntu/ wily/main texlive-pictures all 2015.20150625-1ubuntu1 [3089 kB]
Get:289 http://ftpmaster.internal/ubuntu/ wily/main texlive-latex-extra all 2015.20150810-1 [9689 kB]
Get:290 http://ftpmaster.internal/ubuntu/ wily/main tk8.6 arm64 8.6.4+dfsg-2ubuntu1 [12.2 kB]
Get:291 http://ftpmaster.internal/ubuntu/ wily/main tk8.6-dev arm64 8.6.4+dfsg-2ubuntu1 [614 kB]
Get:292 http://ftpmaster.internal/ubuntu/ wily/main x11-xkb-utils arm64 7.7+2 [139 kB]
Get:293 http://ftpmaster.internal/ubuntu/ wily/main xfonts-encodings all 1:1.0.4-2 [573 kB]
Get:294 http://ftpmaster.internal/ubuntu/ wily/main xfonts-utils arm64 1:7.7+3 [71.3 kB]
Get:295 http://ftpmaster.internal/ubuntu/ wily/main xfonts-base all 1:1.0.4+nmu1 [5914 kB]
Get:296 http://ftpmaster.internal/ubuntu/ wily/main xserver-common all 2:1.17.2-1ubuntu3 [27.9 kB]
Get:297 http://ftpmaster.internal/ubuntu/ wily/main xvfb arm64 2:1.17.2-1ubuntu3 [623 kB]
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Setting up libice6:arm64 (2:1.0.9-1) ...
Setting up liblcms2-2:arm64 (2.6-3ubuntu2) ...
Setting up libogg0:arm64 (1.3.2-1) ...
Setting up libxft2:arm64 (2.3.2-1) ...
Setting up libpangoxft-1.0-0:arm64 (1.36.8-3) ...
Setting up libpaper1:arm64 (1.1.24+nmu2ubuntu3) ...

Creating config file /etc/papersize with new version
Setting up libpcrecpp0v5:arm64 (2:8.35-7ubuntu5) ...
Setting up libsigsegv2:arm64 (2.10-4) ...
Setting up libsm6:arm64 (2:1.2.2-1) ...
Setting up libflac8:arm64 (1.3.1-4) ...
Setting up libvorbis0a:arm64 (1.3.4-2) ...
Setting up libvorbisenc2:arm64 (1.3.4-2) ...
Setting up libsndfile1:arm64 (1.0.25-9.1) ...
Setting up libtcl8.6:arm64 (8.6.4+dfsg-2ubuntu1) ...
Setting up libtiffxx5:arm64 (4.0.3-12.3ubuntu2) ...
Setting up libxss1:arm64 (1:1.2.2-1) ...
Setting up libtk8.6:arm64 (8.6.4+dfsg-2ubuntu1) ...
Setting up libunistring0:arm64 (0.9.3-5.2ubuntu1) ...
Setting up libwrap0:arm64 (7.6.q-25) ...
Setting up libfontenc1:arm64 (1:1.1.3-1) ...
Setting up libxfont1:arm64 (1:1.5.1-1) ...
Setting up libxt6:arm64 (1:1.1.5-0ubuntu1) ...
Setting up libxmu6:arm64 (2:1.1.2-1) ...
Setting up libxpm4:arm64 (1:3.5.11-1) ...
Setting up libxshmfence1:arm64 (1.2-1) ...
Setting up libxtst6:arm64 (2:1.2.2-1) ...
Setting up libxv1:arm64 (2:1.0.10-1) ...
Setting up libxxf86dga1:arm64 (2:1.1.4-1) ...
Setting up libxxf86vm1:arm64 (1:1.1.4-1) ...
Setting up libzzip-0-13:arm64 (0.13.62-3) ...
Setting up java-common (0.52) ...
Setting up libnspr4:arm64 (2:4.10.8-2ubuntu1) ...
Setting up tzdata-java (2015f-1) ...
Setting up libpcsclite1:arm64 (1.8.14-1ubuntu1) ...
Setting up libpulse0:arm64 (1:6.0-0ubuntu10~gcc5.3) ...
Setting up poppler-data (0.4.7-3) ...
Setting up mime-support (3.58ubuntu1) ...
Setting up libpython2.7-stdlib:arm64 (2.7.10-3) ...
Setting up python2.7 (2.7.10-3) ...
Setting up libpython-stdlib:arm64 (2.7.9-1) ...
Setting up python (2.7.9-1) ...
Setting up libmagic1:arm64 (1:5.22+15-2ubuntu1) ...
Setting up file (1:5.22+15-2ubuntu1) ...
Setting up xkb-data (2.12-1ubuntu1) ...
Setting up gettext-base (0.19.4-1ubuntu3) ...
Setting up libgirepository-1.0-1:arm64 (1.44.0-1) ...
Setting up gir1.2-glib-2.0:arm64 (1.44.0-1) ...
Setting up libdrm2:arm64 (2.4.62-1) ...
Setting up libelf1:arm64 (0.163-4ubuntu1) ...
Setting up libglib2.0-data (2.45.4-2) ...
Setting up xauth (1:1.0.9-1ubuntu2) ...
Setting up m4 (1.4.17-4) ...
Setting up libbison-dev:arm64 (2:3.0.2.dfsg-2) ...
Setting up bison (2:3.0.2.dfsg-2) ...
update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode
Setting up gettext (0.19.4-1ubuntu3) ...
Setting up intltool-debian (0.35.0+20060710.2) ...
Setting up po-debconf (1.0.18) ...
Setting up debhelper (9.20150811ubuntu1) ...
Setting up libasound2-data (1.0.29-0ubuntu1) ...
Setting up libasound2:arm64 (1.0.29-0ubuntu1) ...
Setting up libglapi-mesa:arm64 (10.6.3-1ubuntu1) ...
Setting up libx11-xcb1:arm64 (2:1.6.3-1ubuntu1) ...
Setting up libxcb-dri2-0:arm64 (1.11-0ubuntu1) ...
Setting up libxcb-dri3-0:arm64 (1.11-0ubuntu1) ...
Setting up libxcb-glx0:arm64 (1.11-0ubuntu1) ...
Setting up libxcb-present0:arm64 (1.11-0ubuntu1) ...
Setting up libxcb-sync1:arm64 (1.11-0ubuntu1) ...
Setting up libdrm-nouveau2:arm64 (2.4.62-1) ...
Setting up libdrm-radeon1:arm64 (2.4.62-1) ...
Setting up libgl1-mesa-dri:arm64 (10.6.3-1ubuntu1) ...
Setting up libgl1-mesa-glx:arm64 (10.6.3-1ubuntu1) ...
update-alternatives: using /usr/lib/aarch64-linux-gnu/mesa/ld.so.conf to provide /etc/ld.so.conf.d/aarch64-linux-gnu_GL.conf (aarch64-linux-gnu_gl_conf) in auto mode
Setting up libatspi2.0-0:arm64 (2.16.0-1ubuntu1) ...
Setting up libatk-bridge2.0-0:arm64 (2.16.0-1ubuntu1) ...
Setting up libxaw7:arm64 (2:1.0.13-1) ...
Setting up libxcb-shape0:arm64 (1.11-0ubuntu1) ...
Setting up x11-utils (7.7+3) ...
Setting up libatk-wrapper-java (0.33.0-2) ...
Setting up libatk-wrapper-java-jni:arm64 (0.33.0-2) ...
Setting up fonts-cabin (1.5-2) ...
Setting up fonts-comfortaa (2.003-1) ...
Setting up fonts-crosextra-caladea (20130214-1) ...
Setting up fonts-crosextra-carlito (20130920-1) ...
Setting up fonts-dejavu-extra (2.35-1) ...
Setting up fonts-ebgaramond (0.015+git20130628-3) ...
Setting up fonts-ebgaramond-extra (0.015+git20130628-3) ...
Setting up fonts-font-awesome (4.3.0~dfsg-2) ...
Setting up fonts-freefont-otf (20120503-4) ...
Setting up fonts-gfs-artemisia (1.1-5) ...
Setting up fonts-gfs-complutum (1.1-6) ...
Setting up fonts-gfs-didot (1.1-6) ...
Setting up fonts-gfs-neohellenic (1.1-6) ...
Setting up fonts-gfs-olga (1.1-5) ...
Setting up fonts-gfs-solomos (1.1-5) ...
Setting up fonts-inconsolata (001.010-5) ...
Setting up fonts-junicode (0.7.8-2) ...
Setting up fonts-linuxlibertine (5.3.0-2) ...
Setting up fonts-lobster (2.0-2) ...
Setting up fonts-lobstertwo (2.0-2) ...
Setting up fonts-oflb-asana-math (000.907-6) ...
Setting up fonts-sil-gentium (20081126:1.02-13) ...
Setting up fonts-sil-gentium-basic (1.1-7) ...
Setting up fonts-sil-gentiumplus (1.510-web-2) ...
Setting up libgfortran-5-dev:arm64 (5.2.1-15ubuntu1) ...
Setting up gfortran-5 (5.2.1-15ubuntu1) ...
Setting up gfortran (4:5.2.1-3ubuntu1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up gir1.2-freedesktop:arm64 (1.44.0-1) ...
Setting up gir1.2-pango-1.0:arm64 (1.36.8-3) ...
Setting up libblas-common (1.2.20110419-10) ...
Setting up libblas3 (1.2.20110419-10) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Setting up libblas-dev (1.2.20110419-10) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
Setting up libbz2-dev:arm64 (1.0.6-8) ...
Setting up libexpat1-dev:arm64 (2.1.0-7) ...
Setting up zlib1g-dev:arm64 (1:1.2.8.dfsg-2ubuntu1) ...
Setting up libpng12-dev:arm64 (1.2.51-0ubuntu3) ...
Setting up libfreetype6-dev:arm64 (2.5.2-4ubuntu1) ...
Setting up pkg-config (0.28-1ubuntu1) ...
Setting up libfontconfig1-dev:arm64 (2.11.1-0ubuntu6) ...
Setting up xorg-sgml-doctools (1:1.11-1) ...
Setting up x11proto-core-dev (7.0.28-0ubuntu1) ...
Setting up libxau-dev:arm64 (1:1.0.8-1) ...
Setting up libxdmcp-dev:arm64 (1:1.1.2-1) ...
Setting up x11proto-input-dev (2.3.1-1) ...
Setting up x11proto-kb-dev (1.0.7-0ubuntu1) ...
Setting up xtrans-dev (1.3.5-1) ...
Setting up libpthread-stubs0-dev:arm64 (0.3-4) ...
Setting up libxcb1-dev:arm64 (1.11-0ubuntu1) ...
Setting up libx11-dev:arm64 (2:1.6.3-1ubuntu1) ...
Setting up x11proto-render-dev (2:0.11.1-2) ...
Setting up libxrender-dev:arm64 (1:0.9.9-0ubuntu1) ...
Setting up x11proto-xext-dev (7.3.0-1) ...
Setting up libxext-dev:arm64 (2:1.3.3-1) ...
Setting up libice-dev:arm64 (2:1.0.9-1) ...
Setting up libsm-dev:arm64 (2:1.2.2-1) ...
Setting up libpixman-1-dev (0.32.6-3) ...
Setting up libxcb-render0-dev:arm64 (1.11-0ubuntu1) ...
Setting up libxcb-shm0-dev:arm64 (1.11-0ubuntu1) ...
Setting up libglib2.0-bin (2.45.4-2) ...
Setting up libpcre16-3:arm64 (2:8.35-7ubuntu5) ...
Setting up libpcre32-3:arm64 (2:8.35-7ubuntu5) ...
Setting up libpcre3-dev:arm64 (2:8.35-7ubuntu5) ...
Setting up libglib2.0-dev (2.45.4-2) ...
Setting up libcairo2-dev (1.14.2-2ubuntu1) ...
Setting up libcupsfilters1:arm64 (1.0.71-1ubuntu5) ...
Setting up libcupsimage2:arm64 (2.0.3-10) ...
Setting up libcurl3:arm64 (7.43.0-1ubuntu2) ...
Setting up libcurl4-openssl-dev:arm64 (7.43.0-1ubuntu2) ...
Setting up libijs-0.35:arm64 (0.35-11) ...
Setting up libjbig2dec0 (0.12-2) ...
Setting up libgs9-common (9.15+dfsg-0ubuntu4) ...
update-alternatives: using /usr/share/ghostscript/9.15 to provide /usr/share/ghostscript/current (ghostscript-current) in auto mode
Setting up libgs9 (9.15+dfsg-0ubuntu4) ...
Setting up libharfbuzz-icu0:arm64 (1.0.1-1build1) ...
Setting up libharfbuzz-gobject0:arm64 (1.0.1-1build1) ...
Setting up libharfbuzz-dev (1.0.1-1build1) ...
Setting up libintl-perl (1.24-1) ...
Setting up libjpeg-turbo8-dev:arm64 (1.3.0-0ubuntu2) ...
Setting up libjpeg8-dev:arm64 (8c-2ubuntu8) ...
Setting up libjpeg-dev:arm64 (8c-2ubuntu8) ...
Setting up libkpathsea6 (2015.20150524.37493-5build1) ...
Setting up liblapack3 (3.5.0-4) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up liblapack-dev (3.5.0-4) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
Setting up libtinfo-dev:arm64 (5.9+20150516-2ubuntu1) ...
Setting up libncurses5-dev:arm64 (5.9+20150516-2ubuntu1) ...
Setting up libxft-dev (2.3.2-1) ...
Setting up libpango1.0-dev (1.36.8-3) ...
Setting up libpaper-utils (1.1.24+nmu2ubuntu3) ...
Setting up libpoppler52:arm64 (0.33.0-0ubuntu3) ...
Setting up libpotrace0 (1.12-1) ...
Setting up libptexenc1 (2015.20150524.37493-5build1) ...
Setting up libreadline6-dev:arm64 (6.3-8ubuntu1) ...
Setting up libreadline-dev:arm64 (6.3-8ubuntu1) ...
Setting up libsynctex1 (2015.20150524.37493-5build1) ...
Setting up libtexlua52 (2015.20150524.37493-5build1) ...
Setting up libtext-unidecode-perl (1.22-1) ...
Setting up libjbig-dev:arm64 (2.1-3.1) ...
Setting up liblzma-dev:arm64 (5.1.1alpha+20120614-2ubuntu2) ...
Setting up libtiff5-dev:arm64 (4.0.3-12.3ubuntu2) ...
Setting up libxkbfile1:arm64 (1:1.0.9-0ubuntu1) ...
Setting up libxml-namespacesupport-perl (1.11-1) ...
Setting up libxml-sax-base-perl (1.07-1) ...
Setting up libxml-sax-perl (0.99+dfsg-2ubuntu1) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...

Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up libxml-libxml-perl (2.0116+dfsg-4) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up x11proto-scrnsaver-dev (1.2.2-1) ...
Setting up libxss-dev:arm64 (1:1.2.2-1) ...
Setting up libxt-dev:arm64 (1:1.1.5-0ubuntu1) ...
Setting up mpack (1.6-8) ...
Setting up tex-common (6.02) ...
update-language: texlive-base not installed and configured, doing nothing!
Setting up preview-latex-style (11.88-1ubuntu1) ...
update-language: texlive-base not installed and configured, doing nothing!
Regenerating '/var/lib/texmf/fmtutil.cnf-DEBIAN'... done.
Regenerating '/var/lib/texmf/fmtutil.cnf-TEXLIVEDIST'... done.
update-fmtutil has updated the following file(s):
	/var/lib/texmf/fmtutil.cnf-DEBIAN
	/var/lib/texmf/fmtutil.cnf-TEXLIVEDIST
If you want to activate the changes in the above file(s),
you should run fmtutil-sys or fmtutil.
Setting up tcl8.6 (8.6.4+dfsg-2ubuntu1) ...
Setting up tcl8.6-dev:arm64 (8.6.4+dfsg-2ubuntu1) ...
Setting up texinfo (6.0.0.dfsg.1-3) ...
Running mktexlsr. This may take some time. ... done.
Setting up texlive-binaries (2015.20150524.37493-5build1) ...
update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
Setting up xdg-utils (1.1.0~rc1-2ubuntu11) ...
Setting up ttf-adf-universalis (0.20090423-2) ...
Setting up ttf-adf-gillius (0.20090423-2) ...
Setting up ttf-adf-accanthis (0.20090423-2) ...
Setting up fonts-stix (1.1.1-3) ...
Setting up tk8.6 (8.6.4+dfsg-2ubuntu1) ...
Setting up tk8.6-dev:arm64 (8.6.4+dfsg-2ubuntu1) ...
Setting up x11-xkb-utils (7.7+2) ...
Setting up xfonts-encodings (1:1.0.4-2) ...
Setting up xfonts-utils (1:7.7+3) ...
Setting up xfonts-base (1:1.0.4+nmu1) ...
Setting up xserver-common (2:1.17.2-1ubuntu3) ...
Setting up xvfb (2:1.17.2-1ubuntu3) ...
Processing triggers for tex-common (6.02) ...
update-language: texlive-base not installed and configured, doing nothing!
texlive-base is not ready, skipping fmtutil-sys --all call
Setting up texlive-base (2015.20150625-1ubuntu1) ...
/usr/bin/tl-paper: setting paper size for dvips to a4.
/usr/bin/tl-paper: setting paper size for dvipdfmx to a4.
/usr/bin/tl-paper: setting paper size for xdvi to a4.
/usr/bin/tl-paper: setting paper size for pdftex to a4.
Processing triggers for tex-common (6.02) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
	This may take some time... done.
Setting up texlive-fonts-extra (2015.20150810-1) ...
Setting up texlive-fonts-recommended (2015.20150625-1ubuntu1) ...
Setting up texlive-generic-recommended (2015.20150625-1ubuntu1) ...
Setting up texlive-latex-base (2015.20150625-1ubuntu1) ...
Processing triggers for tex-common (6.02) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
	This may take some time... done.
Setting up texlive-latex-recommended (2015.20150625-1ubuntu1) ...
Setting up texlive-pictures (2015.20150625-1ubuntu1) ...
Setting up texlive-extra-utils (2015.20150810-1) ...
Processing triggers for tex-common (6.02) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Setting up texlive-latex-extra (2015.20150810-1) ...
Processing triggers for tex-common (6.02) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Setting up libnss3-nssdb (2:3.19.2-1ubuntu1) ...
Setting up libnss3:arm64 (2:3.19.2-1ubuntu1) ...
Setting up openjdk-7-jre-headless:arm64 (7u79-2.5.6-1) ...
update-alternatives: using /usr/lib/jvm/java-7-openjdk-arm64/jre/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-arm64/jre/bin/java to provide /usr/bin/java (java) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-arm64/jre/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-arm64/jre/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-arm64/jre/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-arm64/jre/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-arm64/jre/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-arm64/jre/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-arm64/jre/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-arm64/jre/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode
Setting up ca-certificates-java (20140324) ...
Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2007.pem
Adding debian:Go_Daddy_Class_2_CA.pem
Adding debian:Camerfirma_Global_Chambersign_Root.pem
Adding debian:Thawte_Server_CA.pem
Adding debian:SwissSign_Platinum_CA_-_G2.pem
Adding debian:Entrust.net_Secure_Server_CA.pem
Adding debian:QuoVadis_Root_CA.pem
Adding debian:NetLock_Express_=Class_C=_Root.pem
Adding debian:Security_Communication_Root_CA.pem
Adding debian:Network_Solutions_Certificate_Authority.pem
Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem
Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority.pem
Adding debian:Buypass_Class_2_CA_1.pem
Adding debian:Actalis_Authentication_Root_CA.pem
Adding debian:Deutsche_Telekom_Root_CA_2.pem
Adding debian:Secure_Global_CA.pem
Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:GlobalSign_Root_CA.pem
Adding debian:Visa_eCommerce_Root.pem
Adding debian:TC_TrustCenter_Universal_CA_I.pem
Adding debian:DigiCert_Assured_ID_Root_G2.pem
Adding debian:Camerfirma_Chambers_of_Commerce_Root.pem
Adding debian:VeriSign_Universal_Root_Certification_Authority.pem
Adding debian:Staat_der_Nederlanden_Root_CA.pem
Adding debian:Comodo_AAA_Services_root.pem
Adding debian:DigiCert_Global_Root_G2.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_2.pem
Adding debian:StartCom_Certification_Authority_2.pem
Adding debian:USERTrust_ECC_Certification_Authority.pem
Adding debian:Digital_Signature_Trust_Co._Global_CA_3.pem
Adding debian:Certum_Trusted_Network_CA.pem
Adding debian:UTN_USERFirst_Email_Root_CA.pem
Adding debian:thawte_Primary_Root_CA.pem
Adding debian:SwissSign_Silver_CA_-_G2.pem
Adding debian:NetLock_Qualified_=Class_QA=_Root.pem
Adding debian:GeoTrust_Global_CA.pem
Adding debian:WoSign.pem
Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem
Adding debian:Baltimore_CyberTrust_Root.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:COMODO_ECC_Certification_Authority.pem
Adding debian:Certinomis_-_Autorité_Racine.pem
Adding debian:CA_Disig_Root_R2.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority.pem
Adding debian:Verisign_Class_4_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem
Adding debian:USERTrust_RSA_Certification_Authority.pem
Adding debian:DST_ACES_CA_X6.pem
Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem
Adding debian:IdenTrust_Commercial_Root_CA_1.pem
Adding debian:Certigna.pem
Adding debian:Digital_Signature_Trust_Co._Global_CA_1.pem
Adding debian:Cybertrust_Global_Root.pem
Adding debian:ValiCert_Class_2_VA.pem
Adding debian:QuoVadis_Root_CA_3_G3.pem
Adding debian:Swisscom_Root_CA_1.pem
Adding debian:Comodo_Trusted_Services_root.pem
Adding debian:China_Internet_Network_Information_Center_EV_Certificates_Root.pem
Adding debian:AddTrust_Qualified_Certificates_Root.pem
Adding debian:RSA_Root_Certificate_1.pem
Adding debian:Starfield_Class_2_CA.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem
Adding debian:TWCA_Root_Certification_Authority.pem
Adding debian:Entrust_Root_Certification_Authority.pem
Adding debian:Equifax_Secure_eBusiness_CA_1.pem
Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem
Adding debian:Equifax_Secure_Global_eBusiness_CA.pem
Adding debian:DigiCert_Global_Root_CA.pem
Adding debian:TC_TrustCenter_Class_2_CA_II.pem
Adding debian:XRamp_Global_CA_Root.pem
Adding debian:AffirmTrust_Premium_ECC.pem
Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
Adding debian:CA_Disig.pem
Adding debian:GeoTrust_Universal_CA_2.pem
Adding debian:StartCom_Certification_Authority_G2.pem
Adding debian:ComSign_Secured_CA.pem
Adding debian:RSA_Security_2048_v3.pem
Adding debian:GeoTrust_Primary_Certification_Authority.pem
Adding debian:GlobalSign_Root_CA_-_R3.pem
Adding debian:ComSign_CA.pem
Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem
Adding debian:CA_Disig_Root_R1.pem
Adding debian:DigiCert_Global_Root_G3.pem
Adding debian:UTN_DATACorp_SGC_Root_CA.pem
Adding debian:GlobalSign_Root_CA_-_R2.pem
Adding debian:Buypass_Class_3_Root_CA.pem
Adding debian:StartCom_Certification_Authority.pem
Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
Adding debian:thawte_Primary_Root_CA_-_G3.pem
Adding debian:DST_Root_CA_X3.pem
Adding debian:ValiCert_Class_1_VA.pem
Adding debian:Sonera_Class_1_Root_CA.pem
Adding debian:CFCA_EV_ROOT.pem
Adding debian:Certplus_Class_2_Primary_CA.pem
Adding debian:ePKI_Root_Certification_Authority.pem
Adding debian:DigiCert_Assured_ID_Root_CA.pem
Adding debian:TÜBİTAK_UEKAE_Kök_Sertifika_Hizmet_Sağlayıcısı_-_Sürüm_3.pem
Adding debian:ACEDICOM_Root.pem
Adding debian:Swisscom_Root_EV_CA_2.pem
Adding debian:Trustis_FPS_Root_CA.pem
Adding debian:Root_CA_Generalitat_Valenciana.pem
Adding debian:SecureSign_RootCA11.pem
Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem
Adding debian:Swisscom_Root_CA_2.pem
Adding debian:Equifax_Secure_CA.pem
Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
Adding debian:COMODO_Certification_Authority.pem
Adding debian:Global_Chambersign_Root_-_2008.pem
Adding debian:Microsec_e-Szigno_Root_CA.pem
Adding debian:EE_Certification_Centre_Root_CA.pem
Adding debian:certSIGN_ROOT_CA.pem
Adding debian:GeoTrust_Universal_CA.pem
Adding debian:UTN_USERFirst_Hardware_Root_CA.pem
Adding debian:AffirmTrust_Networking.pem
Adding debian:AC_Raíz_Certicámara_S.A..pem
Adding debian:Chambers_of_Commerce_Root_-_2008.pem
Adding debian:Thawte_Premium_Server_CA.pem
Adding debian:T-TeleSec_GlobalRoot_Class_2.pem
Adding debian:GeoTrust_Global_CA_2.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem
Adding debian:Certum_Root_CA.pem
Adding debian:AddTrust_External_Root.pem
Adding debian:EBG_Elektronik_Sertifika_Hizmet_Sağlayıcısı.pem
Adding debian:TURKTRUST_Certificate_Services_Provider_Root_1.pem
Adding debian:Taiwan_GRCA.pem
Adding debian:NetLock_Notary_=Class_A=_Root.pem
Adding debian:DigiCert_Assured_ID_Root_G3.pem
Adding debian:Sonera_Class_2_Root_CA.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem
Adding debian:AddTrust_Low-Value_Services_Root.pem
Adding debian:SecureTrust_CA.pem
Adding debian:Juur-SK.pem
Adding debian:WellsSecure_Public_Root_Certificate_Authority.pem
Adding debian:QuoVadis_Root_CA_1_G3.pem
Adding debian:Atos_TrustedRoot_2011.pem
Adding debian:Security_Communication_EV_RootCA1.pem
Adding debian:QuoVadis_Root_CA_2_G3.pem
Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem
Adding debian:ACCVRAIZ1.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem
Adding debian:QuoVadis_Root_CA_3.pem
Adding debian:Hongkong_Post_Root_CA_1.pem
Adding debian:spi-cacert-2008.pem
Adding debian:QuoVadis_Root_CA_2.pem
Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
Adding debian:S-TRUST_Universal_Root_CA.pem
Adding debian:TWCA_Global_Root_CA.pem
Adding debian:Buypass_Class_3_CA_1.pem
Adding debian:SG_TRUST_SERVICES_RACINE.pem
Adding debian:Izenpe.com.pem
Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:CNNIC_ROOT.pem
Adding debian:E-Tugra_Certification_Authority.pem
Adding debian:ApplicationCA_-_Japanese_Government.pem
Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem
Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
Adding debian:Comodo_Secure_Services_root.pem
Adding debian:GTE_CyberTrust_Global_Root.pem
Adding debian:thawte_Primary_Root_CA_-_G2.pem
Adding debian:DigiCert_Trusted_Root_G4.pem
Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2.pem
Adding debian:TC_TrustCenter_Class_3_CA_II.pem
Adding debian:TeliaSonera_Root_CA_v1.pem
Adding debian:PSCProcert.pem
Adding debian:Buypass_Class_2_Root_CA.pem
Adding debian:IGC_A.pem
Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
Adding debian:WoSign_China.pem
Adding debian:NetLock_Business_=Class_B=_Root.pem
Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem
Adding debian:Security_Communication_RootCA2.pem
Adding debian:COMODO_RSA_Certification_Authority.pem
Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem
Adding debian:AffirmTrust_Premium.pem
Adding debian:SwissSign_Gold_CA_-_G2.pem
Adding debian:EC-ACC.pem
Adding debian:S-TRUST_Authentication_and_Encryption_Root_CA_2005_PN.pem
Adding debian:AffirmTrust_Commercial.pem
Adding debian:Entrust_Root_Certification_Authority_-_G2.pem
Adding debian:AddTrust_Public_Services_Root.pem
Adding debian:A-Trust-nQual-03.pem
done.
Setting up default-jre-headless (2:1.7-52) ...
Setting up openjdk-7-jre:arm64 (7u79-2.5.6-1) ...
update-alternatives: using /usr/lib/jvm/java-7-openjdk-arm64/jre/bin/policytool to provide /usr/bin/policytool (policytool) in auto mode
Setting up default-jre (2:1.7-52) ...
Setting up openjdk-7-jdk:arm64 (7u79-2.5.6-1) ...
update-alternatives: using /usr/lib/jvm/java-7-openjdk-arm64/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-arm64/bin/wsimport to provide /usr/bin/wsimport (wsimport) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-arm64/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-arm64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-arm64/bin/jsadebugd to provide /usr/bin/jsadebugd (jsadebugd) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-arm64/bin/native2ascii to provide /usr/bin/native2ascii (native2ascii) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-arm64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-arm64/bin/javac to provide /usr/bin/javac (javac) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-arm64/bin/javah to provide /usr/bin/javah (javah) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-arm64/bin/idlj to provide /usr/bin/idlj (idlj) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-arm64/bin/jps to provide /usr/bin/jps (jps) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-arm64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-arm64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-arm64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-arm64/bin/jhat to provide /usr/bin/jhat (jhat) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-arm64/bin/javap to provide /usr/bin/javap (javap) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-arm64/bin/jar to provide /usr/bin/jar (jar) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-arm64/bin/xjc to provide /usr/bin/xjc (xjc) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-arm64/bin/schemagen to provide /usr/bin/schemagen (schemagen) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-arm64/bin/extcheck to provide /usr/bin/extcheck (extcheck) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-arm64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-arm64/bin/appletviewer to provide /usr/bin/appletviewer (appletviewer) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-arm64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-arm64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-arm64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-arm64/bin/wsgen to provide /usr/bin/wsgen (wsgen) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-arm64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-arm64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode
Setting up default-jdk (2:1.7-52) ...
Setting up sbuild-build-depends-r-base-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.21-0ubuntu4) ...
Processing triggers for systemd (224-1ubuntu3) ...
Processing triggers for ca-certificates (20150426ubuntu1) ...
Updating certificates in /etc/ssl/certs...
7 added, 7 removed; done.
Running hooks in /etc/ca-certificates/update.d...

Replacing debian:Entrust.net_Secure_Server_CA.pem
Replacing debian:GTE_CyberTrust_Global_Root.pem
Replacing debian:RSA_Root_Certificate_1.pem
Replacing debian:Thawte_Premium_Server_CA.pem
Replacing debian:Thawte_Server_CA.pem
Replacing debian:ValiCert_Class_1_VA.pem
Replacing debian:ValiCert_Class_2_VA.pem
Removing debian:Entrust.net_Secure_Server_CA.pem
Removing debian:GTE_CyberTrust_Global_Root.pem
Removing debian:RSA_Root_Certificate_1.pem
Removing debian:Thawte_Premium_Server_CA.pem
Removing debian:Thawte_Server_CA.pem
Removing debian:ValiCert_Class_1_VA.pem
Removing debian:ValiCert_Class_2_VA.pem
done.
done.

┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment                                                            │
└──────────────────────────────────────────────────────────────────────────────┘

Kernel: Linux 3.13.0-61-generic arm64 (aarch64)
Toolchain package versions: binutils_2.25.1-1ubuntu1 dpkg-dev_1.18.2ubuntu1 g++-5_5.2.1-15ubuntu1 gcc-5_5.2.1-15ubuntu1 libc6-dev_2.21-0ubuntu4 libstdc++-5-dev_5.2.1-15ubuntu1 libstdc++6_5.2.1-15ubuntu1 linux-libc-dev_4.1.0-3.3
Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.19-1 apt_1.0.9.10ubuntu6 apt-transport-https_1.0.9.10ubuntu6 base-files_7.2ubuntu10 base-passwd_3.5.38 bash_4.3-11ubuntu3 bash-completion_1:2.1-4.1ubuntu2 binutils_2.25.1-1ubuntu1 bison_2:3.0.2.dfsg-2 bsdmainutils_9.0.6ubuntu1 bsdutils_1:2.26.2-6ubuntu3 build-essential_12.1ubuntu1 bzip2_1.0.6-8 ca-certificates_20150426ubuntu1 ca-certificates-java_20140324 coreutils_8.23-3ubuntu1 cpp_4:5.2.1-3ubuntu1 cpp-5_5.2.1-15ubuntu1 dash_0.5.7-4ubuntu2 debconf_1.5.57ubuntu1 debhelper_9.20150811ubuntu1 debianutils_4.5.1 default-jdk_2:1.7-52 default-jre_2:1.7-52 default-jre-headless_2:1.7-52 diffutils_1:3.3-1 dmsetup_2:1.02.99-1ubuntu1 dpkg_1.18.2ubuntu1 dpkg-dev_1.18.2ubuntu1 e2fslibs_1.42.12-1ubuntu2 e2fsprogs_1.42.12-1ubuntu2 fakeroot_1.20.2-1ubuntu1 file_1:5.22+15-2ubuntu1 findutils_4.4.2-9build1 fontconfig_2.11.1-0ubuntu6 fontconfig-config_2.11.1-0ubuntu6 fonts-cabin_1.5-2 fonts-comfortaa_2.003-1 fonts-crosextra-caladea_20130214-1 fonts-crosextra-carlito_20130920-1 fonts-dejavu-core_2.35-1 fonts-dejavu-extra_2.35-1 fonts-droid_1:4.4.4r2-6ubuntu1 fonts-ebgaramond_0.015+git20130628-3 fonts-ebgaramond-extra_0.015+git20130628-3 fonts-font-awesome_4.3.0~dfsg-2 fonts-freefont-otf_20120503-4 fonts-freefont-ttf_20120503-4 fonts-gfs-artemisia_1.1-5 fonts-gfs-complutum_1.1-6 fonts-gfs-didot_1.1-6 fonts-gfs-neohellenic_1.1-6 fonts-gfs-olga_1.1-5 fonts-gfs-solomos_1.1-5 fonts-inconsolata_001.010-5 fonts-junicode_0.7.8-2 fonts-lato_2.0-1 fonts-linuxlibertine_5.3.0-2 fonts-lobster_2.0-2 fonts-lobstertwo_2.0-2 fonts-oflb-asana-math_000.907-6 fonts-roboto_1:4.4.4r2-6ubuntu1 fonts-sil-gentium_20081126:1.02-13 fonts-sil-gentium-basic_1.1-7 fonts-sil-gentiumplus_1.510-web-2 fonts-stix_1.1.1-3 g++_4:5.2.1-3ubuntu1 g++-5_5.2.1-15ubuntu1 gcc_4:5.2.1-3ubuntu1 gcc-5_5.2.1-15ubuntu1 gcc-5-base_5.2.1-15ubuntu1 gettext_0.19.4-1ubuntu3 gettext-base_0.19.4-1ubuntu3 gfortran_4:5.2.1-3ubuntu1 gfortran-5_5.2.1-15ubuntu1 gir1.2-freedesktop_1.44.0-1 gir1.2-glib-2.0_1.44.0-1 gir1.2-pango-1.0_1.36.8-3 gnupg_1.4.18-7ubuntu1 gpgv_1.4.18-7ubuntu1 grep_2.21-2 groff-base_1.22.3-1 gzip_1.6-4ubuntu1 hostname_3.15ubuntu2 init_1.23ubuntu3 initscripts_2.88dsf-59.2ubuntu1 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.2 java-common_0.52 libacl1_2.2.52-2 libapparmor1_2.10-0ubuntu3 libapt-pkg4.12_1.0.9.10ubuntu1 libapt-pkg4.16_1.0.9.10ubuntu6 libasan2_5.2.1-15ubuntu1 libasn1-8-heimdal_1.6~rc2+dfsg-10 libasound2_1.0.29-0ubuntu1 libasound2-data_1.0.29-0ubuntu1 libasprintf0v5_0.19.4-1ubuntu3 libasyncns0_0.8-5build1 libatk-bridge2.0-0_2.16.0-1ubuntu1 libatk-wrapper-java_0.33.0-2 libatk-wrapper-java-jni_0.33.0-2 libatk1.0-0_2.16.0-2 libatk1.0-data_2.16.0-2 libatomic1_5.2.1-15ubuntu1 libatspi2.0-0_2.16.0-1ubuntu1 libattr1_1:2.4.47-2 libaudit-common_1:2.4.2-1ubuntu1 libaudit1_1:2.4.2-1ubuntu1 libavahi-client3_0.6.31-4ubuntu4 libavahi-common-data_0.6.31-4ubuntu4 libavahi-common3_0.6.31-4ubuntu4 libbison-dev_2:3.0.2.dfsg-2 libblas-common_1.2.20110419-10 libblas-dev_1.2.20110419-10 libblas3_1.2.20110419-10 libblkid1_2.26.2-6ubuntu3 libbz2-1.0_1.0.6-8 libbz2-dev_1.0.6-8 libc-bin_2.21-0ubuntu4 libc-dev-bin_2.21-0ubuntu4 libc6_2.21-0ubuntu4 libc6-dev_2.21-0ubuntu4 libcairo-gobject2_1.14.2-2ubuntu1 libcairo-script-interpreter2_1.14.2-2ubuntu1 libcairo2_1.14.2-2ubuntu1 libcairo2-dev_1.14.2-2ubuntu1 libcap2_1:2.24-9 libcap2-bin_1:2.24-9 libcc1-0_5.2.1-15ubuntu1 libcomerr2_1.42.12-1ubuntu2 libcroco3_0.6.8-3 libcryptsetup4_2:1.6.6-5ubuntu1 libcups2_2.0.3-10 libcupsfilters1_1.0.71-1ubuntu5 libcupsimage2_2.0.3-10 libcurl3_7.43.0-1ubuntu2 libcurl3-gnutls_7.43.0-1ubuntu2 libcurl4-openssl-dev_7.43.0-1ubuntu2 libdatrie1_0.2.9-2 libdb5.3_5.3.28-9 libdbus-1-3_1.8.12-1ubuntu5 libdebconfclient0_0.192ubuntu1 libdevmapper1.02.1_2:1.02.99-1ubuntu1 libdpkg-perl_1.18.2ubuntu1 libdrm-nouveau2_2.4.62-1 libdrm-radeon1_2.4.62-1 libdrm2_2.4.62-1 libelf1_0.163-4ubuntu1 libexpat1_2.1.0-7 libexpat1-dev_2.1.0-7 libfakeroot_1.20.2-1ubuntu1 libfdisk1_2.26.2-6ubuntu3 libffi6_3.2.1-3 libflac8_1.3.1-4 libfontconfig1_2.11.1-0ubuntu6 libfontconfig1-dev_2.11.1-0ubuntu6 libfontenc1_1:1.1.3-1 libfreetype6_2.5.2-4ubuntu1 libfreetype6-dev_2.5.2-4ubuntu1 libgcc-5-dev_5.2.1-15ubuntu1 libgcc1_1:5.2.1-15ubuntu1 libgcrypt20_1.6.3-2ubuntu1 libgdbm3_1.8.3-13.1 libgdk-pixbuf2.0-0_2.31.5-1 libgdk-pixbuf2.0-common_2.31.5-1 libgfortran-5-dev_5.2.1-15ubuntu1 libgfortran3_5.2.1-15ubuntu1 libgif4_4.1.6-11 libgirepository-1.0-1_1.44.0-1 libgl1-mesa-dri_10.6.3-1ubuntu1 libgl1-mesa-glx_10.6.3-1ubuntu1 libglapi-mesa_10.6.3-1ubuntu1 libglib2.0-0_2.45.4-2 libglib2.0-bin_2.45.4-2 libglib2.0-data_2.45.4-2 libglib2.0-dev_2.45.4-2 libgmp10_2:6.0.0+dfsg-7 libgnutls-deb0-28_3.3.15-5ubuntu1 libgomp1_5.2.1-15ubuntu1 libgpg-error0_1.19-2 libgraphite2-3_1.2.4-3ubuntu1 libgs9_9.15+dfsg-0ubuntu4 libgs9-common_9.15+dfsg-0ubuntu4 libgssapi-krb5-2_1.13.2+dfsg-2 libgssapi3-heimdal_1.6~rc2+dfsg-10 libgtk2.0-0_2.24.28-0ubuntu1 libgtk2.0-common_2.24.28-0ubuntu1 libharfbuzz-dev_1.0.1-1build1 libharfbuzz-gobject0_1.0.1-1build1 libharfbuzz-icu0_1.0.1-1build1 libharfbuzz0b_1.0.1-1build1 libhcrypto4-heimdal_1.6~rc2+dfsg-10 libheimbase1-heimdal_1.6~rc2+dfsg-10 libheimntlm0-heimdal_1.6~rc2+dfsg-10 libhogweed4_3.1.1-4 libhx509-5-heimdal_1.6~rc2+dfsg-10 libice-dev_2:1.0.9-1 libice6_2:1.0.9-1 libicu55_55.1-4 libidn11_1.28-1ubuntu2 libijs-0.35_0.35-11 libintl-perl_1.24-1 libisl13_0.14-2 libitm1_5.2.1-15ubuntu1 libjasper1_1.900.1-debian1-2.4 libjbig-dev_2.1-3.1 libjbig0_2.1-3.1 libjbig2dec0_0.12-2 libjpeg-dev_8c-2ubuntu8 libjpeg-turbo8_1.3.0-0ubuntu2 libjpeg-turbo8-dev_1.3.0-0ubuntu2 libjpeg8_8c-2ubuntu8 libjpeg8-dev_8c-2ubuntu8 libjson-c2_0.11-4ubuntu2 libk5crypto3_1.13.2+dfsg-2 libkeyutils1_1.5.9-5ubuntu1 libkmod2_18-3ubuntu1 libkpathsea6_2015.20150524.37493-5build1 libkrb5-26-heimdal_1.6~rc2+dfsg-10 libkrb5-3_1.13.2+dfsg-2 libkrb5support0_1.13.2+dfsg-2 liblapack-dev_3.5.0-4 liblapack3_3.5.0-4 liblcms2-2_2.6-3ubuntu2 libldap-2.4-2_2.4.41+dfsg-1ubuntu1 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblzma-dev_5.1.1alpha+20120614-2ubuntu2 liblzma5_5.1.1alpha+20120614-2ubuntu2 liblzo2-2_2.08-1.2 libmagic1_1:5.22+15-2ubuntu1 libmount1_2.26.2-6ubuntu3 libmpc3_1.0.3-1 libmpfr4_3.1.3-1 libncurses5_5.9+20150516-2ubuntu1 libncurses5-dev_5.9+20150516-2ubuntu1 libncursesw5_5.9+20150516-2ubuntu1 libnettle6_3.1.1-4 libnih-dbus1_1.0.3-4ubuntu27 libnih1_1.0.3-4ubuntu27 libnspr4_2:4.10.8-2ubuntu1 libnss3_2:3.19.2-1ubuntu1 libnss3-nssdb_2:3.19.2-1ubuntu1 libogg0_1.3.2-1 libp11-kit0_0.23.1-3 libpam-modules_1.1.8-3.1ubuntu3 libpam-modules-bin_1.1.8-3.1ubuntu3 libpam-runtime_1.1.8-3.1ubuntu3 libpam0g_1.1.8-3.1ubuntu3 libpango-1.0-0_1.36.8-3 libpango1.0-dev_1.36.8-3 libpangocairo-1.0-0_1.36.8-3 libpangoft2-1.0-0_1.36.8-3 libpangoxft-1.0-0_1.36.8-3 libpaper-utils_1.1.24+nmu2ubuntu3 libpaper1_1.1.24+nmu2ubuntu3 libpcre16-3_2:8.35-7ubuntu5 libpcre3_2:8.35-7ubuntu5 libpcre3-dev_2:8.35-7ubuntu5 libpcre32-3_2:8.35-7ubuntu5 libpcrecpp0v5_2:8.35-7ubuntu5 libpcsclite1_1.8.14-1ubuntu1 libpipeline1_1.4.0-1 libpixman-1-0_0.32.6-3 libpixman-1-dev_0.32.6-3 libpng12-0_1.2.51-0ubuntu3 libpng12-dev_1.2.51-0ubuntu3 libpoppler52_0.33.0-0ubuntu3 libpotrace0_1.12-1 libprocps3_1:3.3.9-1ubuntu8 libptexenc1_2015.20150524.37493-5build1 libpthread-stubs0-dev_0.3-4 libpulse0_1:6.0-0ubuntu10~gcc5.3 libpython-stdlib_2.7.9-1 libpython2.7-minimal_2.7.10-3 libpython2.7-stdlib_2.7.10-3 libreadline-dev_6.3-8ubuntu1 libreadline6_6.3-8ubuntu1 libreadline6-dev_6.3-8ubuntu1 libroken18-heimdal_1.6~rc2+dfsg-10 librtmp1_2.4+20150115.gita107cef-1build1 libsasl2-2_2.1.26.dfsg1-13 libsasl2-modules-db_2.1.26.dfsg1-13 libseccomp2_2.2.1-2ubuntu1 libselinux1_2.3-2 libsemanage-common_2.3-1build1 libsemanage1_2.3-1build1 libsepol1_2.3-2 libsigsegv2_2.10-4 libslang2_2.3.0-2ubuntu1 libsm-dev_2:1.2.2-1 libsm6_2:1.2.2-1 libsmartcols1_2.26.2-6ubuntu3 libsndfile1_1.0.25-9.1 libsqlite3-0_3.8.11.1-1 libss2_1.42.12-1ubuntu2 libssl1.0.0_1.0.2d-0ubuntu1 libstdc++-5-dev_5.2.1-15ubuntu1 libstdc++6_5.2.1-15ubuntu1 libsynctex1_2015.20150524.37493-5build1 libsystemd0_224-1ubuntu3 libtasn1-6_4.5-2 libtcl8.6_8.6.4+dfsg-2ubuntu1 libtexlua52_2015.20150524.37493-5build1 libtext-unidecode-perl_1.22-1 libthai-data_0.1.22-2 libthai0_0.1.22-2 libtiff5_4.0.3-12.3ubuntu2 libtiff5-dev_4.0.3-12.3ubuntu2 libtiffxx5_4.0.3-12.3ubuntu2 libtimedate-perl_2.3000-2 libtinfo-dev_5.9+20150516-2ubuntu1 libtinfo5_5.9+20150516-2ubuntu1 libtk8.6_8.6.4+dfsg-2ubuntu1 libubsan0_5.2.1-15ubuntu1 libudev1_224-1ubuntu3 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-27 libustr-1.0-1_1.0.4-5 libuuid1_2.26.2-6ubuntu3 libvorbis0a_1.3.4-2 libvorbisenc2_1.3.4-2 libwind0-heimdal_1.6~rc2+dfsg-10 libwrap0_7.6.q-25 libx11-6_2:1.6.3-1ubuntu1 libx11-data_2:1.6.3-1ubuntu1 libx11-dev_2:1.6.3-1ubuntu1 libx11-xcb1_2:1.6.3-1ubuntu1 libxau-dev_1:1.0.8-1 libxau6_1:1.0.8-1 libxaw7_2:1.0.13-1 libxcb-dri2-0_1.11-0ubuntu1 libxcb-dri3-0_1.11-0ubuntu1 libxcb-glx0_1.11-0ubuntu1 libxcb-present0_1.11-0ubuntu1 libxcb-render0_1.11-0ubuntu1 libxcb-render0-dev_1.11-0ubuntu1 libxcb-shape0_1.11-0ubuntu1 libxcb-shm0_1.11-0ubuntu1 libxcb-shm0-dev_1.11-0ubuntu1 libxcb-sync1_1.11-0ubuntu1 libxcb1_1.11-0ubuntu1 libxcb1-dev_1.11-0ubuntu1 libxcomposite1_1:0.4.4-1 libxcursor1_1:1.1.14-1 libxdamage1_1:1.1.4-2 libxdmcp-dev_1:1.1.2-1 libxdmcp6_1:1.1.2-1 libxext-dev_2:1.3.3-1 libxext6_2:1.3.3-1 libxfixes3_1:5.0.1-2 libxfont1_1:1.5.1-1 libxft-dev_2.3.2-1 libxft2_2.3.2-1 libxi6_2:1.7.4-1 libxinerama1_2:1.1.3-1 libxkbfile1_1:1.0.9-0ubuntu1 libxml-libxml-perl_2.0116+dfsg-4 libxml-namespacesupport-perl_1.11-1 libxml-sax-base-perl_1.07-1 libxml-sax-perl_0.99+dfsg-2ubuntu1 libxml2_2.9.2+dfsg1-3ubuntu1 libxmu6_2:1.1.2-1 libxmuu1_2:1.1.2-1 libxpm4_1:3.5.11-1 libxrandr2_2:1.5.0-1 libxrender-dev_1:0.9.9-0ubuntu1 libxrender1_1:0.9.9-0ubuntu1 libxshmfence1_1.2-1 libxss-dev_1:1.2.2-1 libxss1_1:1.2.2-1 libxt-dev_1:1.1.5-0ubuntu1 libxt6_1:1.1.5-0ubuntu1 libxtst6_2:1.2.2-1 libxv1_2:1.0.10-1 libxxf86dga1_2:1.1.4-1 libxxf86vm1_1:1.1.4-1 libzzip-0-13_0.13.62-3 linux-libc-dev_4.1.0-3.3 lockfile-progs_0.1.17 login_1:4.1.5.1-1.1ubuntu7 lsb-base_4.1+Debian11ubuntu8 m4_1.4.17-4 make_4.0-8.1 man-db_2.7.0.2-5 mawk_1.3.3-17ubuntu2 mime-support_3.58ubuntu1 mount_2.26.2-6ubuntu3 mpack_1.6-8 multiarch-support_2.21-0ubuntu4 ncurses-base_5.9+20150516-2ubuntu1 ncurses-bin_5.9+20150516-2ubuntu1 openjdk-7-jdk_7u79-2.5.6-1 openjdk-7-jre_7u79-2.5.6-1 openjdk-7-jre-headless_7u79-2.5.6-1 openssl_1.0.2d-0ubuntu1 optipng_0.7.5-1 passwd_1:4.1.5.1-1.1ubuntu7 patch_2.7.5-1 perl_5.20.2-6 perl-base_5.20.2-6 perl-modules_5.20.2-6 pkg-config_0.28-1ubuntu1 pkg-create-dbgsym_0.69 pkgbinarymangler_121 po-debconf_1.0.18 policyrcd-script-zg2_0.1-2 poppler-data_0.4.7-3 preview-latex-style_11.88-1ubuntu1 procps_1:3.3.9-1ubuntu8 python_2.7.9-1 python-minimal_2.7.9-1 python2.7_2.7.10-3 python2.7-minimal_2.7.10-3 readline-common_6.3-8ubuntu1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-base-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 shared-mime-info_1.3-1 systemd_224-1ubuntu3 systemd-sysv_224-1ubuntu3 sysv-rc_2.88dsf-59.2ubuntu1 sysvinit-utils_2.88dsf-59.2ubuntu1 tar_1.27.1-2 tcl8.6_8.6.4+dfsg-2ubuntu1 tcl8.6-dev_8.6.4+dfsg-2ubuntu1 tex-common_6.02 texinfo_6.0.0.dfsg.1-3 texlive-base_2015.20150625-1ubuntu1 texlive-binaries_2015.20150524.37493-5build1 texlive-extra-utils_2015.20150810-1 texlive-fonts-extra_2015.20150810-1 texlive-fonts-recommended_2015.20150625-1ubuntu1 texlive-generic-recommended_2015.20150625-1ubuntu1 texlive-latex-base_2015.20150625-1ubuntu1 texlive-latex-extra_2015.20150810-1 texlive-latex-recommended_2015.20150625-1ubuntu1 texlive-pictures_2015.20150625-1ubuntu1 tk8.6_8.6.4+dfsg-2ubuntu1 tk8.6-dev_8.6.4+dfsg-2ubuntu1 ttf-adf-accanthis_0.20090423-2 ttf-adf-gillius_0.20090423-2 ttf-adf-universalis_0.20090423-2 tzdata_2015f-1 tzdata-java_2015f-1 ubuntu-keyring_2012.05.19 ucf_3.0030 udev_224-1ubuntu3 util-linux_2.26.2-6ubuntu3 x11-common_1:7.7+7ubuntu4 x11-utils_7.7+3 x11-xkb-utils_7.7+2 x11proto-core-dev_7.0.28-0ubuntu1 x11proto-input-dev_2.3.1-1 x11proto-kb-dev_1.0.7-0ubuntu1 x11proto-render-dev_2:0.11.1-2 x11proto-scrnsaver-dev_1.2.2-1 x11proto-xext-dev_7.3.0-1 xauth_1:1.0.9-1ubuntu2 xdg-utils_1.1.0~rc1-2ubuntu11 xfonts-base_1:1.0.4+nmu1 xfonts-encodings_1:1.0.4-2 xfonts-utils_1:7.7+3 xkb-data_2.12-1ubuntu1 xorg-sgml-doctools_1:1.11-1 xserver-common_2:1.17.2-1ubuntu3 xtrans-dev_1.3.5-1 xvfb_2:1.17.2-1ubuntu3 xz-utils_5.1.1alpha+20120614-2ubuntu2 zlib1g_1:1.2.8.dfsg-2ubuntu1 zlib1g-dev_1:1.2.8.dfsg-2ubuntu1

┌──────────────────────────────────────────────────────────────────────────────┐
│ Build                                                                        │
└──────────────────────────────────────────────────────────────────────────────┘


Unpack source
─────────────

gpgv: Signature made Fri Aug 14 10:26:51 2015 UTC using RSA key ID AB99A21A
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./r-base_3.2.2-1.dsc
dpkg-source: info: extracting r-base in r-base-3.2.2
dpkg-source: info: unpacking r-base_3.2.2.orig.tar.gz
dpkg-source: info: applying r-base_3.2.2-1.diff.gz
dpkg-source: info: upstream files that have been modified: 
 r-base-3.2.2/src/modules/X11/devX11.c
 r-base-3.2.2/src/modules/X11/rlogo_icon.h

Check disc space
────────────────

Sufficient free space for build

User Environment
────────────────

DEB_BUILD_OPTIONS=parallel=8
HOME=/home/buildd
LANG=C
LOGNAME=buildd
MAIL=/var/mail/buildd
OLDPWD=/
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
PWD=/«PKGBUILDDIR»
SHELL=/bin/sh
SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/«PKGBUILDDIR»' && 'env'
SUDO_GID=2501
SUDO_UID=2001
SUDO_USER=buildd
TERM=unknown
USER=buildd
USERNAME=root

dpkg-buildpackage
─────────────────

dpkg-buildpackage: source package r-base
dpkg-buildpackage: source version 3.2.2-1
dpkg-buildpackage: source distribution unstable
 dpkg-source --before-build r-base-3.2.2
dpkg-buildpackage: host architecture arm64
 fakeroot debian/rules clean
*** clean ***
dh_testdir
dh_testroot
rm -f	configure-stamp \
	build-stamp build-indep-stamp build-arch-stamp \
	make-stamp make-arch-stamp make-indep-stamp \
	install-indep-stamp install-arch-stamp \
	check-stamp 
[ ! -f Makefile ] || /usr/bin/make distclean
rm -f `find . -name "*~"`
rm -rf debian/tmp debian/files* core debian/substvars
rm -f doc/html/function.html doc/html/packages.html
rm -f modules/*.so src/unix/Rscript
dh_clean
 debian/rules build-arch
*** configure ***
#automake
#autoconf
dh_testdir
R_PAPERSIZE=letter				\
R_BROWSER=xdg-open				\
PAGER=/usr/bin/pager				\
PERL=/usr/bin/perl				\
JAVA_HOME=/usr/lib/jvm/default-java             \
R_UNZIPCMD=/usr/bin/unzip			\
R_ZIPCMD=/usr/bin/zip				\
R_PRINTCMD=/usr/bin/lpr				\
LIBnn=lib					\
AWK=/usr/bin/awk                                \
CC="gcc -std=gnu99"					\
CXX=g++						\
F77=gfortran					\
FC=gfortran					\
CFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g"				\
CXXFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g"				\
FFLAGS="-g -O2 -fstack-protector-strong"				\
FCFLAGS="-g -O2 -fstack-protector-strong"				\
CPPFLAGS=					\
LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro"				\
FLIBS=						\
rsharedir=/usr/share/R/share			\
rincludedir=/usr/share/R/include		\
rdocdir=/usr/share/R/doc			\
./configure --prefix=/usr			\
	    --with-cairo			\
	    --with-jpeglib			\
	    --with-readline			\
	    --with-tcltk			\
	    --with-system-bzlib			\
	    --with-system-pcre			\
	    --with-system-zlib			\
	    --mandir=/usr/share/man		\
	    --infodir=/usr/share/info		\
	    --datadir=/usr/share/R/share	\
	    --includedir=/usr/share/R/include	\
	    --with-blas		\
	    --with-lapack		\
	    --enable-R-profiling		\
	    --enable-R-shlib			\
	    --enable-memory-profiling		\
	    --without-recommended-packages	\
	    --build aarch64-linux-gnu
checking build system type... aarch64-unknown-linux-gnu
checking host system type... aarch64-unknown-linux-gnu
loading site script './config.site'
loading build-specific script './config.site'
checking for pwd... /bin/pwd
checking whether builddir is srcdir... yes
checking for working aclocal... missing
checking for working autoconf... missing
checking for working automake... missing
checking for working autoheader... missing
checking for gawk... /usr/bin/awk
checking whether ln -s works... yes
checking for bison... bison -y
checking for ar... ar
checking for a BSD-compatible install... /usr/bin/install -c
checking for sed... /bin/sed
checking for which... /usr/bin/which
checking for /usr/bin/pager... /usr/bin/pager
checking for gtar... no
checking for gnutar... no
checking for tar... /bin/tar
checking for tex... /usr/bin/tex
checking for pdftex... /usr/bin/pdftex
checking for pdflatex... /usr/bin/pdflatex
checking for makeindex... /usr/bin/makeindex
checking for texi2any... /usr/bin/texi2any
checking whether texi2any version is at least 5.1... yes
checking for ginstall-info... no
checking for install-info... no
checking for texi2dvi... /usr/bin/texi2dvi
checking for kpsewhich... /usr/bin/kpsewhich
checking for latex inconsolata package... found zi4.sty
checking for unzip... /usr/bin/unzip
checking for zip... /usr/bin/zip
checking for gzip... /bin/gzip
checking for bzip2... /bin/bzip2
using default browser ... xdg-open
checking for acroread... no
checking for acroread4... no
checking for xdg-open... /usr/bin/xdg-open
checking for notangle... false
checking for realpath... /usr/bin/realpath
checking for pkg-config... /usr/bin/pkg-config
checking for gcc... gcc -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -std=gnu99 -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking whether gcc -std=gnu99 needs -traditional... no
checking how to run the C preprocessor... gcc -std=gnu99 -E
defining F77 to be gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking how to run the C++ preprocessor... g++ -E
checking whether __attribute__((visibility())) is supported... yes
checking whether gcc -std=gnu99 accepts -fvisibility... yes
checking whether gfortran accepts -fvisibility... yes
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking minix/config.h usability... no
checking minix/config.h presence... no
checking for minix/config.h... no
checking whether it is safe to define __EXTENSIONS__... yes
checking for gcc... gcc
checking whether we are using the GNU Objective C compiler... no
checking whether gcc accepts -g... no
checking for Objective C++ compiler... trying some possibilities
checking whether g++ can compile ObjC++... no
checking whether  can compile ObjC++... no
no working ObjC++ compiler found
checking for a sed that does not truncate output... (cached) /bin/sed
checking for fgrep... /bin/grep -F
checking for ld used by gcc -std=gnu99... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc -std=gnu99 object... ok
checking for dlfcn.h... yes
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether g++ accepts -g... (cached) yes
checking how to run the C++ preprocessor... g++ -E
checking whether we are using the GNU Fortran 77 compiler... (cached) yes
checking whether gfortran accepts -g... (cached) yes
checking for objdir... .libs
checking if gcc -std=gnu99 supports -fno-rtti -fno-exceptions... no
checking for gcc -std=gnu99 option to produce PIC... -fPIC -DPIC
checking if gcc -std=gnu99 PIC flag -fPIC -DPIC works... yes
checking if gcc -std=gnu99 static flag -static works... yes
checking if gcc -std=gnu99 supports -c -o file.o... yes
checking if gcc -std=gnu99 supports -c -o file.o... (cached) yes
checking whether the gcc -std=gnu99 linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for cos in -lm... yes
checking for sin in -lm... yes
checking for dlopen in -ldl... yes
checking readline/history.h usability... yes
checking readline/history.h presence... yes
checking for readline/history.h... yes
checking readline/readline.h usability... yes
checking readline/readline.h presence... yes
checking for readline/readline.h... yes
checking for rl_callback_read_char in -lreadline... yes
checking for history_truncate_file... yes
checking whether rl_completion_matches exists and is declared... yes
checking for ANSI C header files... (cached) yes
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for sys/wait.h that is POSIX.1 compatible... yes
checking arpa/inet.h usability... yes
checking arpa/inet.h presence... yes
checking for arpa/inet.h... yes
checking dl.h usability... no
checking dl.h presence... no
checking for dl.h... no
checking for dlfcn.h... (cached) yes
checking elf.h usability... yes
checking elf.h presence... yes
checking for elf.h... yes
checking features.h usability... yes
checking features.h presence... yes
checking for features.h... yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking floatingpoint.h usability... no
checking floatingpoint.h presence... no
checking for floatingpoint.h... no
checking fpu_control.h usability... yes
checking fpu_control.h presence... yes
checking for fpu_control.h... yes
checking glob.h usability... yes
checking glob.h presence... yes
checking for glob.h... yes
checking grp.h usability... yes
checking grp.h presence... yes
checking for grp.h... yes
checking langinfo.h usability... yes
checking langinfo.h presence... yes
checking for langinfo.h... yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking netinet/in.h usability... yes
checking netinet/in.h presence... yes
checking for netinet/in.h... yes
checking pwd.h usability... yes
checking pwd.h presence... yes
checking for pwd.h... yes
checking sched.h usability... yes
checking sched.h presence... yes
checking for sched.h... yes
checking for strings.h... (cached) yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking sys/resource.h usability... yes
checking sys/resource.h presence... yes
checking for sys/resource.h... yes
checking sys/select.h usability... yes
checking sys/select.h presence... yes
checking for sys/select.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking for sys/stat.h... (cached) yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking sys/times.h usability... yes
checking sys/times.h presence... yes
checking for sys/times.h... yes
checking sys/utsname.h usability... yes
checking sys/utsname.h presence... yes
checking for sys/utsname.h... yes
checking for unistd.h... (cached) yes
checking utime.h usability... yes
checking utime.h presence... yes
checking for utime.h... yes
checking stdalign.h usability... yes
checking stdalign.h presence... yes
checking for stdalign.h... yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking for inttypes.h... (cached) yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking locale.h usability... yes
checking locale.h presence... yes
checking for locale.h... yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking stdbool.h usability... yes
checking stdbool.h presence... yes
checking for stdbool.h... yes
checking for stdint.h... (cached) yes
checking for string.h... (cached) yes
checking whether setjmp.h is POSIX.1 compatible... yes
checking whether sigsetjmp is declared... yes
checking whether siglongjmp is declared... yes
checking for GNU C library with version >= 2... yes
checking return type of signal handlers... void
checking for uint64_t... yes
checking for int64_t... yes
checking for int_fast64_t... yes
checking for pid_t... yes
checking for size_t... yes
checking whether SIZE_MAX is declared... yes
checking for blkcnt_t... yes
checking for type of socket length... socklen_t *
checking for stack_t... yes
checking for intptr_t... yes
checking for uintptr_t... yes
checking whether byte ordering is bigendian... no
checking for an ANSI C-conforming const... yes
checking for gcc -std=gnu99 option to accept ISO C99... none needed
checking for gcc -std=gnu99 option to accept ISO Standard C... (cached) none needed
checking for inline... inline
checking size of int... 4
checking size of long... 8
checking size of long long... 8
checking size of double... 8
checking size of size_t... 8
checking size of long double... 16
checking whether we can compute C Make dependencies... yes, using $(CC) -MM
checking whether gcc -std=gnu99 supports -c -o FILE.lo... yes
checking for gcc -std=gnu99 option to support OpenMP... -fopenmp
checking how to get verbose linking output from gfortran... -v
checking for Fortran 77 libraries of gfortran...  -L/usr/lib/gcc/aarch64-linux-gnu/5 -L/usr/lib/gcc/aarch64-linux-gnu/5/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/5/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/5/../../.. -lgfortran -lm
checking how to get verbose linking output from gcc -std=gnu99... -v
checking for C libraries of gcc -std=gnu99...  -L/usr/lib/gcc/aarch64-linux-gnu/5 -L/usr/lib/gcc/aarch64-linux-gnu/5/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/5/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/5/../../.. -lgcc_s
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore
checking whether gfortran appends underscores to external names... yes
checking whether gfortran appends extra underscores to external names... no
checking whether mixed C/Fortran code can be run... yes
checking whether gfortran and gcc -std=gnu99 agree on int and double... yes
checking whether gfortran and gcc -std=gnu99 agree on double complex... yes
checking for gfortran option to support OpenMP... -fopenmp
checking whether g++ accepts -M for generating dependencies... yes
checking for g++ option to support OpenMP... -fopenmp
checking whether we can compute ObjC Make dependencies... no
checking for xmkmf... no
checking whether g++  supports C++11 features by default... no
checking whether g++  supports C++11 features with -std=c++11... yes
checking for off_t... yes
checking for working alloca.h... yes
checking for alloca... yes
checking whether alloca is declared... yes
checking whether expm1 exists and is declared... yes
checking whether hypot exists and is declared... yes
checking whether log1p exists and is declared... yes
checking whether log1pl exists and is declared... yes
checking whether log2 exists and is declared... yes
checking whether log10 exists and is declared... yes
checking whether nearbyint exists and is declared... yes
checking whether nearbyintl exists and is declared... yes
checking whether powl exists and is declared... yes
checking whether rint exists and is declared... yes
checking whether rintl exists and is declared... yes
checking whether va_copy exists and is declared... yes
checking for isblank... yes
checking sunmath.h usability... no
checking sunmath.h presence... no
checking for sunmath.h... no
checking for cospi in -lsunmath... no
checking for atanpi... no
checking for atan2pi... no
checking for cospi... no
checking for exp10... yes
checking for pown... no
checking for sinpi... no
checking for tanpi... no
checking for fseeko... yes
checking for ftello... yes
checking for matherr... yes
checking whether fcntl exists and is declared... yes
checking whether getgrgid exists and is declared... yes
checking whether getpwuid exists and is declared... yes
checking whether kill exists and is declared... yes
checking whether sigaction exists and is declared... yes
checking whether sigaltstack exists and is declared... yes
checking whether sigemptyset exists and is declared... yes
checking whether fdopen exists and is declared... yes
checking whether popen exists and is declared... yes
checking whether setenv exists and is declared... yes
checking whether unsetenv exists and is declared... yes
checking whether getrlimit exists and is declared... yes
checking whether getrusage exists and is declared... yes
checking whether getpriority exists and is declared... yes
checking whether chmod exists and is declared... yes
checking whether mkfifo exists and is declared... yes
checking whether stat exists and is declared... yes
checking whether umask exists and is declared... yes
checking whether gettimeofday exists and is declared... yes
checking whether utimes exists and is declared... yes
checking whether times exists and is declared... yes
checking whether gmtime_r exists and is declared... yes
checking whether localtime_r exists and is declared... yes
checking whether nl_langinfo exists and is declared... yes
checking whether access exists and is declared... yes
checking whether chdir exists and is declared... yes
checking whether execv exists and is declared... yes
checking whether ftruncate exists and is declared... yes
checking whether getcwd exists and is declared... yes
checking whether geteuid exists and is declared... yes
checking whether getuid exists and is declared... yes
checking whether link exists and is declared... yes
checking whether readlink exists and is declared... yes
checking whether symlink exists and is declared... yes
checking whether sysconf exists and is declared... yes
checking whether sched_setaffinity exists and is declared... yes
checking whether sched_getaffinity exists and is declared... yes
checking whether utime exists and is declared... yes
checking for clock_gettime in -lrt... yes
checking whether clock_gettime exists and is declared... yes
checking whether timespec_get exists and is declared... yes
checking for putenv... yes
checking whether putenv is declared... yes
checking for vasprintf... yes
checking whether vasprintf is declared... yes
checking for mempcpy... yes
checking for realpath... yes
checking whether realpath is declared... yes
checking whether glob exists and is declared... yes
checking for isnan... yes
checking whether isfinite is declared... yes
checking whether isnan is declared... yes
checking whether you have IEEE 754 floating-point arithmetic... yes
checking whether putenv("FOO") can unset an environment variable... yes
checking whether putenv("FOO=") can unset an environment variable... no
checking for nl_langinfo and CODESET... yes
checking for mkdtemp... yes
checking for strdup... yes
checking for strncasecmp... yes
checking whether mkdtemp is declared... yes
checking whether strdup is declared... yes
checking whether strncasecmp is declared... yes
checking for library containing connect... none required
checking for library containing gethostbyname... none required
checking for library containing xdr_string... none required
checking for __setfpucw... no
checking for working calloc... yes
checking for working isfinite... yes
checking for working log1p... yes
checking whether ftell works correctly on files opened for append... yes
checking for working sigaction... yes
checking whether mktime sets errno... no
checking whether mktime works correctly outside 1902-2037... yes
checking complex.h usability... yes
checking complex.h presence... yes
checking for complex.h... yes
checking for double complex... yes
checking whether C99 double complex is supported... yes
checking whether cabs exists and is declared... yes
checking whether carg exists and is declared... yes
checking whether cexp exists and is declared... yes
checking whether clog exists and is declared... yes
checking whether csqrt exists and is declared... yes
checking whether cpow exists and is declared... yes
checking whether ccos exists and is declared... yes
checking whether csin exists and is declared... yes
checking whether ctan exists and is declared... yes
checking whether cacos exists and is declared... yes
checking whether casin exists and is declared... yes
checking whether catan exists and is declared... yes
checking whether ccosh exists and is declared... yes
checking whether csinh exists and is declared... yes
checking whether ctanh exists and is declared... yes
checking whether 'struct tm' includes tm_zone... yes
checking whether 'struct tm' includes tm_gmtoff... yes
checking for dgemm_... no
checking for ATL_xerbla in -latlas... no
checking for dgemm_ in -lblas... yes
checking for dgemm_ in -ldgemm... no
checking for dgemm_ in -lblas... (cached) yes
checking for dgemm_ in -lessl... no
checking for dgemm_ in -lblas... (cached) yes
checking whether double complex BLAS can be used... yes
checking whether the BLAS is complete... yes
checking for dpstrf_... no
checking for dpstrf_ in -llapack... yes
checking iconv.h usability... yes
checking iconv.h presence... yes
checking for iconv.h... yes
checking for iconv... yes
checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes
checking for iconvlist... no
checking for iconv... yes
checking for iconv declaration... 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking wchar.h usability... yes
checking wchar.h presence... yes
checking for wchar.h... yes
checking wctype.h usability... yes
checking wctype.h presence... yes
checking for wctype.h... yes
checking whether mbrtowc exists and is declared... yes
checking whether wcrtomb exists and is declared... yes
checking whether wcscoll exists and is declared... yes
checking whether wcsftime exists and is declared... yes
checking whether wcstod exists and is declared... yes
checking whether mbstowcs exists and is declared... yes
checking whether wcstombs exists and is declared... yes
checking whether wctrans exists and is declared... yes
checking whether iswblank exists and is declared... yes
checking whether wctype exists and is declared... yes
checking whether iswctype exists and is declared... yes
checking for wctrans_t... yes
checking for mbstate_t... yes
checking for ICU... no
checking for X... libraries , headers 
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
checking X11/Intrinsic.h usability... yes
checking X11/Intrinsic.h presence... yes
checking for X11/Intrinsic.h... yes
checking for XtToolkitInitialize in -lXt... yes
using X11 ... yes
checking for KeySym... yes
checking X11/Xmu/Atoms.h usability... no
checking X11/Xmu/Atoms.h presence... no
checking for X11/Xmu/Atoms.h... no
checking whether pkg-config knows about cairo and pango... yes
checking whether cairo including pango is >= 1.2 and works... yes
checking for tclConfig.sh... no
checking for tclConfig.sh in library (sub)directories... /usr/lib/tcl8.6/tclConfig.sh
checking for tkConfig.sh... no
checking for tkConfig.sh in library (sub)directories... /usr/lib/tk8.6/tkConfig.sh
checking tcl.h usability... yes
checking tcl.h presence... yes
checking for tcl.h... yes
checking tk.h usability... yes
checking tk.h presence... yes
checking for tk.h... yes
checking whether compiling/linking Tcl/Tk code works... yes
checking for BSD networking... yes
checking if jpeglib version >= 6b... yes
checking for jpeg_destroy_compress in -ljpeg... yes
checking for main in -lz... yes
checking if libpng version >= 1.2.7... yes
checking for png_create_write_struct in -lpng... yes
checking tiffio.h usability... yes
checking tiffio.h presence... yes
checking for tiffio.h... yes
checking for TIFFOpen in -ltiff... yes
checking rpc/types.h usability... yes
checking rpc/types.h presence... yes
checking for rpc/types.h... yes
checking for rpc/xdr.h... yes
checking for XDR support... yes
checking for inflateInit2_ in -lz... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking if zlib version >= 1.2.5... yes
checking whether zlib support needs to be compiled... no
checking for BZ2_bzlibVersion in -lbz2... yes
checking bzlib.h usability... yes
checking bzlib.h presence... yes
checking for bzlib.h... yes
checking if bzip2 version >= 1.0.6... yes
checking whether bzip2 support needs to be compiled... no
checking for lzma_version_number in -llzma... yes
checking lzma.h usability... yes
checking lzma.h presence... yes
checking for lzma.h... yes
checking if lzma version >= 5.0.3... yes
checking for pcre_fullinfo in -lpcre... yes
checking pcre.h usability... yes
checking pcre.h presence... yes
checking for pcre.h... yes
checking pcre/pcre.h usability... no
checking pcre/pcre.h presence... no
checking for pcre/pcre.h... no
checking if PCRE version >= 8.10, < 10.0 and has UTF-8 support... yes
checking whether PCRE support needs to be compiled... no
checking for curl-config... /usr/bin/curl-config
libcurl 7.43.0
checking if libcurl version >= 7.28.0... yes
checking curl/curl.h usability... yes
checking curl/curl.h presence... yes
checking for curl/curl.h... yes
checking whether leap seconds are treated according to POSIX... yes
checking for inline... inline
checking for sys/time.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... (cached) yes
checking for struct stat.st_atim.tv_nsec... yes
checking whether struct stat.st_atim is of type struct timespec... yes
checking for setitimer... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for _LARGEFILE_SOURCE value needed for large files... no
checking whether KERN_USRSTACK sysctl is supported... no
checking for visible __lib_stack_end... yes
checking for paperconf... /usr/bin/paperconf
checking whether we are using the GNU Fortran compiler... yes
checking whether gfortran accepts -g... yes
checking whether we are using the GNU Fortran compiler... (cached) yes
checking whether gfortran accepts -g... (cached) yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for Fortran flag to compile .f90 files... none
checking for Fortran flag to compile .f95 files... none
checking for gfortran option to support OpenMP... -fopenmp
checking whether NLS is requested... yes

Configuring src/extra/intl directory
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking whether we are using the GNU C Library 2 or newer... yes
checking for ranlib... (cached) ranlib
checking for simple visibility declarations... yes
checking for stdint.h... yes
checking for getpagesize... yes
checking for working mmap... yes
checking whether integer division by zero raises SIGFPE... no
checking for inttypes.h... yes
checking for unsigned long long int... yes
checking for inttypes.h... (cached) yes
checking whether the inttypes.h PRIxNN macros are broken... no
checking whether imported symbols can be declared weak... yes
checking for multithread API to use... none
checking argz.h usability... yes
checking argz.h presence... yes
checking for argz.h... yes
checking for inttypes.h... (cached) yes
checking for limits.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... (cached) yes
checking for getcwd... yes
checking for getegid... yes
checking for geteuid... yes
checking for getgid... yes
checking for getuid... yes
checking for mempcpy... (cached) yes
checking for munmap... yes
checking for stpcpy... yes
checking for strcasecmp... yes
checking for strdup... (cached) yes
checking for strtoul... yes
checking for tsearch... yes
checking for argz_count... yes
checking for argz_stringify... yes
checking for argz_next... yes
checking for __fsetlocking... yes
checking whether feof_unlocked is declared... yes
checking whether fgets_unlocked is declared... yes
checking for iconv... (cached) yes
checking for iconv declaration... (cached) 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking for NL_LOCALE_NAME macro... yes
checking for bison... bison
checking version of bison... 3.0.2, ok
checking for long long int... yes
checking for long double... yes
checking for wchar_t... yes
checking for wint_t... yes
checking for intmax_t... yes
checking whether printf() supports POSIX/XSI format strings... yes
checking whether we are using the GNU C Library 2.1 or newer... yes
checking for stdint.h... (cached) yes
checking for SIZE_MAX... yes
checking for stdint.h... (cached) yes
checking for CFPreferencesCopyAppValue... no
checking for CFLocaleCopyCurrent... no
checking for ptrdiff_t... yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for asprintf... yes
checking for fwprintf... yes
checking for putenv... (cached) yes
checking for setenv... yes
checking for setlocale... yes
checking for snprintf... yes
checking for wcslen... yes
checking whether _snprintf is declared... no
checking whether _snwprintf is declared... no
checking whether getc_unlocked is declared... yes
checking for nl_langinfo and CODESET... (cached) yes
checking for LC_MESSAGES... yes
checking for shared library run path origin... done
checking for CFPreferencesCopyAppValue... (cached) no
checking for CFLocaleCopyCurrent... (cached) no
checking whether included gettext is requested... no
checking for GNU gettext in libc... yes
checking whether to use NLS... yes
checking where the gettext function comes from... libc
Finished configuring src/extra/intl directory

using as R_SHELL for scripts ... /bin/bash
configure: creating ./config.status
config.status: creating Makeconf
config.status: creating Makefile
config.status: creating doc/Makefile
config.status: creating doc/html/Makefile
config.status: creating doc/manual/Makefile
config.status: creating etc/Makefile
config.status: creating etc/Makeconf
config.status: creating etc/Renviron
config.status: creating etc/javaconf
config.status: creating etc/ldpaths
config.status: creating m4/Makefile
config.status: creating po/Makefile
config.status: creating share/Makefile
config.status: creating src/Makefile
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config.status: creating src/extra/Makefile
config.status: creating src/extra/blas/Makefile
config.status: creating src/extra/bzip2/Makefile
config.status: creating src/extra/intl/Makefile
config.status: creating src/extra/pcre/Makefile
config.status: creating src/extra/tre/Makefile
config.status: creating src/extra/tzone/Makefile
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config.status: creating src/extra/zlib/Makefile
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config.status: creating src/include/R_ext/Makefile
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config.status: creating src/library/Makefile
config.status: creating src/library/base/DESCRIPTION
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config.status: creating src/library/compiler/DESCRIPTION
config.status: creating src/library/compiler/Makefile
config.status: creating src/library/datasets/DESCRIPTION
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config.status: creating src/library/parallel/src/Makefile
config.status: creating src/library/profile/Makefile
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config.status: creating src/library/stats/src/Makefile
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config.status: creating src/library/splines/src/Makefile
config.status: creating src/library/tcltk/DESCRIPTION
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config.status: creating src/library/tcltk/src/Makefile
config.status: creating src/library/tools/DESCRIPTION
config.status: creating src/library/tools/Makefile
config.status: creating src/library/tools/src/Makefile
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config.status: creating src/include/config.h
config.status: executing libtool commands
config.status: executing stamp-h commands

R is now configured for aarch64-unknown-linux-gnu

  Source directory:          .
  Installation directory:    /usr

  C compiler:                gcc -std=gnu99  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g
  Fortran 77 compiler:       gfortran  -g -O2 -fstack-protector-strong

  C++ compiler:              g++  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g
  C++ 11 compiler:           g++  -std=c++11 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g
  Fortran 90/95 compiler:    gfortran -g -O2 -fstack-protector-strong
  Obj-C compiler:	      

  Interfaces supported:      X11, tcltk
  External libraries:        readline, BLAS(generic), LAPACK(generic), zlib, bzlib, lzma, PCRE, curl
  Additional capabilities:   PNG, JPEG, TIFF, NLS, cairo
  Options enabled:           shared R library, R profiling, memory profiling

  Capabilities skipped:      ICU
  Options not enabled:       shared BLAS

  Recommended packages:      no

touch configure-stamp
*** make-arch ***
/usr/bin/make		CFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g"			\
		CXXFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g"			\
		FFLAGS="-g -O2 -fstack-protector-strong"			\
		FCFLAGS="-g -O2 -fstack-protector-strong"			\
		CC="gcc -std=gnu99"				\
		CXX=g++			\
		F77=gfortran			\
		LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro"			\
		PKG_BUILT_STAMP=""""	\
		R
make[1]: Entering directory '/«PKGBUILDDIR»'
make[2]: Entering directory '/«PKGBUILDDIR»/m4'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/«PKGBUILDDIR»/m4'
make[2]: Entering directory '/«PKGBUILDDIR»/tools'
make[2]: Nothing to be done for 'R'.
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make[2]: Entering directory '/«PKGBUILDDIR»/doc'
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make[3]: Entering directory '/«PKGBUILDDIR»/doc/manual'
make[3]: Nothing to be done for 'R'.
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make[2]: Leaving directory '/«PKGBUILDDIR»/doc'
make[2]: Entering directory '/«PKGBUILDDIR»/etc'
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make[2]: Entering directory '/«PKGBUILDDIR»/share'
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make[2]: Entering directory '/«PKGBUILDDIR»/src'
make[3]: Entering directory '/«PKGBUILDDIR»/src/scripts'
creating src/scripts/R.fe
make[4]: Entering directory '/«PKGBUILDDIR»/src/scripts'
mkdir -p -- ../../bin
make[4]: Leaving directory '/«PKGBUILDDIR»/src/scripts'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/scripts'
make[3]: Entering directory '/«PKGBUILDDIR»/src/include'
mkdir -p -- ../../include
make[4]: Entering directory '/«PKGBUILDDIR»/src/include/R_ext'
mkdir -p -- ../../../include/R_ext
make[4]: Leaving directory '/«PKGBUILDDIR»/src/include/R_ext'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/include'
make[3]: Entering directory '/«PKGBUILDDIR»/src/extra'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/tre'
make[5]: Entering directory '/«PKGBUILDDIR»/src/extra/tre'
making regcomp.d from regcomp.c
making regerror.d from regerror.c
making regexec.d from regexec.c
making tre-ast.d from tre-ast.c
making tre-compile.d from tre-compile.c
making tre-match-approx.d from tre-match-approx.c
making tre-match-backtrack.d from tre-match-backtrack.c
making tre-match-parallel.d from tre-match-parallel.c
making tre-mem.d from tre-mem.c
making tre-parse.d from tre-parse.c
making tre-stack.d from tre-stack.c
making xmalloc.d from xmalloc.c
make[5]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre'
make[5]: Entering directory '/«PKGBUILDDIR»/src/extra/tre'
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c regcomp.c -o regcomp.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c regerror.c -o regerror.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c regexec.c -o regexec.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-ast.c -o tre-ast.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-compile.c -o tre-compile.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-match-approx.c -o tre-match-approx.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-match-backtrack.c -o tre-match-backtrack.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-match-parallel.c -o tre-match-parallel.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-mem.c -o tre-mem.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-parse.c -o tre-parse.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-stack.c -o tre-stack.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c xmalloc.c -o xmalloc.o
rm -f libtre.a
ar cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o xmalloc.o
ranlib libtre.a
make[5]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/extra'
make[3]: Entering directory '/«PKGBUILDDIR»/src/appl'
making integrate.d from integrate.c
making interv.d from interv.c
making maxcol.d from maxcol.c
making optim.d from optim.c
making pretty.d from pretty.c
making uncmin.d from uncmin.c
make[4]: Entering directory '/«PKGBUILDDIR»/src/appl'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c integrate.c -o integrate.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c interv.c -o interv.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c maxcol.c -o maxcol.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c optim.c -o optim.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pretty.c -o pretty.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c uncmin.c -o uncmin.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dchdc.f -o dchdc.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dpbfa.f -o dpbfa.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dpbsl.f -o dpbsl.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dpoco.f -o dpoco.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dpodi.f -o dpodi.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dpofa.f -o dpofa.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dposl.f -o dposl.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dqrdc.f -o dqrdc.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dqrdc2.f -o dqrdc2.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dqrls.f -o dqrls.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dqrsl.f -o dqrsl.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dqrutl.f -o dqrutl.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dsvdc.f -o dsvdc.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dtrco.f -o dtrco.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dtrsl.f -o dtrsl.o
rm -f libappl.a
ar cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o 
ranlib libappl.a
make[4]: Leaving directory '/«PKGBUILDDIR»/src/appl'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/appl'
make[3]: Entering directory '/«PKGBUILDDIR»/src/nmath'
making mlutils.d from mlutils.c
making d1mach.d from d1mach.c
making i1mach.d from i1mach.c
making fmax2.d from fmax2.c
making fmin2.d from fmin2.c
making fprec.d from fprec.c
making fround.d from fround.c
making ftrunc.d from ftrunc.c
making sign.d from sign.c
making fsign.d from fsign.c
making imax2.d from imax2.c
making imin2.d from imin2.c
making chebyshev.d from chebyshev.c
making log1p.d from log1p.c
making expm1.d from expm1.c
making lgammacor.d from lgammacor.c
making gammalims.d from gammalims.c
making stirlerr.d from stirlerr.c
making bd0.d from bd0.c
making gamma.d from gamma.c
making lgamma.d from lgamma.c
making gamma_cody.d from gamma_cody.c
making beta.d from beta.c
making lbeta.d from lbeta.c
making polygamma.d from polygamma.c
making cospi.d from cospi.c
making bessel_i.d from bessel_i.c
making bessel_j.d from bessel_j.c
making bessel_k.d from bessel_k.c
making bessel_y.d from bessel_y.c
making choose.d from choose.c
making snorm.d from snorm.c
making sexp.d from sexp.c
making dgamma.d from dgamma.c
making pgamma.d from pgamma.c
making qgamma.d from qgamma.c
making rgamma.d from rgamma.c
making dbeta.d from dbeta.c
making pbeta.d from pbeta.c
making qbeta.d from qbeta.c
making rbeta.d from rbeta.c
making dunif.d from dunif.c
making punif.d from punif.c
making qunif.d from qunif.c
making runif.d from runif.c
making dnorm.d from dnorm.c
making pnorm.d from pnorm.c
making qnorm.d from qnorm.c
making rnorm.d from rnorm.c
making dlnorm.d from dlnorm.c
making plnorm.d from plnorm.c
making qlnorm.d from qlnorm.c
making rlnorm.d from rlnorm.c
making df.d from df.c
making pf.d from pf.c
making qf.d from qf.c
making rf.d from rf.c
making dnf.d from dnf.c
making dt.d from dt.c
making pt.d from pt.c
making qt.d from qt.c
making rt.d from rt.c
making dnt.d from dnt.c
making dchisq.d from dchisq.c
making pchisq.d from pchisq.c
making qchisq.d from qchisq.c
making rchisq.d from rchisq.c
making rnchisq.d from rnchisq.c
making dbinom.d from dbinom.c
making pbinom.d from pbinom.c
making qbinom.d from qbinom.c
making rbinom.d from rbinom.c
making rmultinom.d from rmultinom.c
making dcauchy.d from dcauchy.c
making pcauchy.d from pcauchy.c
making qcauchy.d from qcauchy.c
making rcauchy.d from rcauchy.c
making dexp.d from dexp.c
making pexp.d from pexp.c
making qexp.d from qexp.c
making rexp.d from rexp.c
making dgeom.d from dgeom.c
making pgeom.d from pgeom.c
making qgeom.d from qgeom.c
making rgeom.d from rgeom.c
making dhyper.d from dhyper.c
making phyper.d from phyper.c
making qhyper.d from qhyper.c
making rhyper.d from rhyper.c
making dnbinom.d from dnbinom.c
making pnbinom.d from pnbinom.c
making qnbinom.d from qnbinom.c
making rnbinom.d from rnbinom.c
making dpois.d from dpois.c
making ppois.d from ppois.c
making qpois.d from qpois.c
making rpois.d from rpois.c
making dweibull.d from dweibull.c
making pweibull.d from pweibull.c
making qweibull.d from qweibull.c
making rweibull.d from rweibull.c
making dlogis.d from dlogis.c
making plogis.d from plogis.c
making qlogis.d from qlogis.c
making rlogis.d from rlogis.c
making dnchisq.d from dnchisq.c
making pnchisq.d from pnchisq.c
making qnchisq.d from qnchisq.c
making dnbeta.d from dnbeta.c
making pnbeta.d from pnbeta.c
making qnbeta.d from qnbeta.c
making pnf.d from pnf.c
making pnt.d from pnt.c
making qnf.d from qnf.c
making qnt.d from qnt.c
making ptukey.d from ptukey.c
making qtukey.d from qtukey.c
making toms708.d from toms708.c
making wilcox.d from wilcox.c
making signrank.d from signrank.c
make[4]: Entering directory '/«PKGBUILDDIR»/src/nmath'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c mlutils.c -o mlutils.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c d1mach.c -o d1mach.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c i1mach.c -o i1mach.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fmax2.c -o fmax2.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fmin2.c -o fmin2.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fprec.c -o fprec.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fround.c -o fround.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ftrunc.c -o ftrunc.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sign.c -o sign.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fsign.c -o fsign.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c imax2.c -o imax2.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c imin2.c -o imin2.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c chebyshev.c -o chebyshev.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c log1p.c -o log1p.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c expm1.c -o expm1.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c lgammacor.c -o lgammacor.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gammalims.c -o gammalims.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stirlerr.c -o stirlerr.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bd0.c -o bd0.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gamma.c -o gamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c lgamma.c -o lgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gamma_cody.c -o gamma_cody.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c beta.c -o beta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c lbeta.c -o lbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c polygamma.c -o polygamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cospi.c -o cospi.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bessel_i.c -o bessel_i.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bessel_j.c -o bessel_j.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bessel_k.c -o bessel_k.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bessel_y.c -o bessel_y.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c choose.c -o choose.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c snorm.c -o snorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sexp.c -o sexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dgamma.c -o dgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pgamma.c -o pgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qgamma.c -o qgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rgamma.c -o rgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dbeta.c -o dbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pbeta.c -o pbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qbeta.c -o qbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rbeta.c -o rbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dunif.c -o dunif.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c punif.c -o punif.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qunif.c -o qunif.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c runif.c -o runif.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dnorm.c -o dnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pnorm.c -o pnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qnorm.c -o qnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rnorm.c -o rnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dlnorm.c -o dlnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plnorm.c -o plnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qlnorm.c -o qlnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rlnorm.c -o rlnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c df.c -o df.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pf.c -o pf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qf.c -o qf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rf.c -o rf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dnf.c -o dnf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dt.c -o dt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pt.c -o pt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qt.c -o qt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rt.c -o rt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dnt.c -o dnt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dchisq.c -o dchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pchisq.c -o pchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qchisq.c -o qchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rchisq.c -o rchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rnchisq.c -o rnchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dbinom.c -o dbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pbinom.c -o pbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qbinom.c -o qbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rbinom.c -o rbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rmultinom.c -o rmultinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dcauchy.c -o dcauchy.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pcauchy.c -o pcauchy.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qcauchy.c -o qcauchy.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rcauchy.c -o rcauchy.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dexp.c -o dexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pexp.c -o pexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qexp.c -o qexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rexp.c -o rexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dgeom.c -o dgeom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pgeom.c -o pgeom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qgeom.c -o qgeom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rgeom.c -o rgeom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dhyper.c -o dhyper.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c phyper.c -o phyper.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qhyper.c -o qhyper.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rhyper.c -o rhyper.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dnbinom.c -o dnbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pnbinom.c -o pnbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qnbinom.c -o qnbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rnbinom.c -o rnbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dpois.c -o dpois.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ppois.c -o ppois.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qpois.c -o qpois.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rpois.c -o rpois.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dweibull.c -o dweibull.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pweibull.c -o pweibull.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qweibull.c -o qweibull.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rweibull.c -o rweibull.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dlogis.c -o dlogis.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plogis.c -o plogis.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qlogis.c -o qlogis.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rlogis.c -o rlogis.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dnchisq.c -o dnchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pnchisq.c -o pnchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qnchisq.c -o qnchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dnbeta.c -o dnbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pnbeta.c -o pnbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qnbeta.c -o qnbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pnf.c -o pnf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pnt.c -o pnt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qnf.c -o qnf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qnt.c -o qnt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ptukey.c -o ptukey.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qtukey.c -o qtukey.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c toms708.c -o toms708.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c wilcox.c -o wilcox.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c signrank.c -o signrank.o
rm -rf libnmath.a
ar cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o
ranlib libnmath.a
make[4]: Leaving directory '/«PKGBUILDDIR»/src/nmath'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/nmath'
make[3]: Entering directory '/«PKGBUILDDIR»/src/unix'
config.status: creating src/unix/Makefile
making Rembedded.d from Rembedded.c
making dynload.d from dynload.c
making system.d from system.c
making sys-unix.d from sys-unix.c
making sys-std.d from sys-std.c
making X11.d from X11.c
make[4]: Entering directory '/«PKGBUILDDIR»/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Rembedded.c -o Rembedded.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dynload.c -o dynload.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c system.c -o system.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sys-unix.c -o sys-unix.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sys-std.c -o sys-std.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c X11.c -o X11.o
rm -rf libunix.a
ar cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o
ranlib libunix.a
make[4]: Leaving directory '/«PKGBUILDDIR»/src/unix'
make[4]: Entering directory '/«PKGBUILDDIR»/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -Wl,-Bsymbolic-functions -Wl,-z,relro -DR_HOME='"/«PKGBUILDDIR»"' \
  -o Rscript ./Rscript.c
make[4]: Leaving directory '/«PKGBUILDDIR»/src/unix'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/unix'
make[3]: Entering directory '/«PKGBUILDDIR»/src/main'
config.status: creating src/main/Makefile
making CommandLineArgs.d from CommandLineArgs.c
making Rdynload.d from Rdynload.c
making Renviron.d from Renviron.c
making RNG.d from RNG.c
making agrep.d from agrep.c
making apply.d from apply.c
making arithmetic.d from arithmetic.c
making array.d from array.c
making attrib.d from attrib.c
making bind.d from bind.c
making builtin.d from builtin.c
making character.d from character.c
making coerce.d from coerce.c
making colors.d from colors.c
making complex.d from complex.c
making connections.d from connections.c
making context.d from context.c
making cum.d from cum.c
making dcf.d from dcf.c
making datetime.d from datetime.c
making debug.d from debug.c
making deparse.d from deparse.c
making devices.d from devices.c
making dotcode.d from dotcode.c
making dounzip.d from dounzip.c
making dstruct.d from dstruct.c
making duplicate.d from duplicate.c
making edit.d from edit.c
making engine.d from engine.c
making envir.d from envir.c
making errors.d from errors.c
making eval.d from eval.c
making format.d from format.c
making gevents.d from gevents.c
making gram.d from gram.c
making gram-ex.d from gram-ex.c
making graphics.d from graphics.c
making grep.d from grep.c
making identical.d from identical.c
making inlined.d from inlined.c
making inspect.d from inspect.c
making internet.d from internet.c
making iosupport.d from iosupport.c
making lapack.d from lapack.c
making list.d from list.c
making localecharset.d from localecharset.c
making logic.d from logic.c
making main.d from main.c
making mapply.d from mapply.c
making match.d from match.c
making memory.d from memory.c
making names.d from names.c
making objects.d from objects.c
making options.d from options.c
making paste.d from paste.c
making platform.d from platform.c
making plot.d from plot.c
making plot3d.d from plot3d.c
making plotmath.d from plotmath.c
making print.d from print.c
making printarray.d from printarray.c
making printvector.d from printvector.c
making printutils.d from printutils.c
making qsort.d from qsort.c
making random.d from random.c
making raw.d from raw.c
making registration.d from registration.c
making relop.d from relop.c
making rlocale.d from rlocale.c
making saveload.d from saveload.c
making scan.d from scan.c
making seq.d from seq.c
making serialize.d from serialize.c
making sort.d from sort.c
making source.d from source.c
making split.d from split.c
making sprintf.d from sprintf.c
making startup.d from startup.c
making subassign.d from subassign.c
making subscript.d from subscript.c
making subset.d from subset.c
making summary.d from summary.c
making sysutils.d from sysutils.c
making times.d from times.c
making unique.d from unique.c
making util.d from util.c
making version.d from version.c
making g_alab_her.d from g_alab_her.c
making g_cntrlify.d from g_cntrlify.c
making g_fontdb.d from g_fontdb.c
making g_her_glyph.d from g_her_glyph.c
making Rmain.d from Rmain.c
making alloca.d from alloca.c
making mkdtemp.d from mkdtemp.c
making strdup.d from strdup.c
making strncasecmp.d from strncasecmp.c
make[4]: Entering directory '/«PKGBUILDDIR»/src/main'
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CommandLineArgs.c -o CommandLineArgs.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Rdynload.c -o Rdynload.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Renviron.c -o Renviron.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c RNG.c -o RNG.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c agrep.c -o agrep.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c apply.c -o apply.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c arithmetic.c -o arithmetic.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c array.c -o array.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c attrib.c -o attrib.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bind.c -o bind.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c builtin.c -o builtin.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c character.c -o character.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c coerce.c -o coerce.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c colors.c -o colors.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c complex.c -o complex.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c connections.c -o connections.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c context.c -o context.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cum.c -o cum.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dcf.c -o dcf.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c datetime.c -o datetime.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c debug.c -o debug.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c deparse.c -o deparse.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c devices.c -o devices.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dotcode.c -o dotcode.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dounzip.c -o dounzip.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dstruct.c -o dstruct.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c duplicate.c -o duplicate.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c edit.c -o edit.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c engine.c -o engine.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c envir.c -o envir.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c errors.c -o errors.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c eval.c -o eval.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c format.c -o format.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gevents.c -o gevents.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gram.c -o gram.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gram-ex.c -o gram-ex.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c graphics.c -o graphics.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c grep.c -o grep.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c identical.c -o identical.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c inlined.c -o inlined.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c inspect.c -o inspect.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c internet.c -o internet.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c iosupport.c -o iosupport.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c lapack.c -o lapack.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c list.c -o list.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c localecharset.c -o localecharset.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c logic.c -o logic.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c main.c -o main.o
main.c: In function 'dummy_ii':
main.c:1598:12: warning: function returns address of local variable [-Wreturn-local-addr]
     return (uintptr_t) &ii;
            ^
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c mapply.c -o mapply.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c match.c -o match.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c memory.c -o memory.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c names.c -o names.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c objects.c -o objects.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c options.c -o options.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c paste.c -o paste.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c platform.c -o platform.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plot.c -o plot.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plot3d.c -o plot3d.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plotmath.c -o plotmath.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c print.c -o print.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c printarray.c -o printarray.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c printvector.c -o printvector.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c printutils.c -o printutils.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qsort.c -o qsort.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c random.c -o random.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c raw.c -o raw.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c registration.c -o registration.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c relop.c -o relop.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rlocale.c -o rlocale.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c saveload.c -o saveload.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c scan.c -o scan.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c seq.c -o seq.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c serialize.c -o serialize.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sort.c -o sort.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c source.c -o source.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c split.c -o split.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sprintf.c -o sprintf.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c startup.c -o startup.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c subassign.c -o subassign.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c subscript.c -o subscript.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c subset.c -o subset.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c summary.c -o summary.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sysutils.c -o sysutils.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c times.c -o times.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c unique.c -o unique.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c util.c -o util.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c version.c -o version.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c g_alab_her.c -o g_alab_her.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c g_cntrlify.c -o g_cntrlify.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c g_fontdb.c -o g_fontdb.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c g_her_glyph.c -o g_her_glyph.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c xxxpr.f -o xxxpr.o
gcc -std=gnu99 -shared -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro  -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o names.o objects.o options.o paste.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o   `ls ../unix/*.o ../appl/*.o ../nmath/*.o`    ../extra/tre/libtre.a     -lblas -lgfortran -lm   -lreadline  -lpcre -llzma -lbz2 -lz -lrt -ldl -lm  
make[5]: Entering directory '/«PKGBUILDDIR»/src/main'
mkdir -p -- /«PKGBUILDDIR»/bin/exec
mkdir -p -- /«PKGBUILDDIR»/lib
make[5]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[4]: Entering directory '/«PKGBUILDDIR»/src/main'
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Rmain.c -o Rmain.o
gcc -std=gnu99 -Wl,--export-dynamic -fopenmp  -L../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o R.bin Rmain.o  -lR 
make[5]: Entering directory '/«PKGBUILDDIR»/src/main'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[3]: Entering directory '/«PKGBUILDDIR»/src/modules'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/internet'
making Rhttpd.d from Rhttpd.c
making Rsock.d from Rsock.c
making internet.d from internet.c
making libcurl.d from libcurl.c
making nanoftp.d from nanoftp.c
making nanohttp.d from nanohttp.c
making sock.d from sock.c
making sockconn.d from sockconn.c
make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/internet'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -fvisibility=hidden -c Rhttpd.c -o Rhttpd.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -fvisibility=hidden -c Rsock.c -o Rsock.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -fvisibility=hidden -c internet.c -o internet.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -fvisibility=hidden -c libcurl.c -o libcurl.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -fvisibility=hidden -c nanoftp.c -o nanoftp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -fvisibility=hidden -c nanohttp.c -o nanohttp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -fvisibility=hidden -c sock.c -o sock.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -fvisibility=hidden -c sockconn.c -o sockconn.o
gcc -std=gnu99 -shared -L../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o internet.so Rhttpd.o Rsock.o internet.o libcurl.o nanoftp.o nanohttp.o sock.o sockconn.o -L/usr/lib/aarch64-linux-gnu -lcurl -lR  
make[6]: Entering directory '/«PKGBUILDDIR»/src/modules/internet'
mkdir -p -- /«PKGBUILDDIR»/modules
make[6]: Leaving directory '/«PKGBUILDDIR»/src/modules/internet'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/internet'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/internet'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/lapack'
making Lapack.d from Lapack.c
make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/lapack'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Lapack.c -o Lapack.o
gcc -std=gnu99 -shared -L../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o lapack.so  Lapack.o  -lR  -llapack -lblas -lgfortran -lm
make[6]: Entering directory '/«PKGBUILDDIR»/src/modules/lapack'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/modules/lapack'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/lapack'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/lapack'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/X11'
making devX11.d from devX11.c
making rotated.d from rotated.c
making rbitmap.d from rbitmap.c
make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/X11'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c devX11.c -o devX11.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rotated.c -o rotated.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rbitmap.c -o rbitmap.o
gcc -std=gnu99 -shared -L../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o R_X11.so devX11.o rotated.o rbitmap.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng12 -lz -lcairo -lX11 -lXext  -lX11 -lXt  -ltiff -ljpeg -lpng -lz -lR -lm 
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dataentry.c -o dataentry.o
gcc -std=gnu99 -shared -L../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o R_de.so dataentry.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng12 -lz -lcairo -lX11 -lXext  -lX11 -lXt  -lR -lm 
make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11'
make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/X11'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/modules'
make[3]: Entering directory '/«PKGBUILDDIR»/src/library'
mkdir -p -- ../../library
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/profile'
building system startup profile
mkdir -p -- ../../../library/base/R
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/profile'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/translations'
building package 'translations'
mkdir -p -- ../../../library/translations
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/translations'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/translations'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/translations'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/base'
building package 'base'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/base'
mkdir -p -- ../../../library/base/demo
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
building package 'tools'
mkdir -p -- ../../../library/tools
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
mkdir -p -- ../../../library/tools/R
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/tools/src'
making text.d from text.c
making init.d from init.c
making Rmd5.d from Rmd5.c
making md5.d from md5.c
making signals.d from signals.c
making install.d from install.c
making getfmts.d from getfmts.c
making http.d from http.c
making gramLatex.d from gramLatex.c
making gramRd.d from gramRd.c
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c text.c -o text.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Rmd5.c -o Rmd5.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c md5.c -o md5.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c signals.c -o signals.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c install.c -o install.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c getfmts.c -o getfmts.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c http.c -o http.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gramLatex.c -o gramLatex.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gramRd.c -o gramRd.o
gcc -std=gnu99 -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o -L../../../../lib -lR
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/tools/src'
mkdir -p -- ../../../../library/tools/libs
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/tools/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/tools/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
installing 'sysdata.rda'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/compiler'
building package 'compiler'
mkdir -p -- ../../../library/compiler
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/compiler'
mkdir -p -- ../../../library/compiler/R
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/compiler'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/compiler'
byte-compiling package 'compiler'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/compiler'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/compiler'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/base'
byte-compiling package 'base'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
byte-compiling package 'tools'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/utils'
building package 'utils'
mkdir -p -- ../../../library/utils
mkdir -p -- ../../../library/utils/doc
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/utils'
mkdir -p -- ../../../library/utils/R
mkdir -p -- ../../../library/utils/Sweave
mkdir -p -- ../../../library/utils/misc
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/utils'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/utils'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/utils/src'
making init.d from init.c
making io.d from io.c
making size.d from size.c
making sock.d from sock.c
making stubs.d from stubs.c
making utils.d from utils.c
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c io.c -o io.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c size.c -o size.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sock.c -o sock.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stubs.c -o stubs.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o
gcc -std=gnu99 -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o utils.so init.o io.o size.o sock.o stubs.o utils.o -L../../../../lib -lR
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/utils/src'
mkdir -p -- ../../../../library/utils/libs
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/utils/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/utils/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/utils'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/utils'
byte-compiling package 'utils'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/utils'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/utils'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices'
building package 'grDevices'
mkdir -p -- ../../../library/grDevices
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices'
mkdir -p -- ../../../library/grDevices/R
mkdir -p -- ../../../library/grDevices/afm
mkdir -p -- ../../../library/grDevices/enc
mkdir -p -- ../../../library/grDevices/icc
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src'
making axis_scales.d from axis_scales.c
making chull.d from chull.c
making devices.d from devices.c
making init.d from init.c
making stubs.d from stubs.c
making colors.d from colors.c
making devCairo.d from devCairo.c
making devPicTeX.d from devPicTeX.c
making devPS.d from devPS.c
making devQuartz.d from devQuartz.c
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c axis_scales.c -o axis_scales.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c chull.c -o chull.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c devices.c -o devices.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stubs.c -o stubs.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c colors.c -o colors.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c devCairo.c -o devCairo.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c devPicTeX.c -o devPicTeX.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c devPS.c -o devPS.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c devQuartz.c -o devQuartz.o
gcc -std=gnu99 -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o devCairo.o devPicTeX.o devPS.o devQuartz.o -lz -L../../../../lib -lR
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src'
mkdir -p -- ../../../../library/grDevices/libs
make[8]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
making cairoBM.d from cairoBM.c
make[9]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[10]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
gcc -std=gnu99 -I. -I../../../../../src/include -I../../../../../src/include -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../../../src/modules/X11  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cairoBM.c -o cairoBM.o
gcc -std=gnu99 -shared -L../../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng12 -lz -lcairo  -ltiff -ljpeg -lpng -lz -L../../../../../lib -lR -lm 
make[10]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[9]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[8]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices'
byte-compiling package 'grDevices'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/graphics'
building package 'graphics'
mkdir -p -- ../../../library/graphics
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/graphics'
mkdir -p -- ../../../library/graphics/R
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/graphics'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/graphics/src'
making init.d from init.c
making base.d from base.c
making graphics.d from graphics.c
making par.d from par.c
making plot.d from plot.c
making plot3d.d from plot3d.c
making stem.d from stem.c
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c base.c -o base.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c graphics.c -o graphics.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c par.c -o par.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plot.c -o plot.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plot3d.c -o plot3d.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stem.c -o stem.o
gcc -std=gnu99 -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/graphics/src'
mkdir -p -- ../../../../library/graphics/libs
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/graphics'
byte-compiling package 'graphics'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/stats'
building package 'stats'
mkdir -p -- ../../../library/stats
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats'
mkdir -p -- ../../../library/stats/R
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/stats/src'
making init.d from init.c
making kmeans.d from kmeans.c
making ansari.d from ansari.c
making bandwidths.d from bandwidths.c
making chisqsim.d from chisqsim.c
making d2x2xk.d from d2x2xk.c
making fexact.d from fexact.c
making kendall.d from kendall.c
making ks.d from ks.c
making line.d from line.c
making smooth.d from smooth.c
making prho.d from prho.c
making swilk.d from swilk.c
making ksmooth.d from ksmooth.c
making loessc.d from loessc.c
making monoSpl.d from monoSpl.c
making isoreg.d from isoreg.c
making Srunmed.d from Srunmed.c
making dblcen.d from dblcen.c
making distance.d from distance.c
making hclust-utils.d from hclust-utils.c
making nls.d from nls.c
making rWishart.d from rWishart.c
making HoltWinters.d from HoltWinters.c
making PPsum.d from PPsum.c
making arima.d from arima.c
making burg.d from burg.c
making filter.d from filter.c
making mAR.d from mAR.c
making pacf.d from pacf.c
making starma.d from starma.c
making port.d from port.c
making family.d from family.c
making sbart.d from sbart.c
making approx.d from approx.c
making loglin.d from loglin.c
making lowess.d from lowess.c
making massdist.d from massdist.c
making splines.d from splines.c
making lm.d from lm.c
making complete_cases.d from complete_cases.c
making cov.d from cov.c
making deriv.d from deriv.c
making fft.d from fft.c
making fourier.d from fourier.c
making model.d from model.c
making optim.d from optim.c
making optimize.d from optimize.c
making integrate.d from integrate.c
making random.d from random.c
making distn.d from distn.c
making zeroin.d from zeroin.c
making rcont.d from rcont.c
making influence.d from influence.c
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c kmeans.c -o kmeans.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ansari.c -o ansari.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bandwidths.c -o bandwidths.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c chisqsim.c -o chisqsim.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c d2x2xk.c -o d2x2xk.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fexact.c -o fexact.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c kendall.c -o kendall.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ks.c -o ks.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c line.c -o line.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c smooth.c -o smooth.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c prho.c -o prho.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c swilk.c -o swilk.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ksmooth.c -o ksmooth.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c loessc.c -o loessc.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c monoSpl.c -o monoSpl.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c isoreg.c -o isoreg.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Srunmed.c -o Srunmed.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dblcen.c -o dblcen.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c distance.c -o distance.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c hclust-utils.c -o hclust-utils.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c nls.c -o nls.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rWishart.c -o rWishart.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c HoltWinters.c -o HoltWinters.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c PPsum.c -o PPsum.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c arima.c -o arima.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c burg.c -o burg.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c filter.c -o filter.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c mAR.c -o mAR.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pacf.c -o pacf.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c starma.c -o starma.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c port.c -o port.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c family.c -o family.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sbart.c -o sbart.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c approx.c -o approx.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c loglin.c -o loglin.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c lowess.c -o lowess.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c massdist.c -o massdist.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c splines.c -o splines.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c lm.c -o lm.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c complete_cases.c -o complete_cases.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cov.c -o cov.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c deriv.c -o deriv.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fft.c -o fft.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fourier.c -o fourier.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c model.c -o model.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c optim.c -o optim.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c optimize.c -o optimize.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c integrate.c -o integrate.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c random.c -o random.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c distn.c -o distn.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c zeroin.c -o zeroin.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rcont.c -o rcont.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c influence.c -o influence.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c bsplvd.f -o bsplvd.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c bvalue.f -o bvalue.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c bvalus.f -o bvalus.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c loessf.f -o loessf.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c ppr.f -o ppr.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c qsbart.f -o qsbart.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c sgram.f -o sgram.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c sinerp.f -o sinerp.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c sslvrg.f -o sslvrg.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c stxwx.f -o stxwx.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c hclust.f -o hclust.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c kmns.f -o kmns.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c eureka.f -o eureka.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c stl.f -o stl.o
gfortran -fpic  -g -O2 -fstack-protector-strong -ffloat-store -c portsrc.f -o portsrc.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c lminfl.f -o lminfl.o
gcc -std=gnu99 -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -llapack -lblas -lgfortran -lm -L../../../../lib -lR
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/stats/src'
mkdir -p -- ../../../../library/stats/libs
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/stats/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/stats/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats'
byte-compiling package 'stats'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/stats'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/datasets'
building package 'datasets'
mkdir -p -- ../../../library/datasets
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/datasets'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/datasets'
mkdir -p -- ../../../library/datasets/data
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/datasets'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
building package 'methods'
mkdir -p -- ../../../library/methods
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
mkdir -p -- ../../../library/methods/R
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/methods/src'
making do_substitute_direct.d from do_substitute_direct.c
making init.d from init.c
making methods_list_dispatch.d from methods_list_dispatch.c
making slot.d from slot.c
making class_support.d from class_support.c
making tests.d from tests.c
making utils.d from utils.c
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c do_substitute_direct.c -o do_substitute_direct.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c methods_list_dispatch.c -o methods_list_dispatch.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c slot.c -o slot.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c class_support.c -o class_support.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c tests.c -o tests.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o
gcc -std=gnu99 -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/methods/src'
mkdir -p -- ../../../../library/methods/libs
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/methods/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/methods/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
byte-compiling 'methods'
initializing class and method definitions ... done
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
building package 'grid'
mkdir -p -- ../../../library/grid
mkdir -p -- ../../../library/grid/doc
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
mkdir -p -- ../../../library/grid/R
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/grid/src'
making gpar.d from gpar.c
making grid.d from grid.c
making just.d from just.c
making layout.d from layout.c
making matrix.d from matrix.c
making register.d from register.c
making state.d from state.c
making unit.d from unit.c
making util.d from util.c
making viewport.d from viewport.c
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gpar.c -o gpar.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c grid.c -o grid.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c just.c -o just.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c layout.c -o layout.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c matrix.c -o matrix.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c register.c -o register.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c state.c -o state.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c unit.c -o unit.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c util.c -o util.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c viewport.c -o viewport.o
gcc -std=gnu99 -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o grid.so gpar.o grid.o just.o layout.o matrix.o register.o state.o unit.o util.o viewport.o -L../../../../lib -lR
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/grid/src'
mkdir -p -- ../../../../library/grid/libs
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/grid/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/grid/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
byte-compiling package 'grid'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
building package 'splines'
mkdir -p -- ../../../library/splines
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
mkdir -p -- ../../../library/splines/R
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/splines/src'
making splines.d from splines.c
gcc -std=gnu99 -I../../../../include -DNDEBUG      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c splines.c -o splines.o
gcc -std=gnu99 -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o splines.so splines.o -L../../../../lib -lR
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/splines/src'
mkdir -p -- ../../../../library/splines/libs
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/splines/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/splines/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
byte-compiling package 'splines'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/stats4'
building package 'stats4'
mkdir -p -- ../../../library/stats4
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats4'
mkdir -p -- ../../../library/stats4/R
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats4'
byte-compiling package 'stats4'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk'
building package 'tcltk'
mkdir -p -- ../../../library/tcltk/R
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk'
mkdir -p -- ../../../library/tcltk/exec
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk/src'
making init.d from init.c
making tcltk.d from tcltk.c
making tcltk_unix.d from tcltk_unix.c
gcc -std=gnu99 -I../../../../include -DNDEBUG -I/usr/include/tcl8.6 -I/usr/include/tcl8.6 -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I/usr/include/tcl8.6 -I/usr/include/tcl8.6 -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c tcltk.c -o tcltk.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I/usr/include/tcl8.6 -I/usr/include/tcl8.6 -I../../../include -I../../../../src/include -DHAVE_CONFIG_H     -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c tcltk_unix.c -o tcltk_unix.o
gcc -std=gnu99 -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/lib/aarch64-linux-gnu -ltcl8.6 -L/usr/lib/aarch64-linux-gnu -ltk8.6 -lX11 -lXss -lXext -lm -L../../../../lib -lR
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk/src'
mkdir -p -- ../../../../library/tcltk/libs
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk/src'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk'
byte-compiling package 'tcltk'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
building package 'parallel'
mkdir -p -- ../../../library/parallel
mkdir -p -- ../../../library/parallel/doc
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
mkdir -p -- ../../../library/parallel/R
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/parallel/src'
making init.d from init.c
making rngstream.d from rngstream.c
making fork.d from fork.c
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rngstream.c -o rngstream.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fork.c -o fork.o
gcc -std=gnu99 -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/parallel/src'
mkdir -p -- ../../../../library/parallel/libs
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
byte-compiling package 'parallel'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
installing parsed NAMESPACE files
make[3]: Leaving directory '/«PKGBUILDDIR»/src/library'
make[2]: Leaving directory '/«PKGBUILDDIR»/src'
make[2]: Entering directory '/«PKGBUILDDIR»/tests'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/«PKGBUILDDIR»/tests'
you should 'make docs' now ...
make[1]: Leaving directory '/«PKGBUILDDIR»'
(cd src/nmath/standalone;				\
	/usr/bin/make	CFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT"		\
		CXXFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT"	\
		FFLAGS="-g -O2 -fstack-protector-strong -D_REENTRANT"	\
		CC="gcc -std=gnu99"				\
		CXX=g++			\
		F77=gfortran			\
		libRmath_la_LDFLAGS=-Wl,-soname,libRmath.so.1 \
		shared static )
make[1]: Entering directory '/«PKGBUILDDIR»/src/nmath/standalone'
(cd ../../include; /usr/bin/make Rmath.h)
make[2]: Entering directory '/«PKGBUILDDIR»/src/include'
make[2]: 'Rmath.h' is up to date.
make[2]: Leaving directory '/«PKGBUILDDIR»/src/include'
Copying source files
make[2]: Entering directory '/«PKGBUILDDIR»/src/nmath/standalone'
making mlutils.d from mlutils.c
making d1mach.d from d1mach.c
making i1mach.d from i1mach.c
making fmax2.d from fmax2.c
making fmin2.d from fmin2.c
making fprec.d from fprec.c
making fround.d from fround.c
making ftrunc.d from ftrunc.c
making sign.d from sign.c
making fsign.d from fsign.c
making imax2.d from imax2.c
making imin2.d from imin2.c
making chebyshev.d from chebyshev.c
making log1p.d from log1p.c
making expm1.d from expm1.c
making lgammacor.d from lgammacor.c
making gammalims.d from gammalims.c
making stirlerr.d from stirlerr.c
making bd0.d from bd0.c
making gamma.d from gamma.c
making lgamma.d from lgamma.c
making gamma_cody.d from gamma_cody.c
making beta.d from beta.c
making lbeta.d from lbeta.c
making polygamma.d from polygamma.c
making cospi.d from cospi.c
making bessel_i.d from bessel_i.c
making bessel_j.d from bessel_j.c
making bessel_k.d from bessel_k.c
making bessel_y.d from bessel_y.c
making choose.d from choose.c
making snorm.d from snorm.c
making sexp.d from sexp.c
making dgamma.d from dgamma.c
making pgamma.d from pgamma.c
making qgamma.d from qgamma.c
making rgamma.d from rgamma.c
making dbeta.d from dbeta.c
making pbeta.d from pbeta.c
making qbeta.d from qbeta.c
making rbeta.d from rbeta.c
making dunif.d from dunif.c
making punif.d from punif.c
making qunif.d from qunif.c
making runif.d from runif.c
making dnorm.d from dnorm.c
making pnorm.d from pnorm.c
making qnorm.d from qnorm.c
making rnorm.d from rnorm.c
making dlnorm.d from dlnorm.c
making plnorm.d from plnorm.c
making qlnorm.d from qlnorm.c
making rlnorm.d from rlnorm.c
making df.d from df.c
making pf.d from pf.c
making qf.d from qf.c
making rf.d from rf.c
making dnf.d from dnf.c
making dt.d from dt.c
making pt.d from pt.c
making qt.d from qt.c
making rt.d from rt.c
making dnt.d from dnt.c
making dchisq.d from dchisq.c
making pchisq.d from pchisq.c
making qchisq.d from qchisq.c
making rchisq.d from rchisq.c
making rnchisq.d from rnchisq.c
making dbinom.d from dbinom.c
making pbinom.d from pbinom.c
making qbinom.d from qbinom.c
making rbinom.d from rbinom.c
making rmultinom.d from rmultinom.c
making dcauchy.d from dcauchy.c
making pcauchy.d from pcauchy.c
making qcauchy.d from qcauchy.c
making rcauchy.d from rcauchy.c
making dexp.d from dexp.c
making pexp.d from pexp.c
making qexp.d from qexp.c
making rexp.d from rexp.c
making dgeom.d from dgeom.c
making pgeom.d from pgeom.c
making qgeom.d from qgeom.c
making rgeom.d from rgeom.c
making dhyper.d from dhyper.c
making phyper.d from phyper.c
making qhyper.d from qhyper.c
making rhyper.d from rhyper.c
making dnbinom.d from dnbinom.c
making pnbinom.d from pnbinom.c
making qnbinom.d from qnbinom.c
making rnbinom.d from rnbinom.c
making dpois.d from dpois.c
making ppois.d from ppois.c
making qpois.d from qpois.c
making rpois.d from rpois.c
making dweibull.d from dweibull.c
making pweibull.d from pweibull.c
making qweibull.d from qweibull.c
making rweibull.d from rweibull.c
making dlogis.d from dlogis.c
making plogis.d from plogis.c
making qlogis.d from qlogis.c
making rlogis.d from rlogis.c
making dnchisq.d from dnchisq.c
making pnchisq.d from pnchisq.c
making qnchisq.d from qnchisq.c
making dnbeta.d from dnbeta.c
making pnbeta.d from pnbeta.c
making qnbeta.d from qnbeta.c
making pnf.d from pnf.c
making pnt.d from pnt.c
making qnf.d from qnf.c
making qnt.d from qnt.c
making ptukey.d from ptukey.c
making qtukey.d from qtukey.c
making toms708.d from toms708.c
making wilcox.d from wilcox.c
making signrank.d from signrank.c
making std_unif.d from std_unif.c
make[2]: Leaving directory '/«PKGBUILDDIR»/src/nmath/standalone'
make[2]: Entering directory '/«PKGBUILDDIR»/src/nmath/standalone'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c mlutils.c -o mlutils.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c d1mach.c -o d1mach.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c i1mach.c -o i1mach.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fmax2.c -o fmax2.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fmin2.c -o fmin2.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fprec.c -o fprec.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fround.c -o fround.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ftrunc.c -o ftrunc.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c sign.c -o sign.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fsign.c -o fsign.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c imax2.c -o imax2.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c imin2.c -o imin2.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c chebyshev.c -o chebyshev.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c log1p.c -o log1p.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c expm1.c -o expm1.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lgammacor.c -o lgammacor.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gammalims.c -o gammalims.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c stirlerr.c -o stirlerr.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bd0.c -o bd0.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gamma.c -o gamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lgamma.c -o lgamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gamma_cody.c -o gamma_cody.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c beta.c -o beta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lbeta.c -o lbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c polygamma.c -o polygamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c cospi.c -o cospi.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_i.c -o bessel_i.lo
In file included from bessel_i.c:26:0:
bessel_i.c: In function 'bessel_i':
bessel_i.c:77:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_i.c:77:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
bessel_i.c:77:25: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_i.c:77:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
bessel_i.c: In function 'bessel_i_ex':
bessel_i.c:122:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_i.c:122:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
bessel_i.c:122:25: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_i.c:122:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_j.c -o bessel_j.lo
In file included from bessel_j.c:27:0:
bessel_j.c: In function 'bessel_j':
bessel_j.c:79:21: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_j.c:79:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
bessel_j.c:79:21: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_j.c:79:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
bessel_j.c: In function 'bessel_j_ex':
bessel_j.c:125:21: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_j.c:125:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
bessel_j.c:125:21: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_j.c:125:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_k.c -o bessel_k.lo
In file included from bessel_k.c:27:0:
bessel_k.c: In function 'bessel_k':
bessel_k.c:71:21: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_k.c:71:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
bessel_k.c:71:21: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_k.c:71:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
bessel_k.c: In function 'bessel_k_ex':
bessel_k.c:108:21: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_k.c:108:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
bessel_k.c:108:21: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_k.c:108:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_y.c -o bessel_y.lo
In file included from bessel_y.c:26:0:
bessel_y.c: In function 'bessel_y':
bessel_y.c:86:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_y.c:86:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
bessel_y.c:86:25: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_y.c:86:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
bessel_y.c: In function 'bessel_y_ex':
bessel_y.c:134:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_y.c:134:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
bessel_y.c:134:25: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_y.c:134:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c choose.c -o choose.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c snorm.c -o snorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c sexp.c -o sexp.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dgamma.c -o dgamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pgamma.c -o pgamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qgamma.c -o qgamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rgamma.c -o rgamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dbeta.c -o dbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pbeta.c -o pbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qbeta.c -o qbeta.lo
In file included from qbeta.c:33:0:
../../../src/include/R_ext/Arith.h:89:0: warning: "R_FINITE" redefined
 # define R_FINITE(x)    isfinite(x)
 ^
In file included from qbeta.c:31:0:
./../nmath.h:107:0: note: this is the location of the previous definition
 #define R_FINITE(x)    R_finite(x)
 ^
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rbeta.c -o rbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dunif.c -o dunif.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c punif.c -o punif.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qunif.c -o qunif.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c runif.c -o runif.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnorm.c -o dnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnorm.c -o pnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnorm.c -o qnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnorm.c -o rnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dlnorm.c -o dlnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c plnorm.c -o plnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qlnorm.c -o qlnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rlnorm.c -o rlnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c df.c -o df.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pf.c -o pf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qf.c -o qf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rf.c -o rf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnf.c -o dnf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dt.c -o dt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pt.c -o pt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qt.c -o qt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rt.c -o rt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnt.c -o dnt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dchisq.c -o dchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pchisq.c -o pchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qchisq.c -o qchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rchisq.c -o rchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnchisq.c -o rnchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dbinom.c -o dbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pbinom.c -o pbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qbinom.c -o qbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rbinom.c -o rbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rmultinom.c -o rmultinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dcauchy.c -o dcauchy.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pcauchy.c -o pcauchy.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qcauchy.c -o qcauchy.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rcauchy.c -o rcauchy.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dexp.c -o dexp.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pexp.c -o pexp.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qexp.c -o qexp.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rexp.c -o rexp.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dgeom.c -o dgeom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pgeom.c -o pgeom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qgeom.c -o qgeom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rgeom.c -o rgeom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dhyper.c -o dhyper.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c phyper.c -o phyper.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qhyper.c -o qhyper.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rhyper.c -o rhyper.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnbinom.c -o dnbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnbinom.c -o pnbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnbinom.c -o qnbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnbinom.c -o rnbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dpois.c -o dpois.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ppois.c -o ppois.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qpois.c -o qpois.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rpois.c -o rpois.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dweibull.c -o dweibull.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pweibull.c -o pweibull.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qweibull.c -o qweibull.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rweibull.c -o rweibull.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dlogis.c -o dlogis.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c plogis.c -o plogis.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qlogis.c -o qlogis.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rlogis.c -o rlogis.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnchisq.c -o dnchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnchisq.c -o pnchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnchisq.c -o qnchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnbeta.c -o dnbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnbeta.c -o pnbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnbeta.c -o qnbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnf.c -o pnf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnt.c -o pnt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnf.c -o qnf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnt.c -o qnt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ptukey.c -o ptukey.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qtukey.c -o qtukey.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c toms708.c -o toms708.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c wilcox.c -o wilcox.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c signrank.c -o signrank.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c std_unif.c -o std_unif.lo
gcc -std=gnu99 -shared -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -o libRmath.so -Wl,-soname,libRmath.so.1 mlutils.lo d1mach.lo i1mach.lo fmax2.lo fmin2.lo fprec.lo fround.lo ftrunc.lo sign.lo fsign.lo imax2.lo imin2.lo chebyshev.lo log1p.lo expm1.lo lgammacor.lo gammalims.lo stirlerr.lo bd0.lo gamma.lo lgamma.lo gamma_cody.lo beta.lo lbeta.lo polygamma.lo cospi.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_y.lo choose.lo snorm.lo sexp.lo dgamma.lo pgamma.lo qgamma.lo rgamma.lo dbeta.lo pbeta.lo qbeta.lo rbeta.lo dunif.lo punif.lo qunif.lo runif.lo dnorm.lo pnorm.lo qnorm.lo rnorm.lo dlnorm.lo plnorm.lo qlnorm.lo rlnorm.lo df.lo pf.lo qf.lo rf.lo dnf.lo dt.lo pt.lo qt.lo rt.lo dnt.lo dchisq.lo pchisq.lo qchisq.lo rchisq.lo rnchisq.lo dbinom.lo pbinom.lo qbinom.lo rbinom.lo rmultinom.lo dcauchy.lo pcauchy.lo qcauchy.lo rcauchy.lo dexp.lo pexp.lo qexp.lo rexp.lo dgeom.lo pgeom.lo qgeom.lo rgeom.lo dhyper.lo phyper.lo qhyper.lo rhyper.lo dnbinom.lo pnbinom.lo qnbinom.lo rnbinom.lo dpois.lo ppois.lo qpois.lo rpois.lo dweibull.lo pweibull.lo qweibull.lo rweibull.lo dlogis.lo plogis.lo qlogis.lo rlogis.lo dnchisq.lo pnchisq.lo qnchisq.lo dnbeta.lo pnbeta.lo qnbeta.lo pnf.lo pnt.lo qnf.lo qnt.lo ptukey.lo qtukey.lo toms708.lo wilcox.lo signrank.lo std_unif.lo -lm
make[2]: Leaving directory '/«PKGBUILDDIR»/src/nmath/standalone'
make[2]: Entering directory '/«PKGBUILDDIR»/src/nmath/standalone'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c mlutils.c -o mlutils.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c d1mach.c -o d1mach.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c i1mach.c -o i1mach.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fmax2.c -o fmax2.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fmin2.c -o fmin2.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fprec.c -o fprec.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fround.c -o fround.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ftrunc.c -o ftrunc.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c sign.c -o sign.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fsign.c -o fsign.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c imax2.c -o imax2.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c imin2.c -o imin2.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c chebyshev.c -o chebyshev.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c log1p.c -o log1p.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c expm1.c -o expm1.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lgammacor.c -o lgammacor.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gammalims.c -o gammalims.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c stirlerr.c -o stirlerr.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bd0.c -o bd0.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gamma.c -o gamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lgamma.c -o lgamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gamma_cody.c -o gamma_cody.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c beta.c -o beta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lbeta.c -o lbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c polygamma.c -o polygamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c cospi.c -o cospi.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_i.c -o bessel_i.o
In file included from bessel_i.c:26:0:
bessel_i.c: In function 'bessel_i':
bessel_i.c:77:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_i.c:77:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
bessel_i.c:77:25: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_i.c:77:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
bessel_i.c: In function 'bessel_i_ex':
bessel_i.c:122:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_i.c:122:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
bessel_i.c:122:25: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_i.c:122:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_j.c -o bessel_j.o
In file included from bessel_j.c:27:0:
bessel_j.c: In function 'bessel_j':
bessel_j.c:79:21: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_j.c:79:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
bessel_j.c:79:21: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_j.c:79:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
bessel_j.c: In function 'bessel_j_ex':
bessel_j.c:125:21: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_j.c:125:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
bessel_j.c:125:21: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_j.c:125:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_k.c -o bessel_k.o
In file included from bessel_k.c:27:0:
bessel_k.c: In function 'bessel_k':
bessel_k.c:71:21: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_k.c:71:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
bessel_k.c:71:21: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_k.c:71:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
bessel_k.c: In function 'bessel_k_ex':
bessel_k.c:108:21: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_k.c:108:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
bessel_k.c:108:21: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_k.c:108:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_y.c -o bessel_y.o
In file included from bessel_y.c:26:0:
bessel_y.c: In function 'bessel_y':
bessel_y.c:86:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_y.c:86:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
bessel_y.c:86:25: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_y.c:86:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
bessel_y.c: In function 'bessel_y_ex':
bessel_y.c:134:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_y.c:134:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
bessel_y.c:134:25: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_y.c:134:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c choose.c -o choose.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c snorm.c -o snorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c sexp.c -o sexp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dgamma.c -o dgamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pgamma.c -o pgamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qgamma.c -o qgamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rgamma.c -o rgamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dbeta.c -o dbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pbeta.c -o pbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qbeta.c -o qbeta.o
In file included from qbeta.c:33:0:
../../../src/include/R_ext/Arith.h:89:0: warning: "R_FINITE" redefined
 # define R_FINITE(x)    isfinite(x)
 ^
In file included from qbeta.c:31:0:
./../nmath.h:107:0: note: this is the location of the previous definition
 #define R_FINITE(x)    R_finite(x)
 ^
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rbeta.c -o rbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dunif.c -o dunif.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c punif.c -o punif.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qunif.c -o qunif.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c runif.c -o runif.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnorm.c -o dnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnorm.c -o pnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnorm.c -o qnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnorm.c -o rnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dlnorm.c -o dlnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c plnorm.c -o plnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qlnorm.c -o qlnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rlnorm.c -o rlnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c df.c -o df.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pf.c -o pf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qf.c -o qf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rf.c -o rf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnf.c -o dnf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dt.c -o dt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pt.c -o pt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qt.c -o qt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rt.c -o rt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnt.c -o dnt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dchisq.c -o dchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pchisq.c -o pchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qchisq.c -o qchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rchisq.c -o rchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnchisq.c -o rnchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dbinom.c -o dbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pbinom.c -o pbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qbinom.c -o qbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rbinom.c -o rbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rmultinom.c -o rmultinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dcauchy.c -o dcauchy.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pcauchy.c -o pcauchy.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qcauchy.c -o qcauchy.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rcauchy.c -o rcauchy.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dexp.c -o dexp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pexp.c -o pexp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qexp.c -o qexp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rexp.c -o rexp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dgeom.c -o dgeom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pgeom.c -o pgeom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qgeom.c -o qgeom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rgeom.c -o rgeom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dhyper.c -o dhyper.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c phyper.c -o phyper.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qhyper.c -o qhyper.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rhyper.c -o rhyper.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnbinom.c -o dnbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnbinom.c -o pnbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnbinom.c -o qnbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnbinom.c -o rnbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dpois.c -o dpois.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ppois.c -o ppois.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qpois.c -o qpois.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rpois.c -o rpois.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dweibull.c -o dweibull.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pweibull.c -o pweibull.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qweibull.c -o qweibull.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rweibull.c -o rweibull.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dlogis.c -o dlogis.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c plogis.c -o plogis.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qlogis.c -o qlogis.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rlogis.c -o rlogis.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnchisq.c -o dnchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnchisq.c -o pnchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnchisq.c -o qnchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnbeta.c -o dnbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnbeta.c -o pnbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnbeta.c -o qnbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnf.c -o pnf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnt.c -o pnt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnf.c -o qnf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnt.c -o qnt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ptukey.c -o ptukey.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qtukey.c -o qtukey.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c toms708.c -o toms708.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c wilcox.c -o wilcox.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c signrank.c -o signrank.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c std_unif.c -o std_unif.o
ar cr libRmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o std_unif.o
ranlib libRmath.a
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make[2]: Leaving directory '/«PKGBUILDDIR»/doc'
make[2]: Entering directory '/«PKGBUILDDIR»/etc'
make[2]: Leaving directory '/«PKGBUILDDIR»/etc'
make[2]: Entering directory '/«PKGBUILDDIR»/share'
make[2]: Leaving directory '/«PKGBUILDDIR»/share'
make[2]: Entering directory '/«PKGBUILDDIR»/src'
make[3]: Entering directory '/«PKGBUILDDIR»/src/scripts'
make[4]: Entering directory '/«PKGBUILDDIR»/src/scripts'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/scripts'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/scripts'
make[3]: Entering directory '/«PKGBUILDDIR»/src/include'
make[4]: Entering directory '/«PKGBUILDDIR»/src/include/R_ext'
make[4]: Nothing to be done for 'R'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/include/R_ext'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/include'
make[3]: Entering directory '/«PKGBUILDDIR»/src/extra'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/tre'
make[5]: Entering directory '/«PKGBUILDDIR»/src/extra/tre'
make[5]: 'Makedeps' is up to date.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre'
make[5]: Entering directory '/«PKGBUILDDIR»/src/extra/tre'
make[5]: 'libtre.a' is up to date.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/extra'
make[3]: Entering directory '/«PKGBUILDDIR»/src/appl'
make[4]: Entering directory '/«PKGBUILDDIR»/src/appl'
make[4]: 'libappl.a' is up to date.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/appl'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/appl'
make[3]: Entering directory '/«PKGBUILDDIR»/src/nmath'
make[4]: Entering directory '/«PKGBUILDDIR»/src/nmath'
make[4]: 'libnmath.a' is up to date.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/nmath'
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make[3]: Entering directory '/«PKGBUILDDIR»/src/unix'
make[4]: Entering directory '/«PKGBUILDDIR»/src/unix'
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make[4]: Leaving directory '/«PKGBUILDDIR»/src/unix'
make[4]: Entering directory '/«PKGBUILDDIR»/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -Wl,-Bsymbolic-functions -Wl,-z,relro -DR_HOME='"/«PKGBUILDDIR»"' \
  -o Rscript ./Rscript.c
make[4]: Leaving directory '/«PKGBUILDDIR»/src/unix'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/unix'
make[3]: Entering directory '/«PKGBUILDDIR»/src/main'
make[4]: Entering directory '/«PKGBUILDDIR»/src/main'
make[5]: Entering directory '/«PKGBUILDDIR»/src/main'
/«PKGBUILDDIR»/lib/libR.so is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/main'
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make[5]: Entering directory '/«PKGBUILDDIR»/src/main'
/«PKGBUILDDIR»/bin/exec/R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/main'
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make[3]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[3]: Entering directory '/«PKGBUILDDIR»/src/modules'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/internet'
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make[5]: 'internet.so' is up to date.
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make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/lapack'
make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/lapack'
make[5]: 'lapack.so' is up to date.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/lapack'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/lapack'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/X11'
make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/X11'
make[5]: 'R_X11.so' is up to date.
make[5]: 'R_de.so' is up to date.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11'
make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/X11'
/«PKGBUILDDIR»/modules/R_X11.so is unchanged
/«PKGBUILDDIR»/modules/R_de.so is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/modules'
make[3]: Entering directory '/«PKGBUILDDIR»/src/library'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/profile'
building system startup profile
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/profile'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/translations'
building package 'translations'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/translations'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/translations'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/translations'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/base'
building package 'base'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/base'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
building package 'tools'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/tools/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/tools/src'
../../../../library/tools/libs/tools.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/tools/src'
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make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
installing 'sysdata.rda'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/compiler'
building package 'compiler'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/compiler'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/compiler'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/compiler'
make[5]: Nothing to be done for 'mklazycomp'.
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make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/compiler'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/utils'
building package 'utils'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/utils'
all.R is unchanged
make[5]: Nothing to be done for 'iconvlist'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/utils'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/utils'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/utils/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/utils/src'
../../../../library/utils/libs/utils.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/utils/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/utils/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/utils'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/utils'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/utils'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/utils'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices'
building package 'grDevices'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src'
../../../../library/grDevices/libs/grDevices.so is unchanged
make[8]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[9]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[10]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[10]: 'cairo.so' is up to date.
make[10]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
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make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/graphics'
building package 'graphics'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/graphics'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/graphics'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/graphics/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/graphics/src'
../../../../library/graphics/libs/graphics.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/graphics'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/stats'
building package 'stats'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/stats/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/stats/src'
../../../../library/stats/libs/stats.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/stats/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/stats/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/stats'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/datasets'
building package 'datasets'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/datasets'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/datasets'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/datasets'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
building package 'methods'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/methods/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/methods/src'
../../../../library/methods/libs/methods.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/methods/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/methods/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
make[5]: Nothing to be done for 'RfilesLazy'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
building package 'grid'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/grid/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/grid/src'
../../../../library/grid/libs/grid.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/grid/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/grid/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
building package 'splines'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/splines/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/splines/src'
../../../../library/splines/libs/splines.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/splines/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/splines/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/stats4'
building package 'stats4'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats4'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats4'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk'
building package 'tcltk'
all.R is unchanged
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk/src'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk/src'
../../../../library/tcltk/libs/tcltk.so is unchanged
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk/src'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
building package 'parallel'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/parallel/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/parallel/src'
../../../../library/parallel/libs/parallel.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
installing parsed NAMESPACE files
make[3]: Leaving directory '/«PKGBUILDDIR»/src/library'
make[2]: Leaving directory '/«PKGBUILDDIR»/src'
make[2]: Entering directory '/«PKGBUILDDIR»/tests'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/«PKGBUILDDIR»/tests'
you should 'make docs' now ...
make[2]: Entering directory '/«PKGBUILDDIR»/doc'
creating NEWS
creating NEWS.pdf
make[3]: Entering directory '/«PKGBUILDDIR»/doc/manual'
creating doc/manual/R-FAQ.html
creating doc/manual/version.texi
creating doc/manual/R-admin.html
creating doc/manual/R-data.html
creating doc/manual/R-exts.html
creating doc/manual/R-intro.html
creating doc/manual/R-ints.html
creating doc/manual/R-lang.html
make[4]: Entering directory '/«PKGBUILDDIR»/doc/html'
make[4]: Leaving directory '/«PKGBUILDDIR»/doc/html'
make[3]: Leaving directory '/«PKGBUILDDIR»/doc/manual'
make[2]: Leaving directory '/«PKGBUILDDIR»/doc'
make[2]: Entering directory '/«PKGBUILDDIR»/src/library'
make[3]: Entering directory '/«PKGBUILDDIR»/src/library'
installing parsed Rd
make[4]: Entering directory '/«PKGBUILDDIR»/src/library'
  base
  stats
  utils
  methods
  graphics
  grDevices
  datasets
  grid
  tools
  tcltk
  splines
  stats4
  compiler
  parallel
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/library'
make[3]: Entering directory '/«PKGBUILDDIR»/src/library'
building/updating package metadata ...
make[3]: Leaving directory '/«PKGBUILDDIR»/src/library'
make[3]: Entering directory '/«PKGBUILDDIR»/src/library'
writing package indices
make[4]: Entering directory '/«PKGBUILDDIR»/src/library'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/library'
make[2]: Leaving directory '/«PKGBUILDDIR»/src/library'
make[1]: Leaving directory '/«PKGBUILDDIR»'
/usr/bin/make javaconf
make[1]: Entering directory '/«PKGBUILDDIR»'
make[2]: Entering directory '/«PKGBUILDDIR»/m4'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/«PKGBUILDDIR»/m4'
make[2]: Entering directory '/«PKGBUILDDIR»/tools'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/«PKGBUILDDIR»/tools'
make[2]: Entering directory '/«PKGBUILDDIR»/doc'
make[3]: Entering directory '/«PKGBUILDDIR»/doc/html'
make[3]: Leaving directory '/«PKGBUILDDIR»/doc/html'
make[3]: Entering directory '/«PKGBUILDDIR»/doc/manual'
make[3]: Nothing to be done for 'R'.
make[3]: Leaving directory '/«PKGBUILDDIR»/doc/manual'
make[2]: Leaving directory '/«PKGBUILDDIR»/doc'
make[2]: Entering directory '/«PKGBUILDDIR»/etc'
make[2]: Leaving directory '/«PKGBUILDDIR»/etc'
make[2]: Entering directory '/«PKGBUILDDIR»/share'
make[2]: Leaving directory '/«PKGBUILDDIR»/share'
make[2]: Entering directory '/«PKGBUILDDIR»/src'
make[3]: Entering directory '/«PKGBUILDDIR»/src/scripts'
make[4]: Entering directory '/«PKGBUILDDIR»/src/scripts'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/scripts'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/scripts'
make[3]: Entering directory '/«PKGBUILDDIR»/src/include'
make[4]: Entering directory '/«PKGBUILDDIR»/src/include/R_ext'
make[4]: Nothing to be done for 'R'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/include/R_ext'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/include'
make[3]: Entering directory '/«PKGBUILDDIR»/src/extra'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/tre'
make[5]: Entering directory '/«PKGBUILDDIR»/src/extra/tre'
make[5]: 'Makedeps' is up to date.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre'
make[5]: Entering directory '/«PKGBUILDDIR»/src/extra/tre'
make[5]: 'libtre.a' is up to date.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/extra'
make[3]: Entering directory '/«PKGBUILDDIR»/src/appl'
make[4]: Entering directory '/«PKGBUILDDIR»/src/appl'
make[4]: 'libappl.a' is up to date.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/appl'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/appl'
make[3]: Entering directory '/«PKGBUILDDIR»/src/nmath'
make[4]: Entering directory '/«PKGBUILDDIR»/src/nmath'
make[4]: 'libnmath.a' is up to date.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/nmath'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/nmath'
make[3]: Entering directory '/«PKGBUILDDIR»/src/unix'
make[4]: Entering directory '/«PKGBUILDDIR»/src/unix'
make[4]: 'libunix.a' is up to date.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/unix'
make[4]: Entering directory '/«PKGBUILDDIR»/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -Wl,-Bsymbolic-functions -Wl,-z,relro -DR_HOME='"/«PKGBUILDDIR»"' \
  -o Rscript ./Rscript.c
make[4]: Leaving directory '/«PKGBUILDDIR»/src/unix'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/unix'
make[3]: Entering directory '/«PKGBUILDDIR»/src/main'
make[4]: Entering directory '/«PKGBUILDDIR»/src/main'
make[5]: Entering directory '/«PKGBUILDDIR»/src/main'
/«PKGBUILDDIR»/lib/libR.so is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[4]: Entering directory '/«PKGBUILDDIR»/src/main'
make[5]: Entering directory '/«PKGBUILDDIR»/src/main'
/«PKGBUILDDIR»/bin/exec/R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[3]: Entering directory '/«PKGBUILDDIR»/src/modules'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/internet'
make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/internet'
make[5]: 'internet.so' is up to date.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/internet'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/internet'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/lapack'
make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/lapack'
make[5]: 'lapack.so' is up to date.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/lapack'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/lapack'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/X11'
make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/X11'
make[5]: 'R_X11.so' is up to date.
make[5]: 'R_de.so' is up to date.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11'
make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/X11'
/«PKGBUILDDIR»/modules/R_X11.so is unchanged
/«PKGBUILDDIR»/modules/R_de.so is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/modules'
make[3]: Entering directory '/«PKGBUILDDIR»/src/library'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/profile'
building system startup profile
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/profile'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/translations'
building package 'translations'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/translations'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/translations'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/translations'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/base'
building package 'base'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/base'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
building package 'tools'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/tools/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/tools/src'
../../../../library/tools/libs/tools.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/tools/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/tools/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
installing 'sysdata.rda'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/compiler'
building package 'compiler'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/compiler'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/compiler'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/compiler'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/compiler'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/compiler'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/utils'
building package 'utils'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/utils'
all.R is unchanged
make[5]: Nothing to be done for 'iconvlist'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/utils'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/utils'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/utils/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/utils/src'
../../../../library/utils/libs/utils.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/utils/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/utils/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/utils'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/utils'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/utils'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/utils'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices'
building package 'grDevices'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src'
../../../../library/grDevices/libs/grDevices.so is unchanged
make[8]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[9]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[10]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[10]: 'cairo.so' is up to date.
make[10]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[9]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[8]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/graphics'
building package 'graphics'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/graphics'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/graphics'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/graphics/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/graphics/src'
../../../../library/graphics/libs/graphics.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/graphics'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/stats'
building package 'stats'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/stats/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/stats/src'
../../../../library/stats/libs/stats.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/stats/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/stats/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/stats'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/datasets'
building package 'datasets'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/datasets'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/datasets'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/datasets'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
building package 'methods'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/methods/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/methods/src'
../../../../library/methods/libs/methods.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/methods/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/methods/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
make[5]: Nothing to be done for 'RfilesLazy'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
building package 'grid'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/grid/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/grid/src'
../../../../library/grid/libs/grid.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/grid/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/grid/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
building package 'splines'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/splines/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/splines/src'
../../../../library/splines/libs/splines.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/splines/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/splines/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/stats4'
building package 'stats4'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats4'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats4'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk'
building package 'tcltk'
all.R is unchanged
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk/src'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk/src'
../../../../library/tcltk/libs/tcltk.so is unchanged
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk/src'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
building package 'parallel'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/parallel/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/parallel/src'
../../../../library/parallel/libs/parallel.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
installing parsed NAMESPACE files
make[3]: Leaving directory '/«PKGBUILDDIR»/src/library'
make[2]: Leaving directory '/«PKGBUILDDIR»/src'
make[2]: Entering directory '/«PKGBUILDDIR»/tests'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/«PKGBUILDDIR»/tests'
make[2]: Entering directory '/«PKGBUILDDIR»'
configuring Java ...
Java interpreter : /usr/lib/jvm/default-java/jre/bin/java
Java version     : 1.7.0_79
Java home path   : /usr/lib/jvm/default-java
Java compiler    : /usr/lib/jvm/default-java/bin/javac
Java headers gen.: /usr/lib/jvm/default-java/bin/javah
Java archive tool: /usr/lib/jvm/default-java/bin/jar

trying to compile and link a JNI program 
detected JNI cpp flags    : -I$(JAVA_HOME)/include
detected JNI linker flags : -L$(JAVA_HOME)/jre/lib/aarch64/server -ljvm
make[3]: Entering directory '/tmp/Rjavareconf.ZKOFYS'
gcc -std=gnu99 -I/«PKGBUILDDIR»/include -DNDEBUG -I/usr/lib/jvm/default-java/include     -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -c conftest.c -o conftest.o
gcc -std=gnu99 -shared -L/«PKGBUILDDIR»/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o conftest.so conftest.o -L/usr/lib/jvm/default-java/jre/lib/aarch64/server -ljvm -L/«PKGBUILDDIR»/lib -lR
make[3]: Leaving directory '/tmp/Rjavareconf.ZKOFYS'


JAVA_HOME        : /usr/lib/jvm/default-java
Java library path: $(JAVA_HOME)/jre/lib/aarch64/server
JNI cpp flags    : -I$(JAVA_HOME)/include
JNI linker flags : -L$(JAVA_HOME)/jre/lib/aarch64/server -ljvm
Updating Java configuration in /«PKGBUILDDIR»
Done.

make[2]: Leaving directory '/«PKGBUILDDIR»'
make[1]: Leaving directory '/«PKGBUILDDIR»'
touch make-arch-stamp
*** check ***
xvfb-run make check-all
make[1]: Entering directory '/«PKGBUILDDIR»'
make[2]: Entering directory '/«PKGBUILDDIR»/tests'
make[3]: Entering directory '/«PKGBUILDDIR»/tests'
make[4]: Entering directory '/«PKGBUILDDIR»/tests/Examples'
Testing examples for package 'base'
Testing examples for package 'tools'
  comparing 'tools-Ex.Rout' to 'tools-Ex.Rout.save' ... OK
Testing examples for package 'utils'
Testing examples for package 'grDevices'
  comparing 'grDevices-Ex.Rout' to 'grDevices-Ex.Rout.save' ... OK
Testing examples for package 'graphics'
  comparing 'graphics-Ex.Rout' to 'graphics-Ex.Rout.save' ... OK
Testing examples for package 'stats'
  comparing 'stats-Ex.Rout' to 'stats-Ex.Rout.save' ... OK
Testing examples for package 'datasets'
  comparing 'datasets-Ex.Rout' to 'datasets-Ex.Rout.save' ... OK
Testing examples for package 'methods'
Testing examples for package 'grid'
  comparing 'grid-Ex.Rout' to 'grid-Ex.Rout.save' ... OK
Testing examples for package 'splines'
  comparing 'splines-Ex.Rout' to 'splines-Ex.Rout.save' ... OK
Testing examples for package 'stats4'
  comparing 'stats4-Ex.Rout' to 'stats4-Ex.Rout.save' ... OK
Testing examples for package 'tcltk'
Testing examples for package 'compiler'
Testing examples for package 'parallel'
make[4]: Leaving directory '/«PKGBUILDDIR»/tests/Examples'
make[3]: Leaving directory '/«PKGBUILDDIR»/tests'
make[3]: Entering directory '/«PKGBUILDDIR»/tests'
running strict specific tests
make[4]: Entering directory '/«PKGBUILDDIR»/tests'
running code in 'eval-etc.R' ... OK
  comparing 'eval-etc.Rout' to './eval-etc.Rout.save' ... OK
running code in 'simple-true.R' ... OK
  comparing 'simple-true.Rout' to './simple-true.Rout.save' ... OK
running code in 'arith-true.R' ... OK
  comparing 'arith-true.Rout' to './arith-true.Rout.save' ... OK
running code in 'arith.R' ... OK
  comparing 'arith.Rout' to './arith.Rout.save' ... OK
running code in 'lm-tests.R' ... OK
  comparing 'lm-tests.Rout' to './lm-tests.Rout.save' ... OK
running code in 'ok-errors.R' ... OK
  comparing 'ok-errors.Rout' to './ok-errors.Rout.save' ... OK
running code in 'method-dispatch.R' ... OK
  comparing 'method-dispatch.Rout' to './method-dispatch.Rout.save' ... OK
running code in 'array-subset.R' ... OK
  comparing 'array-subset.Rout' to './array-subset.Rout.save' ... OK
running code in 'any-all.R' ... OK
  comparing 'any-all.Rout' to './any-all.Rout.save' ... OK
running code in 'd-p-q-r-tests.R' ... OK
  comparing 'd-p-q-r-tests.Rout' to './d-p-q-r-tests.Rout.save' ... OK
make[4]: Leaving directory '/«PKGBUILDDIR»/tests'
running sloppy specific tests
make[4]: Entering directory '/«PKGBUILDDIR»/tests'
running code in 'complex.R' ... OK
  comparing 'complex.Rout' to './complex.Rout.save' ... OK
running code in 'print-tests.R' ... OK
  comparing 'print-tests.Rout' to './print-tests.Rout.save' ... OK
running code in 'lapack.R' ... OK
  comparing 'lapack.Rout' to './lapack.Rout.save' ... OK
running code in 'datasets.R' ... OK
  comparing 'datasets.Rout' to './datasets.Rout.save' ... OK
running code in 'datetime.R' ... OK
  comparing 'datetime.Rout' to './datetime.Rout.save' ... OK
running code in 'iec60559.R' ... OK
  comparing 'iec60559.Rout' to './iec60559.Rout.save' ... OK
make[4]: Leaving directory '/«PKGBUILDDIR»/tests'
make[3]: Leaving directory '/«PKGBUILDDIR»/tests'
make[3]: Entering directory '/«PKGBUILDDIR»/tests'
running regression tests ...
make[4]: Entering directory '/«PKGBUILDDIR»/tests'
running code in 'reg-tests-1a.R' ... OK
running code in 'reg-tests-1b.R' ... OK
running code in 'reg-tests-1c.R' ... OK
running code in 'reg-tests-2.R' ... OK
  comparing 'reg-tests-2.Rout' to './reg-tests-2.Rout.save' ... OK
running code in 'reg-examples1.R' ... OK
running code in 'reg-examples2.R' ... OK
running code in 'reg-packages.R' ...Makefile.common:93: recipe for target 'reg-packages.Rout' failed
make[4]: *** [reg-packages.Rout] Error 1
make[4]: Leaving directory '/«PKGBUILDDIR»/tests'
Makefile.common:260: recipe for target 'test-Reg' failed
make[3]: *** [test-Reg] Error 2
make[3]: Leaving directory '/«PKGBUILDDIR»/tests'
Makefile.common:159: recipe for target 'test-all-basics' failed
make[2]: *** [test-all-basics] Error 1
make[2]: Leaving directory '/«PKGBUILDDIR»/tests'
Makefile:238: recipe for target 'check-all' failed
make[1]: *** [check-all] Error 2
make[1]: Leaving directory '/«PKGBUILDDIR»'
make: [check-stamp] Error 2 (ignored)
debian/rules:360: recipe for target 'check-stamp' failed
touch check-stamp
 fakeroot debian/rules binary-arch
*** install-arch ***
dh_testdir
dh_testroot
dh_prep -a
dh_installdirs -A
/«PKGBUILDDIR»/debian/r-base-core
/usr/bin/make DESTDIR=/«PKGBUILDDIR»/debian/r-base-core install
make[1]: Entering directory '/«PKGBUILDDIR»'
make[2]: Entering directory '/«PKGBUILDDIR»/m4'
make[2]: Nothing to be done for 'install'.
make[2]: Leaving directory '/«PKGBUILDDIR»/m4'
make[2]: Entering directory '/«PKGBUILDDIR»/tools'
make[2]: Nothing to be done for 'install'.
make[2]: Leaving directory '/«PKGBUILDDIR»/tools'
make[2]: Entering directory '/«PKGBUILDDIR»/doc'
installing doc ...
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/doc
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/man/man1
make[3]: Entering directory '/«PKGBUILDDIR»/doc/html'
installing doc/html ...
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/doc/html
make[3]: Leaving directory '/«PKGBUILDDIR»/doc/html'
make[3]: Entering directory '/«PKGBUILDDIR»/doc/manual'
installing doc/manual ...
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/doc/manual
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/doc/manual/images
make[3]: Leaving directory '/«PKGBUILDDIR»/doc/manual'
make[2]: Leaving directory '/«PKGBUILDDIR»/doc'
make[2]: Entering directory '/«PKGBUILDDIR»/etc'
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/etc
installing etc ...
make[2]: Leaving directory '/«PKGBUILDDIR»/etc'
make[2]: Entering directory '/«PKGBUILDDIR»/share'
installing share ...
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/R
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/dictionaries
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/encodings
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/java
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/licenses
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/make
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/Rd
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/Rd/macros
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/sh
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/texmf
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/texmf/bibtex/bib
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/texmf/bibtex/bst
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/texmf/tex/latex
make[2]: Leaving directory '/«PKGBUILDDIR»/share'
make[2]: Entering directory '/«PKGBUILDDIR»/src'
make[3]: Entering directory '/«PKGBUILDDIR»/src/scripts'
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/bin
make[3]: Leaving directory '/«PKGBUILDDIR»/src/scripts'
make[3]: Entering directory '/«PKGBUILDDIR»/src/include'
make[4]: Entering directory '/«PKGBUILDDIR»/src/include/R_ext'
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/include/R_ext
make[4]: Leaving directory '/«PKGBUILDDIR»/src/include/R_ext'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/include'
make[3]: Entering directory '/«PKGBUILDDIR»/src/extra'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/blas'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/blas'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/bzip2'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/bzip2'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/pcre'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/pcre'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/tre'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/xdr'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/xdr'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/xz'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/xz'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/zlib'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/zlib'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/intl'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/intl'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/extra'
make[3]: Entering directory '/«PKGBUILDDIR»/src/appl'
make[3]: Nothing to be done for 'install'.
make[3]: Leaving directory '/«PKGBUILDDIR»/src/appl'
make[3]: Entering directory '/«PKGBUILDDIR»/src/nmath'
make[3]: Nothing to be done for 'install'.
make[3]: Leaving directory '/«PKGBUILDDIR»/src/nmath'
make[3]: Entering directory '/«PKGBUILDDIR»/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -Wl,-Bsymbolic-functions -Wl,-z,relro -DR_HOME='"/usr/lib/R"' \
  -o Rscript ./Rscript.c
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/lib/pkgconfig
make[3]: Leaving directory '/«PKGBUILDDIR»/src/unix'
make[3]: Entering directory '/«PKGBUILDDIR»/src/main'
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/bin/exec
make[4]: Entering directory '/«PKGBUILDDIR»/src/main'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[4]: Entering directory '/«PKGBUILDDIR»/src/main'
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/lib
make[4]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[3]: Entering directory '/«PKGBUILDDIR»/src/modules'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/internet'
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/modules
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/internet'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/lapack'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/lapack'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/X11'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/modules'
make[3]: Entering directory '/«PKGBUILDDIR»/src/library'
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/library
installing packages ...
  building HTML index ...
make[3]: Leaving directory '/«PKGBUILDDIR»/src/library'
make[2]: Leaving directory '/«PKGBUILDDIR»/src'
make[2]: Entering directory '/«PKGBUILDDIR»/tests'
make[2]: Nothing to be done for 'install'.
make[2]: Leaving directory '/«PKGBUILDDIR»/tests'
make[1]: Leaving directory '/«PKGBUILDDIR»'
(cd src/unix; 						\
	rm -vf Rscript /«PKGBUILDDIR»/debian/r-base-core/usr/bin/Rscript;	\
	/usr/bin/make	CFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT"		\
		CXXFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT"	\
		FFLAGS="-g -O2 -fstack-protector-strong -D_REENTRANT"	\
		CC="gcc -std=gnu99"				\
		CXX=g++			\
		F77=gfortran			\
		RHOME=/usr/lib/R			\
		DESTDIR=/«PKGBUILDDIR»/debian/r-base-core			\
		install-Rscript )
removed 'Rscript'
removed '/«PKGBUILDDIR»/debian/r-base-core/usr/bin/Rscript'
make[1]: Entering directory '/«PKGBUILDDIR»/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -Wl,-Bsymbolic-functions -Wl,-z,relro -DR_HOME='"/usr/lib/R"' \
  -o Rscript ./Rscript.c
make[1]: Leaving directory '/«PKGBUILDDIR»/src/unix'
#ls -ltr /«PKGBUILDDIR»/debian/r-base-core/usr/bin/
#strings src/unix/Rscript					
cp -vax src/unix/Rscript /«PKGBUILDDIR»/debian/r-base-core/usr/bin/
'src/unix/Rscript' -> '/«PKGBUILDDIR»/debian/r-base-core/usr/bin/Rscript'
#ls -ltr /«PKGBUILDDIR»/debian/r-base-core/usr/bin/
#strings /«PKGBUILDDIR»/debian/r-base-core/usr/bin/Rscript
(cd src/nmath/standalone;				\
	/usr/bin/make DESTDIR=/«PKGBUILDDIR»/debian/r-base-core install )
make[1]: Entering directory '/«PKGBUILDDIR»/src/nmath/standalone'
make[2]: Entering directory '/«PKGBUILDDIR»/src/include'
make[2]: 'Rmath.h' is up to date.
make[2]: Leaving directory '/«PKGBUILDDIR»/src/include'
/«PKGBUILDDIR»/debian/r-base-core/usr/share/R/include/Rmath.h is unchanged
make[1]: Leaving directory '/«PKGBUILDDIR»/src/nmath/standalone'
chmod a+x	/«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/sh/echo.sh		
rm -v	/«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/COPYING  		
removed '/«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/COPYING'
(cd /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/; \
	ln -s ../../share/common-licenses/GPL-2 COPYING)
rm -v	/«PKGBUILDDIR»/debian/r-base-core/usr/share/R/doc/COPYING  	
removed '/«PKGBUILDDIR»/debian/r-base-core/usr/share/R/doc/COPYING'
(cd /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/doc; \
	ln -s ../../../share/common-licenses/GPL-2 COPYING)
# edd 03 Oct 2006  use link into /usr/share/, not /usr/lib/
(cd /«PKGBUILDDIR»/debian/r-base-core/usr/share/texmf/tex/latex && 	\
    ln -s ../../../R/share/texmf R)
dh_movefiles	--sourcedir=debian/r-base-core -pr-doc-html
dh_movefiles	--sourcedir=debian/r-base-core -pr-base-html
dh_movefiles	--sourcedir=debian/r-base-core -pr-base-latex
make		prefix=/«PKGBUILDDIR»/debian/r-base-core/usr			\
		rdocdir=/«PKGBUILDDIR»/debian/r-base-core/usr/share/R/doc	\
		install-pdf
make[1]: Entering directory '/«PKGBUILDDIR»'
make[2]: Entering directory '/«PKGBUILDDIR»/doc/manual'
creating doc/manual/version.tex
collecting LaTeX docs for package 'base' ...
Converting parsed Rd's to LaTeX ..........................................
collecting LaTeX docs for package 'tools' ...
Converting parsed Rd's to LaTeX ......
collecting LaTeX docs for package 'utils' ...
Converting parsed Rd's to LaTeX .............
collecting LaTeX docs for package 'grDevices' ...
Converting parsed Rd's to LaTeX ......
collecting LaTeX docs for package 'graphics' ...
Converting parsed Rd's to LaTeX .......
collecting LaTeX docs for package 'stats' ...
Converting parsed Rd's to LaTeX ..............................
collecting LaTeX docs for package 'datasets' ...
Converting parsed Rd's to LaTeX ........
collecting LaTeX docs for package 'methods' ...
Converting parsed Rd's to LaTeX .......
collecting LaTeX docs for package 'grid' ...
Converting parsed Rd's to LaTeX .........
collecting LaTeX docs for package 'splines' ...
Converting parsed Rd's to LaTeX .
collecting LaTeX docs for package 'stats4' ...
Converting parsed Rd's to LaTeX .
collecting LaTeX docs for package 'tcltk' ...
Converting parsed Rd's to LaTeX .
collecting LaTeX docs for package 'compiler' ...
Converting parsed Rd's to LaTeX 
collecting LaTeX docs for package 'parallel' ...
Converting parsed Rd's to LaTeX .
PDF/LaTeX documentation: full reference index ...
This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(./fullrefman.tex
LaTeX2e <2015/01/01>
Babel <3.9l> and hyphenation patterns for 2 languages loaded.
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Document Class: book 2014/09/29 v1.4h Standard LaTeX document class
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(../../share/texmf/tex/latex/Rd.sty
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(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/zi4.sty
`inconsolata-zi4' v1.05, 2014/06/22 Text macros for Inconsolata (msharpe)
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Writing index file fullrefman.idx
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(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
(/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex)
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Chapter 1.
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Underfull \hbox (badness 4595) in paragraph at lines 40--43
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igh-est, for
[1] [2]
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[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1
/ptm/m/n/10 such that \T1/zi4/m/n/10 1 - x != 1\T1/ptm/m/n/10 .

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/ptm/m/n/10 if

Underfull \hbox (badness 10000) in paragraph at lines 141--149
\T1/zi4/m/n/10 double.base \T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.roundin
g \T1/ptm/m/n/10 is 0; oth-er-wise, it is

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[]\T1/ptm/m/n/10 the largest nor-mal-ized floating-point num-ber. Typ-i-cally, 
it is equal to
[3] [4] [5]
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[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/
10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues
[6]
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[]\T1/ptm/m/n/10 logical: should \T1/zi4/m/n/10 minlength \T1/ptm/m/n/10 be ob-
served strictly? Note that set-ting
[7] [8]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ',
[9] [10] [11] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd)
[12] [13] [14] [15] [16] [17] [18]
Underfull \hbox (badness 2671) in paragraph at lines 1118--1121
[]\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec-
tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis
t of length
[19] [20] [21] [22]
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[]\T1/zi4/m/n/10 %% \T1/ptm/m/n/10 in-di-cates \T1/zi4/m/n/10 x mod y \T1/ptm/m
/n/10 and \T1/zi4/m/n/10 %/% \T1/ptm/m/n/10 in-di-cates in-te-ger di-vi-sion. I
t is guar-an-teed that
[23] [24] [25] [26] [27] [28] [29]
Overfull \hbox (26.88089pt too wide) in paragraph at lines 1845--1845
 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 
[30] [31] [32]
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[]\T1/ptm/m/n/10 a date-time ob-ject, or some-thing which can be co-erced by
[33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47]
[48] [49] [50] [51] [52] [53] [54] [55]
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[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
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[71] [72] [73] [74]
Underfull \hbox (badness 2521) in paragraph at lines 4718--4720
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
[75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89]
[90] [91] [92] [93]
Underfull \hbox (badness 2096) in paragraph at lines 5935--5948
[]\T1/ptm/m/n/10 New restarts for \T1/zi4/m/n/10 withRestarts \T1/ptm/m/n/10 ca
n be spec-i-fied in sev-eral ways. The sim-plest is in
[94] [95] [96]
Overfull \hbox (58.35893pt too wide) in paragraph at lines 6136--6139
[]\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa
ult", "internal", "wininet", "libcurl")\T1/ptm/m/n/10 :
[97] [98]
Underfull \hbox (badness 10000) in paragraph at lines 6276--6279
[]\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo
st gen-eral form (from RFC1738) is
[99]
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Underfull \hbox (badness 1442) in paragraph at lines 6437--6443
[]\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \
T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re-
move a

Underfull \hbox (badness 1248) in paragraph at lines 6437--6443
\T1/ptm/m/n/10 Byte Or-der Mark if present (which it of-ten is for files and we
b-pages gen-er-ated by Mi-

Underfull \hbox (badness 2080) in paragraph at lines 6437--6443
\T1/ptm/m/n/10 crosoft ap-pli-ca-tions). If a BOM is re-quired (it is not rec-o
m-mended) when writ-ing it
[101]
Underfull \hbox (badness 3568) in paragraph at lines 6498--6505
\T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z
i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as
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[105] [106] [107] [108] [109] [110] [111] [112]
Underfull \hbox (badness 4595) in paragraph at lines 7191--7194
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h
igh-est, for
[113]
Underfull \hbox (badness 3000) in paragraph at lines 7227--7229
[]\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0, \T1/zi4/m/n/10 
getOption("OutDec") \T1/ptm/m/n/10 is con-sulted when la-bels are con-structed 
for

Underfull \hbox (badness 2351) in paragraph at lines 7252--7255
[][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c
ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][
]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T
1/ptm/m/n/10 ,
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Underfull \hbox (badness 10000) in paragraph at lines 7502--7513
[]\T1/zi4/m/n/10 data.frame \T1/ptm/m/n/10 con-verts each of its ar-gu-ments to
 a data frame by call-ing
[118]
Underfull \hbox (badness 4479) in paragraph at lines 7574--7583
[][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 
, [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[]
[][] \T1/ptm/m/n/10 (for the col-umn names),

Underfull \hbox (badness 2469) in paragraph at lines 7574--7583
[][]\T1/zi4/m/n/10 [.data.frame[][][] \T1/ptm/m/n/10 for sub-set-ting meth-ods,
 [][]\T1/zi4/m/n/10 Math.data.frame[][][] \T1/ptm/m/n/10 etc, about \T1/ptm/m/i
t/10 Group \T1/ptm/m/n/10 meth-ods for
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[143]
Underfull \hbox (badness 1394) in paragraph at lines 9182--9187
[]\T1/ptm/m/n/10 Subtraction of date-time ob-jects gives an ob-ject of this cla
ss, by call-ing \T1/zi4/m/n/10 difftime \T1/ptm/m/n/10 with
[144] [145] [146] [147] [148]
Underfull \hbox (badness 1052) in paragraph at lines 9519--9524
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 dontCheck \T1/ptm/m/n/10 func-tion is the s
ame as [][]\T1/zi4/m/n/10 identity[][][]\T1/ptm/m/n/10 , but is in-ter-preted b
y \T1/zi4/m/n/10 R CMD check

Underfull \hbox (badness 1231) in paragraph at lines 9519--9524
\T1/ptm/m/n/10 code anal-y-sis as a di-rec-tive to sup-press check-ing of \T1/z
i4/m/n/10 x\T1/ptm/m/n/10 . Cur-rently this is only used by
[149] [150]
Underfull \hbox (badness 10000) in paragraph at lines 9657--9661
[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / IEEE _ 754-[]198
5$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wi
ki / IEEE _
[151] [152] [153] [154] [155] [156]
Underfull \hbox (badness 2150) in paragraph at lines 10061--10064
[]\T1/ptm/m/n/10 logical in-di-cat-ing if du-pli-ca-tion should be con-sid-ered
 from the re-verse
[157]
Underfull \hbox (badness 6396) in paragraph at lines 10075--10083
[]\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len
t method def-i-ni-tions for

Underfull \hbox (badness 2409) in paragraph at lines 10116--10123
[]\T1/ptm/m/n/10 Except for fac-tors, log-i-cal and raw vec-tors the de-fault \
T1/zi4/m/n/10 nmax = NA \T1/ptm/m/n/10 is equiv-a-lent to
[158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169]
[170] [171] [172] [173]
Underfull \hbox (badness 4569) in paragraph at lines 11160--11164
[]\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been
 passed as an ar-gu-ment

Underfull \hbox (badness 2401) in paragraph at lines 11160--11164
\T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller'
s en-vi-ron-ment, i.e., one needs
[174] [175] [176] [177] [178] [179] [180] [181]
Underfull \hbox (badness 2698) in paragraph at lines 11736--11745
[]\T1/ptm/m/n/10 Both \T1/zi4/m/n/10 $ \T1/ptm/m/n/10 and \T1/zi4/m/n/10 [[ \T1
/ptm/m/n/10 can be ap-plied to en-vi-ron-ments. Only char-ac-ter in-dices are a
l-lowed

Underfull \hbox (badness 4341) in paragraph at lines 11736--11745
\T1/ptm/m/n/10 and no par-tial match-ing is done. The se-man-tics of these op-e
r-a-tions are those of
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Underfull \hbox (badness 6236) in paragraph at lines 12380--12383
[]\T1/ptm/m/n/10 For \T1/zi4/m/n/10 iconv \T1/ptm/m/n/10 this will give the im-
ple-men-ta-tion as well as the ver-sion, for ex-am-ple
[192] [193] [194] [195] [196] [197]
Underfull \hbox (badness 2253) in paragraph at lines 12758--12760
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
[198]
Underfull \hbox (badness 1565) in paragraph at lines 12829--12833
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo
lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi
le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/
10 , and
[199]
Underfull \hbox (badness 10000) in paragraph at lines 12873--12875
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m
/n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with
[200] [201]
Underfull \hbox (badness 1466) in paragraph at lines 13011--13014
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/
zi4/m/n/10 file.copy \T1/ptm/m/n/10 and
[202]
Underfull \hbox (badness 10000) in paragraph at lines 13119--13123
[][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac
cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [
][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/
zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 ,
[203]
Underfull \hbox (badness 10000) in paragraph at lines 13130--13133
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik
i /
[204] [205] [206] [207]
Underfull \hbox (badness 3965) in paragraph at lines 13382--13386
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
[208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218]
Underfull \hbox (badness 4429) in paragraph at lines 14112--14115
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
\T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for
[219]
Underfull \hbox (badness 10000) in paragraph at lines 14204--14206
[]\T1/ptm/m/n/10 If you set \T1/zi4/m/n/10 format \T1/ptm/m/n/10 it over-rides 
the set-ting of \T1/zi4/m/n/10 mode\T1/ptm/m/n/10 , so

Underfull \hbox (badness 10000) in paragraph at lines 14210--14214
[]\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b
ers on the dec-i-mal point, so
[220]
Underfull \hbox (badness 10000) in paragraph at lines 14252--14256
[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in
 \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt
m/m/n/10 3.2.0: for use

Underfull \hbox (badness 4156) in paragraph at lines 14252--14256
\T1/ptm/m/n/10 within [][]\T1/zi4/m/n/10 print[][][] \T1/ptm/m/n/10 meth-ods in
 pack-ages which might be used with ear-lier ver-sions: use
[221]
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[223] [224] [225] [226] [227] [228] [229]
Underfull \hbox (badness 2452) in paragraph at lines 14832--14836
[]\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m
ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-

Underfull \hbox (badness 1147) in paragraph at lines 14832--14836
\T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to
 the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_
WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and
[230] [231] [232]
Underfull \hbox (badness 1092) in paragraph at lines 15005--15010
[][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t
he DLL has been loaded us-ing
[233] [234] [235] [236]
Underfull \hbox (badness 6741) in paragraph at lines 15253--15257
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \
T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10
 ,
[237] [238] [239] [240]
Underfull \hbox (badness 1867) in paragraph at lines 15559--15566
[]\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][]
[] (or char-ac-ter string for
[241] [242] [243] [244]
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[246]
Underfull \hbox (badness 3679) in paragraph at lines 15939--15941
[]\T1/ptm/m/n/10 The TRE li-brary of Ville Lau-rikari ([][]$\T1/zi4/m/n/10 http
 : / / laurikari . net / tre/$[][]\T1/ptm/m/n/10 ) is used ex-cept for
[247] [248] [249] [250] [251] [252] [253]
Underfull \hbox (badness 1478) in paragraph at lines 16419--16422
[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
[254] [255] [256] [257]
Underfull \hbox (badness 10000) in paragraph at lines 16670--16672
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 http : / / www
 . unicode . org / reports / tr35 /
[258] [259] [260] [261] [262] [263] [264] [265] [266]
Underfull \hbox (badness 1442) in paragraph at lines 17233--17235
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see
[267]
Underfull \hbox (badness 2452) in paragraph at lines 17325--17341
[][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c
omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 ,
 [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi
cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\
T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 ,
[268] [269] [270] [271] [272] [273] [274]
Underfull \hbox (badness 1248) in paragraph at lines 17733--17736
[]\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type
s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n
/10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/
m/n/10 ,
[275] [276] [277] [278]
Underfull \hbox (badness 4739) in paragraph at lines 17989--17991
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
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[291] [292] [293] [294]
Underfull \hbox (badness 1360) in paragraph at lines 18937--18942
\T1/zi4/m/n/10 "none"\T1/ptm/m/n/10 . It is in-tended for the ver-sion of OpenS
SL used, but not all

Underfull \hbox (badness 10000) in paragraph at lines 18960--18966
[][][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / sslcerts . html$[][]
 \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs /

Underfull \hbox (badness 1127) in paragraph at lines 18960--18966
\T1/zi4/m/n/10 ssl-[]compared . html$[][] \T1/ptm/m/n/10 for more de-tails on S
SL ver-sions. Nor-mally \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 used with \T1/phv
/m/n/10 R
[295]
Underfull \hbox (badness 10000) in paragraph at lines 19033--19037
[]\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an
d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory

Underfull \hbox (badness 2460) in paragraph at lines 19033--19037
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/
10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T
1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10
 '
[296] [297]
Underfull \hbox (badness 1509) in paragraph at lines 19168--19175
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 library \T1/ptm/m/n/10 is called with no \T1
/zi4/m/n/10 package \T1/ptm/m/n/10 or \T1/zi4/m/n/10 help \T1/ptm/m/n/10 ar-gu-
ment, it lists all avail-able pack-ages

Underfull \hbox (badness 1354) in paragraph at lines 19168--19175
\T1/ptm/m/n/10 Use \T1/zi4/m/n/10 .packages(all = TRUE) \T1/ptm/m/n/10 to ob-ta
in just the names of all avail-able pack-ages, and

Underfull \hbox (badness 1014) in paragraph at lines 19184--19189
[]\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi
s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1
0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if
[298] [299] [300] [301] [302] [303] [304] [305] [306] [307] [308] [309]
Underfull \hbox (badness 1264) in paragraph at lines 19914--19919
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
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Underfull \hbox (badness 10000) in paragraph at lines 20668--20670
[]\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n
/10 has the prop-erty that
[321] [322] [323] [324] [325] [326] [327] [328] [329] [330] [331] [332]
[333] [334] [335] [336]
Underfull \hbox (badness 1655) in paragraph at lines 21666--21672
[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Data _ compressi
on$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-sion,
[337] [338] [339]
Underfull \hbox (badness 1484) in paragraph at lines 21827--21835
[]\T1/ptm/m/n/10 The address-space limit is 2Gb un-der 32-bit Win-dows un-less 
the OS's de-fault has been
[340] [341] [342] [343]
Underfull \hbox (badness 2790) in paragraph at lines 22098--22101
[]\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s
ages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 22098--22101
\T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m
es-sages, so can be sup-pressed by
[344] [345] [346] [347]
Underfull \hbox (badness 1194) in paragraph at lines 22379--22382
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha
n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 .
 It calls
[348] [349] [350] [351]
Underfull \hbox (badness 10000) in paragraph at lines 22585--22591
[]\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 
, \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond-
ing

Underfull \hbox (badness 5862) in paragraph at lines 22585--22591
\T1/ptm/m/n/10 list, i.e., \T1/zi4/m/n/10 names(as.list(env, all.names = TRUE))
 \T1/ptm/m/n/10 which are also given by

Underfull \hbox (badness 10000) in paragraph at lines 22595--22598
[]\T1/ptm/m/n/10 It is pos-si-ble to up-date just part of the names at-tribute 
via the gen-eral rules:

Underfull \hbox (badness 10000) in paragraph at lines 22595--22598
\T1/ptm/m/n/10 see the ex-am-ples. This works be-cause the ex-pres-sion there i
s eval-u-ated as
[352] [353] [354] [355] [356] [357] [358] [359] [360] [361] [362] [363]
[364]
Underfull \hbox (badness 10000) in paragraph at lines 23487--23489
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m
ore ef-fi-cient than
[365] [366] [367] [368]
Underfull \hbox (badness 1199) in paragraph at lines 23701--23707
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 is.numeric \T1/ptm/m/n/
10 re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 if its ar-gu-ment is of [][]mode
[][][] \T1/zi4/m/n/10 "numeric"

Underfull \hbox (badness 2027) in paragraph at lines 23701--23707
\T1/ptm/m/n/10 ([][]type[][][] \T1/zi4/m/n/10 "double" \T1/ptm/m/n/10 or type \
T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 ) and not a fac-tor, and \T1/zi4/m/n/10 F
ALSE \T1/ptm/m/n/10 oth-er-wise. That is,
[369] [370] [371] [372] [373] [374] [375] [376]
Underfull \hbox (badness 1038) in paragraph at lines 24266--24275
[]\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/
10 R \T1/ptm/m/n/10 starts up. Ini-tially

Underfull \hbox (badness 1881) in paragraph at lines 24276--24279
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

Underfull \hbox (badness 6220) in paragraph at lines 24295--24297
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see

[377]
Underfull \hbox (badness 10000) in paragraph at lines 24367--24377
[]\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/zi4/m
/n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to

Underfull \hbox (badness 2142) in paragraph at lines 24378--24384
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr
ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 1968) in paragraph at lines 24391--24396
[]\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p
tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 10000) in paragraph at lines 24401--24403
[]\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v
alue
[378] [379] [380]
Underfull \hbox (badness 10000) in paragraph at lines 24645--24651
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/
n/10 setRepositories[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 24645--24651
\T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "http://bioconductor.org"\T1/p
tm/m/n/10 ' or the Eu-ro-pean mir-ror

Underfull \hbox (badness 10000) in paragraph at lines 24645--24651
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 "http://bioconductor.statistik.tu-dortmund.de"\T
1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 10000) in paragraph at lines 24658--24661
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][
][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10
 and

Underfull \hbox (badness 2689) in paragraph at lines 24682--24684
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see
[381]
Underfull \hbox (badness 10000) in paragraph at lines 24714--24719
[]\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/
10 (and in-di-rectly

Underfull \hbox (badness 1629) in paragraph at lines 24720--24731
\T1/ptm/m/n/10 si-ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi
4/m/n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use an
d

Underfull \hbox (badness 7203) in paragraph at lines 24732--24735
[]\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos
t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/
n/10 and

Underfull \hbox (badness 4084) in paragraph at lines 24742--24754
\T1/ptm/m/n/10 Pos-si-ble val-ues are \T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (t
he de-fault ex-cept un-der a CRAN OS X build),

Underfull \hbox (badness 10000) in paragraph at lines 24742--24754
\T1/zi4/m/n/10 "mac.binary."\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "mac.binary.maveric
ks" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "both" \T1/ptm/m/n/10 (the de-fault for C
RAN

Underfull \hbox (badness 7397) in paragraph at lines 24742--24754
\T1/ptm/m/n/10 OS X builds). Win-dows uses \T1/zi4/m/n/10 "win.binary"\T1/ptm/m
/n/10 . (\T1/zi4/m/n/10 "mac.binary.leopard" \T1/ptm/m/n/10 and

Underfull \hbox (badness 10000) in paragraph at lines 24756--24763
[]\T1/ptm/m/n/10 URLs of the repos-i-to-ries for use by [][]\T1/zi4/m/n/10 upda
te.packages[][][]\T1/ptm/m/n/10 . De-faults to

Underfull \hbox (badness 10000) in paragraph at lines 24756--24763
\T1/zi4/m/n/10 c(CRAN="@CRAN@")\T1/ptm/m/n/10 , a value that causes some util-i
-ties to prompt for a

Underfull \hbox (badness 6380) in paragraph at lines 24756--24763
\T1/ptm/m/n/10 CRAN mir-ror. To avoid this do set the CRAN mir-ror, by some-thi
ng like

Underfull \hbox (badness 1082) in paragraph at lines 24756--24763
\T1/zi4/m/n/10 local({r <- getOption("repos"); r["CRAN"] <- "http://my.local.cr
an";
[382] [383] [384] [385] [386]
Underfull \hbox (badness 10000) in paragraph at lines 25077--25081
[]\T1/ptm/m/n/10 The outer prod-uct of the ar-rays \T1/zi4/m/n/10 X \T1/ptm/m/n
/10 and \T1/zi4/m/n/10 Y \T1/ptm/m/n/10 is the ar-ray \T1/zi4/m/n/10 A \T1/ptm/
m/n/10 with di-men-sion

Underfull \hbox (badness 10000) in paragraph at lines 25077--25081
\T1/zi4/m/n/10 c(dim(X), dim(Y)) \T1/ptm/m/n/10 where el-e-ment \T1/zi4/m/n/10 
A[c(arrayindex.x, arrayindex.y)]
[387] [388] [389] [390] [391]
Underfull \hbox (badness 1735) in paragraph at lines 25395--25399
[]\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 paste() \T1/ptm/m/n/10 co-erces [][]\
T1/zi4/m/n/10 NA_character_[][][]\T1/ptm/m/n/10 , the char-ac-ter miss-ing valu
e, to \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 which
[392] [393] [394] [395] [396] [397] [398] [399] [400] [401]
Underfull \hbox (badness 2726) in paragraph at lines 25956--25959
[]\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di
-cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put,
 see
[402] [403] [404] [405] [406] [407] [408] [409] [410] [411] [412] [413]
[414]
Underfull \hbox (badness 1052) in paragraph at lines 26775--26780
[]\T1/zi4/m/n/10 qr.X \T1/ptm/m/n/10 re-turns $\OML/cmm/b/it/10 X$\T1/ptm/m/n/1
0 , the orig-i-nal ma-trix from which the qr ob-ject was con-structed, pro-vide
d
[415] [416] [417] [418] [419] [420] [421] [422] [423] [424] [425]
Underfull \hbox (badness 1533) in paragraph at lines 27503--27506
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[426] [427]
Underfull \hbox (badness 1163) in paragraph at lines 27665--27675
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\
T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in
[428] [429] [430] [431] [432] [433] [434] [435] [436] [437] [438] [439]
[440] [441] [442] [443] [444] [445] [446] [447] [448] [449] [450] [451]
Underfull \hbox (badness 10000) in paragraph at lines 29159--29163
[]\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n
/10 sup-port `named cap-ture'. If groups are named, e.g.,

Underfull \hbox (badness 1221) in paragraph at lines 29159--29163
\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t
he matches are also re-turned by name.

Underfull \hbox (badness 6188) in paragraph at lines 29181--29183
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p
ubs . opengroup . org / onlinepubs / 9699919799 /
[452] [453] [454] [455] [456] [457] [458] [459] [460]
Underfull \hbox (badness 1655) in paragraph at lines 29726--29728
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm
/m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for
[461] [462] [463] [464] [465] [466] [467] [468] [469] [470] [471]
Underfull \hbox (badness 10000) in paragraph at lines 30394--30398
[]\T1/zi4/m/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my c
ur-rent workspace', i.e.,
[472] [473] [474]
Underfull \hbox (badness 2302) in paragraph at lines 30634--30641
[]\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d
e-fined as $[]$,

Underfull \hbox (badness 2837) in paragraph at lines 30634--30641
\T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no
n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non
-missing

Underfull \hbox (badness 2980) in paragraph at lines 30634--30641
\T1/ptm/m/n/10 val-ues. In the case \T1/zi4/m/n/10 center = TRUE\T1/ptm/m/n/10 
, this is the same as the stan-dard de-vi-a-tion,

Underfull \hbox (badness 2181) in paragraph at lines 30634--30641
\T1/ptm/m/n/10 but in gen-eral it is not. (To scale by the stan-dard de-vi-a-ti
ons with-out cen-ter-ing, use
[475] [476] [477]
Underfull \hbox (badness 2261) in paragraph at lines 30788--30793
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i
t ap-plies to all fields; oth-er-wise, if

Underfull \hbox (badness 10000) in paragraph at lines 30815--30821
[]\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac-
ters
[478]
Underfull \hbox (badness 10000) in paragraph at lines 30891--30896
[]\T1/ptm/m/n/10 Note that since \T1/zi4/m/n/10 sep \T1/ptm/m/n/10 is a sep-a-r
a-tor and not a ter-mi-na-tor, read-ing a file by
[479] [480] [481] [482] [483] [484] [485] [486] [487] [488] [489] [490]
[491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501] [502]
[503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514]
[515] [516] [517] [518] [519] [520] [521]
Underfull \hbox (badness 1072) in paragraph at lines 33675--33679
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

Underfull \hbox (badness 10000) in paragraph at lines 33680--33684
[]\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/
10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 -
-no-init-file\T1/ptm/m/n/10 ',
[522]
Underfull \hbox (badness 10000) in paragraph at lines 33708--33714
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

Underfull \hbox (badness 10000) in paragraph at lines 33708--33714
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,

Underfull \hbox (badness 1320) in paragraph at lines 33708--33714
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in

Underfull \hbox (badness 3343) in paragraph at lines 33721--33728
\T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment 
vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 33721--33728
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 33721--33728
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[523] [524] [525] [526] [527]
Underfull \hbox (badness 10000) in paragraph at lines 34012--34018
[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form
at \T1/ptm/m/n/10 meth-ods is

Underfull \hbox (badness 1152) in paragraph at lines 34012--34018
\T1/zi4/m/n/10 "%Y-%m-%d %H:%M:%S" \T1/ptm/m/n/10 if any el-e-ment has a time c
om-po-nent which is
[528] [529] [530] [531] [532] [533] [534] [535] [536] [537] [538] [539]
[540] [541] [542] [543] [544] [545] [546] [547] [548] [549] [550] [551]
[552] [553] [554] [555]
Underfull \hbox (badness 3333) in paragraph at lines 35794--35799
[]\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi
s may need to be matched ex-plic-itly: for ex-am-ple
[556] [557] [558] [559] [560] [561] [562] [563] [564] [565]
Underfull \hbox (badness 1472) in paragraph at lines 36401--36404
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee
p their source in-clud-ing com-ments, see
[566] [567] [568] [569] [570] [571] [572] [573] [574] [575]
Underfull \hbox (badness 2671) in paragraph at lines 37063--37066
[]\T1/ptm/m/n/10 levels to re-move for all fac-tors in \T1/zi4/m/n/10 ...\T1/pt
m/m/n/10 . If set to \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 , it im-plies
[576] [577] [578] [579] [580] [581]
Underfull \hbox (badness 10000) in paragraph at lines 37467--37470
[][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$http : / / developer . r-[]project . org /
[582] [583]
Underfull \hbox (badness 10000) in paragraph at lines 37588--37592
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 getTaskCallbackNames
[][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer .
[584]
Underfull \hbox (badness 10000) in paragraph at lines 37650--37654
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[
][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer .
[585] [586] [587] [588] [589] [590] [591] [592] [593] [594] [595] [596]
[597] [598] [599] [600] [601] [602] [603] [604]
Underfull \hbox (badness 1990) in paragraph at lines 38945--38953
[]\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e
r-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 38945--38953
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less
[605] [606] [607] [608]
Underfull \hbox (badness 1515) in paragraph at lines 39217--39222
[]\T1/ptm/m/n/10 On most plat-forms `file' in-cludes sym-bolic links, fi-fos an
d sock-ets. Prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 2.15.0
[609] [610] [611] [612]
Underfull \hbox (badness 1917) in paragraph at lines 39447--39454
[]\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/
ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute
[613] [614] [615] [616] [617] [618] [619] [620] [621]
Underfull \hbox (badness 3668) in paragraph at lines 40023--40025
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[622]
Underfull \hbox (badness 2401) in paragraph at lines 40128--40132
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war
n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[623] [624] [625]
Underfull \hbox (badness 2111) in paragraph at lines 40297--40302
\T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n
ot empty, these are used as col-umn names.

Underfull \hbox (badness 6542) in paragraph at lines 40313--40318
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m
/n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has
 a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is
[626] [627] [628] [629] [630] [631] [632]
Underfull \hbox (badness 10000) in paragraph at lines 40747--40752
[]\T1/ptm/m/n/10 This is a spe-cial case of rank-ing, but as a less gen-eral fu
nc-tion than [][]\T1/zi4/m/n/10 rank[][][]

Underfull \hbox (badness 10000) in paragraph at lines 40747--40752
\T1/ptm/m/n/10 is more suit-able to be made generic. The de-fault method is sim
-i-lar to
[633] [634]
Underfull \hbox (badness 5417) in paragraph at lines 40839--40843
[]\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl
y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[635]
Underfull \hbox (badness 10000) in paragraph at lines 40900--40904
[]\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard
' reg-exps, in-clud-ing el-e-ments named
[636]) (./compiler-pkg.tex
Chapter 2.
[637] [638] [639] [640]) (./datasets-pkg.tex
Chapter 3.

Underfull \hbox (badness 10000) in paragraph at lines 12--14
[]\T1/ptm/m/n/10 This pack-age con-tains a va-ri-ety of datasets. For a com-ple
te list, use
[641] [642] [643] [644] [645] [646] [647] [648] [649] [650] [651] [652]
[653] [654] [655] [656] [657] [658] [659] [660] [661] [662] [663] [664]
[665] [666] [667] [668] [669] [670] [671] [672] [673] [674] [675] [676]
[677] [678] [679] [680] [681] [682] [683] [684] [685] [686] [687]
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[689] [690] [691] [692] [693] [694] [695] [696] [697] [698] [699] [700]
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[]\T1/ptm/m/n/10 For some pho-tos of Methuse-lah Walk see [][]$\T1/zi4/m/n/10 h
ttp : / / www . ltrr . arizona . edu / ~hallman /
[708]
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[710] [711] [712]
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Underfull \vbox (badness 10000) has occurred while \output is active [714]
[715] [716] [717] [718] [719] [720] [721]) (./grDevices-pkg.tex [722]
Chapter 4.
[723] [724] [725] [726] [727] [728] [729] [730] [731] [732] [733] [734]
[735] [736] [737] [738] [739]
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[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
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Underfull \hbox (badness 1852) in paragraph at lines 1263--1266
[]\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col-
ors that will be used in plot-ting, call-ing
[744] [745] [746]
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\T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\
T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/
10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and
[747]
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[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 if the de-vice does not sup-port cap-ture,
 oth-er-wise a ma-trix of color names (for
[748]
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[]\T1/ptm/m/n/10 logical; if \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , the func-tion 
also re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 when
[749] [750] [751] [752]
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\T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 ,
 \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/
10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1
/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 ,
[753] [754]
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[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
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[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
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[]\T1/ptm/m/n/10 A length two in-te-ger vec-tor \T1/zi4/m/n/10 nr, nc \T1/ptm/m
/n/10 giv-ing the num-ber of rows and columns, ful-fill-ing
[774] [775] [776] [777] [778]
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[]\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv
e a C in-te-ger for-mat such as

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[]\T1/ptm/m/n/10 title string to em-bed as the `\T1/zi4/m/n/10 /Title\T1/ptm/m/
n/10 ' field in the file. De-faults to
[779] [780]
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[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 paper \T1/ptm/m/n/10 ar-gu-ment sets the `\
T1/zi4/m/n/10 /MediaBox\T1/ptm/m/n/10 ' en-try in the file, which de-faults to 
\T1/zi4/m/n/10 width \T1/ptm/m/n/10 by
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\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-
[792] [793]
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[]\T1/ptm/m/n/10 The TIFF spec-i-fi-ca-tion, in-clud-ing ex-ten-sions, at [][]$
\T1/zi4/m/n/10 http : / / partners . adobe . com / public /
[794]
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[]\T1/ptm/m/n/10 title string to em-bed as the \T1/zi4/m/n/10 Title \T1/ptm/m/n
/10 com-ment in the file. De-faults to
[795]
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[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
[796]
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\T1/ptm/m/n/10 For use in this way you will prob-a-bly want to use [][]\T1/zi4/
m/n/10 setEPS[][][]() \T1/ptm/m/n/10 to set the de-faults as

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\T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4
/m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/
zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm
/m/n/10 ,

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\T1/ptm/m/n/10 PostScript de-vice is us-ing URW fonts, you will ob-tain ac-cess
 to more char-ac-ters and

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\T1/ptm/m/n/10 more ap-pro-pri-ate met-rics by us-ing these names. To make thes
e eas-ier to re-mem-ber,

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[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East 
Asian lan-guages -- see
[797] [798]
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[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \
T1/zi4/m/n/10 "rgb"\T1/ptm/m/n/10 ) (which is RGB+gray) and
[799]
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[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
[800] [801]
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[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

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\T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/
n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1
0 ,

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\T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino"
 \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG
othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 ,
[802]
Underfull \hbox (badness 10000) in paragraph at lines 5048--5055
[]\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4
/m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu /

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\T1/zi4/m/n/10 chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Lunde's CJK
V re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly .
[803] [804] [805]
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[]\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo
nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T
1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/
n/10 ,
[806]
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[]\T1/ptm/m/n/10 title for the Quartz win-dow (ap-plies to on-screen out-put on
ly), de-fault
[807] [808] [809] [810] [811] [812] [813]
Underfull \hbox (badness 10000) in paragraph at lines 5686--5689
[]\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red
/green/blue) into HSV space
[814]
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[816] [817] [818] [819]
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[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
[820] [821]
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[]\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK 
lan-guages and
[822] [823] [824] [825]
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[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1
0 "AvantGarde"\T1/ptm/m/n/10 ,
[826] [827] [828]
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[]\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n
umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of
[829] [830] [831]) (./graphics-pkg.tex [832]
Chapter 5.
[833] [834] [835] [836] [837] [838] [839] [840] [841] [842] [843]
Underfull \hbox (badness 10000) in paragraph at lines 683--690
[]\T1/zi4/m/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/p
tm/m/n/10 in-ter-face to the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/pt
m/m/n/10 in
[844] [845] [846] [847]
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[][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works 
nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n
/10 ,
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[865] [866] [867] [868] [869]
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\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
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[]\T1/ptm/m/n/10 vector of back-ground (fill) col-ors for the open plot sym-bol
s given by
[897] [898] [899] [900] [901] [902] [903]
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[]\T1/ptm/m/n/10 a func-tion which in-di-cates what should hap-pen when the dat
a con-tain
[904]
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[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used: see
[905] [906] [907] [908] [909]
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[]\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n
/10 (width, height) \T1/ptm/m/n/10 in user co-or-di-nate units.

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\T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin"
) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that
[910]
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[911]
</«PKGBUILDDIR»/library/graphics/help/figures/mai.pdf, id=15
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[914]
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[]\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2
:6\T1/ptm/m/n/10 ) cor-re-spond to
[915] [916] [917] [918] [919]
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[933] [934] [935] [936] [937] [938]
</«PKGBUILDDIR»/library/graphics/help/figures/pch.pdf, id=15
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[940]
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\T1/ptm/m/n/10 avoided (see the Warn-ings sec-tion be-low). Split-screen mode i
s ex-ited by the com-mand
[951]
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[]\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d
rawn be-tween the point \T1/zi4/m/n/10 (x0[i], y0[i]) \T1/ptm/m/n/10 and the po
int
[952] [953] [954] [955] [956] [957] [958] [959] [960] [961] [962] [963]
[964] [965] [966] [967] [968] [969] [970] [971] [972]
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[]\T1/ptm/m/n/10 The main ti-tle (on top) us-ing font and size (char-ac-ter ex-
pan-sion)

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[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font and size \T1/zi4/m/n/10 par
("font.sub") \T1/ptm/m/n/10 and color
[973] [974]pdfTeX warning (ext4): destination with the same identifier (name{Rf
n.units}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8704 \HeaderA{units}{Graphical Units}{units}
                                               [975] [976] [977] [978])
(./grid-pkg.tex
Chapter 6.

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[]\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1
/zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio
n of
[985] [986] [987] [988] [989] [990] [991] [992] [993] [994]
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[][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m
/n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10
 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 unit[][][]\T1/ptm/m/n/10 ,
[995] [996] [997] [998] [999] [1000] [1001] [1002] [1003] [1004] [1005]
[1006] [1007] [1008] [1009] [1010] [1011] [1012] [1013] [1014] [1015] [1016]
[1017] [1018] [1019] [1020] [1021] [1022] [1023] [1024] [1025] [1026] [1027]
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[1039] [1040] [1041] [1042] [1043] [1044] [1045] [1046] [1047] [1048] [1049]
[1050] [1051]
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
[1052] [1053] [1054] [1055]
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[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
[1056] [1057] [1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] [1066]
[1067] [1068] [1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076]
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\T1/ptm/m/n/10 and to spec-ify the min-i-mum or max-i-mum of a list of unit ob-
jects (e.g.,
[1077] [1078] [1079] [1080] [1081] [1082] [1083] [1084]
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[]\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by
 do-ing some-thing like
[1085] [1086] [1087] [1088]) (./methods-pkg.tex
Chapter 7.
[1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099]
[1100] [1101] [1102] [1103] [1104] [1105] [1106] [1107] [1108]
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[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \
T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package
"\T1/ptm/m/n/10 , also of class
[1109] [1110] [1111] [1112] [1113] [1114] [1115] [1116] [1117]
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[]\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c
an be an ob-ject of class

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\T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1
0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the
[1118] [1119] [1120] [1121] [1122] [1123] [1124] [1125]
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[]\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p
tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o
b-jects of class
[1126] [1127]
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[]\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1
0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re
-turned re-sult is in
[1128]
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\T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo
ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store
s the
[1129] [1130] [1131] [1132] [1133] [1134] [1135]
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[]\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na
me of the pack-age (with-out the ex-tra-ne-ous
[1136] [1137] [1138] [1139] [1140]
Underfull \hbox (badness 10000) in paragraph at lines 3667--3672
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these 
classes takes spe-cial ar-gu-ments

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[]\T1/ptm/m/n/10 The
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[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "SealedMethodDefinition" \T1/ptm/m/n/
10 is cre-ated by a call to [][]\T1/zi4/m/n/10 setMethod[][][] \T1/ptm/m/n/10 w
ith ar-gu-ment

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[]\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for 
the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar

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\T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T
1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by
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\T1/ptm/m/n/10 names cor-re-spond-ing to some or all of the for-mal ar-gu-ments
. In the pre-vi-ous ex-am-ple,

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\T1/ptm/m/n/10 if se-lect-ing class \T1/zi4/m/n/10 "track" \T1/ptm/m/n/10 for \
T1/zi4/m/n/10 x\T1/ptm/m/n/10 , find-ing that the se-lec-tion was an-other meth
-ods list and

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[]\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10
 the method to use in re-sponse to a
[1165] [1166] [1167] [1168] [1169]
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[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
[1170] [1171] [1172] [1173]
Underfull \hbox (badness 2221) in paragraph at lines 5878--5883
[]\T1/ptm/m/n/10 Two op-tional method names are in-ter-preted spe-cially, \T1/z
i4/m/n/10 initialize \T1/ptm/m/n/10 and
[1174] [1175] [1176] [1177] [1178]
Underfull \hbox (badness 1675) in paragraph at lines 6343--6349
\T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth
od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class
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                   \relax 
l.6820 \aliasA{S4}{S3Part}{S4}
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                   \relax 
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                   \relax 
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l.7102 \aliasA{Summary}{S4groupGeneric}{Summary}
                                                 [1189]
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[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
[1190] [1191] [1192]
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[]\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, 
a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal
ly
[1193] [1194] [1195] [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203]
[1204] [1205] [1206] [1207] [1208] [1209] [1210] [1211] [1212] [1213] [1214]
[1215] [1216] [1217] [1218] [1219] [1220] [1221] [1222] [1223] [1224] [1225]
[1226]
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[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1227] [1228] [1229] [1230]) (./parallel-pkg.tex
Chapter 8.

Underfull \hbox (badness 5490) in paragraph at lines 15--17
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4
/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[
][][]: see
[1231] [1232] [1233] [1234] [1235] [1236] [1237] [1238] [1239] [1240] [1241]
[1242] [1243] [1244] [1245] [1246] [1247] [1248] [1249] [1250]
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[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R
andom.seed \T1/ptm/m/n/10 when the
[1251] [1252]) (./splines-pkg.tex
Chapter 9.

Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
[1253] [1254] [1255] [1256] [1257] [1258] [1259] [1260] [1261] [1262] [1263]
[1264] [1265] [1266] [1267]) (./stats-pkg.tex [1268]
Chapter 10.
[1269] [1270] [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279]
[1280] [1281]
Underfull \hbox (badness 1412) in paragraph at lines 844--846
[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm 
\T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for
[1282] [1283] [1284] [1285] [1286] [1287] [1288] [1289]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1290] [1291] [1292]
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[]\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov", "lm") \T1/ptm/m/n/
10 or for mul-ti-ple re-sponses of class
[1293] [1294] [1295] [1296] [1297] [1298] [1299] [1300] [1301] [1302] [1303]
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[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
[1304] [1305] [1306] [1307] [1308]
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[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
[1309] [1310] [1311] [1312] [1313] [1314] [1315] [1316] [1317] [1318] [1319]
[1320] [1321]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1322] [1323] [1324] [1325] [1326] [1327] [1328] [1329] [1330] [1331] [1332]
[1333] [1334] [1335] [1336] [1337] [1338] [1339] [1340] [1341]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
[1342] [1343] [1344] [1345] [1346] [1347] [1348] [1349] [1350]
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[]\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/
ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p
tm/m/n/10 . For

Underfull \hbox (badness 2932) in paragraph at lines 5159--5161
[]\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se-
quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is 
given by
[1351] [1352] [1353] [1354]
Underfull \hbox (badness 1142) in paragraph at lines 5400--5412
\T1/ptm/m/n/10 For \T1/zi4/m/n/10 cov()\T1/ptm/m/n/10 , a non-Pearson method is
 un-usual but avail-able for the sake of com-plete-ness.
[1355] [1356] [1357]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,

Underfull \hbox (badness 1168) in paragraph at lines 5600--5605
[]\T1/ptm/m/n/10 For Spear-man's test, p-values are com-puted us-ing al-go-rith
m AS 89 for $\OML/cmm/m/it/10 n < \OT1/cmr/m/n/10 1290$ \T1/ptm/m/n/10 and
[1358] [1359] [1360] [1361] [1362] [1363] [1364] [1365]
Underfull \hbox (badness 8132) in paragraph at lines 6042--6047
\T1/ptm/m/n/10 then \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is a den-dro-gram of the sa
me graph struc-ture as \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and for each node,
[1366] [1367] [1368] [1369]
Underfull \hbox (badness 7081) in paragraph at lines 6317--6320
[]\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be
 con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method

Underfull \hbox (badness 10000) in paragraph at lines 6321--6323
[]\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra
m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also
[1370] [1371] [1372] [1373] [1374] [1375] [1376] [1377] [1378] [1379] [1380]
[1381] [1382]
Underfull \hbox (badness 10000) in paragraph at lines 7129--7132
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T
1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the
[1383] [1384]
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[]\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/zi4/m/n/10 ht
tp : / / cran . r-[]project . org / web / views /
[1385] [1386] [1387] [1388]
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[1401] [1402] [1403] [1404] [1405] [1406] [1407] [1408] [1409]
Underfull \hbox (badness 2626) in paragraph at lines 8764--8767
[]\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/
m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1410]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1411] [1412] [1413] [1414] [1415]
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[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Fligner-Killeen test of
 homogeneity of variances"\T1/ptm/m/n/10 . 
[1416] [1417] [1418] [1419] [1420] [1421] [1422] [1423] [1424] [1425]
Underfull \hbox (badness 1019) in paragraph at lines 9864--9867
[]\T1/ptm/m/n/10 See also [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org /
 wiki / Incomplete _ gamma _ function$[][]\T1/ptm/m/n/10 , or [][]$\T1/zi4/m/n/
10 http : / / dlmf .
[1426] [1427] [1428] [1429] [1430]
Underfull \hbox (badness 4518) in paragraph at lines 10125--10130
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1431] [1432] [1433] [1434]
Underfull \hbox (badness 2142) in paragraph at lines 10467--10470
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@
[1435]
Underfull \hbox (badness 1253) in paragraph at lines 10486--10489
[]\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][
]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it-
er-a-tion. Hence,
[1436]
Underfull \hbox (badness 1708) in paragraph at lines 10548--10552
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1437] [1438] [1439] [1440] [1441] [1442]
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[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to

Underfull \hbox (badness 1867) in paragraph at lines 10963--10972
\T1/ptm/m/n/10 in the row case. If ei-ther is miss-ing, as by de-fault, then th
e or-der-ing of the cor-re-
[1443] [1444] [1445] [1446] [1447] [1448] [1449] [1450]pdfTeX warning (ext4): d
estination with the same identifier (name{Rfn.hat}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.11410 \aliasA{hat}{influence.measures}{hat}
                                              [1451] [1452]
Underfull \hbox (badness 1484) in paragraph at lines 11533--11535
[]\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main
ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
[1453] [1454] [1455] [1456] [1457] [1458] [1459] [1460] [1461]
Underfull \hbox (badness 4441) in paragraph at lines 12091--12093
[]\T1/ptm/m/n/10 vector of dif-fer-enc-ing co-ef-fi-cients, so an ARMA model is
 fit-ted to

Underfull \hbox (badness 10000) in paragraph at lines 12098--12100
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa
ult[][][] \T1/ptm/m/n/10 when
[1462] [1463] [1464] [1465] [1466] [1467]
Underfull \hbox (badness 2894) in paragraph at lines 12432--12436
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
[1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475] [1476] [1477] [1478]
Underfull \hbox (badness 4518) in paragraph at lines 13127--13132
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1479] [1480] [1481] [1482] [1483] [1484] [1485] [1486] [1487] [1488]
Underfull \hbox (badness 4518) in paragraph at lines 13774--13779
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1489] [1490] [1491] [1492] [1493] [1494] [1495] [1496] [1497] [1498] [1499]
[1500] [1501] [1502] [1503] [1504] [1505] [1506] [1507] [1508]
Underfull \hbox (badness 2503) in paragraph at lines 14975--14979
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1509] [1510] [1511] [1512] [1513] [1514] [1515] [1516]
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[]\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response 
\T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(, "offset") \T1
/ptm/m/n/10 and
[1517] [1518] [1519] [1520] [1521] [1522] [1523] [1524] [1525] [1526] [1527]
[1528] [1529] [1530] [1531] [1532] [1533] [1534] [1535] [1536] [1537] [1538]
[1539] [1540] [1541] [1542]
Underfull \hbox (badness 2359) in paragraph at lines 17108--17110
[]\T1/ptm/m/n/10 Douglas M. Bates and Saikat De-bRoy: David M. Gay for the For-
tran code used by
[1543] [1544]
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[1558]
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[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

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[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

Underfull \hbox (badness 1184) in paragraph at lines 18037--18041
\T1/ptm/m/n/10 value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + reltol
) \T1/ptm/m/n/10 at a step. De-faults to

Underfull \hbox (badness 2662) in paragraph at lines 18045--18049
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt
m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \
T1/ptm/m/n/10 meth-ods if
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[1563] [1564] [1565] [1566] [1567] [1568]
Underfull \hbox (badness 1337) in paragraph at lines 18661--18664
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
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[1580] [1581]
Underfull \hbox (badness 5563) in paragraph at lines 19391--19393
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , add to al-read
y ex-ist-ing plot. Only valid for

Underfull \hbox (badness 1194) in paragraph at lines 19394--19397
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
[1582] [1583] [1584] [1585] [1586] [1587]
Underfull \hbox (badness 2503) in paragraph at lines 19761--19764
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1588]
Underfull \hbox (badness 10000) in paragraph at lines 19788--19790
[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1
/ptm/m/n/10 or
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[1600] [1601] [1602] [1603] [1604]
Underfull \hbox (badness 10000) in paragraph at lines 20788--20794
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][
][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 ,
[1605] [1606] [1607] [1608] [1609] [1610] [1611] [1612] [1613] [1614] [1615]
[1616] [1617] [1618] [1619] [1620] [1621] [1622] [1623] [1624] [1625] [1626]
[1627]
Underfull \hbox (badness 1337) in paragraph at lines 22123--22129
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1628] [1629] [1630] [1631] [1632] [1633] [1634] [1635] [1636] [1637] [1638]
[1639]
Underfull \hbox (badness 10000) in paragraph at lines 22916--22919
[]\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by
[1640] [1641] [1642] [1643] [1644] [1645] [1646] [1647] [1648]
Underfull \hbox (badness 10000) in paragraph at lines 23493--23496
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run
med(x, k) \T1/ptm/m/n/10 sim-ply has
[1649]
Underfull \hbox (badness 3690) in paragraph at lines 23544--23548
[][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's
 end point rule and is called by de-fault from
[1650] [1651] [1652] [1653] [1654]
Underfull \hbox (badness 7667) in paragraph at lines 23811--23813
[]\T1/ptm/m/n/10 a nu-meric vec-tor or an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-je
ct which is co-ercible to one by
[1655] [1656] [1657]
Underfull \hbox (badness 3439) in paragraph at lines 24014--24020
[][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSasympO
rig[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSbiexp[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 SSfol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSfpl[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 SSgompertz[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 SSlogis[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSmicmen[][][]\T1/ptm/m/n/1
0 ,
[1658] [1659] [1660] [1661] [1662] [1663] [1664] [1665] [1666]
Underfull \hbox (badness 10000) in paragraph at lines 24562--24567
[]\T1/ptm/m/n/10 integer or [][]\T1/zi4/m/n/10 function[][][] \T1/ptm/m/n/10 gi
v-ing the num-ber of knots to use when
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[1678] [1679] [1680] [1681]
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[1683]
Underfull \hbox (badness 3514) in paragraph at lines 25578--25583
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1684]
Underfull \hbox (badness 3514) in paragraph at lines 25640--25645
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1685]
Underfull \hbox (badness 3514) in paragraph at lines 25697--25702
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1686]
Underfull \hbox (badness 3514) in paragraph at lines 25758--25764
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1687] [1688] [1689] [1690]
Underfull \hbox (badness 3514) in paragraph at lines 25971--25976
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion

Underfull \hbox (badness 3514) in paragraph at lines 26027--26032
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1691]
Underfull \hbox (badness 3514) in paragraph at lines 26084--26089
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1692]
Underfull \hbox (badness 3514) in paragraph at lines 26139--26144
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1693] [1694]
Underfull \hbox (badness 6691) in paragraph at lines 26208--26213
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p
tm/m/n/10 . It is the value of the ex-pres-sion
[1695] [1696] [1697] [1698] [1699] [1700] [1701] [1702]
Underfull \hbox (badness 10000) in paragraph at lines 26732--26735
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-

Underfull \hbox (badness 10000) in paragraph at lines 26732--26735
\T1/ptm/m/n/10 trac-tion, which should be odd. If \T1/zi4/m/n/10 NULL\T1/ptm/m/
n/10 , the de-fault,
[1703] [1704] [1705] [1706] [1707] [1708] [1709] [1710] [1711] [1712]
Underfull \hbox (badness 5431) in paragraph at lines 27338--27340
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1713] [1714] [1715] [1716]
Underfull \hbox (badness 5431) in paragraph at lines 27548--27551
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1717] [1718] [1719] [1720] [1721]
Underfull \hbox (badness 1337) in paragraph at lines 27860--27864
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1722] [1723]
Underfull \hbox (badness 10000) in paragraph at lines 27977--27980
[]\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/
10 ; cur-rently ex-cept for \T1/zi4/m/n/10 rt()\T1/ptm/m/n/10 , only for
[1724] [1725] [1726]
Underfull \hbox (badness 1616) in paragraph at lines 28160--28163
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
[1727] [1728] [1729] [1730] [1731] [1732] [1733] [1734] [1735] [1736] [1737]
[1738] [1739] [1740] [1741] [1742] [1743] [1744] [1745]
Underfull \hbox (badness 10000) in paragraph at lines 29287--29291
[]\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z
i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect
[1746] [1747] [1748]
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[1750] [1751]
Underfull \hbox (badness 1337) in paragraph at lines 29651--29655
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1752] [1753] [1754] [1755] [1756] [1757] [1758] [1759]
Underfull \hbox (badness 1337) in paragraph at lines 30135--30139
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1760]
Underfull \hbox (badness 5161) in paragraph at lines 30228--30230
[]\T1/ptm/m/n/10 an es-ti-mate of the lo-ca-tion pa-ram-e-ter. (Only present if
 ar-gu-ment
[1761] [1762] [1763] [1764] [1765] [1766]
Underfull \hbox (badness 10000) in paragraph at lines 30592--30597
[]\T1/ptm/m/n/10 There is a \T1/zi4/m/n/10 summary \T1/ptm/m/n/10 method for co
n-tin-gency ta-ble ob-jects cre-ated by \T1/zi4/m/n/10 table \T1/ptm/m/n/10 or
[1767] [1768] [1769]) (./stats4-pkg.tex [1770]
Chapter 11.
[1771] [1772] [1773] [1774] [1775] [1776]pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup
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<to be read again> 
                   \relax 
l.407 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                   [1777] [1778] [1779]
[1780]) (./tcltk-pkg.tex
Chapter 12.
[1781] [1782] [1783] [1784] [1785] [1786] [1787]
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Underfull \vbox (badness 10000) has occurred while \output is active [1789]
Underfull \hbox (badness 1546) in paragraph at lines 664--671
[]\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing
 any Tk or Tcl com-mand by sim-ply run-ning
[1790] [1791] [1792] [1793] [1794] [1795] [1796] [1797] [1798] [1799] [1800]
Underfull \hbox (badness 3375) in paragraph at lines 1407--1410
[][][]\T1/zi4/m/n/10 select.list[][][] \T1/ptm/m/n/10 (a text ver-sion ex-cept 
on Win-dows and the OS X GUI), [][]\T1/zi4/m/n/10 menu[][][] \T1/ptm/m/n/10 (wh
ose
[1801]) (./tools-pkg.tex [1802]
Chapter 13.
[1803]

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[1804]
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[]\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b
e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
[1805] [1806]
Underfull \hbox (badness 1308) in paragraph at lines 285--298
[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types

Underfull \hbox (badness 4967) in paragraph at lines 285--298
\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe
ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

Underfull \hbox (badness 10000) in paragraph at lines 285--298
\T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee
dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 formatMastersthesis\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 285--298
\T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm
/m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma
tTechreport \T1/ptm/m/n/10 and
[1807] [1808]
Underfull \hbox (badness 3039) in paragraph at lines 389--391
[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine 
to use. Over-rides any
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Underfull \hbox (badness 1635) in paragraph at lines 1050--1052
[]\T1/ptm/m/n/10 Delete files in the tem-po-rary di-rec-tory? This op-tion is i
g-nored when
[1820]
Underfull \hbox (badness 4441) in paragraph at lines 1126--1136
\T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe
n-den-cies (de-
[1821]
Underfull \hbox (badness 1014) in paragraph at lines 1148--1150
[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

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[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a 
pre-vi-ous

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[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing


Overfull \hbox (15.52087pt too wide) in paragraph at lines 1185--1188
\T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z
i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 ,
[1822] [1823] [1824]
Underfull \hbox (badness 10000) in paragraph at lines 1348--1350
[]\T1/ptm/m/n/10 Re-save PDF files (es-pe-cially vi-gnettes) more com-pactly. S
up-port func-tion for
[1825] [1826] [1827]
Underfull \hbox (badness 7981) in paragraph at lines 1518--1522
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of

Underfull \hbox (badness 1082) in paragraph at lines 1524--1526
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see
[1828] [1829] [1830] [1831]pdfTeX warning (ext4): destination with the same ide
ntifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1721 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
                                                   [1832] [1833]
Underfull \hbox (badness 5726) in paragraph at lines 1847--1852
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/n/10 TRUE
\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/n/10 De
pendsList \T1/ptm/m/n/10 ob-ject

Underfull \hbox (badness 7221) in paragraph at lines 1847--1852
\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
[1834] [1835] [1836] [1837] [1838] [1839] [1840] [1841]
Underfull \hbox (badness 7981) in paragraph at lines 2323--2329
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of
[1842] [1843] [1844] [1845]

LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
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[1846] [1847] [1848] [1849]
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[]\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t
or of links, as re-turned by
[1850] [1851] [1852] [1853] [1854] [1855] [1856] [1857] [1858] [1859] [1860]
Underfull \hbox (badness 10000) in paragraph at lines 3539--3541
[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
[1861] [1862] [1863] [1864] [1865] [1866]
Underfull \hbox (badness 1838) in paragraph at lines 3913--3919
[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The

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\T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file
[1867] [1868]
Underfull \hbox (badness 5726) in paragraph at lines 3993--3998
[]\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/sl/10 TR
UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/sl/10
 DependsList \T1/ptm/m/n/10 ob-ject

Underfull \hbox (badness 7221) in paragraph at lines 3993--3998
\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
[1869] [1870]
Underfull \hbox (badness 1688) in paragraph at lines 4136--4148
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to be used in the `\T
1/zi4/m/sl/10 PACKAGES\T1/ptm/m/n/10 ' and
[1871] [1872] [1873] [1874]) (./utils-pkg.tex
Chapter 14.
[1875]
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ',
[1876] [1877]
Underfull \hbox (badness 1454) in paragraph at lines 197--200
[]\T1/ptm/m/n/10 logical in-di-cat-ing if the search should be case-insensitive
, \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 by de-

Underfull \hbox (badness 1540) in paragraph at lines 213--216
[]\T1/zi4/m/sl/10 find \T1/ptm/m/n/10 is a dif-fer-ent user in-ter-face for the
 same task as \T1/zi4/m/sl/10 apropos\T1/ptm/m/n/10 . How-ever, by de-fault
[1878] [1879] [1880] [1881] [1882] [1883]
Underfull \hbox (badness 10000) in paragraph at lines 543--549
[]\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1
0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3343) in paragraph at lines 543--549
\T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel
l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the
[1884]
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[]\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to
 se-lect which of the pack-ages on the repos-i-to-

Underfull \hbox (badness 4229) in paragraph at lines 656--662
\T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi
4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as
[1885]
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table[][][]\T1/ptm/m/n/10 ;
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[][][]$\T1/zi4/m/sl/10 http : / / en . wikipedia . org / wiki / Ctags$[][]\T1/p
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(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd) [1] [2] [3]
[4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19]
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Chapter 1.

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[]\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h
igh-est, for
[1] [2]
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[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1
/ptm/m/n/10 such that \T1/zi4/m/n/10 1 - x != 1\T1/ptm/m/n/10 .

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\T1/ptm/m/n/10 It equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1
/ptm/m/n/10 if

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\T1/zi4/m/n/10 double.base \T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.roundin
g \T1/ptm/m/n/10 is 0; oth-er-wise, it is

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[]\T1/ptm/m/n/10 the largest nor-mal-ized floating-point num-ber. Typ-i-cally, 
it is equal to
[3] [4] [5]
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[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/
10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues
[6]
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[]\T1/ptm/m/n/10 logical: should \T1/zi4/m/n/10 minlength \T1/ptm/m/n/10 be ob-
served strictly? Note that set-ting
[7] [8]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ',
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[]\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec-
tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis
t of length
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[]\T1/zi4/m/n/10 %% \T1/ptm/m/n/10 in-di-cates \T1/zi4/m/n/10 x mod y \T1/ptm/m
/n/10 and \T1/zi4/m/n/10 %/% \T1/ptm/m/n/10 in-di-cates in-te-ger di-vi-sion. I
t is guar-an-teed that
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 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 
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[]\T1/ptm/m/n/10 a date-time ob-ject, or some-thing which can be co-erced by
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[48] [49] [50] [51] [52] [53] [54] [55]
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[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
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[71] [72] [73] [74]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
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[90] [91] [92] [93]
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[]\T1/ptm/m/n/10 New restarts for \T1/zi4/m/n/10 withRestarts \T1/ptm/m/n/10 ca
n be spec-i-fied in sev-eral ways. The sim-plest is in
[94] [95] [96]
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[]\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa
ult", "internal", "wininet", "libcurl")\T1/ptm/m/n/10 :
[97] [98]
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[]\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo
st gen-eral form (from RFC1738) is
[99]
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[]\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \
T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re-
move a

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\T1/ptm/m/n/10 Byte Or-der Mark if present (which it of-ten is for files and we
b-pages gen-er-ated by Mi-

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\T1/ptm/m/n/10 crosoft ap-pli-ca-tions). If a BOM is re-quired (it is not rec-o
m-mended) when writ-ing it
[101]
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\T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z
i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as
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[]\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h
igh-est, for
[113]
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[]\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0, \T1/zi4/m/n/10 
getOption("OutDec") \T1/ptm/m/n/10 is con-sulted when la-bels are con-structed 
for

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[][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c
ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][
]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T
1/ptm/m/n/10 ,
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[]\T1/zi4/m/n/10 data.frame \T1/ptm/m/n/10 con-verts each of its ar-gu-ments to
 a data frame by call-ing
[118]
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[][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 
, [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[]
[][] \T1/ptm/m/n/10 (for the col-umn names),

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[][]\T1/zi4/m/n/10 [.data.frame[][][] \T1/ptm/m/n/10 for sub-set-ting meth-ods,
 [][]\T1/zi4/m/n/10 Math.data.frame[][][] \T1/ptm/m/n/10 etc, about \T1/ptm/m/i
t/10 Group \T1/ptm/m/n/10 meth-ods for
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[143]
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[]\T1/ptm/m/n/10 Subtraction of date-time ob-jects gives an ob-ject of this cla
ss, by call-ing \T1/zi4/m/n/10 difftime \T1/ptm/m/n/10 with
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[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 dontCheck \T1/ptm/m/n/10 func-tion is the s
ame as [][]\T1/zi4/m/n/10 identity[][][]\T1/ptm/m/n/10 , but is in-ter-preted b
y \T1/zi4/m/n/10 R CMD check

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\T1/ptm/m/n/10 code anal-y-sis as a di-rec-tive to sup-press check-ing of \T1/z
i4/m/n/10 x\T1/ptm/m/n/10 . Cur-rently this is only used by
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[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / IEEE _ 754-[]198
5$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wi
ki / IEEE _
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if du-pli-ca-tion should be con-sid-ered
 from the re-verse
[157]
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[]\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len
t method def-i-ni-tions for

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[]\T1/ptm/m/n/10 Except for fac-tors, log-i-cal and raw vec-tors the de-fault \
T1/zi4/m/n/10 nmax = NA \T1/ptm/m/n/10 is equiv-a-lent to
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[]\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been
 passed as an ar-gu-ment

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\T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller'
s en-vi-ron-ment, i.e., one needs
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[]\T1/ptm/m/n/10 Both \T1/zi4/m/n/10 $ \T1/ptm/m/n/10 and \T1/zi4/m/n/10 [[ \T1
/ptm/m/n/10 can be ap-plied to en-vi-ron-ments. Only char-ac-ter in-dices are a
l-lowed

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\T1/ptm/m/n/10 and no par-tial match-ing is done. The se-man-tics of these op-e
r-a-tions are those of
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[]\T1/ptm/m/n/10 For \T1/zi4/m/n/10 iconv \T1/ptm/m/n/10 this will give the im-
ple-men-ta-tion as well as the ver-sion, for ex-am-ple
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[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
[198]
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[][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo
lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi
le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/
10 , and
[199]
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[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m
/n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with
[200] [201]
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[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/
zi4/m/n/10 file.copy \T1/ptm/m/n/10 and
[202]
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[][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac
cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [
][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/
zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 ,
[203]
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[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik
i /
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[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
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[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
\T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for
[219]
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[]\T1/ptm/m/n/10 If you set \T1/zi4/m/n/10 format \T1/ptm/m/n/10 it over-rides 
the set-ting of \T1/zi4/m/n/10 mode\T1/ptm/m/n/10 , so

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[]\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b
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[220]
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[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in
 \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt
m/m/n/10 3.2.0: for use

Underfull \hbox (badness 4156) in paragraph at lines 14252--14256
\T1/ptm/m/n/10 within [][]\T1/zi4/m/n/10 print[][][] \T1/ptm/m/n/10 meth-ods in
 pack-ages which might be used with ear-lier ver-sions: use
[221]
Underfull \vbox (badness 3803) has occurred while \output is active [222]
[223] [224] [225] [226] [227] [228] [229]
Underfull \hbox (badness 2452) in paragraph at lines 14832--14836
[]\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m
ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-

Underfull \hbox (badness 1147) in paragraph at lines 14832--14836
\T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to
 the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_
WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and
[230] [231] [232]
Underfull \hbox (badness 1092) in paragraph at lines 15005--15010
[][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t
he DLL has been loaded us-ing
[233] [234] [235] [236]
Underfull \hbox (badness 6741) in paragraph at lines 15253--15257
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \
T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10
 ,
[237] [238] [239] [240]
Underfull \hbox (badness 1867) in paragraph at lines 15559--15566
[]\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][]
[] (or char-ac-ter string for
[241] [242] [243] [244]
Underfull \vbox (badness 10000) has occurred while \output is active [245]
[246]
Underfull \hbox (badness 3679) in paragraph at lines 15939--15941
[]\T1/ptm/m/n/10 The TRE li-brary of Ville Lau-rikari ([][]$\T1/zi4/m/n/10 http
 : / / laurikari . net / tre/$[][]\T1/ptm/m/n/10 ) is used ex-cept for
[247] [248] [249] [250] [251] [252] [253]
Underfull \hbox (badness 1478) in paragraph at lines 16419--16422
[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
[254] [255] [256] [257]
Underfull \hbox (badness 10000) in paragraph at lines 16670--16672
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 http : / / www
 . unicode . org / reports / tr35 /
[258] [259] [260] [261] [262] [263] [264] [265] [266]
Underfull \hbox (badness 1442) in paragraph at lines 17233--17235
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see
[267]
Underfull \hbox (badness 2452) in paragraph at lines 17325--17341
[][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c
omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 ,
 [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi
cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\
T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 ,
[268] [269] [270] [271] [272] [273] [274]
Underfull \hbox (badness 1248) in paragraph at lines 17733--17736
[]\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type
s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n
/10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/
m/n/10 ,
[275] [276] [277] [278]
Underfull \hbox (badness 4739) in paragraph at lines 17989--17991
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
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[291] [292] [293] [294]
Underfull \hbox (badness 1360) in paragraph at lines 18937--18942
\T1/zi4/m/n/10 "none"\T1/ptm/m/n/10 . It is in-tended for the ver-sion of OpenS
SL used, but not all

Underfull \hbox (badness 10000) in paragraph at lines 18960--18966
[][][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / sslcerts . html$[][]
 \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs /

Underfull \hbox (badness 1127) in paragraph at lines 18960--18966
\T1/zi4/m/n/10 ssl-[]compared . html$[][] \T1/ptm/m/n/10 for more de-tails on S
SL ver-sions. Nor-mally \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 used with \T1/phv
/m/n/10 R
[295]
Underfull \hbox (badness 10000) in paragraph at lines 19033--19037
[]\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an
d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory

Underfull \hbox (badness 2460) in paragraph at lines 19033--19037
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/
10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T
1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10
 '
[296] [297]
Underfull \hbox (badness 1509) in paragraph at lines 19168--19175
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 library \T1/ptm/m/n/10 is called with no \T1
/zi4/m/n/10 package \T1/ptm/m/n/10 or \T1/zi4/m/n/10 help \T1/ptm/m/n/10 ar-gu-
ment, it lists all avail-able pack-ages

Underfull \hbox (badness 1354) in paragraph at lines 19168--19175
\T1/ptm/m/n/10 Use \T1/zi4/m/n/10 .packages(all = TRUE) \T1/ptm/m/n/10 to ob-ta
in just the names of all avail-able pack-ages, and

Underfull \hbox (badness 1014) in paragraph at lines 19184--19189
[]\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi
s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1
0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if
[298] [299] [300] [301] [302] [303] [304] [305] [306] [307] [308] [309]
Underfull \hbox (badness 1264) in paragraph at lines 19914--19919
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
[310] [311] [312] [313] [314] [315] [316] [317] [318] [319] [320]
Underfull \hbox (badness 10000) in paragraph at lines 20668--20670
[]\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n
/10 has the prop-erty that
[321] [322] [323] [324] [325] [326] [327] [328] [329] [330] [331] [332]
[333] [334] [335] [336]
Underfull \hbox (badness 1655) in paragraph at lines 21666--21672
[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Data _ compressi
on$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-sion,
[337] [338] [339]
Underfull \hbox (badness 1484) in paragraph at lines 21827--21835
[]\T1/ptm/m/n/10 The address-space limit is 2Gb un-der 32-bit Win-dows un-less 
the OS's de-fault has been
[340] [341] [342] [343]
Underfull \hbox (badness 2790) in paragraph at lines 22098--22101
[]\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s
ages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 22098--22101
\T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m
es-sages, so can be sup-pressed by
[344] [345] [346] [347]
Underfull \hbox (badness 1194) in paragraph at lines 22379--22382
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha
n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 .
 It calls
[348] [349] [350] [351]
Underfull \hbox (badness 10000) in paragraph at lines 22585--22591
[]\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 
, \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond-
ing

Underfull \hbox (badness 5862) in paragraph at lines 22585--22591
\T1/ptm/m/n/10 list, i.e., \T1/zi4/m/n/10 names(as.list(env, all.names = TRUE))
 \T1/ptm/m/n/10 which are also given by

Underfull \hbox (badness 10000) in paragraph at lines 22595--22598
[]\T1/ptm/m/n/10 It is pos-si-ble to up-date just part of the names at-tribute 
via the gen-eral rules:

Underfull \hbox (badness 10000) in paragraph at lines 22595--22598
\T1/ptm/m/n/10 see the ex-am-ples. This works be-cause the ex-pres-sion there i
s eval-u-ated as
[352] [353] [354] [355] [356] [357] [358] [359] [360] [361] [362] [363]
[364]
Underfull \hbox (badness 10000) in paragraph at lines 23487--23489
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m
ore ef-fi-cient than
[365] [366] [367] [368]
Underfull \hbox (badness 1199) in paragraph at lines 23701--23707
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 is.numeric \T1/ptm/m/n/
10 re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 if its ar-gu-ment is of [][]mode
[][][] \T1/zi4/m/n/10 "numeric"

Underfull \hbox (badness 2027) in paragraph at lines 23701--23707
\T1/ptm/m/n/10 ([][]type[][][] \T1/zi4/m/n/10 "double" \T1/ptm/m/n/10 or type \
T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 ) and not a fac-tor, and \T1/zi4/m/n/10 F
ALSE \T1/ptm/m/n/10 oth-er-wise. That is,
[369] [370] [371] [372] [373] [374] [375] [376]
Underfull \hbox (badness 1038) in paragraph at lines 24266--24275
[]\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/
10 R \T1/ptm/m/n/10 starts up. Ini-tially

Underfull \hbox (badness 1881) in paragraph at lines 24276--24279
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

Underfull \hbox (badness 6220) in paragraph at lines 24295--24297
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see

[377]
Underfull \hbox (badness 10000) in paragraph at lines 24367--24377
[]\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/zi4/m
/n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to

Underfull \hbox (badness 2142) in paragraph at lines 24378--24384
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr
ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 1968) in paragraph at lines 24391--24396
[]\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p
tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 10000) in paragraph at lines 24401--24403
[]\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v
alue
[378] [379] [380]
Underfull \hbox (badness 10000) in paragraph at lines 24645--24651
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/
n/10 setRepositories[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 24645--24651
\T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "http://bioconductor.org"\T1/p
tm/m/n/10 ' or the Eu-ro-pean mir-ror

Underfull \hbox (badness 10000) in paragraph at lines 24645--24651
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 "http://bioconductor.statistik.tu-dortmund.de"\T
1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 10000) in paragraph at lines 24658--24661
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][
][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10
 and

Underfull \hbox (badness 2689) in paragraph at lines 24682--24684
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see
[381]
Underfull \hbox (badness 10000) in paragraph at lines 24714--24719
[]\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/
10 (and in-di-rectly

Underfull \hbox (badness 1629) in paragraph at lines 24720--24731
\T1/ptm/m/n/10 si-ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi
4/m/n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use an
d

Underfull \hbox (badness 7203) in paragraph at lines 24732--24735
[]\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos
t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/
n/10 and

Underfull \hbox (badness 4084) in paragraph at lines 24742--24754
\T1/ptm/m/n/10 Pos-si-ble val-ues are \T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (t
he de-fault ex-cept un-der a CRAN OS X build),

Underfull \hbox (badness 10000) in paragraph at lines 24742--24754
\T1/zi4/m/n/10 "mac.binary."\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "mac.binary.maveric
ks" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "both" \T1/ptm/m/n/10 (the de-fault for C
RAN

Underfull \hbox (badness 7397) in paragraph at lines 24742--24754
\T1/ptm/m/n/10 OS X builds). Win-dows uses \T1/zi4/m/n/10 "win.binary"\T1/ptm/m
/n/10 . (\T1/zi4/m/n/10 "mac.binary.leopard" \T1/ptm/m/n/10 and

Underfull \hbox (badness 10000) in paragraph at lines 24756--24763
[]\T1/ptm/m/n/10 URLs of the repos-i-to-ries for use by [][]\T1/zi4/m/n/10 upda
te.packages[][][]\T1/ptm/m/n/10 . De-faults to

Underfull \hbox (badness 10000) in paragraph at lines 24756--24763
\T1/zi4/m/n/10 c(CRAN="@CRAN@")\T1/ptm/m/n/10 , a value that causes some util-i
-ties to prompt for a

Underfull \hbox (badness 6380) in paragraph at lines 24756--24763
\T1/ptm/m/n/10 CRAN mir-ror. To avoid this do set the CRAN mir-ror, by some-thi
ng like

Underfull \hbox (badness 1082) in paragraph at lines 24756--24763
\T1/zi4/m/n/10 local({r <- getOption("repos"); r["CRAN"] <- "http://my.local.cr
an";
[382] [383] [384] [385] [386]
Underfull \hbox (badness 10000) in paragraph at lines 25077--25081
[]\T1/ptm/m/n/10 The outer prod-uct of the ar-rays \T1/zi4/m/n/10 X \T1/ptm/m/n
/10 and \T1/zi4/m/n/10 Y \T1/ptm/m/n/10 is the ar-ray \T1/zi4/m/n/10 A \T1/ptm/
m/n/10 with di-men-sion

Underfull \hbox (badness 10000) in paragraph at lines 25077--25081
\T1/zi4/m/n/10 c(dim(X), dim(Y)) \T1/ptm/m/n/10 where el-e-ment \T1/zi4/m/n/10 
A[c(arrayindex.x, arrayindex.y)]
[387] [388] [389] [390] [391]
Underfull \hbox (badness 1735) in paragraph at lines 25395--25399
[]\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 paste() \T1/ptm/m/n/10 co-erces [][]\
T1/zi4/m/n/10 NA_character_[][][]\T1/ptm/m/n/10 , the char-ac-ter miss-ing valu
e, to \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 which
[392] [393] [394] [395] [396] [397] [398] [399] [400] [401]
Underfull \hbox (badness 2726) in paragraph at lines 25956--25959
[]\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di
-cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put,
 see
[402] [403] [404] [405] [406] [407] [408] [409] [410] [411] [412] [413]
[414]
Underfull \hbox (badness 1052) in paragraph at lines 26775--26780
[]\T1/zi4/m/n/10 qr.X \T1/ptm/m/n/10 re-turns $\OML/cmm/b/it/10 X$\T1/ptm/m/n/1
0 , the orig-i-nal ma-trix from which the qr ob-ject was con-structed, pro-vide
d
[415] [416] [417] [418] [419] [420] [421] [422] [423] [424] [425]
Underfull \hbox (badness 1533) in paragraph at lines 27503--27506
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[426] [427]
Underfull \hbox (badness 1163) in paragraph at lines 27665--27675
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\
T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in
[428] [429] [430] [431] [432] [433] [434] [435] [436] [437] [438] [439]
[440] [441] [442] [443] [444] [445] [446] [447] [448] [449] [450] [451]
Underfull \hbox (badness 10000) in paragraph at lines 29159--29163
[]\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n
/10 sup-port `named cap-ture'. If groups are named, e.g.,

Underfull \hbox (badness 1221) in paragraph at lines 29159--29163
\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t
he matches are also re-turned by name.

Underfull \hbox (badness 6188) in paragraph at lines 29181--29183
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p
ubs . opengroup . org / onlinepubs / 9699919799 /
[452] [453] [454] [455] [456] [457] [458] [459] [460]
Underfull \hbox (badness 1655) in paragraph at lines 29726--29728
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm
/m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for
[461] [462] [463] [464] [465] [466] [467] [468] [469] [470] [471]
Underfull \hbox (badness 10000) in paragraph at lines 30394--30398
[]\T1/zi4/m/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my c
ur-rent workspace', i.e.,
[472] [473] [474]
Underfull \hbox (badness 2302) in paragraph at lines 30634--30641
[]\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d
e-fined as $[]$,

Underfull \hbox (badness 2837) in paragraph at lines 30634--30641
\T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no
n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non
-missing

Underfull \hbox (badness 2980) in paragraph at lines 30634--30641
\T1/ptm/m/n/10 val-ues. In the case \T1/zi4/m/n/10 center = TRUE\T1/ptm/m/n/10 
, this is the same as the stan-dard de-vi-a-tion,

Underfull \hbox (badness 2181) in paragraph at lines 30634--30641
\T1/ptm/m/n/10 but in gen-eral it is not. (To scale by the stan-dard de-vi-a-ti
ons with-out cen-ter-ing, use
[475] [476] [477]
Underfull \hbox (badness 2261) in paragraph at lines 30788--30793
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i
t ap-plies to all fields; oth-er-wise, if

Underfull \hbox (badness 10000) in paragraph at lines 30815--30821
[]\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac-
ters
[478]
Underfull \hbox (badness 10000) in paragraph at lines 30891--30896
[]\T1/ptm/m/n/10 Note that since \T1/zi4/m/n/10 sep \T1/ptm/m/n/10 is a sep-a-r
a-tor and not a ter-mi-na-tor, read-ing a file by
[479] [480] [481] [482] [483] [484] [485] [486] [487] [488] [489] [490]
[491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501] [502]
[503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514]
[515] [516] [517] [518] [519] [520] [521]
Underfull \hbox (badness 1072) in paragraph at lines 33675--33679
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

Underfull \hbox (badness 10000) in paragraph at lines 33680--33684
[]\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/
10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 -
-no-init-file\T1/ptm/m/n/10 ',
[522]
Underfull \hbox (badness 10000) in paragraph at lines 33708--33714
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

Underfull \hbox (badness 10000) in paragraph at lines 33708--33714
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,

Underfull \hbox (badness 1320) in paragraph at lines 33708--33714
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in

Underfull \hbox (badness 3343) in paragraph at lines 33721--33728
\T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment 
vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 33721--33728
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 33721--33728
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[523] [524] [525] [526] [527]
Underfull \hbox (badness 10000) in paragraph at lines 34012--34018
[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form
at \T1/ptm/m/n/10 meth-ods is

Underfull \hbox (badness 1152) in paragraph at lines 34012--34018
\T1/zi4/m/n/10 "%Y-%m-%d %H:%M:%S" \T1/ptm/m/n/10 if any el-e-ment has a time c
om-po-nent which is
[528] [529] [530] [531] [532] [533] [534] [535] [536] [537] [538] [539]
[540] [541] [542] [543] [544] [545] [546] [547] [548] [549] [550] [551]
[552] [553] [554] [555]
Underfull \hbox (badness 3333) in paragraph at lines 35794--35799
[]\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi
s may need to be matched ex-plic-itly: for ex-am-ple
[556] [557] [558] [559] [560] [561] [562] [563] [564] [565]
Underfull \hbox (badness 1472) in paragraph at lines 36401--36404
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee
p their source in-clud-ing com-ments, see
[566] [567] [568] [569] [570] [571] [572] [573] [574] [575]
Underfull \hbox (badness 2671) in paragraph at lines 37063--37066
[]\T1/ptm/m/n/10 levels to re-move for all fac-tors in \T1/zi4/m/n/10 ...\T1/pt
m/m/n/10 . If set to \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 , it im-plies
[576] [577] [578] [579] [580] [581]
Underfull \hbox (badness 10000) in paragraph at lines 37467--37470
[][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$http : / / developer . r-[]project . org /
[582] [583]
Underfull \hbox (badness 10000) in paragraph at lines 37588--37592
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 getTaskCallbackNames
[][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer .
[584]
Underfull \hbox (badness 10000) in paragraph at lines 37650--37654
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[
][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer .
[585] [586] [587] [588] [589] [590] [591] [592] [593] [594] [595] [596]
[597] [598] [599] [600] [601] [602] [603] [604]
Underfull \hbox (badness 1990) in paragraph at lines 38945--38953
[]\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e
r-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 38945--38953
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less
[605] [606] [607] [608]
Underfull \hbox (badness 1515) in paragraph at lines 39217--39222
[]\T1/ptm/m/n/10 On most plat-forms `file' in-cludes sym-bolic links, fi-fos an
d sock-ets. Prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 2.15.0
[609] [610] [611] [612]
Underfull \hbox (badness 1917) in paragraph at lines 39447--39454
[]\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/
ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute
[613] [614] [615] [616] [617] [618] [619] [620] [621]
Underfull \hbox (badness 3668) in paragraph at lines 40023--40025
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[622]
Underfull \hbox (badness 2401) in paragraph at lines 40128--40132
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war
n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[623] [624] [625]
Underfull \hbox (badness 2111) in paragraph at lines 40297--40302
\T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n
ot empty, these are used as col-umn names.

Underfull \hbox (badness 6542) in paragraph at lines 40313--40318
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m
/n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has
 a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is
[626] [627] [628] [629] [630] [631] [632]
Underfull \hbox (badness 10000) in paragraph at lines 40747--40752
[]\T1/ptm/m/n/10 This is a spe-cial case of rank-ing, but as a less gen-eral fu
nc-tion than [][]\T1/zi4/m/n/10 rank[][][]

Underfull \hbox (badness 10000) in paragraph at lines 40747--40752
\T1/ptm/m/n/10 is more suit-able to be made generic. The de-fault method is sim
-i-lar to
[633] [634]
Underfull \hbox (badness 5417) in paragraph at lines 40839--40843
[]\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl
y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[635]
Underfull \hbox (badness 10000) in paragraph at lines 40900--40904
[]\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard
' reg-exps, in-clud-ing el-e-ments named
[636]) (./compiler-pkg.tex
Chapter 2.
[637] [638] [639] [640]) (./datasets-pkg.tex
Chapter 3.

Underfull \hbox (badness 10000) in paragraph at lines 12--14
[]\T1/ptm/m/n/10 This pack-age con-tains a va-ri-ety of datasets. For a com-ple
te list, use
[641] [642] [643] [644] [645] [646] [647] [648] [649] [650] [651] [652]
[653] [654] [655] [656] [657] [658] [659] [660] [661] [662] [663] [664]
[665] [666] [667] [668] [669] [670] [671] [672] [673] [674] [675] [676]
[677] [678] [679] [680] [681] [682] [683] [684] [685] [686] [687]
Underfull \vbox (badness 1515) has occurred while \output is active [688]
[689] [690] [691] [692] [693] [694] [695] [696] [697] [698] [699] [700]
[701] [702] [703] [704] [705] [706] [707]
Underfull \hbox (badness 6658) in paragraph at lines 3933--3935
[]\T1/ptm/m/n/10 For some pho-tos of Methuse-lah Walk see [][]$\T1/zi4/m/n/10 h
ttp : / / www . ltrr . arizona . edu / ~hallman /
[708]
Underfull \vbox (badness 10000) has occurred while \output is active [709]
[710] [711] [712]
Underfull \vbox (badness 10000) has occurred while \output is active [713]
Underfull \vbox (badness 10000) has occurred while \output is active [714]
[715] [716] [717] [718] [719] [720] [721]) (./grDevices-pkg.tex [722]
Chapter 4.
[723] [724] [725] [726] [727] [728] [729] [730] [731] [732] [733] [734]
[735] [736] [737] [738] [739]
Underfull \hbox (badness 5175) in paragraph at lines 1066--1068
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
[740] [741] [742] [743]
Underfull \hbox (badness 1852) in paragraph at lines 1263--1266
[]\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col-
ors that will be used in plot-ting, call-ing
[744] [745] [746]
Underfull \hbox (badness 1490) in paragraph at lines 1469--1474
\T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\
T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/
10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and
[747]
Underfull \hbox (badness 2698) in paragraph at lines 1523--1526
[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 if the de-vice does not sup-port cap-ture,
 oth-er-wise a ma-trix of color names (for
[748]
Underfull \hbox (badness 10000) in paragraph at lines 1592--1596
[]\T1/ptm/m/n/10 logical; if \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , the func-tion 
also re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 when
[749] [750] [751] [752]
Underfull \hbox (badness 1325) in paragraph at lines 1875--1885
\T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 ,
 \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/
10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1
/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 ,
[753] [754]
Underfull \hbox (badness 10000) in paragraph at lines 1980--1982
[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
[755] [756] [757]
Underfull \hbox (badness 6758) in paragraph at lines 2141--2144
[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
[758] [759] [760] [761] [762] [763] [764] [765] [766]
Underfull \hbox (badness 10000) in paragraph at lines 2707--2708

[767] [768] [769] [770] [771] [772] [773]
Underfull \hbox (badness 1152) in paragraph at lines 3145--3147
[]\T1/ptm/m/n/10 A length two in-te-ger vec-tor \T1/zi4/m/n/10 nr, nc \T1/ptm/m
/n/10 giv-ing the num-ber of rows and columns, ful-fill-ing
[774] [775] [776] [777] [778]
Underfull \hbox (badness 2856) in paragraph at lines 3465--3468
[]\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv
e a C in-te-ger for-mat such as

Underfull \hbox (badness 2662) in paragraph at lines 3479--3481
[]\T1/ptm/m/n/10 title string to em-bed as the `\T1/zi4/m/n/10 /Title\T1/ptm/m/
n/10 ' field in the file. De-faults to
[779] [780]
Underfull \hbox (badness 1173) in paragraph at lines 3595--3605
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 paper \T1/ptm/m/n/10 ar-gu-ment sets the `\
T1/zi4/m/n/10 /MediaBox\T1/ptm/m/n/10 ' en-try in the file, which de-faults to 
\T1/zi4/m/n/10 width \T1/ptm/m/n/10 by
[781] [782] [783] [784] [785] [786] [787] [788] [789] [790] [791]
Underfull \hbox (badness 1067) in paragraph at lines 4302--4309
\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-
[792] [793]
Underfull \hbox (badness 5231) in paragraph at lines 4463--4465
[]\T1/ptm/m/n/10 The TIFF spec-i-fi-ca-tion, in-clud-ing ex-ten-sions, at [][]$
\T1/zi4/m/n/10 http : / / partners . adobe . com / public /
[794]
Underfull \hbox (badness 1789) in paragraph at lines 4540--4542
[]\T1/ptm/m/n/10 title string to em-bed as the \T1/zi4/m/n/10 Title \T1/ptm/m/n
/10 com-ment in the file. De-faults to
[795]
Underfull \hbox (badness 1377) in paragraph at lines 4590--4595
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
[796]
Underfull \hbox (badness 2671) in paragraph at lines 4617--4625
\T1/ptm/m/n/10 For use in this way you will prob-a-bly want to use [][]\T1/zi4/
m/n/10 setEPS[][][]() \T1/ptm/m/n/10 to set the de-faults as

Underfull \hbox (badness 1418) in paragraph at lines 4666--4673
\T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4
/m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/
zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm
/m/n/10 ,

Underfull \hbox (badness 2443) in paragraph at lines 4674--4683
\T1/ptm/m/n/10 PostScript de-vice is us-ing URW fonts, you will ob-tain ac-cess
 to more char-ac-ters and

Underfull \hbox (badness 2653) in paragraph at lines 4674--4683
\T1/ptm/m/n/10 more ap-pro-pri-ate met-rics by us-ing these names. To make thes
e eas-ier to re-mem-ber,

Underfull \hbox (badness 1755) in paragraph at lines 4684--4686
[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East 
Asian lan-guages -- see
[797] [798]
Underfull \hbox (badness 1057) in paragraph at lines 4795--4800
[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \
T1/zi4/m/n/10 "rgb"\T1/ptm/m/n/10 ) (which is RGB+gray) and
[799]
Underfull \hbox (badness 7344) in paragraph at lines 4855--4857
[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
[800] [801]
Underfull \hbox (badness 2035) in paragraph at lines 4979--4988
[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

Underfull \hbox (badness 10000) in paragraph at lines 4979--4988
\T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/
n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1
0 ,

Underfull \hbox (badness 10000) in paragraph at lines 4979--4988
\T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino"
 \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG
othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 ,
[802]
Underfull \hbox (badness 10000) in paragraph at lines 5048--5055
[]\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4
/m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu /

Underfull \hbox (badness 2189) in paragraph at lines 5048--5055
\T1/zi4/m/n/10 chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Lunde's CJK
V re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly .
[803] [804] [805]
Underfull \hbox (badness 1546) in paragraph at lines 5186--5194
[]\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo
nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T
1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/
n/10 ,
[806]
Underfull \hbox (badness 1648) in paragraph at lines 5263--5267
[]\T1/ptm/m/n/10 title for the Quartz win-dow (ap-plies to on-screen out-put on
ly), de-fault
[807] [808] [809] [810] [811] [812] [813]
Underfull \hbox (badness 10000) in paragraph at lines 5686--5689
[]\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red
/green/blue) into HSV space
[814]
Underfull \vbox (badness 3803) has occurred while \output is active [815]
[816] [817] [818] [819]
Underfull \hbox (badness 1189) in paragraph at lines 6082--6084
[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
[820] [821]
Underfull \hbox (badness 10000) in paragraph at lines 6180--6182
[]\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK 
lan-guages and
[822] [823] [824] [825]
Underfull \hbox (badness 3780) in paragraph at lines 6471--6477
[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1
0 "AvantGarde"\T1/ptm/m/n/10 ,
[826] [827] [828]
Underfull \hbox (badness 2680) in paragraph at lines 6667--6669
[]\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n
umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of
[829] [830] [831]) (./graphics-pkg.tex [832]
Chapter 5.
[833] [834] [835] [836] [837] [838] [839] [840] [841] [842] [843]
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[]\T1/zi4/m/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/p
tm/m/n/10 in-ter-face to the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/pt
m/m/n/10 in
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[][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works 
nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n
/10 ,
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\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
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[]\T1/ptm/m/n/10 vector of back-ground (fill) col-ors for the open plot sym-bol
s given by
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[]\T1/ptm/m/n/10 a func-tion which in-di-cates what should hap-pen when the dat
a con-tain
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[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used: see
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[]\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n
/10 (width, height) \T1/ptm/m/n/10 in user co-or-di-nate units.

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\T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin"
) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that
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[911]
</«PKGBUILDDIR»/library/graphics/help/figures/mai.pdf, id=22
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[]\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2
:6\T1/ptm/m/n/10 ) cor-re-spond to
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</«PKGBUILDDIR»/library/graphics/help/figures/pch.pdf, id=22
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[][] 
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\T1/ptm/m/n/10 avoided (see the Warn-ings sec-tion be-low). Split-screen mode i
s ex-ited by the com-mand
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[]\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d
rawn be-tween the point \T1/zi4/m/n/10 (x0[i], y0[i]) \T1/ptm/m/n/10 and the po
int
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[]\T1/ptm/m/n/10 The main ti-tle (on top) us-ing font and size (char-ac-ter ex-
pan-sion)

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[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font and size \T1/zi4/m/n/10 par
("font.sub") \T1/ptm/m/n/10 and color
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n.units}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8704 \HeaderA{units}{Graphical Units}{units}
                                               [975] [976] [977] [978])
(./grid-pkg.tex
Chapter 6.

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[]\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1
/zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio
n of
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[][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m
/n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10
 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 unit[][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
[1052] [1053] [1054] [1055]
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[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
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\T1/ptm/m/n/10 and to spec-ify the min-i-mum or max-i-mum of a list of unit ob-
jects (e.g.,
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[]\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by
 do-ing some-thing like
[1085] [1086] [1087] [1088]) (./methods-pkg.tex
Chapter 7.
[1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099]
[1100] [1101] [1102] [1103] [1104] [1105] [1106] [1107] [1108]
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[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \
T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package
"\T1/ptm/m/n/10 , also of class
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[]\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c
an be an ob-ject of class

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\T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1
0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the
[1118] [1119] [1120] [1121] [1122] [1123] [1124] [1125]
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[]\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p
tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o
b-jects of class
[1126] [1127]
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[]\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1
0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re
-turned re-sult is in
[1128]
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\T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo
ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store
s the
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[]\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na
me of the pack-age (with-out the ex-tra-ne-ous
[1136] [1137] [1138] [1139] [1140]
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[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these 
classes takes spe-cial ar-gu-ments

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[]\T1/ptm/m/n/10 The
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[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "SealedMethodDefinition" \T1/ptm/m/n/
10 is cre-ated by a call to [][]\T1/zi4/m/n/10 setMethod[][][] \T1/ptm/m/n/10 w
ith ar-gu-ment

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[]\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for 
the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar

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\T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T
1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by
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\T1/ptm/m/n/10 names cor-re-spond-ing to some or all of the for-mal ar-gu-ments
. In the pre-vi-ous ex-am-ple,

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\T1/ptm/m/n/10 if se-lect-ing class \T1/zi4/m/n/10 "track" \T1/ptm/m/n/10 for \
T1/zi4/m/n/10 x\T1/ptm/m/n/10 , find-ing that the se-lec-tion was an-other meth
-ods list and

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[]\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10
 the method to use in re-sponse to a
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[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
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[]\T1/ptm/m/n/10 Two op-tional method names are in-ter-preted spe-cially, \T1/z
i4/m/n/10 initialize \T1/ptm/m/n/10 and
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\T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth
od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class
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                                                 [1189]
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[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
[1190] [1191] [1192]
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[]\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, 
a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal
ly
[1193] [1194] [1195] [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203]
[1204] [1205] [1206] [1207] [1208] [1209] [1210] [1211] [1212] [1213] [1214]
[1215] [1216] [1217] [1218] [1219] [1220] [1221] [1222] [1223] [1224] [1225]
[1226]
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[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1227] [1228] [1229] [1230]) (./parallel-pkg.tex
Chapter 8.

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[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4
/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[
][][]: see
[1231] [1232] [1233] [1234] [1235] [1236] [1237] [1238] [1239] [1240] [1241]
[1242] [1243] [1244] [1245] [1246] [1247] [1248] [1249] [1250]
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[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R
andom.seed \T1/ptm/m/n/10 when the
[1251] [1252]) (./splines-pkg.tex
Chapter 9.

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[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
[1253] [1254] [1255] [1256] [1257] [1258] [1259] [1260] [1261] [1262] [1263]
[1264] [1265] [1266] [1267]) (./stats-pkg.tex [1268]
Chapter 10.
[1269] [1270] [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279]
[1280] [1281]
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[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm 
\T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for
[1282] [1283] [1284] [1285] [1286] [1287] [1288] [1289]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1290] [1291] [1292]
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[]\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov", "lm") \T1/ptm/m/n/
10 or for mul-ti-ple re-sponses of class
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[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
[1304] [1305] [1306] [1307] [1308]
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[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
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[1320] [1321]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1322] [1323] [1324] [1325] [1326] [1327] [1328] [1329] [1330] [1331] [1332]
[1333] [1334] [1335] [1336] [1337] [1338] [1339] [1340] [1341]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
[1342] [1343] [1344] [1345] [1346] [1347] [1348] [1349] [1350]
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[]\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/
ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p
tm/m/n/10 . For

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[]\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se-
quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is 
given by
[1351] [1352] [1353] [1354]
Underfull \hbox (badness 1142) in paragraph at lines 5400--5412
\T1/ptm/m/n/10 For \T1/zi4/m/n/10 cov()\T1/ptm/m/n/10 , a non-Pearson method is
 un-usual but avail-able for the sake of com-plete-ness.
[1355] [1356] [1357]
Underfull \hbox (badness 2503) in paragraph at lines 5539--5543
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,

Underfull \hbox (badness 1168) in paragraph at lines 5600--5605
[]\T1/ptm/m/n/10 For Spear-man's test, p-values are com-puted us-ing al-go-rith
m AS 89 for $\OML/cmm/m/it/10 n < \OT1/cmr/m/n/10 1290$ \T1/ptm/m/n/10 and
[1358] [1359] [1360] [1361] [1362] [1363] [1364] [1365]
Underfull \hbox (badness 8132) in paragraph at lines 6042--6047
\T1/ptm/m/n/10 then \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is a den-dro-gram of the sa
me graph struc-ture as \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and for each node,
[1366] [1367] [1368] [1369]
Underfull \hbox (badness 7081) in paragraph at lines 6317--6320
[]\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be
 con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method

Underfull \hbox (badness 10000) in paragraph at lines 6321--6323
[]\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra
m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also
[1370] [1371] [1372] [1373] [1374] [1375] [1376] [1377] [1378] [1379] [1380]
[1381] [1382]
Underfull \hbox (badness 10000) in paragraph at lines 7129--7132
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T
1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the
[1383] [1384]
Underfull \hbox (badness 10000) in paragraph at lines 7266--7269
[]\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/zi4/m/n/10 ht
tp : / / cran . r-[]project . org / web / views /
[1385] [1386] [1387] [1388]
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[1390] [1391] [1392] [1393] [1394] [1395] [1396] [1397] [1398] [1399] [1400]
[1401] [1402] [1403] [1404] [1405] [1406] [1407] [1408] [1409]
Underfull \hbox (badness 2626) in paragraph at lines 8764--8767
[]\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/
m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1410]
Underfull \hbox (badness 2503) in paragraph at lines 8864--8868
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1411] [1412] [1413] [1414] [1415]
Overfull \hbox (6.88992pt too wide) in paragraph at lines 9198--9200
[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Fligner-Killeen test of
 homogeneity of variances"\T1/ptm/m/n/10 . 
[1416] [1417] [1418] [1419] [1420] [1421] [1422] [1423] [1424] [1425]
Underfull \hbox (badness 1019) in paragraph at lines 9864--9867
[]\T1/ptm/m/n/10 See also [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org /
 wiki / Incomplete _ gamma _ function$[][]\T1/ptm/m/n/10 , or [][]$\T1/zi4/m/n/
10 http : / / dlmf .
[1426] [1427] [1428] [1429] [1430]
Underfull \hbox (badness 4518) in paragraph at lines 10125--10130
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1431] [1432] [1433] [1434]
Underfull \hbox (badness 2142) in paragraph at lines 10467--10470
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@
[1435]
Underfull \hbox (badness 1253) in paragraph at lines 10486--10489
[]\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][
]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it-
er-a-tion. Hence,
[1436]
Underfull \hbox (badness 1708) in paragraph at lines 10548--10552
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1437] [1438] [1439] [1440] [1441] [1442]
Underfull \hbox (badness 1694) in paragraph at lines 10944--10947
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to

Underfull \hbox (badness 1867) in paragraph at lines 10963--10972
\T1/ptm/m/n/10 in the row case. If ei-ther is miss-ing, as by de-fault, then th
e or-der-ing of the cor-re-
[1443] [1444] [1445] [1446] [1447] [1448] [1449] [1450]pdfTeX warning (ext4): d
estination with the same identifier (name{Rfn.hat}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.11410 \aliasA{hat}{influence.measures}{hat}
                                              [1451] [1452]
Underfull \hbox (badness 1484) in paragraph at lines 11533--11535
[]\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main
ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
[1453] [1454] [1455] [1456] [1457] [1458] [1459] [1460] [1461]
Underfull \hbox (badness 4441) in paragraph at lines 12091--12093
[]\T1/ptm/m/n/10 vector of dif-fer-enc-ing co-ef-fi-cients, so an ARMA model is
 fit-ted to

Underfull \hbox (badness 10000) in paragraph at lines 12098--12100
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa
ult[][][] \T1/ptm/m/n/10 when
[1462] [1463] [1464] [1465] [1466] [1467]
Underfull \hbox (badness 2894) in paragraph at lines 12432--12436
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
[1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475] [1476] [1477] [1478]
Underfull \hbox (badness 4518) in paragraph at lines 13127--13132
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1479] [1480] [1481] [1482] [1483] [1484] [1485] [1486] [1487] [1488]
Underfull \hbox (badness 4518) in paragraph at lines 13774--13779
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1489] [1490] [1491] [1492] [1493] [1494] [1495] [1496] [1497] [1498] [1499]
[1500] [1501] [1502] [1503] [1504] [1505] [1506] [1507] [1508]
Underfull \hbox (badness 2503) in paragraph at lines 14975--14979
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1509] [1510] [1511] [1512] [1513] [1514] [1515] [1516]
Underfull \hbox (badness 1418) in paragraph at lines 15484--15490
[]\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response 
\T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(, "offset") \T1
/ptm/m/n/10 and
[1517] [1518] [1519] [1520] [1521] [1522] [1523] [1524] [1525] [1526] [1527]
[1528] [1529] [1530] [1531] [1532] [1533] [1534] [1535] [1536] [1537] [1538]
[1539] [1540] [1541] [1542]
Underfull \hbox (badness 2359) in paragraph at lines 17108--17110
[]\T1/ptm/m/n/10 Douglas M. Bates and Saikat De-bRoy: David M. Gay for the For-
tran code used by
[1543] [1544]
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Underfull \vbox (badness 10000) has occurred while \output is active [1546]
[1547] [1548] [1549] [1550] [1551] [1552] [1553] [1554] [1555] [1556] [1557]
[1558]
Underfull \hbox (badness 1377) in paragraph at lines 18019--18024
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

Underfull \hbox (badness 1735) in paragraph at lines 18024--18027
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

Underfull \hbox (badness 1184) in paragraph at lines 18037--18041
\T1/ptm/m/n/10 value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + reltol
) \T1/ptm/m/n/10 at a step. De-faults to

Underfull \hbox (badness 2662) in paragraph at lines 18045--18049
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt
m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \
T1/ptm/m/n/10 meth-ods if
[1559] [1560] [1561]
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[1563] [1564] [1565] [1566] [1567] [1568]
Underfull \hbox (badness 1337) in paragraph at lines 18661--18664
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1569] [1570] [1571] [1572] [1573] [1574] [1575] [1576] [1577] [1578] [1579]
[1580] [1581]
Underfull \hbox (badness 5563) in paragraph at lines 19391--19393
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , add to al-read
y ex-ist-ing plot. Only valid for

Underfull \hbox (badness 1194) in paragraph at lines 19394--19397
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
[1582] [1583] [1584] [1585] [1586] [1587]
Underfull \hbox (badness 2503) in paragraph at lines 19761--19764
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1588]
Underfull \hbox (badness 10000) in paragraph at lines 19788--19790
[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1
/ptm/m/n/10 or
[1589] [1590] [1591] [1592] [1593] [1594] [1595] [1596] [1597] [1598] [1599]
[1600] [1601] [1602] [1603] [1604]
Underfull \hbox (badness 10000) in paragraph at lines 20788--20794
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][
][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 ,
[1605] [1606] [1607] [1608] [1609] [1610] [1611] [1612] [1613] [1614] [1615]
[1616] [1617] [1618] [1619] [1620] [1621] [1622] [1623] [1624] [1625] [1626]
[1627]
Underfull \hbox (badness 1337) in paragraph at lines 22123--22129
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1628] [1629] [1630] [1631] [1632] [1633] [1634] [1635] [1636] [1637] [1638]
[1639]
Underfull \hbox (badness 10000) in paragraph at lines 22916--22919
[]\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by
[1640] [1641] [1642] [1643] [1644] [1645] [1646] [1647] [1648]
Underfull \hbox (badness 10000) in paragraph at lines 23493--23496
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run
med(x, k) \T1/ptm/m/n/10 sim-ply has
[1649]
Underfull \hbox (badness 3690) in paragraph at lines 23544--23548
[][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's
 end point rule and is called by de-fault from
[1650] [1651] [1652] [1653] [1654]
Underfull \hbox (badness 7667) in paragraph at lines 23811--23813
[]\T1/ptm/m/n/10 a nu-meric vec-tor or an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-je
ct which is co-ercible to one by
[1655] [1656] [1657]
Underfull \hbox (badness 3439) in paragraph at lines 24014--24020
[][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSasympO
rig[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSbiexp[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 SSfol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSfpl[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 SSgompertz[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 SSlogis[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSmicmen[][][]\T1/ptm/m/n/1
0 ,
[1658] [1659] [1660] [1661] [1662] [1663] [1664] [1665] [1666]
Underfull \hbox (badness 10000) in paragraph at lines 24562--24567
[]\T1/ptm/m/n/10 integer or [][]\T1/zi4/m/n/10 function[][][] \T1/ptm/m/n/10 gi
v-ing the num-ber of knots to use when
[1667] [1668] [1669] [1670] [1671] [1672] [1673] [1674] [1675] [1676] [1677]
[1678] [1679] [1680] [1681]
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[1683]
Underfull \hbox (badness 3514) in paragraph at lines 25578--25583
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1684]
Underfull \hbox (badness 3514) in paragraph at lines 25640--25645
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1685]
Underfull \hbox (badness 3514) in paragraph at lines 25697--25702
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1686]
Underfull \hbox (badness 3514) in paragraph at lines 25758--25764
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1687] [1688] [1689] [1690]
Underfull \hbox (badness 3514) in paragraph at lines 25971--25976
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion

Underfull \hbox (badness 3514) in paragraph at lines 26027--26032
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1691]
Underfull \hbox (badness 3514) in paragraph at lines 26084--26089
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1692]
Underfull \hbox (badness 3514) in paragraph at lines 26139--26144
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1693] [1694]
Underfull \hbox (badness 6691) in paragraph at lines 26208--26213
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p
tm/m/n/10 . It is the value of the ex-pres-sion
[1695] [1696] [1697] [1698] [1699] [1700] [1701] [1702]
Underfull \hbox (badness 10000) in paragraph at lines 26732--26735
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-

Underfull \hbox (badness 10000) in paragraph at lines 26732--26735
\T1/ptm/m/n/10 trac-tion, which should be odd. If \T1/zi4/m/n/10 NULL\T1/ptm/m/
n/10 , the de-fault,
[1703] [1704] [1705] [1706] [1707] [1708] [1709] [1710] [1711] [1712]
Underfull \hbox (badness 5431) in paragraph at lines 27338--27340
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1713] [1714] [1715] [1716]
Underfull \hbox (badness 5431) in paragraph at lines 27548--27551
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1717] [1718] [1719] [1720] [1721]
Underfull \hbox (badness 1337) in paragraph at lines 27860--27864
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1722] [1723]
Underfull \hbox (badness 10000) in paragraph at lines 27977--27980
[]\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/
10 ; cur-rently ex-cept for \T1/zi4/m/n/10 rt()\T1/ptm/m/n/10 , only for
[1724] [1725] [1726]
Underfull \hbox (badness 1616) in paragraph at lines 28160--28163
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
[1727] [1728] [1729] [1730] [1731] [1732] [1733] [1734] [1735] [1736] [1737]
[1738] [1739] [1740] [1741] [1742] [1743] [1744] [1745]
Underfull \hbox (badness 10000) in paragraph at lines 29287--29291
[]\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z
i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect
[1746] [1747] [1748]
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[1750] [1751]
Underfull \hbox (badness 1337) in paragraph at lines 29651--29655
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1752] [1753] [1754] [1755] [1756] [1757] [1758] [1759]
Underfull \hbox (badness 1337) in paragraph at lines 30135--30139
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1760]
Underfull \hbox (badness 5161) in paragraph at lines 30228--30230
[]\T1/ptm/m/n/10 an es-ti-mate of the lo-ca-tion pa-ram-e-ter. (Only present if
 ar-gu-ment
[1761] [1762] [1763] [1764] [1765] [1766]
Underfull \hbox (badness 10000) in paragraph at lines 30592--30597
[]\T1/ptm/m/n/10 There is a \T1/zi4/m/n/10 summary \T1/ptm/m/n/10 method for co
n-tin-gency ta-ble ob-jects cre-ated by \T1/zi4/m/n/10 table \T1/ptm/m/n/10 or
[1767] [1768] [1769]) (./stats4-pkg.tex [1770]
Chapter 11.
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h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup
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                   \relax 
l.407 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                   [1777] [1778] [1779]
[1780]) (./tcltk-pkg.tex
Chapter 12.
[1781] [1782] [1783] [1784] [1785] [1786] [1787]
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[]\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing
 any Tk or Tcl com-mand by sim-ply run-ning
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[][][]\T1/zi4/m/n/10 select.list[][][] \T1/ptm/m/n/10 (a text ver-sion ex-cept 
on Win-dows and the OS X GUI), [][]\T1/zi4/m/n/10 menu[][][] \T1/ptm/m/n/10 (wh
ose
[1801]) (./tools-pkg.tex [1802]
Chapter 13.
[1803]

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[1804]
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[]\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b
e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
[1805] [1806]
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[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types

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\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe
ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

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\T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee
dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 formatMastersthesis\T1/ptm/m/n/10 ,

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\T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm
/m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma
tTechreport \T1/ptm/m/n/10 and
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[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine 
to use. Over-rides any
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[]\T1/ptm/m/n/10 Delete files in the tem-po-rary di-rec-tory? This op-tion is i
g-nored when
[1820]
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\T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe
n-den-cies (de-
[1821]
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[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

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[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a 
pre-vi-ous

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[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing


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\T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z
i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 ,
[1822] [1823] [1824]
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[]\T1/ptm/m/n/10 Re-save PDF files (es-pe-cially vi-gnettes) more com-pactly. S
up-port func-tion for
[1825] [1826] [1827]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of

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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see
[1828] [1829] [1830] [1831]pdfTeX warning (ext4): destination with the same ide
ntifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1721 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
                                                   [1832] [1833]
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[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/n/10 TRUE
\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/n/10 De
pendsList \T1/ptm/m/n/10 ob-ject

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\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
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[]\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t
or of links, as re-turned by
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[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
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[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The

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\T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file
[1867] [1868]
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[]\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/sl/10 TR
UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/sl/10
 DependsList \T1/ptm/m/n/10 ob-ject

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\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
[1869] [1870]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to be used in the `\T
1/zi4/m/sl/10 PACKAGES\T1/ptm/m/n/10 ' and
[1871] [1872] [1873] [1874]) (./utils-pkg.tex
Chapter 14.
[1875]
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ',
[1876] [1877]
Underfull \hbox (badness 1454) in paragraph at lines 197--200
[]\T1/ptm/m/n/10 logical in-di-cat-ing if the search should be case-insensitive
, \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 by de-

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[]\T1/zi4/m/sl/10 find \T1/ptm/m/n/10 is a dif-fer-ent user in-ter-face for the
 same task as \T1/zi4/m/sl/10 apropos\T1/ptm/m/n/10 . How-ever, by de-fault
[1878] [1879] [1880] [1881] [1882] [1883]
Underfull \hbox (badness 10000) in paragraph at lines 543--549
[]\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1
0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 ,

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\T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel
l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the
[1884]
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[]\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to
 se-lect which of the pack-ages on the repos-i-to-

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\T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi
4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as
[1885]
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[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O
S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/
10 "License_is_FOSS"\T1/ptm/m/n/10 ,
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[1892] [1893] [1894] [1895]
Underfull \hbox (badness 1371) in paragraph at lines 1320--1322
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
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[]\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th
is func-tion is in-voked for its side ef-fect of up-dat-ing
[1903] [1904]
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[]\T1/ptm/m/n/10 One can in-clude an auto-generated pack-age ci-ta-tion in the 
`\T1/zi4/m/sl/10 CITATION\T1/ptm/m/n/10 ' file via
[1905]
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[]\T1/ptm/m/n/10 A list of keys that have been pre-vi-ously cited, to be used w
hen
[1906] [1907] [1908] [1909]
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sim-pli-fied to
 an [][]\T1/zi4/m/sl/10 array[][][] \T1/ptm/m/n/10 (typ-i-

Underfull \hbox (badness 1990) in paragraph at lines 2233--2236
[]\T1/ptm/m/n/10 a [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4
/m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m
/n/10 ar-gu-ment above. In the lat-ter case, the iden-tity
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[1921] [1922] [1923] [1924]
Underfull \hbox (badness 1412) in paragraph at lines 3227--3231
[]\T1/ptm/m/n/10 The \T1/zi4/m/sl/10 "libcurl" \T1/ptm/m/n/10 and \T1/zi4/m/sl/
10 "wget" \T1/ptm/m/n/10 meth-ods fol-low `\T1/zi4/m/sl/10 http://\T1/ptm/m/n/1
0 ' and `\T1/zi4/m/sl/10 https://\T1/ptm/m/n/10 ' redi-rec-tions: the

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[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the \T1/zi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the
[1925]
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[]\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers 
via en-vi-ron-ment vari-able
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[1937] [1938]pdfTeX warning (ext4): destination with the same identifier (name{
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<to be read again> 
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l.4096 ...mat Unordered and Ordered Lists}{format}
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ation with the same identifier (name{Rfn.format.1}) has been already used, dupl
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                                                   [1939] [1940] [1941]
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[1953]
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
[1954] [1955]
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[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

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\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file
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Underfull \hbox (badness 10000) in paragraph at lines 5308--5317
[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,
[1958]
Underfull \hbox (badness 2150) in paragraph at lines 5371--5374
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See
[1959] [1960]
Underfull \hbox (badness 3118) in paragraph at lines 5508--5510
[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
[1961]
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[]\T1/ptm/m/n/10 To in-stall a source pack-age with com-piled code only for the
 sub-architecture used by
[1962]
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[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/sl/10 available.packag
es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able
[1963] [1964]
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[]\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to
 be passed

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\T1/ptm/m/n/10 to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a source pac
k-age in-stall. E.g.,
[1965]
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[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/sl/
10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail-

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\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
 are source pack-ages

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\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by
[1966]
Underfull \hbox (badness 10000) in paragraph at lines 5885--5890
[][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10
 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/
10 ,
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Underfull \hbox (badness 10000) in paragraph at lines 7097--7099
[]\T1/zi4/m/sl/10 packageVersion() \T1/ptm/m/n/10 is a con-ve-nience short-cut,
 al-low-ing things like

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[]\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,
[1987] [1988] [1989] [1990] [1991] [1992] [1993] [1994]
Underfull \hbox (badness 1789) in paragraph at lines 7652--7654
[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
 more dis-cus-sion of the
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[]\T1/ptm/m/n/10 The name \T1/zi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b
e used on Win-dows, in which case
[2008]
Underfull \hbox (badness 3000) in paragraph at lines 8613--8618
[][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 read.t
able[][][]\T1/ptm/m/n/10 ;
[2009] [2010] [2011] [2012] [2013] [2014] [2015] [2016] [2017]
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[][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 write.
table[][][]\T1/ptm/m/n/10 ;
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[2029] [2030] [2031] [2032]
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[][][]$\T1/zi4/m/sl/10 http : / / en . wikipedia . org / wiki / Ctags$[][]\T1/p
tm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emacs
 / manual /
[2033] [2034] [2035]
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[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n
ow taken from the en-vi-ron-ment vari-able
[2036]
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[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a
[2037]
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[]\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing 
whether PNG fig-ures should be gen-er-ated. Ig-nored if

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[]\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing 
whether JPEG fig-ures should be gen-er-ated. Ig-nored if
[2038]
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[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
tions can be ex-e-cuted. If
[2039] [2040] [2041] [2042] [2043]
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[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1
/zi4/m/sl/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via

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[]\T1/ptm/m/n/10 Repository `\T1/zi4/m/sl/10 CRAN\T1/ptm/m/n/10 ' is treated sp
e-cially: the value is taken from the cur-rent set-ting of
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[]\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa
ult", "internal", "wininet", "libcurl")\T1/ptm/m/n/10 :
[97] [98]
Underfull \hbox (badness 10000) in paragraph at lines 6276--6279
[]\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo
st gen-eral form (from RFC1738) is
[99]
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Underfull \hbox (badness 1442) in paragraph at lines 6437--6443
[]\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \
T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re-
move a

Underfull \hbox (badness 1248) in paragraph at lines 6437--6443
\T1/ptm/m/n/10 Byte Or-der Mark if present (which it of-ten is for files and we
b-pages gen-er-ated by Mi-

Underfull \hbox (badness 2080) in paragraph at lines 6437--6443
\T1/ptm/m/n/10 crosoft ap-pli-ca-tions). If a BOM is re-quired (it is not rec-o
m-mended) when writ-ing it
[101]
Underfull \hbox (badness 3568) in paragraph at lines 6498--6505
\T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z
i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as
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[105] [106] [107] [108] [109] [110] [111] [112]
Underfull \hbox (badness 4595) in paragraph at lines 7191--7194
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h
igh-est, for
[113]
Underfull \hbox (badness 3000) in paragraph at lines 7227--7229
[]\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0, \T1/zi4/m/n/10 
getOption("OutDec") \T1/ptm/m/n/10 is con-sulted when la-bels are con-structed 
for

Underfull \hbox (badness 2351) in paragraph at lines 7252--7255
[][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c
ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][
]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T
1/ptm/m/n/10 ,
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Underfull \hbox (badness 10000) in paragraph at lines 7502--7513
[]\T1/zi4/m/n/10 data.frame \T1/ptm/m/n/10 con-verts each of its ar-gu-ments to
 a data frame by call-ing
[118]
Underfull \hbox (badness 4479) in paragraph at lines 7574--7583
[][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 
, [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[]
[][] \T1/ptm/m/n/10 (for the col-umn names),

Underfull \hbox (badness 2469) in paragraph at lines 7574--7583
[][]\T1/zi4/m/n/10 [.data.frame[][][] \T1/ptm/m/n/10 for sub-set-ting meth-ods,
 [][]\T1/zi4/m/n/10 Math.data.frame[][][] \T1/ptm/m/n/10 etc, about \T1/ptm/m/i
t/10 Group \T1/ptm/m/n/10 meth-ods for
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[131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142]
[143]
Underfull \hbox (badness 1394) in paragraph at lines 9182--9187
[]\T1/ptm/m/n/10 Subtraction of date-time ob-jects gives an ob-ject of this cla
ss, by call-ing \T1/zi4/m/n/10 difftime \T1/ptm/m/n/10 with
[144] [145] [146] [147] [148]
Underfull \hbox (badness 1052) in paragraph at lines 9519--9524
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 dontCheck \T1/ptm/m/n/10 func-tion is the s
ame as [][]\T1/zi4/m/n/10 identity[][][]\T1/ptm/m/n/10 , but is in-ter-preted b
y \T1/zi4/m/n/10 R CMD check

Underfull \hbox (badness 1231) in paragraph at lines 9519--9524
\T1/ptm/m/n/10 code anal-y-sis as a di-rec-tive to sup-press check-ing of \T1/z
i4/m/n/10 x\T1/ptm/m/n/10 . Cur-rently this is only used by
[149] [150]
Underfull \hbox (badness 10000) in paragraph at lines 9657--9661
[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / IEEE _ 754-[]198
5$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wi
ki / IEEE _
[151] [152] [153] [154] [155] [156]
Underfull \hbox (badness 2150) in paragraph at lines 10061--10064
[]\T1/ptm/m/n/10 logical in-di-cat-ing if du-pli-ca-tion should be con-sid-ered
 from the re-verse
[157]
Underfull \hbox (badness 6396) in paragraph at lines 10075--10083
[]\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len
t method def-i-ni-tions for

Underfull \hbox (badness 2409) in paragraph at lines 10116--10123
[]\T1/ptm/m/n/10 Except for fac-tors, log-i-cal and raw vec-tors the de-fault \
T1/zi4/m/n/10 nmax = NA \T1/ptm/m/n/10 is equiv-a-lent to
[158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169]
[170] [171] [172] [173]
Underfull \hbox (badness 4569) in paragraph at lines 11160--11164
[]\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been
 passed as an ar-gu-ment

Underfull \hbox (badness 2401) in paragraph at lines 11160--11164
\T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller'
s en-vi-ron-ment, i.e., one needs
[174] [175] [176] [177] [178] [179] [180] [181]
Underfull \hbox (badness 2698) in paragraph at lines 11736--11745
[]\T1/ptm/m/n/10 Both \T1/zi4/m/n/10 $ \T1/ptm/m/n/10 and \T1/zi4/m/n/10 [[ \T1
/ptm/m/n/10 can be ap-plied to en-vi-ron-ments. Only char-ac-ter in-dices are a
l-lowed

Underfull \hbox (badness 4341) in paragraph at lines 11736--11745
\T1/ptm/m/n/10 and no par-tial match-ing is done. The se-man-tics of these op-e
r-a-tions are those of
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Underfull \hbox (badness 6236) in paragraph at lines 12380--12383
[]\T1/ptm/m/n/10 For \T1/zi4/m/n/10 iconv \T1/ptm/m/n/10 this will give the im-
ple-men-ta-tion as well as the ver-sion, for ex-am-ple
[192] [193] [194] [195] [196] [197]
Underfull \hbox (badness 2253) in paragraph at lines 12758--12760
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
[198]
Underfull \hbox (badness 1565) in paragraph at lines 12829--12833
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo
lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi
le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/
10 , and
[199]
Underfull \hbox (badness 10000) in paragraph at lines 12873--12875
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m
/n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with
[200] [201]
Underfull \hbox (badness 1466) in paragraph at lines 13011--13014
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/
zi4/m/n/10 file.copy \T1/ptm/m/n/10 and
[202]
Underfull \hbox (badness 10000) in paragraph at lines 13119--13123
[][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac
cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [
][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/
zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 ,
[203]
Underfull \hbox (badness 10000) in paragraph at lines 13130--13133
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik
i /
[204] [205] [206] [207]
Underfull \hbox (badness 3965) in paragraph at lines 13382--13386
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
[208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218]
Underfull \hbox (badness 4429) in paragraph at lines 14112--14115
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
\T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for
[219]
Underfull \hbox (badness 10000) in paragraph at lines 14204--14206
[]\T1/ptm/m/n/10 If you set \T1/zi4/m/n/10 format \T1/ptm/m/n/10 it over-rides 
the set-ting of \T1/zi4/m/n/10 mode\T1/ptm/m/n/10 , so

Underfull \hbox (badness 10000) in paragraph at lines 14210--14214
[]\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b
ers on the dec-i-mal point, so
[220]
Underfull \hbox (badness 10000) in paragraph at lines 14252--14256
[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in
 \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt
m/m/n/10 3.2.0: for use

Underfull \hbox (badness 4156) in paragraph at lines 14252--14256
\T1/ptm/m/n/10 within [][]\T1/zi4/m/n/10 print[][][] \T1/ptm/m/n/10 meth-ods in
 pack-ages which might be used with ear-lier ver-sions: use
[221]
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[223] [224] [225] [226] [227] [228] [229]
Underfull \hbox (badness 2452) in paragraph at lines 14832--14836
[]\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m
ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-

Underfull \hbox (badness 1147) in paragraph at lines 14832--14836
\T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to
 the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_
WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and
[230] [231] [232]
Underfull \hbox (badness 1092) in paragraph at lines 15005--15010
[][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t
he DLL has been loaded us-ing
[233] [234] [235] [236]
Underfull \hbox (badness 6741) in paragraph at lines 15253--15257
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \
T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10
 ,
[237] [238] [239] [240]
Underfull \hbox (badness 1867) in paragraph at lines 15559--15566
[]\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][]
[] (or char-ac-ter string for
[241] [242] [243] [244]
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[246]
Underfull \hbox (badness 3679) in paragraph at lines 15939--15941
[]\T1/ptm/m/n/10 The TRE li-brary of Ville Lau-rikari ([][]$\T1/zi4/m/n/10 http
 : / / laurikari . net / tre/$[][]\T1/ptm/m/n/10 ) is used ex-cept for
[247] [248] [249] [250] [251] [252] [253]
Underfull \hbox (badness 1478) in paragraph at lines 16419--16422
[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
[254] [255] [256] [257]
Underfull \hbox (badness 10000) in paragraph at lines 16670--16672
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 http : / / www
 . unicode . org / reports / tr35 /
[258] [259] [260] [261] [262] [263] [264] [265] [266]
Underfull \hbox (badness 1442) in paragraph at lines 17233--17235
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see
[267]
Underfull \hbox (badness 2452) in paragraph at lines 17325--17341
[][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c
omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 ,
 [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi
cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\
T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 ,
[268] [269] [270] [271] [272] [273] [274]
Underfull \hbox (badness 1248) in paragraph at lines 17733--17736
[]\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type
s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n
/10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/
m/n/10 ,
[275] [276] [277] [278]
Underfull \hbox (badness 4739) in paragraph at lines 17989--17991
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
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[291] [292] [293] [294]
Underfull \hbox (badness 1360) in paragraph at lines 18937--18942
\T1/zi4/m/n/10 "none"\T1/ptm/m/n/10 . It is in-tended for the ver-sion of OpenS
SL used, but not all

Underfull \hbox (badness 10000) in paragraph at lines 18960--18966
[][][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / sslcerts . html$[][]
 \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs /

Underfull \hbox (badness 1127) in paragraph at lines 18960--18966
\T1/zi4/m/n/10 ssl-[]compared . html$[][] \T1/ptm/m/n/10 for more de-tails on S
SL ver-sions. Nor-mally \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 used with \T1/phv
/m/n/10 R
[295]
Underfull \hbox (badness 10000) in paragraph at lines 19033--19037
[]\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an
d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory

Underfull \hbox (badness 2460) in paragraph at lines 19033--19037
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/
10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T
1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10
 '
[296] [297]
Underfull \hbox (badness 1509) in paragraph at lines 19168--19175
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 library \T1/ptm/m/n/10 is called with no \T1
/zi4/m/n/10 package \T1/ptm/m/n/10 or \T1/zi4/m/n/10 help \T1/ptm/m/n/10 ar-gu-
ment, it lists all avail-able pack-ages

Underfull \hbox (badness 1354) in paragraph at lines 19168--19175
\T1/ptm/m/n/10 Use \T1/zi4/m/n/10 .packages(all = TRUE) \T1/ptm/m/n/10 to ob-ta
in just the names of all avail-able pack-ages, and

Underfull \hbox (badness 1014) in paragraph at lines 19184--19189
[]\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi
s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1
0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if
[298] [299] [300] [301] [302] [303] [304] [305] [306] [307] [308] [309]
Underfull \hbox (badness 1264) in paragraph at lines 19914--19919
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
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Underfull \hbox (badness 10000) in paragraph at lines 20668--20670
[]\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n
/10 has the prop-erty that
[321] [322] [323] [324] [325] [326] [327] [328] [329] [330] [331] [332]
[333] [334] [335] [336]
Underfull \hbox (badness 1655) in paragraph at lines 21666--21672
[][][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org / wiki / Data _ compressi
on$[][] \T1/ptm/m/n/10 for back-ground on data com-pres-sion,
[337] [338] [339]
Underfull \hbox (badness 1484) in paragraph at lines 21827--21835
[]\T1/ptm/m/n/10 The address-space limit is 2Gb un-der 32-bit Win-dows un-less 
the OS's de-fault has been
[340] [341] [342] [343]
Underfull \hbox (badness 2790) in paragraph at lines 22098--22101
[]\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s
ages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 22098--22101
\T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m
es-sages, so can be sup-pressed by
[344] [345] [346] [347]
Underfull \hbox (badness 1194) in paragraph at lines 22379--22382
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha
n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 .
 It calls
[348] [349] [350] [351]
Underfull \hbox (badness 10000) in paragraph at lines 22585--22591
[]\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 
, \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond-
ing

Underfull \hbox (badness 5862) in paragraph at lines 22585--22591
\T1/ptm/m/n/10 list, i.e., \T1/zi4/m/n/10 names(as.list(env, all.names = TRUE))
 \T1/ptm/m/n/10 which are also given by

Underfull \hbox (badness 10000) in paragraph at lines 22595--22598
[]\T1/ptm/m/n/10 It is pos-si-ble to up-date just part of the names at-tribute 
via the gen-eral rules:

Underfull \hbox (badness 10000) in paragraph at lines 22595--22598
\T1/ptm/m/n/10 see the ex-am-ples. This works be-cause the ex-pres-sion there i
s eval-u-ated as
[352] [353] [354] [355] [356] [357] [358] [359] [360] [361] [362] [363]
[364]
Underfull \hbox (badness 10000) in paragraph at lines 23487--23489
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m
ore ef-fi-cient than
[365] [366] [367] [368]
Underfull \hbox (badness 1199) in paragraph at lines 23701--23707
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 is.numeric \T1/ptm/m/n/
10 re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 if its ar-gu-ment is of [][]mode
[][][] \T1/zi4/m/n/10 "numeric"

Underfull \hbox (badness 2027) in paragraph at lines 23701--23707
\T1/ptm/m/n/10 ([][]type[][][] \T1/zi4/m/n/10 "double" \T1/ptm/m/n/10 or type \
T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 ) and not a fac-tor, and \T1/zi4/m/n/10 F
ALSE \T1/ptm/m/n/10 oth-er-wise. That is,
[369] [370] [371] [372] [373] [374] [375] [376]
Underfull \hbox (badness 1038) in paragraph at lines 24266--24275
[]\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/
10 R \T1/ptm/m/n/10 starts up. Ini-tially

Underfull \hbox (badness 1881) in paragraph at lines 24276--24279
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

Underfull \hbox (badness 6220) in paragraph at lines 24295--24297
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see

[377]
Underfull \hbox (badness 10000) in paragraph at lines 24367--24377
[]\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/zi4/m
/n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to

Underfull \hbox (badness 2142) in paragraph at lines 24378--24384
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr
ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 1968) in paragraph at lines 24391--24396
[]\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p
tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 10000) in paragraph at lines 24401--24403
[]\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v
alue
[378] [379] [380]
Underfull \hbox (badness 10000) in paragraph at lines 24645--24651
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/
n/10 setRepositories[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 24645--24651
\T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "http://bioconductor.org"\T1/p
tm/m/n/10 ' or the Eu-ro-pean mir-ror

Underfull \hbox (badness 10000) in paragraph at lines 24645--24651
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 "http://bioconductor.statistik.tu-dortmund.de"\T
1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 10000) in paragraph at lines 24658--24661
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][
][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10
 and

Underfull \hbox (badness 2689) in paragraph at lines 24682--24684
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see
[381]
Underfull \hbox (badness 10000) in paragraph at lines 24714--24719
[]\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/
10 (and in-di-rectly

Underfull \hbox (badness 1629) in paragraph at lines 24720--24731
\T1/ptm/m/n/10 si-ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi
4/m/n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use an
d

Underfull \hbox (badness 7203) in paragraph at lines 24732--24735
[]\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos
t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/
n/10 and

Underfull \hbox (badness 4084) in paragraph at lines 24742--24754
\T1/ptm/m/n/10 Pos-si-ble val-ues are \T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (t
he de-fault ex-cept un-der a CRAN OS X build),

Underfull \hbox (badness 10000) in paragraph at lines 24742--24754
\T1/zi4/m/n/10 "mac.binary."\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "mac.binary.maveric
ks" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "both" \T1/ptm/m/n/10 (the de-fault for C
RAN

Underfull \hbox (badness 7397) in paragraph at lines 24742--24754
\T1/ptm/m/n/10 OS X builds). Win-dows uses \T1/zi4/m/n/10 "win.binary"\T1/ptm/m
/n/10 . (\T1/zi4/m/n/10 "mac.binary.leopard" \T1/ptm/m/n/10 and

Underfull \hbox (badness 10000) in paragraph at lines 24756--24763
[]\T1/ptm/m/n/10 URLs of the repos-i-to-ries for use by [][]\T1/zi4/m/n/10 upda
te.packages[][][]\T1/ptm/m/n/10 . De-faults to

Underfull \hbox (badness 10000) in paragraph at lines 24756--24763
\T1/zi4/m/n/10 c(CRAN="@CRAN@")\T1/ptm/m/n/10 , a value that causes some util-i
-ties to prompt for a

Underfull \hbox (badness 6380) in paragraph at lines 24756--24763
\T1/ptm/m/n/10 CRAN mir-ror. To avoid this do set the CRAN mir-ror, by some-thi
ng like

Underfull \hbox (badness 1082) in paragraph at lines 24756--24763
\T1/zi4/m/n/10 local({r <- getOption("repos"); r["CRAN"] <- "http://my.local.cr
an";
[382] [383] [384] [385] [386]
Underfull \hbox (badness 10000) in paragraph at lines 25077--25081
[]\T1/ptm/m/n/10 The outer prod-uct of the ar-rays \T1/zi4/m/n/10 X \T1/ptm/m/n
/10 and \T1/zi4/m/n/10 Y \T1/ptm/m/n/10 is the ar-ray \T1/zi4/m/n/10 A \T1/ptm/
m/n/10 with di-men-sion

Underfull \hbox (badness 10000) in paragraph at lines 25077--25081
\T1/zi4/m/n/10 c(dim(X), dim(Y)) \T1/ptm/m/n/10 where el-e-ment \T1/zi4/m/n/10 
A[c(arrayindex.x, arrayindex.y)]
[387] [388] [389] [390] [391]
Underfull \hbox (badness 1735) in paragraph at lines 25395--25399
[]\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 paste() \T1/ptm/m/n/10 co-erces [][]\
T1/zi4/m/n/10 NA_character_[][][]\T1/ptm/m/n/10 , the char-ac-ter miss-ing valu
e, to \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 which
[392] [393] [394] [395] [396] [397] [398] [399] [400] [401]
Underfull \hbox (badness 2726) in paragraph at lines 25956--25959
[]\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di
-cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put,
 see
[402] [403] [404] [405] [406] [407] [408] [409] [410] [411] [412] [413]
[414]
Underfull \hbox (badness 1052) in paragraph at lines 26775--26780
[]\T1/zi4/m/n/10 qr.X \T1/ptm/m/n/10 re-turns $\OML/cmm/b/it/10 X$\T1/ptm/m/n/1
0 , the orig-i-nal ma-trix from which the qr ob-ject was con-structed, pro-vide
d
[415] [416] [417] [418] [419] [420] [421] [422] [423] [424] [425]
Underfull \hbox (badness 1533) in paragraph at lines 27503--27506
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[426] [427]
Underfull \hbox (badness 1163) in paragraph at lines 27665--27675
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\
T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in
[428] [429] [430] [431] [432] [433] [434] [435] [436] [437] [438] [439]
[440] [441] [442] [443] [444] [445] [446] [447] [448] [449] [450] [451]
Underfull \hbox (badness 10000) in paragraph at lines 29159--29163
[]\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n
/10 sup-port `named cap-ture'. If groups are named, e.g.,

Underfull \hbox (badness 1221) in paragraph at lines 29159--29163
\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t
he matches are also re-turned by name.

Underfull \hbox (badness 6188) in paragraph at lines 29181--29183
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p
ubs . opengroup . org / onlinepubs / 9699919799 /
[452] [453] [454] [455] [456] [457] [458] [459] [460]
Underfull \hbox (badness 1655) in paragraph at lines 29726--29728
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm
/m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for
[461] [462] [463] [464] [465] [466] [467] [468] [469] [470] [471]
Underfull \hbox (badness 10000) in paragraph at lines 30394--30398
[]\T1/zi4/m/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my c
ur-rent workspace', i.e.,
[472] [473] [474]
Underfull \hbox (badness 2302) in paragraph at lines 30634--30641
[]\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d
e-fined as $[]$,

Underfull \hbox (badness 2837) in paragraph at lines 30634--30641
\T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no
n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non
-missing

Underfull \hbox (badness 2980) in paragraph at lines 30634--30641
\T1/ptm/m/n/10 val-ues. In the case \T1/zi4/m/n/10 center = TRUE\T1/ptm/m/n/10 
, this is the same as the stan-dard de-vi-a-tion,

Underfull \hbox (badness 2181) in paragraph at lines 30634--30641
\T1/ptm/m/n/10 but in gen-eral it is not. (To scale by the stan-dard de-vi-a-ti
ons with-out cen-ter-ing, use
[475] [476] [477]
Underfull \hbox (badness 2261) in paragraph at lines 30788--30793
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i
t ap-plies to all fields; oth-er-wise, if

Underfull \hbox (badness 10000) in paragraph at lines 30815--30821
[]\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac-
ters
[478]
Underfull \hbox (badness 10000) in paragraph at lines 30891--30896
[]\T1/ptm/m/n/10 Note that since \T1/zi4/m/n/10 sep \T1/ptm/m/n/10 is a sep-a-r
a-tor and not a ter-mi-na-tor, read-ing a file by
[479] [480] [481] [482] [483] [484] [485] [486] [487] [488] [489] [490]
[491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501] [502]
[503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514]
[515] [516] [517] [518] [519] [520] [521]
Underfull \hbox (badness 1072) in paragraph at lines 33675--33679
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

Underfull \hbox (badness 10000) in paragraph at lines 33680--33684
[]\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/
10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 -
-no-init-file\T1/ptm/m/n/10 ',
[522]
Underfull \hbox (badness 10000) in paragraph at lines 33708--33714
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

Underfull \hbox (badness 10000) in paragraph at lines 33708--33714
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,

Underfull \hbox (badness 1320) in paragraph at lines 33708--33714
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in

Underfull \hbox (badness 3343) in paragraph at lines 33721--33728
\T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment 
vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 33721--33728
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 33721--33728
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[523] [524] [525] [526] [527]
Underfull \hbox (badness 10000) in paragraph at lines 34012--34018
[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form
at \T1/ptm/m/n/10 meth-ods is

Underfull \hbox (badness 1152) in paragraph at lines 34012--34018
\T1/zi4/m/n/10 "%Y-%m-%d %H:%M:%S" \T1/ptm/m/n/10 if any el-e-ment has a time c
om-po-nent which is
[528] [529] [530] [531] [532] [533] [534] [535] [536] [537] [538] [539]
[540] [541] [542] [543] [544] [545] [546] [547] [548] [549] [550] [551]
[552] [553] [554] [555]
Underfull \hbox (badness 3333) in paragraph at lines 35794--35799
[]\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi
s may need to be matched ex-plic-itly: for ex-am-ple
[556] [557] [558] [559] [560] [561] [562] [563] [564] [565]
Underfull \hbox (badness 1472) in paragraph at lines 36401--36404
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee
p their source in-clud-ing com-ments, see
[566] [567] [568] [569] [570] [571] [572] [573] [574] [575]
Underfull \hbox (badness 2671) in paragraph at lines 37063--37066
[]\T1/ptm/m/n/10 levels to re-move for all fac-tors in \T1/zi4/m/n/10 ...\T1/pt
m/m/n/10 . If set to \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 , it im-plies
[576] [577] [578] [579] [580] [581]
Underfull \hbox (badness 10000) in paragraph at lines 37467--37470
[][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$http : / / developer . r-[]project . org /
[582] [583]
Underfull \hbox (badness 10000) in paragraph at lines 37588--37592
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 getTaskCallbackNames
[][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer .
[584]
Underfull \hbox (badness 10000) in paragraph at lines 37650--37654
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[
][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer .
[585] [586] [587] [588] [589] [590] [591] [592] [593] [594] [595] [596]
[597] [598] [599] [600] [601] [602] [603] [604]
Underfull \hbox (badness 1990) in paragraph at lines 38945--38953
[]\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e
r-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 38945--38953
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less
[605] [606] [607] [608]
Underfull \hbox (badness 1515) in paragraph at lines 39217--39222
[]\T1/ptm/m/n/10 On most plat-forms `file' in-cludes sym-bolic links, fi-fos an
d sock-ets. Prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 2.15.0
[609] [610] [611] [612]
Underfull \hbox (badness 1917) in paragraph at lines 39447--39454
[]\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/
ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute
[613] [614] [615] [616] [617] [618] [619] [620] [621]
Underfull \hbox (badness 3668) in paragraph at lines 40023--40025
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[622]
Underfull \hbox (badness 2401) in paragraph at lines 40128--40132
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war
n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[623] [624] [625]
Underfull \hbox (badness 2111) in paragraph at lines 40297--40302
\T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n
ot empty, these are used as col-umn names.

Underfull \hbox (badness 6542) in paragraph at lines 40313--40318
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m
/n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has
 a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is
[626] [627] [628] [629] [630] [631] [632]
Underfull \hbox (badness 10000) in paragraph at lines 40747--40752
[]\T1/ptm/m/n/10 This is a spe-cial case of rank-ing, but as a less gen-eral fu
nc-tion than [][]\T1/zi4/m/n/10 rank[][][]

Underfull \hbox (badness 10000) in paragraph at lines 40747--40752
\T1/ptm/m/n/10 is more suit-able to be made generic. The de-fault method is sim
-i-lar to
[633] [634]
Underfull \hbox (badness 5417) in paragraph at lines 40839--40843
[]\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl
y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[635]
Underfull \hbox (badness 10000) in paragraph at lines 40900--40904
[]\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard
' reg-exps, in-clud-ing el-e-ments named
[636]) (./compiler-pkg.tex
Chapter 2.
[637] [638] [639] [640]) (./datasets-pkg.tex
Chapter 3.

Underfull \hbox (badness 10000) in paragraph at lines 12--14
[]\T1/ptm/m/n/10 This pack-age con-tains a va-ri-ety of datasets. For a com-ple
te list, use
[641] [642] [643] [644] [645] [646] [647] [648] [649] [650] [651] [652]
[653] [654] [655] [656] [657] [658] [659] [660] [661] [662] [663] [664]
[665] [666] [667] [668] [669] [670] [671] [672] [673] [674] [675] [676]
[677] [678] [679] [680] [681] [682] [683] [684] [685] [686] [687]
Underfull \vbox (badness 1515) has occurred while \output is active [688]
[689] [690] [691] [692] [693] [694] [695] [696] [697] [698] [699] [700]
[701] [702] [703] [704] [705] [706] [707]
Underfull \hbox (badness 6658) in paragraph at lines 3933--3935
[]\T1/ptm/m/n/10 For some pho-tos of Methuse-lah Walk see [][]$\T1/zi4/m/n/10 h
ttp : / / www . ltrr . arizona . edu / ~hallman /
[708]
Underfull \vbox (badness 10000) has occurred while \output is active [709]
[710] [711] [712]
Underfull \vbox (badness 10000) has occurred while \output is active [713]
Underfull \vbox (badness 10000) has occurred while \output is active [714]
[715] [716] [717] [718] [719] [720] [721]) (./grDevices-pkg.tex [722]
Chapter 4.
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[735] [736] [737] [738] [739]
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[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
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Underfull \hbox (badness 1852) in paragraph at lines 1263--1266
[]\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col-
ors that will be used in plot-ting, call-ing
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\T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\
T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/
10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and
[747]
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[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 if the de-vice does not sup-port cap-ture,
 oth-er-wise a ma-trix of color names (for
[748]
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[]\T1/ptm/m/n/10 logical; if \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , the func-tion 
also re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 when
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\T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 ,
 \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/
10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1
/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
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[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
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[]\T1/ptm/m/n/10 A length two in-te-ger vec-tor \T1/zi4/m/n/10 nr, nc \T1/ptm/m
/n/10 giv-ing the num-ber of rows and columns, ful-fill-ing
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[]\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv
e a C in-te-ger for-mat such as

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[]\T1/ptm/m/n/10 title string to em-bed as the `\T1/zi4/m/n/10 /Title\T1/ptm/m/
n/10 ' field in the file. De-faults to
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[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 paper \T1/ptm/m/n/10 ar-gu-ment sets the `\
T1/zi4/m/n/10 /MediaBox\T1/ptm/m/n/10 ' en-try in the file, which de-faults to 
\T1/zi4/m/n/10 width \T1/ptm/m/n/10 by
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\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-
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[]\T1/ptm/m/n/10 The TIFF spec-i-fi-ca-tion, in-clud-ing ex-ten-sions, at [][]$
\T1/zi4/m/n/10 http : / / partners . adobe . com / public /
[794]
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[]\T1/ptm/m/n/10 title string to em-bed as the \T1/zi4/m/n/10 Title \T1/ptm/m/n
/10 com-ment in the file. De-faults to
[795]
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[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
[796]
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\T1/ptm/m/n/10 For use in this way you will prob-a-bly want to use [][]\T1/zi4/
m/n/10 setEPS[][][]() \T1/ptm/m/n/10 to set the de-faults as

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\T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4
/m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/
zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm
/m/n/10 ,

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\T1/ptm/m/n/10 PostScript de-vice is us-ing URW fonts, you will ob-tain ac-cess
 to more char-ac-ters and

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\T1/ptm/m/n/10 more ap-pro-pri-ate met-rics by us-ing these names. To make thes
e eas-ier to re-mem-ber,

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[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East 
Asian lan-guages -- see
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[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \
T1/zi4/m/n/10 "rgb"\T1/ptm/m/n/10 ) (which is RGB+gray) and
[799]
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[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
[800] [801]
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[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

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\T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/
n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1
0 ,

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\T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino"
 \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG
othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 ,
[802]
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[]\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4
/m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu /

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\T1/zi4/m/n/10 chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Lunde's CJK
V re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly .
[803] [804] [805]
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[]\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo
nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T
1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/
n/10 ,
[806]
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[]\T1/ptm/m/n/10 title for the Quartz win-dow (ap-plies to on-screen out-put on
ly), de-fault
[807] [808] [809] [810] [811] [812] [813]
Underfull \hbox (badness 10000) in paragraph at lines 5686--5689
[]\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red
/green/blue) into HSV space
[814]
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[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
[820] [821]
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[]\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK 
lan-guages and
[822] [823] [824] [825]
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[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1
0 "AvantGarde"\T1/ptm/m/n/10 ,
[826] [827] [828]
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[]\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n
umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of
[829] [830] [831]) (./graphics-pkg.tex [832]
Chapter 5.
[833] [834] [835] [836] [837] [838] [839] [840] [841] [842] [843]
Underfull \hbox (badness 10000) in paragraph at lines 683--690
[]\T1/zi4/m/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/p
tm/m/n/10 in-ter-face to the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/pt
m/m/n/10 in
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[][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works 
nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n
/10 ,
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\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
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[]\T1/ptm/m/n/10 vector of back-ground (fill) col-ors for the open plot sym-bol
s given by
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[]\T1/ptm/m/n/10 a func-tion which in-di-cates what should hap-pen when the dat
a con-tain
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[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used: see
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[]\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n
/10 (width, height) \T1/ptm/m/n/10 in user co-or-di-nate units.

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\T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin"
) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that
[910]
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[911]
</«PKGBUILDDIR»/library/graphics/help/figures/mai.pdf, id=22
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[]\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2
:6\T1/ptm/m/n/10 ) cor-re-spond to
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[][] 
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[940]
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\T1/ptm/m/n/10 avoided (see the Warn-ings sec-tion be-low). Split-screen mode i
s ex-ited by the com-mand
[951]
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[]\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d
rawn be-tween the point \T1/zi4/m/n/10 (x0[i], y0[i]) \T1/ptm/m/n/10 and the po
int
[952] [953] [954] [955] [956] [957] [958] [959] [960] [961] [962] [963]
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[]\T1/ptm/m/n/10 The main ti-tle (on top) us-ing font and size (char-ac-ter ex-
pan-sion)

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[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font and size \T1/zi4/m/n/10 par
("font.sub") \T1/ptm/m/n/10 and color
[973] [974]pdfTeX warning (ext4): destination with the same identifier (name{Rf
n.units}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8704 \HeaderA{units}{Graphical Units}{units}
                                               [975] [976] [977] [978])
(./grid-pkg.tex
Chapter 6.

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[]\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1
/zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio
n of
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[][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m
/n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10
 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 unit[][][]\T1/ptm/m/n/10 ,
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[1006] [1007] [1008] [1009] [1010] [1011] [1012] [1013] [1014] [1015] [1016]
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[1050] [1051]
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
[1052] [1053] [1054] [1055]
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[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
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[1067] [1068] [1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076]
Underfull \hbox (badness 10000) in paragraph at lines 5854--5860
\T1/ptm/m/n/10 and to spec-ify the min-i-mum or max-i-mum of a list of unit ob-
jects (e.g.,
[1077] [1078] [1079] [1080] [1081] [1082] [1083] [1084]
Underfull \hbox (badness 7649) in paragraph at lines 6324--6327
[]\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by
 do-ing some-thing like
[1085] [1086] [1087] [1088]) (./methods-pkg.tex
Chapter 7.
[1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099]
[1100] [1101] [1102] [1103] [1104] [1105] [1106] [1107] [1108]
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[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \
T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package
"\T1/ptm/m/n/10 , also of class
[1109] [1110] [1111] [1112] [1113] [1114] [1115] [1116] [1117]
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[]\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c
an be an ob-ject of class

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\T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1
0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the
[1118] [1119] [1120] [1121] [1122] [1123] [1124] [1125]
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[]\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p
tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o
b-jects of class
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[]\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1
0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re
-turned re-sult is in
[1128]
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\T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo
ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store
s the
[1129] [1130] [1131] [1132] [1133] [1134] [1135]
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[]\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na
me of the pack-age (with-out the ex-tra-ne-ous
[1136] [1137] [1138] [1139] [1140]
Underfull \hbox (badness 10000) in paragraph at lines 3667--3672
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these 
classes takes spe-cial ar-gu-ments

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[]\T1/ptm/m/n/10 The
[1141] [1142] [1143] [1144] [1145] [1146]
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[1148] [1149] [1150] [1151] [1152] [1153] [1154]
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[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "SealedMethodDefinition" \T1/ptm/m/n/
10 is cre-ated by a call to [][]\T1/zi4/m/n/10 setMethod[][][] \T1/ptm/m/n/10 w
ith ar-gu-ment

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[]\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for 
the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar

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\T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T
1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by
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[1162]
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[1164]
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\T1/ptm/m/n/10 names cor-re-spond-ing to some or all of the for-mal ar-gu-ments
. In the pre-vi-ous ex-am-ple,

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\T1/ptm/m/n/10 if se-lect-ing class \T1/zi4/m/n/10 "track" \T1/ptm/m/n/10 for \
T1/zi4/m/n/10 x\T1/ptm/m/n/10 , find-ing that the se-lec-tion was an-other meth
-ods list and

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[]\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10
 the method to use in re-sponse to a
[1165] [1166] [1167] [1168] [1169]
Underfull \hbox (badness 1087) in paragraph at lines 5649--5654
[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
[1170] [1171] [1172] [1173]
Underfull \hbox (badness 2221) in paragraph at lines 5878--5883
[]\T1/ptm/m/n/10 Two op-tional method names are in-ter-preted spe-cially, \T1/z
i4/m/n/10 initialize \T1/ptm/m/n/10 and
[1174] [1175] [1176] [1177] [1178]
Underfull \hbox (badness 1675) in paragraph at lines 6343--6349
\T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth
od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class
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                   \relax 
l.6820 \aliasA{S4}{S3Part}{S4}
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                   \relax 
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                   \relax 
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 the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor
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l.7102 \aliasA{Summary}{S4groupGeneric}{Summary}
                                                 [1189]
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[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
[1190] [1191] [1192]
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[]\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, 
a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal
ly
[1193] [1194] [1195] [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203]
[1204] [1205] [1206] [1207] [1208] [1209] [1210] [1211] [1212] [1213] [1214]
[1215] [1216] [1217] [1218] [1219] [1220] [1221] [1222] [1223] [1224] [1225]
[1226]
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[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1227] [1228] [1229] [1230]) (./parallel-pkg.tex
Chapter 8.

Underfull \hbox (badness 5490) in paragraph at lines 15--17
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4
/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[
][][]: see
[1231] [1232] [1233] [1234] [1235] [1236] [1237] [1238] [1239] [1240] [1241]
[1242] [1243] [1244] [1245] [1246] [1247] [1248] [1249] [1250]
Underfull \hbox (badness 3386) in paragraph at lines 1246--1249
[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R
andom.seed \T1/ptm/m/n/10 when the
[1251] [1252]) (./splines-pkg.tex
Chapter 9.

Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
[1253] [1254] [1255] [1256] [1257] [1258] [1259] [1260] [1261] [1262] [1263]
[1264] [1265] [1266] [1267]) (./stats-pkg.tex [1268]
Chapter 10.
[1269] [1270] [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279]
[1280] [1281]
Underfull \hbox (badness 1412) in paragraph at lines 844--846
[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm 
\T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for
[1282] [1283] [1284] [1285] [1286] [1287] [1288] [1289]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1290] [1291] [1292]
Underfull \hbox (badness 10000) in paragraph at lines 1504--1508
[]\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov", "lm") \T1/ptm/m/n/
10 or for mul-ti-ple re-sponses of class
[1293] [1294] [1295] [1296] [1297] [1298] [1299] [1300] [1301] [1302] [1303]
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[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
[1304] [1305] [1306] [1307] [1308]
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[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
[1309] [1310] [1311] [1312] [1313] [1314] [1315] [1316] [1317] [1318] [1319]
[1320] [1321]
Underfull \hbox (badness 2503) in paragraph at lines 3323--3326
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1322] [1323] [1324] [1325] [1326] [1327] [1328] [1329] [1330] [1331] [1332]
[1333] [1334] [1335] [1336] [1337] [1338] [1339] [1340] [1341]
Underfull \hbox (badness 3989) in paragraph at lines 4543--4550
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
[1342] [1343] [1344] [1345] [1346] [1347] [1348] [1349] [1350]
Underfull \hbox (badness 2556) in paragraph at lines 5142--5145
[]\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/
ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p
tm/m/n/10 . For

Underfull \hbox (badness 2932) in paragraph at lines 5159--5161
[]\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se-
quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is 
given by
[1351] [1352] [1353] [1354]
Underfull \hbox (badness 1142) in paragraph at lines 5400--5412
\T1/ptm/m/n/10 For \T1/zi4/m/n/10 cov()\T1/ptm/m/n/10 , a non-Pearson method is
 un-usual but avail-able for the sake of com-plete-ness.
[1355] [1356] [1357]
Underfull \hbox (badness 2503) in paragraph at lines 5539--5543
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,

Underfull \hbox (badness 1168) in paragraph at lines 5600--5605
[]\T1/ptm/m/n/10 For Spear-man's test, p-values are com-puted us-ing al-go-rith
m AS 89 for $\OML/cmm/m/it/10 n < \OT1/cmr/m/n/10 1290$ \T1/ptm/m/n/10 and
[1358] [1359] [1360] [1361] [1362] [1363] [1364] [1365]
Underfull \hbox (badness 8132) in paragraph at lines 6042--6047
\T1/ptm/m/n/10 then \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is a den-dro-gram of the sa
me graph struc-ture as \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and for each node,
[1366] [1367] [1368] [1369]
Underfull \hbox (badness 7081) in paragraph at lines 6317--6320
[]\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be
 con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method

Underfull \hbox (badness 10000) in paragraph at lines 6321--6323
[]\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra
m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also
[1370] [1371] [1372] [1373] [1374] [1375] [1376] [1377] [1378] [1379] [1380]
[1381] [1382]
Underfull \hbox (badness 10000) in paragraph at lines 7129--7132
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T
1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the
[1383] [1384]
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[]\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/zi4/m/n/10 ht
tp : / / cran . r-[]project . org / web / views /
[1385] [1386] [1387] [1388]
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[1401] [1402] [1403] [1404] [1405] [1406] [1407] [1408] [1409]
Underfull \hbox (badness 2626) in paragraph at lines 8764--8767
[]\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/
m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1410]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1411] [1412] [1413] [1414] [1415]
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[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Fligner-Killeen test of
 homogeneity of variances"\T1/ptm/m/n/10 . 
[1416] [1417] [1418] [1419] [1420] [1421] [1422] [1423] [1424] [1425]
Underfull \hbox (badness 1019) in paragraph at lines 9864--9867
[]\T1/ptm/m/n/10 See also [][]$\T1/zi4/m/n/10 http : / / en . wikipedia . org /
 wiki / Incomplete _ gamma _ function$[][]\T1/ptm/m/n/10 , or [][]$\T1/zi4/m/n/
10 http : / / dlmf .
[1426] [1427] [1428] [1429] [1430]
Underfull \hbox (badness 4518) in paragraph at lines 10125--10130
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1431] [1432] [1433] [1434]
Underfull \hbox (badness 2142) in paragraph at lines 10467--10470
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@
[1435]
Underfull \hbox (badness 1253) in paragraph at lines 10486--10489
[]\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][
]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it-
er-a-tion. Hence,
[1436]
Underfull \hbox (badness 1708) in paragraph at lines 10548--10552
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1437] [1438] [1439] [1440] [1441] [1442]
Underfull \hbox (badness 1694) in paragraph at lines 10944--10947
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to

Underfull \hbox (badness 1867) in paragraph at lines 10963--10972
\T1/ptm/m/n/10 in the row case. If ei-ther is miss-ing, as by de-fault, then th
e or-der-ing of the cor-re-
[1443] [1444] [1445] [1446] [1447] [1448] [1449] [1450]pdfTeX warning (ext4): d
estination with the same identifier (name{Rfn.hat}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.11410 \aliasA{hat}{influence.measures}{hat}
                                              [1451] [1452]
Underfull \hbox (badness 1484) in paragraph at lines 11533--11535
[]\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main
ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
[1453] [1454] [1455] [1456] [1457] [1458] [1459] [1460] [1461]
Underfull \hbox (badness 4441) in paragraph at lines 12091--12093
[]\T1/ptm/m/n/10 vector of dif-fer-enc-ing co-ef-fi-cients, so an ARMA model is
 fit-ted to

Underfull \hbox (badness 10000) in paragraph at lines 12098--12100
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa
ult[][][] \T1/ptm/m/n/10 when
[1462] [1463] [1464] [1465] [1466] [1467]
Underfull \hbox (badness 2894) in paragraph at lines 12432--12436
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
[1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475] [1476] [1477] [1478]
Underfull \hbox (badness 4518) in paragraph at lines 13127--13132
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1479] [1480] [1481] [1482] [1483] [1484] [1485] [1486] [1487] [1488]
Underfull \hbox (badness 4518) in paragraph at lines 13774--13779
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1489] [1490] [1491] [1492] [1493] [1494] [1495] [1496] [1497] [1498] [1499]
[1500] [1501] [1502] [1503] [1504] [1505] [1506] [1507] [1508]
Underfull \hbox (badness 2503) in paragraph at lines 14975--14979
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1509] [1510] [1511] [1512] [1513] [1514] [1515] [1516]
Underfull \hbox (badness 1418) in paragraph at lines 15484--15490
[]\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response 
\T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(, "offset") \T1
/ptm/m/n/10 and
[1517] [1518] [1519] [1520] [1521] [1522] [1523] [1524] [1525] [1526] [1527]
[1528] [1529] [1530] [1531] [1532] [1533] [1534] [1535] [1536] [1537] [1538]
[1539] [1540] [1541] [1542]
Underfull \hbox (badness 2359) in paragraph at lines 17108--17110
[]\T1/ptm/m/n/10 Douglas M. Bates and Saikat De-bRoy: David M. Gay for the For-
tran code used by
[1543] [1544]
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[1547] [1548] [1549] [1550] [1551] [1552] [1553] [1554] [1555] [1556] [1557]
[1558]
Underfull \hbox (badness 1377) in paragraph at lines 18019--18024
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

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[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

Underfull \hbox (badness 1184) in paragraph at lines 18037--18041
\T1/ptm/m/n/10 value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + reltol
) \T1/ptm/m/n/10 at a step. De-faults to

Underfull \hbox (badness 2662) in paragraph at lines 18045--18049
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt
m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \
T1/ptm/m/n/10 meth-ods if
[1559] [1560] [1561]
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[1563] [1564] [1565] [1566] [1567] [1568]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1569] [1570] [1571] [1572] [1573] [1574] [1575] [1576] [1577] [1578] [1579]
[1580] [1581]
Underfull \hbox (badness 5563) in paragraph at lines 19391--19393
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , add to al-read
y ex-ist-ing plot. Only valid for

Underfull \hbox (badness 1194) in paragraph at lines 19394--19397
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
[1582] [1583] [1584] [1585] [1586] [1587]
Underfull \hbox (badness 2503) in paragraph at lines 19761--19764
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1588]
Underfull \hbox (badness 10000) in paragraph at lines 19788--19790
[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1
/ptm/m/n/10 or
[1589] [1590] [1591] [1592] [1593] [1594] [1595] [1596] [1597] [1598] [1599]
[1600] [1601] [1602] [1603] [1604]
Underfull \hbox (badness 10000) in paragraph at lines 20788--20794
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][
][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 ,
[1605] [1606] [1607] [1608] [1609] [1610] [1611] [1612] [1613] [1614] [1615]
[1616] [1617] [1618] [1619] [1620] [1621] [1622] [1623] [1624] [1625] [1626]
[1627]
Underfull \hbox (badness 1337) in paragraph at lines 22123--22129
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1628] [1629] [1630] [1631] [1632] [1633] [1634] [1635] [1636] [1637] [1638]
[1639]
Underfull \hbox (badness 10000) in paragraph at lines 22916--22919
[]\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by
[1640] [1641] [1642] [1643] [1644] [1645] [1646] [1647] [1648]
Underfull \hbox (badness 10000) in paragraph at lines 23493--23496
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run
med(x, k) \T1/ptm/m/n/10 sim-ply has
[1649]
Underfull \hbox (badness 3690) in paragraph at lines 23544--23548
[][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's
 end point rule and is called by de-fault from
[1650] [1651] [1652] [1653] [1654]
Underfull \hbox (badness 7667) in paragraph at lines 23811--23813
[]\T1/ptm/m/n/10 a nu-meric vec-tor or an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-je
ct which is co-ercible to one by
[1655] [1656] [1657]
Underfull \hbox (badness 3439) in paragraph at lines 24014--24020
[][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSasympO
rig[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSbiexp[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 SSfol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSfpl[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 SSgompertz[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 SSlogis[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSmicmen[][][]\T1/ptm/m/n/1
0 ,
[1658] [1659] [1660] [1661] [1662] [1663] [1664] [1665] [1666]
Underfull \hbox (badness 10000) in paragraph at lines 24562--24567
[]\T1/ptm/m/n/10 integer or [][]\T1/zi4/m/n/10 function[][][] \T1/ptm/m/n/10 gi
v-ing the num-ber of knots to use when
[1667] [1668] [1669] [1670] [1671] [1672] [1673] [1674] [1675] [1676] [1677]
[1678] [1679] [1680] [1681]
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[1683]
Underfull \hbox (badness 3514) in paragraph at lines 25578--25583
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1684]
Underfull \hbox (badness 3514) in paragraph at lines 25640--25645
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1685]
Underfull \hbox (badness 3514) in paragraph at lines 25697--25702
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1686]
Underfull \hbox (badness 3514) in paragraph at lines 25758--25764
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1687] [1688] [1689] [1690]
Underfull \hbox (badness 3514) in paragraph at lines 25971--25976
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion

Underfull \hbox (badness 3514) in paragraph at lines 26027--26032
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1691]
Underfull \hbox (badness 3514) in paragraph at lines 26084--26089
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1692]
Underfull \hbox (badness 3514) in paragraph at lines 26139--26144
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1693] [1694]
Underfull \hbox (badness 6691) in paragraph at lines 26208--26213
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p
tm/m/n/10 . It is the value of the ex-pres-sion
[1695] [1696] [1697] [1698] [1699] [1700] [1701] [1702]
Underfull \hbox (badness 10000) in paragraph at lines 26732--26735
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-

Underfull \hbox (badness 10000) in paragraph at lines 26732--26735
\T1/ptm/m/n/10 trac-tion, which should be odd. If \T1/zi4/m/n/10 NULL\T1/ptm/m/
n/10 , the de-fault,
[1703] [1704] [1705] [1706] [1707] [1708] [1709] [1710] [1711] [1712]
Underfull \hbox (badness 5431) in paragraph at lines 27338--27340
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1713] [1714] [1715] [1716]
Underfull \hbox (badness 5431) in paragraph at lines 27548--27551
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1717] [1718] [1719] [1720] [1721]
Underfull \hbox (badness 1337) in paragraph at lines 27860--27864
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1722] [1723]
Underfull \hbox (badness 10000) in paragraph at lines 27977--27980
[]\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/
10 ; cur-rently ex-cept for \T1/zi4/m/n/10 rt()\T1/ptm/m/n/10 , only for
[1724] [1725] [1726]
Underfull \hbox (badness 1616) in paragraph at lines 28160--28163
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
[1727] [1728] [1729] [1730] [1731] [1732] [1733] [1734] [1735] [1736] [1737]
[1738] [1739] [1740] [1741] [1742] [1743] [1744] [1745]
Underfull \hbox (badness 10000) in paragraph at lines 29287--29291
[]\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z
i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect
[1746] [1747] [1748]
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[1750] [1751]
Underfull \hbox (badness 1337) in paragraph at lines 29651--29655
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1752] [1753] [1754] [1755] [1756] [1757] [1758] [1759]
Underfull \hbox (badness 1337) in paragraph at lines 30135--30139
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1760]
Underfull \hbox (badness 5161) in paragraph at lines 30228--30230
[]\T1/ptm/m/n/10 an es-ti-mate of the lo-ca-tion pa-ram-e-ter. (Only present if
 ar-gu-ment
[1761] [1762] [1763] [1764] [1765] [1766]
Underfull \hbox (badness 10000) in paragraph at lines 30592--30597
[]\T1/ptm/m/n/10 There is a \T1/zi4/m/n/10 summary \T1/ptm/m/n/10 method for co
n-tin-gency ta-ble ob-jects cre-ated by \T1/zi4/m/n/10 table \T1/ptm/m/n/10 or
[1767] [1768] [1769]) (./stats4-pkg.tex [1770]
Chapter 11.
[1771] [1772] [1773] [1774] [1775] [1776]pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup
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<to be read again> 
                   \relax 
l.407 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                   [1777] [1778] [1779]
[1780]) (./tcltk-pkg.tex
Chapter 12.
[1781] [1782] [1783] [1784] [1785] [1786] [1787]
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Underfull \vbox (badness 10000) has occurred while \output is active [1789]
Underfull \hbox (badness 1546) in paragraph at lines 664--671
[]\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing
 any Tk or Tcl com-mand by sim-ply run-ning
[1790] [1791] [1792] [1793] [1794] [1795] [1796] [1797] [1798] [1799] [1800]
Underfull \hbox (badness 3375) in paragraph at lines 1407--1410
[][][]\T1/zi4/m/n/10 select.list[][][] \T1/ptm/m/n/10 (a text ver-sion ex-cept 
on Win-dows and the OS X GUI), [][]\T1/zi4/m/n/10 menu[][][] \T1/ptm/m/n/10 (wh
ose
[1801]) (./tools-pkg.tex [1802]
Chapter 13.
[1803]

LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined
(Font)              using `T1/zi4/m/n' instead on input line 72.

[1804]
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[]\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b
e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
[1805] [1806]
Underfull \hbox (badness 1308) in paragraph at lines 285--298
[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types

Underfull \hbox (badness 4967) in paragraph at lines 285--298
\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe
ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

Underfull \hbox (badness 10000) in paragraph at lines 285--298
\T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee
dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 formatMastersthesis\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 285--298
\T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm
/m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma
tTechreport \T1/ptm/m/n/10 and
[1807] [1808]
Underfull \hbox (badness 3039) in paragraph at lines 389--391
[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine 
to use. Over-rides any
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Underfull \hbox (badness 1635) in paragraph at lines 1050--1052
[]\T1/ptm/m/n/10 Delete files in the tem-po-rary di-rec-tory? This op-tion is i
g-nored when
[1820]
Underfull \hbox (badness 4441) in paragraph at lines 1126--1136
\T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe
n-den-cies (de-
[1821]
Underfull \hbox (badness 1014) in paragraph at lines 1148--1150
[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

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[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a 
pre-vi-ous

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[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing


Overfull \hbox (15.52087pt too wide) in paragraph at lines 1185--1188
\T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z
i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 ,
[1822] [1823] [1824]
Underfull \hbox (badness 10000) in paragraph at lines 1348--1350
[]\T1/ptm/m/n/10 Re-save PDF files (es-pe-cially vi-gnettes) more com-pactly. S
up-port func-tion for
[1825] [1826] [1827]
Underfull \hbox (badness 7981) in paragraph at lines 1518--1522
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of

Underfull \hbox (badness 1082) in paragraph at lines 1524--1526
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see
[1828] [1829] [1830] [1831]pdfTeX warning (ext4): destination with the same ide
ntifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.1721 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
                                                   [1832] [1833]
Underfull \hbox (badness 5726) in paragraph at lines 1847--1852
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/n/10 TRUE
\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/n/10 De
pendsList \T1/ptm/m/n/10 ob-ject

Underfull \hbox (badness 7221) in paragraph at lines 1847--1852
\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
[1834] [1835] [1836] [1837] [1838] [1839] [1840] [1841]
Underfull \hbox (badness 7981) in paragraph at lines 2323--2329
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of
[1842] [1843] [1844] [1845]

LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
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[1846] [1847] [1848] [1849]
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[]\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t
or of links, as re-turned by
[1850] [1851] [1852] [1853] [1854] [1855] [1856] [1857] [1858] [1859] [1860]
Underfull \hbox (badness 10000) in paragraph at lines 3539--3541
[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
[1861] [1862] [1863] [1864] [1865] [1866]
Underfull \hbox (badness 1838) in paragraph at lines 3913--3919
[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The

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\T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file
[1867] [1868]
Underfull \hbox (badness 5726) in paragraph at lines 3993--3998
[]\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/sl/10 TR
UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/sl/10
 DependsList \T1/ptm/m/n/10 ob-ject

Underfull \hbox (badness 7221) in paragraph at lines 3993--3998
\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
[1869] [1870]
Underfull \hbox (badness 1688) in paragraph at lines 4136--4148
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to be used in the `\T
1/zi4/m/sl/10 PACKAGES\T1/ptm/m/n/10 ' and
[1871] [1872] [1873] [1874]) (./utils-pkg.tex
Chapter 14.
[1875]
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ',
[1876] [1877]
Underfull \hbox (badness 1454) in paragraph at lines 197--200
[]\T1/ptm/m/n/10 logical in-di-cat-ing if the search should be case-insensitive
, \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 by de-

Underfull \hbox (badness 1540) in paragraph at lines 213--216
[]\T1/zi4/m/sl/10 find \T1/ptm/m/n/10 is a dif-fer-ent user in-ter-face for the
 same task as \T1/zi4/m/sl/10 apropos\T1/ptm/m/n/10 . How-ever, by de-fault
[1878] [1879] [1880] [1881] [1882] [1883]
Underfull \hbox (badness 10000) in paragraph at lines 543--549
[]\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1
0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 ,

Underfull \hbox (badness 3343) in paragraph at lines 543--549
\T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel
l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the
[1884]
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[]\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to
 se-lect which of the pack-ages on the repos-i-to-

Underfull \hbox (badness 4229) in paragraph at lines 656--662
\T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi
4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as
[1885]
Underfull \hbox (badness 3861) in paragraph at lines 724--729
[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O
S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/
10 "License_is_FOSS"\T1/ptm/m/n/10 ,
[1886] [1887] [1888] [1889] [1890]
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[1892] [1893] [1894] [1895]
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
[1896] [1897] [1898] [1899] [1900] [1901] [1902]
Underfull \hbox (badness 2057) in paragraph at lines 1807--1809
[]\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th
is func-tion is in-voked for its side ef-fect of up-dat-ing
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/n/10 ar-gu-ment above. In the lat-ter case, the iden-tity
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[][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10
 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages
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10 ,
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[][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
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table[][][]\T1/ptm/m/n/10 ;
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[][][]$\T1/zi4/m/sl/10 http : / / en . wikipedia . org / wiki / Tar _ (file _ f
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org /

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This is `epsf.tex' v2.7.4 <14 February 2011>
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(/usr/share/texmf/tex/texinfo/txi-en.tex) [1{/var/lib/texmf/fonts/map/pdftex/up
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Cross reference values unknown; you must run TeX again. [1] Chapter 2 [2]
[3] [4] [5] [6] [7] [8]
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 @textrm (Wirtschaftsuniversit^^?at Wien,

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 @textrm (University of Mel-bourne,
[9] [10] Chapter 3 [11] [12] [13] [14] [15] [16] [17] [18] Chapter 4 [19]
[20] Chapter 5 [21] [22] [23] [24] [25] Chapter 6 [26] [27] Chapter 7 [28]
[29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42]
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Chapter 8 [43] Chapter 9 [44] [45] Chapter 10 [46] [47] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
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This is `epsf.tex' v2.7.4 <14 February 2011>
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Chapter 1 [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8]
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 @textrm (Wirtschaftsuniversit^^?at Wien,

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 @textrm (University of Mel-bourne,
[9] [10] Chapter 3 [11] [12] [13] [14] [15] [16] [17] [18] Chapter 4 [19]
[20] Chapter 5 [21] [22] [23] [24] [25] Chapter 6 [26] [27] Chapter 7 [28]
[29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42]
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@texttt download.file()[] @textrm func-tion), a down-load method is cho-sen bas
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 []@texttt options(download.file.method = "libcurl", url.method = "libcurl")   
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Chapter 8 [43] Chapter 9 [44] [45] Chapter 10 [46] [47] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
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Loading texinfo [version 2015-06-24.23]: pdf, fonts, markup, glyphs,
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This is `epsf.tex' v2.7.4 <14 February 2011>
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Chapter 1 [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8]
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 @textrm (Wirtschaftsuniversit^^?at Wien,

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 @textrm (University of Mel-bourne,
[9] [10] Chapter 3 [11] [12] [13] [14] [15] [16] [17] [18] Chapter 4 [19]
[20] Chapter 5 [21] [22] [23] [24] [25] Chapter 6 [26] [27] Chapter 7 [28]
[29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42]
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@texttt download.file()[] @textrm func-tion), a down-load method is cho-sen bas
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Chapter 8 [43] Chapter 9 [44] [45] Chapter 10 [46] [47] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
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Output written on R-FAQ.pdf (51 pages, 381861 bytes).
Transcript written on R-FAQ.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-admin.texi
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Loading texinfo [version 2015-06-24.23]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
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(./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1
[1] Chapter 2 [2] Cross reference values unknown; you must run TeX again.
[3] [4] [5] [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] [15] [16]
[17] [18] Chapter 4 [19] [20] [21] Chapter 5 [22] Chapter 6 [23]
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hods"[] 
[24] [25]
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[]@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age
s. No ad-di-
[26]
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[]@textrm The de-fault com-pil-ers spec-i-fied in @texttt /Library/Frameworks/R
.framework/Resources/etc/Makeconf[]
[27] [28] [29] [30]
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Chapter 7 [31] [32] [33] Chapter 8 [34] Chapter 9 [35] [36] [37] Appendix A
[38] [39] [40] [41] [42] [43] [44] [45] [46]
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 []@texttt ln -s /opt/acml5.1.0/gfortran64_mp/lib/libacml_mp.so @textttsl R_HOM
E@texttt /lib/libRblas.so[] 
[47] [48] Appendix B [49] [50] [51] [52] [53] [54] [55] Appendix C [56]
[57] [58] [59] [60] [61] [62]
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[63] [64]
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[65]
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[]@textrm To see what com-pat-i-ble ver-sions of Java are cur-rently in-stalled
, run

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/Home[] 

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tents/Home[] 
[66] [67]
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@texttt LDFLAGS=-L/usr/local/lib/sparcv9[] @textrm or @texttt LDFLAGS=-L/usr/lo
cal/lib/amd64[] @textrm as

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onfig[] 

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 []@texttt JAVA_CPPFLAGS="-I${JAVA_HOME}/../include -I${JAVA_HOME}/../include/s
olaris"[] 
[68] [69] [70] [71] [72] [73] Appendix D [74] [75] [76]
(Function and variable index) [77] (Concept index) [78]
(Environment variable index) [79] [80] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
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Loading texinfo [version 2015-06-24.23]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
(./R-admin.aux) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex))
(./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}]
[2] (./R-admin.toc [-1] [-2]) [-3] [-4] (./R-admin.toc) (./R-admin.toc)
Chapter 1 [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] Chapter 3
[12] [13] [14] [15] [16] [17] [18] Chapter 4 [19] [20] [21] Chapter 5 [22]
Chapter 6 [23]
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hods"[] 
[24] [25]
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[]@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age
s. No ad-di-
[26]
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[]@textrm The de-fault com-pil-ers spec-i-fied in @texttt /Library/Frameworks/R
.framework/Resources/etc/Makeconf[]
[27] [28] [29] [30]
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nstall=check:@textttsl pkg@texttt .log @textttsl pkg[] 
Chapter 7 [31] [32] [33] Chapter 8 [34] Chapter 9 [35] [36] [37] Appendix A
[38] [39] [40] [41] [42] [43] [44] [45] [46]
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 []@texttt ln -s /opt/acml5.1.0/gfortran64_mp/lib/libacml_mp.so @textttsl R_HOM
E@texttt /lib/libRblas.so[] 
[47] [48] Appendix B [49] [50] [51] [52] [53] [54] [55] Appendix C [56]
[57] [58] [59] [60] [61] [62]
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[]@textrm To see what com-pat-i-ble ver-sions of Java are cur-rently in-stalled
, run

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/Home[] 

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tents/Home[] 
[66] [67]
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 []@texttt JAVA_CPPFLAGS="-I${JAVA_HOME}/../include -I${JAVA_HOME}/../include/s
olaris"[] 
[68] [69] [70] [71] [72] [73] Appendix D [74] [75] [76]
(Function and variable index) [77] (./R-admin.vrs) (Concept index) [78]
(./R-admin.cps) (Environment variable index) [79] (./R-admin.ens) [80] )
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[2] (./R-admin.toc [-1] [-2]) [-3] [-4] (./R-admin.toc) (./R-admin.toc)
Chapter 1 [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] Chapter 3
[12] [13] [14] [15] [16] [17] [18] Chapter 4 [19] [20] [21] Chapter 5 [22]
Chapter 6 [23]
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 []@texttt [1] "datasets"  "utils"     "grDevices" "graphics"  "stats"     "met
hods"[] 
[24] [25]
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[]@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age
s. No ad-di-
[26]
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[]@textrm The de-fault com-pil-ers spec-i-fied in @texttt /Library/Frameworks/R
.framework/Resources/etc/Makeconf[]
[27] [28] [29] [30]
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tt --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] 

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 []@texttt .../bin/x64/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --i
nstall=check:@textttsl pkg@texttt .log @textttsl pkg[] 
Chapter 7 [31] [32] [33] Chapter 8 [34] Chapter 9 [35] [36] [37] Appendix A
[38] [39] [40] [41] [42] [43] [44] [45] [46]
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 []@texttt ln -s /opt/acml5.1.0/gfortran64_mp/lib/libacml_mp.so @textttsl R_HOM
E@texttt /lib/libRblas.so[] 
[47] [48] Appendix B [49] [50] [51] [52] [53] [54] [55] Appendix C [56]
[57] [58] [59] [60] [61] [62]
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ig:/usr/lib/pkgconfig[] 
[63] [64]
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[65]
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[]@textrm To see what com-pat-i-ble ver-sions of Java are cur-rently in-stalled
, run

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/Home[] 

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[66] [67]
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@texttt LDFLAGS=-L/usr/local/lib/sparcv9[] @textrm or @texttt LDFLAGS=-L/usr/lo
cal/lib/amd64[] @textrm as

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onfig[] 

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 []@texttt JAVA_CPPFLAGS="-I${JAVA_HOME}/../include -I${JAVA_HOME}/../include/s
olaris"[] 
[68] [69] [70] [71] [72] [73] Appendix D [74] [75] [76]
(Function and variable index) [77] (./R-admin.vrs) (Concept index) [78]
(./R-admin.cps) (Environment variable index) [79] (./R-admin.ens) [80] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
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msfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
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(Acknowledgements)
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[1] [2] Chapter 1 [3] Cross reference values unknown; you must run TeX again.
[4] [5] [6] [7] Chapter 2 [8] [9] [10] [11] [12] [13] [14] Chapter 3 [15]
[16] Chapter 4 [17] [18] [19] [20] [21] [22] [23] Chapter 5 [24] Chapter 6
[25] Chapter 7 [26] [27] [28] [29] [30] Chapter 8 [31] Chapter 9 [32]
Appendix A [33] (Function and variable index) [34] (Concept index) [35]
[36] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
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lic/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
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[1] [2] Chapter 1 [3] [4] [5] [6] [7] Chapter 2 [8] [9] [10] [11] [12] [13]
[14] Chapter 3 [15] [16] Chapter 4 [17] [18] [19] [20] [21] [22] [23]
Chapter 5 [24] Chapter 6 [25] Chapter 7 [26] [27] [28] [29] [30] Chapter 8
[31] Chapter 9 [32] Appendix A [33] (Function and variable index) [34]
(./R-data.vrs [35]) (Concept index) [36] (./R-data.cps) [37] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
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[1] [2] Chapter 1 [3] [4] [5] [6] [7] Chapter 2 [8] [9] [10] [11] [12] [13]
[14] Chapter 3 [15] [16] Chapter 4 [17] [18] [19] [20] [21] [22] [23]
Chapter 5 [24] Chapter 6 [25] Chapter 7 [26] [27] [28] [29] [30] Chapter 8
[31] Chapter 9 [32] Appendix A [33] (Function and variable index) [34]
(./R-data.vrs [35]) (Concept index) [36] (./R-data.cps) [37] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
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(Acknowledgements) Chapter 1 [1]
Cross reference values unknown; you must run TeX again. [2] [3] [4] [5]
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[]@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t
exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo
[]@textrm '[] and
[6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21]
[22] [23]
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PACK rou-tines

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LAGS)[] 
[24] [25] [26] [27]
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[28] [29]
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e defined.[]  
[30] [31] [32]
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[][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v
er-sions such as @smalltt ~/.R/check.Renviron.i386[]
[33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47]
[48] [49] [50] [51] [52] [53] [54] [55] [56]
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euro"[] 
[57] [58] [59] [60]
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[61] [62] [63] Chapter 2 [64] [65] [66] [67] [68] [69] [70] [71] [72] [73]
[74] [75] [76] [77]
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[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[78] [79] [80] [81]
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[]@textrm As of R ver-sion 3.2.0, a num-ber of macros are de-fined in the file
[82] [83] Chapter 3 [84] [85] [86] [87] [88] [89]
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[90] [91] [92] Chapter 4 [93] [94] [95]
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ns=)?[] 
[96]
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e supply starting values[] 
[97]
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[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
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[98] [99] [100] [101] [102] [103]
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exttt -fsanitize=undefined,address[]@textrm . 
[104]
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[105]
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[106]
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698f98,[] 
[107] [108] [109] Chapter 5 [110] [111] [112] [113] [114] [115] [116] [117]
[118] [119] [120] [121] [122]
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" -lpackB[] 
[123] [124] [125] [126] [127] [128] [129] [130] [131] [132]
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[133]
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[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[134] [135] [136] [137] [138] [139]
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orry"[] 
[140] [141]
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 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 
[142]
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 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 

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a)));[] 

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s)) {[] 
[143] [144] [145]
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 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one
xit);[] 
[146]
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[147] [148]
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 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_SYMBOL, CE_ANY} cety
pe_t;[] 
Chapter 6 [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159]
[160] [161] [162] [163] [164] [165] [166] [167] [168] Chapter 7 [169] [170]
Chapter 8 [171] [172] [173]
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 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s
tatic libR[] 
[174]
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 []@texttt extern int  (*ptr_R_ReadConsole)(const char *, unsigned char *, int,
 int);[] 

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 []@texttt extern int  (*ptr_R_EditFiles)(int, const char **, const char **, co
nst char *);[] 
[175] [176] [177]
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 @texttt modules/internet/nanoftp.c[]@textrm , @texttt src/modules/internet/nan
ohttp.c[] @textrm and @texttt src/
[178] [179] [180] [181] [182] [183]
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 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R
-core\R32[] @textrm or

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(Function and variable index) [184] (Concept index) [185] [186] )
(see the transcript file for additional information) </home/buildd/.texmf-var/f
onts/pk/ljfour/jknappen/ec/ecrm1095.603pk></usr/share/texlive/texmf-dist/fonts/
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r/share/texlive/texmf-dist/fonts/type1/public/amsfonts/latxfont/lcircle1.pfb>
Output written on R-exts.pdf (189 pages, 834631 bytes).
Transcript written on R-exts.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdfetex)
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entering extended mode
(/«PKGBUILDDIR»/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2015-06-24.23]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-exts.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-exts.toc
[-1] [-2] [-3] [-4]) [-5] (./R-exts.toc) (./R-exts.toc) (Acknowledgements)
Chapter 1 [1] [2] [3] [4] [5]
Underfull \hbox (badness 10000) in paragraph at lines 494--497
[]@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t
exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo
[]@textrm '[] and
[6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21]
[22] [23]
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 []@textrm [@texttt libRlapack[] @textrm in-cludes all the double-precision LA-
PACK rou-tines

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 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF
LAGS)[] 
[24] [25] [26] [27]
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 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 

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 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[28] [29]
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 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar
e defined.[]  
[30] [31] [32]
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[][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v
er-sions such as @smalltt ~/.R/check.Renviron.i386[]
[33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47]
[48] [49] [50] [51] [52] [53] [54] [55] [56]
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 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@
euro"[] 
[57] [58] [59] [60]
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 []@texttt #define dngettext(pkg, String, StringP, N) (N > 1 ? StringP : String
)[] 
[61] [62] [63] Chapter 2 [64] [65] [66] [67] [68] [69] [70] [71] [72] [73]
[74] [75] [76] [77]
Underfull \hbox (badness 10000) in paragraph at lines 5975--5982
[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[78] [79] [80] [81]
Underfull \hbox (badness 10000) in paragraph at lines 6294--6298
[]@textrm As of R ver-sion 3.2.0, a num-ber of macros are de-fined in the file
[82] [83] Chapter 3 [84] [85] [86] [87] [88] [89]
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 []                 @texttt as.integer(runif(N, 1, 12)), as.integer(runif(N, 1,
 28)))[] 
[90] [91] [92] Chapter 4 [93] [94] [95]
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 []@texttt evaluation nested too deeply: infinite recursion / options(expressio
ns=)?[] 
[96]
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 []@smalltt Message:  Error: no valid set of coefficients has been found: pleas
e supply starting values[] 
[97]
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 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star
t, etastart = etastart,[] 

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[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g. @texttt debug(stats:::predict.Arima)[]@textrm .
[98] [99] [100] [101] [102] [103]
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[]@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by @t
exttt -fsanitize=undefined,address[]@textrm . 
[104]
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 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u
pper bound of 0[] 
[105]
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 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl
assi,[] 

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 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t(
cu)),[] 
[106]
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 []@texttt #5  0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9
698f98,[] 
[107] [108] [109] Chapter 5 [110] [111] [112] [113] [114] [115] [116] [117]
[118] [119] [120] [121] [122]
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 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[123] [124] [125] [126] [127] [128] [129] [130] [131] [132]
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 []    @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL
SE");[] 
[133]
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[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[134] [135] [136] [137] [138] [139]
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 []    @texttt // a version with (too) much PROTECT()ion .. "better safe than s
orry"[] 
[140] [141]
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 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 
[142]
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 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 

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 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 

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 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 
[143] [144] [145]
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 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one
xit);[] 
[146]
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 []    @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
NilValue);[] 
[147] [148]
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 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_SYMBOL, CE_ANY} cety
pe_t;[] 
Chapter 6 [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159]
[160] [161] [162] [163] [164] [165] [166] [167] [168] Chapter 7 [169] [170]
Chapter 8 [171] [172] [173]
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 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s
tatic libR[] 
[174]
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 []@texttt extern int  (*ptr_R_ReadConsole)(const char *, unsigned char *, int,
 int);[] 

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 []@texttt extern int  (*ptr_R_EditFiles)(int, const char **, const char **, co
nst char *);[] 
[175] [176] [177]
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 @texttt modules/internet/nanoftp.c[]@textrm , @texttt src/modules/internet/nan
ohttp.c[] @textrm and @texttt src/
[178] [179] [180] [181] [182] [183]
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 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R
-core\R32[] @textrm or
(Function and variable index) [184] (./R-exts.vrs [185] [186] [187])
(Concept index) [188] (./R-exts.cps [189]) [190] )
(see the transcript file for additional information) </home/buildd/.texmf-var/f
onts/pk/ljfour/jknappen/ec/ecrm1095.603pk></usr/share/texlive/texmf-dist/fonts/
type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/
amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfon
ts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/
cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi9.p
fb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></us
r/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/
texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texlive/
texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/texmf-di
st/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/fonts/t
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s/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
mti9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.p
fb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb></usr/shar
e/texlive/texmf-dist/fonts/type1/public/amsfonts/latxfont/lcircle1.pfb>
Output written on R-exts.pdf (197 pages, 896223 bytes).
Transcript written on R-exts.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/«PKGBUILDDIR»/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2015-06-24.23]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-exts.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-exts.toc
[-1] [-2] [-3] [-4]) [-5] (./R-exts.toc) (./R-exts.toc) (Acknowledgements)
Chapter 1 [1] [2] [3] [4] [5]
Underfull \hbox (badness 10000) in paragraph at lines 494--497
[]@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t
exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo
[]@textrm '[] and
[6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21]
[22] [23]
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 []@textrm [@texttt libRlapack[] @textrm in-cludes all the double-precision LA-
PACK rou-tines

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 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF
LAGS)[] 
[24] [25] [26] [27]
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 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 

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 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[28] [29]
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 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar
e defined.[]  
[30] [31] [32]
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[][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v
er-sions such as @smalltt ~/.R/check.Renviron.i386[]
[33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47]
[48] [49] [50] [51] [52] [53] [54] [55] [56]
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 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@
euro"[] 
[57] [58] [59] [60]
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 []@texttt #define dngettext(pkg, String, StringP, N) (N > 1 ? StringP : String
)[] 
[61] [62] [63] Chapter 2 [64] [65] [66] [67] [68] [69] [70] [71] [72] [73]
[74] [75] [76] [77]
Underfull \hbox (badness 10000) in paragraph at lines 5975--5982
[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[78] [79] [80] [81]
Underfull \hbox (badness 10000) in paragraph at lines 6294--6298
[]@textrm As of R ver-sion 3.2.0, a num-ber of macros are de-fined in the file
[82] [83] Chapter 3 [84] [85] [86] [87] [88] [89]
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 []                 @texttt as.integer(runif(N, 1, 12)), as.integer(runif(N, 1,
 28)))[] 
[90] [91] [92] Chapter 4 [93] [94] [95]
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 []@texttt evaluation nested too deeply: infinite recursion / options(expressio
ns=)?[] 
[96]
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 []@smalltt Message:  Error: no valid set of coefficients has been found: pleas
e supply starting values[] 
[97]
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 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star
t, etastart = etastart,[] 

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[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g. @texttt debug(stats:::predict.Arima)[]@textrm .
[98] [99] [100] [101] [102] [103]
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[]@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by @t
exttt -fsanitize=undefined,address[]@textrm . 
[104]
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 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u
pper bound of 0[] 
[105]
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 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl
assi,[] 

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 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t(
cu)),[] 
[106]
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 []@texttt #5  0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9
698f98,[] 
[107] [108] [109] Chapter 5 [110] [111] [112] [113] [114] [115] [116] [117]
[118] [119] [120] [121] [122]
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 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[123] [124] [125] [126] [127] [128] [129] [130] [131] [132]
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 []    @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL
SE");[] 
[133]
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[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[134] [135] [136] [137] [138] [139]
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 []    @texttt // a version with (too) much PROTECT()ion .. "better safe than s
orry"[] 
[140] [141]
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 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 
[142]
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 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 

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 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 

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 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 
[143] [144] [145]
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 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one
xit);[] 
[146]
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 []    @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
NilValue);[] 
[147] [148]
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 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_SYMBOL, CE_ANY} cety
pe_t;[] 
Chapter 6 [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159]
[160] [161] [162] [163] [164] [165] [166] [167] [168] Chapter 7 [169] [170]
Chapter 8 [171] [172] [173]
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 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s
tatic libR[] 
[174]
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 []@texttt extern int  (*ptr_R_ReadConsole)(const char *, unsigned char *, int,
 int);[] 

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 []@texttt extern int  (*ptr_R_EditFiles)(int, const char **, const char **, co
nst char *);[] 
[175] [176] [177]
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 @texttt modules/internet/nanoftp.c[]@textrm , @texttt src/modules/internet/nan
ohttp.c[] @textrm and @texttt src/
[178] [179] [180] [181] [182] [183]
Underfull \hbox (badness 10000) in paragraph at lines 13925--13929
 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R
-core\R32[] @textrm or
(Function and variable index) [184] (./R-exts.vrs [185] [186] [187])
(Concept index) [188] (./R-exts.cps [189]) [190] )
(see the transcript file for additional information) </home/buildd/.texmf-var/f
onts/pk/ljfour/jknappen/ec/ecrm1095.603pk></usr/share/texlive/texmf-dist/fonts/
type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
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ts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/
cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi9.p
fb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></us
r/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/
texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texlive/
texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/texmf-di
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sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb></usr/shar
e/texlive/texmf-dist/fonts/type1/public/amsfonts/latxfont/lcircle1.pfb>
Output written on R-exts.pdf (197 pages, 896222 bytes).
Transcript written on R-exts.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdfetex)
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entering extended mode
(/«PKGBUILDDIR»/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2015-06-24.23]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-exts.aux
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[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-exts.toc
[-1] [-2] [-3] [-4]) [-5] (./R-exts.toc) (./R-exts.toc) (Acknowledgements)
Chapter 1 [1] [2] [3] [4] [5]
Underfull \hbox (badness 10000) in paragraph at lines 494--497
[]@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t
exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo
[]@textrm '[] and
[6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21]
[22] [23]
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 []@textrm [@texttt libRlapack[] @textrm in-cludes all the double-precision LA-
PACK rou-tines

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 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF
LAGS)[] 
[24] [25] [26] [27]
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 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 

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 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[28] [29]
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 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar
e defined.[]  
[30] [31] [32]
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[][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v
er-sions such as @smalltt ~/.R/check.Renviron.i386[]
[33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47]
[48] [49] [50] [51] [52] [53] [54] [55] [56]
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 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@
euro"[] 
[57] [58] [59] [60]
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 []@texttt #define dngettext(pkg, String, StringP, N) (N > 1 ? StringP : String
)[] 
[61] [62] [63] Chapter 2 [64] [65] [66] [67] [68] [69] [70] [71] [72] [73]
[74] [75] [76] [77]
Underfull \hbox (badness 10000) in paragraph at lines 5975--5982
[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[78] [79] [80] [81]
Underfull \hbox (badness 10000) in paragraph at lines 6294--6298
[]@textrm As of R ver-sion 3.2.0, a num-ber of macros are de-fined in the file
[82] [83] Chapter 3 [84] [85] [86] [87] [88] [89]
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 []                 @texttt as.integer(runif(N, 1, 12)), as.integer(runif(N, 1,
 28)))[] 
[90] [91] [92] Chapter 4 [93] [94] [95]
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 []@texttt evaluation nested too deeply: infinite recursion / options(expressio
ns=)?[] 
[96]
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 []@smalltt Message:  Error: no valid set of coefficients has been found: pleas
e supply starting values[] 
[97]
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 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star
t, etastart = etastart,[] 

Overfull \hbox (38.96663pt too wide) in paragraph at lines 7443--7452
[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g. @texttt debug(stats:::predict.Arima)[]@textrm .
[98] [99] [100] [101] [102] [103]
Overfull \hbox (32.54903pt too wide) in paragraph at lines 7857--7859
[]@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by @t
exttt -fsanitize=undefined,address[]@textrm . 
[104]
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 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u
pper bound of 0[] 
[105]
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 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl
assi,[] 

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 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t(
cu)),[] 
[106]
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 []@texttt #5  0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9
698f98,[] 
[107] [108] [109] Chapter 5 [110] [111] [112] [113] [114] [115] [116] [117]
[118] [119] [120] [121] [122]
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 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[123] [124] [125] [126] [127] [128] [129] [130] [131] [132]
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 []    @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL
SE");[] 
[133]
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[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[134] [135] [136] [137] [138] [139]
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 []    @texttt // a version with (too) much PROTECT()ion .. "better safe than s
orry"[] 
[140] [141]
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 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 
[142]
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 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 

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 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 

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 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 
[143] [144] [145]
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 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one
xit);[] 
[146]
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 []    @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
NilValue);[] 
[147] [148]
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 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_SYMBOL, CE_ANY} cety
pe_t;[] 
Chapter 6 [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159]
[160] [161] [162] [163] [164] [165] [166] [167] [168] Chapter 7 [169] [170]
Chapter 8 [171] [172] [173]
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 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s
tatic libR[] 
[174]
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 []@texttt extern int  (*ptr_R_ReadConsole)(const char *, unsigned char *, int,
 int);[] 

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 []@texttt extern int  (*ptr_R_EditFiles)(int, const char **, const char **, co
nst char *);[] 
[175] [176] [177]
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 @texttt modules/internet/nanoftp.c[]@textrm , @texttt src/modules/internet/nan
ohttp.c[] @textrm and @texttt src/
[178] [179] [180] [181] [182] [183]
Underfull \hbox (badness 10000) in paragraph at lines 13925--13929
 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R
-core\R32[] @textrm or
(Function and variable index) [184] (./R-exts.vrs [185] [186] [187])
(Concept index) [188] (./R-exts.cps [189]) [190] )
(see the transcript file for additional information) </home/buildd/.texmf-var/f
onts/pk/ljfour/jknappen/ec/ecrm1095.603pk></usr/share/texlive/texmf-dist/fonts/
type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/
amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfon
ts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/
cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi9.p
fb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></us
r/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/
texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texlive/
texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/texmf-di
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amsfonts/cm/cmsy7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
mti9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.p
fb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb></usr/shar
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Transcript written on R-exts.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-intro.texi
This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdfetex)
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(/«PKGBUILDDIR»/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2015-06-24.23]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
(./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Preface)
Cross reference values unknown; you must run TeX again. Chapter 1 [1] [2]
[3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14]
Chapter 4 [15] [16] [17] Chapter 5 [18] [19] [20] [21] [22] [23] [24] [25]
[26] Chapter 6 [27] [28] [29] [30] Chapter 7 [31] [32] [33] Chapter 8 [34]
[35] [36] <./images/hist.pdf> <./images/ecdf.pdf> [37] <./images/QQ.pdf>
[38] <./images/ice.pdf> [39] [40] Chapter 9 [41] [42] Chapter 10 [43] [44]
[45] [46] [47] [48] [49] [50] [51] [52] Chapter 11 [53] [54] [55] [56] [57]
[58] [59] [60] [61] [62] [63] [64] [65] Chapter 12 [66] [67] [68] [69] [70]
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[77] [78] [79] [80] Chapter 13 [81]
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[82] Chapter 14 [83] [84]
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[85] Appendix A [86] [87] [88] [89] Appendix B [90] [91] [92] [93] [94]
[95] [96] [97] Appendix C [98] [99] Appendix D [100] Appendix E [101]
Appendix F [102] [103] )
(see the transcript file for additional information) </home/buildd/.texmf-var/f
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[2] (./R-intro.toc [-1] [-2] [-3]) [-4] (./R-intro.toc) (./R-intro.toc)
(Preface) Chapter 1 [1] [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11]
Chapter 3 [12] [13] [14] Chapter 4 [15] [16] [17] Chapter 5 [18] [19] [20]
[21] [22] [23] [24] [25] [26] Chapter 6 [27] [28] [29] [30] Chapter 7 [31]
[32] [33] Chapter 8 [34] [35] [36] <./images/hist.pdf> <./images/ecdf.pdf>
[37] <./images/QQ.pdf> [38] <./images/ice.pdf> [39] [40] Chapter 9 [41]
[42] Chapter 10 [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] Chapter 11
[53] [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] Chapter 12
[66] [67] [68] [69] [70]
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[71] [72] [73] [74] [75] <./images/fig11.pdf> [76] <./images/fig12.pdf>
[77] [78] [79] [80] Chapter 13 [81]
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[82] Chapter 14 [83] [84]
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[85] Appendix A [86] [87] [88] [89] Appendix B [90] [91] [92] [93] [94]
[95] [96] [97] Appendix C [98] [99] Appendix D [100] (./R-intro.vrs [101]
[102]) Appendix E [103] (./R-intro.cps [104]) Appendix F [105] [106] )
(see the transcript file for additional information) </home/buildd/.texmf-var/f
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[2] (./R-intro.toc [-1] [-2] [-3]) [-4] (./R-intro.toc) (./R-intro.toc)
(Preface) Chapter 1 [1] [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11]
Chapter 3 [12] [13] [14] Chapter 4 [15] [16] [17] Chapter 5 [18] [19] [20]
[21] [22] [23] [24] [25] [26] Chapter 6 [27] [28] [29] [30] Chapter 7 [31]
[32] [33] Chapter 8 [34] [35] [36] <./images/hist.pdf> <./images/ecdf.pdf>
[37] <./images/QQ.pdf> [38] <./images/ice.pdf> [39] [40] Chapter 9 [41]
[42] Chapter 10 [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] Chapter 11
[53] [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] Chapter 12
[66] [67] [68] [69] [70]
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[71] [72] [73] [74] [75] <./images/fig11.pdf> [76] <./images/fig12.pdf>
[77] [78] [79] [80] Chapter 13 [81]
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[82] Chapter 14 [83] [84]
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[85] Appendix A [86] [87] [88] [89] Appendix B [90] [91] [92] [93] [94]
[95] [96] [97] Appendix C [98] [99] Appendix D [100] (./R-intro.vrs [101]
[102]) Appendix E [103] (./R-intro.cps [104]) Appendix F [105] [106] )
(see the transcript file for additional information) </home/buildd/.texmf-var/f
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(./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1
[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17]
[18] [19] [20] [21] [22] [23] Chapter 2 [24] [25]
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[26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34]
Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47]
Chapter 7 [48]
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@texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib/libR.dyl
ib[]@textrm ,
[49] Chapter 8 [50] [51] [52] [53] [54] [55] [56] Chapter 9 [57] [58]
Chapter 10 [59] Chapter 11 [60] Chapter 12 [61] [62]
(Function and variable index) [63] [64] (Concept index) [65] [66] )
(see the transcript file for additional information) </home/buildd/.texmf-var/f
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[-1] [-2]) [-3] (./R-ints.toc) (./R-ints.toc) Chapter 1 [1] [2] [3] [4]
[5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20]
[21] [22] [23] Chapter 2 [24] [25]
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[26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34]
Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47]
Chapter 7 [48]
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@texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib/libR.dyl
ib[]@textrm ,
[49] Chapter 8 [50] [51] [52] [53] [54] [55] [56] Chapter 9 [57] [58]
Chapter 10 [59] Chapter 11 [60] Chapter 12 [61] [62]
(Function and variable index) [63] [64] (./R-ints.vrs [65]) (Concept index)
[66] (./R-ints.cps) [67] )
(see the transcript file for additional information) </home/buildd/.texmf-var/f
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[-1] [-2]) [-3] (./R-ints.toc) (./R-ints.toc) Chapter 1 [1] [2] [3] [4]
[5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20]
[21] [22] [23] Chapter 2 [24] [25]
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[26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34]
Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47]
Chapter 7 [48]
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@textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a 
sym-bolic link,

Underfull \hbox (badness 10000) in paragraph at lines 3617--3626
@texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib/libR.dyl
ib[]@textrm ,
[49] Chapter 8 [50] [51] [52] [53] [54] [55] [56] Chapter 9 [57] [58]
Chapter 10 [59] Chapter 11 [60] Chapter 12 [61] [62]
(Function and variable index) [63] [64] (./R-ints.vrs [65]) (Concept index)
[66] (./R-ints.cps) [67] )
(see the transcript file for additional information) </home/buildd/.texmf-var/f
onts/pk/ljfour/jknappen/ec/ecrm1095.603pk></usr/share/texlive/texmf-dist/fonts/
type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/
amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfon
ts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/
cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.p
fb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr
/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/t
exmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/
fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fonts/
type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/
public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public
/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfo
nts/cm/cmtt9.pfb>
Output written on R-ints.pdf (72 pages, 431115 bytes).
Transcript written on R-ints.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-lang.texi
This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/«PKGBUILDDIR»/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2015-06-24.23]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
(./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1
Chapter 2 [1] [2] Cross reference values unknown; you must run TeX again.
Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294
 @textbf storage.mode| 
[3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16]
[17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] [28]
Chapter 5 [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39]
[40] [41] [42] [43] Chapter 7 [44] [45] Chapter 8 [46] [47] Chapter 9 [48]
[49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58]
(Function and Variable Index) [59] (Concept Index) [60] Appendix A [61]
[62] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
fonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm
/cmr9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.
pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy9.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-lang.pdf (65 pages, 331051 bytes).
Transcript written on R-lang.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/«PKGBUILDDIR»/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2015-06-24.23]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-lang.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-lang.toc
[-1] [-2]) [-3] (./R-lang.toc) (./R-lang.toc) Chapter 1 Chapter 2 [1] [2]
Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294
 @textbf storage.mode| 
[3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16]
[17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] [28]
Chapter 5 [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39]
[40] [41] [42] [43] Chapter 7 [44] [45] Chapter 8 [46] [47] Chapter 9 [48]
[49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58]
(Function and Variable Index) [59] (./R-lang.vrs [60]) (Concept Index) [61]
(./R-lang.cps) Appendix A [62] [63] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/sha
re/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/
fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-lang.pdf (68 pages, 379642 bytes).
Transcript written on R-lang.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/«PKGBUILDDIR»/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2015-06-24.23]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-lang.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-lang.toc
[-1] [-2]) [-3] (./R-lang.toc) (./R-lang.toc) Chapter 1 Chapter 2 [1] [2]
Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294
 @textbf storage.mode| 
[3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16]
[17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] [28]
Chapter 5 [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39]
[40] [41] [42] [43] Chapter 7 [44] [45] Chapter 8 [46] [47] Chapter 9 [48]
[49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58]
(Function and Variable Index) [59] (./R-lang.vrs [60]) (Concept Index) [61]
(./R-lang.cps) Appendix A [62] [63] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/sha
re/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/
fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-lang.pdf (68 pages, 379645 bytes).
Transcript written on R-lang.log.
installing R manuals in PDF format ...
make[2]: Leaving directory '/«PKGBUILDDIR»/doc/manual'
make[1]: Leaving directory '/«PKGBUILDDIR»'
make		prefix=/«PKGBUILDDIR»/debian/r-base-core/usr  \
		infodir=/«PKGBUILDDIR»/debian/r-base-core/usr/share/info	install-info
make[1]: Entering directory '/«PKGBUILDDIR»'
make[2]: Entering directory '/«PKGBUILDDIR»/doc/manual'
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-FAQ.texi
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-admin.texi
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-data.texi
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-exts.texi
R-exts.texi:5500: warning: `.' or `,' must follow @xref, not )
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-intro.texi
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-ints.texi
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-lang.texi
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/info
/usr/bin/install -c -m 644 "./dir" "/«PKGBUILDDIR»/debian/r-base-core/usr/share/info"
installing R info pages ...
updating '/«PKGBUILDDIR»/debian/r-base-core/usr/share/info/dir' ...
you need to adjust /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/dir manually
you need to adjust /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/dir manually
you need to adjust /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/dir manually
you need to adjust /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/dir manually
you need to adjust /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/dir manually
you need to adjust /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/dir manually
you need to adjust /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/dir manually
make[2]: Leaving directory '/«PKGBUILDDIR»/doc/manual'
make[1]: Leaving directory '/«PKGBUILDDIR»'
dh_movefiles	--sourcedir=debian/r-base-core -pr-doc-pdf
dh_movefiles	--sourcedir=debian/r-base-core -pr-doc-html
touch install-indep-stamp
gunzip -9v /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/*.gz
/«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-FAQ.info.gz:	 67.0% -- replaced with /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-FAQ.info
/«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-admin.info.gz:	 68.3% -- replaced with /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-admin.info
/«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-data.info.gz:	 70.6% -- replaced with /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-data.info
/«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-exts.info-1.gz:	 66.8% -- replaced with /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-exts.info-1
/«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-exts.info-2.gz:	 70.8% -- replaced with /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-exts.info-2
/«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-exts.info.gz:	 67.9% -- replaced with /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-exts.info
/«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-intro.info.gz:	 70.0% -- replaced with /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-intro.info
/«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-ints.info.gz:	 67.8% -- replaced with /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-ints.info
/«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-lang.info.gz:	 71.7% -- replaced with /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-lang.info
dh_movefiles	--sourcedir=debian/r-base-core -pr-doc-info
rm -vf	/«PKGBUILDDIR»/debian/r-doc-info/usr/share/info/dir		\
	/«PKGBUILDDIR»/debian/r-doc-info/usr/share/info/dir.old	
removed '/«PKGBUILDDIR»/debian/r-doc-info/usr/share/info/dir'
dh_installdirs -pr-mathlib usr/include usr/lib \
				usr/share/lintian/overrides \
				usr/lib/pkgconfig
dh_movefiles	--sourcedir=debian/r-base-core -pr-mathlib
(cd /«PKGBUILDDIR»/debian/r-mathlib/usr/lib; \
		ls -l ; \
		mv -v  libRmath.so 	     libRmath.so.1.0.0; \
		ln -sv libRmath.so.1.0.0 libRmath.so.1; \
		ln -sv libRmath.so.1  libRmath.so)
total 2516
-rw-rw-r-- 1 root root 1730906 Aug 14 17:59 libRmath.a
-rwxrwxr-x 1 root root  838184 Aug 14 17:59 libRmath.so
drwxr-xr-x 2 root root    4096 Aug 14 18:02 pkgconfig
'libRmath.so' -> 'libRmath.so.1.0.0'
'libRmath.so.1' -> 'libRmath.so.1.0.0'
'libRmath.so' -> 'libRmath.so.1'
install -m 0644 src/include/Rmath.h			\
		/«PKGBUILDDIR»/debian/r-mathlib/usr/include
install -m 0644 debian/Rprofile.site /«PKGBUILDDIR»/debian/r-base-core/etc/R
install -m 0644 debian/Renviron.site /«PKGBUILDDIR»/debian/r-base-core/etc/R
(cd /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/etc; \
	cat /«PKGBUILDDIR»/debian/Renviron-R_LIBS.patch | patch --verbose;	\
	mv Makeconf repositories ldpaths ../../../../etc/R/;	\
	mv Renviron Renviron.ucf;				\
	ln -s  /etc/R/Makeconf	.;				\
	ln -s  /etc/R/Renviron	.;				\
	ln -s  /etc/R/Renviron.site .;				\
	ln -s  /etc/R/Rprofile.site .;				\
	ln -s  /etc/R/ldpaths   .;                              \
	ln -s  /etc/R/repositories .				)
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|--- Renviron.orig	2003-04-04 06:52:22.000000000 -0500
|+++ Renviron	2003-04-04 06:49:05.000000000 -0500
--------------------------
patching file Renviron
Using Plan A...
Hunk #1 succeeded at 43 with fuzz 2 (offset 10 lines).
done
dh_bash-completion	
(cd /«PKGBUILDDIR»/debian/r-base-core/usr/lib/; \
	ln -sv R/lib/libR.so . )
'./libR.so' -> 'R/lib/libR.so'
(cd debian/icon-class-patch && munpack rlogo_icon.png.mpack)
rlogo_icon.png (application/octet-stream)
install -m 0644 debian/icon-class-patch/rlogo_icon.png	\
	debian/r-base-core/usr/share/icons/hicolor/48x48/apps
install -m 0644 debian/icon-class-patch/R.desktop		\
	debian/r-base-core/usr/share/applications
rm debian/icon-class-patch/rlogo_icon.png
touch install-arch-stamp
*** binary-arch ***
dh_testdir -a
dh_testroot -a
dh_installdocs -pr-base-core doc/NEWS.* README \
				debian/README.Atlas \
				debian/README.mathlib
dh_installdocs -pr-mathlib  doc/NEWS.* README \
				debian/README.mathlib
dh_installdocs -pr-base-core-dbg				
dh_installexamples -pr-mathlib	src/nmath/standalone/test.c
dh_installmenu -a
# (cd /«PKGBUILDDIR»/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../../lib/R/doc .)
(cd /«PKGBUILDDIR»/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../R/doc .)
(cd /«PKGBUILDDIR»/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../../lib/R/library .)
install -p -m 0644  debian/r-base-core.lintian \
   /«PKGBUILDDIR»/debian/r-base-core/usr/share/lintian/overrides/r-base-core
install -p -m 0644  debian/r-recommended.lintian \
   /«PKGBUILDDIR»/debian/r-recommended/usr/share/lintian/overrides/r-recommended
install -p -m 0644  debian/r-mathlib.lintian \
   /«PKGBUILDDIR»/debian/r-mathlib/usr/share/lintian/overrides/r-mathlib
dh_installchangelogs -a	-k doc/NEWS 
dh_strip	--sourcedir=/«PKGBUILDDIR»/debian/r-base-core --dbg-package=r-base-core-dbg
dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding
dh_strip debug symbol extraction: all non-arch-all packages for this build platform arm64: r-base-core r-mathlib r-base-core-dbg 
dh_strip debug symbol extraction: not adding gnu debuglinks since --dbg-package is given
dh_strip debug symbol extraction: packages to act on: r-base-core r-mathlib r-base-core-dbg 
dh_strip debug symbol extraction: ignored packages: 
we have -dbg package(s), not installing anything into ddeb
find: `/«PKGBUILDDIR»/debian/r-base-core-dbgsym': No such file or directory
dpkg-gencontrol: warning: -is is deprecated; it is without effect
dpkg-gencontrol: warning: -ip is deprecated; it is without effect
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
/usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol
we have -dbg package(s), not installing anything into ddeb
find: `/«PKGBUILDDIR»/debian/r-mathlib-dbgsym': No such file or directory
dpkg-gencontrol: warning: -is is deprecated; it is without effect
dpkg-gencontrol: warning: -ip is deprecated; it is without effect
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
/usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol
Unknown option: sourcedir
dh_strip 	--sourcedir=/«PKGBUILDDIR»/debian/r-mathlib
dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding
dh_strip debug symbol extraction: all non-arch-all packages for this build platform arm64: r-base-core r-mathlib r-base-core-dbg 
dh_strip debug symbol extraction: packages to act on: r-base-core r-mathlib r-base-core-dbg 
dh_strip debug symbol extraction: ignored packages: 
pkg_create_dbgsym: /«PKGBUILDDIR»/debian/r-base-core-dbgsym already exists, ignoring
pkg_create_dbgsym: /«PKGBUILDDIR»/debian/r-mathlib-dbgsym already exists, ignoring
Unknown option: sourcedir
dh_compress -a
dh_fixperms -a
dh_link -a
dh_makeshlibs -a
dh_installdeb -a
dh_perl -a
dh_shlibdeps -a -l /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/lib
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libtcl8.6.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libtk8.6.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dh_gencontrol -a
dpkg-gencontrol: warning: Depends field of package r-base-core: unknown substitution variable ${perl:Depends}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform arm64: r-base-core r-mathlib r-base-core-dbg 
dh_gencontrol debug symbol wrapper: packages to act on: r-base-core r-mathlib r-base-core-dbg 
dh_gencontrol debug symbol wrapper: ignored packages: 
dh_gencontrol debug symbol wrapper: processing package r-base-core (pkgdir debian/r-base-core, ddeb package dir debian/r-base-core-dbgsym)
dh_gencontrol debug symbol wrapper: building r-base-core-dbgsym_3.2.2-1_arm64.ddeb
dpkg-deb: building package 'r-base-core-dbgsym' in '../r-base-core-dbgsym_3.2.2-1_arm64.ddeb'.
dh_gencontrol debug symbol wrapper: dpkg-distaddfile r-base-core-dbgsym_3.2.2-1_arm64.ddeb gnu-r extra
dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_gencontrol debug symbol wrapper: processing package r-mathlib (pkgdir debian/r-mathlib, ddeb package dir debian/r-mathlib-dbgsym)
dh_gencontrol debug symbol wrapper: building r-mathlib-dbgsym_3.2.2-1_arm64.ddeb
dpkg-deb: building package 'r-mathlib-dbgsym' in '../r-mathlib-dbgsym_3.2.2-1_arm64.ddeb'.
dh_gencontrol debug symbol wrapper: dpkg-distaddfile r-mathlib-dbgsym_3.2.2-1_arm64.ddeb gnu-r extra
dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a
dh_builddeb -a
INFO: pkgstriptranslations version 121
pkgstriptranslations: processing r-base-core (in debian/r-base-core); do_strip: , oemstrip: 
debian/r-base-core/usr/share/applications/R.desktop: does not have gettext domain, not stripping
pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>"
pkgstripfiles: processing control file: debian/r-base-core/DEBIAN/control, package r-base-core, directory debian/r-base-core
.. removing usr/share/doc/r-base-core/changelog.gz
pkgstripfiles: Truncating usr/share/doc/r-base-core/changelog.Debian.gz to topmost ten records
** Processing: ./usr/lib/R/library/graphics/help/figures/pch.png
Warning: Extraneous data found after IEND
700x70 pixels, 4x8 bits/pixel, RGB+alpha
Reducing image to 8 bits/pixel, grayscale
Recoverable errors found in input. Rerun OptiPNG with -fix enabled.
Error: Previous error(s) not fixed

** Status report
1 file(s) have been processed.
1 error(s) have been encountered.
WARNING: optipng failed on ./usr/lib/R/library/graphics/help/figures/pch.png, ignoring
        9287        5520  59% ./usr/lib/R/library/graphics/help/figures/pch.png
        9287        5520  59%
** Processing: ./usr/lib/R/library/graphics/help/figures/oma.png
Warning: Extraneous data found after IEND
540x690 pixels, 8 bits/pixel, grayscale
Reducing image to 2 bits/pixel, 3 colors in palette
Recoverable errors found in input. Rerun OptiPNG with -fix enabled.
Error: Previous error(s) not fixed

** Status report
1 file(s) have been processed.
1 error(s) have been encountered.
WARNING: optipng failed on ./usr/lib/R/library/graphics/help/figures/oma.png, ignoring
        5114        5114 100% ./usr/lib/R/library/graphics/help/figures/oma.png (Unsupported bit depth/color type, 8/0)
        5114        5114 100%
** Processing: ./usr/lib/R/library/graphics/help/figures/mai.png
Warning: Extraneous data found after IEND
600x600 pixels, 8 bits/pixel, grayscale
Reducing image to 2 bits/pixel, 3 colors in palette
Recoverable errors found in input. Rerun OptiPNG with -fix enabled.
Error: Previous error(s) not fixed

** Status report
1 file(s) have been processed.
1 error(s) have been encountered.
WARNING: optipng failed on ./usr/lib/R/library/graphics/help/figures/mai.png, ignoring
        4667        4667 100% ./usr/lib/R/library/graphics/help/figures/mai.png (Unsupported bit depth/color type, 8/0)
        4667        4667 100%
** Processing: ./usr/share/icons/hicolor/48x48/apps/rlogo_icon.png
48x48 pixels, 4x8 bits/pixel, RGB+alpha
Input IDAT size = 4275 bytes
Input file size = 4440 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4111
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 1
  zc = 9  zm = 8  zs = 1  f = 1
  zc = 1  zm = 8  zs = 2  f = 1
  zc = 9  zm = 8  zs = 3  f = 1
  zc = 9  zm = 8  zs = 0  f = 2
  zc = 9  zm = 8  zs = 1  f = 2
  zc = 1  zm = 8  zs = 2  f = 2
  zc = 9  zm = 8  zs = 3  f = 2
  zc = 9  zm = 8  zs = 0  f = 3
  zc = 9  zm = 8  zs = 1  f = 3
  zc = 1  zm = 8  zs = 2  f = 3
  zc = 9  zm = 8  zs = 3  f = 3
  zc = 9  zm = 8  zs = 0  f = 4
  zc = 9  zm = 8  zs = 1  f = 4
  zc = 1  zm = 8  zs = 2  f = 4
  zc = 9  zm = 8  zs = 3  f = 4
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4111

Output IDAT size = 4111 bytes (164 bytes decrease)
Output file size = 4276 bytes (164 bytes = 3.69% decrease)

        4276        4136  96% ./usr/share/icons/hicolor/48x48/apps/rlogo_icon.png
        4276        4136  96%
** Processing: ./usr/share/R/doc/manual/images/fig11.png
288x288 pixels, 8 bits/pixel, 97 colors (94 transparent) in palette
Reducing image to 8 bits/pixel, 96 colors (94 transparent) in palette
Input IDAT size = 3137 bytes
Input file size = 3884 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 2749
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 2710
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 1
  zc = 9  zm = 8  zs = 1  f = 1
  zc = 1  zm = 8  zs = 2  f = 1
  zc = 9  zm = 8  zs = 3  f = 1
  zc = 9  zm = 8  zs = 0  f = 2
  zc = 9  zm = 8  zs = 1  f = 2
  zc = 1  zm = 8  zs = 2  f = 2
  zc = 9  zm = 8  zs = 3  f = 2
  zc = 9  zm = 8  zs = 0  f = 3
  zc = 9  zm = 8  zs = 1  f = 3
  zc = 1  zm = 8  zs = 2  f = 3
  zc = 9  zm = 8  zs = 3  f = 3
  zc = 9  zm = 8  zs = 0  f = 4
  zc = 9  zm = 8  zs = 1  f = 4
  zc = 1  zm = 8  zs = 2  f = 4
  zc = 9  zm = 8  zs = 3  f = 4
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 2710

Output IDAT size = 2710 bytes (427 bytes decrease)
Output file size = 3454 bytes (430 bytes = 11.07% decrease)

        3454        2938  85% ./usr/share/R/doc/manual/images/fig11.png
        3454        2938  85%
** Processing: ./usr/share/R/doc/manual/images/ecdf.png
559x432 pixels, 8 bits/pixel, 130 colors (128 transparent) in palette
Reducing image to 8 bits/pixel, 129 colors (128 transparent) in palette
Input IDAT size = 4690 bytes
Input file size = 5570 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 4046
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 4015
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 1
  zc = 9  zm = 8  zs = 1  f = 1
  zc = 1  zm = 8  zs = 2  f = 1
  zc = 9  zm = 8  zs = 3  f = 1
  zc = 9  zm = 8  zs = 0  f = 2
  zc = 9  zm = 8  zs = 1  f = 2
  zc = 1  zm = 8  zs = 2  f = 2
  zc = 9  zm = 8  zs = 3  f = 2
  zc = 9  zm = 8  zs = 0  f = 3
  zc = 9  zm = 8  zs = 1  f = 3
  zc = 1  zm = 8  zs = 2  f = 3
  zc = 9  zm = 8  zs = 3  f = 3
  zc = 9  zm = 8  zs = 0  f = 4
  zc = 9  zm = 8  zs = 1  f = 4
  zc = 1  zm = 8  zs = 2  f = 4
  zc = 9  zm = 8  zs = 3  f = 4
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 4015

Output IDAT size = 4015 bytes (675 bytes decrease)
Output file size = 4892 bytes (678 bytes = 12.17% decrease)

        4892        4080  83% ./usr/share/R/doc/manual/images/ecdf.png
        4892        4080  83%
** Processing: ./usr/share/R/doc/manual/images/hist.png
559x432 pixels, 8 bits/pixel, 69 colors (67 transparent) in palette
Reducing image to 8 bits/pixel, 68 colors (67 transparent) in palette
Input IDAT size = 8740 bytes
Input file size = 9376 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7856
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 7775
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 1
  zc = 9  zm = 8  zs = 1  f = 1
  zc = 1  zm = 8  zs = 2  f = 1
  zc = 9  zm = 8  zs = 3  f = 1
  zc = 9  zm = 8  zs = 0  f = 2
  zc = 9  zm = 8  zs = 1  f = 2
  zc = 1  zm = 8  zs = 2  f = 2
  zc = 9  zm = 8  zs = 3  f = 2
  zc = 9  zm = 8  zs = 0  f = 3
  zc = 9  zm = 8  zs = 1  f = 3
  zc = 1  zm = 8  zs = 2  f = 3
  zc = 9  zm = 8  zs = 3  f = 3
  zc = 9  zm = 8  zs = 0  f = 4
  zc = 9  zm = 8  zs = 1  f = 4
  zc = 1  zm = 8  zs = 2  f = 4
  zc = 9  zm = 8  zs = 3  f = 4
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 7775

Output IDAT size = 7775 bytes (965 bytes decrease)
Output file size = 8408 bytes (968 bytes = 10.32% decrease)

        8408        6873  81% ./usr/share/R/doc/manual/images/hist.png
        8408        6873  81%
** Processing: ./usr/share/R/doc/manual/images/ice.png
432x432 pixels, 8 bits/pixel, 40 colors (38 transparent) in palette
Reducing image to 8 bits/pixel, 39 colors (38 transparent) in palette
Input IDAT size = 2208 bytes
Input file size = 2728 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 1820
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 1817
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 1
  zc = 9  zm = 8  zs = 1  f = 1
  zc = 1  zm = 8  zs = 2  f = 1
  zc = 9  zm = 8  zs = 3  f = 1
  zc = 9  zm = 8  zs = 0  f = 2
  zc = 9  zm = 8  zs = 1  f = 2
  zc = 1  zm = 8  zs = 2  f = 2
  zc = 9  zm = 8  zs = 3  f = 2
  zc = 9  zm = 8  zs = 0  f = 3
  zc = 9  zm = 8  zs = 1  f = 3
  zc = 1  zm = 8  zs = 2  f = 3
  zc = 9  zm = 8  zs = 3  f = 3
  zc = 9  zm = 8  zs = 0  f = 4
  zc = 9  zm = 8  zs = 1  f = 4
  zc = 1  zm = 8  zs = 2  f = 4
  zc = 9  zm = 8  zs = 3  f = 4
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 1817

Output IDAT size = 1817 bytes (391 bytes decrease)
Output file size = 2334 bytes (394 bytes = 14.44% decrease)

        2334        1783  76% ./usr/share/R/doc/manual/images/ice.png
        2334        1783  76%
** Processing: ./usr/share/R/doc/manual/images/fig12.png
259x331 pixels, 8 bits/pixel, 101 colors (98 transparent) in palette
Reducing image to 8 bits/pixel, 100 colors (98 transparent) in palette
Input IDAT size = 3090 bytes
Input file size = 3853 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 2911
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 2893
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 1
  zc = 9  zm = 8  zs = 1  f = 1
  zc = 1  zm = 8  zs = 2  f = 1
  zc = 9  zm = 8  zs = 3  f = 1
  zc = 9  zm = 8  zs = 0  f = 2
  zc = 9  zm = 8  zs = 1  f = 2
  zc = 1  zm = 8  zs = 2  f = 2
  zc = 9  zm = 8  zs = 3  f = 2
  zc = 9  zm = 8  zs = 0  f = 3
  zc = 9  zm = 8  zs = 1  f = 3
  zc = 1  zm = 8  zs = 2  f = 3
  zc = 9  zm = 8  zs = 3  f = 3
  zc = 9  zm = 8  zs = 0  f = 4
  zc = 9  zm = 8  zs = 1  f = 4
  zc = 1  zm = 8  zs = 2  f = 4
  zc = 9  zm = 8  zs = 3  f = 4
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 2893

Output IDAT size = 2893 bytes (197 bytes decrease)
Output file size = 3653 bytes (200 bytes = 5.19% decrease)

        3653        3021  82% ./usr/share/R/doc/manual/images/fig12.png
        3653        3021  82%
** Processing: ./usr/share/R/doc/manual/images/QQ.png
432x432 pixels, 8 bits/pixel, 136 colors (134 transparent) in palette
Reducing image to 8 bits/pixel, 135 colors (134 transparent) in palette
Input IDAT size = 6281 bytes
Input file size = 7185 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5583
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 5523
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 1
  zc = 9  zm = 8  zs = 1  f = 1
  zc = 1  zm = 8  zs = 2  f = 1
  zc = 9  zm = 8  zs = 3  f = 1
  zc = 9  zm = 8  zs = 0  f = 2
  zc = 9  zm = 8  zs = 1  f = 2
  zc = 1  zm = 8  zs = 2  f = 2
  zc = 9  zm = 8  zs = 3  f = 2
  zc = 9  zm = 8  zs = 0  f = 3
  zc = 9  zm = 8  zs = 1  f = 3
  zc = 1  zm = 8  zs = 2  f = 3
  zc = 9  zm = 8  zs = 3  f = 3
  zc = 9  zm = 8  zs = 0  f = 4
  zc = 9  zm = 8  zs = 1  f = 4
  zc = 1  zm = 8  zs = 2  f = 4
  zc = 9  zm = 8  zs = 3  f = 4
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 5523

Output IDAT size = 5523 bytes (758 bytes decrease)
Output file size = 6424 bytes (761 bytes = 10.59% decrease)

        6424        5607  87% ./usr/share/R/doc/manual/images/QQ.png
        6424        5607  87%
pkgstripfiles: PNG optimization for package r-base-core took 28 s
dpkg-deb: building package 'r-base-core' in '../r-base-core_3.2.2-1_arm64.deb'.
INFO: pkgstriptranslations version 121
pkgstriptranslations: processing r-mathlib (in debian/r-mathlib); do_strip: , oemstrip: 
pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>"
pkgstripfiles: processing control file: debian/r-mathlib/DEBIAN/control, package r-mathlib, directory debian/r-mathlib
.. removing usr/share/doc/r-mathlib/changelog.gz
pkgstripfiles: Truncating usr/share/doc/r-mathlib/changelog.Debian.gz to topmost ten records
pkgstripfiles: PNG optimization for package r-mathlib took 0 s
dpkg-deb: building package 'r-mathlib' in '../r-mathlib_3.2.2-1_arm64.deb'.
INFO: pkgstriptranslations version 121
pkgstriptranslations: processing r-base-core-dbg (in debian/r-base-core-dbg); do_strip: , oemstrip: 
pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>"
pkgstripfiles: processing control file: debian/r-base-core-dbg/DEBIAN/control, package r-base-core-dbg, directory debian/r-base-core-dbg
.. removing usr/share/doc/r-base-core-dbg/changelog.gz
Searching for duplicated docs in dependency r-base-core...
  symlinking changelog.Debian.gz in r-base-core-dbg to file in r-base-core
pkgstripfiles: PNG optimization for package r-base-core-dbg took 0 s
dpkg-deb: building package 'r-base-core-dbg' in '../r-base-core-dbg_3.2.2-1_arm64.deb'.
 dpkg-genchanges -B -mLaunchpad Build Daemon <buildd@auburn.buildd> >../r-base_3.2.2-1_arm64.changes
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build r-base-3.2.2
dpkg-buildpackage: binary-only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20150814-1404

Finished
────────

I: Built successfully

┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build Chroot                                                            │
└──────────────────────────────────────────────────────────────────────────────┘


┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘


r-base_3.2.2-1_arm64.changes:
─────────────────────────────

Format: 1.8
Date: Fri, 14 Aug 2015 05:12:26 -0500
Source: r-base
Binary: r-base r-base-core r-base-dev r-mathlib r-base-html r-doc-pdf r-doc-html r-doc-info r-recommended r-base-core-dbg
Architecture: arm64
Version: 3.2.2-1
Distribution: wily-proposed
Urgency: low
Maintainer: Launchpad Build Daemon <buildd@auburn.buildd>
Changed-By: Dirk Eddelbuettel <edd@debian.org>
Description:
 r-base     - GNU R statistical computation and graphics system
 r-base-core - GNU R core of statistical computation and graphics system
 r-base-core-dbg - GNU R debug symbols for statistical comp. language and environmen
 r-base-dev - GNU R installation of auxiliary GNU R packages
 r-base-html - GNU R html docs for statistical computing system functions
 r-doc-html - GNU R html manuals for statistical computing system
 r-doc-info - GNU R info manuals statistical computing system
 r-doc-pdf  - GNU R pdf manuals for statistical computing system
 r-mathlib  - GNU R standalone mathematics library
 r-recommended - GNU R collection of recommended packages [metapackage]
Changes:
 r-base (3.2.2-1) unstable; urgency=low
 .
   * New upstream version released this morning
 .
   * debian/updated_x11_logo.patch: Applied to refresh bitmap'ed logo; now
     using second patch with reduced memory footprint and resolution
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 2e964fc352266a5c06059400ce334c31f177e625 1472 r-mathlib-dbgsym_3.2.2-1_arm64.ddeb
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Files:
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 dc7f83440b39c49d4329cec90ad55963 1504 gnu-r extra r-base-core-dbgsym_3.2.2-1_arm64.ddeb
 d80417bc6d1720df96643eeb470deff7 20069418 gnu-r optional r-base-core_3.2.2-1_arm64.deb
 ffb1af6996d396e1c918d4721a80683f 1472 gnu-r extra r-mathlib-dbgsym_3.2.2-1_arm64.ddeb
 95cfa14c9d6eb7e2b85f74026f9ea961 1261864 gnu-r optional r-mathlib_3.2.2-1_arm64.deb

┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents                                                             │
└──────────────────────────────────────────────────────────────────────────────┘


r-base-core-dbg_3.2.2-1_arm64.deb
─────────────────────────────────

 new debian package, version 2.0.
 size 2999582 bytes: control archive=1830 bytes.
    1844 bytes,    39 lines      control              
    1700 bytes,    21 lines      md5sums              
 Package: r-base-core-dbg
 Source: r-base
 Version: 3.2.2-1
 Architecture: arm64
 Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
 Original-Maintainer: Dirk Eddelbuettel <edd@debian.org>
 Installed-Size: 13700
 Depends: r-base-core (= 3.2.2-1), r-base-dev (= 3.2.2-1)
 Section: debug
 Priority: extra
 Homepage: http://www.r-project.org/
 Description: GNU R debug symbols for statistical comp. language and environment
  R is a system for statistical computation and graphics.  It consists
  of a language plus a run-time environment with graphics, a debugger,
  access to certain system functions, and the ability to run programs
  stored in script files.
  .
  The design of R has been heavily influenced by two existing languages:
  Becker, Chambers & Wilks' S and Sussman's Scheme.  Whereas the
  resulting language is very similar in appearance to S, the underlying
  implementation and semantics are derived from Scheme.
  .
  The core of R is an interpreted computer language which allows
  branching and looping as well as modular programming using functions.
  Most of the user-visible functions in R are written in R.  It is
  possible for the user to interface to procedures written in the
  C, C++, or FORTRAN languages for efficiency, and many of R's core
  functions do so.  The R distribution contains functionality for a
  large number of statistical procedures and underlying applied math
  computations.  There is also a large set of functions which provide
  a flexible graphical environment for creating various kinds of data
  presentations.
  .
  Additionally, several thousand extension "packages" are available from
  CRAN, the Comprehensive R Archive Network, many also as Debian packages,
  named 'r-cran-<name>'.
  .
  This package contains debugging symbol tables for the binaries and dynamic
  libraries in the r-base-core package.

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drwxr-xr-x root/root         0 2015-08-14 14:02 ./usr/share/
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lrwxrwxrwx root/root         0 2015-08-14 14:02 ./usr/share/doc/r-base-core-dbg/NEWS.gz -> changelog.gz
lrwxrwxrwx root/root         0 2015-08-14 14:04 ./usr/share/doc/r-base-core-dbg/changelog.Debian.gz -> ../r-base-core/changelog.Debian.gz
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r-base-core_3.2.2-1_arm64.deb
─────────────────────────────

 new debian package, version 2.0.
 size 20069418 bytes: control archive=26841 bytes.
     118 bytes,     6 lines      conffiles            
    2756 bytes,    45 lines      control              
   69409 bytes,   878 lines      md5sums              
    2396 bytes,    70 lines   *  postinst             #!/bin/sh
     160 bytes,     5 lines   *  postrm               #!/bin/sh
     667 bytes,    34 lines   *  preinst              #!/bin/sh
     689 bytes,    26 lines   *  prerm                #!/bin/sh
      30 bytes,     1 lines      shlibs               
 Package: r-base-core
 Source: r-base
 Version: 3.2.2-1
 Architecture: arm64
 Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
 Original-Maintainer: Dirk Eddelbuettel <edd@debian.org>
 Installed-Size: 32397
 Depends: zip, unzip, libpaper-utils, xdg-utils, libblas3 | libblas.so.3, libbz2-1.0, libc6 (>= 2.17), libcairo2 (>= 1.6.0), libcurl3 (>= 7.28.0), libglib2.0-0 (>= 2.12.0), libgomp1 (>= 4.9), libjpeg8 (>= 8c), liblapack3 | liblapack.so.3, liblzma5 (>= 5.1.1alpha+20120614), libpango-1.0-0 (>= 1.14.0), libpangocairo-1.0-0 (>= 1.14.0), libpcre3, libpng12-0 (>= 1.2.13-4), libreadline6 (>= 6.0), libtcl8.6 (>= 8.6.0), libtiff5 (>= 4.0.3), libtk8.6 (>= 8.6.0), libx11-6, libxt6, zlib1g (>= 1:1.1.4), ucf (>= 3.0), ca-certificates
 Recommends: r-recommended, r-base-dev, r-doc-html
 Suggests: ess, r-doc-info | r-doc-pdf, r-mathlib, r-base-html
 Conflicts: r-base-latex, r-cran-rcompgen, r-gnome
 Replaces: r-base (<= 1.4.1-1), r-base-latex (<= 2.9.2-4), r-cran-rcompgen (<= 0.1-17-1), r-gnome (<= 2.3.1), r-recommended (<< 1.9.0)
 Provides: r-api-3, r-base-latex, r-cran-rcompgen, r-gnome
 Section: gnu-r
 Priority: optional
 Homepage: http://www.r-project.org/
 Description: GNU R core of statistical computation and graphics system
  R is a system for statistical computation and graphics.  It consists
  of a language plus a run-time environment with graphics, a debugger,
  access to certain system functions, and the ability to run programs
  stored in script files.
  .
  The design of R has been heavily influenced by two existing languages:
  Becker, Chambers & Wilks' S and Sussman's Scheme.  Whereas the
  resulting language is very similar in appearance to S, the underlying
  implementation and semantics are derived from Scheme.
  .
  The core of R is an interpreted computer language which allows
  branching and looping as well as modular programming using functions.
  Most of the user-visible functions in R are written in R.  It is
  possible for the user to interface to procedures written in the
  C, C++, or FORTRAN languages for efficiency, and many of R's core
  functions do so.  The R distribution contains functionality for a
  large number of statistical procedures and underlying applied math
  computations.  There is also a large set of functions which provide
  a flexible graphical environment for creating various kinds of data
  presentations.
  .
  Additionally, several thousand extension "packages" are available
  from CRAN, the Comprehensive R Archive Network, many also as Debian
  packages, named 'r-cran-<name>'.
  .
  This package provides the core GNU R system from which only the optional
  documentation packages r-base-html, r-doc-html, r-doc-pdf and r-doc-info
  have been split off to somewhat reduce the size of this package.

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-rw-r--r-- root/root    108753 2014-03-12 19:03 ./usr/share/doc/r-base-core/NEWS.1.gz
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-rw-r--r-- root/root    366046 2015-08-14 13:54 ./usr/share/doc/r-base-core/NEWS.pdf.gz
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-rw-r--r-- root/root      3026 2015-08-14 13:43 ./usr/share/doc/r-base-core/README.mathlib
-rw-r--r-- root/root       939 2015-08-14 14:03 ./usr/share/doc/r-base-core/changelog.Debian.gz
-rw-r--r-- root/root     20761 2015-08-14 13:43 ./usr/share/doc/r-base-core/copyright
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r-mathlib_3.2.2-1_arm64.deb
───────────────────────────

 new debian package, version 2.0.
 size 1261864 bytes: control archive=1916 bytes.
    1839 bytes,    40 lines      control              
    1148 bytes,    17 lines      md5sums              
     135 bytes,     7 lines   *  postinst             #!/bin/sh
     132 bytes,     7 lines   *  postrm               #!/bin/sh
      30 bytes,     1 lines      shlibs               
 Package: r-mathlib
 Source: r-base
 Version: 3.2.2-1
 Architecture: arm64
 Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
 Original-Maintainer: Dirk Eddelbuettel <edd@debian.org>
 Installed-Size: 1779
 Depends: libc6 (>= 2.17)
 Recommends: r-base-core (= 3.2.2-1), r-base-dev (= 3.2.2-1)
 Section: gnu-r
 Priority: optional
 Homepage: http://www.r-project.org/
 Description: GNU R standalone mathematics library
  R is a system for statistical computation and graphics.  It consists
  of a language plus a run-time environment with graphics, a debugger,
  access to certain system functions, and the ability to run programs
  stored in script files.
  .
  The design of R has been heavily influenced by two existing languages:
  Becker, Chambers & Wilks' S and Sussman's Scheme.  Whereas the
  resulting language is very similar in appearance to S, the underlying
  implementation and semantics are derived from Scheme.
  .
  The core of R is an interpreted computer language which allows
  branching and looping as well as modular programming using functions.
  Most of the user-visible functions in R are written in R.  It is
  possible for the user to interface to procedures written in the
  C, C++, or FORTRAN languages for efficiency, and many of R's core
  functions do so.  The R distribution contains functionality for a
  large number of statistical procedures and underlying applied math
  computations.  There is also a large set of functions which provide
  a flexible graphical environment for creating various kinds of data
  presentations.
  .
  Additionally, several thousand extension "packages" are available from
  CRAN, the Comprehensive R Archive Network, many also as Debian packages,
  named 'r-cran-<name>'.
  .
  This package provides the libRmath shared and static libraries which can
  be called from standalone C or C++ code.

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drwxr-xr-x root/root         0 2015-08-14 14:02 ./usr/include/
-rw-r--r-- root/root     17619 2015-08-14 14:02 ./usr/include/Rmath.h
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-rw-r--r-- root/root    153728 2015-08-14 14:02 ./usr/lib/libRmath.so.1.0.0
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-rw-r--r-- root/root       173 2015-08-14 13:59 ./usr/lib/pkgconfig/libRmath.pc
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drwxr-xr-x root/root         0 2015-08-14 14:02 ./usr/share/doc/
drwxr-xr-x root/root         0 2015-08-14 14:03 ./usr/share/doc/r-mathlib/
-rw-r--r-- root/root     35933 2014-03-12 19:03 ./usr/share/doc/r-mathlib/NEWS.0.gz
-rw-r--r-- root/root    108753 2014-03-12 19:03 ./usr/share/doc/r-mathlib/NEWS.1.gz
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-rw-r--r-- root/root    229656 2014-03-12 19:03 ./usr/share/doc/r-mathlib/NEWS.2.gz
-rw-r--r-- root/root     59391 2015-08-12 18:15 ./usr/share/doc/r-mathlib/NEWS.Rd.gz
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-rw-r--r-- root/root    366046 2015-08-14 13:54 ./usr/share/doc/r-mathlib/NEWS.pdf.gz
-rw-r--r-- root/root    247782 2015-08-14 13:54 ./usr/share/doc/r-mathlib/NEWS.rds.gz
-rw-r--r-- root/root      2107 2014-07-07 18:15 ./usr/share/doc/r-mathlib/README.gz
-rw-r--r-- root/root      3026 2015-08-14 13:43 ./usr/share/doc/r-mathlib/README.mathlib
-rw-r--r-- root/root       942 2015-08-14 14:03 ./usr/share/doc/r-mathlib/changelog.Debian.gz
-rw-r--r-- root/root     20761 2015-08-14 13:43 ./usr/share/doc/r-mathlib/copyright
drwxr-xr-x root/root         0 2015-08-14 14:02 ./usr/share/doc/r-mathlib/examples/
-rw-r--r-- root/root      1370 2012-04-15 18:05 ./usr/share/doc/r-mathlib/examples/test.c
drwxr-xr-x root/root         0 2015-08-14 13:59 ./usr/share/lintian/
drwxr-xr-x root/root         0 2015-08-14 14:02 ./usr/share/lintian/overrides/
-rw-r--r-- root/root       231 2015-08-14 13:43 ./usr/share/lintian/overrides/r-mathlib


┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build                                                                   │
└──────────────────────────────────────────────────────────────────────────────┘


┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘

Not removing build depends: as requested
Keeping session: 

┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘

Build Architecture: arm64
Build-Space: 331044
Build-Time: 1246
Distribution: wily-proposed
Host Architecture: arm64
Install-Time: 683
Job: r-base_3.2.2-1.dsc
Machine Architecture: arm64
Package: r-base
Package-Time: 1933
Source-Version: 3.2.2-1
Space: 331044
Status: successful
Version: 3.2.2-1
────────────────────────────────────────────────────────────────────────────────
Finished at 20150814-1404
Build needed 00:32:13, 331044k disc space
RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-7800431']
Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-7800431/chroot-autobuild...
RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-7800431']
Unmounting chroot for build PACKAGEBUILD-7800431...
RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-7800431']
Removing build PACKAGEBUILD-7800431