RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep']
Forking launchpad-buildd slave process...
Kernel version: Linux lgw01-42 3.19.0-43-generic #49~14.04.1-Ubuntu SMP Thu Dec 31 15:44:49 UTC 2015 x86_64
Buildd toolchain package versions: launchpad-buildd_135 python-lpbuildd_135 sbuild_0.65.2-1ubuntu2~ubuntu14.04.1~ppa6 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.04.1 bzr_2.6.0+bzr6593-1ubuntu1.1 dpkg-dev_1.17.5ubuntu5.5 python-debian_0.1.27ubuntu1~ubuntu14.04.1~ppa1.
Syncing the system clock with the buildd NTP service...
11 Jan 12:40:48 ntpdate[1651]: adjust time server 10.211.37.1 offset 0.119574 sec
RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-8831329', '/home/buildd/filecache-default/9ecf9f6874f6384eb09ac1764090b184b3b8f2b8']
Unpacking chroot for build PACKAGEBUILD-8831329
RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-8831329']
Mounting chroot for build PACKAGEBUILD-8831329
RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-8831329', 'deb http://ftpmaster.internal/ubuntu xenial main universe', 'deb http://ftpmaster.internal/ubuntu xenial-security main universe', 'deb http://ftpmaster.internal/ubuntu xenial-updates main universe', 'deb http://ftpmaster.internal/ubuntu xenial-proposed main universe']
Overriding sources.list in build-PACKAGEBUILD-8831329
RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-8831329', 'i386']
Updating debian chroot for build PACKAGEBUILD-8831329
Get:1 http://ftpmaster.internal xenial InRelease [227 kB]
Get:2 http://ftpmaster.internal xenial-security InRelease [73.5 kB]
Get:3 http://ftpmaster.internal xenial-updates InRelease [73.5 kB]
Get:4 http://ftpmaster.internal xenial-proposed InRelease [227 kB]
Get:5 http://ftpmaster.internal xenial/main i386 Packages [1471 kB]
Get:6 http://ftpmaster.internal xenial/universe i386 Packages [7156 kB]
Get:7 http://ftpmaster.internal xenial/main Translation-en [850 kB]
Get:8 http://ftpmaster.internal xenial/universe Translation-en [4790 kB]
Get:9 http://ftpmaster.internal xenial-security/main i386 Packages [28 B]
Get:10 http://ftpmaster.internal xenial-security/universe i386 Packages [28 B]
Get:11 http://ftpmaster.internal xenial-security/main Translation-en [28 B]
Get:12 http://ftpmaster.internal xenial-security/universe Translation-en [28 B]
Get:13 http://ftpmaster.internal xenial-updates/main i386 Packages [28 B]
Get:14 http://ftpmaster.internal xenial-updates/universe i386 Packages [28 B]
Get:15 http://ftpmaster.internal xenial-updates/main Translation-en [28 B]
Get:16 http://ftpmaster.internal xenial-updates/universe Translation-en [28 B]
Get:17 http://ftpmaster.internal xenial-proposed/main i386 Packages [46.0 kB]
Get:18 http://ftpmaster.internal xenial-proposed/universe i386 Packages [225 kB]
Get:19 http://ftpmaster.internal xenial-proposed/main Translation-en [24.3 kB]
Get:20 http://ftpmaster.internal xenial-proposed/universe Translation-en [128 kB]
Fetched 15.3 MB in 9s (1539 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  libapt-pkg4.16 libisl13 libprocps3 udev
Use 'apt-get autoremove' to remove them.
The following packages will be REMOVED:
  perl-modules*
The following NEW packages will be installed:
  libapt-pkg5.0 libisl15 libperl5.22 libprocps4 perl-modules-5.22
The following packages will be upgraded:
  advancecomp apt apt-transport-https base-files base-passwd binutils bsdutils
  cpp cpp-5 debconf diffutils dmsetup dpkg dpkg-dev e2fslibs e2fsprogs
  findutils g++ g++-5 gcc gcc-5 gcc-5-base gnupg gpgv grep hostname init
  initscripts libapparmor1 libasan2 libatomic1 libaudit-common libaudit1
  libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap2 libcap2-bin libcc1-0
  libcilkrts5 libcomerr2 libcurl3-gnutls libdbus-1-3 libdebconfclient0
  libdevmapper1.02.1 libdpkg-perl libfdisk1 libffi6 libgcc-5-dev libgcc1
  libgcrypt20 libgmp10 libgnutls-deb0-28 libgomp1 libgpg-error0
  libgssapi-krb5-2 libidn11 libitm1 libk5crypto3 libkeyutils1 libkrb5-3
  libkrb5support0 libldap-2.4-2 libmount1 libmpfr4 libmpx0 libncurses5
  libncursesw5 libnih-dbus1 libnih1 libp11-kit0 libpng12-0 libquadmath0
  libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1
  libsmartcols1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-5-dev libstdc++6
  libsystemd0 libtasn1-6 libtinfo5 libubsan0 libudev1 libusb-0.1-4 libuuid1
  linux-libc-dev lsb-base mount multiarch-support ncurses-base ncurses-bin
  openssl perl perl-base pkg-create-dbgsym pkgbinarymangler procps systemd
  systemd-sysv sysv-rc sysvinit-utils tar udev util-linux
112 upgraded, 5 newly installed, 1 to remove and 0 not upgraded.
Need to get 131 MB of archives.
After this operation, 283 MB of additional disk space will be used.
Get:1 http://ftpmaster.internal/ubuntu/ xenial/main base-files i386 9.4ubuntu3 [62.0 kB]
Get:2 http://ftpmaster.internal/ubuntu/ xenial/main bsdutils i386 1:2.27.1-1ubuntu3 [53.7 kB]
Get:3 http://ftpmaster.internal/ubuntu/ xenial/main diffutils i386 1:3.3-3 [158 kB]
Get:4 http://ftpmaster.internal/ubuntu/ xenial/main dpkg i386 1.18.3ubuntu1 [2109 kB]
Get:5 http://ftpmaster.internal/ubuntu/ xenial/main libc6-dev i386 2.21-0ubuntu5 [1608 kB]
Get:6 http://ftpmaster.internal/ubuntu/ xenial/main libc-dev-bin i386 2.21-0ubuntu5 [66.5 kB]
Get:7 http://ftpmaster.internal/ubuntu/ xenial/main linux-libc-dev i386 4.3.0-5.16 [819 kB]
Get:8 http://ftpmaster.internal/ubuntu/ xenial/main libcap2 i386 1:2.24-12 [13.2 kB]
Get:9 http://ftpmaster.internal/ubuntu/ xenial/main libc-bin i386 2.21-0ubuntu5 [1126 kB]
Get:10 http://ftpmaster.internal/ubuntu/ xenial/main libgomp1 i386 5.3.1-5ubuntu2 [58.7 kB]
Get:11 http://ftpmaster.internal/ubuntu/ xenial/main libitm1 i386 5.3.1-5ubuntu2 [30.7 kB]
Get:12 http://ftpmaster.internal/ubuntu/ xenial/main libatomic1 i386 5.3.1-5ubuntu2 [9694 B]
Get:13 http://ftpmaster.internal/ubuntu/ xenial/main libasan2 i386 5.3.1-5ubuntu2 [272 kB]
Get:14 http://ftpmaster.internal/ubuntu/ xenial/main gcc-5-base i386 5.3.1-5ubuntu2 [16.5 kB]
Get:15 http://ftpmaster.internal/ubuntu/ xenial/main libgcc1 i386 1:5.3.1-5ubuntu2 [46.4 kB]
Get:16 http://ftpmaster.internal/ubuntu/ xenial/main libubsan0 i386 5.3.1-5ubuntu2 [111 kB]
Get:17 http://ftpmaster.internal/ubuntu/ xenial/main libcilkrts5 i386 5.3.1-5ubuntu2 [44.8 kB]
Get:18 http://ftpmaster.internal/ubuntu/ xenial/main libmpx0 i386 5.3.1-5ubuntu2 [11.1 kB]
Get:19 http://ftpmaster.internal/ubuntu/ xenial/main libquadmath0 i386 5.3.1-5ubuntu2 [203 kB]
Get:20 http://ftpmaster.internal/ubuntu/ xenial/main libisl15 i386 0.15-3 [588 kB]
Get:21 http://ftpmaster.internal/ubuntu/ xenial/main cpp-5 i386 5.3.1-5ubuntu2 [28.3 MB]
Get:22 http://ftpmaster.internal/ubuntu/ xenial/main libcc1-0 i386 5.3.1-5ubuntu2 [39.3 kB]
Get:23 http://ftpmaster.internal/ubuntu/ xenial/main binutils i386 2.25.90.20160101-1ubuntu2 [2484 kB]
Get:24 http://ftpmaster.internal/ubuntu/ xenial/main g++-5 i386 5.3.1-5ubuntu2 [30.4 MB]
Get:25 http://ftpmaster.internal/ubuntu/ xenial/main gcc-5 i386 5.3.1-5ubuntu2 [28.5 MB]
Get:26 http://ftpmaster.internal/ubuntu/ xenial/main libgcc-5-dev i386 5.3.1-5ubuntu2 [2243 kB]
Get:27 http://ftpmaster.internal/ubuntu/ xenial/main libstdc++-5-dev i386 5.3.1-5ubuntu2 [1458 kB]
Get:28 http://ftpmaster.internal/ubuntu/ xenial/main libstdc++6 i386 5.3.1-5ubuntu2 [418 kB]
Get:29 http://ftpmaster.internal/ubuntu/ xenial/main libgmp10 i386 2:6.1.0+dfsg-2 [246 kB]
Get:30 http://ftpmaster.internal/ubuntu/ xenial/main libmpfr4 i386 3.1.3-2 [193 kB]
Get:31 http://ftpmaster.internal/ubuntu/ xenial/main libc6 i386 2.21-0ubuntu5 [4087 kB]
Get:32 http://ftpmaster.internal/ubuntu/ xenial/main e2fslibs i386 1.42.13-1ubuntu1 [208 kB]
Get:33 http://ftpmaster.internal/ubuntu/ xenial/main e2fsprogs i386 1.42.13-1ubuntu1 [793 kB]
Get:34 http://ftpmaster.internal/ubuntu/ xenial/main findutils i386 4.4.2-10 [253 kB]
Get:35 http://ftpmaster.internal/ubuntu/ xenial-proposed/main grep i386 2.22-1 [154 kB]
Get:36 http://ftpmaster.internal/ubuntu/ xenial/main hostname i386 3.16ubuntu2 [11.8 kB]
Get:37 http://ftpmaster.internal/ubuntu/ xenial/main init i386 1.24ubuntu2 [3966 B]
Get:38 http://ftpmaster.internal/ubuntu/ xenial/main libsmartcols1 i386 2.27.1-1ubuntu3 [67.8 kB]
Get:39 http://ftpmaster.internal/ubuntu/ xenial/main libuuid1 i386 2.27.1-1ubuntu3 [15.9 kB]
Get:40 http://ftpmaster.internal/ubuntu/ xenial/main libblkid1 i386 2.27.1-1ubuntu3 [120 kB]
Get:41 http://ftpmaster.internal/ubuntu/ xenial/main libfdisk1 i386 2.27.1-1ubuntu3 [154 kB]
Get:42 http://ftpmaster.internal/ubuntu/ xenial/main debconf all 1.5.58ubuntu1 [136 kB]
Get:43 http://ftpmaster.internal/ubuntu/ xenial/main sysvinit-utils i386 2.88dsf-59.2ubuntu3 [26.1 kB]
Get:44 http://ftpmaster.internal/ubuntu/ xenial/main sysv-rc all 2.88dsf-59.2ubuntu3 [36.1 kB]
Get:45 http://ftpmaster.internal/ubuntu/ xenial/main initscripts i386 2.88dsf-59.2ubuntu3 [24.8 kB]
Get:46 http://ftpmaster.internal/ubuntu/ xenial/main util-linux i386 2.27.1-1ubuntu3 [873 kB]
Get:47 http://ftpmaster.internal/ubuntu/ xenial/main libudev1 i386 228-3ubuntu1 [59.9 kB]
Get:48 http://ftpmaster.internal/ubuntu/ xenial/main udev i386 228-3ubuntu1 [981 kB]
Get:49 http://ftpmaster.internal/ubuntu/ xenial/main libsystemd0 i386 228-3ubuntu1 [219 kB]
Get:50 http://ftpmaster.internal/ubuntu/ xenial/main systemd i386 228-3ubuntu1 [3515 kB]
Get:51 http://ftpmaster.internal/ubuntu/ xenial/main libselinux1 i386 2.4-3 [61.0 kB]
Get:52 http://ftpmaster.internal/ubuntu/ xenial/main libtinfo5 i386 6.0+20151024-2ubuntu1 [77.6 kB]
Get:53 http://ftpmaster.internal/ubuntu/ xenial/main libncurses5 i386 6.0+20151024-2ubuntu1 [101 kB]
Get:54 http://ftpmaster.internal/ubuntu/ xenial/main libncursesw5 i386 6.0+20151024-2ubuntu1 [126 kB]
Get:55 http://ftpmaster.internal/ubuntu/ xenial/main libprocps4 i386 2:3.3.10-4ubuntu1 [33.7 kB]
Get:56 http://ftpmaster.internal/ubuntu/ xenial/main procps i386 2:3.3.10-4ubuntu1 [221 kB]
Get:57 http://ftpmaster.internal/ubuntu/ xenial/main libapparmor1 i386 2.10-0ubuntu10 [30.0 kB]
Get:58 http://ftpmaster.internal/ubuntu/ xenial/main libaudit-common all 1:2.4.4-4ubuntu1 [3892 B]
Get:59 http://ftpmaster.internal/ubuntu/ xenial/main libaudit1 i386 1:2.4.4-4ubuntu1 [37.4 kB]
Get:60 http://ftpmaster.internal/ubuntu/ xenial/main libmount1 i386 2.27.1-1ubuntu3 [125 kB]
Get:61 http://ftpmaster.internal/ubuntu/ xenial/main libseccomp2 i386 2.2.3-2ubuntu3 [33.1 kB]
Get:62 http://ftpmaster.internal/ubuntu/ xenial/main libcap2-bin i386 1:2.24-12 [20.5 kB]
Get:63 http://ftpmaster.internal/ubuntu/ xenial-proposed/main lsb-base all 9.20160110 [13.5 kB]
Get:64 http://ftpmaster.internal/ubuntu/ xenial/main mount i386 2.27.1-1ubuntu3 [126 kB]
Get:65 http://ftpmaster.internal/ubuntu/ xenial/main ncurses-bin i386 6.0+20151024-2ubuntu1 [138 kB]
Get:66 http://ftpmaster.internal/ubuntu/ xenial/main perl-modules-5.22 all 5.22.1-3 [2648 kB]
Get:67 http://ftpmaster.internal/ubuntu/ xenial/main libperl5.22 i386 5.22.1-3 [2976 kB]
Get:68 http://ftpmaster.internal/ubuntu/ xenial/main perl i386 5.22.1-3 [237 kB]
Get:69 http://ftpmaster.internal/ubuntu/ xenial/main perl-base i386 5.22.1-3 [1367 kB]
Get:70 http://ftpmaster.internal/ubuntu/ xenial/main tar i386 1.28-2.1 [220 kB]
Get:71 http://ftpmaster.internal/ubuntu/ xenial/main libapt-pkg5.0 i386 1.1.10 [718 kB]
Get:72 http://ftpmaster.internal/ubuntu/ xenial/main apt i386 1.1.10 [981 kB]
Get:73 http://ftpmaster.internal/ubuntu/ xenial/main gpgv i386 1.4.19-6ubuntu1 [172 kB]
Get:74 http://ftpmaster.internal/ubuntu/ xenial/main libusb-0.1-4 i386 2:0.1.12-28 [17.6 kB]
Get:75 http://ftpmaster.internal/ubuntu/ xenial/main gnupg i386 1.4.19-6ubuntu1 [647 kB]
Get:76 http://ftpmaster.internal/ubuntu/ xenial/main libdebconfclient0 i386 0.198ubuntu1 [6444 B]
Get:77 http://ftpmaster.internal/ubuntu/ xenial/main base-passwd i386 3.5.39 [52.5 kB]
Get:78 http://ftpmaster.internal/ubuntu/ xenial/main ncurses-base all 6.0+20151024-2ubuntu1 [17.1 kB]
Get:79 http://ftpmaster.internal/ubuntu/ xenial/main systemd-sysv i386 228-3ubuntu1 [15.4 kB]
Get:80 http://ftpmaster.internal/ubuntu/ xenial/main libdbus-1-3 i386 1.10.6-1ubuntu1 [173 kB]
Get:81 http://ftpmaster.internal/ubuntu/ xenial/main libnih-dbus1 i386 1.0.3-4.3ubuntu1 [15.1 kB]
Get:82 http://ftpmaster.internal/ubuntu/ xenial/main libnih1 i386 1.0.3-4.3ubuntu1 [51.8 kB]
Get:83 http://ftpmaster.internal/ubuntu/ xenial/main libffi6 i386 3.2.1-4 [17.0 kB]
Get:84 http://ftpmaster.internal/ubuntu/ xenial/main libp11-kit0 i386 0.23.2-3 [109 kB]
Get:85 http://ftpmaster.internal/ubuntu/ xenial/main libtasn1-6 i386 4.7-3 [45.0 kB]
Get:86 http://ftpmaster.internal/ubuntu/ xenial/main libgnutls-deb0-28 i386 3.3.18-1ubuntu1 [540 kB]
Get:87 http://ftpmaster.internal/ubuntu/ xenial/main libldap-2.4-2 i386 2.4.41+dfsg-1ubuntu3 [172 kB]
Get:88 http://ftpmaster.internal/ubuntu/ xenial/main libcomerr2 i386 1.42.13-1ubuntu1 [65.9 kB]
Get:89 http://ftpmaster.internal/ubuntu/ xenial/main libdevmapper1.02.1 i386 2:1.02.110-1ubuntu2 [151 kB]
Get:90 http://ftpmaster.internal/ubuntu/ xenial/main libgpg-error0 i386 1.21-1 [37.3 kB]
Get:91 http://ftpmaster.internal/ubuntu/ xenial/main libgcrypt20 i386 1.6.4-4 [320 kB]
Get:92 http://ftpmaster.internal/ubuntu/ xenial/main libsepol1 i386 2.4-2 [204 kB]
Get:93 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libsemanage-common all 2.4-3 [6744 B]
Get:94 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libsemanage1 i386 2.4-3 [86.8 kB]
Get:95 http://ftpmaster.internal/ubuntu/ xenial/main libss2 i386 1.42.13-1ubuntu1 [70.6 kB]
Get:96 http://ftpmaster.internal/ubuntu/ xenial/main multiarch-support i386 2.21-0ubuntu5 [7182 B]
Get:97 http://ftpmaster.internal/ubuntu/ xenial/main libpng12-0 i386 1.2.54-1ubuntu1 [122 kB]
Get:98 http://ftpmaster.internal/ubuntu/ xenial/main libsqlite3-0 i386 3.10.0-1 [420 kB]
Get:99 http://ftpmaster.internal/ubuntu/ xenial/main libssl1.0.0 i386 1.0.2e-1ubuntu1 [908 kB]
Get:100 http://ftpmaster.internal/ubuntu/ xenial/main dmsetup i386 2:1.02.110-1ubuntu2 [60.9 kB]
Get:101 http://ftpmaster.internal/ubuntu/ xenial/main libgssapi-krb5-2 i386 1.13.2+dfsg-4 [129 kB]
Get:102 http://ftpmaster.internal/ubuntu/ xenial/main libkrb5-3 i386 1.13.2+dfsg-4 [298 kB]
Get:103 http://ftpmaster.internal/ubuntu/ xenial/main libkrb5support0 i386 1.13.2+dfsg-4 [32.0 kB]
Get:104 http://ftpmaster.internal/ubuntu/ xenial/main libk5crypto3 i386 1.13.2+dfsg-4 [83.4 kB]
Get:105 http://ftpmaster.internal/ubuntu/ xenial/main libkeyutils1 i386 1.5.9-8ubuntu1 [10.2 kB]
Get:106 http://ftpmaster.internal/ubuntu/ xenial/main libidn11 i386 1.32-3ubuntu1 [46.6 kB]
Get:107 http://ftpmaster.internal/ubuntu/ xenial/main libcurl3-gnutls i386 7.45.0-1ubuntu1 [203 kB]
Get:108 http://ftpmaster.internal/ubuntu/ xenial/main apt-transport-https i386 1.1.10 [27.2 kB]
Get:109 http://ftpmaster.internal/ubuntu/ xenial/main openssl i386 1.0.2e-1ubuntu1 [505 kB]
Get:110 http://ftpmaster.internal/ubuntu/ xenial/main advancecomp i386 1.20-1 [163 kB]
Get:111 http://ftpmaster.internal/ubuntu/ xenial/main cpp i386 4:5.2.1-16ubuntu2 [27.6 kB]
Get:112 http://ftpmaster.internal/ubuntu/ xenial/main dpkg-dev all 1.18.3ubuntu1 [583 kB]
Get:113 http://ftpmaster.internal/ubuntu/ xenial/main libdpkg-perl all 1.18.3ubuntu1 [195 kB]
Get:114 http://ftpmaster.internal/ubuntu/ xenial/main gcc i386 4:5.2.1-16ubuntu2 [5226 B]
Get:115 http://ftpmaster.internal/ubuntu/ xenial/main g++ i386 4:5.2.1-16ubuntu2 [1508 B]
Get:116 http://ftpmaster.internal/ubuntu/ xenial/main pkg-create-dbgsym all 0.70 [9046 B]
Get:117 http://ftpmaster.internal/ubuntu/ xenial/main pkgbinarymangler all 128 [42.2 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 131 MB in 18s (7030 kB/s)
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Preparing to unpack .../base-files_9.4ubuntu3_i386.deb ...
Unpacking base-files (9.4ubuntu3) over (7.2ubuntu11) ...
Setting up base-files (9.4ubuntu3) ...
Installing new version of config file /etc/debian_version ...
Installing new version of config file /etc/issue ...
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Updating /etc/profile to current default.
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Setting up bsdutils (1:2.27.1-1ubuntu3) ...
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dpkg: perl-modules: dependency problems, but removing anyway as you requested:
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Setting up binutils (2.25.90.20160101-1ubuntu2) ...
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Setting up libstdc++-5-dev:i386 (5.3.1-5ubuntu2) ...
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Setting up libprocps4:i386 (2:3.3.10-4ubuntu1) ...
Setting up procps (2:3.3.10-4ubuntu1) ...
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
Running in chroot, ignoring request.
invoke-rc.d: policy-rc.d denied execution of start.
Setting up udev (228-3ubuntu1) ...
Installing new version of config file /etc/init.d/udev ...
addgroup: The group `input' already exists as a system group. Exiting.
virtio network devices detected, disabling predictable interface names in /etc/systemd/network/50-virtio-kernel-names.link
Running in chroot, ignoring request.
invoke-rc.d: policy-rc.d denied execution of restart.
Removing obsolete conffile /etc/init.d/lvm2 ...
Setting up perl-modules-5.22 (5.22.1-3) ...
Setting up libperl5.22:i386 (5.22.1-3) ...
Setting up perl (5.22.1-3) ...
Setting up apt (1.1.10) ...
Installing new version of config file /etc/apt/apt.conf.d/01-vendor-ubuntu ...
Installing new version of config file /etc/apt/apt.conf.d/01autoremove ...
Installing new version of config file /etc/cron.daily/apt ...
Installing new version of config file /etc/kernel/postinst.d/apt-auto-removal ...
usermod: no changes
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Setting up libnih-dbus1:i386 (1.0.3-4.3ubuntu1) ...
Setting up libffi6:i386 (3.2.1-4) ...
Setting up libp11-kit0:i386 (0.23.2-3) ...
Setting up libtasn1-6:i386 (4.7-3) ...
Setting up libgnutls-deb0-28:i386 (3.3.18-1ubuntu1) ...
Setting up libldap-2.4-2:i386 (2.4.41+dfsg-1ubuntu3) ...
Setting up libpng12-0:i386 (1.2.54-1ubuntu1) ...
Setting up libsqlite3-0:i386 (3.10.0-1) ...
Setting up libssl1.0.0:i386 (1.0.2e-1ubuntu1) ...
Setting up dmsetup (2:1.02.110-1ubuntu2) ...
Setting up libkrb5support0:i386 (1.13.2+dfsg-4) ...
Setting up libk5crypto3:i386 (1.13.2+dfsg-4) ...
Setting up libkeyutils1:i386 (1.5.9-8ubuntu1) ...
Setting up libkrb5-3:i386 (1.13.2+dfsg-4) ...
Setting up libgssapi-krb5-2:i386 (1.13.2+dfsg-4) ...
Setting up libidn11:i386 (1.32-3ubuntu1) ...
Setting up libcurl3-gnutls:i386 (7.45.0-1ubuntu1) ...
Setting up apt-transport-https (1.1.10) ...
Setting up openssl (1.0.2e-1ubuntu1) ...
Setting up advancecomp (1.20-1) ...
Setting up cpp (4:5.2.1-16ubuntu2) ...
Setting up libdpkg-perl (1.18.3ubuntu1) ...
Setting up dpkg-dev (1.18.3ubuntu1) ...
Setting up gcc (4:5.2.1-16ubuntu2) ...
Setting up g++ (4:5.2.1-16ubuntu2) ...
Setting up pkg-create-dbgsym (0.70) ...
Setting up pkgbinarymangler (128) ...
Processing triggers for libc-bin (2.21-0ubuntu5) ...
Processing triggers for systemd (228-3ubuntu1) ...
RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-8831329', 'i386', 'xenial-proposed', '-c', 'chroot:autobuild', '--arch=i386', '--dist=xenial-proposed', '--purge=never', '--nolog', 'r-base_3.2.3-2.dsc']
Initiating build PACKAGEBUILD-8831329 with 4 jobs across 4 processor cores.
Kernel reported to sbuild: 3.19.0-43-generic #49~14.04.1-Ubuntu SMP Thu Dec 31 15:44:49 UTC 2015 i686
sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on lgw01-42.buildd

╔══════════════════════════════════════════════════════════════════════════════╗
║ r-base 3.2.3-2 (i386)                                      11 Jan 2016 12:42 ║
╚══════════════════════════════════════════════════════════════════════════════╝

Package: r-base
Version: 3.2.3-2
Source Version: 3.2.3-2
Distribution: xenial-proposed
Machine Architecture: amd64
Host Architecture: i386
Build Architecture: i386

I: NOTICE: Log filtering will replace 'build/r-base-8YGoFN/r-base-3.2.3' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/r-base-8YGoFN' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-8831329/chroot-autobuild' with '«CHROOT»'

┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files                                                           │
└──────────────────────────────────────────────────────────────────────────────┘


Local sources
─────────────

r-base_3.2.3-2.dsc exists in .; copying to chroot

Check architectures
───────────────────


Check dependencies
──────────────────

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-u_ts2U/apt_archive/sbuild-build-depends-core-dummy.deb'.
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver)                         │
└──────────────────────────────────────────────────────────────────────────────┘

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  libapt-pkg4.16 libisl13 libprocps3 udev
Use 'sudo apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 0 B/770 B of archives.
After this operation, 0 B of additional disk space will be used.
WARNING: The following packages cannot be authenticated!
  sbuild-build-depends-core-dummy
Authentication warning overridden.
Get:1 file:/«BUILDDIR»/resolver-u_ts2U/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [770 B]
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sbuild-build-depends-core-dummy.
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Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), gcc (>= 4:4.1.0), g++ (>= 4:4.1.0), gfortran (>= 4:4.1.0), libblas-dev, liblapack-dev (>= 3.1.1), tcl8.6-dev, tk8.6-dev, bison, groff-base, libncurses5-dev, libreadline-dev, debhelper (>= 7.2.3), texinfo (>= 4.1-2), libbz2-dev, liblzma-dev, libpcre3-dev, libcurl4-openssl-dev | libcurl4-dev, xdg-utils, zlib1g-dev, libpng-dev, libjpeg-dev, libx11-dev, libxt-dev, x11proto-core-dev, libpango1.0-dev, libcairo2-dev, libtiff5-dev, xvfb, xauth, xfonts-base, texlive-base, texlive-latex-base, texlive-generic-recommended, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, default-jdk, mpack, bash-completion
Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), gcc (>= 4:4.1.0), g++ (>= 4:4.1.0), gfortran (>= 4:4.1.0), libblas-dev, liblapack-dev (>= 3.1.1), tcl8.6-dev, tk8.6-dev, bison, groff-base, libncurses5-dev, libreadline-dev, debhelper (>= 7.2.3), texinfo (>= 4.1-2), libbz2-dev, liblzma-dev, libpcre3-dev, libcurl4-openssl-dev | libcurl4-dev, xdg-utils, zlib1g-dev, libpng-dev, libjpeg-dev, libx11-dev, libxt-dev, x11proto-core-dev, libpango1.0-dev, libcairo2-dev, libtiff5-dev, xvfb, xauth, xfonts-base, texlive-base, texlive-latex-base, texlive-generic-recommended, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, default-jdk, mpack, bash-completion
dpkg-deb: building package 'sbuild-build-depends-r-base-dummy' in '/«BUILDDIR»/resolver-QIxmL0/apt_archive/sbuild-build-depends-r-base-dummy.deb'.
Get:1 file:/«BUILDDIR»/resolver-QIxmL0/apt_archive ./ InRelease
Ign:1 file:/«BUILDDIR»/resolver-QIxmL0/apt_archive ./ InRelease
Get:2 file:/«BUILDDIR»/resolver-QIxmL0/apt_archive ./ Release [2119 B]
Get:2 file:/«BUILDDIR»/resolver-QIxmL0/apt_archive ./ Release [2119 B]
Get:3 file:/«BUILDDIR»/resolver-QIxmL0/apt_archive ./ Release.gpg
Ign:3 file:/«BUILDDIR»/resolver-QIxmL0/apt_archive ./ Release.gpg
Get:4 file:/«BUILDDIR»/resolver-QIxmL0/apt_archive ./ Sources [695 B]
Get:5 file:/«BUILDDIR»/resolver-QIxmL0/apt_archive ./ Packages [931 B]
Ign:4 file:/«BUILDDIR»/resolver-QIxmL0/apt_archive ./ Sources
Ign:5 file:/«BUILDDIR»/resolver-QIxmL0/apt_archive ./ Packages
Get:4 file:/«BUILDDIR»/resolver-QIxmL0/apt_archive ./ Sources [695 B]
Get:5 file:/«BUILDDIR»/resolver-QIxmL0/apt_archive ./ Packages [931 B]
Reading package lists...
W: The repository 'file:/«BUILDDIR»/resolver-QIxmL0/apt_archive ./ Release' is not signed.
Reading package lists...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-base build dependencies (apt-based resolver)                       │
└──────────────────────────────────────────────────────────────────────────────┘

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  libapt-pkg4.16 libisl13 libprocps3 udev
Use 'sudo apt autoremove' to remove them.
The following additional packages will be installed:
  bash-completion bison bsdmainutils ca-certificates-java debhelper
  default-jdk default-jre default-jre-headless dh-strip-nondeterminism file
  fontconfig fontconfig-config fonts-cabin fonts-comfortaa
  fonts-crosextra-caladea fonts-crosextra-carlito fonts-dejavu-core
  fonts-dejavu-extra fonts-ebgaramond fonts-ebgaramond-extra
  fonts-font-awesome fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia
  fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga
  fonts-gfs-solomos fonts-inconsolata fonts-junicode fonts-lato
  fonts-linuxlibertine fonts-lobster fonts-lobstertwo fonts-oflb-asana-math
  fonts-roboto fonts-sil-gentium fonts-sil-gentium-basic fonts-sil-gentiumplus
  fonts-stix gettext gettext-base gfortran gfortran-5 gir1.2-freedesktop
  gir1.2-glib-2.0 gir1.2-pango-1.0 groff-base intltool-debian java-common
  libarchive-zip-perl libasound2 libasound2-data libasprintf0v5 libasyncns0
  libatk-bridge2.0-0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0
  libatk1.0-data libatspi2.0-0 libavahi-client3 libavahi-common-data
  libavahi-common3 libbison-dev libblas-common libblas-dev libblas3 libbsd0
  libbz2-dev libcairo-gobject2 libcairo-script-interpreter2 libcairo2
  libcairo2-dev libcroco3 libcups2 libcupsfilters1 libcupsimage2 libcurl3
  libcurl4-openssl-dev libdatrie1 libdrm-amdgpu1 libdrm-intel1 libdrm-nouveau2
  libdrm-radeon1 libdrm2 libedit2 libelf1 libexpat1 libexpat1-dev
  libfile-stripnondeterminism-perl libflac8 libfontconfig1 libfontconfig1-dev
  libfontenc1 libfreetype6 libfreetype6-dev libgdk-pixbuf2.0-0
  libgdk-pixbuf2.0-common libgfortran-5-dev libgfortran3 libgif7
  libgirepository-1.0-1 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa
  libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libgraphite2-3
  libgs9 libgs9-common libgtk2.0-0 libgtk2.0-common libharfbuzz-dev
  libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libice-dev libice6
  libicu55 libijs-0.35 libintl-perl libjbig-dev libjbig0 libjbig2dec0
  libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev
  libjson-c2 libkpathsea6 liblapack-dev liblapack3 liblcms2-2 libllvm3.6v5
  liblzma-dev liblzo2-2 libmagic1 libncurses5-dev libnspr4 libnss3
  libnss3-nssdb libogg0 libpango-1.0-0 libpango1.0-dev libpangocairo-1.0-0
  libpangoft2-1.0-0 libpangoxft-1.0-0 libpaper-utils libpaper1 libpciaccess0
  libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpcsclite1 libpipeline1
  libpixman-1-0 libpixman-1-dev libpng12-dev libpoppler57 libpotrace0
  libptexenc1 libpthread-stubs0-dev libpulse0 libpython-stdlib
  libpython2.7-minimal libpython2.7-stdlib libreadline-dev libreadline6-dev
  libsctp1 libsigsegv2 libsm-dev libsm6 libsndfile1 libsynctex1 libtcl8.6
  libtexlua52 libtexluajit2 libtext-unidecode-perl libthai-data libthai0
  libtiff5 libtiff5-dev libtiffxx5 libtimedate-perl libtinfo-dev libtk8.6
  libunistring0 libvorbis0a libvorbisenc2 libwrap0 libx11-6 libx11-data
  libx11-dev libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-dri2-0
  libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-render0-dev
  libxcb-shape0 libxcb-shm0 libxcb-shm0-dev libxcb-sync1 libxcb1 libxcb1-dev
  libxcomposite1 libxcursor1 libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev
  libxext6 libxfixes3 libxfont1 libxft-dev libxft2 libxi6 libxinerama1
  libxkbfile1 libxml-libxml-perl libxml-namespacesupport-perl
  libxml-sax-base-perl libxml-sax-perl libxml2 libxmu6 libxmuu1 libxpm4
  libxrandr2 libxrender-dev libxrender1 libxshmfence1 libxss-dev libxss1
  libxt-dev libxt6 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libzzip-0-13 m4
  man-db mime-support mpack openjdk-7-jdk openjdk-7-jre openjdk-7-jre-headless
  pkg-config po-debconf poppler-data preview-latex-style python python-minimal
  python2.7 python2.7-minimal shared-mime-info t1utils tcl8.6 tcl8.6-dev
  tex-common texinfo texlive-base texlive-binaries texlive-extra-utils
  texlive-fonts-extra texlive-fonts-recommended texlive-generic-recommended
  texlive-latex-base texlive-latex-extra texlive-latex-recommended
  texlive-pictures tk8.6 tk8.6-dev ttf-adf-accanthis ttf-adf-gillius
  ttf-adf-universalis tzdata-java ucf x11-common x11-utils x11-xkb-utils
  x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-render-dev
  x11proto-scrnsaver-dev x11proto-xext-dev xauth xdg-utils xfonts-base
  xfonts-encodings xfonts-utils xkb-data xorg-sgml-doctools xserver-common
  xtrans-dev xvfb zlib1g-dev
Suggested packages:
  bison-doc wamerican | wordlist whois vacation dh-make fontforge gettext-doc
  autopoint gfortran-multilib gfortran-doc gfortran-5-multilib gfortran-5-doc
  libgfortran3-dbg groff equivs libasound2-plugins alsa-utils
  liblapack-doc-man liblapack-doc libcairo2-doc cups-common libcurl4-doc
  libcurl3-dbg libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssl-dev
  libglib2.0-doc fonts-droid texlive-lang-cjk librsvg2-common gvfs libice-doc
  libintl-xs-perl liblcms2-utils liblzma-doc ncurses-doc imagemagick
  libpango1.0-doc pciutils pcscd pulseaudio readline-doc lksctp-tools
  libsm-doc libxcb-doc libxext-doc libxt-doc less www-browser
  mail-transport-agent inews openjdk-7-demo openjdk-7-source visualvm
  icedtea-7-plugin icedtea-7-jre-jamvm libnss-mdns sun-java6-fonts
  fonts-ipafont-gothic fonts-ipafont-mincho ttf-wqy-microhei | ttf-wqy-zenhei
  fonts-indic libmail-box-perl poppler-utils ghostscript fonts-japanese-mincho
  | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic
  fonts-arphic-ukai fonts-arphic-uming fonts-nanum python-doc python-tk
  python2.7-doc binfmt-support tcl-tclreadline tcl8.6-doc texinfo-doc-nonfree
  perl-tk gv | postscript-viewer xpdf-reader | pdf-viewer xindy dvidvi dvipng
  fragmaster latexmk purifyeps chktex latexdiff lacheck cm-super
  libfile-which-perl libspreadsheet-parseexcel-perl python-pygments
  texlive-pstricks dot2tex libtcltk-ruby prerex tk8.6-doc mesa-utils gvfs-bin
Recommended packages:
  curl | wget | lynx-cur libasprintf-dev libgettextpo-dev at-spi2-core
  bzip2-doc libtxc-dxtn-s2tc0 | libtxc-dxtn0 xdg-user-dirs hicolor-icon-theme
  libgtk2.0-bin tcpd libx11-doc libxml-sax-expat-perl xml-core libgnome-2-0
  libgnomevfs2-0 libgconf-2-4 libmail-sendmail-perl lmodern ruby wish
  ghostscript libyaml-tiny-perl ruby | ruby-interpreter libfile-homedir-perl
  texlive-fonts-extra-doc tipa tex-gyre texlive-fonts-recommended-doc
  texlive-latex-base-doc texlive-latex-extra-doc texlive-latex-recommended-doc
  prosper texlive-pictures-doc tk xterm | x-terminal-emulator
  libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl
  x11-xserver-utils
The following NEW packages will be installed:
  bash-completion bison bsdmainutils ca-certificates-java debhelper
  default-jdk default-jre default-jre-headless dh-strip-nondeterminism file
  fontconfig fontconfig-config fonts-cabin fonts-comfortaa
  fonts-crosextra-caladea fonts-crosextra-carlito fonts-dejavu-core
  fonts-dejavu-extra fonts-ebgaramond fonts-ebgaramond-extra
  fonts-font-awesome fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia
  fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga
  fonts-gfs-solomos fonts-inconsolata fonts-junicode fonts-lato
  fonts-linuxlibertine fonts-lobster fonts-lobstertwo fonts-oflb-asana-math
  fonts-roboto fonts-sil-gentium fonts-sil-gentium-basic fonts-sil-gentiumplus
  fonts-stix gettext gettext-base gfortran gfortran-5 gir1.2-freedesktop
  gir1.2-glib-2.0 gir1.2-pango-1.0 groff-base intltool-debian java-common
  libarchive-zip-perl libasound2 libasound2-data libasprintf0v5 libasyncns0
  libatk-bridge2.0-0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0
  libatk1.0-data libatspi2.0-0 libavahi-client3 libavahi-common-data
  libavahi-common3 libbison-dev libblas-common libblas-dev libblas3 libbsd0
  libbz2-dev libcairo-gobject2 libcairo-script-interpreter2 libcairo2
  libcairo2-dev libcroco3 libcups2 libcupsfilters1 libcupsimage2 libcurl3
  libcurl4-openssl-dev libdatrie1 libdrm-amdgpu1 libdrm-intel1 libdrm-nouveau2
  libdrm-radeon1 libdrm2 libedit2 libelf1 libexpat1 libexpat1-dev
  libfile-stripnondeterminism-perl libflac8 libfontconfig1 libfontconfig1-dev
  libfontenc1 libfreetype6 libfreetype6-dev libgdk-pixbuf2.0-0
  libgdk-pixbuf2.0-common libgfortran-5-dev libgfortran3 libgif7
  libgirepository-1.0-1 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa
  libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libgraphite2-3
  libgs9 libgs9-common libgtk2.0-0 libgtk2.0-common libharfbuzz-dev
  libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libice-dev libice6
  libicu55 libijs-0.35 libintl-perl libjbig-dev libjbig0 libjbig2dec0
  libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev
  libjson-c2 libkpathsea6 liblapack-dev liblapack3 liblcms2-2 libllvm3.6v5
  liblzma-dev liblzo2-2 libmagic1 libncurses5-dev libnspr4 libnss3
  libnss3-nssdb libogg0 libpango-1.0-0 libpango1.0-dev libpangocairo-1.0-0
  libpangoft2-1.0-0 libpangoxft-1.0-0 libpaper-utils libpaper1 libpciaccess0
  libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpcsclite1 libpipeline1
  libpixman-1-0 libpixman-1-dev libpng12-dev libpoppler57 libpotrace0
  libptexenc1 libpthread-stubs0-dev libpulse0 libpython-stdlib
  libpython2.7-minimal libpython2.7-stdlib libreadline-dev libreadline6-dev
  libsctp1 libsigsegv2 libsm-dev libsm6 libsndfile1 libsynctex1 libtcl8.6
  libtexlua52 libtexluajit2 libtext-unidecode-perl libthai-data libthai0
  libtiff5 libtiff5-dev libtiffxx5 libtimedate-perl libtinfo-dev libtk8.6
  libunistring0 libvorbis0a libvorbisenc2 libwrap0 libx11-6 libx11-data
  libx11-dev libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-dri2-0
  libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-render0-dev
  libxcb-shape0 libxcb-shm0 libxcb-shm0-dev libxcb-sync1 libxcb1 libxcb1-dev
  libxcomposite1 libxcursor1 libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev
  libxext6 libxfixes3 libxfont1 libxft-dev libxft2 libxi6 libxinerama1
  libxkbfile1 libxml-libxml-perl libxml-namespacesupport-perl
  libxml-sax-base-perl libxml-sax-perl libxml2 libxmu6 libxmuu1 libxpm4
  libxrandr2 libxrender-dev libxrender1 libxshmfence1 libxss-dev libxss1
  libxt-dev libxt6 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libzzip-0-13 m4
  man-db mime-support mpack openjdk-7-jdk openjdk-7-jre openjdk-7-jre-headless
  pkg-config po-debconf poppler-data preview-latex-style python python-minimal
  python2.7 python2.7-minimal sbuild-build-depends-r-base-dummy
  shared-mime-info t1utils tcl8.6 tcl8.6-dev tex-common texinfo texlive-base
  texlive-binaries texlive-extra-utils texlive-fonts-extra
  texlive-fonts-recommended texlive-generic-recommended texlive-latex-base
  texlive-latex-extra texlive-latex-recommended texlive-pictures tk8.6
  tk8.6-dev ttf-adf-accanthis ttf-adf-gillius ttf-adf-universalis tzdata-java
  ucf x11-common x11-utils x11-xkb-utils x11proto-core-dev x11proto-input-dev
  x11proto-kb-dev x11proto-render-dev x11proto-scrnsaver-dev x11proto-xext-dev
  xauth xdg-utils xfonts-base xfonts-encodings xfonts-utils xkb-data
  xorg-sgml-doctools xserver-common xtrans-dev xvfb zlib1g-dev
0 upgraded, 309 newly installed, 0 to remove and 0 not upgraded.
Need to get 491 MB/491 MB of archives.
After this operation, 1545 MB of additional disk space will be used.
WARNING: The following packages cannot be authenticated!
  sbuild-build-depends-r-base-dummy
Authentication warning overridden.
Get:1 file:/«BUILDDIR»/resolver-QIxmL0/apt_archive ./ sbuild-build-depends-r-base-dummy 0.invalid.0 [1178 B]
Get:2 http://ftpmaster.internal/ubuntu xenial/main i386 libjson-c2 i386 0.11-4ubuntu2 [23.9 kB]
Get:3 http://ftpmaster.internal/ubuntu xenial/main i386 bash-completion all 1:2.1-4.2ubuntu1 [153 kB]
Get:4 http://ftpmaster.internal/ubuntu xenial/main i386 libxau6 i386 1:1.0.8-1 [8352 B]
Get:5 http://ftpmaster.internal/ubuntu xenial/main i386 libxdmcp6 i386 1:1.1.2-1.1 [11.4 kB]
Get:6 http://ftpmaster.internal/ubuntu xenial/main i386 libxcb1 i386 1.11.1-1ubuntu1 [44.1 kB]
Get:7 http://ftpmaster.internal/ubuntu xenial/main i386 libx11-data all 2:1.6.3-1ubuntu2 [113 kB]
Get:8 http://ftpmaster.internal/ubuntu xenial/main i386 libx11-6 i386 2:1.6.3-1ubuntu2 [592 kB]
Get:9 http://ftpmaster.internal/ubuntu xenial/main i386 libxext6 i386 2:1.3.3-1 [31.6 kB]
Get:10 http://ftpmaster.internal/ubuntu xenial/main i386 groff-base i386 1.22.3-5 [1152 kB]
Get:11 http://ftpmaster.internal/ubuntu xenial/main i386 bsdmainutils i386 9.0.6ubuntu1 [175 kB]
Get:12 http://ftpmaster.internal/ubuntu xenial/main i386 libpipeline1 i386 1.4.1-2 [26.5 kB]
Get:13 http://ftpmaster.internal/ubuntu xenial/main i386 man-db i386 2.7.5-1 [865 kB]
Get:14 http://ftpmaster.internal/ubuntu xenial/main i386 fonts-dejavu-core all 2.35-1 [1039 kB]
Get:15 http://ftpmaster.internal/ubuntu xenial/main i386 fonts-freefont-ttf all 20120503-4 [4140 kB]
Get:16 http://ftpmaster.internal/ubuntu xenial/main i386 ucf all 3.0031 [52.7 kB]
Get:17 http://ftpmaster.internal/ubuntu xenial/main i386 fontconfig-config all 2.11.1-0ubuntu6 [48.7 kB]
Get:18 http://ftpmaster.internal/ubuntu xenial/main i386 libexpat1 i386 2.1.0-7 [74.3 kB]
Get:19 http://ftpmaster.internal/ubuntu xenial/main i386 libfreetype6 i386 2.5.2-4ubuntu2 [326 kB]
Get:20 http://ftpmaster.internal/ubuntu xenial/main i386 libfontconfig1 i386 2.11.1-0ubuntu6 [135 kB]
Get:21 http://ftpmaster.internal/ubuntu xenial/main i386 fontconfig i386 2.11.1-0ubuntu6 [176 kB]
Get:22 http://ftpmaster.internal/ubuntu xenial/main i386 fonts-lato all 2.0-1 [2693 kB]
Get:23 http://ftpmaster.internal/ubuntu xenial/universe i386 fonts-roboto all 1:4.4.4r2-6ubuntu1 [368 kB]
Get:24 http://ftpmaster.internal/ubuntu xenial/main i386 libasyncns0 i386 0.8-5build1 [12.7 kB]
Get:25 http://ftpmaster.internal/ubuntu xenial/main i386 libgraphite2-3 i386 1.2.4-3ubuntu1 [57.5 kB]
Get:26 http://ftpmaster.internal/ubuntu xenial/main i386 x11-common all 1:7.7+12ubuntu1 [22.4 kB]
Get:27 http://ftpmaster.internal/ubuntu xenial/main i386 libice6 i386 2:1.0.9-1 [38.2 kB]
Get:28 http://ftpmaster.internal/ubuntu xenial/main i386 libjpeg-turbo8 i386 1.4.2-0ubuntu1 [117 kB]
Get:29 http://ftpmaster.internal/ubuntu xenial/main i386 liblcms2-2 i386 2.6-3ubuntu2 [147 kB]
Get:30 http://ftpmaster.internal/ubuntu xenial/main i386 liblzo2-2 i386 2.08-1.2 [52.7 kB]
Get:31 http://ftpmaster.internal/ubuntu xenial/main i386 libogg0 i386 1.3.2-1 [16.2 kB]
Get:32 http://ftpmaster.internal/ubuntu xenial/main i386 libpcrecpp0v5 i386 2:8.35-7.1ubuntu1 [16.2 kB]
Get:33 http://ftpmaster.internal/ubuntu xenial/main i386 libsigsegv2 i386 2.10-4 [14.0 kB]
Get:34 http://ftpmaster.internal/ubuntu xenial/main i386 libsm6 i386 2:1.2.2-1 [14.8 kB]
Get:35 http://ftpmaster.internal/ubuntu xenial/main i386 libtcl8.6 i386 8.6.4+dfsg-2ubuntu1 [929 kB]
Get:36 http://ftpmaster.internal/ubuntu xenial/main i386 libxrender1 i386 1:0.9.9-0ubuntu1 [19.2 kB]
Get:37 http://ftpmaster.internal/ubuntu xenial/main i386 libxft2 i386 2.3.2-1 [35.5 kB]
Get:38 http://ftpmaster.internal/ubuntu xenial/main i386 libxss1 i386 1:1.2.2-1 [8566 B]
Get:39 http://ftpmaster.internal/ubuntu xenial/main i386 libtk8.6 i386 8.6.4+dfsg-2ubuntu1 [726 kB]
Get:40 http://ftpmaster.internal/ubuntu xenial/main i386 libunistring0 i386 0.9.3-5.2ubuntu1 [277 kB]
Get:41 http://ftpmaster.internal/ubuntu xenial/main i386 libwrap0 i386 7.6.q-25 [45.8 kB]
Get:42 http://ftpmaster.internal/ubuntu xenial/main i386 libxcomposite1 i386 1:0.4.4-1 [7594 B]
Get:43 http://ftpmaster.internal/ubuntu xenial/main i386 libxfixes3 i386 1:5.0.1-2 [11.4 kB]
Get:44 http://ftpmaster.internal/ubuntu xenial/main i386 libxcursor1 i386 1:1.1.14-1 [22.8 kB]
Get:45 http://ftpmaster.internal/ubuntu xenial/main i386 libxdamage1 i386 1:1.1.4-2 [6812 B]
Get:46 http://ftpmaster.internal/ubuntu xenial/main i386 libfontenc1 i386 1:1.1.3-1 [14.0 kB]
Get:47 http://ftpmaster.internal/ubuntu xenial/main i386 libxfont1 i386 1:1.5.1-1 [97.3 kB]
Get:48 http://ftpmaster.internal/ubuntu xenial/main i386 libxinerama1 i386 2:1.1.3-1 [7900 B]
Get:49 http://ftpmaster.internal/ubuntu xenial/main i386 libxpm4 i386 1:3.5.11-1 [32.1 kB]
Get:50 http://ftpmaster.internal/ubuntu xenial/main i386 libxshmfence1 i386 1.2-1 [5164 B]
Get:51 http://ftpmaster.internal/ubuntu xenial/main i386 libxtst6 i386 2:1.2.2-1 [13.8 kB]
Get:52 http://ftpmaster.internal/ubuntu xenial/main i386 libxv1 i386 2:1.0.10-1 [10.2 kB]
Get:53 http://ftpmaster.internal/ubuntu xenial/main i386 libxxf86dga1 i386 2:1.1.4-1 [13.3 kB]
Get:54 http://ftpmaster.internal/ubuntu xenial/main i386 libxxf86vm1 i386 1:1.1.4-1 [11.3 kB]
Get:55 http://ftpmaster.internal/ubuntu xenial/main i386 libzzip-0-13 i386 0.13.62-3 [27.5 kB]
Get:56 http://ftpmaster.internal/ubuntu xenial/main i386 java-common all 0.52.1 [131 kB]
Get:57 http://ftpmaster.internal/ubuntu xenial/main i386 default-jre-headless i386 2:1.7-52.1 [4000 B]
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Get:59 http://ftpmaster.internal/ubuntu xenial/main i386 libnss3-nssdb all 2:3.21-1ubuntu2 [10.6 kB]
Get:60 http://ftpmaster.internal/ubuntu xenial/main i386 libnss3 i386 2:3.21-1ubuntu2 [1190 kB]
Get:61 http://ftpmaster.internal/ubuntu xenial/main i386 ca-certificates-java all 20140324 [12.3 kB]
Get:62 http://ftpmaster.internal/ubuntu xenial/main i386 tzdata-java all 2015g-1 [69.1 kB]
Get:63 http://ftpmaster.internal/ubuntu xenial/main i386 libavahi-common-data i386 0.6.32~rc+dfsg-1ubuntu2 [21.7 kB]
Get:64 http://ftpmaster.internal/ubuntu xenial/main i386 libavahi-common3 i386 0.6.32~rc+dfsg-1ubuntu2 [23.5 kB]
Get:65 http://ftpmaster.internal/ubuntu xenial/main i386 libavahi-client3 i386 0.6.32~rc+dfsg-1ubuntu2 [27.1 kB]
Get:66 http://ftpmaster.internal/ubuntu xenial/main i386 libcups2 i386 2.1.2-1 [212 kB]
Get:67 http://ftpmaster.internal/ubuntu xenial/main i386 libjpeg8 i386 8c-2ubuntu8 [2188 B]
Get:68 http://ftpmaster.internal/ubuntu xenial/main i386 libglib2.0-0 i386 2.47.3-3 [1180 kB]
Get:69 http://ftpmaster.internal/ubuntu xenial/main i386 libpcsclite1 i386 1.8.14-1ubuntu1 [22.9 kB]
Get:70 http://ftpmaster.internal/ubuntu xenial/main i386 libflac8 i386 1.3.1-4 [154 kB]
Get:71 http://ftpmaster.internal/ubuntu xenial/main i386 libvorbis0a i386 1.3.4-3 [85.5 kB]
Get:72 http://ftpmaster.internal/ubuntu xenial/main i386 libvorbisenc2 i386 1.3.4-3 [64.4 kB]
Get:73 http://ftpmaster.internal/ubuntu xenial/main i386 libsndfile1 i386 1.0.25-10 [157 kB]
Get:74 http://ftpmaster.internal/ubuntu xenial/main i386 libpulse0 i386 1:7.1-1ubuntu3 [250 kB]
Get:75 http://ftpmaster.internal/ubuntu xenial/main i386 libsctp1 i386 1.0.16+dfsg-3 [8406 B]
Get:76 http://ftpmaster.internal/ubuntu xenial/main i386 openjdk-7-jre-headless i386 7u91-2.6.3-3 [41.5 MB]
Get:77 http://ftpmaster.internal/ubuntu xenial/main i386 poppler-data all 0.4.7-7 [1495 kB]
Get:78 http://ftpmaster.internal/ubuntu xenial/main i386 libpython2.7-minimal i386 2.7.11-2 [334 kB]
Get:79 http://ftpmaster.internal/ubuntu xenial/main i386 python2.7-minimal i386 2.7.11-2 [1277 kB]
Get:80 http://ftpmaster.internal/ubuntu xenial/main i386 python-minimal i386 2.7.11-1 [28.2 kB]
Get:81 http://ftpmaster.internal/ubuntu xenial/main i386 mime-support all 3.59ubuntu1 [31.0 kB]
Get:82 http://ftpmaster.internal/ubuntu xenial/main i386 libpython2.7-stdlib i386 2.7.11-2 [1892 kB]
Get:83 http://ftpmaster.internal/ubuntu xenial/main i386 python2.7 i386 2.7.11-2 [216 kB]
Get:84 http://ftpmaster.internal/ubuntu xenial/main i386 libpython-stdlib i386 2.7.11-1 [7664 B]
Get:85 http://ftpmaster.internal/ubuntu xenial/main i386 python i386 2.7.11-1 [137 kB]
Get:86 http://ftpmaster.internal/ubuntu xenial/main i386 libjbig0 i386 2.1-3.1 [27.0 kB]
Get:87 http://ftpmaster.internal/ubuntu xenial/main i386 libmagic1 i386 1:5.25-2ubuntu1 [222 kB]
Get:88 http://ftpmaster.internal/ubuntu xenial/main i386 file i386 1:5.25-2ubuntu1 [21.1 kB]
Get:89 http://ftpmaster.internal/ubuntu xenial/main i386 libbsd0 i386 0.8.1-1 [45.3 kB]
Get:90 http://ftpmaster.internal/ubuntu xenial/main i386 xkb-data all 2.12-1ubuntu1 [297 kB]
Get:91 http://ftpmaster.internal/ubuntu xenial/main i386 libasprintf0v5 i386 0.19.6-1ubuntu1 [6972 B]
Get:92 http://ftpmaster.internal/ubuntu xenial/main i386 gettext-base i386 0.19.6-1ubuntu1 [49.5 kB]
Get:93 http://ftpmaster.internal/ubuntu xenial/main i386 libgirepository-1.0-1 i386 1.46.0-3ubuntu1 [97.4 kB]
Get:94 http://ftpmaster.internal/ubuntu xenial/main i386 gir1.2-glib-2.0 i386 1.46.0-3ubuntu1 [127 kB]
Get:95 http://ftpmaster.internal/ubuntu xenial/main i386 libdrm2 i386 2.4.65-3 [30.0 kB]
Get:96 http://ftpmaster.internal/ubuntu xenial/main i386 libedit2 i386 3.1-20150325-1ubuntu1 [80.9 kB]
Get:97 http://ftpmaster.internal/ubuntu xenial/main i386 libelf1 i386 0.164-1 [45.5 kB]
Get:98 http://ftpmaster.internal/ubuntu xenial/main i386 libglib2.0-data all 2.47.3-3 [129 kB]
Get:99 http://ftpmaster.internal/ubuntu xenial/main i386 libicu55 i386 55.1-6ubuntu1 [7755 kB]
Get:100 http://ftpmaster.internal/ubuntu xenial/main i386 libxml2 i386 2.9.2+zdfsg1-4ubuntu2 [730 kB]
Get:101 http://ftpmaster.internal/ubuntu xenial/main i386 libxmuu1 i386 2:1.1.2-2 [9988 B]
Get:102 http://ftpmaster.internal/ubuntu xenial/main i386 shared-mime-info i386 1.5-2 [406 kB]
Get:103 http://ftpmaster.internal/ubuntu xenial/main i386 xauth i386 1:1.0.9-1ubuntu2 [23.0 kB]
Get:104 http://ftpmaster.internal/ubuntu xenial/main i386 m4 i386 1.4.17-5 [195 kB]
Get:105 http://ftpmaster.internal/ubuntu xenial/main i386 libbison-dev i386 2:3.0.4.dfsg-1 [338 kB]
Get:106 http://ftpmaster.internal/ubuntu xenial/main i386 bison i386 2:3.0.4.dfsg-1 [256 kB]
Get:107 http://ftpmaster.internal/ubuntu xenial/main i386 libcroco3 i386 0.6.11-1 [87.8 kB]
Get:108 http://ftpmaster.internal/ubuntu xenial/main i386 gettext i386 0.19.6-1ubuntu1 [1072 kB]
Get:109 http://ftpmaster.internal/ubuntu xenial/main i386 intltool-debian all 0.35.0+20060710.4 [24.9 kB]
Get:110 http://ftpmaster.internal/ubuntu xenial/main i386 po-debconf all 1.0.19 [234 kB]
Get:111 http://ftpmaster.internal/ubuntu xenial/main i386 libarchive-zip-perl all 1.56-2 [84.1 kB]
Get:112 http://ftpmaster.internal/ubuntu xenial/main i386 libfile-stripnondeterminism-perl all 0.014-1 [10.1 kB]
Get:113 http://ftpmaster.internal/ubuntu xenial/main i386 libtimedate-perl all 2.3000-2 [37.5 kB]
Get:114 http://ftpmaster.internal/ubuntu xenial/main i386 dh-strip-nondeterminism all 0.014-1 [5596 B]
Get:115 http://ftpmaster.internal/ubuntu xenial/main i386 debhelper all 9.20151225ubuntu1 [744 kB]
Get:116 http://ftpmaster.internal/ubuntu xenial/main i386 libasound2-data all 1.1.0-0ubuntu1 [29.4 kB]
Get:117 http://ftpmaster.internal/ubuntu xenial/main i386 libasound2 i386 1.1.0-0ubuntu1 [370 kB]
Get:118 http://ftpmaster.internal/ubuntu xenial/main i386 libtiff5 i386 4.0.6-1 [154 kB]
Get:119 http://ftpmaster.internal/ubuntu xenial/main i386 libgdk-pixbuf2.0-common all 2.32.2-1ubuntu1 [9996 B]
Get:120 http://ftpmaster.internal/ubuntu xenial/main i386 libgdk-pixbuf2.0-0 i386 2.32.2-1ubuntu1 [168 kB]
Get:121 http://ftpmaster.internal/ubuntu xenial/main i386 libgif7 i386 5.1.1-0.2 [30.9 kB]
Get:122 http://ftpmaster.internal/ubuntu xenial/main i386 libgtk2.0-common all 2.24.29-1ubuntu1 [122 kB]
Get:123 http://ftpmaster.internal/ubuntu xenial/main i386 libatk1.0-data all 2.18.0-1 [17.1 kB]
Get:124 http://ftpmaster.internal/ubuntu xenial/main i386 libatk1.0-0 i386 2.18.0-1 [57.5 kB]
Get:125 http://ftpmaster.internal/ubuntu xenial/main i386 libpixman-1-0 i386 0.33.4-1 [210 kB]
Get:126 http://ftpmaster.internal/ubuntu xenial/main i386 libxcb-render0 i386 1.11.1-1ubuntu1 [12.2 kB]
Get:127 http://ftpmaster.internal/ubuntu xenial/main i386 libxcb-shm0 i386 1.11.1-1ubuntu1 [5754 B]
Get:128 http://ftpmaster.internal/ubuntu xenial/main i386 libcairo2 i386 1.14.6-1 [613 kB]
Get:129 http://ftpmaster.internal/ubuntu xenial/main i386 libthai-data all 0.1.24-1 [131 kB]
Get:130 http://ftpmaster.internal/ubuntu xenial/main i386 libdatrie1 i386 0.2.10-1 [18.5 kB]
Get:131 http://ftpmaster.internal/ubuntu xenial/main i386 libthai0 i386 0.1.24-1 [18.0 kB]
Get:132 http://ftpmaster.internal/ubuntu xenial/main i386 libpango-1.0-0 i386 1.38.1-1 [154 kB]
Get:133 http://ftpmaster.internal/ubuntu xenial/main i386 libharfbuzz0b i386 1.0.1-1build2 [148 kB]
Get:134 http://ftpmaster.internal/ubuntu xenial/main i386 libpangoft2-1.0-0 i386 1.38.1-1 [36.5 kB]
Get:135 http://ftpmaster.internal/ubuntu xenial/main i386 libpangocairo-1.0-0 i386 1.38.1-1 [22.5 kB]
Get:136 http://ftpmaster.internal/ubuntu xenial/main i386 libxi6 i386 2:1.7.5-1 [31.2 kB]
Get:137 http://ftpmaster.internal/ubuntu xenial/main i386 libxrandr2 i386 2:1.5.0-1 [19.1 kB]
Get:138 http://ftpmaster.internal/ubuntu xenial/main i386 libgtk2.0-0 i386 2.24.29-1ubuntu1 [1901 kB]
Get:139 http://ftpmaster.internal/ubuntu xenial/main i386 libglapi-mesa i386 11.0.8-1ubuntu1 [22.3 kB]
Get:140 http://ftpmaster.internal/ubuntu xenial/main i386 libx11-xcb1 i386 2:1.6.3-1ubuntu2 [8944 B]
Get:141 http://ftpmaster.internal/ubuntu xenial/main i386 libxcb-dri2-0 i386 1.11.1-1ubuntu1 [7292 B]
Get:142 http://ftpmaster.internal/ubuntu xenial/main i386 libxcb-dri3-0 i386 1.11.1-1ubuntu1 [5392 B]
Get:143 http://ftpmaster.internal/ubuntu xenial/main i386 libxcb-glx0 i386 1.11.1-1ubuntu1 [22.3 kB]
Get:144 http://ftpmaster.internal/ubuntu xenial/main i386 libxcb-present0 i386 1.11.1-1ubuntu1 [5396 B]
Get:145 http://ftpmaster.internal/ubuntu xenial/main i386 libxcb-sync1 i386 1.11.1-1ubuntu1 [8702 B]
Get:146 http://ftpmaster.internal/ubuntu xenial/main i386 libdrm-amdgpu1 i386 2.4.65-3 [18.5 kB]
Get:147 http://ftpmaster.internal/ubuntu xenial/main i386 libpciaccess0 i386 0.13.4-1 [20.3 kB]
Get:148 http://ftpmaster.internal/ubuntu xenial/main i386 libdrm-intel1 i386 2.4.65-3 [58.6 kB]
Get:149 http://ftpmaster.internal/ubuntu xenial/main i386 libdrm-nouveau2 i386 2.4.65-3 [15.7 kB]
Get:150 http://ftpmaster.internal/ubuntu xenial/main i386 libdrm-radeon1 i386 2.4.65-3 [23.1 kB]
Get:151 http://ftpmaster.internal/ubuntu xenial/main i386 libllvm3.6v5 i386 1:3.6.2-3ubuntu1 [9008 kB]
Get:152 http://ftpmaster.internal/ubuntu xenial/main i386 libgl1-mesa-dri i386 11.0.8-1ubuntu1 [4593 kB]
Get:153 http://ftpmaster.internal/ubuntu xenial/main i386 libgl1-mesa-glx i386 11.0.8-1ubuntu1 [154 kB]
Get:154 http://ftpmaster.internal/ubuntu xenial/main i386 libatspi2.0-0 i386 2.18.3-1ubuntu1 [60.8 kB]
Get:155 http://ftpmaster.internal/ubuntu xenial/main i386 libatk-bridge2.0-0 i386 2.18.1-1ubuntu1 [57.8 kB]
Get:156 http://ftpmaster.internal/ubuntu xenial/main i386 libxt6 i386 1:1.1.5-0ubuntu1 [164 kB]
Get:157 http://ftpmaster.internal/ubuntu xenial/main i386 libxmu6 i386 2:1.1.2-2 [48.4 kB]
Get:158 http://ftpmaster.internal/ubuntu xenial/main i386 libxaw7 i386 2:1.0.13-1 [182 kB]
Get:159 http://ftpmaster.internal/ubuntu xenial/main i386 libxcb-shape0 i386 1.11.1-1ubuntu1 [5944 B]
Get:160 http://ftpmaster.internal/ubuntu xenial/main i386 x11-utils i386 7.7+3 [190 kB]
Get:161 http://ftpmaster.internal/ubuntu xenial/main i386 libatk-wrapper-java all 0.33.3-5 [33.7 kB]
Get:162 http://ftpmaster.internal/ubuntu xenial/main i386 libatk-wrapper-java-jni i386 0.33.3-5 [29.4 kB]
Get:163 http://ftpmaster.internal/ubuntu xenial/main i386 openjdk-7-jre i386 7u91-2.6.3-3 [170 kB]
Get:164 http://ftpmaster.internal/ubuntu xenial/main i386 default-jre i386 2:1.7-52.1 [966 B]
Get:165 http://ftpmaster.internal/ubuntu xenial/main i386 openjdk-7-jdk i386 7u91-2.6.3-3 [16.4 MB]
Get:166 http://ftpmaster.internal/ubuntu xenial/main i386 default-jdk i386 2:1.7-52.1 [960 B]
Get:167 http://ftpmaster.internal/ubuntu xenial/universe i386 fonts-cabin all 1.5-2 [140 kB]
Get:168 http://ftpmaster.internal/ubuntu xenial/universe i386 fonts-comfortaa all 2.003-1 [131 kB]
Get:169 http://ftpmaster.internal/ubuntu xenial/universe i386 fonts-crosextra-caladea all 20130214-1 [82.3 kB]
Get:170 http://ftpmaster.internal/ubuntu xenial/universe i386 fonts-crosextra-carlito all 20130920-1 [742 kB]
Get:171 http://ftpmaster.internal/ubuntu xenial/main i386 fonts-dejavu-extra all 2.35-1 [1749 kB]
Get:172 http://ftpmaster.internal/ubuntu xenial/universe i386 fonts-ebgaramond all 0.015+git20130628-3 [651 kB]
Get:173 http://ftpmaster.internal/ubuntu xenial/universe i386 fonts-ebgaramond-extra all 0.015+git20130628-3 [933 kB]
Get:174 http://ftpmaster.internal/ubuntu xenial/main i386 fonts-font-awesome all 4.4.0~dfsg-1 [491 kB]
Get:175 http://ftpmaster.internal/ubuntu xenial/universe i386 fonts-freefont-otf all 20120503-4 [3068 kB]
Get:176 http://ftpmaster.internal/ubuntu xenial/universe i386 fonts-gfs-artemisia all 1.1-5 [260 kB]
Get:177 http://ftpmaster.internal/ubuntu xenial/universe i386 fonts-gfs-complutum all 1.1-6 [41.6 kB]
Get:178 http://ftpmaster.internal/ubuntu xenial/universe i386 fonts-gfs-didot all 1.1-6 [278 kB]
Get:179 http://ftpmaster.internal/ubuntu xenial/universe i386 fonts-gfs-neohellenic all 1.1-6 [215 kB]
Get:180 http://ftpmaster.internal/ubuntu xenial/universe i386 fonts-gfs-olga all 1.1-5 [33.4 kB]
Get:181 http://ftpmaster.internal/ubuntu xenial/universe i386 fonts-gfs-solomos all 1.1-5 [40.7 kB]
Get:182 http://ftpmaster.internal/ubuntu xenial/universe i386 fonts-inconsolata all 001.010-5 [61.8 kB]
Get:183 http://ftpmaster.internal/ubuntu xenial/universe i386 fonts-junicode all 0.7.8-2 [642 kB]
Get:184 http://ftpmaster.internal/ubuntu xenial/universe i386 fonts-linuxlibertine all 5.3.0-2 [1688 kB]
Get:185 http://ftpmaster.internal/ubuntu xenial/universe i386 fonts-lobster all 2.0-2 [38.7 kB]
Get:186 http://ftpmaster.internal/ubuntu xenial/universe i386 fonts-lobstertwo all 2.0-2 [92.7 kB]
Get:187 http://ftpmaster.internal/ubuntu xenial/universe i386 fonts-oflb-asana-math all 000.907-6 [246 kB]
Get:188 http://ftpmaster.internal/ubuntu xenial/universe i386 fonts-sil-gentium all 20081126:1.03-1 [247 kB]
Get:189 http://ftpmaster.internal/ubuntu xenial/universe i386 fonts-sil-gentium-basic all 1.1-7 [379 kB]
Get:190 http://ftpmaster.internal/ubuntu xenial/universe i386 fonts-sil-gentiumplus all 5.000-1 [2805 kB]
Get:191 http://ftpmaster.internal/ubuntu xenial/main i386 libgfortran3 i386 5.3.1-5ubuntu2 [250 kB]
Get:192 http://ftpmaster.internal/ubuntu xenial/main i386 libgfortran-5-dev i386 5.3.1-5ubuntu2 [276 kB]
Get:193 http://ftpmaster.internal/ubuntu xenial/main i386 gfortran-5 i386 5.3.1-5ubuntu2 [29.2 MB]
Get:194 http://ftpmaster.internal/ubuntu xenial/main i386 gfortran i386 4:5.2.1-16ubuntu2 [1286 B]
Get:195 http://ftpmaster.internal/ubuntu xenial/main i386 gir1.2-freedesktop i386 1.46.0-3ubuntu1 [5732 B]
Get:196 http://ftpmaster.internal/ubuntu xenial/main i386 libpangoxft-1.0-0 i386 1.38.1-1 [15.9 kB]
Get:197 http://ftpmaster.internal/ubuntu xenial/main i386 gir1.2-pango-1.0 i386 1.38.1-1 [21.0 kB]
Get:198 http://ftpmaster.internal/ubuntu xenial-proposed/main i386 libblas-common i386 3.6.0-2 [5812 B]
Get:199 http://ftpmaster.internal/ubuntu xenial-proposed/main i386 libblas3 i386 3.6.0-2 [130 kB]
Get:200 http://ftpmaster.internal/ubuntu xenial-proposed/main i386 libblas-dev i386 3.6.0-2 [129 kB]
Get:201 http://ftpmaster.internal/ubuntu xenial/main i386 libbz2-dev i386 1.0.6-8 [28.7 kB]
Get:202 http://ftpmaster.internal/ubuntu xenial/main i386 libcairo-gobject2 i386 1.14.6-1 [16.6 kB]
Get:203 http://ftpmaster.internal/ubuntu xenial/main i386 libcairo-script-interpreter2 i386 1.14.6-1 [58.5 kB]
Get:204 http://ftpmaster.internal/ubuntu xenial/main i386 libexpat1-dev i386 2.1.0-7 [116 kB]
Get:205 http://ftpmaster.internal/ubuntu xenial/main i386 zlib1g-dev i386 1:1.2.8.dfsg-2ubuntu4 [167 kB]
Get:206 http://ftpmaster.internal/ubuntu xenial/main i386 libpng12-dev i386 1.2.54-1ubuntu1 [187 kB]
Get:207 http://ftpmaster.internal/ubuntu xenial/main i386 libfreetype6-dev i386 2.5.2-4ubuntu2 [633 kB]
Get:208 http://ftpmaster.internal/ubuntu xenial/main i386 pkg-config i386 0.29-2ubuntu2 [44.9 kB]
Get:209 http://ftpmaster.internal/ubuntu xenial/main i386 libfontconfig1-dev i386 2.11.1-0ubuntu6 [645 kB]
Get:210 http://ftpmaster.internal/ubuntu xenial/main i386 xorg-sgml-doctools all 1:1.11-1 [12.9 kB]
Get:211 http://ftpmaster.internal/ubuntu xenial/main i386 x11proto-core-dev all 7.0.28-0ubuntu2 [250 kB]
Get:212 http://ftpmaster.internal/ubuntu xenial/main i386 libxau-dev i386 1:1.0.8-1 [10.2 kB]
Get:213 http://ftpmaster.internal/ubuntu xenial/main i386 libxdmcp-dev i386 1:1.1.2-1.1 [25.0 kB]
Get:214 http://ftpmaster.internal/ubuntu xenial/main i386 x11proto-input-dev all 2.3.1-1 [118 kB]
Get:215 http://ftpmaster.internal/ubuntu xenial/main i386 x11proto-kb-dev all 1.0.7-0ubuntu1 [224 kB]
Get:216 http://ftpmaster.internal/ubuntu xenial/main i386 xtrans-dev all 1.3.5-1 [70.5 kB]
Get:217 http://ftpmaster.internal/ubuntu xenial/main i386 libpthread-stubs0-dev i386 0.3-4 [4054 B]
Get:218 http://ftpmaster.internal/ubuntu xenial/main i386 libxcb1-dev i386 1.11.1-1ubuntu1 [76.3 kB]
Get:219 http://ftpmaster.internal/ubuntu xenial/main i386 libx11-dev i386 2:1.6.3-1ubuntu2 [663 kB]
Get:220 http://ftpmaster.internal/ubuntu xenial/main i386 x11proto-render-dev all 2:0.11.1-2 [20.1 kB]
Get:221 http://ftpmaster.internal/ubuntu xenial/main i386 libxrender-dev i386 1:0.9.9-0ubuntu1 [24.9 kB]
Get:222 http://ftpmaster.internal/ubuntu xenial/main i386 x11proto-xext-dev all 7.3.0-1 [212 kB]
Get:223 http://ftpmaster.internal/ubuntu xenial/main i386 libxext-dev i386 2:1.3.3-1 [82.8 kB]
Get:224 http://ftpmaster.internal/ubuntu xenial/main i386 libice-dev i386 2:1.0.9-1 [42.4 kB]
Get:225 http://ftpmaster.internal/ubuntu xenial/main i386 libsm-dev i386 2:1.2.2-1 [15.1 kB]
Get:226 http://ftpmaster.internal/ubuntu xenial/main i386 libpixman-1-dev i386 0.33.4-1 [232 kB]
Get:227 http://ftpmaster.internal/ubuntu xenial/main i386 libxcb-render0-dev i386 1.11.1-1ubuntu1 [15.6 kB]
Get:228 http://ftpmaster.internal/ubuntu xenial/main i386 libxcb-shm0-dev i386 1.11.1-1ubuntu1 [6628 B]
Get:229 http://ftpmaster.internal/ubuntu xenial/main i386 libglib2.0-bin i386 2.47.3-3 [41.0 kB]
Get:230 http://ftpmaster.internal/ubuntu xenial/main i386 libpcre16-3 i386 2:8.35-7.1ubuntu1 [142 kB]
Get:231 http://ftpmaster.internal/ubuntu xenial/main i386 libpcre32-3 i386 2:8.35-7.1ubuntu1 [134 kB]
Get:232 http://ftpmaster.internal/ubuntu xenial/main i386 libpcre3-dev i386 2:8.35-7.1ubuntu1 [526 kB]
Get:233 http://ftpmaster.internal/ubuntu xenial/main i386 libglib2.0-dev i386 2.47.3-3 [1419 kB]
Get:234 http://ftpmaster.internal/ubuntu xenial/main i386 libcairo2-dev i386 1.14.6-1 [629 kB]
Get:235 http://ftpmaster.internal/ubuntu xenial/main i386 libcupsfilters1 i386 1.4.0-1 [82.3 kB]
Get:236 http://ftpmaster.internal/ubuntu xenial/main i386 libcupsimage2 i386 2.1.2-1 [16.8 kB]
Get:237 http://ftpmaster.internal/ubuntu xenial/main i386 libcurl3 i386 7.45.0-1ubuntu1 [206 kB]
Get:238 http://ftpmaster.internal/ubuntu xenial/main i386 libcurl4-openssl-dev i386 7.45.0-1ubuntu1 [290 kB]
Get:239 http://ftpmaster.internal/ubuntu xenial/main i386 libijs-0.35 i386 0.35-11 [16.1 kB]
Get:240 http://ftpmaster.internal/ubuntu xenial/main i386 libjbig2dec0 i386 0.12+20150918-1 [57.9 kB]
Get:241 http://ftpmaster.internal/ubuntu xenial/main i386 libpaper1 i386 1.1.24+nmu4ubuntu1 [13.8 kB]
Get:242 http://ftpmaster.internal/ubuntu xenial/main i386 libgs9-common all 9.16~dfsg~0-0ubuntu3 [2938 kB]
Get:243 http://ftpmaster.internal/ubuntu xenial/main i386 libgs9 i386 9.16~dfsg~0-0ubuntu3 [2157 kB]
Get:244 http://ftpmaster.internal/ubuntu xenial/main i386 libharfbuzz-icu0 i386 1.0.1-1build2 [5402 B]
Get:245 http://ftpmaster.internal/ubuntu xenial/main i386 libharfbuzz-gobject0 i386 1.0.1-1build2 [10.3 kB]
Get:246 http://ftpmaster.internal/ubuntu xenial/main i386 libharfbuzz-dev i386 1.0.1-1build2 [192 kB]
Get:247 http://ftpmaster.internal/ubuntu xenial/main i386 libintl-perl all 1.24-1build1 [735 kB]
Get:248 http://ftpmaster.internal/ubuntu xenial/main i386 libjpeg-turbo8-dev i386 1.4.2-0ubuntu1 [264 kB]
Get:249 http://ftpmaster.internal/ubuntu xenial/main i386 libjpeg8-dev i386 8c-2ubuntu8 [1546 B]
Get:250 http://ftpmaster.internal/ubuntu xenial/main i386 libjpeg-dev i386 8c-2ubuntu8 [1544 B]
Get:251 http://ftpmaster.internal/ubuntu xenial/main i386 libkpathsea6 i386 2015.20150524.37493-7build4 [58.1 kB]
Get:252 http://ftpmaster.internal/ubuntu xenial-proposed/main i386 liblapack3 i386 3.6.0-2 [1764 kB]
Get:253 http://ftpmaster.internal/ubuntu xenial-proposed/main i386 liblapack-dev i386 3.6.0-2 [1690 kB]
Get:254 http://ftpmaster.internal/ubuntu xenial/main i386 libtinfo-dev i386 6.0+20151024-2ubuntu1 [76.2 kB]
Get:255 http://ftpmaster.internal/ubuntu xenial/main i386 libncurses5-dev i386 6.0+20151024-2ubuntu1 [177 kB]
Get:256 http://ftpmaster.internal/ubuntu xenial/main i386 libxft-dev i386 2.3.2-1 [43.6 kB]
Get:257 http://ftpmaster.internal/ubuntu xenial/main i386 libpango1.0-dev i386 1.38.1-1 [283 kB]
Get:258 http://ftpmaster.internal/ubuntu xenial/main i386 libpaper-utils i386 1.1.24+nmu4ubuntu1 [8298 B]
Get:259 http://ftpmaster.internal/ubuntu xenial/main i386 libpoppler57 i386 0.38.0-0ubuntu1 [788 kB]
Get:260 http://ftpmaster.internal/ubuntu xenial/main i386 libpotrace0 i386 1.13-2 [16.8 kB]
Get:261 http://ftpmaster.internal/ubuntu xenial/main i386 libptexenc1 i386 2015.20150524.37493-7build4 [35.1 kB]
Get:262 http://ftpmaster.internal/ubuntu xenial/main i386 libreadline6-dev i386 6.3-8ubuntu1 [126 kB]
Get:263 http://ftpmaster.internal/ubuntu xenial/main i386 libreadline-dev i386 6.3-8ubuntu1 [1042 B]
Get:264 http://ftpmaster.internal/ubuntu xenial/main i386 libsynctex1 i386 2015.20150524.37493-7build4 [43.2 kB]
Get:265 http://ftpmaster.internal/ubuntu xenial/main i386 libtexlua52 i386 2015.20150524.37493-7build4 [99.2 kB]
Get:266 http://ftpmaster.internal/ubuntu xenial/main i386 libtexluajit2 i386 2015.20150524.37493-7build4 [225 kB]
Get:267 http://ftpmaster.internal/ubuntu xenial/main i386 libtext-unidecode-perl all 1.27-1 [103 kB]
Get:268 http://ftpmaster.internal/ubuntu xenial/main i386 libjbig-dev i386 2.1-3.1 [24.1 kB]
Get:269 http://ftpmaster.internal/ubuntu xenial/main i386 liblzma-dev i386 5.1.1alpha+20120614-2ubuntu2 [139 kB]
Get:270 http://ftpmaster.internal/ubuntu xenial/main i386 libtiffxx5 i386 4.0.6-1 [6208 B]
Get:271 http://ftpmaster.internal/ubuntu xenial/main i386 libtiff5-dev i386 4.0.6-1 [284 kB]
Get:272 http://ftpmaster.internal/ubuntu xenial/main i386 libxkbfile1 i386 1:1.0.9-0ubuntu1 [68.8 kB]
Get:273 http://ftpmaster.internal/ubuntu xenial/main i386 libxml-namespacesupport-perl all 1.11-1 [13.2 kB]
Get:274 http://ftpmaster.internal/ubuntu xenial/main i386 libxml-sax-base-perl all 1.07-1 [21.5 kB]
Get:275 http://ftpmaster.internal/ubuntu xenial/main i386 libxml-sax-perl all 0.99+dfsg-2ubuntu1 [64.6 kB]
Get:276 http://ftpmaster.internal/ubuntu xenial/main i386 libxml-libxml-perl i386 2.0123+dfsg-1build1 [332 kB]
Get:277 http://ftpmaster.internal/ubuntu xenial/main i386 x11proto-scrnsaver-dev all 1.2.2-1 [25.0 kB]
Get:278 http://ftpmaster.internal/ubuntu xenial/main i386 libxss-dev i386 1:1.2.2-1 [12.7 kB]
Get:279 http://ftpmaster.internal/ubuntu xenial/main i386 libxt-dev i386 1:1.1.5-0ubuntu1 [395 kB]
Get:280 http://ftpmaster.internal/ubuntu xenial/universe i386 mpack i386 1.6-8 [39.3 kB]
Get:281 http://ftpmaster.internal/ubuntu xenial/main i386 tex-common all 6.04 [545 kB]
Get:282 http://ftpmaster.internal/ubuntu xenial/main i386 preview-latex-style all 11.88-1.1ubuntu1 [184 kB]
Get:283 http://ftpmaster.internal/ubuntu xenial/main i386 t1utils i386 1.39-2 [54.6 kB]
Get:284 http://ftpmaster.internal/ubuntu xenial/main i386 tcl8.6 i386 8.6.4+dfsg-2ubuntu1 [14.4 kB]
Get:285 http://ftpmaster.internal/ubuntu xenial/main i386 tcl8.6-dev i386 8.6.4+dfsg-2ubuntu1 [958 kB]
Get:286 http://ftpmaster.internal/ubuntu xenial/main i386 texinfo i386 6.0.0.dfsg.1-4 [574 kB]
Get:287 http://ftpmaster.internal/ubuntu xenial/main i386 texlive-binaries i386 2015.20150524.37493-7build4 [9443 kB]
Get:288 http://ftpmaster.internal/ubuntu xenial/main i386 xdg-utils all 1.1.0~rc3+git20150907-1ubuntu3 [58.1 kB]
Get:289 http://ftpmaster.internal/ubuntu xenial/main i386 texlive-base all 2015.20151225-1 [18.2 MB]
Get:290 http://ftpmaster.internal/ubuntu xenial/main i386 texlive-latex-base all 2015.20151225-1 [882 kB]
Get:291 http://ftpmaster.internal/ubuntu xenial/main i386 texlive-extra-utils all 2015.20151225-2 [11.9 MB]
Get:292 http://ftpmaster.internal/ubuntu xenial/universe i386 ttf-adf-accanthis all 0.20090423-2 [401 kB]
Get:293 http://ftpmaster.internal/ubuntu xenial/universe i386 ttf-adf-gillius all 0.20090423-2 [400 kB]
Get:294 http://ftpmaster.internal/ubuntu xenial/universe i386 ttf-adf-universalis all 0.20090423-2 [221 kB]
Get:295 http://ftpmaster.internal/ubuntu xenial/universe i386 fonts-stix all 1.1.1-4 [591 kB]
Get:296 http://ftpmaster.internal/ubuntu xenial/universe i386 texlive-fonts-extra all 2015.20151225-2 [223 MB]
Get:297 http://ftpmaster.internal/ubuntu xenial/main i386 texlive-fonts-recommended all 2015.20151225-1 [5694 kB]
Get:298 http://ftpmaster.internal/ubuntu xenial/main i386 texlive-generic-recommended all 2015.20151225-1 [2779 kB]
Get:299 http://ftpmaster.internal/ubuntu xenial/main i386 texlive-latex-recommended all 2015.20151225-1 [13.0 MB]
Get:300 http://ftpmaster.internal/ubuntu xenial/main i386 texlive-pictures all 2015.20151225-1 [3116 kB]
Get:301 http://ftpmaster.internal/ubuntu xenial/main i386 texlive-latex-extra all 2015.20151225-2 [10.9 MB]
Get:302 http://ftpmaster.internal/ubuntu xenial/main i386 tk8.6 i386 8.6.4+dfsg-2ubuntu1 [12.3 kB]
Get:303 http://ftpmaster.internal/ubuntu xenial/main i386 tk8.6-dev i386 8.6.4+dfsg-2ubuntu1 [739 kB]
Get:304 http://ftpmaster.internal/ubuntu xenial/main i386 x11-xkb-utils i386 7.7+2 [157 kB]
Get:305 http://ftpmaster.internal/ubuntu xenial/main i386 xfonts-encodings all 1:1.0.4-2 [573 kB]
Get:306 http://ftpmaster.internal/ubuntu xenial/main i386 xfonts-utils i386 1:7.7+3 [75.2 kB]
Get:307 http://ftpmaster.internal/ubuntu xenial/main i386 xfonts-base all 1:1.0.4+nmu1 [5914 kB]
Get:308 http://ftpmaster.internal/ubuntu xenial/main i386 xserver-common all 2:1.17.3-2ubuntu2 [27.1 kB]
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Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up po-debconf (1.0.19) ...
Setting up libarchive-zip-perl (1.56-2) ...
Setting up libfile-stripnondeterminism-perl (0.014-1) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libasound2-data (1.1.0-0ubuntu1) ...
Setting up libasound2:i386 (1.1.0-0ubuntu1) ...
Setting up libtiff5:i386 (4.0.6-1) ...
Setting up libgdk-pixbuf2.0-common (2.32.2-1ubuntu1) ...
Setting up libgdk-pixbuf2.0-0:i386 (2.32.2-1ubuntu1) ...
Setting up libgif7:i386 (5.1.1-0.2) ...
Setting up libgtk2.0-common (2.24.29-1ubuntu1) ...
Setting up libatk1.0-data (2.18.0-1) ...
Setting up libatk1.0-0:i386 (2.18.0-1) ...
Setting up libpixman-1-0:i386 (0.33.4-1) ...
Setting up libxcb-render0:i386 (1.11.1-1ubuntu1) ...
Setting up libxcb-shm0:i386 (1.11.1-1ubuntu1) ...
Setting up libcairo2:i386 (1.14.6-1) ...
Setting up libthai-data (0.1.24-1) ...
Setting up libdatrie1:i386 (0.2.10-1) ...
Setting up libthai0:i386 (0.1.24-1) ...
Setting up libpango-1.0-0:i386 (1.38.1-1) ...
Setting up libharfbuzz0b:i386 (1.0.1-1build2) ...
Setting up libpangoft2-1.0-0:i386 (1.38.1-1) ...
Setting up libpangocairo-1.0-0:i386 (1.38.1-1) ...
Setting up libxi6:i386 (2:1.7.5-1) ...
Setting up libxrandr2:i386 (2:1.5.0-1) ...
Setting up libgtk2.0-0:i386 (2.24.29-1ubuntu1) ...
Setting up libglapi-mesa:i386 (11.0.8-1ubuntu1) ...
Setting up libx11-xcb1:i386 (2:1.6.3-1ubuntu2) ...
Setting up libxcb-dri2-0:i386 (1.11.1-1ubuntu1) ...
Setting up libxcb-dri3-0:i386 (1.11.1-1ubuntu1) ...
Setting up libxcb-glx0:i386 (1.11.1-1ubuntu1) ...
Setting up libxcb-present0:i386 (1.11.1-1ubuntu1) ...
Setting up libxcb-sync1:i386 (1.11.1-1ubuntu1) ...
Setting up libdrm-amdgpu1:i386 (2.4.65-3) ...
Setting up libpciaccess0:i386 (0.13.4-1) ...
Setting up libdrm-intel1:i386 (2.4.65-3) ...
Setting up libdrm-nouveau2:i386 (2.4.65-3) ...
Setting up libdrm-radeon1:i386 (2.4.65-3) ...
Setting up libllvm3.6v5:i386 (1:3.6.2-3ubuntu1) ...
Setting up libgl1-mesa-dri:i386 (11.0.8-1ubuntu1) ...
Setting up libgl1-mesa-glx:i386 (11.0.8-1ubuntu1) ...
update-alternatives: using /usr/lib/i386-linux-gnu/mesa/ld.so.conf to provide /etc/ld.so.conf.d/i386-linux-gnu_GL.conf (i386-linux-gnu_gl_conf) in auto mode
Setting up libatspi2.0-0:i386 (2.18.3-1ubuntu1) ...
Setting up libatk-bridge2.0-0:i386 (2.18.1-1ubuntu1) ...
Setting up libxt6:i386 (1:1.1.5-0ubuntu1) ...
Setting up libxmu6:i386 (2:1.1.2-2) ...
Setting up libxaw7:i386 (2:1.0.13-1) ...
Setting up libxcb-shape0:i386 (1.11.1-1ubuntu1) ...
Setting up x11-utils (7.7+3) ...
Setting up libatk-wrapper-java (0.33.3-5) ...
Setting up libatk-wrapper-java-jni:i386 (0.33.3-5) ...
Setting up fonts-cabin (1.5-2) ...
Setting up fonts-comfortaa (2.003-1) ...
Setting up fonts-crosextra-caladea (20130214-1) ...
Setting up fonts-crosextra-carlito (20130920-1) ...
Setting up fonts-dejavu-extra (2.35-1) ...
Setting up fonts-ebgaramond (0.015+git20130628-3) ...
Setting up fonts-ebgaramond-extra (0.015+git20130628-3) ...
Setting up fonts-font-awesome (4.4.0~dfsg-1) ...
Setting up fonts-freefont-otf (20120503-4) ...
Setting up fonts-gfs-artemisia (1.1-5) ...
Setting up fonts-gfs-complutum (1.1-6) ...
Setting up fonts-gfs-didot (1.1-6) ...
Setting up fonts-gfs-neohellenic (1.1-6) ...
Setting up fonts-gfs-olga (1.1-5) ...
Setting up fonts-gfs-solomos (1.1-5) ...
Setting up fonts-inconsolata (001.010-5) ...
Setting up fonts-junicode (0.7.8-2) ...
Setting up fonts-linuxlibertine (5.3.0-2) ...
Setting up fonts-lobster (2.0-2) ...
Setting up fonts-lobstertwo (2.0-2) ...
Setting up fonts-oflb-asana-math (000.907-6) ...
Setting up fonts-sil-gentium (20081126:1.03-1) ...
Setting up fonts-sil-gentium-basic (1.1-7) ...
Setting up fonts-sil-gentiumplus (5.000-1) ...
Setting up libgfortran3:i386 (5.3.1-5ubuntu2) ...
Setting up libgfortran-5-dev:i386 (5.3.1-5ubuntu2) ...
Setting up gfortran-5 (5.3.1-5ubuntu2) ...
Setting up gfortran (4:5.2.1-16ubuntu2) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up gir1.2-freedesktop:i386 (1.46.0-3ubuntu1) ...
Setting up libpangoxft-1.0-0:i386 (1.38.1-1) ...
Setting up gir1.2-pango-1.0:i386 (1.38.1-1) ...
Setting up libblas-common (3.6.0-2) ...
Setting up libblas3 (3.6.0-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Setting up libblas-dev (3.6.0-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
Setting up libbz2-dev:i386 (1.0.6-8) ...
Setting up libcairo-gobject2:i386 (1.14.6-1) ...
Setting up libcairo-script-interpreter2:i386 (1.14.6-1) ...
Setting up libexpat1-dev:i386 (2.1.0-7) ...
Setting up zlib1g-dev:i386 (1:1.2.8.dfsg-2ubuntu4) ...
Setting up libpng12-dev:i386 (1.2.54-1ubuntu1) ...
Setting up libfreetype6-dev:i386 (2.5.2-4ubuntu2) ...
Setting up pkg-config (0.29-2ubuntu2) ...
Setting up libfontconfig1-dev:i386 (2.11.1-0ubuntu6) ...
Setting up xorg-sgml-doctools (1:1.11-1) ...
Setting up x11proto-core-dev (7.0.28-0ubuntu2) ...
Setting up libxau-dev:i386 (1:1.0.8-1) ...
Setting up libxdmcp-dev:i386 (1:1.1.2-1.1) ...
Setting up x11proto-input-dev (2.3.1-1) ...
Setting up x11proto-kb-dev (1.0.7-0ubuntu1) ...
Setting up xtrans-dev (1.3.5-1) ...
Setting up libpthread-stubs0-dev:i386 (0.3-4) ...
Setting up libxcb1-dev:i386 (1.11.1-1ubuntu1) ...
Setting up libx11-dev:i386 (2:1.6.3-1ubuntu2) ...
Setting up x11proto-render-dev (2:0.11.1-2) ...
Setting up libxrender-dev:i386 (1:0.9.9-0ubuntu1) ...
Setting up x11proto-xext-dev (7.3.0-1) ...
Setting up libxext-dev:i386 (2:1.3.3-1) ...
Setting up libice-dev:i386 (2:1.0.9-1) ...
Setting up libsm-dev:i386 (2:1.2.2-1) ...
Setting up libpixman-1-dev (0.33.4-1) ...
Setting up libxcb-render0-dev:i386 (1.11.1-1ubuntu1) ...
Setting up libxcb-shm0-dev:i386 (1.11.1-1ubuntu1) ...
Setting up libglib2.0-bin (2.47.3-3) ...
Setting up libpcre16-3:i386 (2:8.35-7.1ubuntu1) ...
Setting up libpcre32-3:i386 (2:8.35-7.1ubuntu1) ...
Setting up libpcre3-dev:i386 (2:8.35-7.1ubuntu1) ...
Setting up libglib2.0-dev (2.47.3-3) ...
Setting up libcairo2-dev (1.14.6-1) ...
Setting up libcupsfilters1:i386 (1.4.0-1) ...
Setting up libcupsimage2:i386 (2.1.2-1) ...
Setting up libcurl3:i386 (7.45.0-1ubuntu1) ...
Setting up libcurl4-openssl-dev:i386 (7.45.0-1ubuntu1) ...
Setting up libijs-0.35:i386 (0.35-11) ...
Setting up libjbig2dec0 (0.12+20150918-1) ...
Setting up libpaper1:i386 (1.1.24+nmu4ubuntu1) ...

Creating config file /etc/papersize with new version
Setting up libgs9-common (9.16~dfsg~0-0ubuntu3) ...
update-alternatives: using /usr/share/ghostscript/9.16 to provide /usr/share/ghostscript/current (ghostscript-current) in auto mode
Setting up libgs9 (9.16~dfsg~0-0ubuntu3) ...
Setting up libharfbuzz-icu0:i386 (1.0.1-1build2) ...
Setting up libharfbuzz-gobject0:i386 (1.0.1-1build2) ...
Setting up libharfbuzz-dev (1.0.1-1build2) ...
Setting up libintl-perl (1.24-1build1) ...
Setting up libjpeg-turbo8-dev:i386 (1.4.2-0ubuntu1) ...
Setting up libjpeg8-dev:i386 (8c-2ubuntu8) ...
Setting up libjpeg-dev:i386 (8c-2ubuntu8) ...
Setting up libkpathsea6:i386 (2015.20150524.37493-7build4) ...
Setting up liblapack3 (3.6.0-2) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up liblapack-dev (3.6.0-2) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
Setting up libtinfo-dev:i386 (6.0+20151024-2ubuntu1) ...
Setting up libncurses5-dev:i386 (6.0+20151024-2ubuntu1) ...
Setting up libxft-dev (2.3.2-1) ...
Setting up libpango1.0-dev (1.38.1-1) ...
Setting up libpaper-utils (1.1.24+nmu4ubuntu1) ...
Setting up libpoppler57:i386 (0.38.0-0ubuntu1) ...
Setting up libpotrace0 (1.13-2) ...
Setting up libptexenc1:i386 (2015.20150524.37493-7build4) ...
Setting up libreadline6-dev:i386 (6.3-8ubuntu1) ...
Setting up libreadline-dev:i386 (6.3-8ubuntu1) ...
Setting up libsynctex1:i386 (2015.20150524.37493-7build4) ...
Setting up libtexlua52:i386 (2015.20150524.37493-7build4) ...
Setting up libtexluajit2:i386 (2015.20150524.37493-7build4) ...
Setting up libtext-unidecode-perl (1.27-1) ...
Setting up libjbig-dev:i386 (2.1-3.1) ...
Setting up liblzma-dev:i386 (5.1.1alpha+20120614-2ubuntu2) ...
Setting up libtiffxx5:i386 (4.0.6-1) ...
Setting up libtiff5-dev:i386 (4.0.6-1) ...
Setting up libxkbfile1:i386 (1:1.0.9-0ubuntu1) ...
Setting up libxml-namespacesupport-perl (1.11-1) ...
Setting up libxml-sax-base-perl (1.07-1) ...
Setting up libxml-sax-perl (0.99+dfsg-2ubuntu1) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...

Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up libxml-libxml-perl (2.0123+dfsg-1build1) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up x11proto-scrnsaver-dev (1.2.2-1) ...
Setting up libxss-dev:i386 (1:1.2.2-1) ...
Setting up libxt-dev:i386 (1:1.1.5-0ubuntu1) ...
Setting up mpack (1.6-8) ...
Setting up tex-common (6.04) ...
update-language: texlive-base not installed and configured, doing nothing!
Setting up preview-latex-style (11.88-1.1ubuntu1) ...
Setting up t1utils (1.39-2) ...
Setting up tcl8.6 (8.6.4+dfsg-2ubuntu1) ...
Setting up tcl8.6-dev:i386 (8.6.4+dfsg-2ubuntu1) ...
Setting up texinfo (6.0.0.dfsg.1-4) ...
Running mktexlsr. This may take some time. ... done.
Setting up texlive-binaries (2015.20150524.37493-7build4) ...
update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
Setting up xdg-utils (1.1.0~rc3+git20150907-1ubuntu3) ...
Setting up ttf-adf-accanthis (0.20090423-2) ...
Setting up ttf-adf-gillius (0.20090423-2) ...
Setting up ttf-adf-universalis (0.20090423-2) ...
Setting up fonts-stix (1.1.1-4) ...
Setting up tk8.6 (8.6.4+dfsg-2ubuntu1) ...
Setting up tk8.6-dev:i386 (8.6.4+dfsg-2ubuntu1) ...
Setting up x11-xkb-utils (7.7+2) ...
Setting up xfonts-encodings (1:1.0.4-2) ...
Setting up xfonts-utils (1:7.7+3) ...
Setting up xfonts-base (1:1.0.4+nmu1) ...
Setting up xserver-common (2:1.17.3-2ubuntu2) ...
Setting up xvfb (2:1.17.3-2ubuntu2) ...
Processing triggers for tex-common (6.04) ...
update-language: texlive-base not installed and configured, doing nothing!
texlive-base is not ready, skipping fmtutil-sys --all call
Setting up texlive-base (2015.20151225-1) ...
/usr/bin/tl-paper: setting paper size for dvips to a4.
/usr/bin/tl-paper: setting paper size for dvipdfmx to a4.
/usr/bin/tl-paper: setting paper size for xdvi to a4.
/usr/bin/tl-paper: setting paper size for pdftex to a4.
Processing triggers for tex-common (6.04) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
	This may take some time... done.
Setting up texlive-fonts-extra (2015.20151225-2) ...
Setting up texlive-fonts-recommended (2015.20151225-1) ...
Setting up texlive-generic-recommended (2015.20151225-1) ...
Setting up texlive-latex-base (2015.20151225-1) ...
Processing triggers for tex-common (6.04) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
	This may take some time... done.
Setting up texlive-latex-recommended (2015.20151225-1) ...
Setting up texlive-pictures (2015.20151225-1) ...
Setting up texlive-extra-utils (2015.20151225-2) ...
Processing triggers for tex-common (6.04) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Setting up texlive-latex-extra (2015.20151225-2) ...
Processing triggers for tex-common (6.04) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Setting up libnss3-nssdb (2:3.21-1ubuntu2) ...
Setting up debhelper (9.20151225ubuntu1) ...
Setting up libnss3:i386 (2:3.21-1ubuntu2) ...
Setting up openjdk-7-jre-headless:i386 (7u91-2.6.3-3) ...
update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/jre/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/jre/bin/java to provide /usr/bin/java (java) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/jre/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/jre/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/jre/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/jre/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/jre/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/jre/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/jre/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/jre/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode
Setting up ca-certificates-java (20140324) ...
Adding debian:SwissSign_Platinum_CA_-_G2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_2.pem
Adding debian:Cybertrust_Global_Root.pem
Adding debian:Certinomis_-_Autorité_Racine.pem
Adding debian:AddTrust_External_Root.pem
Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:ValiCert_Class_1_VA.pem
Adding debian:USERTrust_ECC_Certification_Authority.pem
Adding debian:Camerfirma_Global_Chambersign_Root.pem
Adding debian:EE_Certification_Centre_Root_CA.pem
Adding debian:StartCom_Certification_Authority.pem
Adding debian:Sonera_Class_2_Root_CA.pem
Adding debian:GeoTrust_Primary_Certification_Authority.pem
Adding debian:ComSign_Secured_CA.pem
Adding debian:Secure_Global_CA.pem
Adding debian:UTN_USERFirst_Hardware_Root_CA.pem
Adding debian:DigiCert_Global_Root_G2.pem
Adding debian:COMODO_ECC_Certification_Authority.pem
Adding debian:ACEDICOM_Root.pem
Adding debian:Entrust_Root_Certification_Authority.pem
Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
Adding debian:Izenpe.com.pem
Adding debian:StartCom_Certification_Authority_G2.pem
Adding debian:Chambers_of_Commerce_Root_-_2008.pem
Adding debian:Atos_TrustedRoot_2011.pem
Adding debian:Certum_Root_CA.pem
Adding debian:thawte_Primary_Root_CA.pem
Adding debian:XRamp_Global_CA_Root.pem
Adding debian:Deutsche_Telekom_Root_CA_2.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem
Adding debian:PSCProcert.pem
Adding debian:AddTrust_Qualified_Certificates_Root.pem
Adding debian:GlobalSign_Root_CA_-_R3.pem
Adding debian:TURKTRUST_Certificate_Services_Provider_Root_1.pem
Adding debian:A-Trust-nQual-03.pem
Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:Go_Daddy_Class_2_CA.pem
Adding debian:S-TRUST_Authentication_and_Encryption_Root_CA_2005_PN.pem
Adding debian:Swisscom_Root_CA_1.pem
Adding debian:Starfield_Class_2_CA.pem
Adding debian:Swisscom_Root_CA_2.pem
Adding debian:SG_TRUST_SERVICES_RACINE.pem
Adding debian:QuoVadis_Root_CA_1_G3.pem
Adding debian:RSA_Root_Certificate_1.pem
Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem
Adding debian:DigiCert_Global_Root_CA.pem
Adding debian:Entrust.net_Secure_Server_CA.pem
Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority.pem
Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem
Adding debian:Equifax_Secure_eBusiness_CA_1.pem
Adding debian:NetLock_Qualified_=Class_QA=_Root.pem
Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem
Adding debian:UTN_USERFirst_Email_Root_CA.pem
Adding debian:TC_TrustCenter_Class_2_CA_II.pem
Adding debian:NetLock_Notary_=Class_A=_Root.pem
Adding debian:Hongkong_Post_Root_CA_1.pem
Adding debian:DigiCert_Assured_ID_Root_CA.pem
Adding debian:DST_ACES_CA_X6.pem
Adding debian:DigiCert_Assured_ID_Root_G2.pem
Adding debian:Security_Communication_RootCA2.pem
Adding debian:SwissSign_Silver_CA_-_G2.pem
Adding debian:Entrust_Root_Certification_Authority_-_G2.pem
Adding debian:Thawte_Premium_Server_CA.pem
Adding debian:VeriSign_Universal_Root_Certification_Authority.pem
Adding debian:Certum_Trusted_Network_CA.pem
Adding debian:Trustis_FPS_Root_CA.pem
Adding debian:Sonera_Class_1_Root_CA.pem
Adding debian:AffirmTrust_Networking.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_2.pem
Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem
Adding debian:Digital_Signature_Trust_Co._Global_CA_3.pem
Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
Adding debian:GeoTrust_Global_CA.pem
Adding debian:IdenTrust_Commercial_Root_CA_1.pem
Adding debian:QuoVadis_Root_CA_3_G3.pem
Adding debian:Camerfirma_Chambers_of_Commerce_Root.pem
Adding debian:QuoVadis_Root_CA.pem
Adding debian:RSA_Security_2048_v3.pem
Adding debian:SecureTrust_CA.pem
Adding debian:EC-ACC.pem
Adding debian:Staat_der_Nederlanden_Root_CA.pem
Adding debian:UTN_DATACorp_SGC_Root_CA.pem
Adding debian:TWCA_Root_Certification_Authority.pem
Adding debian:Comodo_AAA_Services_root.pem
Adding debian:Thawte_Server_CA.pem
Adding debian:NetLock_Express_=Class_C=_Root.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem
Adding debian:QuoVadis_Root_CA_2.pem
Adding debian:thawte_Primary_Root_CA_-_G3.pem
Adding debian:certSIGN_ROOT_CA.pem
Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
Adding debian:ValiCert_Class_2_VA.pem
Adding debian:DST_Root_CA_X3.pem
Adding debian:Actalis_Authentication_Root_CA.pem
Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem
Adding debian:TWCA_Global_Root_CA.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority.pem
Adding debian:AC_Raíz_Certicámara_S.A..pem
Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
Adding debian:StartCom_Certification_Authority_2.pem
Adding debian:WoSign.pem
Adding debian:DigiCert_Global_Root_G3.pem
Adding debian:AffirmTrust_Premium.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem
Adding debian:Comodo_Trusted_Services_root.pem
Adding debian:GlobalSign_Root_CA_-_R2.pem
Adding debian:Certigna.pem
Adding debian:Buypass_Class_2_CA_1.pem
Adding debian:Juur-SK.pem
Adding debian:TeliaSonera_Root_CA_v1.pem
Adding debian:Certplus_Class_2_Primary_CA.pem
Adding debian:NetLock_Business_=Class_B=_Root.pem
Adding debian:GeoTrust_Global_CA_2.pem
Adding debian:E-Tugra_Certification_Authority.pem
Adding debian:Verisign_Class_4_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:TC_TrustCenter_Class_3_CA_II.pem
Adding debian:WoSign_China.pem
Adding debian:Equifax_Secure_Global_eBusiness_CA.pem
Adding debian:CA_Disig_Root_R1.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem
Adding debian:TÜBİTAK_UEKAE_Kök_Sertifika_Hizmet_Sağlayıcısı_-_Sürüm_3.pem
Adding debian:Buypass_Class_3_Root_CA.pem
Adding debian:Swisscom_Root_EV_CA_2.pem
Adding debian:CA_Disig_Root_R2.pem
Adding debian:Buypass_Class_2_Root_CA.pem
Adding debian:COMODO_Certification_Authority.pem
Adding debian:QuoVadis_Root_CA_3.pem
Adding debian:AddTrust_Low-Value_Services_Root.pem
Adding debian:DigiCert_Trusted_Root_G4.pem
Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2.pem
Adding debian:Root_CA_Generalitat_Valenciana.pem
Adding debian:GTE_CyberTrust_Global_Root.pem
Adding debian:Taiwan_GRCA.pem
Adding debian:CA_Disig.pem
Adding debian:Comodo_Secure_Services_root.pem
Adding debian:SwissSign_Gold_CA_-_G2.pem
Adding debian:QuoVadis_Root_CA_2_G3.pem
Adding debian:AffirmTrust_Commercial.pem
Adding debian:GeoTrust_Universal_CA.pem
Adding debian:GlobalSign_Root_CA.pem
Adding debian:COMODO_RSA_Certification_Authority.pem
Adding debian:Equifax_Secure_CA.pem
Adding debian:spi-cacert-2008.pem
Adding debian:ApplicationCA_-_Japanese_Government.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:China_Internet_Network_Information_Center_EV_Certificates_Root.pem
Adding debian:IGC_A.pem
Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem
Adding debian:Security_Communication_Root_CA.pem
Adding debian:Buypass_Class_3_CA_1.pem
Adding debian:thawte_Primary_Root_CA_-_G2.pem
Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Visa_eCommerce_Root.pem
Adding debian:GeoTrust_Universal_CA_2.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem
Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem
Adding debian:Baltimore_CyberTrust_Root.pem
Adding debian:ComSign_CA.pem
Adding debian:USERTrust_RSA_Certification_Authority.pem
Adding debian:Digital_Signature_Trust_Co._Global_CA_1.pem
Adding debian:Network_Solutions_Certificate_Authority.pem
Adding debian:CNNIC_ROOT.pem
Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2007.pem
Adding debian:Global_Chambersign_Root_-_2008.pem
Adding debian:ePKI_Root_Certification_Authority.pem
Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem
Adding debian:WellsSecure_Public_Root_Certificate_Authority.pem
Adding debian:ACCVRAIZ1.pem
Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem
Adding debian:AddTrust_Public_Services_Root.pem
Adding debian:Security_Communication_EV_RootCA1.pem
Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:SecureSign_RootCA11.pem
Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem
Adding debian:DigiCert_Assured_ID_Root_G3.pem
Adding debian:S-TRUST_Universal_Root_CA.pem
Adding debian:AffirmTrust_Premium_ECC.pem
Adding debian:EBG_Elektronik_Sertifika_Hizmet_Sağlayıcısı.pem
Adding debian:TC_TrustCenter_Universal_CA_I.pem
Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem
Adding debian:CFCA_EV_ROOT.pem
Adding debian:Microsec_e-Szigno_Root_CA.pem
done.
Setting up default-jre-headless (2:1.7-52.1) ...
Setting up dh-strip-nondeterminism (0.014-1) ...
Setting up openjdk-7-jre:i386 (7u91-2.6.3-3) ...
update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/jre/bin/policytool to provide /usr/bin/policytool (policytool) in auto mode
Setting up default-jre (2:1.7-52.1) ...
Setting up openjdk-7-jdk:i386 (7u91-2.6.3-3) ...
update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/wsimport to provide /usr/bin/wsimport (wsimport) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/jsadebugd to provide /usr/bin/jsadebugd (jsadebugd) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/native2ascii to provide /usr/bin/native2ascii (native2ascii) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/javac to provide /usr/bin/javac (javac) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/javah to provide /usr/bin/javah (javah) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/idlj to provide /usr/bin/idlj (idlj) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/javap to provide /usr/bin/javap (javap) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/jar to provide /usr/bin/jar (jar) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/extcheck to provide /usr/bin/extcheck (extcheck) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/schemagen to provide /usr/bin/schemagen (schemagen) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/jps to provide /usr/bin/jps (jps) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/xjc to provide /usr/bin/xjc (xjc) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/appletviewer to provide /usr/bin/appletviewer (appletviewer) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/jhat to provide /usr/bin/jhat (jhat) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/wsgen to provide /usr/bin/wsgen (wsgen) in auto mode
update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode
Setting up default-jdk (2:1.7-52.1) ...
Setting up sbuild-build-depends-r-base-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.21-0ubuntu5) ...
Processing triggers for systemd (228-3ubuntu1) ...
Processing triggers for ca-certificates (20150426ubuntu1) ...
Updating certificates in /etc/ssl/certs...
7 added, 7 removed; done.
Running hooks in /etc/ca-certificates/update.d...

Replacing debian:Entrust.net_Secure_Server_CA.pem
Replacing debian:GTE_CyberTrust_Global_Root.pem
Replacing debian:RSA_Root_Certificate_1.pem
Replacing debian:Thawte_Premium_Server_CA.pem
Replacing debian:Thawte_Server_CA.pem
Replacing debian:ValiCert_Class_1_VA.pem
Replacing debian:ValiCert_Class_2_VA.pem
Removing debian:Entrust.net_Secure_Server_CA.pem
Removing debian:GTE_CyberTrust_Global_Root.pem
Removing debian:RSA_Root_Certificate_1.pem
Removing debian:Thawte_Premium_Server_CA.pem
Removing debian:Thawte_Server_CA.pem
Removing debian:ValiCert_Class_1_VA.pem
Removing debian:ValiCert_Class_2_VA.pem
done.
done.

┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment                                                            │
└──────────────────────────────────────────────────────────────────────────────┘

Kernel: Linux 3.19.0-43-generic amd64 (i686)
Toolchain package versions: binutils_2.25.90.20160101-1ubuntu2 dpkg-dev_1.18.3ubuntu1 g++-5_5.3.1-5ubuntu2 gcc-5_5.3.1-5ubuntu2 libc6-dev_2.21-0ubuntu5 libstdc++-5-dev_5.3.1-5ubuntu2 libstdc++6_5.3.1-5ubuntu2 linux-libc-dev_4.3.0-5.16
Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.20-1 apt_1.1.10 apt-transport-https_1.1.10 base-files_9.4ubuntu3 base-passwd_3.5.39 bash_4.3-14ubuntu1 bash-completion_1:2.1-4.2ubuntu1 binutils_2.25.90.20160101-1ubuntu2 bison_2:3.0.4.dfsg-1 bsdmainutils_9.0.6ubuntu1 bsdutils_1:2.27.1-1ubuntu3 build-essential_12.1ubuntu2 bzip2_1.0.6-8 ca-certificates_20150426ubuntu1 ca-certificates-java_20140324 coreutils_8.23-4ubuntu2 cpp_4:5.2.1-16ubuntu2 cpp-5_5.3.1-5ubuntu2 dash_0.5.7-4ubuntu2 debconf_1.5.58ubuntu1 debhelper_9.20151225ubuntu1 debianutils_4.5.1 default-jdk_2:1.7-52.1 default-jre_2:1.7-52.1 default-jre-headless_2:1.7-52.1 dh-strip-nondeterminism_0.014-1 diffutils_1:3.3-3 dmsetup_2:1.02.110-1ubuntu2 dpkg_1.18.3ubuntu1 dpkg-dev_1.18.3ubuntu1 e2fslibs_1.42.13-1ubuntu1 e2fsprogs_1.42.13-1ubuntu1 fakeroot_1.20.2-1ubuntu1 file_1:5.25-2ubuntu1 findutils_4.4.2-10 fontconfig_2.11.1-0ubuntu6 fontconfig-config_2.11.1-0ubuntu6 fonts-cabin_1.5-2 fonts-comfortaa_2.003-1 fonts-crosextra-caladea_20130214-1 fonts-crosextra-carlito_20130920-1 fonts-dejavu-core_2.35-1 fonts-dejavu-extra_2.35-1 fonts-ebgaramond_0.015+git20130628-3 fonts-ebgaramond-extra_0.015+git20130628-3 fonts-font-awesome_4.4.0~dfsg-1 fonts-freefont-otf_20120503-4 fonts-freefont-ttf_20120503-4 fonts-gfs-artemisia_1.1-5 fonts-gfs-complutum_1.1-6 fonts-gfs-didot_1.1-6 fonts-gfs-neohellenic_1.1-6 fonts-gfs-olga_1.1-5 fonts-gfs-solomos_1.1-5 fonts-inconsolata_001.010-5 fonts-junicode_0.7.8-2 fonts-lato_2.0-1 fonts-linuxlibertine_5.3.0-2 fonts-lobster_2.0-2 fonts-lobstertwo_2.0-2 fonts-oflb-asana-math_000.907-6 fonts-roboto_1:4.4.4r2-6ubuntu1 fonts-sil-gentium_20081126:1.03-1 fonts-sil-gentium-basic_1.1-7 fonts-sil-gentiumplus_5.000-1 fonts-stix_1.1.1-4 g++_4:5.2.1-16ubuntu2 g++-5_5.3.1-5ubuntu2 gcc_4:5.2.1-16ubuntu2 gcc-5_5.3.1-5ubuntu2 gcc-5-base_5.3.1-5ubuntu2 gettext_0.19.6-1ubuntu1 gettext-base_0.19.6-1ubuntu1 gfortran_4:5.2.1-16ubuntu2 gfortran-5_5.3.1-5ubuntu2 gir1.2-freedesktop_1.46.0-3ubuntu1 gir1.2-glib-2.0_1.46.0-3ubuntu1 gir1.2-pango-1.0_1.38.1-1 gnupg_1.4.19-6ubuntu1 gpgv_1.4.19-6ubuntu1 grep_2.22-1 groff-base_1.22.3-5 gzip_1.6-4ubuntu1 hostname_3.16ubuntu2 init_1.24ubuntu2 initscripts_2.88dsf-59.2ubuntu3 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 java-common_0.52.1 libacl1_2.2.52-2 libapparmor1_2.10-0ubuntu10 libapt-pkg4.16_1.0.10.2ubuntu1 libapt-pkg5.0_1.1.10 libarchive-zip-perl_1.56-2 libasan2_5.3.1-5ubuntu2 libasn1-8-heimdal_1.6~rc2+dfsg-10ubuntu1 libasound2_1.1.0-0ubuntu1 libasound2-data_1.1.0-0ubuntu1 libasprintf0v5_0.19.6-1ubuntu1 libasyncns0_0.8-5build1 libatk-bridge2.0-0_2.18.1-1ubuntu1 libatk-wrapper-java_0.33.3-5 libatk-wrapper-java-jni_0.33.3-5 libatk1.0-0_2.18.0-1 libatk1.0-data_2.18.0-1 libatomic1_5.3.1-5ubuntu2 libatspi2.0-0_2.18.3-1ubuntu1 libattr1_1:2.4.47-2 libaudit-common_1:2.4.4-4ubuntu1 libaudit1_1:2.4.4-4ubuntu1 libavahi-client3_0.6.32~rc+dfsg-1ubuntu2 libavahi-common-data_0.6.32~rc+dfsg-1ubuntu2 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libkmod2_21-1ubuntu1 libkpathsea6_2015.20150524.37493-7build4 libkrb5-26-heimdal_1.6~rc2+dfsg-10ubuntu1 libkrb5-3_1.13.2+dfsg-4 libkrb5support0_1.13.2+dfsg-4 liblapack-dev_3.6.0-2 liblapack3_3.6.0-2 liblcms2-2_2.6-3ubuntu2 libldap-2.4-2_2.4.41+dfsg-1ubuntu3 libllvm3.6v5_1:3.6.2-3ubuntu1 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblzma-dev_5.1.1alpha+20120614-2ubuntu2 liblzma5_5.1.1alpha+20120614-2ubuntu2 liblzo2-2_2.08-1.2 libmagic1_1:5.25-2ubuntu1 libmount1_2.27.1-1ubuntu3 libmpc3_1.0.3-1 libmpfr4_3.1.3-2 libmpx0_5.3.1-5ubuntu2 libncurses5_6.0+20151024-2ubuntu1 libncurses5-dev_6.0+20151024-2ubuntu1 libncursesw5_6.0+20151024-2ubuntu1 libnettle6_3.1.1-4 libnih-dbus1_1.0.3-4.3ubuntu1 libnih1_1.0.3-4.3ubuntu1 libnspr4_2:4.11-1ubuntu1 libnss3_2:3.21-1ubuntu2 libnss3-nssdb_2:3.21-1ubuntu2 libogg0_1.3.2-1 libp11-kit0_0.23.2-3 libpam-modules_1.1.8-3.1ubuntu3 libpam-modules-bin_1.1.8-3.1ubuntu3 libpam-runtime_1.1.8-3.1ubuntu3 libpam0g_1.1.8-3.1ubuntu3 libpango-1.0-0_1.38.1-1 libpango1.0-dev_1.38.1-1 libpangocairo-1.0-0_1.38.1-1 libpangoft2-1.0-0_1.38.1-1 libpangoxft-1.0-0_1.38.1-1 libpaper-utils_1.1.24+nmu4ubuntu1 libpaper1_1.1.24+nmu4ubuntu1 libpciaccess0_0.13.4-1 libpcre16-3_2:8.35-7.1ubuntu1 libpcre3_2:8.35-7.1ubuntu1 libpcre3-dev_2:8.35-7.1ubuntu1 libpcre32-3_2:8.35-7.1ubuntu1 libpcrecpp0v5_2:8.35-7.1ubuntu1 libpcsclite1_1.8.14-1ubuntu1 libperl5.22_5.22.1-3 libpipeline1_1.4.1-2 libpixman-1-0_0.33.4-1 libpixman-1-dev_0.33.4-1 libpng12-0_1.2.54-1ubuntu1 libpng12-dev_1.2.54-1ubuntu1 libpoppler57_0.38.0-0ubuntu1 libpotrace0_1.13-2 libprocps3_1:3.3.9-1ubuntu8 libprocps4_2:3.3.10-4ubuntu1 libptexenc1_2015.20150524.37493-7build4 libpthread-stubs0-dev_0.3-4 libpulse0_1:7.1-1ubuntu3 libpython-stdlib_2.7.11-1 libpython2.7-minimal_2.7.11-2 libpython2.7-stdlib_2.7.11-2 libquadmath0_5.3.1-5ubuntu2 libreadline-dev_6.3-8ubuntu1 libreadline6_6.3-8ubuntu1 libreadline6-dev_6.3-8ubuntu1 libroken18-heimdal_1.6~rc2+dfsg-10ubuntu1 librtmp1_2.4+20150115.gita107cef-1build1 libsasl2-2_2.1.26.dfsg1-14 libsasl2-modules-db_2.1.26.dfsg1-14 libsctp1_1.0.16+dfsg-3 libseccomp2_2.2.3-2ubuntu3 libselinux1_2.4-3 libsemanage-common_2.4-3 libsemanage1_2.4-3 libsepol1_2.4-2 libsigsegv2_2.10-4 libslang2_2.3.0-2ubuntu1 libsm-dev_2:1.2.2-1 libsm6_2:1.2.2-1 libsmartcols1_2.27.1-1ubuntu3 libsndfile1_1.0.25-10 libsqlite3-0_3.10.0-1 libss2_1.42.13-1ubuntu1 libssl1.0.0_1.0.2e-1ubuntu1 libstdc++-5-dev_5.3.1-5ubuntu2 libstdc++6_5.3.1-5ubuntu2 libsynctex1_2015.20150524.37493-7build4 libsystemd0_228-3ubuntu1 libtasn1-6_4.7-3 libtcl8.6_8.6.4+dfsg-2ubuntu1 libtexlua52_2015.20150524.37493-7build4 libtexluajit2_2015.20150524.37493-7build4 libtext-unidecode-perl_1.27-1 libthai-data_0.1.24-1 libthai0_0.1.24-1 libtiff5_4.0.6-1 libtiff5-dev_4.0.6-1 libtiffxx5_4.0.6-1 libtimedate-perl_2.3000-2 libtinfo-dev_6.0+20151024-2ubuntu1 libtinfo5_6.0+20151024-2ubuntu1 libtk8.6_8.6.4+dfsg-2ubuntu1 libubsan0_5.3.1-5ubuntu2 libudev1_228-3ubuntu1 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-28 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-1ubuntu3 libvorbis0a_1.3.4-3 libvorbisenc2_1.3.4-3 libwind0-heimdal_1.6~rc2+dfsg-10ubuntu1 libwrap0_7.6.q-25 libx11-6_2:1.6.3-1ubuntu2 libx11-data_2:1.6.3-1ubuntu2 libx11-dev_2:1.6.3-1ubuntu2 libx11-xcb1_2:1.6.3-1ubuntu2 libxau-dev_1:1.0.8-1 libxau6_1:1.0.8-1 libxaw7_2:1.0.13-1 libxcb-dri2-0_1.11.1-1ubuntu1 libxcb-dri3-0_1.11.1-1ubuntu1 libxcb-glx0_1.11.1-1ubuntu1 libxcb-present0_1.11.1-1ubuntu1 libxcb-render0_1.11.1-1ubuntu1 libxcb-render0-dev_1.11.1-1ubuntu1 libxcb-shape0_1.11.1-1ubuntu1 libxcb-shm0_1.11.1-1ubuntu1 libxcb-shm0-dev_1.11.1-1ubuntu1 libxcb-sync1_1.11.1-1ubuntu1 libxcb1_1.11.1-1ubuntu1 libxcb1-dev_1.11.1-1ubuntu1 libxcomposite1_1:0.4.4-1 libxcursor1_1:1.1.14-1 libxdamage1_1:1.1.4-2 libxdmcp-dev_1:1.1.2-1.1 libxdmcp6_1:1.1.2-1.1 libxext-dev_2:1.3.3-1 libxext6_2:1.3.3-1 libxfixes3_1:5.0.1-2 libxfont1_1:1.5.1-1 libxft-dev_2.3.2-1 libxft2_2.3.2-1 libxi6_2:1.7.5-1 libxinerama1_2:1.1.3-1 libxkbfile1_1:1.0.9-0ubuntu1 libxml-libxml-perl_2.0123+dfsg-1build1 libxml-namespacesupport-perl_1.11-1 libxml-sax-base-perl_1.07-1 libxml-sax-perl_0.99+dfsg-2ubuntu1 libxml2_2.9.2+zdfsg1-4ubuntu2 libxmu6_2:1.1.2-2 libxmuu1_2:1.1.2-2 libxpm4_1:3.5.11-1 libxrandr2_2:1.5.0-1 libxrender-dev_1:0.9.9-0ubuntu1 libxrender1_1:0.9.9-0ubuntu1 libxshmfence1_1.2-1 libxss-dev_1:1.2.2-1 libxss1_1:1.2.2-1 libxt-dev_1:1.1.5-0ubuntu1 libxt6_1:1.1.5-0ubuntu1 libxtst6_2:1.2.2-1 libxv1_2:1.0.10-1 libxxf86dga1_2:1.1.4-1 libxxf86vm1_1:1.1.4-1 libzzip-0-13_0.13.62-3 linux-libc-dev_4.3.0-5.16 lockfile-progs_0.1.17 login_1:4.1.5.1-1.1ubuntu7 lsb-base_9.20160110 m4_1.4.17-5 make_4.0-8.2 man-db_2.7.5-1 mawk_1.3.3-17ubuntu2 mime-support_3.59ubuntu1 mount_2.27.1-1ubuntu3 mpack_1.6-8 multiarch-support_2.21-0ubuntu5 ncurses-base_6.0+20151024-2ubuntu1 ncurses-bin_6.0+20151024-2ubuntu1 openjdk-7-jdk_7u91-2.6.3-3 openjdk-7-jre_7u91-2.6.3-3 openjdk-7-jre-headless_7u91-2.6.3-3 openssl_1.0.2e-1ubuntu1 optipng_0.7.5-1 passwd_1:4.1.5.1-1.1ubuntu7 patch_2.7.5-1 perl_5.22.1-3 perl-base_5.22.1-3 perl-modules-5.22_5.22.1-3 pkg-config_0.29-2ubuntu2 pkg-create-dbgsym_0.70 pkgbinarymangler_128 po-debconf_1.0.19 policyrcd-script-zg2_0.1-2 poppler-data_0.4.7-7 preview-latex-style_11.88-1.1ubuntu1 procps_2:3.3.10-4ubuntu1 python_2.7.11-1 python-minimal_2.7.11-1 python2.7_2.7.11-2 python2.7-minimal_2.7.11-2 readline-common_6.3-8ubuntu1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-base-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 shared-mime-info_1.5-2 systemd_228-3ubuntu1 systemd-sysv_228-3ubuntu1 sysv-rc_2.88dsf-59.2ubuntu3 sysvinit-utils_2.88dsf-59.2ubuntu3 t1utils_1.39-2 tar_1.28-2.1 tcl8.6_8.6.4+dfsg-2ubuntu1 tcl8.6-dev_8.6.4+dfsg-2ubuntu1 tex-common_6.04 texinfo_6.0.0.dfsg.1-4 texlive-base_2015.20151225-1 texlive-binaries_2015.20150524.37493-7build4 texlive-extra-utils_2015.20151225-2 texlive-fonts-extra_2015.20151225-2 texlive-fonts-recommended_2015.20151225-1 texlive-generic-recommended_2015.20151225-1 texlive-latex-base_2015.20151225-1 texlive-latex-extra_2015.20151225-2 texlive-latex-recommended_2015.20151225-1 texlive-pictures_2015.20151225-1 tk8.6_8.6.4+dfsg-2ubuntu1 tk8.6-dev_8.6.4+dfsg-2ubuntu1 ttf-adf-accanthis_0.20090423-2 ttf-adf-gillius_0.20090423-2 ttf-adf-universalis_0.20090423-2 tzdata_2015g-1 tzdata-java_2015g-1 ubuntu-keyring_2012.05.19 ucf_3.0031 udev_228-3ubuntu1 util-linux_2.27.1-1ubuntu3 x11-common_1:7.7+12ubuntu1 x11-utils_7.7+3 x11-xkb-utils_7.7+2 x11proto-core-dev_7.0.28-0ubuntu2 x11proto-input-dev_2.3.1-1 x11proto-kb-dev_1.0.7-0ubuntu1 x11proto-render-dev_2:0.11.1-2 x11proto-scrnsaver-dev_1.2.2-1 x11proto-xext-dev_7.3.0-1 xauth_1:1.0.9-1ubuntu2 xdg-utils_1.1.0~rc3+git20150907-1ubuntu3 xfonts-base_1:1.0.4+nmu1 xfonts-encodings_1:1.0.4-2 xfonts-utils_1:7.7+3 xkb-data_2.12-1ubuntu1 xorg-sgml-doctools_1:1.11-1 xserver-common_2:1.17.3-2ubuntu2 xtrans-dev_1.3.5-1 xvfb_2:1.17.3-2ubuntu2 xz-utils_5.1.1alpha+20120614-2ubuntu2 zlib1g_1:1.2.8.dfsg-2ubuntu4 zlib1g-dev_1:1.2.8.dfsg-2ubuntu4

┌──────────────────────────────────────────────────────────────────────────────┐
│ Build                                                                        │
└──────────────────────────────────────────────────────────────────────────────┘


Unpack source
─────────────

gpgv: Signature made Mon Jan 11 03:38:04 2016 UTC using RSA key ID AB99A21A
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./r-base_3.2.3-2.dsc
dpkg-source: info: extracting r-base in r-base-3.2.3
dpkg-source: info: unpacking r-base_3.2.3.orig.tar.gz
dpkg-source: info: applying r-base_3.2.3-2.diff.gz
dpkg-source: info: upstream files that have been modified: 
 r-base-3.2.3/src/modules/X11/devX11.c
 r-base-3.2.3/src/modules/X11/rlogo_icon.h

Check disc space
────────────────

Sufficient free space for build

User Environment
────────────────

DEB_BUILD_OPTIONS=parallel=4
HOME=/home/buildd
LANG=C
LOGNAME=buildd
MAIL=/var/mail/buildd
OLDPWD=/
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
PWD=/«PKGBUILDDIR»
SHELL=/bin/sh
SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/«PKGBUILDDIR»' && 'env'
SUDO_GID=2501
SUDO_UID=2001
SUDO_USER=buildd
TERM=unknown
USER=buildd
USERNAME=root

dpkg-buildpackage
─────────────────

dpkg-buildpackage: source package r-base
dpkg-buildpackage: source version 3.2.3-2
dpkg-buildpackage: source distribution unstable
 dpkg-source --before-build r-base-3.2.3
dpkg-buildpackage: host architecture i386
 fakeroot debian/rules clean
*** clean ***
dh_testdir
dh_testroot
rm -f	configure-stamp \
	build-stamp build-indep-stamp build-arch-stamp \
	make-stamp make-arch-stamp make-indep-stamp \
	install-indep-stamp install-arch-stamp \
	check-stamp 
[ ! -f Makefile ] || /usr/bin/make distclean
rm -f `find . -name "*~"`
rm -rf debian/tmp debian/files* core debian/substvars
rm -f doc/html/function.html doc/html/packages.html
rm -f modules/*.so src/unix/Rscript
dh_clean
 debian/rules build-arch
*** configure ***
#automake
#autoconf
dh_testdir
R_PAPERSIZE=letter				\
R_BROWSER=xdg-open				\
PAGER=/usr/bin/pager				\
PERL=/usr/bin/perl				\
JAVA_HOME=/usr/lib/jvm/default-java             \
R_UNZIPCMD=/usr/bin/unzip			\
R_ZIPCMD=/usr/bin/zip				\
R_PRINTCMD=/usr/bin/lpr				\
LIBnn=lib					\
AWK=/usr/bin/awk                                \
CC="gcc -std=gnu99"					\
CXX=g++						\
F77=gfortran					\
FC=gfortran					\
CFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g"				\
CXXFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g"				\
FFLAGS="-g -O2 -fstack-protector-strong"				\
FCFLAGS="-g -O2 -fstack-protector-strong"				\
CPPFLAGS=					\
LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro"				\
FLIBS=						\
rsharedir=/usr/share/R/share			\
rincludedir=/usr/share/R/include		\
rdocdir=/usr/share/R/doc			\
./configure --prefix=/usr			\
	    --with-cairo			\
	    --with-jpeglib			\
	    --with-readline			\
	    --with-tcltk			\
	    --with-system-bzlib			\
	    --with-system-pcre			\
	    --with-system-zlib			\
	    --mandir=/usr/share/man		\
	    --infodir=/usr/share/info		\
	    --datadir=/usr/share/R/share	\
	    --includedir=/usr/share/R/include	\
	    --with-blas		\
	    --with-lapack		\
	    --enable-R-profiling		\
	    --enable-R-shlib			\
	    --enable-memory-profiling		\
	    --without-recommended-packages	\
	    --build i686-linux-gnu
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
loading site script './config.site'
loading build-specific script './config.site'
checking for pwd... /bin/pwd
checking whether builddir is srcdir... yes
checking for working aclocal... missing
checking for working autoconf... missing
checking for working automake... missing
checking for working autoheader... missing
checking for gawk... /usr/bin/awk
checking whether ln -s works... yes
checking for bison... bison -y
checking for ar... ar
checking for a BSD-compatible install... /usr/bin/install -c
checking for sed... /bin/sed
checking for which... /usr/bin/which
checking for /usr/bin/pager... /usr/bin/pager
checking for gtar... no
checking for gnutar... no
checking for tar... /bin/tar
checking for tex... /usr/bin/tex
checking for pdftex... /usr/bin/pdftex
checking for pdflatex... /usr/bin/pdflatex
checking for makeindex... /usr/bin/makeindex
checking for texi2any... /usr/bin/texi2any
checking whether texi2any version is at least 5.1... yes
checking for ginstall-info... no
checking for install-info... no
checking for texi2dvi... /usr/bin/texi2dvi
checking for kpsewhich... /usr/bin/kpsewhich
checking for latex inconsolata package... found zi4.sty
checking for unzip... /usr/bin/unzip
checking for zip... /usr/bin/zip
checking for gzip... /bin/gzip
checking for bzip2... /bin/bzip2
using default browser ... xdg-open
checking for acroread... no
checking for acroread4... no
checking for xdg-open... /usr/bin/xdg-open
checking for notangle... false
checking for realpath... /usr/bin/realpath
checking for pkg-config... /usr/bin/pkg-config
checking for gcc... gcc -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -std=gnu99 -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking whether gcc -std=gnu99 needs -traditional... no
checking how to run the C preprocessor... gcc -std=gnu99 -E
defining F77 to be gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking how to run the C++ preprocessor... g++ -E
checking whether __attribute__((visibility())) is supported... yes
checking whether gcc -std=gnu99 accepts -fvisibility... yes
checking whether gfortran accepts -fvisibility... yes
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking minix/config.h usability... no
checking minix/config.h presence... no
checking for minix/config.h... no
checking whether it is safe to define __EXTENSIONS__... yes
checking for gcc... gcc
checking whether we are using the GNU Objective C compiler... no
checking whether gcc accepts -g... no
checking for Objective C++ compiler... trying some possibilities
checking whether g++ can compile ObjC++... no
checking whether  can compile ObjC++... no
no working ObjC++ compiler found
checking for a sed that does not truncate output... (cached) /bin/sed
checking for fgrep... /bin/grep -F
checking for ld used by gcc -std=gnu99... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc -std=gnu99 object... ok
checking for dlfcn.h... yes
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether g++ accepts -g... (cached) yes
checking how to run the C++ preprocessor... g++ -E
checking whether we are using the GNU Fortran 77 compiler... (cached) yes
checking whether gfortran accepts -g... (cached) yes
checking for objdir... .libs
checking if gcc -std=gnu99 supports -fno-rtti -fno-exceptions... no
checking for gcc -std=gnu99 option to produce PIC... -fPIC -DPIC
checking if gcc -std=gnu99 PIC flag -fPIC -DPIC works... yes
checking if gcc -std=gnu99 static flag -static works... yes
checking if gcc -std=gnu99 supports -c -o file.o... yes
checking if gcc -std=gnu99 supports -c -o file.o... (cached) yes
checking whether the gcc -std=gnu99 linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for cos in -lm... yes
checking for sin in -lm... yes
checking for dlopen in -ldl... yes
checking readline/history.h usability... yes
checking readline/history.h presence... yes
checking for readline/history.h... yes
checking readline/readline.h usability... yes
checking readline/readline.h presence... yes
checking for readline/readline.h... yes
checking for rl_callback_read_char in -lreadline... yes
checking for history_truncate_file... yes
checking whether rl_completion_matches exists and is declared... yes
checking for ANSI C header files... (cached) yes
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for sys/wait.h that is POSIX.1 compatible... yes
checking arpa/inet.h usability... yes
checking arpa/inet.h presence... yes
checking for arpa/inet.h... yes
checking dl.h usability... no
checking dl.h presence... no
checking for dl.h... no
checking for dlfcn.h... (cached) yes
checking elf.h usability... yes
checking elf.h presence... yes
checking for elf.h... yes
checking features.h usability... yes
checking features.h presence... yes
checking for features.h... yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking floatingpoint.h usability... no
checking floatingpoint.h presence... no
checking for floatingpoint.h... no
checking fpu_control.h usability... yes
checking fpu_control.h presence... yes
checking for fpu_control.h... yes
checking glob.h usability... yes
checking glob.h presence... yes
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checking grp.h usability... yes
checking grp.h presence... yes
checking for grp.h... yes
checking langinfo.h usability... yes
checking langinfo.h presence... yes
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checking netdb.h usability... yes
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checking netinet/in.h usability... yes
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checking pwd.h usability... yes
checking pwd.h presence... yes
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checking sched.h usability... yes
checking sched.h presence... yes
checking for sched.h... yes
checking for strings.h... (cached) yes
checking sys/param.h usability... yes
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checking sys/select.h usability... yes
checking sys/select.h presence... yes
checking for sys/select.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking for sys/stat.h... (cached) yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking sys/times.h usability... yes
checking sys/times.h presence... yes
checking for sys/times.h... yes
checking sys/utsname.h usability... yes
checking sys/utsname.h presence... yes
checking for sys/utsname.h... yes
checking for unistd.h... (cached) yes
checking utime.h usability... yes
checking utime.h presence... yes
checking for utime.h... yes
checking stdalign.h usability... yes
checking stdalign.h presence... yes
checking for stdalign.h... yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking for inttypes.h... (cached) yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking locale.h usability... yes
checking locale.h presence... yes
checking for locale.h... yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking stdbool.h usability... yes
checking stdbool.h presence... yes
checking for stdbool.h... yes
checking for stdint.h... (cached) yes
checking for string.h... (cached) yes
checking whether setjmp.h is POSIX.1 compatible... yes
checking whether sigsetjmp is declared... yes
checking whether siglongjmp is declared... yes
checking for GNU C library with version >= 2... yes
checking return type of signal handlers... void
checking for uint64_t... yes
checking for int64_t... yes
checking for int_fast64_t... yes
checking for pid_t... yes
checking for size_t... yes
checking whether SIZE_MAX is declared... yes
checking for blkcnt_t... yes
checking for type of socket length... socklen_t *
checking for stack_t... yes
checking for intptr_t... yes
checking for uintptr_t... yes
checking whether byte ordering is bigendian... no
checking for an ANSI C-conforming const... yes
checking for gcc -std=gnu99 option to accept ISO C99... none needed
checking for gcc -std=gnu99 option to accept ISO Standard C... (cached) none needed
checking for inline... inline
checking size of int... 4
checking size of long... 4
checking size of long long... 8
checking size of double... 8
checking size of size_t... 4
checking size of long double... 12
checking whether we can compute C Make dependencies... yes, using $(CC) -MM
checking whether gcc -std=gnu99 supports -c -o FILE.lo... yes
checking for gcc -std=gnu99 option to support OpenMP... -fopenmp
checking how to get verbose linking output from gfortran... -v
checking for Fortran 77 libraries of gfortran...  -L/usr/lib/gcc/i686-linux-gnu/5 -L/usr/lib/gcc/i686-linux-gnu/5/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/5/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/5/../../.. -lgfortran -lm -lquadmath
checking how to get verbose linking output from gcc -std=gnu99... -v
checking for C libraries of gcc -std=gnu99...  -L/usr/lib/gcc/i686-linux-gnu/5 -L/usr/lib/gcc/i686-linux-gnu/5/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/5/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/5/../../.. -lgcc_s
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore
checking whether gfortran appends underscores to external names... yes
checking whether gfortran appends extra underscores to external names... no
checking whether mixed C/Fortran code can be run... yes
checking whether gfortran and gcc -std=gnu99 agree on int and double... yes
checking whether gfortran and gcc -std=gnu99 agree on double complex... yes
checking for gfortran option to support OpenMP... -fopenmp
checking whether g++ accepts -M for generating dependencies... yes
checking for g++ option to support OpenMP... -fopenmp
checking whether we can compute ObjC Make dependencies... no
checking whether C runtime needs -D__NO_MATH_INLINES... no
checking for xmkmf... no
checking whether g++  supports C++11 features by default... no
checking whether g++  supports C++11 features with -std=c++11... yes
checking for off_t... yes
checking for working alloca.h... yes
checking for alloca... yes
checking whether alloca is declared... yes
checking whether expm1 exists and is declared... yes
checking whether hypot exists and is declared... yes
checking whether log1p exists and is declared... yes
checking whether log1pl exists and is declared... yes
checking whether log2 exists and is declared... yes
checking whether log10 exists and is declared... yes
checking whether nearbyint exists and is declared... yes
checking whether nearbyintl exists and is declared... yes
checking whether powl exists and is declared... yes
checking whether rint exists and is declared... yes
checking whether rintl exists and is declared... yes
checking whether va_copy exists and is declared... yes
checking for isblank... yes
checking sunmath.h usability... no
checking sunmath.h presence... no
checking for sunmath.h... no
checking for cospi in -lsunmath... no
checking for atanpi... no
checking for atan2pi... no
checking for cospi... no
checking for exp10... yes
checking for pown... no
checking for sinpi... no
checking for tanpi... no
checking for fseeko... yes
checking for ftello... yes
checking for matherr... yes
checking whether fcntl exists and is declared... yes
checking whether getgrgid exists and is declared... yes
checking whether getpwuid exists and is declared... yes
checking whether kill exists and is declared... yes
checking whether sigaction exists and is declared... yes
checking whether sigaltstack exists and is declared... yes
checking whether sigemptyset exists and is declared... yes
checking whether fdopen exists and is declared... yes
checking whether popen exists and is declared... yes
checking whether setenv exists and is declared... yes
checking whether unsetenv exists and is declared... yes
checking whether getrlimit exists and is declared... yes
checking whether getrusage exists and is declared... yes
checking whether getpriority exists and is declared... yes
checking whether chmod exists and is declared... yes
checking whether mkfifo exists and is declared... yes
checking whether stat exists and is declared... yes
checking whether umask exists and is declared... yes
checking whether gettimeofday exists and is declared... yes
checking whether utimes exists and is declared... yes
checking whether times exists and is declared... yes
checking whether gmtime_r exists and is declared... yes
checking whether localtime_r exists and is declared... yes
checking whether nl_langinfo exists and is declared... yes
checking whether access exists and is declared... yes
checking whether chdir exists and is declared... yes
checking whether execv exists and is declared... yes
checking whether ftruncate exists and is declared... yes
checking whether getcwd exists and is declared... yes
checking whether geteuid exists and is declared... yes
checking whether getuid exists and is declared... yes
checking whether link exists and is declared... yes
checking whether readlink exists and is declared... yes
checking whether symlink exists and is declared... yes
checking whether sysconf exists and is declared... yes
checking whether sched_setaffinity exists and is declared... yes
checking whether sched_getaffinity exists and is declared... yes
checking whether utime exists and is declared... yes
checking for clock_gettime in -lrt... yes
checking whether clock_gettime exists and is declared... yes
checking whether timespec_get exists and is declared... yes
checking for putenv... yes
checking whether putenv is declared... yes
checking for vasprintf... yes
checking whether vasprintf is declared... yes
checking for mempcpy... yes
checking for realpath... yes
checking whether realpath is declared... yes
checking whether glob exists and is declared... yes
checking for isnan... yes
checking whether isfinite is declared... yes
checking whether isnan is declared... yes
checking whether you have IEEE 754 floating-point arithmetic... yes
checking whether putenv("FOO") can unset an environment variable... yes
checking whether putenv("FOO=") can unset an environment variable... no
checking for nl_langinfo and CODESET... yes
checking for mkdtemp... yes
checking for strdup... yes
checking for strncasecmp... yes
checking whether mkdtemp is declared... yes
checking whether strdup is declared... yes
checking whether strncasecmp is declared... yes
checking for library containing connect... none required
checking for library containing gethostbyname... none required
checking for library containing xdr_string... none required
checking for __setfpucw... no
checking for working calloc... yes
checking for working isfinite... yes
checking for working log1p... yes
checking whether ftell works correctly on files opened for append... yes
checking for working sigaction... yes
checking whether mktime sets errno... no
checking whether mktime works correctly outside 1902-2037... no
checking complex.h usability... yes
checking complex.h presence... yes
checking for complex.h... yes
checking for double complex... yes
checking whether C99 double complex is supported... yes
checking whether cabs exists and is declared... yes
checking whether carg exists and is declared... yes
checking whether cexp exists and is declared... yes
checking whether clog exists and is declared... yes
checking whether csqrt exists and is declared... yes
checking whether cpow exists and is declared... yes
checking whether ccos exists and is declared... yes
checking whether csin exists and is declared... yes
checking whether ctan exists and is declared... yes
checking whether cacos exists and is declared... yes
checking whether casin exists and is declared... yes
checking whether catan exists and is declared... yes
checking whether ccosh exists and is declared... yes
checking whether csinh exists and is declared... yes
checking whether ctanh exists and is declared... yes
checking whether 'struct tm' includes tm_zone... yes
checking whether 'struct tm' includes tm_gmtoff... yes
checking for dgemm_... no
checking for ATL_xerbla in -latlas... no
checking for dgemm_ in -lblas... yes
checking for dgemm_ in -ldgemm... no
checking for dgemm_ in -lblas... (cached) yes
checking for dgemm_ in -lessl... no
checking for dgemm_ in -lblas... (cached) yes
checking whether double complex BLAS can be used... yes
checking whether the BLAS is complete... yes
checking for dpstrf_... no
checking for dpstrf_ in -llapack... yes
checking iconv.h usability... yes
checking iconv.h presence... yes
checking for iconv.h... yes
checking for iconv... yes
checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes
checking for iconvlist... no
checking for iconv... yes
checking for iconv declaration... 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking wchar.h usability... yes
checking wchar.h presence... yes
checking for wchar.h... yes
checking wctype.h usability... yes
checking wctype.h presence... yes
checking for wctype.h... yes
checking whether mbrtowc exists and is declared... yes
checking whether wcrtomb exists and is declared... yes
checking whether wcscoll exists and is declared... yes
checking whether wcsftime exists and is declared... yes
checking whether wcstod exists and is declared... yes
checking whether mbstowcs exists and is declared... yes
checking whether wcstombs exists and is declared... yes
checking whether wctrans exists and is declared... yes
checking whether iswblank exists and is declared... yes
checking whether wctype exists and is declared... yes
checking whether iswctype exists and is declared... yes
checking for wctrans_t... yes
checking for mbstate_t... yes
checking for ICU... no
checking for X... libraries , headers 
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
checking X11/Intrinsic.h usability... yes
checking X11/Intrinsic.h presence... yes
checking for X11/Intrinsic.h... yes
checking for XtToolkitInitialize in -lXt... yes
using X11 ... yes
checking for KeySym... yes
checking X11/Xmu/Atoms.h usability... no
checking X11/Xmu/Atoms.h presence... no
checking for X11/Xmu/Atoms.h... no
checking whether pkg-config knows about cairo and pango... yes
checking whether cairo including pango is >= 1.2 and works... yes
checking for tclConfig.sh... no
checking for tclConfig.sh in library (sub)directories... /usr/lib/tcl8.6/tclConfig.sh
checking for tkConfig.sh... no
checking for tkConfig.sh in library (sub)directories... /usr/lib/tk8.6/tkConfig.sh
checking tcl.h usability... yes
checking tcl.h presence... yes
checking for tcl.h... yes
checking tk.h usability... yes
checking tk.h presence... yes
checking for tk.h... yes
checking whether compiling/linking Tcl/Tk code works... yes
checking for BSD networking... yes
checking if jpeglib version >= 6b... yes
checking for jpeg_destroy_compress in -ljpeg... yes
checking for main in -lz... yes
checking if libpng version >= 1.2.7... yes
checking for png_create_write_struct in -lpng... yes
checking tiffio.h usability... yes
checking tiffio.h presence... yes
checking for tiffio.h... yes
checking for TIFFOpen in -ltiff... yes
checking rpc/types.h usability... yes
checking rpc/types.h presence... yes
checking for rpc/types.h... yes
checking for rpc/xdr.h... yes
checking for XDR support... yes
checking for inflateInit2_ in -lz... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking if zlib version >= 1.2.5... yes
checking whether zlib support needs to be compiled... no
checking for BZ2_bzlibVersion in -lbz2... yes
checking bzlib.h usability... yes
checking bzlib.h presence... yes
checking for bzlib.h... yes
checking if bzip2 version >= 1.0.6... yes
checking whether bzip2 support needs to be compiled... no
checking for lzma_version_number in -llzma... yes
checking lzma.h usability... yes
checking lzma.h presence... yes
checking for lzma.h... yes
checking if lzma version >= 5.0.3... yes
checking for pcre_fullinfo in -lpcre... yes
checking pcre.h usability... yes
checking pcre.h presence... yes
checking for pcre.h... yes
checking pcre/pcre.h usability... no
checking pcre/pcre.h presence... no
checking for pcre/pcre.h... no
checking if PCRE version >= 8.10, < 10.0 and has UTF-8 support... yes
checking whether PCRE support needs to be compiled... no
checking for curl-config... /usr/bin/curl-config
libcurl 7.45.0
checking if libcurl version >= 7.28.0... yes
checking curl/curl.h usability... yes
checking curl/curl.h presence... yes
checking for curl/curl.h... yes
checking whether leap seconds are treated according to POSIX... yes
checking for inline... inline
checking for sys/time.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... (cached) yes
checking for struct stat.st_atim.tv_nsec... yes
checking whether struct stat.st_atim is of type struct timespec... yes
checking for setitimer... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... 64
checking for _LARGEFILE_SOURCE value needed for large files... no
checking whether KERN_USRSTACK sysctl is supported... no
checking for visible __lib_stack_end... yes
checking for paperconf... /usr/bin/paperconf
checking whether we are using the GNU Fortran compiler... yes
checking whether gfortran accepts -g... yes
checking whether we are using the GNU Fortran compiler... (cached) yes
checking whether gfortran accepts -g... (cached) yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for Fortran flag to compile .f90 files... none
checking for Fortran flag to compile .f95 files... none
checking for gfortran option to support OpenMP... -fopenmp
checking whether NLS is requested... yes

Configuring src/extra/intl directory
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking whether we are using the GNU C Library 2 or newer... yes
checking for ranlib... (cached) ranlib
checking for simple visibility declarations... yes
checking for stdint.h... yes
checking for getpagesize... yes
checking for working mmap... yes
checking whether integer division by zero raises SIGFPE... yes
checking for inttypes.h... yes
checking for unsigned long long int... yes
checking for inttypes.h... (cached) yes
checking whether the inttypes.h PRIxNN macros are broken... no
checking for ld used by gcc -std=gnu99... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for shared library run path origin... done
checking whether imported symbols can be declared weak... yes
checking for multithread API to use... none
checking argz.h usability... yes
checking argz.h presence... yes
checking for argz.h... yes
checking for inttypes.h... (cached) yes
checking for limits.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... (cached) yes
checking for getcwd... yes
checking for getegid... yes
checking for geteuid... yes
checking for getgid... yes
checking for getuid... yes
checking for mempcpy... (cached) yes
checking for munmap... yes
checking for stpcpy... yes
checking for strcasecmp... yes
checking for strdup... (cached) yes
checking for strtoul... yes
checking for tsearch... yes
checking for argz_count... yes
checking for argz_stringify... yes
checking for argz_next... yes
checking for __fsetlocking... yes
checking whether feof_unlocked is declared... yes
checking whether fgets_unlocked is declared... yes
checking for iconv... (cached) yes
checking for iconv declaration... (cached) 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking for NL_LOCALE_NAME macro... yes
checking for bison... bison
checking version of bison... 3.0.4, ok
checking for long long int... yes
checking for long double... yes
checking for wchar_t... yes
checking for wint_t... yes
checking for intmax_t... yes
checking whether printf() supports POSIX/XSI format strings... yes
checking whether we are using the GNU C Library 2.1 or newer... yes
checking for stdint.h... (cached) yes
checking for SIZE_MAX... yes
checking for stdint.h... (cached) yes
checking for CFPreferencesCopyAppValue... no
checking for CFLocaleCopyCurrent... no
checking for ptrdiff_t... yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for asprintf... yes
checking for fwprintf... yes
checking for putenv... (cached) yes
checking for setenv... yes
checking for setlocale... yes
checking for snprintf... yes
checking for wcslen... yes
checking whether _snprintf is declared... no
checking whether _snwprintf is declared... no
checking whether getc_unlocked is declared... yes
checking for nl_langinfo and CODESET... (cached) yes
checking for LC_MESSAGES... yes
checking for CFPreferencesCopyAppValue... (cached) no
checking for CFLocaleCopyCurrent... (cached) no
checking whether included gettext is requested... no
checking for GNU gettext in libc... yes
checking whether to use NLS... yes
checking where the gettext function comes from... libc
Finished configuring src/extra/intl directory

using as R_SHELL for scripts ... /bin/bash
configure: creating ./config.status
config.status: creating Makeconf
config.status: creating Makefile
config.status: creating doc/Makefile
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config.status: creating src/extra/blas/Makefile
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config.status: creating src/extra/intl/Makefile
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config.status: creating src/library/tools/DESCRIPTION
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config.status: executing libtool commands
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R is now configured for i686-pc-linux-gnu

  Source directory:          .
  Installation directory:    /usr

  C compiler:                gcc -std=gnu99  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g
  Fortran 77 compiler:       gfortran  -g -O2 -fstack-protector-strong

  C++ compiler:              g++  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g
  C++ 11 compiler:           g++  -std=c++11 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g
  Fortran 90/95 compiler:    gfortran -g -O2 -fstack-protector-strong
  Obj-C compiler:	      

  Interfaces supported:      X11, tcltk
  External libraries:        readline, BLAS(generic), LAPACK(generic), zlib, bzlib, lzma, PCRE, curl
  Additional capabilities:   PNG, JPEG, TIFF, NLS, cairo
  Options enabled:           shared R library, R profiling, memory profiling

  Capabilities skipped:      ICU
  Options not enabled:       shared BLAS

  Recommended packages:      no

touch configure-stamp
*** make-arch ***
/usr/bin/make		CFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g"			\
		CXXFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g"			\
		FFLAGS="-g -O2 -fstack-protector-strong"			\
		FCFLAGS="-g -O2 -fstack-protector-strong"			\
		CC="gcc -std=gnu99"				\
		CXX=g++			\
		F77=gfortran			\
		LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro"			\
		PKG_BUILT_STAMP=""""	\
		R
make[1]: Entering directory '/«PKGBUILDDIR»'
make[2]: Entering directory '/«PKGBUILDDIR»/m4'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/«PKGBUILDDIR»/m4'
make[2]: Entering directory '/«PKGBUILDDIR»/tools'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/«PKGBUILDDIR»/tools'
make[2]: Entering directory '/«PKGBUILDDIR»/doc'
make[3]: Entering directory '/«PKGBUILDDIR»/doc/html'
make[3]: Leaving directory '/«PKGBUILDDIR»/doc/html'
make[3]: Entering directory '/«PKGBUILDDIR»/doc/manual'
make[3]: Nothing to be done for 'R'.
make[3]: Leaving directory '/«PKGBUILDDIR»/doc/manual'
make[2]: Leaving directory '/«PKGBUILDDIR»/doc'
make[2]: Entering directory '/«PKGBUILDDIR»/etc'
make[2]: Leaving directory '/«PKGBUILDDIR»/etc'
make[2]: Entering directory '/«PKGBUILDDIR»/share'
make[2]: Leaving directory '/«PKGBUILDDIR»/share'
make[2]: Entering directory '/«PKGBUILDDIR»/src'
make[3]: Entering directory '/«PKGBUILDDIR»/src/scripts'
creating src/scripts/R.fe
make[4]: Entering directory '/«PKGBUILDDIR»/src/scripts'
mkdir -p -- ../../bin
make[4]: Leaving directory '/«PKGBUILDDIR»/src/scripts'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/scripts'
make[3]: Entering directory '/«PKGBUILDDIR»/src/include'
mkdir -p -- ../../include
make[4]: Entering directory '/«PKGBUILDDIR»/src/include/R_ext'
mkdir -p -- ../../../include/R_ext
make[4]: Leaving directory '/«PKGBUILDDIR»/src/include/R_ext'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/include'
make[3]: Entering directory '/«PKGBUILDDIR»/src/extra'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/tre'
make[5]: Entering directory '/«PKGBUILDDIR»/src/extra/tre'
making regcomp.d from regcomp.c
making regerror.d from regerror.c
making regexec.d from regexec.c
making tre-ast.d from tre-ast.c
making tre-compile.d from tre-compile.c
making tre-match-approx.d from tre-match-approx.c
making tre-match-backtrack.d from tre-match-backtrack.c
making tre-match-parallel.d from tre-match-parallel.c
making tre-mem.d from tre-mem.c
making tre-parse.d from tre-parse.c
making tre-stack.d from tre-stack.c
making xmalloc.d from xmalloc.c
make[5]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre'
make[5]: Entering directory '/«PKGBUILDDIR»/src/extra/tre'
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c regcomp.c -o regcomp.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c regerror.c -o regerror.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c regexec.c -o regexec.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-ast.c -o tre-ast.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-compile.c -o tre-compile.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-match-approx.c -o tre-match-approx.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-match-backtrack.c -o tre-match-backtrack.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-match-parallel.c -o tre-match-parallel.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-mem.c -o tre-mem.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-parse.c -o tre-parse.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-stack.c -o tre-stack.o
gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c xmalloc.c -o xmalloc.o
rm -f libtre.a
ar cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o xmalloc.o
ranlib libtre.a
make[5]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/extra'
make[3]: Entering directory '/«PKGBUILDDIR»/src/appl'
making integrate.d from integrate.c
making interv.d from interv.c
making maxcol.d from maxcol.c
making optim.d from optim.c
making pretty.d from pretty.c
making uncmin.d from uncmin.c
make[4]: Entering directory '/«PKGBUILDDIR»/src/appl'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c integrate.c -o integrate.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c interv.c -o interv.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c maxcol.c -o maxcol.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c optim.c -o optim.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pretty.c -o pretty.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c uncmin.c -o uncmin.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dchdc.f -o dchdc.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dpbfa.f -o dpbfa.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dpbsl.f -o dpbsl.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dpoco.f -o dpoco.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dpodi.f -o dpodi.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dpofa.f -o dpofa.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dposl.f -o dposl.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dqrdc.f -o dqrdc.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dqrdc2.f -o dqrdc2.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dqrls.f -o dqrls.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dqrsl.f -o dqrsl.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dqrutl.f -o dqrutl.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dsvdc.f -o dsvdc.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dtrco.f -o dtrco.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c dtrsl.f -o dtrsl.o
rm -f libappl.a
ar cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o 
ranlib libappl.a
make[4]: Leaving directory '/«PKGBUILDDIR»/src/appl'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/appl'
make[3]: Entering directory '/«PKGBUILDDIR»/src/nmath'
making mlutils.d from mlutils.c
making d1mach.d from d1mach.c
making i1mach.d from i1mach.c
making fmax2.d from fmax2.c
making fmin2.d from fmin2.c
making fprec.d from fprec.c
making fround.d from fround.c
making ftrunc.d from ftrunc.c
making sign.d from sign.c
making fsign.d from fsign.c
making imax2.d from imax2.c
making imin2.d from imin2.c
making chebyshev.d from chebyshev.c
making log1p.d from log1p.c
making expm1.d from expm1.c
making lgammacor.d from lgammacor.c
making gammalims.d from gammalims.c
making stirlerr.d from stirlerr.c
making bd0.d from bd0.c
making gamma.d from gamma.c
making lgamma.d from lgamma.c
making gamma_cody.d from gamma_cody.c
making beta.d from beta.c
making lbeta.d from lbeta.c
making polygamma.d from polygamma.c
making cospi.d from cospi.c
making bessel_i.d from bessel_i.c
making bessel_j.d from bessel_j.c
making bessel_k.d from bessel_k.c
making bessel_y.d from bessel_y.c
making choose.d from choose.c
making snorm.d from snorm.c
making sexp.d from sexp.c
making dgamma.d from dgamma.c
making pgamma.d from pgamma.c
making qgamma.d from qgamma.c
making rgamma.d from rgamma.c
making dbeta.d from dbeta.c
making pbeta.d from pbeta.c
making qbeta.d from qbeta.c
making rbeta.d from rbeta.c
making dunif.d from dunif.c
making punif.d from punif.c
making qunif.d from qunif.c
making runif.d from runif.c
making dnorm.d from dnorm.c
making pnorm.d from pnorm.c
making qnorm.d from qnorm.c
making rnorm.d from rnorm.c
making dlnorm.d from dlnorm.c
making plnorm.d from plnorm.c
making qlnorm.d from qlnorm.c
making rlnorm.d from rlnorm.c
making df.d from df.c
making pf.d from pf.c
making qf.d from qf.c
making rf.d from rf.c
making dnf.d from dnf.c
making dt.d from dt.c
making pt.d from pt.c
making qt.d from qt.c
making rt.d from rt.c
making dnt.d from dnt.c
making dchisq.d from dchisq.c
making pchisq.d from pchisq.c
making qchisq.d from qchisq.c
making rchisq.d from rchisq.c
making rnchisq.d from rnchisq.c
making dbinom.d from dbinom.c
making pbinom.d from pbinom.c
making qbinom.d from qbinom.c
making rbinom.d from rbinom.c
making rmultinom.d from rmultinom.c
making dcauchy.d from dcauchy.c
making pcauchy.d from pcauchy.c
making qcauchy.d from qcauchy.c
making rcauchy.d from rcauchy.c
making dexp.d from dexp.c
making pexp.d from pexp.c
making qexp.d from qexp.c
making rexp.d from rexp.c
making dgeom.d from dgeom.c
making pgeom.d from pgeom.c
making qgeom.d from qgeom.c
making rgeom.d from rgeom.c
making dhyper.d from dhyper.c
making phyper.d from phyper.c
making qhyper.d from qhyper.c
making rhyper.d from rhyper.c
making dnbinom.d from dnbinom.c
making pnbinom.d from pnbinom.c
making qnbinom.d from qnbinom.c
making rnbinom.d from rnbinom.c
making dpois.d from dpois.c
making ppois.d from ppois.c
making qpois.d from qpois.c
making rpois.d from rpois.c
making dweibull.d from dweibull.c
making pweibull.d from pweibull.c
making qweibull.d from qweibull.c
making rweibull.d from rweibull.c
making dlogis.d from dlogis.c
making plogis.d from plogis.c
making qlogis.d from qlogis.c
making rlogis.d from rlogis.c
making dnchisq.d from dnchisq.c
making pnchisq.d from pnchisq.c
making qnchisq.d from qnchisq.c
making dnbeta.d from dnbeta.c
making pnbeta.d from pnbeta.c
making qnbeta.d from qnbeta.c
making pnf.d from pnf.c
making pnt.d from pnt.c
making qnf.d from qnf.c
making qnt.d from qnt.c
making ptukey.d from ptukey.c
making qtukey.d from qtukey.c
making toms708.d from toms708.c
making wilcox.d from wilcox.c
making signrank.d from signrank.c
make[4]: Entering directory '/«PKGBUILDDIR»/src/nmath'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c mlutils.c -o mlutils.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c d1mach.c -o d1mach.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c i1mach.c -o i1mach.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fmax2.c -o fmax2.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fmin2.c -o fmin2.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fprec.c -o fprec.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fround.c -o fround.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ftrunc.c -o ftrunc.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sign.c -o sign.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fsign.c -o fsign.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c imax2.c -o imax2.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c imin2.c -o imin2.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c chebyshev.c -o chebyshev.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c log1p.c -o log1p.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c expm1.c -o expm1.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c lgammacor.c -o lgammacor.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gammalims.c -o gammalims.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stirlerr.c -o stirlerr.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bd0.c -o bd0.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gamma.c -o gamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c lgamma.c -o lgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gamma_cody.c -o gamma_cody.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c beta.c -o beta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c lbeta.c -o lbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c polygamma.c -o polygamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cospi.c -o cospi.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bessel_i.c -o bessel_i.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bessel_j.c -o bessel_j.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bessel_k.c -o bessel_k.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bessel_y.c -o bessel_y.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c choose.c -o choose.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c snorm.c -o snorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sexp.c -o sexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dgamma.c -o dgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pgamma.c -o pgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qgamma.c -o qgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rgamma.c -o rgamma.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dbeta.c -o dbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pbeta.c -o pbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qbeta.c -o qbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rbeta.c -o rbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dunif.c -o dunif.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c punif.c -o punif.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qunif.c -o qunif.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c runif.c -o runif.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dnorm.c -o dnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pnorm.c -o pnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qnorm.c -o qnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rnorm.c -o rnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dlnorm.c -o dlnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plnorm.c -o plnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qlnorm.c -o qlnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rlnorm.c -o rlnorm.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c df.c -o df.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pf.c -o pf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qf.c -o qf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rf.c -o rf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dnf.c -o dnf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dt.c -o dt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pt.c -o pt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qt.c -o qt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rt.c -o rt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dnt.c -o dnt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dchisq.c -o dchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pchisq.c -o pchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qchisq.c -o qchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rchisq.c -o rchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rnchisq.c -o rnchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dbinom.c -o dbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pbinom.c -o pbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qbinom.c -o qbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rbinom.c -o rbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rmultinom.c -o rmultinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dcauchy.c -o dcauchy.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pcauchy.c -o pcauchy.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qcauchy.c -o qcauchy.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rcauchy.c -o rcauchy.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dexp.c -o dexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pexp.c -o pexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qexp.c -o qexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rexp.c -o rexp.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dgeom.c -o dgeom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pgeom.c -o pgeom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qgeom.c -o qgeom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rgeom.c -o rgeom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dhyper.c -o dhyper.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c phyper.c -o phyper.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qhyper.c -o qhyper.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rhyper.c -o rhyper.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dnbinom.c -o dnbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pnbinom.c -o pnbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qnbinom.c -o qnbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rnbinom.c -o rnbinom.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dpois.c -o dpois.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ppois.c -o ppois.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qpois.c -o qpois.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rpois.c -o rpois.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dweibull.c -o dweibull.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pweibull.c -o pweibull.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qweibull.c -o qweibull.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rweibull.c -o rweibull.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dlogis.c -o dlogis.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plogis.c -o plogis.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qlogis.c -o qlogis.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rlogis.c -o rlogis.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dnchisq.c -o dnchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pnchisq.c -o pnchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qnchisq.c -o qnchisq.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dnbeta.c -o dnbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pnbeta.c -o pnbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qnbeta.c -o qnbeta.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pnf.c -o pnf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pnt.c -o pnt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qnf.c -o qnf.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qnt.c -o qnt.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ptukey.c -o ptukey.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qtukey.c -o qtukey.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c toms708.c -o toms708.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c wilcox.c -o wilcox.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c signrank.c -o signrank.o
rm -rf libnmath.a
ar cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o
ranlib libnmath.a
make[4]: Leaving directory '/«PKGBUILDDIR»/src/nmath'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/nmath'
make[3]: Entering directory '/«PKGBUILDDIR»/src/unix'
config.status: creating src/unix/Makefile
making Rembedded.d from Rembedded.c
making dynload.d from dynload.c
making system.d from system.c
making sys-unix.d from sys-unix.c
making sys-std.d from sys-std.c
making X11.d from X11.c
make[4]: Entering directory '/«PKGBUILDDIR»/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Rembedded.c -o Rembedded.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dynload.c -o dynload.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c system.c -o system.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sys-unix.c -o sys-unix.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sys-std.c -o sys-std.o
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c X11.c -o X11.o
rm -rf libunix.a
ar cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o
ranlib libunix.a
make[4]: Leaving directory '/«PKGBUILDDIR»/src/unix'
make[4]: Entering directory '/«PKGBUILDDIR»/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H    -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -Wl,-Bsymbolic-functions -Wl,-z,relro -DR_HOME='"/«PKGBUILDDIR»"' \
  -o Rscript ./Rscript.c
make[4]: Leaving directory '/«PKGBUILDDIR»/src/unix'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/unix'
make[3]: Entering directory '/«PKGBUILDDIR»/src/main'
config.status: creating src/main/Makefile
making CommandLineArgs.d from CommandLineArgs.c
making Rdynload.d from Rdynload.c
making Renviron.d from Renviron.c
making RNG.d from RNG.c
making agrep.d from agrep.c
making apply.d from apply.c
making arithmetic.d from arithmetic.c
making array.d from array.c
making attrib.d from attrib.c
making bind.d from bind.c
making builtin.d from builtin.c
making character.d from character.c
making coerce.d from coerce.c
making colors.d from colors.c
making complex.d from complex.c
making connections.d from connections.c
making context.d from context.c
making cum.d from cum.c
making dcf.d from dcf.c
making datetime.d from datetime.c
making debug.d from debug.c
making deparse.d from deparse.c
making devices.d from devices.c
making dotcode.d from dotcode.c
making dounzip.d from dounzip.c
making dstruct.d from dstruct.c
making duplicate.d from duplicate.c
making edit.d from edit.c
making engine.d from engine.c
making envir.d from envir.c
making errors.d from errors.c
making eval.d from eval.c
making format.d from format.c
making gevents.d from gevents.c
making gram.d from gram.c
making gram-ex.d from gram-ex.c
making graphics.d from graphics.c
making grep.d from grep.c
making identical.d from identical.c
making inlined.d from inlined.c
making inspect.d from inspect.c
making internet.d from internet.c
making iosupport.d from iosupport.c
making lapack.d from lapack.c
making list.d from list.c
making localecharset.d from localecharset.c
making logic.d from logic.c
making main.d from main.c
making mapply.d from mapply.c
making match.d from match.c
making memory.d from memory.c
making names.d from names.c
making objects.d from objects.c
making options.d from options.c
making paste.d from paste.c
making platform.d from platform.c
making plot.d from plot.c
making plot3d.d from plot3d.c
making plotmath.d from plotmath.c
making print.d from print.c
making printarray.d from printarray.c
making printvector.d from printvector.c
making printutils.d from printutils.c
making qsort.d from qsort.c
making random.d from random.c
making raw.d from raw.c
making registration.d from registration.c
making relop.d from relop.c
making rlocale.d from rlocale.c
making saveload.d from saveload.c
making scan.d from scan.c
making seq.d from seq.c
making serialize.d from serialize.c
making sort.d from sort.c
making source.d from source.c
making split.d from split.c
making sprintf.d from sprintf.c
making startup.d from startup.c
making subassign.d from subassign.c
making subscript.d from subscript.c
making subset.d from subset.c
making summary.d from summary.c
making sysutils.d from sysutils.c
making times.d from times.c
making unique.d from unique.c
making util.d from util.c
making version.d from version.c
making g_alab_her.d from g_alab_her.c
making g_cntrlify.d from g_cntrlify.c
making g_fontdb.d from g_fontdb.c
making g_her_glyph.d from g_her_glyph.c
making Rmain.d from Rmain.c
making alloca.d from alloca.c
making mkdtemp.d from mkdtemp.c
making strdup.d from strdup.c
making strncasecmp.d from strncasecmp.c
make[4]: Entering directory '/«PKGBUILDDIR»/src/main'
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CommandLineArgs.c -o CommandLineArgs.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Rdynload.c -o Rdynload.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Renviron.c -o Renviron.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c RNG.c -o RNG.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c agrep.c -o agrep.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c apply.c -o apply.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c arithmetic.c -o arithmetic.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c array.c -o array.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c attrib.c -o attrib.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bind.c -o bind.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c builtin.c -o builtin.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c character.c -o character.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c coerce.c -o coerce.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c colors.c -o colors.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c complex.c -o complex.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c connections.c -o connections.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c context.c -o context.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cum.c -o cum.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dcf.c -o dcf.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c datetime.c -o datetime.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c debug.c -o debug.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c deparse.c -o deparse.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c devices.c -o devices.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dotcode.c -o dotcode.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dounzip.c -o dounzip.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dstruct.c -o dstruct.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c duplicate.c -o duplicate.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c edit.c -o edit.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c engine.c -o engine.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c envir.c -o envir.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c errors.c -o errors.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c eval.c -o eval.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c format.c -o format.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gevents.c -o gevents.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gram.c -o gram.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gram-ex.c -o gram-ex.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c graphics.c -o graphics.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c grep.c -o grep.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c identical.c -o identical.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c inlined.c -o inlined.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c inspect.c -o inspect.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c internet.c -o internet.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c iosupport.c -o iosupport.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c lapack.c -o lapack.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c list.c -o list.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c localecharset.c -o localecharset.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c logic.c -o logic.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c main.c -o main.o
main.c: In function 'dummy_ii':
main.c:1606:12: warning: function returns address of local variable [-Wreturn-local-addr]
     return (uintptr_t) &ii;
            ^
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c mapply.c -o mapply.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c match.c -o match.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c memory.c -o memory.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c names.c -o names.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c objects.c -o objects.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c options.c -o options.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c paste.c -o paste.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c platform.c -o platform.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plot.c -o plot.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plot3d.c -o plot3d.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plotmath.c -o plotmath.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c print.c -o print.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c printarray.c -o printarray.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c printvector.c -o printvector.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c printutils.c -o printutils.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c qsort.c -o qsort.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c random.c -o random.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c raw.c -o raw.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c registration.c -o registration.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c relop.c -o relop.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rlocale.c -o rlocale.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c saveload.c -o saveload.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c scan.c -o scan.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c seq.c -o seq.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c serialize.c -o serialize.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sort.c -o sort.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c source.c -o source.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c split.c -o split.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sprintf.c -o sprintf.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c startup.c -o startup.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c subassign.c -o subassign.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c subscript.c -o subscript.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c subset.c -o subset.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c summary.c -o summary.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sysutils.c -o sysutils.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c times.c -o times.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c unique.c -o unique.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c util.c -o util.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c version.c -o version.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c g_alab_her.c -o g_alab_her.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c g_cntrlify.c -o g_cntrlify.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c g_fontdb.c -o g_fontdb.o
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c g_her_glyph.c -o g_her_glyph.o
gfortran  -fopenmp -fpic  -g -O2 -fstack-protector-strong -c xxxpr.f -o xxxpr.o
gcc -std=gnu99 -shared -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro  -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o names.o objects.o options.o paste.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o   `ls ../unix/*.o ../appl/*.o ../nmath/*.o`    ../extra/tre/libtre.a     -lblas -lgfortran -lm -lquadmath   -lreadline  -lpcre -llzma -lbz2 -lz -lrt -ldl -lm  
make[5]: Entering directory '/«PKGBUILDDIR»/src/main'
mkdir -p -- /«PKGBUILDDIR»/bin/exec
mkdir -p -- /«PKGBUILDDIR»/lib
make[5]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[4]: Entering directory '/«PKGBUILDDIR»/src/main'
gcc -std=gnu99    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Rmain.c -o Rmain.o
gcc -std=gnu99 -Wl,--export-dynamic -fopenmp  -L../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o R.bin Rmain.o  -lR 
make[5]: Entering directory '/«PKGBUILDDIR»/src/main'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[3]: Entering directory '/«PKGBUILDDIR»/src/modules'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/internet'
making Rhttpd.d from Rhttpd.c
making Rsock.d from Rsock.c
making internet.d from internet.c
making libcurl.d from libcurl.c
making nanoftp.d from nanoftp.c
making nanohttp.d from nanohttp.c
making sock.d from sock.c
making sockconn.d from sockconn.c
make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/internet'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -fvisibility=hidden -c Rhttpd.c -o Rhttpd.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -fvisibility=hidden -c Rsock.c -o Rsock.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -fvisibility=hidden -c internet.c -o internet.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -fvisibility=hidden -c libcurl.c -o libcurl.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -fvisibility=hidden -c nanoftp.c -o nanoftp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -fvisibility=hidden -c nanohttp.c -o nanohttp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -fvisibility=hidden -c sock.c -o sock.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -fvisibility=hidden -c sockconn.c -o sockconn.o
gcc -std=gnu99 -shared -L../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o internet.so Rhttpd.o Rsock.o internet.o libcurl.o nanoftp.o nanohttp.o sock.o sockconn.o -L/usr/lib/i386-linux-gnu -lcurl -lR  
make[6]: Entering directory '/«PKGBUILDDIR»/src/modules/internet'
mkdir -p -- /«PKGBUILDDIR»/modules
make[6]: Leaving directory '/«PKGBUILDDIR»/src/modules/internet'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/internet'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/internet'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/lapack'
making Lapack.d from Lapack.c
make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/lapack'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Lapack.c -o Lapack.o
gcc -std=gnu99 -shared -L../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o lapack.so  Lapack.o  -lR  -llapack -lblas -lgfortran -lm -lquadmath
make[6]: Entering directory '/«PKGBUILDDIR»/src/modules/lapack'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/modules/lapack'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/lapack'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/lapack'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/X11'
making devX11.d from devX11.c
making rotated.d from rotated.c
making rbitmap.d from rbitmap.c
make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/X11'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c devX11.c -o devX11.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rotated.c -o rotated.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rbitmap.c -o rbitmap.o
gcc -std=gnu99 -shared -L../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o R_X11.so devX11.o rotated.o rbitmap.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng12 -lz -lcairo -lX11 -lXext -lX11 -lXt  -ltiff -ljpeg -lpng -lz -lR -lm 
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dataentry.c -o dataentry.o
gcc -std=gnu99 -shared -L../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o R_de.so dataentry.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng12 -lz -lcairo -lX11 -lXext -lX11 -lXt  -lR -lm 
make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11'
make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/X11'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/modules'
make[3]: Entering directory '/«PKGBUILDDIR»/src/library'
mkdir -p -- ../../library
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/profile'
building system startup profile
mkdir -p -- ../../../library/base/R
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/profile'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/translations'
building package 'translations'
mkdir -p -- ../../../library/translations
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/translations'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/translations'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/translations'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/base'
building package 'base'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/base'
mkdir -p -- ../../../library/base/demo
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
building package 'tools'
mkdir -p -- ../../../library/tools
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
mkdir -p -- ../../../library/tools/R
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/tools/src'
making text.d from text.c
making init.d from init.c
making Rmd5.d from Rmd5.c
making md5.d from md5.c
making signals.d from signals.c
making install.d from install.c
making getfmts.d from getfmts.c
making http.d from http.c
making gramLatex.d from gramLatex.c
making gramRd.d from gramRd.c
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c text.c -o text.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Rmd5.c -o Rmd5.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c md5.c -o md5.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c signals.c -o signals.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c install.c -o install.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c getfmts.c -o getfmts.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c http.c -o http.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gramLatex.c -o gramLatex.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gramRd.c -o gramRd.o
gcc -std=gnu99 -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o -L../../../../lib -lR
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/tools/src'
mkdir -p -- ../../../../library/tools/libs
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/tools/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/tools/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
installing 'sysdata.rda'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/compiler'
building package 'compiler'
mkdir -p -- ../../../library/compiler
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/compiler'
mkdir -p -- ../../../library/compiler/R
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/compiler'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/compiler'
byte-compiling package 'compiler'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/compiler'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/compiler'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/base'
byte-compiling package 'base'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
byte-compiling package 'tools'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/utils'
building package 'utils'
mkdir -p -- ../../../library/utils
mkdir -p -- ../../../library/utils/doc
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/utils'
mkdir -p -- ../../../library/utils/R
mkdir -p -- ../../../library/utils/Sweave
mkdir -p -- ../../../library/utils/misc
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/utils'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/utils'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/utils/src'
making init.d from init.c
making io.d from io.c
making size.d from size.c
making sock.d from sock.c
making stubs.d from stubs.c
making utils.d from utils.c
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c io.c -o io.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c size.c -o size.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sock.c -o sock.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stubs.c -o stubs.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o
gcc -std=gnu99 -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o utils.so init.o io.o size.o sock.o stubs.o utils.o -L../../../../lib -lR
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/utils/src'
mkdir -p -- ../../../../library/utils/libs
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/utils/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/utils/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/utils'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/utils'
byte-compiling package 'utils'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/utils'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/utils'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices'
building package 'grDevices'
mkdir -p -- ../../../library/grDevices
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices'
mkdir -p -- ../../../library/grDevices/R
mkdir -p -- ../../../library/grDevices/afm
mkdir -p -- ../../../library/grDevices/enc
mkdir -p -- ../../../library/grDevices/icc
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src'
making axis_scales.d from axis_scales.c
making chull.d from chull.c
making devices.d from devices.c
making init.d from init.c
making stubs.d from stubs.c
making colors.d from colors.c
making devCairo.d from devCairo.c
making devPicTeX.d from devPicTeX.c
making devPS.d from devPS.c
making devQuartz.d from devQuartz.c
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c axis_scales.c -o axis_scales.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c chull.c -o chull.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c devices.c -o devices.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stubs.c -o stubs.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c colors.c -o colors.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c devCairo.c -o devCairo.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c devPicTeX.c -o devPicTeX.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c devPS.c -o devPS.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c devQuartz.c -o devQuartz.o
gcc -std=gnu99 -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o devCairo.o devPicTeX.o devPS.o devQuartz.o -lz -L../../../../lib -lR
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src'
mkdir -p -- ../../../../library/grDevices/libs
make[8]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
making cairoBM.d from cairoBM.c
make[9]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[10]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
gcc -std=gnu99 -I. -I../../../../../src/include -I../../../../../src/include -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../../../src/modules/X11  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cairoBM.c -o cairoBM.o
gcc -std=gnu99 -shared -L../../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng12 -lz -lcairo -ltiff -ljpeg -lpng -lz -L../../../../../lib -lR -lm 
make[10]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[9]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[8]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices'
byte-compiling package 'grDevices'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/graphics'
building package 'graphics'
mkdir -p -- ../../../library/graphics
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/graphics'
mkdir -p -- ../../../library/graphics/R
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/graphics'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/graphics/src'
making init.d from init.c
making base.d from base.c
making graphics.d from graphics.c
making par.d from par.c
making plot.d from plot.c
making plot3d.d from plot3d.c
making stem.d from stem.c
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c base.c -o base.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c graphics.c -o graphics.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c par.c -o par.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plot.c -o plot.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c plot3d.c -o plot3d.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stem.c -o stem.o
gcc -std=gnu99 -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/graphics/src'
mkdir -p -- ../../../../library/graphics/libs
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/graphics'
byte-compiling package 'graphics'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/stats'
building package 'stats'
mkdir -p -- ../../../library/stats
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats'
mkdir -p -- ../../../library/stats/R
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/stats/src'
making init.d from init.c
making kmeans.d from kmeans.c
making ansari.d from ansari.c
making bandwidths.d from bandwidths.c
making chisqsim.d from chisqsim.c
making d2x2xk.d from d2x2xk.c
making fexact.d from fexact.c
making kendall.d from kendall.c
making ks.d from ks.c
making line.d from line.c
making smooth.d from smooth.c
making prho.d from prho.c
making swilk.d from swilk.c
making ksmooth.d from ksmooth.c
making loessc.d from loessc.c
making monoSpl.d from monoSpl.c
making isoreg.d from isoreg.c
making Srunmed.d from Srunmed.c
making dblcen.d from dblcen.c
making distance.d from distance.c
making hclust-utils.d from hclust-utils.c
making nls.d from nls.c
making rWishart.d from rWishart.c
making HoltWinters.d from HoltWinters.c
making PPsum.d from PPsum.c
making arima.d from arima.c
making burg.d from burg.c
making filter.d from filter.c
making mAR.d from mAR.c
making pacf.d from pacf.c
making starma.d from starma.c
making port.d from port.c
making family.d from family.c
making sbart.d from sbart.c
making approx.d from approx.c
making loglin.d from loglin.c
making lowess.d from lowess.c
making massdist.d from massdist.c
making splines.d from splines.c
making lm.d from lm.c
making complete_cases.d from complete_cases.c
making cov.d from cov.c
making deriv.d from deriv.c
making fft.d from fft.c
making fourier.d from fourier.c
making model.d from model.c
making optim.d from optim.c
making optimize.d from optimize.c
making integrate.d from integrate.c
making random.d from random.c
making distn.d from distn.c
making zeroin.d from zeroin.c
making rcont.d from rcont.c
making influence.d from influence.c
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c kmeans.c -o kmeans.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ansari.c -o ansari.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bandwidths.c -o bandwidths.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c chisqsim.c -o chisqsim.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c d2x2xk.c -o d2x2xk.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fexact.c -o fexact.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c kendall.c -o kendall.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ks.c -o ks.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c line.c -o line.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c smooth.c -o smooth.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c prho.c -o prho.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c swilk.c -o swilk.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ksmooth.c -o ksmooth.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c loessc.c -o loessc.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c monoSpl.c -o monoSpl.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c isoreg.c -o isoreg.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Srunmed.c -o Srunmed.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dblcen.c -o dblcen.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c distance.c -o distance.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c hclust-utils.c -o hclust-utils.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c nls.c -o nls.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rWishart.c -o rWishart.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c HoltWinters.c -o HoltWinters.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c PPsum.c -o PPsum.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c arima.c -o arima.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c burg.c -o burg.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c filter.c -o filter.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c mAR.c -o mAR.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c pacf.c -o pacf.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c starma.c -o starma.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c port.c -o port.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c family.c -o family.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sbart.c -o sbart.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c approx.c -o approx.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c loglin.c -o loglin.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c lowess.c -o lowess.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c massdist.c -o massdist.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c splines.c -o splines.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c lm.c -o lm.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c complete_cases.c -o complete_cases.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cov.c -o cov.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c deriv.c -o deriv.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fft.c -o fft.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fourier.c -o fourier.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c model.c -o model.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c optim.c -o optim.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c optimize.c -o optimize.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c integrate.c -o integrate.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c random.c -o random.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c distn.c -o distn.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c zeroin.c -o zeroin.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rcont.c -o rcont.o
gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c influence.c -o influence.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c bsplvd.f -o bsplvd.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c bvalue.f -o bvalue.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c bvalus.f -o bvalus.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c loessf.f -o loessf.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c ppr.f -o ppr.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c qsbart.f -o qsbart.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c sgram.f -o sgram.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c sinerp.f -o sinerp.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c sslvrg.f -o sslvrg.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c stxwx.f -o stxwx.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c hclust.f -o hclust.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c kmns.f -o kmns.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c eureka.f -o eureka.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c stl.f -o stl.o
gfortran -fpic  -g -O2 -fstack-protector-strong -ffloat-store -c portsrc.f -o portsrc.o
gfortran  -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -c lminfl.f -o lminfl.o
gcc -std=gnu99 -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L../../../../lib -lR
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/stats/src'
mkdir -p -- ../../../../library/stats/libs
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/stats/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/stats/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats'
byte-compiling package 'stats'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/stats'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/datasets'
building package 'datasets'
mkdir -p -- ../../../library/datasets
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/datasets'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/datasets'
mkdir -p -- ../../../library/datasets/data
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/datasets'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
building package 'methods'
mkdir -p -- ../../../library/methods
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
mkdir -p -- ../../../library/methods/R
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/methods/src'
making do_substitute_direct.d from do_substitute_direct.c
making init.d from init.c
making methods_list_dispatch.d from methods_list_dispatch.c
making slot.d from slot.c
making class_support.d from class_support.c
making tests.d from tests.c
making utils.d from utils.c
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c do_substitute_direct.c -o do_substitute_direct.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c methods_list_dispatch.c -o methods_list_dispatch.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c slot.c -o slot.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c class_support.c -o class_support.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c tests.c -o tests.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o
gcc -std=gnu99 -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/methods/src'
mkdir -p -- ../../../../library/methods/libs
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/methods/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/methods/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
byte-compiling 'methods'
initializing class and method definitions ... done
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
building package 'grid'
mkdir -p -- ../../../library/grid
mkdir -p -- ../../../library/grid/doc
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
mkdir -p -- ../../../library/grid/R
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/grid/src'
making gpar.d from gpar.c
making grid.d from grid.c
making just.d from just.c
making layout.d from layout.c
making matrix.d from matrix.c
making register.d from register.c
making state.d from state.c
making unit.d from unit.c
making util.d from util.c
making viewport.d from viewport.c
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c gpar.c -o gpar.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c grid.c -o grid.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c just.c -o just.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c layout.c -o layout.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c matrix.c -o matrix.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c register.c -o register.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c state.c -o state.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c unit.c -o unit.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c util.c -o util.o
gcc -std=gnu99 -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c viewport.c -o viewport.o
gcc -std=gnu99 -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o grid.so gpar.o grid.o just.o layout.o matrix.o register.o state.o unit.o util.o viewport.o -L../../../../lib -lR
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/grid/src'
mkdir -p -- ../../../../library/grid/libs
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/grid/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/grid/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
byte-compiling package 'grid'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
building package 'splines'
mkdir -p -- ../../../library/splines
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
mkdir -p -- ../../../library/splines/R
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/splines/src'
making splines.d from splines.c
gcc -std=gnu99 -I../../../../include -DNDEBUG      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c splines.c -o splines.o
gcc -std=gnu99 -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o splines.so splines.o -L../../../../lib -lR
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/splines/src'
mkdir -p -- ../../../../library/splines/libs
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/splines/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/splines/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
byte-compiling package 'splines'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/stats4'
building package 'stats4'
mkdir -p -- ../../../library/stats4
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats4'
mkdir -p -- ../../../library/stats4/R
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats4'
byte-compiling package 'stats4'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk'
building package 'tcltk'
mkdir -p -- ../../../library/tcltk/R
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk'
mkdir -p -- ../../../library/tcltk/exec
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk/src'
making init.d from init.c
making tcltk.d from tcltk.c
making tcltk_unix.d from tcltk_unix.c
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c tcltk.c -o tcltk.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c tcltk_unix.c -o tcltk_unix.o
gcc -std=gnu99 -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/lib/i386-linux-gnu -ltcl8.6 -L/usr/lib/i386-linux-gnu -ltk8.6 -lX11 -lXss -lXext -lm -L../../../../lib -lR
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk/src'
mkdir -p -- ../../../../library/tcltk/libs
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk/src'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk'
byte-compiling package 'tcltk'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
building package 'parallel'
mkdir -p -- ../../../library/parallel
mkdir -p -- ../../../library/parallel/doc
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
mkdir -p -- ../../../library/parallel/R
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/parallel/src'
making init.d from init.c
making rngstream.d from rngstream.c
making fork.d from fork.c
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rngstream.c -o rngstream.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c fork.c -o fork.o
gcc -std=gnu99 -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/parallel/src'
mkdir -p -- ../../../../library/parallel/libs
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
byte-compiling package 'parallel'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
installing parsed NAMESPACE files
make[3]: Leaving directory '/«PKGBUILDDIR»/src/library'
make[2]: Leaving directory '/«PKGBUILDDIR»/src'
make[2]: Entering directory '/«PKGBUILDDIR»/tests'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/«PKGBUILDDIR»/tests'
you should 'make docs' now ...
make[1]: Leaving directory '/«PKGBUILDDIR»'
(cd src/nmath/standalone;				\
	/usr/bin/make	CFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT"		\
		CXXFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT"	\
		FFLAGS="-g -O2 -fstack-protector-strong -D_REENTRANT"	\
		CC="gcc -std=gnu99"				\
		CXX=g++			\
		F77=gfortran			\
		libRmath_la_LDFLAGS=-Wl,-soname,libRmath.so.1 \
		shared static )
make[1]: Entering directory '/«PKGBUILDDIR»/src/nmath/standalone'
(cd ../../include; /usr/bin/make Rmath.h)
make[2]: Entering directory '/«PKGBUILDDIR»/src/include'
make[2]: 'Rmath.h' is up to date.
make[2]: Leaving directory '/«PKGBUILDDIR»/src/include'
Copying source files
make[2]: Entering directory '/«PKGBUILDDIR»/src/nmath/standalone'
making mlutils.d from mlutils.c
making d1mach.d from d1mach.c
making i1mach.d from i1mach.c
making fmax2.d from fmax2.c
making fmin2.d from fmin2.c
making fprec.d from fprec.c
making fround.d from fround.c
making ftrunc.d from ftrunc.c
making sign.d from sign.c
making fsign.d from fsign.c
making imax2.d from imax2.c
making imin2.d from imin2.c
making chebyshev.d from chebyshev.c
making log1p.d from log1p.c
making expm1.d from expm1.c
making lgammacor.d from lgammacor.c
making gammalims.d from gammalims.c
making stirlerr.d from stirlerr.c
making bd0.d from bd0.c
making gamma.d from gamma.c
making lgamma.d from lgamma.c
making gamma_cody.d from gamma_cody.c
making beta.d from beta.c
making lbeta.d from lbeta.c
making polygamma.d from polygamma.c
making cospi.d from cospi.c
making bessel_i.d from bessel_i.c
making bessel_j.d from bessel_j.c
making bessel_k.d from bessel_k.c
making bessel_y.d from bessel_y.c
making choose.d from choose.c
making snorm.d from snorm.c
making sexp.d from sexp.c
making dgamma.d from dgamma.c
making pgamma.d from pgamma.c
making qgamma.d from qgamma.c
making rgamma.d from rgamma.c
making dbeta.d from dbeta.c
making pbeta.d from pbeta.c
making qbeta.d from qbeta.c
making rbeta.d from rbeta.c
making dunif.d from dunif.c
making punif.d from punif.c
making qunif.d from qunif.c
making runif.d from runif.c
making dnorm.d from dnorm.c
making pnorm.d from pnorm.c
making qnorm.d from qnorm.c
making rnorm.d from rnorm.c
making dlnorm.d from dlnorm.c
making plnorm.d from plnorm.c
making qlnorm.d from qlnorm.c
making rlnorm.d from rlnorm.c
making df.d from df.c
making pf.d from pf.c
making qf.d from qf.c
making rf.d from rf.c
making dnf.d from dnf.c
making dt.d from dt.c
making pt.d from pt.c
making qt.d from qt.c
making rt.d from rt.c
making dnt.d from dnt.c
making dchisq.d from dchisq.c
making pchisq.d from pchisq.c
making qchisq.d from qchisq.c
making rchisq.d from rchisq.c
making rnchisq.d from rnchisq.c
making dbinom.d from dbinom.c
making pbinom.d from pbinom.c
making qbinom.d from qbinom.c
making rbinom.d from rbinom.c
making rmultinom.d from rmultinom.c
making dcauchy.d from dcauchy.c
making pcauchy.d from pcauchy.c
making qcauchy.d from qcauchy.c
making rcauchy.d from rcauchy.c
making dexp.d from dexp.c
making pexp.d from pexp.c
making qexp.d from qexp.c
making rexp.d from rexp.c
making dgeom.d from dgeom.c
making pgeom.d from pgeom.c
making qgeom.d from qgeom.c
making rgeom.d from rgeom.c
making dhyper.d from dhyper.c
making phyper.d from phyper.c
making qhyper.d from qhyper.c
making rhyper.d from rhyper.c
making dnbinom.d from dnbinom.c
making pnbinom.d from pnbinom.c
making qnbinom.d from qnbinom.c
making rnbinom.d from rnbinom.c
making dpois.d from dpois.c
making ppois.d from ppois.c
making qpois.d from qpois.c
making rpois.d from rpois.c
making dweibull.d from dweibull.c
making pweibull.d from pweibull.c
making qweibull.d from qweibull.c
making rweibull.d from rweibull.c
making dlogis.d from dlogis.c
making plogis.d from plogis.c
making qlogis.d from qlogis.c
making rlogis.d from rlogis.c
making dnchisq.d from dnchisq.c
making pnchisq.d from pnchisq.c
making qnchisq.d from qnchisq.c
making dnbeta.d from dnbeta.c
making pnbeta.d from pnbeta.c
making qnbeta.d from qnbeta.c
making pnf.d from pnf.c
making pnt.d from pnt.c
making qnf.d from qnf.c
making qnt.d from qnt.c
making ptukey.d from ptukey.c
making qtukey.d from qtukey.c
making toms708.d from toms708.c
making wilcox.d from wilcox.c
making signrank.d from signrank.c
making std_unif.d from std_unif.c
make[2]: Leaving directory '/«PKGBUILDDIR»/src/nmath/standalone'
make[2]: Entering directory '/«PKGBUILDDIR»/src/nmath/standalone'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c mlutils.c -o mlutils.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c d1mach.c -o d1mach.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c i1mach.c -o i1mach.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fmax2.c -o fmax2.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fmin2.c -o fmin2.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fprec.c -o fprec.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fround.c -o fround.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ftrunc.c -o ftrunc.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c sign.c -o sign.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fsign.c -o fsign.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c imax2.c -o imax2.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c imin2.c -o imin2.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c chebyshev.c -o chebyshev.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c log1p.c -o log1p.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c expm1.c -o expm1.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lgammacor.c -o lgammacor.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gammalims.c -o gammalims.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c stirlerr.c -o stirlerr.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bd0.c -o bd0.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gamma.c -o gamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lgamma.c -o lgamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gamma_cody.c -o gamma_cody.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c beta.c -o beta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lbeta.c -o lbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c polygamma.c -o polygamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c cospi.c -o cospi.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_i.c -o bessel_i.lo
In file included from bessel_i.c:26:0:
bessel_i.c: In function 'bessel_i':
bessel_i.c:77:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_i.c:77:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
bessel_i.c:77:25: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_i.c:77:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
bessel_i.c: In function 'bessel_i_ex':
bessel_i.c:122:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_i.c:122:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
bessel_i.c:122:25: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_i.c:122:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_j.c -o bessel_j.lo
In file included from bessel_j.c:27:0:
bessel_j.c: In function 'bessel_j':
bessel_j.c:79:21: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_j.c:79:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
bessel_j.c:79:21: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_j.c:79:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
bessel_j.c: In function 'bessel_j_ex':
bessel_j.c:125:21: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_j.c:125:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
bessel_j.c:125:21: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_j.c:125:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_k.c -o bessel_k.lo
In file included from bessel_k.c:27:0:
bessel_k.c: In function 'bessel_k':
bessel_k.c:71:21: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_k.c:71:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
bessel_k.c:71:21: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_k.c:71:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
bessel_k.c: In function 'bessel_k_ex':
bessel_k.c:108:21: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_k.c:108:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
bessel_k.c:108:21: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_k.c:108:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_y.c -o bessel_y.lo
In file included from bessel_y.c:26:0:
bessel_y.c: In function 'bessel_y':
bessel_y.c:86:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_y.c:86:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
bessel_y.c:86:25: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_y.c:86:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
bessel_y.c: In function 'bessel_y_ex':
bessel_y.c:134:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_y.c:134:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
bessel_y.c:134:25: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_y.c:134:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c choose.c -o choose.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c snorm.c -o snorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c sexp.c -o sexp.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dgamma.c -o dgamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pgamma.c -o pgamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qgamma.c -o qgamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rgamma.c -o rgamma.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dbeta.c -o dbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pbeta.c -o pbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qbeta.c -o qbeta.lo
In file included from qbeta.c:33:0:
../../../src/include/R_ext/Arith.h:89:0: warning: "R_FINITE" redefined
 # define R_FINITE(x)    isfinite(x)
 ^
In file included from qbeta.c:31:0:
./../nmath.h:107:0: note: this is the location of the previous definition
 #define R_FINITE(x)    R_finite(x)
 ^
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rbeta.c -o rbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dunif.c -o dunif.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c punif.c -o punif.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qunif.c -o qunif.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c runif.c -o runif.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnorm.c -o dnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnorm.c -o pnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnorm.c -o qnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnorm.c -o rnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dlnorm.c -o dlnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c plnorm.c -o plnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qlnorm.c -o qlnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rlnorm.c -o rlnorm.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c df.c -o df.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pf.c -o pf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qf.c -o qf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rf.c -o rf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnf.c -o dnf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dt.c -o dt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pt.c -o pt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qt.c -o qt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rt.c -o rt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnt.c -o dnt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dchisq.c -o dchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pchisq.c -o pchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qchisq.c -o qchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rchisq.c -o rchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnchisq.c -o rnchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dbinom.c -o dbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pbinom.c -o pbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qbinom.c -o qbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rbinom.c -o rbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rmultinom.c -o rmultinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dcauchy.c -o dcauchy.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pcauchy.c -o pcauchy.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qcauchy.c -o qcauchy.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rcauchy.c -o rcauchy.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dexp.c -o dexp.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pexp.c -o pexp.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qexp.c -o qexp.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rexp.c -o rexp.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dgeom.c -o dgeom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pgeom.c -o pgeom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qgeom.c -o qgeom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rgeom.c -o rgeom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dhyper.c -o dhyper.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c phyper.c -o phyper.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qhyper.c -o qhyper.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rhyper.c -o rhyper.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnbinom.c -o dnbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnbinom.c -o pnbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnbinom.c -o qnbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnbinom.c -o rnbinom.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dpois.c -o dpois.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ppois.c -o ppois.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qpois.c -o qpois.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rpois.c -o rpois.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dweibull.c -o dweibull.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pweibull.c -o pweibull.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qweibull.c -o qweibull.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rweibull.c -o rweibull.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dlogis.c -o dlogis.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c plogis.c -o plogis.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qlogis.c -o qlogis.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rlogis.c -o rlogis.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnchisq.c -o dnchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnchisq.c -o pnchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnchisq.c -o qnchisq.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnbeta.c -o dnbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnbeta.c -o pnbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnbeta.c -o qnbeta.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnf.c -o pnf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnt.c -o pnt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnf.c -o qnf.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnt.c -o qnt.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ptukey.c -o ptukey.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qtukey.c -o qtukey.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c toms708.c -o toms708.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c wilcox.c -o wilcox.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c signrank.c -o signrank.lo
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c std_unif.c -o std_unif.lo
gcc -std=gnu99 -shared -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -o libRmath.so -Wl,-soname,libRmath.so.1 mlutils.lo d1mach.lo i1mach.lo fmax2.lo fmin2.lo fprec.lo fround.lo ftrunc.lo sign.lo fsign.lo imax2.lo imin2.lo chebyshev.lo log1p.lo expm1.lo lgammacor.lo gammalims.lo stirlerr.lo bd0.lo gamma.lo lgamma.lo gamma_cody.lo beta.lo lbeta.lo polygamma.lo cospi.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_y.lo choose.lo snorm.lo sexp.lo dgamma.lo pgamma.lo qgamma.lo rgamma.lo dbeta.lo pbeta.lo qbeta.lo rbeta.lo dunif.lo punif.lo qunif.lo runif.lo dnorm.lo pnorm.lo qnorm.lo rnorm.lo dlnorm.lo plnorm.lo qlnorm.lo rlnorm.lo df.lo pf.lo qf.lo rf.lo dnf.lo dt.lo pt.lo qt.lo rt.lo dnt.lo dchisq.lo pchisq.lo qchisq.lo rchisq.lo rnchisq.lo dbinom.lo pbinom.lo qbinom.lo rbinom.lo rmultinom.lo dcauchy.lo pcauchy.lo qcauchy.lo rcauchy.lo dexp.lo pexp.lo qexp.lo rexp.lo dgeom.lo pgeom.lo qgeom.lo rgeom.lo dhyper.lo phyper.lo qhyper.lo rhyper.lo dnbinom.lo pnbinom.lo qnbinom.lo rnbinom.lo dpois.lo ppois.lo qpois.lo rpois.lo dweibull.lo pweibull.lo qweibull.lo rweibull.lo dlogis.lo plogis.lo qlogis.lo rlogis.lo dnchisq.lo pnchisq.lo qnchisq.lo dnbeta.lo pnbeta.lo qnbeta.lo pnf.lo pnt.lo qnf.lo qnt.lo ptukey.lo qtukey.lo toms708.lo wilcox.lo signrank.lo std_unif.lo -lm
make[2]: Leaving directory '/«PKGBUILDDIR»/src/nmath/standalone'
make[2]: Entering directory '/«PKGBUILDDIR»/src/nmath/standalone'
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c mlutils.c -o mlutils.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c d1mach.c -o d1mach.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c i1mach.c -o i1mach.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fmax2.c -o fmax2.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fmin2.c -o fmin2.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fprec.c -o fprec.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fround.c -o fround.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ftrunc.c -o ftrunc.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c sign.c -o sign.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fsign.c -o fsign.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c imax2.c -o imax2.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c imin2.c -o imin2.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c chebyshev.c -o chebyshev.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c log1p.c -o log1p.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c expm1.c -o expm1.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lgammacor.c -o lgammacor.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gammalims.c -o gammalims.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c stirlerr.c -o stirlerr.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bd0.c -o bd0.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gamma.c -o gamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lgamma.c -o lgamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gamma_cody.c -o gamma_cody.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c beta.c -o beta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lbeta.c -o lbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c polygamma.c -o polygamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c cospi.c -o cospi.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_i.c -o bessel_i.o
In file included from bessel_i.c:26:0:
bessel_i.c: In function 'bessel_i':
bessel_i.c:77:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_i.c:77:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
bessel_i.c:77:25: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_i.c:77:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
bessel_i.c: In function 'bessel_i_ex':
bessel_i.c:122:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_i.c:122:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
bessel_i.c:122:25: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_i.c:122:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_j.c -o bessel_j.o
In file included from bessel_j.c:27:0:
bessel_j.c: In function 'bessel_j':
bessel_j.c:79:21: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_j.c:79:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
bessel_j.c:79:21: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_j.c:79:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
bessel_j.c: In function 'bessel_j_ex':
bessel_j.c:125:21: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_j.c:125:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
bessel_j.c:125:21: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_j.c:125:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_k.c -o bessel_k.o
In file included from bessel_k.c:27:0:
bessel_k.c: In function 'bessel_k':
bessel_k.c:71:21: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_k.c:71:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
bessel_k.c:71:21: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_k.c:71:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
bessel_k.c: In function 'bessel_k_ex':
bessel_k.c:108:21: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_k.c:108:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
bessel_k.c:108:21: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                     ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_k.c:108:19: note: in expansion of macro '_'
  MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                   ^
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_y.c -o bessel_y.o
In file included from bessel_y.c:26:0:
bessel_y.c: In function 'bessel_y':
bessel_y.c:86:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_y.c:86:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
bessel_y.c:86:25: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_y.c:86:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
bessel_y.c: In function 'bessel_y_ex':
bessel_y.c:134:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_y.c:134:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
bessel_y.c:134:25: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=]
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                         ^
./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4'
 #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4)
                                                 ^
bessel_y.c:134:23: note: in expansion of macro '_'
      MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"),
                       ^
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c choose.c -o choose.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c snorm.c -o snorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c sexp.c -o sexp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dgamma.c -o dgamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pgamma.c -o pgamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qgamma.c -o qgamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rgamma.c -o rgamma.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dbeta.c -o dbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pbeta.c -o pbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qbeta.c -o qbeta.o
In file included from qbeta.c:33:0:
../../../src/include/R_ext/Arith.h:89:0: warning: "R_FINITE" redefined
 # define R_FINITE(x)    isfinite(x)
 ^
In file included from qbeta.c:31:0:
./../nmath.h:107:0: note: this is the location of the previous definition
 #define R_FINITE(x)    R_finite(x)
 ^
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rbeta.c -o rbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dunif.c -o dunif.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c punif.c -o punif.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qunif.c -o qunif.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c runif.c -o runif.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnorm.c -o dnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnorm.c -o pnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnorm.c -o qnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnorm.c -o rnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dlnorm.c -o dlnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c plnorm.c -o plnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qlnorm.c -o qlnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rlnorm.c -o rlnorm.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c df.c -o df.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pf.c -o pf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qf.c -o qf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rf.c -o rf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnf.c -o dnf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dt.c -o dt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pt.c -o pt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qt.c -o qt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rt.c -o rt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnt.c -o dnt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dchisq.c -o dchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pchisq.c -o pchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qchisq.c -o qchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rchisq.c -o rchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnchisq.c -o rnchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dbinom.c -o dbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pbinom.c -o pbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qbinom.c -o qbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rbinom.c -o rbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rmultinom.c -o rmultinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dcauchy.c -o dcauchy.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pcauchy.c -o pcauchy.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qcauchy.c -o qcauchy.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rcauchy.c -o rcauchy.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dexp.c -o dexp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pexp.c -o pexp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qexp.c -o qexp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rexp.c -o rexp.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dgeom.c -o dgeom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pgeom.c -o pgeom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qgeom.c -o qgeom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rgeom.c -o rgeom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dhyper.c -o dhyper.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c phyper.c -o phyper.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qhyper.c -o qhyper.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rhyper.c -o rhyper.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnbinom.c -o dnbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnbinom.c -o pnbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnbinom.c -o qnbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnbinom.c -o rnbinom.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dpois.c -o dpois.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ppois.c -o ppois.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qpois.c -o qpois.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rpois.c -o rpois.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dweibull.c -o dweibull.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pweibull.c -o pweibull.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qweibull.c -o qweibull.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rweibull.c -o rweibull.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dlogis.c -o dlogis.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c plogis.c -o plogis.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qlogis.c -o qlogis.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rlogis.c -o rlogis.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnchisq.c -o dnchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnchisq.c -o pnchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnchisq.c -o qnchisq.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnbeta.c -o dnbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnbeta.c -o pnbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnbeta.c -o qnbeta.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnf.c -o pnf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnt.c -o pnt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnf.c -o qnf.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnt.c -o qnt.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ptukey.c -o ptukey.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qtukey.c -o qtukey.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c toms708.c -o toms708.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c wilcox.c -o wilcox.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c signrank.c -o signrank.o
gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./..  -DHAVE_CONFIG_H -DMATHLIB_STANDALONE  -fopenmp  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c std_unif.c -o std_unif.o
ar cr libRmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o std_unif.o
ranlib libRmath.a
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make[2]: Leaving directory '/«PKGBUILDDIR»/doc'
make[2]: Entering directory '/«PKGBUILDDIR»/etc'
make[2]: Leaving directory '/«PKGBUILDDIR»/etc'
make[2]: Entering directory '/«PKGBUILDDIR»/share'
make[2]: Leaving directory '/«PKGBUILDDIR»/share'
make[2]: Entering directory '/«PKGBUILDDIR»/src'
make[3]: Entering directory '/«PKGBUILDDIR»/src/scripts'
make[4]: Entering directory '/«PKGBUILDDIR»/src/scripts'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/scripts'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/scripts'
make[3]: Entering directory '/«PKGBUILDDIR»/src/include'
make[4]: Entering directory '/«PKGBUILDDIR»/src/include/R_ext'
make[4]: Nothing to be done for 'R'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/include/R_ext'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/include'
make[3]: Entering directory '/«PKGBUILDDIR»/src/extra'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/tre'
make[5]: Entering directory '/«PKGBUILDDIR»/src/extra/tre'
make[5]: 'Makedeps' is up to date.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre'
make[5]: Entering directory '/«PKGBUILDDIR»/src/extra/tre'
make[5]: 'libtre.a' is up to date.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/extra'
make[3]: Entering directory '/«PKGBUILDDIR»/src/appl'
make[4]: Entering directory '/«PKGBUILDDIR»/src/appl'
make[4]: 'libappl.a' is up to date.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/appl'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/appl'
make[3]: Entering directory '/«PKGBUILDDIR»/src/nmath'
make[4]: Entering directory '/«PKGBUILDDIR»/src/nmath'
make[4]: 'libnmath.a' is up to date.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/nmath'
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make[3]: Entering directory '/«PKGBUILDDIR»/src/unix'
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make[4]: Leaving directory '/«PKGBUILDDIR»/src/unix'
make[4]: Entering directory '/«PKGBUILDDIR»/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H    -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -Wl,-Bsymbolic-functions -Wl,-z,relro -DR_HOME='"/«PKGBUILDDIR»"' \
  -o Rscript ./Rscript.c
make[4]: Leaving directory '/«PKGBUILDDIR»/src/unix'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/unix'
make[3]: Entering directory '/«PKGBUILDDIR»/src/main'
make[4]: Entering directory '/«PKGBUILDDIR»/src/main'
make[5]: Entering directory '/«PKGBUILDDIR»/src/main'
/«PKGBUILDDIR»/lib/libR.so is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/main'
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make[5]: Entering directory '/«PKGBUILDDIR»/src/main'
/«PKGBUILDDIR»/bin/exec/R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/main'
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make[3]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[3]: Entering directory '/«PKGBUILDDIR»/src/modules'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/internet'
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make[5]: 'internet.so' is up to date.
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make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/lapack'
make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/lapack'
make[5]: 'lapack.so' is up to date.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/lapack'
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make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/X11'
make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/X11'
make[5]: 'R_X11.so' is up to date.
make[5]: 'R_de.so' is up to date.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11'
make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/X11'
/«PKGBUILDDIR»/modules/R_X11.so is unchanged
/«PKGBUILDDIR»/modules/R_de.so is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/modules'
make[3]: Entering directory '/«PKGBUILDDIR»/src/library'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/profile'
building system startup profile
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/profile'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/translations'
building package 'translations'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/translations'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/translations'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/translations'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/base'
building package 'base'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/base'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
building package 'tools'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/tools/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/tools/src'
../../../../library/tools/libs/tools.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/tools/src'
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make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
installing 'sysdata.rda'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/compiler'
building package 'compiler'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/compiler'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/compiler'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/compiler'
make[5]: Nothing to be done for 'mklazycomp'.
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make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/compiler'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/utils'
building package 'utils'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/utils'
all.R is unchanged
make[5]: Nothing to be done for 'iconvlist'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/utils'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/utils'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/utils/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/utils/src'
../../../../library/utils/libs/utils.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/utils/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/utils/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/utils'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/utils'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/utils'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/utils'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices'
building package 'grDevices'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src'
../../../../library/grDevices/libs/grDevices.so is unchanged
make[8]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[9]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[10]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[10]: 'cairo.so' is up to date.
make[10]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
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make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/graphics'
building package 'graphics'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/graphics'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/graphics'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/graphics/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/graphics/src'
../../../../library/graphics/libs/graphics.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/graphics'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/stats'
building package 'stats'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/stats/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/stats/src'
../../../../library/stats/libs/stats.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/stats/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/stats/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/stats'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/datasets'
building package 'datasets'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/datasets'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/datasets'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/datasets'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
building package 'methods'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/methods/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/methods/src'
../../../../library/methods/libs/methods.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/methods/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/methods/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
make[5]: Nothing to be done for 'RfilesLazy'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
building package 'grid'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/grid/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/grid/src'
../../../../library/grid/libs/grid.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/grid/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/grid/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
building package 'splines'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/splines/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/splines/src'
../../../../library/splines/libs/splines.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/splines/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/splines/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/stats4'
building package 'stats4'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats4'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats4'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk'
building package 'tcltk'
all.R is unchanged
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk/src'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk/src'
../../../../library/tcltk/libs/tcltk.so is unchanged
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk/src'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
building package 'parallel'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/parallel/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/parallel/src'
../../../../library/parallel/libs/parallel.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
installing parsed NAMESPACE files
make[3]: Leaving directory '/«PKGBUILDDIR»/src/library'
make[2]: Leaving directory '/«PKGBUILDDIR»/src'
make[2]: Entering directory '/«PKGBUILDDIR»/tests'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/«PKGBUILDDIR»/tests'
you should 'make docs' now ...
make[2]: Entering directory '/«PKGBUILDDIR»/doc'
creating NEWS
creating NEWS.pdf
make[3]: Entering directory '/«PKGBUILDDIR»/doc/manual'
creating doc/manual/R-FAQ.html
creating doc/manual/version.texi
creating doc/manual/R-admin.html
creating doc/manual/R-data.html
creating doc/manual/R-exts.html
creating doc/manual/R-intro.html
creating doc/manual/R-ints.html
creating doc/manual/R-lang.html
make[4]: Entering directory '/«PKGBUILDDIR»/doc/html'
make[4]: Leaving directory '/«PKGBUILDDIR»/doc/html'
make[3]: Leaving directory '/«PKGBUILDDIR»/doc/manual'
make[2]: Leaving directory '/«PKGBUILDDIR»/doc'
make[2]: Entering directory '/«PKGBUILDDIR»/src/library'
make[3]: Entering directory '/«PKGBUILDDIR»/src/library'
installing parsed Rd
make[4]: Entering directory '/«PKGBUILDDIR»/src/library'
  base
  stats
  utils
  methods
  graphics
  grDevices
  datasets
  grid
  tools
  tcltk
  splines
  stats4
  compiler
  parallel
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/library'
make[3]: Entering directory '/«PKGBUILDDIR»/src/library'
building/updating package metadata ...
make[3]: Leaving directory '/«PKGBUILDDIR»/src/library'
make[3]: Entering directory '/«PKGBUILDDIR»/src/library'
writing package indices
make[4]: Entering directory '/«PKGBUILDDIR»/src/library'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/library'
make[2]: Leaving directory '/«PKGBUILDDIR»/src/library'
make[1]: Leaving directory '/«PKGBUILDDIR»'
/usr/bin/make javaconf
make[1]: Entering directory '/«PKGBUILDDIR»'
make[2]: Entering directory '/«PKGBUILDDIR»/m4'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/«PKGBUILDDIR»/m4'
make[2]: Entering directory '/«PKGBUILDDIR»/tools'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/«PKGBUILDDIR»/tools'
make[2]: Entering directory '/«PKGBUILDDIR»/doc'
make[3]: Entering directory '/«PKGBUILDDIR»/doc/html'
make[3]: Leaving directory '/«PKGBUILDDIR»/doc/html'
make[3]: Entering directory '/«PKGBUILDDIR»/doc/manual'
make[3]: Nothing to be done for 'R'.
make[3]: Leaving directory '/«PKGBUILDDIR»/doc/manual'
make[2]: Leaving directory '/«PKGBUILDDIR»/doc'
make[2]: Entering directory '/«PKGBUILDDIR»/etc'
make[2]: Leaving directory '/«PKGBUILDDIR»/etc'
make[2]: Entering directory '/«PKGBUILDDIR»/share'
make[2]: Leaving directory '/«PKGBUILDDIR»/share'
make[2]: Entering directory '/«PKGBUILDDIR»/src'
make[3]: Entering directory '/«PKGBUILDDIR»/src/scripts'
make[4]: Entering directory '/«PKGBUILDDIR»/src/scripts'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/scripts'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/scripts'
make[3]: Entering directory '/«PKGBUILDDIR»/src/include'
make[4]: Entering directory '/«PKGBUILDDIR»/src/include/R_ext'
make[4]: Nothing to be done for 'R'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/include/R_ext'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/include'
make[3]: Entering directory '/«PKGBUILDDIR»/src/extra'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/tre'
make[5]: Entering directory '/«PKGBUILDDIR»/src/extra/tre'
make[5]: 'Makedeps' is up to date.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre'
make[5]: Entering directory '/«PKGBUILDDIR»/src/extra/tre'
make[5]: 'libtre.a' is up to date.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/extra'
make[3]: Entering directory '/«PKGBUILDDIR»/src/appl'
make[4]: Entering directory '/«PKGBUILDDIR»/src/appl'
make[4]: 'libappl.a' is up to date.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/appl'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/appl'
make[3]: Entering directory '/«PKGBUILDDIR»/src/nmath'
make[4]: Entering directory '/«PKGBUILDDIR»/src/nmath'
make[4]: 'libnmath.a' is up to date.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/nmath'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/nmath'
make[3]: Entering directory '/«PKGBUILDDIR»/src/unix'
make[4]: Entering directory '/«PKGBUILDDIR»/src/unix'
make[4]: 'libunix.a' is up to date.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/unix'
make[4]: Entering directory '/«PKGBUILDDIR»/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H    -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -Wl,-Bsymbolic-functions -Wl,-z,relro -DR_HOME='"/«PKGBUILDDIR»"' \
  -o Rscript ./Rscript.c
make[4]: Leaving directory '/«PKGBUILDDIR»/src/unix'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/unix'
make[3]: Entering directory '/«PKGBUILDDIR»/src/main'
make[4]: Entering directory '/«PKGBUILDDIR»/src/main'
make[5]: Entering directory '/«PKGBUILDDIR»/src/main'
/«PKGBUILDDIR»/lib/libR.so is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[4]: Entering directory '/«PKGBUILDDIR»/src/main'
make[5]: Entering directory '/«PKGBUILDDIR»/src/main'
/«PKGBUILDDIR»/bin/exec/R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[3]: Entering directory '/«PKGBUILDDIR»/src/modules'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/internet'
make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/internet'
make[5]: 'internet.so' is up to date.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/internet'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/internet'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/lapack'
make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/lapack'
make[5]: 'lapack.so' is up to date.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/lapack'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/lapack'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/X11'
make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/X11'
make[5]: 'R_X11.so' is up to date.
make[5]: 'R_de.so' is up to date.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11'
make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/X11'
/«PKGBUILDDIR»/modules/R_X11.so is unchanged
/«PKGBUILDDIR»/modules/R_de.so is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/modules'
make[3]: Entering directory '/«PKGBUILDDIR»/src/library'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/profile'
building system startup profile
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/profile'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/translations'
building package 'translations'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/translations'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/translations'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/translations'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/base'
building package 'base'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/base'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
building package 'tools'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/tools/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/tools/src'
../../../../library/tools/libs/tools.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/tools/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/tools/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
installing 'sysdata.rda'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/compiler'
building package 'compiler'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/compiler'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/compiler'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/compiler'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/compiler'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/compiler'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/tools'
make[4]: Nothing to be done for 'mklazycomp'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/tools'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/utils'
building package 'utils'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/utils'
all.R is unchanged
make[5]: Nothing to be done for 'iconvlist'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/utils'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/utils'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/utils/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/utils/src'
../../../../library/utils/libs/utils.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/utils/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/utils/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/utils'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/utils'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/utils'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/utils'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices'
building package 'grDevices'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src'
../../../../library/grDevices/libs/grDevices.so is unchanged
make[8]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[9]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[10]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[10]: 'cairo.so' is up to date.
make[10]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[9]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[8]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo'
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/graphics'
building package 'graphics'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/graphics'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/graphics'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/graphics/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/graphics/src'
../../../../library/graphics/libs/graphics.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/graphics'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/stats'
building package 'stats'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/stats/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/stats/src'
../../../../library/stats/libs/stats.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/stats/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/stats/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/stats'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/datasets'
building package 'datasets'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/datasets'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/datasets'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/datasets'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
building package 'methods'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/methods/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/methods/src'
../../../../library/methods/libs/methods.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/methods/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/methods/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/methods'
make[5]: Nothing to be done for 'RfilesLazy'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/methods'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
building package 'grid'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/grid/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/grid/src'
../../../../library/grid/libs/grid.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/grid/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/grid/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grid'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/grid'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
building package 'splines'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/splines/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/splines/src'
../../../../library/splines/libs/splines.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/splines/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/splines/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/splines'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/splines'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/stats4'
building package 'stats4'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats4'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats4'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk'
building package 'tcltk'
all.R is unchanged
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk/src'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk/src'
../../../../library/tcltk/libs/tcltk.so is unchanged
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk/src'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
building package 'parallel'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
all.R is unchanged
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
make[6]: Entering directory '/«PKGBUILDDIR»/src/library/parallel/src'
make[7]: Entering directory '/«PKGBUILDDIR»/src/library/parallel/src'
../../../../library/parallel/libs/parallel.so is unchanged
make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel/src'
make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel/src'
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel'
make[5]: Nothing to be done for 'mklazycomp'.
make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel'
make[4]: Entering directory '/«PKGBUILDDIR»/src/library/base'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/base'
installing parsed NAMESPACE files
make[3]: Leaving directory '/«PKGBUILDDIR»/src/library'
make[2]: Leaving directory '/«PKGBUILDDIR»/src'
make[2]: Entering directory '/«PKGBUILDDIR»/tests'
make[2]: Nothing to be done for 'R'.
make[2]: Leaving directory '/«PKGBUILDDIR»/tests'
make[2]: Entering directory '/«PKGBUILDDIR»'
configuring Java ...
Java interpreter : /usr/lib/jvm/default-java/jre/bin/java
Java version     : 1.7.0_91
Java home path   : /usr/lib/jvm/default-java
Java compiler    : /usr/lib/jvm/default-java/bin/javac
Java headers gen.: /usr/lib/jvm/default-java/bin/javah
Java archive tool: /usr/lib/jvm/default-java/bin/jar

trying to compile and link a JNI program 
detected JNI cpp flags    : -I$(JAVA_HOME)/include
detected JNI linker flags : -L$(JAVA_HOME)/jre/lib/i386/client -ljvm
make[3]: Entering directory '/tmp/Rjavareconf.S2IBSc'
gcc -std=gnu99 -I/«PKGBUILDDIR»/include -DNDEBUG -I/usr/lib/jvm/default-java/include     -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -c conftest.c -o conftest.o
gcc -std=gnu99 -shared -L/«PKGBUILDDIR»/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o conftest.so conftest.o -L/usr/lib/jvm/default-java/jre/lib/i386/client -ljvm -L/«PKGBUILDDIR»/lib -lR
make[3]: Leaving directory '/tmp/Rjavareconf.S2IBSc'


JAVA_HOME        : /usr/lib/jvm/default-java
Java library path: $(JAVA_HOME)/jre/lib/i386/client
JNI cpp flags    : -I$(JAVA_HOME)/include
JNI linker flags : -L$(JAVA_HOME)/jre/lib/i386/client -ljvm
Updating Java configuration in /«PKGBUILDDIR»
Done.

make[2]: Leaving directory '/«PKGBUILDDIR»'
make[1]: Leaving directory '/«PKGBUILDDIR»'
touch make-arch-stamp
*** check ***
xvfb-run make check-all
make[1]: Entering directory '/«PKGBUILDDIR»'
make[2]: Entering directory '/«PKGBUILDDIR»/tests'
make[3]: Entering directory '/«PKGBUILDDIR»/tests'
make[4]: Entering directory '/«PKGBUILDDIR»/tests/Examples'
Testing examples for package 'base'
Testing examples for package 'tools'
  comparing 'tools-Ex.Rout' to 'tools-Ex.Rout.save' ... OK
Testing examples for package 'utils'
Testing examples for package 'grDevices'
  comparing 'grDevices-Ex.Rout' to 'grDevices-Ex.Rout.save' ...
252c252
< > #   logical vectors are black and white ...
---
> > #   locigal vectors are black and white ...
Testing examples for package 'graphics'
  comparing 'graphics-Ex.Rout' to 'graphics-Ex.Rout.save' ... OK
Testing examples for package 'stats'
  comparing 'stats-Ex.Rout' to 'stats-Ex.Rout.save' ... OK
Testing examples for package 'datasets'
  comparing 'datasets-Ex.Rout' to 'datasets-Ex.Rout.save' ... OK
Testing examples for package 'methods'
Testing examples for package 'grid'
  comparing 'grid-Ex.Rout' to 'grid-Ex.Rout.save' ... OK
Testing examples for package 'splines'
  comparing 'splines-Ex.Rout' to 'splines-Ex.Rout.save' ... OK
Testing examples for package 'stats4'
  comparing 'stats4-Ex.Rout' to 'stats4-Ex.Rout.save' ... OK
Testing examples for package 'tcltk'
Testing examples for package 'compiler'
Testing examples for package 'parallel'
make[4]: Leaving directory '/«PKGBUILDDIR»/tests/Examples'
make[3]: Leaving directory '/«PKGBUILDDIR»/tests'
make[3]: Entering directory '/«PKGBUILDDIR»/tests'
running strict specific tests
make[4]: Entering directory '/«PKGBUILDDIR»/tests'
running code in 'eval-etc.R' ... OK
  comparing 'eval-etc.Rout' to './eval-etc.Rout.save' ... OK
running code in 'simple-true.R' ... OK
  comparing 'simple-true.Rout' to './simple-true.Rout.save' ... OK
running code in 'arith-true.R' ... OK
  comparing 'arith-true.Rout' to './arith-true.Rout.save' ... OK
running code in 'arith.R' ... OK
  comparing 'arith.Rout' to './arith.Rout.save' ... OK
running code in 'lm-tests.R' ... OK
  comparing 'lm-tests.Rout' to './lm-tests.Rout.save' ... OK
running code in 'ok-errors.R' ... OK
  comparing 'ok-errors.Rout' to './ok-errors.Rout.save' ... OK
running code in 'method-dispatch.R' ... OK
  comparing 'method-dispatch.Rout' to './method-dispatch.Rout.save' ... OK
running code in 'array-subset.R' ... OK
  comparing 'array-subset.Rout' to './array-subset.Rout.save' ... OK
running code in 'any-all.R' ... OK
  comparing 'any-all.Rout' to './any-all.Rout.save' ... OK
running code in 'd-p-q-r-tests.R' ... OK
  comparing 'd-p-q-r-tests.Rout' to './d-p-q-r-tests.Rout.save' ... OK
make[4]: Leaving directory '/«PKGBUILDDIR»/tests'
running sloppy specific tests
make[4]: Entering directory '/«PKGBUILDDIR»/tests'
running code in 'complex.R' ... OK
  comparing 'complex.Rout' to './complex.Rout.save' ... OK
running code in 'print-tests.R' ... OK
  comparing 'print-tests.Rout' to './print-tests.Rout.save' ... OK
running code in 'lapack.R' ... OK
  comparing 'lapack.Rout' to './lapack.Rout.save' ...405,409c405,409
< [1,] -0.4023  0.2877 -0.3638  0.5  0.6108
< [2,] -0.5338 -0.3474 -0.5742 -0.5 -0.1207
< [3,] -0.4177 -0.5380  0.6384  0.0  0.3585
< [4,] -0.4959  0.0733  0.1273  0.5 -0.6946
< [5,] -0.3644  0.7084  0.3378 -0.5  0.0369
---
> [1,] -0.4023  0.2877  0.3638  0.5  0.6108
> [2,] -0.5338 -0.3474  0.5742 -0.5 -0.1207
> [3,] -0.4177 -0.5380 -0.6384  0.0  0.3585
> [4,] -0.4959  0.0733 -0.1273  0.5 -0.6946
> [5,] -0.3644  0.7084 -0.3378 -0.5  0.0369
 OK
running code in 'datasets.R' ... OK
  comparing 'datasets.Rout' to './datasets.Rout.save' ... OK
running code in 'datetime.R' ... OK
  comparing 'datetime.Rout' to './datetime.Rout.save' ... OK
running code in 'iec60559.R' ... OK
  comparing 'iec60559.Rout' to './iec60559.Rout.save' ... OK
make[4]: Leaving directory '/«PKGBUILDDIR»/tests'
make[3]: Leaving directory '/«PKGBUILDDIR»/tests'
make[3]: Entering directory '/«PKGBUILDDIR»/tests'
running regression tests ...
make[4]: Entering directory '/«PKGBUILDDIR»/tests'
running code in 'reg-tests-1a.R' ... OK
running code in 'reg-tests-1b.R' ... OK
running code in 'reg-tests-1c.R' ... OK
running code in 'reg-tests-2.R' ... OK
  comparing 'reg-tests-2.Rout' to './reg-tests-2.Rout.save' ... OK
running code in 'reg-examples1.R' ... OK
running code in 'reg-examples2.R' ... OK
running code in 'reg-packages.R' ... OK
running code in 'p-qbeta-strict-tst.R' ... OK
running code in 'reg-IO.R' ... OK
  comparing 'reg-IO.Rout' to './reg-IO.Rout.save' ... OK
running code in 'reg-IO2.R' ... OK
  comparing 'reg-IO2.Rout' to './reg-IO2.Rout.save' ... OK
running code in 'reg-plot.R' ... OK
  comparing 'reg-plot.pdf' to './reg-plot.pdf.save' ... OK
running code in 'reg-S4.R' ... OK
  comparing 'reg-S4.Rout' to './reg-S4.Rout.save' ... OK
running code in 'reg-BLAS.R' ... OK
make[4]: Leaving directory '/«PKGBUILDDIR»/tests'
make[4]: Entering directory '/«PKGBUILDDIR»/tests'
running tests of plotting Latin-1
  expect failure or some differences if not in a Latin-1 or UTF-8 locale
running code in 'reg-plot-latin1.R' ... FAILED
make[4]: Leaving directory '/«PKGBUILDDIR»/tests'
make[3]: Leaving directory '/«PKGBUILDDIR»/tests'
make[3]: Entering directory '/«PKGBUILDDIR»/tests'
running tests of Internet functions
  expect some differences
make[4]: Entering directory '/«PKGBUILDDIR»/tests'
running code in 'internet.R' ... OK
  comparing 'internet.Rout' to './internet.Rout.save' ...14,16c14,253
< Warning message:
< In nsl("cran.r-project.org") :
<   nsl() was unable to resolve host 'cran.r-project.org'
---
> > 
> > # test do_download.
> > nrow(available.packages(contrib.url("http://cran.r-project.org")))
> [1] 7588
> > 
> > # test url connections on http
> > zz <- url("http://cran.r-project.org/")
> > readLines(zz)
>  [1] "<!DOCTYPE HTML PUBLIC \"-//W3C//DTD HTML 4.01 Frameset//EN\" \"http://www.w3.org/TR/html4/frameset.dtd\">"
>  [2] "<html>"                                                                                                   
>  [3] "<head>"                                                                                                   
>  [4] "<title>The Comprehensive R Archive Network</title>"                                                       
>  [5] "<META HTTP-EQUIV=\"content-type\" CONTENT=\"text/html; charset=utf-8\">"                                  
>  [6] "<link rel=\"icon\" href=\"favicon.ico\" type=\"image/x-icon\">"                                           
>  [7] "<link rel=\"shortcut icon\" href=\"favicon.ico\" type=\"image/x-icon\">"                                  
>  [8] "<link rel=\"stylesheet\" type=\"text/css\" href=\"R.css\">"                                               
>  [9] "</head>"                                                                                                  
> [10] ""                                                                                                         
> [11] "<FRAMESET cols=\"1*, 4*\" border=0>"                                                                      
> [12] "<FRAMESET rows=\"120, 1*\">"                                                                              
> [13] "<FRAME src=\"logo.html\" name=\"logo\" frameborder=0>"                                                    
> [14] "<FRAME src=\"navbar.html\" name=\"contents\" frameborder=0>"                                              
> [15] "</FRAMESET>"                                                                                              
> [16] "<FRAME src=\"banner.shtml\" name=\"banner\" frameborder=0>"                                               
> [17] "<noframes>"                                                                                               
> [18] "<h1>The Comprehensive R Archive Network</h1>"                                                             
> [19] ""                                                                                                         
> [20] "Your browser seems not to support frames,"                                                                
> [21] "here is the <A href=\"navbar.html\">contents page</A> of CRAN."                                           
> [22] "</noframes>"                                                                                              
> [23] "</FRAMESET>"                                                                                              
> > close(zz)
> > 
> > # and via read.table, test http and ftp.
> > 
> > read.table("http://www.stats.ox.ac.uk/pub/datasets/csb/ch11b.dat")
>      V1  V2   V3    V4 V5
> 1     1 307  930 36.58  0
> 2     2 307  940 36.73  0
> 3     3 307  950 36.93  0
> 4     4 307 1000 37.15  0
> 5     5 307 1010 37.23  0
> 6     6 307 1020 37.24  0
> 7     7 307 1030 37.24  0
> 8     8 307 1040 36.90  0
> 9     9 307 1050 36.95  0
> 10   10 307 1100 36.89  0
> 11   11 307 1110 36.95  0
> 12   12 307 1120 37.00  0
> 13   13 307 1130 36.90  0
> 14   14 307 1140 36.99  0
> 15   15 307 1150 36.99  0
> 16   16 307 1200 37.01  0
> 17   17 307 1210 37.04  0
> 18   18 307 1220 37.04  0
> 19   19 307 1230 37.14  0
> 20   20 307 1240 37.07  0
> 21   21 307 1250 36.98  0
> 22   22 307 1300 37.01  0
> 23   23 307 1310 36.97  0
> 24   24 307 1320 36.97  0
> 25   25 307 1330 37.12  0
> 26   26 307 1340 37.13  0
> 27   27 307 1350 37.14  0
> 28   28 307 1400 37.15  0
> 29   29 307 1410 37.17  0
> 30   30 307 1420 37.12  0
> 31   31 307 1430 37.12  0
> 32   32 307 1440 37.17  0
> 33   33 307 1450 37.28  0
> 34   34 307 1500 37.28  0
> 35   35 307 1510 37.44  0
> 36   36 307 1520 37.51  0
> 37   37 307 1530 37.64  0
> 38   38 307 1540 37.51  0
> 39   39 307 1550 37.98  1
> 40   40 307 1600 38.02  1
> 41   41 307 1610 38.00  1
> 42   42 307 1620 38.24  1
> 43   43 307 1630 38.10  1
> 44   44 307 1640 38.24  1
> 45   45 307 1650 38.11  1
> 46   46 307 1700 38.02  1
> 47   47 307 1710 38.11  1
> 48   48 307 1720 38.01  1
> 49   49 307 1730 37.91  1
> 50   50 307 1740 37.96  1
> 51   51 307 1750 38.03  1
> 52   52 307 1800 38.17  1
> 53   53 307 1810 38.19  1
> 54   54 307 1820 38.18  1
> 55   55 307 1830 38.15  1
> 56   56 307 1840 38.04  1
> 57   57 307 1850 37.96  1
> 58   58 307 1900 37.84  1
> 59   59 307 1910 37.83  1
> 60   60 307 1920 37.84  1
> 61   61 307 1930 37.74  1
> 62   62 307 1940 37.76  1
> 63   63 307 1950 37.76  1
> 64   64 307 2000 37.64  1
> 65   65 307 2010 37.63  1
> 66   66 307 2020 38.06  1
> 67   67 307 2030 38.19  1
> 68   68 307 2040 38.35  1
> 69   69 307 2050 38.25  1
> 70   70 307 2100 37.86  1
> 71   71 307 2110 37.95  1
> 72   72 307 2120 37.95  1
> 73   73 307 2130 37.76  1
> 74   74 307 2140 37.60  1
> 75   75 307 2150 37.89  1
> 76   76 307 2200 37.86  1
> 77   77 307 2210 37.71  1
> 78   78 307 2220 37.78  1
> 79   79 307 2230 37.82  1
> 80   80 307 2240 37.76  1
> 81   81 307 2250 37.81  1
> 82   82 307 2300 37.84  1
> 83   83 307 2310 38.01  1
> 84   84 307 2320 38.10  1
> 85   85 307 2330 38.15  1
> 86   86 307 2340 37.92  1
> 87   87 307 2350 37.64  1
> 88   88 308    0 37.70  1
> 89   89 308   10 37.46  1
> 90   90 308   20 37.41  1
> 91   91 308   30 37.46  1
> 92   92 308   40 37.56  1
> 93   93 308   50 37.55  1
> 94   94 308  100 37.75  1
> 95   95 308  110 37.76  1
> 96   96 308  120 37.73  1
> 97   97 308  130 37.77  1
> 98   98 308  140 38.01  1
> 99   99 308  150 38.04  1
> 100 100 308  200 38.07  1
> > read.table("ftp://ftp.stats.ox.ac.uk/pub/datasets/csb/ch11b.dat")
>      V1  V2   V3    V4 V5
> 1     1 307  930 36.58  0
> 2     2 307  940 36.73  0
> 3     3 307  950 36.93  0
> 4     4 307 1000 37.15  0
> 5     5 307 1010 37.23  0
> 6     6 307 1020 37.24  0
> 7     7 307 1030 37.24  0
> 8     8 307 1040 36.90  0
> 9     9 307 1050 36.95  0
> 10   10 307 1100 36.89  0
> 11   11 307 1110 36.95  0
> 12   12 307 1120 37.00  0
> 13   13 307 1130 36.90  0
> 14   14 307 1140 36.99  0
> 15   15 307 1150 36.99  0
> 16   16 307 1200 37.01  0
> 17   17 307 1210 37.04  0
> 18   18 307 1220 37.04  0
> 19   19 307 1230 37.14  0
> 20   20 307 1240 37.07  0
> 21   21 307 1250 36.98  0
> 22   22 307 1300 37.01  0
> 23   23 307 1310 36.97  0
> 24   24 307 1320 36.97  0
> 25   25 307 1330 37.12  0
> 26   26 307 1340 37.13  0
> 27   27 307 1350 37.14  0
> 28   28 307 1400 37.15  0
> 29   29 307 1410 37.17  0
> 30   30 307 1420 37.12  0
> 31   31 307 1430 37.12  0
> 32   32 307 1440 37.17  0
> 33   33 307 1450 37.28  0
> 34   34 307 1500 37.28  0
> 35   35 307 1510 37.44  0
> 36   36 307 1520 37.51  0
> 37   37 307 1530 37.64  0
> 38   38 307 1540 37.51  0
> 39   39 307 1550 37.98  1
> 40   40 307 1600 38.02  1
> 41   41 307 1610 38.00  1
> 42   42 307 1620 38.24  1
> 43   43 307 1630 38.10  1
> 44   44 307 1640 38.24  1
> 45   45 307 1650 38.11  1
> 46   46 307 1700 38.02  1
> 47   47 307 1710 38.11  1
> 48   48 307 1720 38.01  1
> 49   49 307 1730 37.91  1
> 50   50 307 1740 37.96  1
> 51   51 307 1750 38.03  1
> 52   52 307 1800 38.17  1
> 53   53 307 1810 38.19  1
> 54   54 307 1820 38.18  1
> 55   55 307 1830 38.15  1
> 56   56 307 1840 38.04  1
> 57   57 307 1850 37.96  1
> 58   58 307 1900 37.84  1
> 59   59 307 1910 37.83  1
> 60   60 307 1920 37.84  1
> 61   61 307 1930 37.74  1
> 62   62 307 1940 37.76  1
> 63   63 307 1950 37.76  1
> 64   64 307 2000 37.64  1
> 65   65 307 2010 37.63  1
> 66   66 307 2020 38.06  1
> 67   67 307 2030 38.19  1
> 68   68 307 2040 38.35  1
> 69   69 307 2050 38.25  1
> 70   70 307 2100 37.86  1
> 71   71 307 2110 37.95  1
> 72   72 307 2120 37.95  1
> 73   73 307 2130 37.76  1
> 74   74 307 2140 37.60  1
> 75   75 307 2150 37.89  1
> 76   76 307 2200 37.86  1
> 77   77 307 2210 37.71  1
> 78   78 307 2220 37.78  1
> 79   79 307 2230 37.82  1
> 80   80 307 2240 37.76  1
> 81   81 307 2250 37.81  1
> 82   82 307 2300 37.84  1
> 83   83 307 2310 38.01  1
> 84   84 307 2320 38.10  1
> 85   85 307 2330 38.15  1
> 86   86 307 2340 37.92  1
> 87   87 307 2350 37.64  1
> 88   88 308    0 37.70  1
> 89   89 308   10 37.46  1
> 90   90 308   20 37.41  1
> 91   91 308   30 37.46  1
> 92   92 308   40 37.56  1
> 93   93 308   50 37.55  1
> 94   94 308  100 37.75  1
> 95   95 308  110 37.76  1
> 96   96 308  120 37.73  1
> 97   97 308  130 37.77  1
> 98   98 308  140 38.01  1
> 99   99 308  150 38.04  1
> 100 100 308  200 38.07  1
> > 
 OK
make[4]: Leaving directory '/«PKGBUILDDIR»/tests'
make[3]: Leaving directory '/«PKGBUILDDIR»/tests'
make[3]: Entering directory '/«PKGBUILDDIR»/tests'
running tests of date-time printing
  expect platform-specific differences
make[4]: Entering directory '/«PKGBUILDDIR»/tests'
running code in 'datetime2.R' ... OK
  comparing 'datetime2.Rout' to './datetime2.Rout.save' ...10,11c10,11
<  [1] "1890-01-10 13:00:00 CET" "1891-01-10 13:00:00 CET"
<  [3] "1892-01-10 13:00:00 CET" "1893-01-10 13:00:00 CET"
---
>  [1] "1890-01-10 12:49:56 RMT" "1891-01-10 12:49:56 RMT"
>  [3] "1892-01-10 12:49:56 RMT" "1893-01-10 12:49:56 RMT"
24c24
<  [1] "1890-01-10 12:09:21 PMT" "1891-01-10 12:09:21 PMT"
---
>  [1] "1890-01-10 12:09:21 LMT" "1891-01-10 12:09:21 LMT"
37c37
<  [1] "1890-01-10 12:09:21 PMT" "1891-01-10 12:09:21 PMT"
---
>  [1] "1890-01-10 12:09:21 LMT" "1891-01-10 12:09:21 LMT"
68c68
<  [1] "1890-01-10 12:09:21 PMT"  "1895-01-10 12:09:21 PMT" 
---
>  [1] "1890-01-10 12:09:21 LMT"  "1895-01-10 12:09:21 PMT" 
78c78
< [1] "1890-01-10 12:09:21 PMT"
---
> [1] "1890-01-10 12:09:21 LMT"
 OK
make[4]: Leaving directory '/«PKGBUILDDIR»/tests'
make[3]: Leaving directory '/«PKGBUILDDIR»/tests'
make[3]: Entering directory '/«PKGBUILDDIR»/tests'
running tests of documentation examples
make[4]: Entering directory '/«PKGBUILDDIR»/tests'
running code in 'R-intro.R' ... OK
  comparing 'R-intro.Rout' to './R-intro.Rout.save' ... OK
make[4]: Leaving directory '/«PKGBUILDDIR»/tests'
make[4]: Entering directory '/«PKGBUILDDIR»/tests'
gcc -std=gnu99 -I/«PKGBUILDDIR»/include -DNDEBUG      -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -c R-exts.c -o R-exts.o
gcc -std=gnu99 -shared -L/«PKGBUILDDIR»/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o R-exts.so R-exts.o -L/«PKGBUILDDIR»/lib -lR
make[4]: Leaving directory '/«PKGBUILDDIR»/tests'
make[4]: Entering directory '/«PKGBUILDDIR»/tests'
running code in 'R-exts.R' ... OK
make[4]: Leaving directory '/«PKGBUILDDIR»/tests'
make[3]: Leaving directory '/«PKGBUILDDIR»/tests'
make[3]: Entering directory '/«PKGBUILDDIR»/tests'
running tests of consistency of as/is.*
make[4]: Entering directory '/«PKGBUILDDIR»/tests'
creating 'isas-tests.R'
running code in 'isas-tests.R' ... OK
  comparing 'isas-tests.Rout' to './isas-tests.Rout.save' ... OK
rm isas-tests.R
make[4]: Leaving directory '/«PKGBUILDDIR»/tests'
make[3]: Leaving directory '/«PKGBUILDDIR»/tests'
make[3]: Entering directory '/«PKGBUILDDIR»/tests'
running tests of random deviate generation
make[4]: Entering directory '/«PKGBUILDDIR»/tests'
running code in 'p-r-random-tests.R' ... OK
  comparing 'p-r-random-tests.Rout' to './p-r-random-tests.Rout.save' ... OK
make[4]: Leaving directory '/«PKGBUILDDIR»/tests'
make[3]: Leaving directory '/«PKGBUILDDIR»/tests'
make[3]: Entering directory '/«PKGBUILDDIR»/tests'
running demos from base and stats
make[4]: Entering directory '/«PKGBUILDDIR»/tests'
running code in 'demos.R' ... OK
  comparing 'demos.Rout' to './demos.Rout.save' ... OK
running code in 'demos2.R' ... OK
make[4]: Leaving directory '/«PKGBUILDDIR»/tests'
make[3]: Leaving directory '/«PKGBUILDDIR»/tests'
make[3]: Entering directory '/«PKGBUILDDIR»/tests'
running tests of primitives
make[4]: Entering directory '/«PKGBUILDDIR»/tests'
running code in 'primitives.R' ... OK
make[4]: Leaving directory '/«PKGBUILDDIR»/tests'
make[3]: Leaving directory '/«PKGBUILDDIR»/tests'
make[3]: Entering directory '/«PKGBUILDDIR»/tests'
running regexp regression tests
make[3]: Leaving directory '/«PKGBUILDDIR»/tests'
make[3]: Entering directory '/«PKGBUILDDIR»/tests'
running more Internet and socket tests
make[4]: Entering directory '/«PKGBUILDDIR»/tests'
running code in 'internet2.R' ... OK
running code in 'libcurl.R' ... OK
make[4]: Leaving directory '/«PKGBUILDDIR»/tests'
make[3]: Leaving directory '/«PKGBUILDDIR»/tests'
make[3]: Entering directory '/«PKGBUILDDIR»/tests'
running tests to possibly trigger segfaults
make[4]: Entering directory '/«PKGBUILDDIR»/tests'
creating 'no-segfault.R'
running code in 'no-segfault.R' ... OK
make[4]: Leaving directory '/«PKGBUILDDIR»/tests'
make[3]: Leaving directory '/«PKGBUILDDIR»/tests'
make[3]: Entering directory '/«PKGBUILDDIR»/tests'
testing building standalone Rmath
make[4]: Entering directory '/«PKGBUILDDIR»/src/nmath/standalone'
check output can be found in src/nmath/standalone/check.log
make[4]: Leaving directory '/«PKGBUILDDIR»/src/nmath/standalone'
make[3]: Leaving directory '/«PKGBUILDDIR»/tests'
make[3]: Entering directory '/«PKGBUILDDIR»/tests'
make[4]: Entering directory '/«PKGBUILDDIR»/tests'
checking package 'base'
* using log directory '/«PKGBUILDDIR»/tests/base.Rcheck'
* using R version 3.2.3 (2015-12-10)
* using platform: i686-pc-linux-gnu (32-bit)
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'base' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Unknown packages 'date', 'chron', 'nnet', 'survival' in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking examples ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING
See
  '/«PKGBUILDDIR»/tests/base.Rcheck/00check.log'
for details.


checking package 'tools'
* using log directory '/«PKGBUILDDIR»/tests/tools.Rcheck'
* using R version 3.2.3 (2015-12-10)
* using platform: i686-pc-linux-gnu (32-bit)
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'tools' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking R/sysdata.rda ... OK
* checking compiled code ... OK
* checking examples ... SKIPPED
* checking tests ...
  Running 'undoc.R'
 OK
* checking PDF version of manual ... OK
* DONE

Status: OK

checking package 'utils'
* using log directory '/«PKGBUILDDIR»/tests/utils.Rcheck'
* using R version 3.2.3 (2015-12-10)
* using platform: i686-pc-linux-gnu (32-bit)
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'utils' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Unknown package 'MASS' in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking compiled code ... OK
* checking files in 'vignettes' ... OK
* checking examples ... SKIPPED
* checking tests ...
  Running 'Sweave-tst.R'
  Running 'completion.R'
 OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ...
   'Sweave.Rnw' ... OK
 OK
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING
See
  '/«PKGBUILDDIR»/tests/utils.Rcheck/00check.log'
for details.


checking package 'grDevices'
* using log directory '/«PKGBUILDDIR»/tests/grDevices.Rcheck'
* using R version 3.2.3 (2015-12-10)
* using platform: i686-pc-linux-gnu (32-bit)
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'grDevices' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Unknown packages 'KernSmooth', 'MASS' in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking compiled code ... OK
* checking examples ... SKIPPED
* checking tests ...
  Running 'ps-tests.R'
  Comparing 'ps-tests.Rout' to 'ps-tests.Rout.save' ... OK
  Running 'xfig-tests.R'
  Comparing 'xfig-tests.Rout' to 'xfig-tests.Rout.save' ... OK
 OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING
See
  '/«PKGBUILDDIR»/tests/grDevices.Rcheck/00check.log'
for details.


checking package 'graphics'
* using log directory '/«PKGBUILDDIR»/tests/graphics.Rcheck'
* using R version 3.2.3 (2015-12-10)
* using platform: i686-pc-linux-gnu (32-bit)
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'graphics' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Unknown packages 'vcd', 'lattice', 'MASS', 'KernSmooth' in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking compiled code ... OK
* checking examples ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING
See
  '/«PKGBUILDDIR»/tests/graphics.Rcheck/00check.log'
for details.


checking package 'stats'
* using log directory '/«PKGBUILDDIR»/tests/stats.Rcheck'
* using R version 3.2.3 (2015-12-10)
* using platform: i686-pc-linux-gnu (32-bit)
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'stats' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Unknown packages 'multcomp', 'coin', 'nlme', 'cluster', 'MASS', 'rpart', 'Matrix', 'pcaPP', 'Kendall', 'SuppDists', 'pspearman', 'survival' in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking compiled code ... OK
* checking examples ... SKIPPED
* checking tests ...
  Running 'NLSstClosest.R'
  Running 'arimaML.R'
  Running 'cmdscale.R'
  Running 'drop1-polr.R'
  Running 'glm.R'
  Comparing 'glm.Rout' to 'glm.Rout.save' ... OK
  Running 'ig_glm.R'
  Running 'ks-test.R'
  Comparing 'ks-test.Rout' to 'ks-test.Rout.save' ... OK
  Running 'nafns.R'
  Running 'nls.R'
  Comparing 'nls.Rout' to 'nls.Rout.save' ...79a80,84
> Waiting for profiling to be done...
>      2.5%    97.5%
> a 1.00875 1.037847
> b 0.84138 0.914645
> c      NA 0.042807
141c146
<   2: 0.00060639084: 0.00517051 0.999153
---
>   2: 0.00060639084: 0.00517053 0.999153
150c155
< b  0.99915    0.00119  841.37   <2e-16 ***
---
> b  0.99915    0.00119  841.38   <2e-16 ***
331a337,345
> Waiting for profiling to be done...
>         2.5%  97.5%
> Asym 2.14936 2.5724
> xmid 1.28535 1.6966
> scal 0.97526 1.1068
> Waiting for profiling to be done...
>        2.5%  97.5%
> xmid 1.2866 1.6949
> scal 0.9757 1.1063
360a375,377
> Waiting for profiling to be done...
>    2.5%   97.5% 
> 0.68704 0.70281 
368a386,388
> Waiting for profiling to be done...
>    2.5%   97.5% 
> 0.68704 0.70281 
374a395,398
> Waiting for profiling to be done...
>      2.5%   97.5%
> a 0.49494 0.50893
> b 0.70019 0.74767
382a407,410
> Waiting for profiling to be done...
>      2.5%   97.5%
> a 0.49494 0.50893
> b 0.70019 0.74767
388a417,421
> Waiting for profiling to be done...
>          2.5%   97.5%
> a     0.35006 0.66057
> b     0.45107 0.91473
> logc -0.64627 0.40946
396a430,434
> Waiting for profiling to be done...
>          2.5%   97.5%
> a     0.35006 0.66057
> b     0.45107 0.91473
> logc -0.64627 0.40946
403a442,446
>    2.5%   97.5% 
> 0.70019 0.74767 
>          2.5%   97.5%
> b     0.45105 0.91471
> logc -0.64625 0.40933
473a517,519
>   2.5% 97.5%
> a 0.96  5.20
> b   NA  1.07
524a571,574
> Waiting for profiling to be done...
>    2.5% 97.5%
> a 0.907    NA
> b    NA 0.611
  Running 'offsets.R'
  Running 'ppr.R'
  Running 'simulate.R'
  Comparing 'simulate.Rout' to 'simulate.Rout.save' ...9,14c9,390
< > proc.time()
<    user  system elapsed 
<   0.212   0.036   0.308 
< Warning message:
< In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
<   there is no package called 'MASS'
---
> > 
> > ## cases should be named
> > fit1 <- lm(time ~ dist, data = hills)
> > set.seed(1)
> > simulate(fit1, nsim = 3)
>                     sim_1    sim_2    sim_3
> Greenmantle        3.4841   7.7039  25.4746
> Carnethy          48.8068  37.2737  30.9745
> Craig Dunain      28.4665  43.9584  57.3295
> Ben Rha           89.4727  79.5895  38.9971
> Ben Lomond        68.3785  77.0326  36.7858
> Goatfell          45.4299  58.5197  67.6189
> Bens of Jura     138.1736 123.3906 119.6004
> Cairnpapple       59.8758  59.0504  45.1641
> Scolty            48.3017  47.9202  38.2951
> Traprain          39.0478  31.3974  33.3777
> Lairig Ghru      258.5807 214.2935 217.0639
> Dollar            44.5912  44.0871  34.1140
> Lomonds           61.9013  89.6352  97.8082
> Cairn Table        0.9461  42.9001  14.7382
> Eildon Two        55.0951  50.2295  44.4990
> Cairngorm         77.5672  86.4083  85.1081
> Seven Hills      111.4626  99.5722 133.0006
> Knock Hill        38.9856  26.9579  14.0804
> Black Hill        49.0344  10.1091  40.0303
> Creag Beag        52.8285  69.5738  46.3069
> Kildcon Hill      38.4895  59.6709   9.3243
> Meall Ant-Suidhe  39.9240  16.9877  48.4197
> Half Ben Nevis    46.6300  24.3056  68.2987
> Cow Hill         -27.8787  23.1894  25.7935
> N Berwick Law     32.5197  17.4555  51.8170
> Creag Dubh        27.3610  76.4071  39.6261
> Burnswark         42.0330  44.3590  19.6667
> Largo Law          7.4616  50.5758  25.3716
> Criffel           39.7654  49.8660  24.8692
> Acmony            45.1519  21.9790  27.3645
> Ben Nevis        105.5773  82.2313  66.0840
> Knockfarrel       43.0908   9.1228  45.9825
> Two Breweries    152.8438 174.3537 126.9294
> Cockleroi         31.5726  35.7046  35.7999
> Moffat Chase     134.2882 205.1244 148.7057
> > 
> > ## and weights should be taken into account
> > fit2 <- lm(time ~ -1 + dist + climb, hills[-18, ], weight = 1/dist^2)
> > coef(summary(fit2))
>        Estimate Std. Error t value   Pr(>|t|)
> dist  4.8999847  0.4737032 10.3440 9.8468e-12
> climb 0.0084718  0.0016869  5.0221 1.8636e-05
> > set.seed(1)
> > ( ys <- simulate(fit2, nsim = 3) )
>                    sim_1   sim_2   sim_3
> Greenmantle       15.754  13.355  18.247
> Carnethy          51.988  47.396  67.247
> Craig Dunain      30.614  34.000  40.672
> Ben Rha           58.825  42.959  36.719
> Ben Lomond        68.579  76.460  71.455
> Goatfell          55.088  71.287  53.926
> Bens of Jura     151.910 138.573 116.292
> Cairnpapple       41.841  34.234  38.413
> Scolty            34.958  35.733  28.443
> Traprain          32.564  39.177  34.915
> Lairig Ghru      209.113 130.333 157.652
> Dollar            43.936  36.921  37.675
> Lomonds           57.642  69.616  58.280
> Cairn Table       16.646  39.532  32.599
> Eildon Two        41.230  34.111  41.536
> Cairngorm         73.841  85.681  54.935
> Seven Hills       86.948  94.364  97.870
> Black Hill        35.952  27.000  32.437
> Creag Beag        37.808  34.432  39.509
> Kildcon Hill      19.520  12.910  16.075
> Meall Ant-Suidhe  33.970  36.271  31.514
> Half Ben Nevis    54.038  63.231  50.087
> Cow Hill          17.615  16.486  16.037
> N Berwick Law     12.152  15.778  24.416
> Creag Dubh        39.714  39.457  42.478
> Burnswark         35.747  35.141  41.549
> Largo Law         31.552  47.902  42.693
> Criffel           34.452  46.350  51.317
> Acmony            25.679  33.145  20.575
> Ben Nevis         91.620  86.634  78.946
> Knockfarrel       44.906  28.781  25.088
> Two Breweries    129.888 136.598 121.358
> Cockleroi         31.482  18.866  25.682
> Moffat Chase     138.983 177.836 141.436
> > for(i in seq_len(3))
> +     print(coef(summary(update(fit2, ys[, i] ~ .))))
>        Estimate Std. Error t value   Pr(>|t|)
> dist  4.8759333  0.4295826 11.3504 9.3646e-13
> climb 0.0091824  0.0015298  6.0023 1.0781e-06
>        Estimate Std. Error t value   Pr(>|t|)
> dist  4.6969341  0.4406227   10.66 4.6417e-12
> climb 0.0099795  0.0015691    6.36 3.8442e-07
>        Estimate Std. Error t value   Pr(>|t|)
> dist  4.8215499   0.420077 11.4778 7.0162e-13
> climb 0.0090388   0.001496  6.0422 9.6065e-07
> > 
> > ## Poisson fit
> > fit3 <- glm(Postwt ~ Prewt + Treat + offset(Prewt),
> +             family = gaussian, data = anorexia)
> > coef(summary(fit3))
>             Estimate Std. Error t value   Pr(>|t|)
> (Intercept) 49.77111   13.39096  3.7168 0.00041011
> Prewt       -0.56554    0.16118 -3.5087 0.00080343
> TreatCont   -4.09707    1.89349 -2.1638 0.03399931
> TreatFT      4.56306    2.13334  2.1389 0.03603508
> > set.seed(1)
> > simulate(fit3, nsim = 8)
>      sim_1   sim_2   sim_3   sim_4   sim_5   sim_6   sim_7  sim_8
> 1   76.364  84.997  72.948  78.581  83.762  62.645  70.046 87.655
> 2   85.796  77.997  79.276  75.769  91.529  93.684  84.340 95.638
> 3   79.726  76.809 100.122  90.039  82.835  81.123  89.696 75.979
> 4   88.956  79.858  77.946  77.512  80.451  74.824  76.441 76.082
> 5   81.905  76.512  70.629  67.511  81.309  78.424  85.830 87.696
> 6   78.312  84.045  72.589  84.052  74.084  88.309  83.858 76.262
> 7   87.004  84.121  86.744  79.204  96.013  88.336  79.083 65.958
> 8   83.454  74.188  78.173  75.923  79.240  82.265  82.812 71.771
> 9   84.710  76.723  78.472  72.621  86.034  76.696  77.664 73.942
> 10  77.605  78.792  73.251  92.318  86.401  70.223  92.105 80.067
> 11  89.938  87.609  69.008  77.078  79.035  76.676  79.261 76.571
> 12  86.931  73.579  76.708  73.007  82.077  86.150  90.162 85.826
> 13  76.661  85.140  87.974  82.372  87.232  75.252  82.427 78.048
> 14  64.151  81.929  75.270  81.442  72.297  79.125  58.615 82.216
> 15  84.154  83.722  66.643  69.424  90.060  68.155  66.771 73.749
> 16  78.944  77.135  92.302  59.098  76.581  79.200  76.298 87.563
> 17  82.577  85.272  85.657  78.221  94.233  83.589  84.343 77.545
> 18  89.624  84.902  81.372  87.019  93.590  82.020  66.690 85.066
> 19  87.943  78.426  89.599  81.795  82.791  81.068  88.923 76.038
> 20  84.445  88.729  86.486  79.615  84.259  92.607  76.083 81.752
> 21  89.233  90.918  78.499  86.734  75.671  88.142  77.567 82.487
> 22  87.800  87.229  97.737  74.063  84.597  90.098  71.487 70.588
> 23  80.777  91.330  78.478  87.911  87.540  73.815  70.112 79.251
> 24  65.463  83.242  69.404  79.307  80.036  80.492  79.738 87.581
> 25  81.411  68.177  76.078  82.021  73.917  85.144  80.640 81.841
> 26  83.949  80.341  85.789  91.557  79.765  83.947  69.702 85.341
> 27  83.658  76.200 100.851  86.305  84.495  69.886  77.737 76.425
> 28  76.394  83.353  87.395  80.525  94.118  89.063  90.396 94.816
> 29  81.843  80.851  88.369  93.295  81.802  71.887  82.018 85.732
> 30  88.574  85.951  85.119  71.700  84.813  79.997 100.768 82.505
> 31  93.966  78.128  82.154  80.683  75.454  93.724  93.178 95.943
> 32  87.591  89.411  88.065  86.524  91.757  92.604  92.463 82.937
> 33  93.707  86.434  96.498  89.842 100.128  98.619  91.036 93.118
> 34  82.545  95.253  97.402  90.041  93.367  85.060  84.870 91.865
> 35  75.353  89.964  92.132  85.913  90.648  84.194  80.037 89.165
> 36  81.849  91.097  93.174  87.587  71.698  78.295  89.128 82.603
> 37  83.949  89.381  78.108  86.214  90.064  97.816  97.030 83.781
> 38  88.111 100.264  95.391  86.797  91.708  88.839  96.085 91.003
> 39  92.769  80.657  86.627  89.946  82.627  80.103  79.418 88.676
> 40  88.333  79.786  72.769  91.006  84.197  89.045  71.711 83.137
> 41  79.035  90.178  83.819  63.414  74.154  87.681  79.418 89.384
> 42  82.934  80.161  83.594  88.698  89.442  97.930  87.778 84.242
> 43  90.825  84.515  96.182  88.577  83.679  81.754  95.389 81.075
> 44  89.716  83.090  80.486  82.864  74.882  83.104  76.630 89.581
> 45  83.067  85.640  84.871  94.510  85.309  84.969  90.416 72.509
> 46  81.416  84.405  79.890  83.637  95.874  83.731  87.982 89.088
> 47  89.853  90.757  86.073  85.324  84.976  84.750  95.640 90.776
> 48  88.370  81.770  85.813  88.991  88.121  80.944  82.813 81.438
> 49  83.831  81.084  79.509  96.615  91.220  94.676  82.122 76.819
> 50  94.065  97.289  93.711  89.801  87.947  83.049  79.914 85.160
> 51  88.740  84.464  77.532  83.016  83.503  83.253  82.351 96.777
> 52  80.127  83.145  77.085  76.100  80.701  88.951  81.871 79.209
> 53  88.863  85.784  96.540  84.173  91.644  94.332 102.886 70.212
> 54  76.995  89.849  77.787  78.317  77.455  79.488 101.948 90.544
> 55  97.743  87.230  90.618  85.936  89.461  84.197  86.580 84.245
> 56 104.562  90.479  88.083  93.494  88.722  94.396  83.459 87.177
> 57  87.962  85.768  93.382  84.580  74.720  97.627  76.757 82.044
> 58  84.412  89.435 103.483 110.184  81.867  89.945  95.289 91.540
> 59  94.153  90.597 101.249  91.266  96.569  80.198  82.567 95.071
> 60  91.060  87.893  89.693  99.889  90.667 103.929 107.945 87.902
> 61 105.676  92.626  72.970  72.943  94.523  98.931  82.737 84.683
> 62  87.470  77.149 105.173  92.915 100.915  82.787  88.520 95.397
> 63 100.074  97.400  99.915  86.075 105.545  94.806 121.849 93.533
> 64  86.419  75.502  90.001  92.642  90.950  73.946  78.485 85.108
> 65  84.122  87.208  89.215  92.087  91.960  93.284  91.455 84.941
> 66  91.104  86.100  93.346  86.942  88.441 101.037  82.062 96.070
> 67  77.408  85.453  88.856  99.244 101.014  78.578  92.429 83.066
> 68  98.275  87.651  90.984  83.155  92.209  82.608  81.955 93.975
> 69  91.681  77.253  87.819  86.560  82.422  86.137  91.151 96.234
> 70 108.553 101.603  83.831  86.407  92.306  88.639  91.321 90.129
> 71  95.016  80.079  98.591  87.035  78.307  77.509  83.441 97.618
> 72  87.308  89.028 102.868  98.858  90.900  95.758  92.341 99.148
> > 
> > ## two-column binomial fit
> > ldose <- rep(0:5, 2)
> > numdead <- c(1, 4, 9, 13, 18, 20, 0, 2, 6, 10, 12, 16)
> > sex <- factor(rep(c("M", "F"), c(6, 6)))
> > SF <- cbind(numdead, numalive = 20 - numdead)
> > fit4 <- glm(SF ~ sex + ldose - 1, family = binomial)
> > coef(summary(fit4))
>       Estimate Std. Error z value   Pr(>|z|)
> sexF   -3.4732    0.46852 -7.4130 1.2344e-13
> sexM   -2.3724    0.38551 -6.1539 7.5579e-10
> ldose   1.0642    0.13108  8.1190 4.7015e-16
> > set.seed(1)
> > ( ys <- simulate(fit4, nsim = 3) )
>    sim_1.numdead sim_1.numalive sim_2.numdead sim_2.numalive sim_3.numdead
> 1              1             19             2             18             1
> 2              4             16             4             16             4
> 3              9             11            10             10             4
> 4             11              9            14              6            15
> 5             19              1            17              3            16
> 6             18              2            16              4            20
> 7              2             18             0             20             0
> 8              2             18             3             17             2
> 9              5             15             7             13             4
> 10             5             15             7             13             7
> 11            15              5            13              7            12
> 12            19              1            19              1            17
>    sim_3.numalive
> 1              19
> 2              16
> 3              16
> 4               5
> 5               4
> 6               0
> 7              20
> 8              18
> 9              16
> 10             13
> 11              8
> 12              3
> > for(i in seq_len(3))
> +     print(coef(summary(update(fit4, ys[, i] ~ .))))
>       Estimate Std. Error z value   Pr(>|z|)
> sexF   -3.3079    0.45218 -7.3154 2.5656e-13
> sexM   -2.5067    0.39240 -6.3880 1.6812e-10
> ldose   1.0482    0.12869  8.1454 3.7800e-16
>       Estimate Std. Error z value   Pr(>|z|)
> sexF  -2.84478    0.40661 -6.9963 2.6289e-12
> sexM  -2.11845    0.35818 -5.9145 3.3286e-09
> ldose  0.90935    0.11578  7.8541 4.0273e-15
>       Estimate Std. Error z value   Pr(>|z|)
> sexF   -3.9838    0.52156 -7.6384 2.1996e-14
> sexM   -2.8717    0.43047 -6.6712 2.5376e-11
> ldose   1.1487    0.14102  8.1459 3.7655e-16
> > 
> > ## same via proportions
> > fit5 <- glm(numdead/20 ~ sex + ldose - 1, family = binomial,
> +             weights = rep(20, 12))
> > set.seed(1)
> > ( ys <- simulate(fit5, nsim = 3) )
>    sim_1 sim_2 sim_3
> 1   0.05  0.10  0.05
> 2   0.20  0.20  0.20
> 3   0.45  0.50  0.20
> 4   0.55  0.70  0.75
> 5   0.95  0.85  0.80
> 6   0.90  0.80  1.00
> 7   0.10  0.00  0.00
> 8   0.10  0.15  0.10
> 9   0.25  0.35  0.20
> 10  0.25  0.35  0.35
> 11  0.75  0.65  0.60
> 12  0.95  0.95  0.85
> > for(i in seq_len(3))
> +     print(coef(summary(update(fit5, ys[, i] ~ .))))
>       Estimate Std. Error z value   Pr(>|z|)
> sexF   -3.3079    0.45218 -7.3154 2.5656e-13
> sexM   -2.5067    0.39240 -6.3880 1.6812e-10
> ldose   1.0482    0.12869  8.1454 3.7800e-16
>       Estimate Std. Error z value   Pr(>|z|)
> sexF  -2.84478    0.40661 -6.9963 2.6289e-12
> sexM  -2.11845    0.35818 -5.9145 3.3286e-09
> ldose  0.90935    0.11578  7.8541 4.0273e-15
>       Estimate Std. Error z value   Pr(>|z|)
> sexF   -3.9838    0.52156 -7.6384 2.1996e-14
> sexM   -2.8717    0.43047 -6.6712 2.5376e-11
> ldose   1.1487    0.14102  8.1459 3.7655e-16
> > 
> > 
> > ## factor binomial fit
> > bwt <- with(birthwt, {
> +     race <- factor(race, labels = c("white", "black", "other"))
> +     table(ptl)
> +     ptd <- factor(ptl > 0)
> +     table(ftv)
> +     ftv <- factor(ftv)
> +     levels(ftv)[-(1:2)] <- "2+"
> +     data.frame(low = factor(low), age, lwt, race,
> +                smoke = (smoke > 0), ptd, ht = (ht > 0), ui = (ui > 0), ftv)
> + })
> > fit6 <- glm(low ~ ., family = binomial, data = bwt)
> > coef(summary(fit6))
>              Estimate Std. Error  z value  Pr(>|z|)
> (Intercept)  0.823019  1.2447143  0.66121 0.5084769
> age         -0.037234  0.0387024 -0.96207 0.3360159
> lwt         -0.015653  0.0070804 -2.21075 0.0270532
> raceblack    1.192413  0.5359646  2.22480 0.0260948
> raceother    0.740685  0.4617443  1.60410 0.1086916
> smokeTRUE    0.755528  0.4250166  1.77764 0.0754623
> ptdTRUE      1.343763  0.4806207  2.79589 0.0051757
> htTRUE       1.913166  0.7207369  2.65446 0.0079436
> uiTRUE       0.680195  0.4643403  1.46486 0.1429580
> ftv1        -0.436380  0.4793936 -0.91027 0.3626779
> ftv2+        0.179009  0.4563778  0.39224 0.6948827
> > set.seed(1)
> > ys <- simulate(fit6, nsim = 3)
> > ys[1:10, ]
>    sim_1 sim_2 sim_3
> 1      0     0     0
> 2      0     0     0
> 3      0     0     0
> 4      1     0     1
> 5      0     1     1
> 6      1     0     1
> 7      1     0     0
> 8      0     0     0
> 9      0     0     0
> 10     0     0     1
> > for(i in seq_len(3))
> +     print(coef(summary(update(fit6, ys[, i] ~ .))))
>              Estimate Std. Error  z value Pr(>|z|)
> (Intercept) -0.284354  1.2297301 -0.23123 0.817134
> age         -0.011485  0.0389166 -0.29513 0.767897
> lwt         -0.012314  0.0069041 -1.78353 0.074500
> raceblack    0.844051  0.5514350  1.53064 0.125857
> raceother    0.565993  0.4665978  1.21302 0.225122
> smokeTRUE    1.024337  0.4253416  2.40827 0.016028
> ptdTRUE      1.578045  0.4887012  3.22906 0.001242
> htTRUE       1.171556  0.7060321  1.65935 0.097045
> uiTRUE       0.384214  0.4835840  0.79451 0.426897
> ftv1        -0.790699  0.5271049 -1.50008 0.133594
> ftv2+        0.522245  0.4498448  1.16094 0.245665
>              Estimate Std. Error  z value   Pr(>|z|)
> (Intercept)  0.916922   1.433819  0.63950 5.2250e-01
> age          0.034662   0.041752  0.83019 4.0643e-01
> lwt         -0.036299   0.009577 -3.79021 1.5052e-04
> raceblack    2.588992   0.631372  4.10058 4.1211e-05
> raceother    1.073046   0.522576  2.05338 4.0036e-02
> smokeTRUE    0.710930   0.478870  1.48460 1.3765e-01
> ptdTRUE      0.679588   0.503299  1.35027 1.7693e-01
> htTRUE       1.988224   0.801811  2.47967 1.3151e-02
> uiTRUE       1.080176   0.489033  2.20880 2.7189e-02
> ftv1        -0.418153   0.549009 -0.76165 4.4627e-01
> ftv2+        0.657962   0.500605  1.31433 1.8873e-01
>               Estimate Std. Error   z value   Pr(>|z|)
> (Intercept)  1.4927579  1.2779154  1.168119 0.24275859
> age         -0.0986485  0.0415094 -2.376532 0.01747625
> lwt         -0.0088426  0.0070635 -1.251885 0.21061194
> raceblack    0.2106382  0.5622160  0.374657 0.70791549
> raceother    0.8608985  0.4814556  1.788116 0.07375727
> smokeTRUE    0.7884781  0.4449757  1.771958 0.07640158
> ptdTRUE      1.9686209  0.5435116  3.622040 0.00029229
> htTRUE       1.7835637  0.7279712  2.450047 0.01428375
> uiTRUE       1.4816743  0.5139743  2.882779 0.00394184
> ftv1        -0.7388479  0.5090637 -1.451386 0.14667244
> ftv2+       -0.0097438  0.4670024 -0.020865 0.98335371
> > 
> > 
> > ## gamma fit, from example(glm)
> > clotting <- data.frame(u = c(5,10,15,20,30,40,60,80,100),
> +                        lot1 = c(118,58,42,35,27,25,21,19,18))
> > fit7 <- glm(lot1 ~ log(u), data=clotting, family=Gamma)
> > coef(summary(fit7))
>              Estimate Std. Error t value   Pr(>|t|)
> (Intercept) -0.016554 0.00092755 -17.847 4.2791e-07
> log(u)       0.015343 0.00041496  36.975 2.7512e-09
> > set.seed(1)
> > ( ys <- simulate(fit7, nsim = 3) )
>     sim_1   sim_2   sim_3
> 1 119.451 118.552 123.140
> 2  56.310  51.798  48.747
> 3  42.193  39.456  40.843
> 4  34.581  33.905  35.580
> 5  26.208  26.971  27.210
> 6  25.476  25.840  24.437
> 7  22.287  22.151  21.375
> 8  20.206  20.503  19.626
> 9  18.224  19.094  17.952
> > for(i in seq_len(3))
> +     print(coef(summary(update(fit7, ys[, i] ~ .))))
>              Estimate Std. Error t value   Pr(>|t|)
> (Intercept) -0.016008 0.00077887 -20.553 1.6197e-07
> log(u)       0.015044 0.00034611  43.465 8.9084e-10
>              Estimate Std. Error t value   Pr(>|t|)
> (Intercept) -0.015483 0.00050102 -30.903 9.5910e-09
> log(u)       0.014935 0.00021999  67.889 3.9547e-11
>              Estimate Std. Error t value   Pr(>|t|)
> (Intercept) -0.016850 0.00075120 -22.431 8.8554e-08
> log(u)       0.015569 0.00033659  46.256 5.7704e-10
> > 
> > 
  Running 'smooth.spline.R'
  Running 'ts-tests.R'
 OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING
See
  '/«PKGBUILDDIR»/tests/stats.Rcheck/00check.log'
for details.


checking package 'datasets'
* using log directory '/«PKGBUILDDIR»/tests/datasets.Rcheck'
* using R version 3.2.3 (2015-12-10)
* using platform: i686-pc-linux-gnu (32-bit)
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'datasets' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking examples ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

checking package 'methods'
* using log directory '/«PKGBUILDDIR»/tests/methods.Rcheck'
* using R version 3.2.3 (2015-12-10)
* using platform: i686-pc-linux-gnu (32-bit)
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'methods' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Unknown package 'Matrix' in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking compiled code ... OK
* checking examples ... SKIPPED
* checking tests ...
  Running 'S3.R'
  Running 'basicRefClass.R'
  Running 'duplicateClass.R'
  Running 'fieldAssignments.R'
  Running 'mixinInitialize.R'
  Running 'namesAndSlots.R'
  Running 'nextWithDots.R'
  Running 'refClassExample.R'
  Running 'testConditionalIs.R'
  Running 'testGroupGeneric.R'
  Running 'testIs.R'
 OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING
See
  '/«PKGBUILDDIR»/tests/methods.Rcheck/00check.log'
for details.


checking package 'grid'
* using log directory '/«PKGBUILDDIR»/tests/grid.Rcheck'
* using R version 3.2.3 (2015-12-10)
* using platform: i686-pc-linux-gnu (32-bit)
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'grid' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Unknown package 'lattice' in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking compiled code ... OK
* checking files in 'vignettes' ... OK
* checking examples ... SKIPPED
* checking tests ...
  Running 'bugs.R'
  Running 'reg.R'
  Running 'testls.R'
  Comparing 'testls.Rout' to 'testls.Rout.save' ... OK
  Running 'units.R'
 OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ...
   'displaylist.Rnw' ... OK
   'frame.Rnw' ... OK
   'grid.Rnw' ... failed
   'grobs.Rnw' ... OK
   'interactive.Rnw' ... OK
   'locndimn.Rnw' ... OK
   'moveline.Rnw' ... OK
   'nonfinite.Rnw' ... OK
   'plotexample.Rnw' ... OK
   'rotated.Rnw' ... OK
   'saveload.Rnw' ... OK
   'sharing.Rnw' ... OK
   'viewports.Rnw' ... OK
 WARNING
Errors in running code in vignettes:
when running code in 'grid.Rnw'
  ...

> leg(legLabels)

> popViewport(3)

> library(lattice)

  When sourcing 'grid.R':
Error: there is no package called 'lattice'
Execution halted

* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs
See
  '/«PKGBUILDDIR»/tests/grid.Rcheck/00check.log'
for details.


checking package 'splines'
* using log directory '/«PKGBUILDDIR»/tests/splines.Rcheck'
* using R version 3.2.3 (2015-12-10)
* using platform: i686-pc-linux-gnu (32-bit)
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'splines' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Unknown package 'Matrix' in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking compiled code ... OK
* checking examples ... SKIPPED
* checking tests ...
  Running 'spline-tst.R'
 ERROR
Running the tests in 'tests/spline-tst.R' failed.
Last 13 lines of output:
  > proc.time()
     user  system elapsed 
    2.752   0.016   2.765 
  > 
  > ###----------------- sparse / dense   interpSpline() ---------------------------
  > 
  > ## from  help(interpSpline) -- ../man/interpSpline.Rd
  > ispl <- interpSpline( women$height, women$weight)
  > isp. <- interpSpline( women$height, women$weight, sparse=TRUE)
  Error in splineDesign(knots, x, ord, derivs, sparse = sparse) : 
    splineDesign(*, sparse=TRUE) needs package 'Matrix' correctly installed
  Calls: interpSpline -> interpSpline.default -> splineDesign
  Execution halted
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR, 1 WARNING
See
  '/«PKGBUILDDIR»/tests/splines.Rcheck/00check.log'
for details.


checking package 'stats4'
* using log directory '/«PKGBUILDDIR»/tests/stats4.Rcheck'
* using R version 3.2.3 (2015-12-10)
* using platform: i686-pc-linux-gnu (32-bit)
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'stats4' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking examples ... SKIPPED
* checking tests ...
  Running 'confint.R'
 OK
* checking PDF version of manual ... OK
* DONE

Status: OK

checking package 'tcltk'
* using log directory '/«PKGBUILDDIR»/tests/tcltk.Rcheck'
* using R version 3.2.3 (2015-12-10)
* using platform: i686-pc-linux-gnu (32-bit)
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'tcltk' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking compiled code ... OK
* checking examples ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

checking package 'compiler'
* using log directory '/«PKGBUILDDIR»/tests/compiler.Rcheck'
* using R version 3.2.3 (2015-12-10)
* using platform: i686-pc-linux-gnu (32-bit)
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'compiler' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking examples ... SKIPPED
* checking tests ...
  Running 'assign.R'
  Running 'basics.R'
  Running 'const.R'
  Running 'envir.R'
  Running 'jit.R'
  Running 'loop.R'
  Running 'switch.R'
 OK
* checking PDF version of manual ... OK
* DONE

Status: OK

checking package 'parallel'
* using log directory '/«PKGBUILDDIR»/tests/parallel.Rcheck'
* using R version 3.2.3 (2015-12-10)
* using platform: i686-pc-linux-gnu (32-bit)
* using session charset: ASCII
* using option '--no-build-vignettes'
* looks like 'parallel' is a base package
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking compiled code ... OK
* checking files in 'vignettes' ... OK
* checking examples ... SKIPPED
* checking tests ...
  Running 'Master.R'
 OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ...
   'parallel.Rnw' ... OK
 OK
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

make[4]: Leaving directory '/«PKGBUILDDIR»/tests'
make[3]: Leaving directory '/«PKGBUILDDIR»/tests'
make[3]: Entering directory '/«PKGBUILDDIR»/tests'
checking package 'MASS'
* using log directory '/«PKGBUILDDIR»/tests/MASS.Rcheck'
* using R version 3.2.3 (2015-12-10)
* using platform: i686-pc-linux-gnu (32-bit)
* using session charset: ASCII
* checking for file 'MASS/DESCRIPTION' ... OK
* this is package 'MASS' version '7.3-45'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Packages suggested but not available for checking:
  'lattice' 'nlme' 'nnet' 'survival'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Invalid citation information in 'inst/CITATION':
  Warning message:
  In utils::packageDescription(basename(dir), dirname(dir)) :
    no package 'MASS' was found
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... ERROR
Loading this package had a fatal error status code 1
Loading log:
Error in library(MASS) : there is no package called 'MASS'
Execution halted
* DONE

Status: 1 ERROR, 1 WARNING, 1 NOTE
See
  '/«PKGBUILDDIR»/tests/MASS.Rcheck/00check.log'
for details.


checking package 'lattice'
* using log directory '/«PKGBUILDDIR»/tests/lattice.Rcheck'
* using R version 3.2.3 (2015-12-10)
* using platform: i686-pc-linux-gnu (32-bit)
* using session charset: ASCII
* checking for file 'lattice/DESCRIPTION' ... OK
* this is package 'lattice' version '0.20-33'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Packages suggested but not available for checking: 'KernSmooth' 'MASS'

Package which this enhances but not available for checking: 'chron'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Invalid citation information in 'inst/CITATION':
  Warning message:
  In utils::packageDescription(basename(dir), dirname(dir)) :
    no package 'lattice' was found
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... ERROR
Loading this package had a fatal error status code 1
Loading log:
Error in library(lattice) : there is no package called 'lattice'
Execution halted
* DONE

Status: 1 ERROR, 1 WARNING, 1 NOTE
See
  '/«PKGBUILDDIR»/tests/lattice.Rcheck/00check.log'
for details.


checking package 'Matrix'
* using log directory '/«PKGBUILDDIR»/tests/Matrix.Rcheck'
* using R version 3.2.3 (2015-12-10)
* using platform: i686-pc-linux-gnu (32-bit)
* using session charset: ASCII
* checking for file 'Matrix/DESCRIPTION' ... OK
* this is package 'Matrix' version '1.2-3'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: 'lattice'

Packages suggested but not available for checking: 'expm' 'MASS'

Packages which this enhances but not available for checking:
  'MatrixModels' 'graph' 'SparseM' 'sfsmisc'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
* DONE

Status: 1 ERROR
See
  '/«PKGBUILDDIR»/tests/Matrix.Rcheck/00check.log'
for details.


checking package 'nlme'
* using log directory '/«PKGBUILDDIR»/tests/nlme.Rcheck'
* using R version 3.2.3 (2015-12-10)
* using platform: i686-pc-linux-gnu (32-bit)
* using session charset: ASCII
* checking for file 'nlme/DESCRIPTION' ... OK
* this is package 'nlme' version '3.1-122'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: 'lattice'

Packages suggested but not available for checking: 'Hmisc' 'MASS'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
* DONE

Status: 1 ERROR
See
  '/«PKGBUILDDIR»/tests/nlme.Rcheck/00check.log'
for details.


checking package 'survival'
* using log directory '/«PKGBUILDDIR»/tests/survival.Rcheck'
* using R version 3.2.3 (2015-12-10)
* using platform: i686-pc-linux-gnu (32-bit)
* using session charset: ASCII
* checking for file 'survival/DESCRIPTION' ... OK
* this is package 'survival' version '2.38-3'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: 'cmprsk'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* skipping installation test
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Invalid citation information in 'inst/CITATION':
  Warning message:
  In utils::packageDescription(basename(dir), dirname(dir)) :
    no package 'survival' was found
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... ERROR
Loading this package had a fatal error status code 1
Loading log:
Error in library(survival) : there is no package called 'survival'
Execution halted
* DONE

Status: 1 ERROR, 1 WARNING, 1 NOTE
See
  '/«PKGBUILDDIR»/tests/survival.Rcheck/00check.log'
for details.


checking package 'boot'
* using log directory '/«PKGBUILDDIR»/tests/boot.Rcheck'
* using R version 3.2.3 (2015-12-10)
* using platform: i686-pc-linux-gnu (32-bit)
* using session charset: ASCII
* checking for file 'boot/DESCRIPTION' ... OK
* this is package 'boot' version '1.3-17'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Packages suggested but not available for checking: 'MASS' 'survival'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Invalid citation information in 'inst/CITATION':
  Warning message:
  In utils::packageDescription(basename(dir), dirname(dir)) :
    no package 'boot' was found
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... ERROR
Loading this package had a fatal error status code 1
Loading log:
Error in library(boot) : there is no package called 'boot'
Execution halted
* DONE

Status: 1 ERROR, 1 WARNING, 1 NOTE
See
  '/«PKGBUILDDIR»/tests/boot.Rcheck/00check.log'
for details.


checking package 'cluster'
* using log directory '/«PKGBUILDDIR»/tests/cluster.Rcheck'
* using R version 3.2.3 (2015-12-10)
* using platform: i686-pc-linux-gnu (32-bit)
* using session charset: ASCII
* checking for file 'cluster/DESCRIPTION' ... OK
* this is package 'cluster' version '2.0.3'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: 'MASS'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Invalid citation information in 'inst/CITATION':
  Warning message:
  In utils::packageDescription(basename(dir), dirname(dir)) :
    no package 'cluster' was found
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... ERROR
Loading this package had a fatal error status code 1
Loading log:
Error in library(cluster) : there is no package called 'cluster'
Execution halted
* DONE

Status: 1 ERROR, 1 WARNING, 2 NOTEs
See
  '/«PKGBUILDDIR»/tests/cluster.Rcheck/00check.log'
for details.


checking package 'codetools'
* using log directory '/«PKGBUILDDIR»/tests/codetools.Rcheck'
* using R version 3.2.3 (2015-12-10)
* using platform: i686-pc-linux-gnu (32-bit)
* using session charset: ASCII
* checking for file 'codetools/DESCRIPTION' ... OK
* this is package 'codetools' version '0.2-14'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... ERROR
Loading this package had a fatal error status code 1
Loading log:
Error in library(codetools) : there is no package called 'codetools'
Execution halted
* DONE

Status: 1 ERROR
See
  '/«PKGBUILDDIR»/tests/codetools.Rcheck/00check.log'
for details.


checking package 'foreign'
* using log directory '/«PKGBUILDDIR»/tests/foreign.Rcheck'
* using R version 3.2.3 (2015-12-10)
* using platform: i686-pc-linux-gnu (32-bit)
* using session charset: ASCII
* checking for file 'foreign/DESCRIPTION' ... OK
* this is package 'foreign' version '0.8-66'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... ERROR
Loading this package had a fatal error status code 1
Loading log:
Error in library(foreign) : there is no package called 'foreign'
Execution halted
* DONE

Status: 1 ERROR
See
  '/«PKGBUILDDIR»/tests/foreign.Rcheck/00check.log'
for details.


checking package 'KernSmooth'
* using log directory '/«PKGBUILDDIR»/tests/KernSmooth.Rcheck'
* using R version 3.2.3 (2015-12-10)
* using platform: i686-pc-linux-gnu (32-bit)
* using session charset: ASCII
* checking for file 'KernSmooth/DESCRIPTION' ... OK
* this is package 'KernSmooth' version '2.23-15'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: 'MASS'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... ERROR
Loading this package had a fatal error status code 1
Loading log:
Error in library(KernSmooth) : there is no package called 'KernSmooth'
Execution halted
* DONE

Status: 1 ERROR, 1 NOTE
See
  '/«PKGBUILDDIR»/tests/KernSmooth.Rcheck/00check.log'
for details.


checking package 'rpart'
* using log directory '/«PKGBUILDDIR»/tests/rpart.Rcheck'
* using R version 3.2.3 (2015-12-10)
* using platform: i686-pc-linux-gnu (32-bit)
* using session charset: ASCII
* checking for file 'rpart/DESCRIPTION' ... OK
* this is package 'rpart' version '4.1-10'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: 'survival'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* skipping installation test
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... ERROR
Loading this package had a fatal error status code 1
Loading log:
Error in library(rpart) : there is no package called 'rpart'
Execution halted
* DONE

Status: 1 ERROR, 1 NOTE
See
  '/«PKGBUILDDIR»/tests/rpart.Rcheck/00check.log'
for details.


checking package 'class'
* using log directory '/«PKGBUILDDIR»/tests/class.Rcheck'
* using R version 3.2.3 (2015-12-10)
* using platform: i686-pc-linux-gnu (32-bit)
* using session charset: ASCII
* checking for file 'class/DESCRIPTION' ... OK
* this is package 'class' version '7.3-14'
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package required but not available: 'MASS'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
* DONE

Status: 1 ERROR
See
  '/«PKGBUILDDIR»/tests/class.Rcheck/00check.log'
for details.


checking package 'nnet'
* using log directory '/«PKGBUILDDIR»/tests/nnet.Rcheck'
* using R version 3.2.3 (2015-12-10)
* using platform: i686-pc-linux-gnu (32-bit)
* using session charset: ASCII
* checking for file 'nnet/DESCRIPTION' ... OK
* this is package 'nnet' version '7.3-11'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: 'MASS'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Invalid citation information in 'inst/CITATION':
  Warning message:
  In utils::packageDescription(basename(dir), dirname(dir)) :
    no package 'nnet' was found
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... ERROR
Loading this package had a fatal error status code 1
Loading log:
Error in library(nnet) : there is no package called 'nnet'
Execution halted
* DONE

Status: 1 ERROR, 1 WARNING, 1 NOTE
See
  '/«PKGBUILDDIR»/tests/nnet.Rcheck/00check.log'
for details.


checking package 'spatial'
* using log directory '/«PKGBUILDDIR»/tests/spatial.Rcheck'
* using R version 3.2.3 (2015-12-10)
* using platform: i686-pc-linux-gnu (32-bit)
* using session charset: ASCII
* checking for file 'spatial/DESCRIPTION' ... OK
* this is package 'spatial' version '7.3-11'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: 'MASS'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* skipping installation test
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Invalid citation information in 'inst/CITATION':
  Warning message:
  In utils::packageDescription(basename(dir), dirname(dir)) :
    no package 'spatial' was found
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... ERROR
Loading this package had a fatal error status code 1
Loading log:
Error in library(spatial) : there is no package called 'spatial'
Execution halted
* DONE

Status: 1 ERROR, 1 WARNING, 1 NOTE
See
  '/«PKGBUILDDIR»/tests/spatial.Rcheck/00check.log'
for details.


checking package 'mgcv'
* using log directory '/«PKGBUILDDIR»/tests/mgcv.Rcheck'
* using R version 3.2.3 (2015-12-10)
* using platform: i686-pc-linux-gnu (32-bit)
* using session charset: ASCII
* checking for file 'mgcv/DESCRIPTION' ... OK
* this is package 'mgcv' version '1.8-9'
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages required but not available: 'nlme' 'Matrix'

Packages suggested but not available for checking: 'survival' 'MASS'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
* DONE

Status: 1 ERROR
See
  '/«PKGBUILDDIR»/tests/mgcv.Rcheck/00check.log'
for details.


make[3]: Leaving directory '/«PKGBUILDDIR»/tests'
make[2]: Leaving directory '/«PKGBUILDDIR»/tests'
make[1]: Leaving directory '/«PKGBUILDDIR»'
touch check-stamp
 fakeroot debian/rules binary-arch
*** install-arch ***
dh_testdir
dh_testroot
dh_prep -a
dh_installdirs -A
/«PKGBUILDDIR»/debian/r-base-core
/usr/bin/make DESTDIR=/«PKGBUILDDIR»/debian/r-base-core install
make[1]: Entering directory '/«PKGBUILDDIR»'
make[2]: Entering directory '/«PKGBUILDDIR»/m4'
make[2]: Nothing to be done for 'install'.
make[2]: Leaving directory '/«PKGBUILDDIR»/m4'
make[2]: Entering directory '/«PKGBUILDDIR»/tools'
make[2]: Nothing to be done for 'install'.
make[2]: Leaving directory '/«PKGBUILDDIR»/tools'
make[2]: Entering directory '/«PKGBUILDDIR»/doc'
installing doc ...
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/doc
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/man/man1
make[3]: Entering directory '/«PKGBUILDDIR»/doc/html'
installing doc/html ...
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/doc/html
make[3]: Leaving directory '/«PKGBUILDDIR»/doc/html'
make[3]: Entering directory '/«PKGBUILDDIR»/doc/manual'
installing doc/manual ...
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/doc/manual
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/doc/manual/images
make[3]: Leaving directory '/«PKGBUILDDIR»/doc/manual'
make[2]: Leaving directory '/«PKGBUILDDIR»/doc'
make[2]: Entering directory '/«PKGBUILDDIR»/etc'
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/etc
installing etc ...
make[2]: Leaving directory '/«PKGBUILDDIR»/etc'
make[2]: Entering directory '/«PKGBUILDDIR»/share'
installing share ...
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/R
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/dictionaries
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/encodings
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/java
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/licenses
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/make
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/Rd
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/Rd/macros
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/sh
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/texmf
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/texmf/bibtex/bib
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/texmf/bibtex/bst
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/texmf/tex/latex
make[2]: Leaving directory '/«PKGBUILDDIR»/share'
make[2]: Entering directory '/«PKGBUILDDIR»/src'
make[3]: Entering directory '/«PKGBUILDDIR»/src/scripts'
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/bin
make[3]: Leaving directory '/«PKGBUILDDIR»/src/scripts'
make[3]: Entering directory '/«PKGBUILDDIR»/src/include'
make[4]: Entering directory '/«PKGBUILDDIR»/src/include/R_ext'
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/include/R_ext
make[4]: Leaving directory '/«PKGBUILDDIR»/src/include/R_ext'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/include'
make[3]: Entering directory '/«PKGBUILDDIR»/src/extra'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/blas'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/blas'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/bzip2'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/bzip2'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/pcre'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/pcre'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/tre'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/xdr'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/xdr'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/xz'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/xz'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/zlib'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/zlib'
make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/intl'
make[4]: Nothing to be done for 'install'.
make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/intl'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/extra'
make[3]: Entering directory '/«PKGBUILDDIR»/src/appl'
make[3]: Nothing to be done for 'install'.
make[3]: Leaving directory '/«PKGBUILDDIR»/src/appl'
make[3]: Entering directory '/«PKGBUILDDIR»/src/nmath'
make[3]: Nothing to be done for 'install'.
make[3]: Leaving directory '/«PKGBUILDDIR»/src/nmath'
make[3]: Entering directory '/«PKGBUILDDIR»/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H    -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -Wl,-Bsymbolic-functions -Wl,-z,relro -DR_HOME='"/usr/lib/R"' \
  -o Rscript ./Rscript.c
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/lib/pkgconfig
make[3]: Leaving directory '/«PKGBUILDDIR»/src/unix'
make[3]: Entering directory '/«PKGBUILDDIR»/src/main'
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/bin/exec
make[4]: Entering directory '/«PKGBUILDDIR»/src/main'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[4]: Entering directory '/«PKGBUILDDIR»/src/main'
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/lib
make[4]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/main'
make[3]: Entering directory '/«PKGBUILDDIR»/src/modules'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/internet'
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/modules
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/internet'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/lapack'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/lapack'
make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/X11'
make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11'
make[3]: Leaving directory '/«PKGBUILDDIR»/src/modules'
make[3]: Entering directory '/«PKGBUILDDIR»/src/library'
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/library
installing packages ...
  building HTML index ...
make[3]: Leaving directory '/«PKGBUILDDIR»/src/library'
make[2]: Leaving directory '/«PKGBUILDDIR»/src'
make[2]: Entering directory '/«PKGBUILDDIR»/tests'
make[2]: Nothing to be done for 'install'.
make[2]: Leaving directory '/«PKGBUILDDIR»/tests'
make[1]: Leaving directory '/«PKGBUILDDIR»'
(cd src/unix; 						\
	rm -vf Rscript /«PKGBUILDDIR»/debian/r-base-core/usr/bin/Rscript;	\
	/usr/bin/make	CFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT"		\
		CXXFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT"	\
		FFLAGS="-g -O2 -fstack-protector-strong -D_REENTRANT"	\
		CC="gcc -std=gnu99"				\
		CXX=g++			\
		F77=gfortran			\
		RHOME=/usr/lib/R			\
		DESTDIR=/«PKGBUILDDIR»/debian/r-base-core			\
		install-Rscript )
removed 'Rscript'
removed '/«PKGBUILDDIR»/debian/r-base-core/usr/bin/Rscript'
make[1]: Entering directory '/«PKGBUILDDIR»/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H    -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -Wl,-Bsymbolic-functions -Wl,-z,relro -DR_HOME='"/usr/lib/R"' \
  -o Rscript ./Rscript.c
make[1]: Leaving directory '/«PKGBUILDDIR»/src/unix'
#ls -ltr /«PKGBUILDDIR»/debian/r-base-core/usr/bin/
#strings src/unix/Rscript					
cp -vax src/unix/Rscript /«PKGBUILDDIR»/debian/r-base-core/usr/bin/
'src/unix/Rscript' -> '/«PKGBUILDDIR»/debian/r-base-core/usr/bin/Rscript'
#ls -ltr /«PKGBUILDDIR»/debian/r-base-core/usr/bin/
#strings /«PKGBUILDDIR»/debian/r-base-core/usr/bin/Rscript
(cd src/nmath/standalone;				\
	/usr/bin/make DESTDIR=/«PKGBUILDDIR»/debian/r-base-core install )
make[1]: Entering directory '/«PKGBUILDDIR»/src/nmath/standalone'
make[2]: Entering directory '/«PKGBUILDDIR»/src/include'
make[2]: 'Rmath.h' is up to date.
make[2]: Leaving directory '/«PKGBUILDDIR»/src/include'
/«PKGBUILDDIR»/debian/r-base-core/usr/share/R/include/Rmath.h is unchanged
make[1]: Leaving directory '/«PKGBUILDDIR»/src/nmath/standalone'
chmod a+x	/«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/sh/echo.sh		
rm -v	/«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/COPYING  		
removed '/«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/COPYING'
(cd /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/; \
	ln -s ../../share/common-licenses/GPL-2 COPYING)
rm -v	/«PKGBUILDDIR»/debian/r-base-core/usr/share/R/doc/COPYING  	
removed '/«PKGBUILDDIR»/debian/r-base-core/usr/share/R/doc/COPYING'
(cd /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/doc; \
	ln -s ../../../share/common-licenses/GPL-2 COPYING)
# edd 03 Oct 2006  use link into /usr/share/, not /usr/lib/
(cd /«PKGBUILDDIR»/debian/r-base-core/usr/share/texmf/tex/latex && 	\
    ln -s ../../../R/share/texmf R)
dh_movefiles	--sourcedir=debian/r-base-core -pr-doc-html
dh_movefiles	--sourcedir=debian/r-base-core -pr-base-html
dh_movefiles	--sourcedir=debian/r-base-core -pr-base-latex
make		prefix=/«PKGBUILDDIR»/debian/r-base-core/usr			\
		rdocdir=/«PKGBUILDDIR»/debian/r-base-core/usr/share/R/doc	\
		install-pdf
make[1]: Entering directory '/«PKGBUILDDIR»'
make[2]: Entering directory '/«PKGBUILDDIR»/doc/manual'
creating doc/manual/version.tex
collecting LaTeX docs for package 'base' ...
Converting parsed Rd's to LaTeX ..........................................
collecting LaTeX docs for package 'tools' ...
Converting parsed Rd's to LaTeX ......
collecting LaTeX docs for package 'utils' ...
Converting parsed Rd's to LaTeX .............
collecting LaTeX docs for package 'grDevices' ...
Converting parsed Rd's to LaTeX ......
collecting LaTeX docs for package 'graphics' ...
Converting parsed Rd's to LaTeX .......
collecting LaTeX docs for package 'stats' ...
Converting parsed Rd's to LaTeX ..............................
collecting LaTeX docs for package 'datasets' ...
Converting parsed Rd's to LaTeX ........
collecting LaTeX docs for package 'methods' ...
Converting parsed Rd's to LaTeX .......
collecting LaTeX docs for package 'grid' ...
Converting parsed Rd's to LaTeX .........
collecting LaTeX docs for package 'splines' ...
Converting parsed Rd's to LaTeX .
collecting LaTeX docs for package 'stats4' ...
Converting parsed Rd's to LaTeX .
collecting LaTeX docs for package 'tcltk' ...
Converting parsed Rd's to LaTeX .
collecting LaTeX docs for package 'compiler' ...
Converting parsed Rd's to LaTeX 
collecting LaTeX docs for package 'parallel' ...
Converting parsed Rd's to LaTeX .
PDF/LaTeX documentation: full reference index ...
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Chapter 1.
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[]\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h
igh-est, for
[1] [2]
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[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1
/ptm/m/n/10 such that \T1/zi4/m/n/10 1 - x != 1\T1/ptm/m/n/10 .

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\T1/ptm/m/n/10 It equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1
/ptm/m/n/10 if

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\T1/zi4/m/n/10 double.base \T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.roundin
g \T1/ptm/m/n/10 is 0; oth-er-wise, it is

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[]\T1/ptm/m/n/10 the largest nor-mal-ized floating-point num-ber. Typ-i-cally, 
it is equal to
[3] [4] [5]
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[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/
10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues
[6]
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[]\T1/ptm/m/n/10 logical: should \T1/zi4/m/n/10 minlength \T1/ptm/m/n/10 be ob-
served strictly? Note that set-ting
[7] [8]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ',
[9] [10] [11] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd)
[12] [13] [14] [15] [16] [17] [18]
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[]\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec-
tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis
t of length
[19] [20] [21] [22]
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[]\T1/zi4/m/n/10 %% \T1/ptm/m/n/10 in-di-cates \T1/zi4/m/n/10 x mod y \T1/ptm/m
/n/10 and \T1/zi4/m/n/10 %/% \T1/ptm/m/n/10 in-di-cates in-te-ger di-vi-sion. I
t is guar-an-teed that
[23] [24] [25] [26] [27] [28] [29]
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 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 
[30] [31] [32]
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[]\T1/ptm/m/n/10 a date-time ob-ject, or some-thing which can be co-erced by
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[48] [49] [50] [51] [52] [53] [54] [55]
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[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
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[71] [72] [73] [74]
Underfull \hbox (badness 2521) in paragraph at lines 4728--4730
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
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[90] [91] [92] [93]
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[]\T1/ptm/m/n/10 New restarts for \T1/zi4/m/n/10 withRestarts \T1/ptm/m/n/10 ca
n be spec-i-fied in sev-eral ways. The sim-plest is in
[94] [95] [96]
Overfull \hbox (58.35893pt too wide) in paragraph at lines 6146--6149
[]\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa
ult", "internal", "wininet", "libcurl")\T1/ptm/m/n/10 :
[97] [98]
Underfull \hbox (badness 10000) in paragraph at lines 6290--6293
[]\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo
st gen-eral form (from RFC1738) is
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Underfull \hbox (badness 1442) in paragraph at lines 6451--6457
[]\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \
T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re-
move a

Underfull \hbox (badness 1248) in paragraph at lines 6451--6457
\T1/ptm/m/n/10 Byte Or-der Mark if present (which it of-ten is for files and we
b-pages gen-er-ated by Mi-

Underfull \hbox (badness 2080) in paragraph at lines 6451--6457
\T1/ptm/m/n/10 crosoft ap-pli-ca-tions). If a BOM is re-quired (it is not rec-o
m-mended) when writ-ing it
[101]
Underfull \hbox (badness 3568) in paragraph at lines 6512--6519
\T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z
i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as
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\T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https
 : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$
[][]\T1/ptm/m/n/10 .
[112]
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[]\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h
igh-est, for
[113]
Underfull \hbox (badness 3000) in paragraph at lines 7242--7244
[]\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0, \T1/zi4/m/n/10 
getOption("OutDec") \T1/ptm/m/n/10 is con-sulted when la-bels are con-structed 
for

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[][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c
ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][
]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T
1/ptm/m/n/10 ,
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[]\T1/zi4/m/n/10 data.frame \T1/ptm/m/n/10 con-verts each of its ar-gu-ments to
 a data frame by call-ing
[118]
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[][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 
, [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[]
[][] \T1/ptm/m/n/10 (for the col-umn names),

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[][]\T1/zi4/m/n/10 [.data.frame[][][] \T1/ptm/m/n/10 for sub-set-ting meth-ods,
 [][]\T1/zi4/m/n/10 Math.data.frame[][][] \T1/ptm/m/n/10 etc, about \T1/ptm/m/i
t/10 Group \T1/ptm/m/n/10 meth-ods for
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[143]
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[]\T1/ptm/m/n/10 Subtraction of date-time ob-jects gives an ob-ject of this cla
ss, by call-ing \T1/zi4/m/n/10 difftime \T1/ptm/m/n/10 with
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[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 dontCheck \T1/ptm/m/n/10 func-tion is the s
ame as [][]\T1/zi4/m/n/10 identity[][][]\T1/ptm/m/n/10 , but is in-ter-preted b
y \T1/zi4/m/n/10 R CMD check

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\T1/ptm/m/n/10 code anal-y-sis as a di-rec-tive to sup-press check-ing of \T1/z
i4/m/n/10 x\T1/ptm/m/n/10 . Cur-rently this is only used by
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\T1/zi4/m/n/10 754-[]2008$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 https : / / 
en . wikipedia . org / wiki / Double _ precision$[][]\T1/ptm/m/n/10 , [][]$\T1/
zi4/m/n/10 https : / / en . wikipedia .
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if du-pli-ca-tion should be con-sid-ered
 from the re-verse
[157]
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[]\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len
t method def-i-ni-tions for

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[]\T1/ptm/m/n/10 Except for fac-tors, log-i-cal and raw vec-tors the de-fault \
T1/zi4/m/n/10 nmax = NA \T1/ptm/m/n/10 is equiv-a-lent to
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[]\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been
 passed as an ar-gu-ment

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\T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller'
s en-vi-ron-ment, i.e., one needs
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[]\T1/ptm/m/n/10 Both \T1/zi4/m/n/10 $ \T1/ptm/m/n/10 and \T1/zi4/m/n/10 [[ \T1
/ptm/m/n/10 can be ap-plied to en-vi-ron-ments. Only char-ac-ter in-dices are a
l-lowed

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\T1/ptm/m/n/10 and no par-tial match-ing is done. The se-man-tics of these op-e
r-a-tions are those of
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[]\T1/ptm/m/n/10 For \T1/zi4/m/n/10 iconv \T1/ptm/m/n/10 this will give the im-
ple-men-ta-tion as well as the ver-sion, for ex-am-ple
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[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
[198]
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[][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo
lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi
le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/
10 , and
[199]
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[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m
/n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with
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[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/
zi4/m/n/10 file.copy \T1/ptm/m/n/10 and
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[][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac
cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [
][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/
zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 ,

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[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik
i /
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Underfull \hbox (badness 3965) in paragraph at lines 13403--13407
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
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Underfull \hbox (badness 4429) in paragraph at lines 14133--14136
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
\T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for
[219]
Underfull \hbox (badness 10000) in paragraph at lines 14225--14227
[]\T1/ptm/m/n/10 If you set \T1/zi4/m/n/10 format \T1/ptm/m/n/10 it over-rides 
the set-ting of \T1/zi4/m/n/10 mode\T1/ptm/m/n/10 , so

Underfull \hbox (badness 10000) in paragraph at lines 14231--14235
[]\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b
ers on the dec-i-mal point, so
[220]
Underfull \hbox (badness 10000) in paragraph at lines 14273--14277
[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in
 \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt
m/m/n/10 3.2.0: for use

Underfull \hbox (badness 4156) in paragraph at lines 14273--14277
\T1/ptm/m/n/10 within [][]\T1/zi4/m/n/10 print[][][] \T1/ptm/m/n/10 meth-ods in
 pack-ages which might be used with ear-lier ver-sions: use
[221]
Underfull \vbox (badness 3803) has occurred while \output is active [222]
[223] [224] [225] [226] [227] [228] [229]
Underfull \hbox (badness 2452) in paragraph at lines 14853--14857
[]\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m
ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-

Underfull \hbox (badness 1147) in paragraph at lines 14853--14857
\T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to
 the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_
WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and
[230] [231] [232]
Underfull \hbox (badness 1092) in paragraph at lines 15026--15031
[][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t
he DLL has been loaded us-ing
[233] [234] [235] [236]
Underfull \hbox (badness 6741) in paragraph at lines 15274--15278
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \
T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10
 ,
[237] [238] [239] [240]
Underfull \hbox (badness 1867) in paragraph at lines 15580--15587
[]\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][]
[] (or char-ac-ter string for
[241] [242] [243] [244]
Underfull \vbox (badness 10000) has occurred while \output is active [245]
[246]
Underfull \hbox (badness 3679) in paragraph at lines 15960--15962
[]\T1/ptm/m/n/10 The TRE li-brary of Ville Lau-rikari ([][]$\T1/zi4/m/n/10 http
 : / / laurikari . net / tre/$[][]\T1/ptm/m/n/10 ) is used ex-cept for
[247] [248] [249] [250] [251] [252] [253]
Underfull \hbox (badness 1478) in paragraph at lines 16440--16443
[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
[254] [255] [256] [257]
Underfull \hbox (badness 10000) in paragraph at lines 16693--16695
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 http : / / www
 . unicode . org / reports / tr35 /
[258] [259] [260] [261] [262] [263] [264] [265] [266]
Underfull \hbox (badness 1442) in paragraph at lines 17256--17258
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see
[267]
Underfull \hbox (badness 2452) in paragraph at lines 17348--17364
[][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c
omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 ,
 [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi
cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\
T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 ,
[268] [269] [270] [271] [272] [273] [274]
Underfull \hbox (badness 1248) in paragraph at lines 17756--17759
[]\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type
s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n
/10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/
m/n/10 ,
[275] [276] [277] [278]
Underfull \hbox (badness 4739) in paragraph at lines 18012--18014
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
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[291] [292] [293] [294]
Underfull \hbox (badness 1360) in paragraph at lines 18960--18965
\T1/zi4/m/n/10 "none"\T1/ptm/m/n/10 . It is in-tended for the ver-sion of OpenS
SL used, but not all

Underfull \hbox (badness 10000) in paragraph at lines 18983--18989
[][][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / sslcerts . html$[][]
 \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs /

Underfull \hbox (badness 1127) in paragraph at lines 18983--18989
\T1/zi4/m/n/10 ssl-[]compared . html$[][] \T1/ptm/m/n/10 for more de-tails on S
SL ver-sions. Nor-mally \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 used with \T1/phv
/m/n/10 R
[295]
Underfull \hbox (badness 10000) in paragraph at lines 19056--19060
[]\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an
d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory

Underfull \hbox (badness 2460) in paragraph at lines 19056--19060
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/
10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T
1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10
 '
[296] [297]
Underfull \hbox (badness 1509) in paragraph at lines 19191--19198
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 library \T1/ptm/m/n/10 is called with no \T1
/zi4/m/n/10 package \T1/ptm/m/n/10 or \T1/zi4/m/n/10 help \T1/ptm/m/n/10 ar-gu-
ment, it lists all avail-able pack-ages

Underfull \hbox (badness 1354) in paragraph at lines 19191--19198
\T1/ptm/m/n/10 Use \T1/zi4/m/n/10 .packages(all = TRUE) \T1/ptm/m/n/10 to ob-ta
in just the names of all avail-able pack-ages, and

Underfull \hbox (badness 1014) in paragraph at lines 19207--19212
[]\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi
s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1
0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if
[298] [299] [300] [301] [302] [303] [304] [305] [306] [307] [308] [309]
Underfull \hbox (badness 1264) in paragraph at lines 19938--19943
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
[310] [311] [312] [313] [314] [315] [316] [317] [318] [319] [320]
Underfull \hbox (badness 10000) in paragraph at lines 20692--20694
[]\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n
/10 has the prop-erty that
[321] [322] [323] [324] [325] [326] [327] [328] [329] [330] [331] [332]
[333] [334] [335] [336]
Underfull \hbox (badness 1077) in paragraph at lines 21690--21696
\T1/zi4/m/n/10 / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm/m/n/10 , [][
]$\T1/zi4/m/n/10 http : / / tukaani . org / xz/$[][] \T1/ptm/m/n/10 and [][]$\T
1/zi4/m/n/10 https : / / en . wikipedia .
[337] [338] [339]
Underfull \hbox (badness 1484) in paragraph at lines 21851--21859
\T1/ptm/m/n/10 to al-low more (up to 3Gb). See [][]$\T1/zi4/m/n/10 https : / / 
www . microsoft . com / whdc / system / platform /
[340] [341] [342] [343]
Underfull \hbox (badness 2790) in paragraph at lines 22122--22125
[]\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s
ages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 22122--22125
\T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m
es-sages, so can be sup-pressed by
[344] [345] [346] [347]
Underfull \hbox (badness 1194) in paragraph at lines 22403--22406
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha
n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 .
 It calls
[348] [349] [350] [351]
Underfull \hbox (badness 10000) in paragraph at lines 22609--22615
[]\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 
, \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond-
ing

Underfull \hbox (badness 5862) in paragraph at lines 22609--22615
\T1/ptm/m/n/10 list, i.e., \T1/zi4/m/n/10 names(as.list(env, all.names = TRUE))
 \T1/ptm/m/n/10 which are also given by

Underfull \hbox (badness 10000) in paragraph at lines 22619--22622
[]\T1/ptm/m/n/10 It is pos-si-ble to up-date just part of the names at-tribute 
via the gen-eral rules:

Underfull \hbox (badness 10000) in paragraph at lines 22619--22622
\T1/ptm/m/n/10 see the ex-am-ples. This works be-cause the ex-pres-sion there i
s eval-u-ated as
[352] [353] [354] [355] [356] [357] [358] [359] [360] [361] [362] [363]
[364] [365]
Underfull \hbox (badness 10000) in paragraph at lines 23544--23546
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m
ore ef-fi-cient than
[366] [367] [368] [369]
Underfull \hbox (badness 1199) in paragraph at lines 23771--23777
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 is.numeric \T1/ptm/m/n/
10 re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 if its ar-gu-ment is of [][]mode
[][][] \T1/zi4/m/n/10 "numeric"

Underfull \hbox (badness 2027) in paragraph at lines 23771--23777
\T1/ptm/m/n/10 ([][]type[][][] \T1/zi4/m/n/10 "double" \T1/ptm/m/n/10 or type \
T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 ) and not a fac-tor, and \T1/zi4/m/n/10 F
ALSE \T1/ptm/m/n/10 oth-er-wise. That is,
[370] [371] [372] [373] [374] [375] [376] [377]
Underfull \hbox (badness 1038) in paragraph at lines 24336--24344
[]\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/
10 R \T1/ptm/m/n/10 starts up. Ini-tially

Underfull \hbox (badness 1881) in paragraph at lines 24345--24348
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

Underfull \hbox (badness 6220) in paragraph at lines 24364--24366
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see

[378]
Underfull \hbox (badness 10000) in paragraph at lines 24436--24446
[]\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/zi4/m
/n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to

Underfull \hbox (badness 2142) in paragraph at lines 24447--24453
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr
ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 1968) in paragraph at lines 24460--24465
[]\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p
tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 10000) in paragraph at lines 24470--24472
[]\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v
alue
[379] [380] [381]
Underfull \hbox (badness 10000) in paragraph at lines 24721--24727
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/
n/10 setRepositories[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 24721--24727
\T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "http://bioconductor.org"\T1/p
tm/m/n/10 ' or the Eu-ro-pean mir-ror

Underfull \hbox (badness 10000) in paragraph at lines 24721--24727
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 "http://bioconductor.statistik.tu-dortmund.de"\T
1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 10000) in paragraph at lines 24734--24737
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][
][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10
 and
[382]
Underfull \hbox (badness 2689) in paragraph at lines 24758--24760
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see

Underfull \hbox (badness 10000) in paragraph at lines 24790--24795
[]\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/
10 (and in-di-rectly

Underfull \hbox (badness 1629) in paragraph at lines 24796--24807
\T1/ptm/m/n/10 si-ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi
4/m/n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use an
d

Underfull \hbox (badness 7203) in paragraph at lines 24808--24811
[]\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos
t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/
n/10 and

Underfull \hbox (badness 4084) in paragraph at lines 24818--24830
\T1/ptm/m/n/10 Pos-si-ble val-ues are \T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (t
he de-fault ex-cept un-der a CRAN OS X build),

Underfull \hbox (badness 10000) in paragraph at lines 24818--24830
\T1/zi4/m/n/10 "mac.binary."\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "mac.binary.maveric
ks" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "both" \T1/ptm/m/n/10 (the de-fault for C
RAN

Underfull \hbox (badness 7397) in paragraph at lines 24818--24830
\T1/ptm/m/n/10 OS X builds). Win-dows uses \T1/zi4/m/n/10 "win.binary"\T1/ptm/m
/n/10 . (\T1/zi4/m/n/10 "mac.binary.leopard" \T1/ptm/m/n/10 and

Underfull \hbox (badness 10000) in paragraph at lines 24832--24839
[]\T1/ptm/m/n/10 URLs of the repos-i-to-ries for use by [][]\T1/zi4/m/n/10 upda
te.packages[][][]\T1/ptm/m/n/10 . De-faults to

Underfull \hbox (badness 10000) in paragraph at lines 24832--24839
\T1/zi4/m/n/10 c(CRAN="@CRAN@")\T1/ptm/m/n/10 , a value that causes some util-i
-ties to prompt for a

Underfull \hbox (badness 6380) in paragraph at lines 24832--24839
\T1/ptm/m/n/10 CRAN mir-ror. To avoid this do set the CRAN mir-ror, by some-thi
ng like

Underfull \hbox (badness 1082) in paragraph at lines 24832--24839
\T1/zi4/m/n/10 local({r <- getOption("repos"); r["CRAN"] <- "http://my.local.cr
an";
[383] [384] [385] [386] [387]
Underfull \hbox (badness 10000) in paragraph at lines 25153--25157
[]\T1/ptm/m/n/10 The outer prod-uct of the ar-rays \T1/zi4/m/n/10 X \T1/ptm/m/n
/10 and \T1/zi4/m/n/10 Y \T1/ptm/m/n/10 is the ar-ray \T1/zi4/m/n/10 A \T1/ptm/
m/n/10 with di-men-sion

Underfull \hbox (badness 10000) in paragraph at lines 25153--25157
\T1/zi4/m/n/10 c(dim(X), dim(Y)) \T1/ptm/m/n/10 where el-e-ment \T1/zi4/m/n/10 
A[c(arrayindex.x, arrayindex.y)]
[388] [389] [390] [391] [392]
Underfull \hbox (badness 1735) in paragraph at lines 25471--25475
[]\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 paste() \T1/ptm/m/n/10 co-erces [][]\
T1/zi4/m/n/10 NA_character_[][][]\T1/ptm/m/n/10 , the char-ac-ter miss-ing valu
e, to \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 which
[393] [394] [395] [396] [397] [398] [399] [400] [401] [402]
Underfull \hbox (badness 2726) in paragraph at lines 26030--26033
[]\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di
-cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put,
 see
[403] [404] [405] [406] [407] [408] [409] [410] [411] [412] [413] [414]
[415]
Underfull \hbox (badness 1052) in paragraph at lines 26849--26854
[]\T1/zi4/m/n/10 qr.X \T1/ptm/m/n/10 re-turns $\OML/cmm/b/it/10 X$\T1/ptm/m/n/1
0 , the orig-i-nal ma-trix from which the qr ob-ject was con-structed, pro-vide
d
[416] [417] [418] [419] [420] [421] [422] [423] [424] [425] [426]
Underfull \hbox (badness 1533) in paragraph at lines 27577--27580
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[427] [428]
Underfull \hbox (badness 1163) in paragraph at lines 27739--27749
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\
T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in
[429] [430] [431] [432] [433] [434] [435] [436] [437] [438] [439] [440]
[441] [442] [443] [444] [445] [446] [447] [448] [449] [450] [451] [452]
Underfull \hbox (badness 10000) in paragraph at lines 29241--29245
[]\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n
/10 sup-port `named cap-ture'. If groups are named, e.g.,

Underfull \hbox (badness 1221) in paragraph at lines 29241--29245
\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t
he matches are also re-turned by name.

Underfull \hbox (badness 6188) in paragraph at lines 29263--29265
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p
ubs . opengroup . org / onlinepubs / 9699919799 /
[453] [454] [455] [456] [457] [458] [459] [460] [461]
Underfull \hbox (badness 1655) in paragraph at lines 29808--29810
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm
/m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for
[462] [463] [464] [465] [466] [467] [468] [469] [470] [471] [472]
Underfull \hbox (badness 10000) in paragraph at lines 30476--30480
[]\T1/zi4/m/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my c
ur-rent workspace', i.e.,
[473] [474] [475]
Underfull \hbox (badness 2302) in paragraph at lines 30716--30723
[]\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d
e-fined as $[]$,

Underfull \hbox (badness 2837) in paragraph at lines 30716--30723
\T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no
n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non
-missing

Underfull \hbox (badness 2980) in paragraph at lines 30716--30723
\T1/ptm/m/n/10 val-ues. In the case \T1/zi4/m/n/10 center = TRUE\T1/ptm/m/n/10 
, this is the same as the stan-dard de-vi-a-tion,

Underfull \hbox (badness 2181) in paragraph at lines 30716--30723
\T1/ptm/m/n/10 but in gen-eral it is not. (To scale by the stan-dard de-vi-a-ti
ons with-out cen-ter-ing, use
[476] [477] [478]
Underfull \hbox (badness 2261) in paragraph at lines 30870--30875
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i
t ap-plies to all fields; oth-er-wise, if

Underfull \hbox (badness 10000) in paragraph at lines 30897--30903
[]\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac-
ters
[479]
Underfull \hbox (badness 10000) in paragraph at lines 30973--30978
[]\T1/ptm/m/n/10 Note that since \T1/zi4/m/n/10 sep \T1/ptm/m/n/10 is a sep-a-r
a-tor and not a ter-mi-na-tor, read-ing a file by
[480] [481] [482] [483] [484] [485] [486] [487] [488] [489] [490] [491]
[492] [493] [494] [495] [496] [497] [498] [499] [500] [501] [502] [503]
[504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514] [515]
[516] [517] [518] [519] [520] [521] [522]
Underfull \hbox (badness 1072) in paragraph at lines 33757--33761
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

Underfull \hbox (badness 10000) in paragraph at lines 33762--33766
[]\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/
10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 -
-no-init-file\T1/ptm/m/n/10 ',
[523]
Underfull \hbox (badness 10000) in paragraph at lines 33790--33796
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

Underfull \hbox (badness 10000) in paragraph at lines 33790--33796
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,

Underfull \hbox (badness 1320) in paragraph at lines 33790--33796
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in

Underfull \hbox (badness 3343) in paragraph at lines 33803--33810
\T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment 
vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 33803--33810
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 33803--33810
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[524] [525] [526] [527] [528]
Underfull \hbox (badness 10000) in paragraph at lines 34094--34100
[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form
at \T1/ptm/m/n/10 meth-ods is

Underfull \hbox (badness 1152) in paragraph at lines 34094--34100
\T1/zi4/m/n/10 "%Y-%m-%d %H:%M:%S" \T1/ptm/m/n/10 if any el-e-ment has a time c
om-po-nent which is
[529] [530] [531] [532] [533] [534] [535] [536] [537] [538] [539] [540]
[541] [542] [543] [544] [545] [546] [547] [548] [549] [550] [551] [552]
[553] [554] [555] [556]
Underfull \hbox (badness 3333) in paragraph at lines 35877--35882
[]\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi
s may need to be matched ex-plic-itly: for ex-am-ple
[557] [558] [559] [560] [561] [562] [563] [564] [565] [566]
Underfull \hbox (badness 1472) in paragraph at lines 36497--36500
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee
p their source in-clud-ing com-ments, see
[567] [568] [569] [570] [571] [572] [573] [574] [575] [576] [577]
Underfull \hbox (badness 2671) in paragraph at lines 37159--37162
[]\T1/ptm/m/n/10 levels to re-move for all fac-tors in \T1/zi4/m/n/10 ...\T1/pt
m/m/n/10 . If set to \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 , it im-plies
[578] [579] [580] [581] [582] [583]
Underfull \hbox (badness 10000) in paragraph at lines 37563--37566
[][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$http : / / developer . r-[]project . org /
[584] [585]
Underfull \hbox (badness 10000) in paragraph at lines 37684--37688
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 getTaskCallbackNames
[][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer .
[586]
Underfull \hbox (badness 10000) in paragraph at lines 37746--37750
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[
][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer .
[587] [588] [589] [590] [591] [592] [593] [594] [595] [596] [597] [598]
[599] [600] [601] [602] [603] [604] [605]
Underfull \hbox (badness 1990) in paragraph at lines 39041--39049
[]\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e
r-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 39041--39049
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less
[606] [607] [608] [609] [610]
Underfull \hbox (badness 1515) in paragraph at lines 39313--39318
[]\T1/ptm/m/n/10 On most plat-forms `file' in-cludes sym-bolic links, fi-fos an
d sock-ets. Prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 2.15.0
[611] [612] [613]
Underfull \hbox (badness 1917) in paragraph at lines 39543--39550
[]\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/
ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute
[614] [615] [616] [617] [618] [619] [620] [621] [622]
Underfull \hbox (badness 3668) in paragraph at lines 40128--40130
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[623] [624]
Underfull \hbox (badness 2401) in paragraph at lines 40233--40237
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war
n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[625] [626] [627]
Underfull \hbox (badness 2111) in paragraph at lines 40402--40407
\T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n
ot empty, these are used as col-umn names.

Underfull \hbox (badness 6542) in paragraph at lines 40418--40423
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m
/n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has
 a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is
[628] [629] [630] [631] [632] [633] [634]
Underfull \hbox (badness 10000) in paragraph at lines 40863--40868
[]\T1/ptm/m/n/10 This is a spe-cial case of rank-ing, but as a less gen-eral fu
nc-tion than [][]\T1/zi4/m/n/10 rank[][][]

Underfull \hbox (badness 10000) in paragraph at lines 40863--40868
\T1/ptm/m/n/10 is more suit-able to be made generic. The de-fault method is sim
-i-lar to
[635] [636]
Underfull \hbox (badness 5417) in paragraph at lines 40955--40959
[]\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl
y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[637]
Underfull \hbox (badness 10000) in paragraph at lines 41016--41020
[]\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard
' reg-exps, in-clud-ing el-e-ments named
[638]) (./compiler-pkg.tex
Chapter 2.
[639] [640] [641] [642]) (./datasets-pkg.tex
Chapter 3.

Underfull \hbox (badness 10000) in paragraph at lines 12--14
[]\T1/ptm/m/n/10 This pack-age con-tains a va-ri-ety of datasets. For a com-ple
te list, use
[643] [644] [645] [646] [647] [648] [649] [650] [651] [652] [653] [654]
[655] [656] [657] [658] [659] [660] [661] [662] [663] [664] [665] [666]
[667] [668] [669] [670] [671] [672] [673] [674] [675] [676] [677] [678]
[679] [680] [681] [682] [683] [684] [685] [686] [687] [688] [689]
Underfull \vbox (badness 1515) has occurred while \output is active [690]
[691] [692] [693] [694] [695] [696] [697] [698] [699] [700] [701] [702]
[703] [704] [705] [706] [707] [708] [709]
Underfull \hbox (badness 6658) in paragraph at lines 3940--3942
[]\T1/ptm/m/n/10 For some pho-tos of Methuse-lah Walk see [][]$\T1/zi4/m/n/10 h
ttp : / / www . ltrr . arizona . edu / ~hallman /
[710]
Underfull \vbox (badness 10000) has occurred while \output is active [711]
[712] [713] [714]
Underfull \vbox (badness 10000) has occurred while \output is active [715]
Underfull \vbox (badness 10000) has occurred while \output is active [716]
[717] [718] [719] [720] [721] [722] [723]) (./grDevices-pkg.tex [724]
Chapter 4.
[725] [726] [727] [728] [729] [730] [731] [732] [733] [734] [735] [736]
[737] [738] [739] [740] [741]
Underfull \hbox (badness 5175) in paragraph at lines 1066--1068
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
[742] [743] [744] [745]
Underfull \hbox (badness 1852) in paragraph at lines 1263--1266
[]\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col-
ors that will be used in plot-ting, call-ing
[746] [747] [748]
Underfull \hbox (badness 1490) in paragraph at lines 1469--1474
\T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\
T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/
10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and
[749]
Underfull \hbox (badness 2698) in paragraph at lines 1523--1526
[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 if the de-vice does not sup-port cap-ture,
 oth-er-wise a ma-trix of color names (for
[750]
Underfull \hbox (badness 10000) in paragraph at lines 1592--1596
[]\T1/ptm/m/n/10 logical; if \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , the func-tion 
also re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 when
[751] [752] [753] [754]
Underfull \hbox (badness 1325) in paragraph at lines 1875--1885
\T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 ,
 \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/
10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1
/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 ,
[755] [756]
Underfull \hbox (badness 10000) in paragraph at lines 1980--1982
[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
[757] [758] [759]
Underfull \hbox (badness 6758) in paragraph at lines 2141--2144
[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
[760] [761] [762] [763] [764] [765] [766] [767] [768]
Underfull \hbox (badness 10000) in paragraph at lines 2707--2708

[769] [770] [771] [772] [773] [774] [775]
Underfull \hbox (badness 1152) in paragraph at lines 3145--3147
[]\T1/ptm/m/n/10 A length two in-te-ger vec-tor \T1/zi4/m/n/10 nr, nc \T1/ptm/m
/n/10 giv-ing the num-ber of rows and columns, ful-fill-ing
[776] [777] [778] [779] [780]
Underfull \hbox (badness 2856) in paragraph at lines 3465--3468
[]\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv
e a C in-te-ger for-mat such as

Underfull \hbox (badness 2662) in paragraph at lines 3479--3481
[]\T1/ptm/m/n/10 title string to em-bed as the `\T1/zi4/m/n/10 /Title\T1/ptm/m/
n/10 ' field in the file. De-faults to
[781] [782]
Underfull \hbox (badness 1173) in paragraph at lines 3595--3605
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 paper \T1/ptm/m/n/10 ar-gu-ment sets the `\
T1/zi4/m/n/10 /MediaBox\T1/ptm/m/n/10 ' en-try in the file, which de-faults to 
\T1/zi4/m/n/10 width \T1/ptm/m/n/10 by
[783] [784] [785] [786] [787] [788] [789] [790] [791] [792] [793]
Underfull \hbox (badness 1067) in paragraph at lines 4302--4309
\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-
[794] [795]
Underfull \hbox (badness 3364) in paragraph at lines 4463--4465
[]\T1/ptm/m/n/10 The TIFF spec-i-fi-ca-tion, in-clud-ing ex-ten-sions, at [][]$
\T1/zi4/m/n/10 https : / / partners . adobe . com / public /
[796]
Underfull \hbox (badness 1789) in paragraph at lines 4540--4542
[]\T1/ptm/m/n/10 title string to em-bed as the \T1/zi4/m/n/10 Title \T1/ptm/m/n
/10 com-ment in the file. De-faults to
[797]
Underfull \hbox (badness 1377) in paragraph at lines 4590--4595
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
[798]
Underfull \hbox (badness 2671) in paragraph at lines 4617--4625
\T1/ptm/m/n/10 For use in this way you will prob-a-bly want to use [][]\T1/zi4/
m/n/10 setEPS[][][]() \T1/ptm/m/n/10 to set the de-faults as

Underfull \hbox (badness 1418) in paragraph at lines 4666--4673
\T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4
/m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/
zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm
/m/n/10 ,

Underfull \hbox (badness 2443) in paragraph at lines 4674--4683
\T1/ptm/m/n/10 PostScript de-vice is us-ing URW fonts, you will ob-tain ac-cess
 to more char-ac-ters and

Underfull \hbox (badness 2653) in paragraph at lines 4674--4683
\T1/ptm/m/n/10 more ap-pro-pri-ate met-rics by us-ing these names. To make thes
e eas-ier to re-mem-ber,

Underfull \hbox (badness 1755) in paragraph at lines 4684--4686
[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East 
Asian lan-guages -- see
[799] [800]
Underfull \hbox (badness 1057) in paragraph at lines 4795--4800
[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \
T1/zi4/m/n/10 "rgb"\T1/ptm/m/n/10 ) (which is RGB+gray) and
[801]
Underfull \hbox (badness 7344) in paragraph at lines 4855--4857
[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
[802] [803]
Underfull \hbox (badness 2035) in paragraph at lines 4979--4988
[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

Underfull \hbox (badness 10000) in paragraph at lines 4979--4988
\T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/
n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1
0 ,

Underfull \hbox (badness 10000) in paragraph at lines 4979--4988
\T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino"
 \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG
othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 ,
[804]
Underfull \hbox (badness 10000) in paragraph at lines 5048--5055
[]\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4
/m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu /

Underfull \hbox (badness 2189) in paragraph at lines 5048--5055
\T1/zi4/m/n/10 chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Lunde's CJK
V re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly .
[805] [806] [807]
Underfull \hbox (badness 1546) in paragraph at lines 5186--5194
[]\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo
nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T
1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/
n/10 ,
[808]
Underfull \hbox (badness 1648) in paragraph at lines 5263--5267
[]\T1/ptm/m/n/10 title for the Quartz win-dow (ap-plies to on-screen out-put on
ly), de-fault
[809] [810] [811] [812] [813] [814] [815]
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[]\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red
/green/blue) into HSV space
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[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
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[]\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK 
lan-guages and
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[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1
0 "AvantGarde"\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n
umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of
[831] [832] [833]) (./graphics-pkg.tex [834]
Chapter 5.
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[]\T1/zi4/m/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/p
tm/m/n/10 in-ter-face to the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/pt
m/m/n/10 in
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[][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works 
nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n
/10 ,
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\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
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[]\T1/ptm/m/n/10 vector of back-ground (fill) col-ors for the open plot sym-bol
s given by
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[]\T1/ptm/m/n/10 a func-tion which in-di-cates what should hap-pen when the dat
a con-tain
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[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used: see
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[]\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n
/10 (width, height) \T1/ptm/m/n/10 in user co-or-di-nate units.

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\T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin"
) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that
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[]\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2
:6\T1/ptm/m/n/10 ) cor-re-spond to
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[][] 
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\T1/ptm/m/n/10 avoided (see the Warn-ings sec-tion be-low). Split-screen mode i
s ex-ited by the com-mand
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[]\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d
rawn be-tween the point \T1/zi4/m/n/10 (x0[i], y0[i]) \T1/ptm/m/n/10 and the po
int
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[]\T1/ptm/m/n/10 The main ti-tle (on top) us-ing font and size (char-ac-ter ex-
pan-sion)

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[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font and size \T1/zi4/m/n/10 par
("font.sub") \T1/ptm/m/n/10 and color
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n.units}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8710 \HeaderA{units}{Graphical Units}{units}
                                               [977] [978] [979] [980])
(./grid-pkg.tex
Chapter 6.

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[]\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1
/zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio
n of
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[][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m
/n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10
 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 unit[][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
[1054] [1055] [1056] [1057]
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[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
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\T1/ptm/m/n/10 and to spec-ify the min-i-mum or max-i-mum of a list of unit ob-
jects (e.g.,
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[]\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by
 do-ing some-thing like
[1087] [1088] [1089] [1090]) (./methods-pkg.tex
Chapter 7.
[1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100] [1101]
[1102] [1103] [1104] [1105] [1106] [1107] [1108] [1109] [1110]
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[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \
T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package
"\T1/ptm/m/n/10 , also of class
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[]\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c
an be an ob-ject of class

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\T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1
0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the
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[]\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p
tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o
b-jects of class
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[]\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1
0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re
-turned re-sult is in
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\T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo
ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store
s the
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[]\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na
me of the pack-age (with-out the ex-tra-ne-ous
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[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these 
classes takes spe-cial ar-gu-ments

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[]\T1/ptm/m/n/10 The
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[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "SealedMethodDefinition" \T1/ptm/m/n/
10 is cre-ated by a call to [][]\T1/zi4/m/n/10 setMethod[][][] \T1/ptm/m/n/10 w
ith ar-gu-ment

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[]\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for 
the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar

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\T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T
1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by
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\T1/ptm/m/n/10 names cor-re-spond-ing to some or all of the for-mal ar-gu-ments
. In the pre-vi-ous ex-am-ple,

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\T1/ptm/m/n/10 if se-lect-ing class \T1/zi4/m/n/10 "track" \T1/ptm/m/n/10 for \
T1/zi4/m/n/10 x\T1/ptm/m/n/10 , find-ing that the se-lec-tion was an-other meth
-ods list and

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[]\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10
 the method to use in re-sponse to a
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[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
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[]\T1/ptm/m/n/10 Two op-tional method names are in-ter-preted spe-cially, \T1/z
i4/m/n/10 initialize \T1/ptm/m/n/10 and
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\T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth
od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class
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                                                 [1191]
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[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
[1192] [1193] [1194]
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[]\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, 
a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal
ly
[1195] [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203] [1204] [1205]
[1206] [1207] [1208] [1209] [1210] [1211] [1212] [1213] [1214] [1215] [1216]
[1217] [1218] [1219] [1220] [1221] [1222] [1223] [1224] [1225] [1226] [1227]
[1228]
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[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1229] [1230] [1231] [1232]) (./parallel-pkg.tex
Chapter 8.

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[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4
/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[
][][]: see
[1233] [1234] [1235] [1236] [1237] [1238] [1239] [1240] [1241] [1242] [1243]
[1244] [1245] [1246] [1247] [1248] [1249] [1250] [1251] [1252]
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[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R
andom.seed \T1/ptm/m/n/10 when the
[1253] [1254]) (./splines-pkg.tex
Chapter 9.

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[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
[1255] [1256] [1257] [1258] [1259] [1260] [1261] [1262] [1263] [1264] [1265]
[1266] [1267] [1268] [1269]) (./stats-pkg.tex [1270]
Chapter 10.
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[1282] [1283]
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[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm 
\T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1292] [1293] [1294]
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[]\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov", "lm") \T1/ptm/m/n/
10 or for mul-ti-ple re-sponses of class
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[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
[1306] [1307] [1308] [1309] [1310]
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[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
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[1322] [1323]
Underfull \hbox (badness 2503) in paragraph at lines 3323--3326
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1324] [1325] [1326] [1327] [1328] [1329] [1330] [1331] [1332] [1333] [1334]
[1335] [1336] [1337] [1338] [1339] [1340] [1341] [1342] [1343]
Underfull \hbox (badness 3989) in paragraph at lines 4548--4555
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
[1344] [1345] [1346] [1347] [1348] [1349] [1350] [1351] [1352] [1353]
Underfull \hbox (badness 2556) in paragraph at lines 5149--5152
[]\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/
ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p
tm/m/n/10 . For

Underfull \hbox (badness 2932) in paragraph at lines 5166--5168
[]\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se-
quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is 
given by
[1354] [1355] [1356] [1357]
Underfull \hbox (badness 1142) in paragraph at lines 5407--5419
\T1/ptm/m/n/10 For \T1/zi4/m/n/10 cov()\T1/ptm/m/n/10 , a non-Pearson method is
 un-usual but avail-able for the sake of com-plete-ness.
[1358] [1359]
Underfull \hbox (badness 2503) in paragraph at lines 5546--5550
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1360]
Underfull \hbox (badness 1168) in paragraph at lines 5607--5612
[]\T1/ptm/m/n/10 For Spear-man's test, p-values are com-puted us-ing al-go-rith
m AS 89 for $\OML/cmm/m/it/10 n < \OT1/cmr/m/n/10 1290$ \T1/ptm/m/n/10 and
[1361] [1362] [1363] [1364] [1365] [1366] [1367]
Underfull \hbox (badness 8132) in paragraph at lines 6049--6054
\T1/ptm/m/n/10 then \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is a den-dro-gram of the sa
me graph struc-ture as \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and for each node,
[1368] [1369] [1370] [1371] [1372]
Underfull \hbox (badness 7081) in paragraph at lines 6324--6327
[]\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be
 con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method

Underfull \hbox (badness 10000) in paragraph at lines 6328--6330
[]\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra
m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also
[1373] [1374] [1375] [1376] [1377]
Underfull \vbox (badness 3803) has occurred while \output is active [1378]
[1379] [1380] [1381] [1382] [1383] [1384] [1385]
Underfull \hbox (badness 10000) in paragraph at lines 7136--7139
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T
1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the
[1386] [1387]
Underfull \hbox (badness 10000) in paragraph at lines 7273--7276
[]\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/zi4/m/n/10 ht
tps : / / cran . r-[]project . org / web / views /
[1388] [1389] [1390] [1391]
Underfull \vbox (badness 3803) has occurred while \output is active [1392]
[1393] [1394] [1395] [1396] [1397] [1398] [1399] [1400] [1401] [1402] [1403]
[1404] [1405] [1406] [1407] [1408] [1409] [1410] [1411] [1412]
Underfull \hbox (badness 2626) in paragraph at lines 8771--8774
[]\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/
m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1413]
Underfull \hbox (badness 2503) in paragraph at lines 8871--8875
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1414] [1415] [1416] [1417] [1418]
Overfull \hbox (6.88992pt too wide) in paragraph at lines 9205--9207
[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Fligner-Killeen test of
 homogeneity of variances"\T1/ptm/m/n/10 . 
[1419] [1420] [1421] [1422] [1423] [1424] [1425] [1426] [1427] [1428] [1429]
[1430] [1431] [1432] [1433]
Underfull \hbox (badness 4518) in paragraph at lines 10132--10137
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1434] [1435] [1436] [1437]
Underfull \hbox (badness 2142) in paragraph at lines 10474--10477
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@
[1438]
Underfull \hbox (badness 1253) in paragraph at lines 10493--10496
[]\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][
]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it-
er-a-tion. Hence,
[1439]
Underfull \hbox (badness 1708) in paragraph at lines 10555--10559
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1440] [1441] [1442] [1443] [1444] [1445]
Underfull \hbox (badness 1694) in paragraph at lines 10951--10954
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to

Underfull \hbox (badness 1867) in paragraph at lines 10970--10979
\T1/ptm/m/n/10 in the row case. If ei-ther is miss-ing, as by de-fault, then th
e or-der-ing of the cor-re-
[1446] [1447] [1448] [1449] [1450] [1451] [1452] [1453]pdfTeX warning (ext4): d
estination with the same identifier (name{Rfn.hat}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.11417 \aliasA{hat}{influence.measures}{hat}
                                              [1454] [1455]
Underfull \hbox (badness 1484) in paragraph at lines 11540--11542
[]\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main
ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
[1456] [1457] [1458] [1459] [1460] [1461] [1462] [1463] [1464]
Underfull \hbox (badness 4441) in paragraph at lines 12098--12100
[]\T1/ptm/m/n/10 vector of dif-fer-enc-ing co-ef-fi-cients, so an ARMA model is
 fit-ted to

Underfull \hbox (badness 10000) in paragraph at lines 12105--12107
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa
ult[][][] \T1/ptm/m/n/10 when
[1465] [1466] [1467] [1468] [1469] [1470]
Underfull \hbox (badness 2894) in paragraph at lines 12439--12443
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
[1471] [1472] [1473] [1474] [1475] [1476] [1477] [1478] [1479] [1480] [1481]
Underfull \hbox (badness 4518) in paragraph at lines 13134--13139
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1482] [1483] [1484] [1485] [1486] [1487] [1488] [1489] [1490] [1491]
Underfull \hbox (badness 4518) in paragraph at lines 13781--13786
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1492] [1493]
Underfull \hbox (badness 10000) in paragraph at lines 13919--13923
[]\T1/ptm/m/n/10 Only for the (de-fault) case \T1/zi4/m/n/10 (surface =

Underfull \hbox (badness 1199) in paragraph at lines 13926--13928
[]\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on
ly if \T1/zi4/m/n/10 family \T1/ptm/m/n/10 is
[1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504]
[1505] [1506] [1507] [1508] [1509] [1510] [1511]
Underfull \hbox (badness 2503) in paragraph at lines 14990--14994
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1512] [1513] [1514] [1515] [1516] [1517] [1518] [1519]
Underfull \hbox (badness 1418) in paragraph at lines 15499--15505
[]\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response 
\T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(, "offset") \T1
/ptm/m/n/10 and
[1520] [1521] [1522] [1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530]
[1531] [1532] [1533] [1534] [1535] [1536] [1537] [1538] [1539] [1540] [1541]
[1542] [1543] [1544] [1545]
Underfull \hbox (badness 2359) in paragraph at lines 17123--17125
[]\T1/ptm/m/n/10 Douglas M. Bates and Saikat De-bRoy: David M. Gay for the For-
tran code used by
[1546] [1547]
Underfull \vbox (badness 10000) has occurred while \output is active [1548]
Underfull \vbox (badness 10000) has occurred while \output is active [1549]
[1550] [1551] [1552] [1553] [1554] [1555] [1556] [1557] [1558] [1559] [1560]
[1561]
Underfull \hbox (badness 1377) in paragraph at lines 18034--18039
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

Underfull \hbox (badness 1735) in paragraph at lines 18039--18042
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

Underfull \hbox (badness 1184) in paragraph at lines 18052--18056
\T1/ptm/m/n/10 value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + reltol
) \T1/ptm/m/n/10 at a step. De-faults to

Underfull \hbox (badness 2662) in paragraph at lines 18060--18064
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt
m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \
T1/ptm/m/n/10 meth-ods if
[1562] [1563] [1564]
Underfull \vbox (badness 10000) has occurred while \output is active [1565]
[1566] [1567] [1568] [1569] [1570] [1571]
Underfull \hbox (badness 1337) in paragraph at lines 18676--18679
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1572] [1573] [1574] [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582]
[1583] [1584]
Underfull \hbox (badness 5563) in paragraph at lines 19406--19408
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , add to al-read
y ex-ist-ing plot. Only valid for

Underfull \hbox (badness 1194) in paragraph at lines 19409--19412
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
[1585] [1586] [1587] [1588] [1589] [1590]
Underfull \hbox (badness 2503) in paragraph at lines 19776--19779
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1591]
Underfull \hbox (badness 10000) in paragraph at lines 19803--19805
[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1
/ptm/m/n/10 or
[1592] [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601] [1602]
[1603] [1604] [1605] [1606] [1607]
Underfull \hbox (badness 10000) in paragraph at lines 20803--20809
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][
][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 ,
[1608] [1609] [1610] [1611] [1612] [1613] [1614] [1615] [1616] [1617] [1618]
[1619] [1620] [1621] [1622] [1623] [1624] [1625] [1626] [1627] [1628] [1629]
[1630]
Underfull \hbox (badness 1337) in paragraph at lines 22138--22144
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1631] [1632] [1633] [1634] [1635] [1636] [1637] [1638] [1639] [1640] [1641]
[1642]
Underfull \hbox (badness 10000) in paragraph at lines 22931--22934
[]\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by
[1643] [1644] [1645] [1646] [1647] [1648] [1649] [1650] [1651]
Underfull \hbox (badness 10000) in paragraph at lines 23508--23511
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run
med(x, k) \T1/ptm/m/n/10 sim-ply has
[1652]
Underfull \hbox (badness 3690) in paragraph at lines 23559--23563
[][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's
 end point rule and is called by de-fault from
[1653] [1654] [1655] [1656] [1657] [1658] [1659] [1660]
Underfull \hbox (badness 3439) in paragraph at lines 24029--24035
[][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSasympO
rig[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSbiexp[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 SSfol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSfpl[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 SSgompertz[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 SSlogis[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSmicmen[][][]\T1/ptm/m/n/1
0 ,
[1661] [1662] [1663] [1664] [1665] [1666] [1667] [1668] [1669]
Underfull \hbox (badness 10000) in paragraph at lines 24577--24582
[]\T1/ptm/m/n/10 integer or [][]\T1/zi4/m/n/10 function[][][] \T1/ptm/m/n/10 gi
v-ing the num-ber of knots to use when
[1670] [1671] [1672] [1673] [1674] [1675] [1676] [1677] [1678] [1679] [1680]
[1681] [1682] [1683] [1684]
Underfull \vbox (badness 3803) has occurred while \output is active [1685]
[1686]
Underfull \hbox (badness 3514) in paragraph at lines 25593--25598
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1687]
Underfull \hbox (badness 3514) in paragraph at lines 25655--25660
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1688]
Underfull \hbox (badness 3514) in paragraph at lines 25712--25717
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1689]
Underfull \hbox (badness 3514) in paragraph at lines 25773--25779
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1690] [1691] [1692] [1693]
Underfull \hbox (badness 3514) in paragraph at lines 25986--25991
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion

Underfull \hbox (badness 3514) in paragraph at lines 26042--26047
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1694]
Underfull \hbox (badness 3514) in paragraph at lines 26099--26104
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1695]
Underfull \hbox (badness 3514) in paragraph at lines 26154--26159
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1696] [1697]
Underfull \hbox (badness 6691) in paragraph at lines 26223--26228
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p
tm/m/n/10 . It is the value of the ex-pres-sion
[1698] [1699] [1700] [1701] [1702] [1703] [1704] [1705]
Underfull \hbox (badness 10000) in paragraph at lines 26747--26750
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-

Underfull \hbox (badness 10000) in paragraph at lines 26747--26750
\T1/ptm/m/n/10 trac-tion, which should be odd. If \T1/zi4/m/n/10 NULL\T1/ptm/m/
n/10 , the de-fault,
[1706] [1707] [1708] [1709] [1710] [1711] [1712] [1713] [1714] [1715]
Underfull \hbox (badness 5431) in paragraph at lines 27353--27355
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1716] [1717] [1718] [1719]
Underfull \hbox (badness 5431) in paragraph at lines 27563--27566
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1720] [1721] [1722] [1723] [1724]
Underfull \hbox (badness 1337) in paragraph at lines 27875--27879
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1725] [1726]
Underfull \hbox (badness 10000) in paragraph at lines 27992--27995
[]\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/
10 ; cur-rently ex-cept for \T1/zi4/m/n/10 rt()\T1/ptm/m/n/10 , only for
[1727] [1728] [1729]
Underfull \hbox (badness 1616) in paragraph at lines 28175--28178
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
[1730] [1731] [1732] [1733] [1734] [1735] [1736] [1737] [1738] [1739] [1740]
[1741] [1742] [1743] [1744] [1745] [1746] [1747] [1748]
Underfull \hbox (badness 10000) in paragraph at lines 29302--29306
[]\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z
i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect
[1749] [1750] [1751]
Underfull \vbox (badness 10000) has occurred while \output is active [1752]
[1753] [1754]
Underfull \hbox (badness 1337) in paragraph at lines 29666--29670
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1755] [1756] [1757] [1758] [1759] [1760] [1761] [1762]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1763]
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[]\T1/ptm/m/n/10 an es-ti-mate of the lo-ca-tion pa-ram-e-ter. (Only present if
 ar-gu-ment
[1764] [1765] [1766] [1767] [1768] [1769]
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[]\T1/ptm/m/n/10 There is a \T1/zi4/m/n/10 summary \T1/ptm/m/n/10 method for co
n-tin-gency ta-ble ob-jects cre-ated by \T1/zi4/m/n/10 table \T1/ptm/m/n/10 or
[1770] [1771] [1772]) (./stats4-pkg.tex
Chapter 11.
[1773] [1774] [1775] [1776] [1777] [1778]pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup
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l.407 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                   [1779] [1780] [1781]
[1782]) (./tcltk-pkg.tex
Chapter 12.
[1783] [1784] [1785] [1786] [1787] [1788] [1789]
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[]\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing
 any Tk or Tcl com-mand by sim-ply run-ning
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[][][]\T1/zi4/m/n/10 select.list[][][] \T1/ptm/m/n/10 (a text ver-sion ex-cept 
on Win-dows and the OS X GUI), [][]\T1/zi4/m/n/10 menu[][][] \T1/ptm/m/n/10 (wh
ose
[1803]) (./tools-pkg.tex [1804]
Chapter 13.
[1805]

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[1806]
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[]\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b
e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
[1807] [1808]
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[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types

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\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe
ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

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\T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee
dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 formatMastersthesis\T1/ptm/m/n/10 ,

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\T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm
/m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma
tTechreport \T1/ptm/m/n/10 and
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[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine 
to use. Over-rides any
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[]\T1/ptm/m/n/10 Delete files in the tem-po-rary di-rec-tory? This op-tion is i
g-nored when
[1822]
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\T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe
n-den-cies (de-
[1823]
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[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

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[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a 
pre-vi-ous

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[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing


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\T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z
i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 ,
[1824] [1825] [1826]
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[]\T1/ptm/m/n/10 Re-save PDF files (es-pe-cially vi-gnettes) more com-pactly. S
up-port func-tion for
[1827] [1828] [1829]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of

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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see
[1830] [1831] [1832] [1833]pdfTeX warning (ext4): destination with the same ide
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l.1721 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
                                                   [1834] [1835]
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[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/n/10 TRUE
\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/n/10 De
pendsList \T1/ptm/m/n/10 ob-ject

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\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of
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[]\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t
or of links, as re-turned by
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[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
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[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The

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\T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file
[1869] [1870]
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[]\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/sl/10 TR
UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/sl/10
 DependsList \T1/ptm/m/n/10 ob-ject

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\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
[1871] [1872]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to be used in the `\T
1/zi4/m/sl/10 PACKAGES\T1/ptm/m/n/10 ' and
[1873] [1874] [1875] [1876]) (./utils-pkg.tex
Chapter 14.
[1877]
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ',
[1878] [1879]
Underfull \hbox (badness 1454) in paragraph at lines 197--200
[]\T1/ptm/m/n/10 logical in-di-cat-ing if the search should be case-insensitive
, \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 by de-

Underfull \hbox (badness 1540) in paragraph at lines 213--216
[]\T1/zi4/m/sl/10 find \T1/ptm/m/n/10 is a dif-fer-ent user in-ter-face for the
 same task as \T1/zi4/m/sl/10 apropos\T1/ptm/m/n/10 . How-ever, by de-fault
[1880] [1881] [1882] [1883] [1884] [1885]
Underfull \hbox (badness 10000) in paragraph at lines 543--549
[]\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1
0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 ,

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\T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel
l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the
[1886]
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[]\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to
 se-lect which of the pack-ages on the repos-i-to-

Underfull \hbox (badness 4229) in paragraph at lines 656--662
\T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi
4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as
[1887]
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[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O
S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/
10 "License_is_FOSS"\T1/ptm/m/n/10 ,
[1888] [1889] [1890] [1891] [1892]
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[1894] [1895] [1896] [1897]
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
[1898] [1899] [1900] [1901] [1902] [1903] [1904]
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[]\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th
is func-tion is in-voked for its side ef-fect of up-dat-ing
[1905] [1906]
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[]\T1/ptm/m/n/10 One can in-clude an auto-generated pack-age ci-ta-tion in the 
`\T1/zi4/m/sl/10 CITATION\T1/ptm/m/n/10 ' file via
[1907]
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[]\T1/ptm/m/n/10 A list of keys that have been pre-vi-ously cited, to be used w
hen
[1908] [1909] [1910] [1911]
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sim-pli-fied to
 an [][]\T1/zi4/m/sl/10 array[][][] \T1/ptm/m/n/10 (typ-i-

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[]\T1/ptm/m/n/10 a [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4
/m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m
/n/10 ar-gu-ment above. In the lat-ter case, the iden-tity
[1912] [1913] [1914] [1915] [1916] [1917] [1918] [1919] [1920] [1921] [1922]
[1923] [1924] [1925] [1926]
Underfull \hbox (badness 1412) in paragraph at lines 3235--3239
[]\T1/ptm/m/n/10 The \T1/zi4/m/sl/10 "libcurl" \T1/ptm/m/n/10 and \T1/zi4/m/sl/
10 "wget" \T1/ptm/m/n/10 meth-ods fol-low `\T1/zi4/m/sl/10 http://\T1/ptm/m/n/1
0 ' and `\T1/zi4/m/sl/10 https://\T1/ptm/m/n/10 ' redi-rec-tions: the
[1927]
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[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the \T1/zi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the

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[]\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers 
via en-vi-ron-ment vari-able
[1928] [1929] [1930] [1931] [1932] [1933] [1934] [1935] [1936] [1937] [1938]
[1939] [1940] [1941]pdfTeX warning (ext4): destination with the same identifier
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<to be read again> 
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l.4123 ...mat Unordered and Ordered Lists}{format}
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ation with the same identifier (name{Rfn.format.1}) has been already used, dupl
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l.4123 ...mat Unordered and Ordered Lists}{format}
                                                   [1942] [1943] [1944]
[1945] [1946] [1947] [1948] [1949] [1950] [1951] [1952] [1953] [1954] [1955]
[1956]
Underfull \hbox (badness 1371) in paragraph at lines 5073--5075
[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
[1957]
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[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

Underfull \hbox (badness 2103) in paragraph at lines 5162--5167
\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file
[1958] [1959] [1960]
Underfull \hbox (badness 10000) in paragraph at lines 5335--5344
[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,
[1961]
Underfull \hbox (badness 2150) in paragraph at lines 5398--5401
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See
[1962] [1963]
Underfull \hbox (badness 3118) in paragraph at lines 5535--5537
[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
[1964]
Underfull \hbox (badness 2409) in paragraph at lines 5568--5572
[]\T1/ptm/m/n/10 To in-stall a source pack-age with com-piled code only for the
 sub-architecture used by
[1965]
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[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/sl/10 available.packag
es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able
[1966]
Underfull \hbox (badness 10000) in paragraph at lines 5759--5762
[]\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to
 be passed

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\T1/ptm/m/n/10 to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a source pac
k-age in-stall. E.g.,
[1967]
Underfull \hbox (badness 3219) in paragraph at lines 5832--5839
[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/sl/
10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail-

Underfull \hbox (badness 5175) in paragraph at lines 5832--5839
\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
 are source pack-ages

Underfull \hbox (badness 1342) in paragraph at lines 5832--5839
\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by
[1968]
Underfull \hbox (badness 10000) in paragraph at lines 5912--5917
[][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10
 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/
10 ,
[1969] [1970] [1971] [1972] [1973] [1974] [1975] [1976] [1977] [1978] [1979]
[1980] [1981] [1982] [1983] [1984] [1985] [1986] [1987] [1988]
Underfull \hbox (badness 10000) in paragraph at lines 7124--7126
[]\T1/zi4/m/sl/10 packageVersion() \T1/ptm/m/n/10 is a con-ve-nience short-cut,
 al-low-ing things like

Underfull \hbox (badness 2310) in paragraph at lines 7129--7134
[]\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
 given pack-age is found and can suc-cess-fully be read,
[1989] [1990] [1991] [1992] [1993] [1994] [1995] [1996] [1997]
Underfull \hbox (badness 1789) in paragraph at lines 7679--7681
[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
 more dis-cus-sion of the
[1998] [1999] [2000] [2001] [2002] [2003] [2004] [2005] [2006] [2007] [2008]
[2009]
Underfull \hbox (badness 1097) in paragraph at lines 8504--8507
[]\T1/ptm/m/n/10 The name \T1/zi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b
e used on Win-dows, in which case
[2010] [2011]
Underfull \hbox (badness 3000) in paragraph at lines 8640--8645
[][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 read.t
able[][][]\T1/ptm/m/n/10 ;
[2012] [2013] [2014] [2015] [2016] [2017] [2018] [2019] [2020]
Underfull \hbox (badness 2134) in paragraph at lines 9222--9227
[][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 write.
table[][][]\T1/ptm/m/n/10 ;
[2021] [2022] [2023] [2024] [2025] [2026] [2027]
Underfull \hbox (badness 2469) in paragraph at lines 9655--9659
[]\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia
, The Free En-cy-clo-pe-dia.

Underfull \hbox (badness 3428) in paragraph at lines 9655--9659
[][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / w / index . php ? title
 = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac-
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/n/10 and \T1/zi4/m/n/10 %/% \T1/ptm/m/n/10 in-di-cates in-te-ger di-vi-sion. I
t is guar-an-teed that
[23] [24] [25] [26] [27] [28] [29]
Overfull \hbox (26.88089pt too wide) in paragraph at lines 1849--1849
 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 
[30] [31] [32]
Underfull \hbox (badness 10000) in paragraph at lines 2034--2036
[]\T1/ptm/m/n/10 a date-time ob-ject, or some-thing which can be co-erced by
[33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47]
[48] [49] [50] [51] [52] [53] [54] [55]
Underfull \hbox (badness 10000) in paragraph at lines 3532--3534
[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
-ited by set-ting
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[71] [72] [73] [74]
Underfull \hbox (badness 2521) in paragraph at lines 4728--4730
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
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[90] [91] [92] [93]
Underfull \hbox (badness 2096) in paragraph at lines 5945--5958
[]\T1/ptm/m/n/10 New restarts for \T1/zi4/m/n/10 withRestarts \T1/ptm/m/n/10 ca
n be spec-i-fied in sev-eral ways. The sim-plest is in
[94] [95] [96]
Overfull \hbox (58.35893pt too wide) in paragraph at lines 6146--6149
[]\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa
ult", "internal", "wininet", "libcurl")\T1/ptm/m/n/10 :
[97] [98]
Underfull \hbox (badness 10000) in paragraph at lines 6290--6293
[]\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo
st gen-eral form (from RFC1738) is
[99] [100]
Underfull \hbox (badness 1442) in paragraph at lines 6451--6457
[]\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \
T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re-
move a

Underfull \hbox (badness 1248) in paragraph at lines 6451--6457
\T1/ptm/m/n/10 Byte Or-der Mark if present (which it of-ten is for files and we
b-pages gen-er-ated by Mi-

Underfull \hbox (badness 2080) in paragraph at lines 6451--6457
\T1/ptm/m/n/10 crosoft ap-pli-ca-tions). If a BOM is re-quired (it is not rec-o
m-mended) when writ-ing it
[101]
Underfull \hbox (badness 3568) in paragraph at lines 6512--6519
\T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z
i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as
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Underfull \vbox (badness 10000) has occurred while \output is active [104]
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Underfull \hbox (badness 2096) in paragraph at lines 7149--7153
\T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https
 : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$
[][]\T1/ptm/m/n/10 .
[112]
Underfull \hbox (badness 4595) in paragraph at lines 7206--7209
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h
igh-est, for
[113]
Underfull \hbox (badness 3000) in paragraph at lines 7242--7244
[]\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0, \T1/zi4/m/n/10 
getOption("OutDec") \T1/ptm/m/n/10 is con-sulted when la-bels are con-structed 
for

Underfull \hbox (badness 2351) in paragraph at lines 7267--7270
[][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c
ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][
]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T
1/ptm/m/n/10 ,
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Underfull \hbox (badness 10000) in paragraph at lines 7517--7528
[]\T1/zi4/m/n/10 data.frame \T1/ptm/m/n/10 con-verts each of its ar-gu-ments to
 a data frame by call-ing
[118]
Underfull \hbox (badness 4479) in paragraph at lines 7589--7598
[][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 
, [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[]
[][] \T1/ptm/m/n/10 (for the col-umn names),

Underfull \hbox (badness 2469) in paragraph at lines 7589--7598
[][]\T1/zi4/m/n/10 [.data.frame[][][] \T1/ptm/m/n/10 for sub-set-ting meth-ods,
 [][]\T1/zi4/m/n/10 Math.data.frame[][][] \T1/ptm/m/n/10 etc, about \T1/ptm/m/i
t/10 Group \T1/ptm/m/n/10 meth-ods for
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[143]
Underfull \hbox (badness 1394) in paragraph at lines 9200--9205
[]\T1/ptm/m/n/10 Subtraction of date-time ob-jects gives an ob-ject of this cla
ss, by call-ing \T1/zi4/m/n/10 difftime \T1/ptm/m/n/10 with
[144] [145] [146] [147] [148]
Underfull \hbox (badness 1052) in paragraph at lines 9537--9542
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 dontCheck \T1/ptm/m/n/10 func-tion is the s
ame as [][]\T1/zi4/m/n/10 identity[][][]\T1/ptm/m/n/10 , but is in-ter-preted b
y \T1/zi4/m/n/10 R CMD check

Underfull \hbox (badness 1231) in paragraph at lines 9537--9542
\T1/ptm/m/n/10 code anal-y-sis as a di-rec-tive to sup-press check-ing of \T1/z
i4/m/n/10 x\T1/ptm/m/n/10 . Cur-rently this is only used by
[149] [150]
Underfull \hbox (badness 1735) in paragraph at lines 9675--9679
\T1/zi4/m/n/10 754-[]2008$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 https : / / 
en . wikipedia . org / wiki / Double _ precision$[][]\T1/ptm/m/n/10 , [][]$\T1/
zi4/m/n/10 https : / / en . wikipedia .
[151] [152] [153] [154] [155] [156]
Underfull \hbox (badness 2150) in paragraph at lines 10079--10082
[]\T1/ptm/m/n/10 logical in-di-cat-ing if du-pli-ca-tion should be con-sid-ered
 from the re-verse
[157]
Underfull \hbox (badness 6396) in paragraph at lines 10093--10101
[]\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len
t method def-i-ni-tions for

Underfull \hbox (badness 2409) in paragraph at lines 10134--10141
[]\T1/ptm/m/n/10 Except for fac-tors, log-i-cal and raw vec-tors the de-fault \
T1/zi4/m/n/10 nmax = NA \T1/ptm/m/n/10 is equiv-a-lent to
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[170] [171] [172] [173]
Underfull \hbox (badness 4569) in paragraph at lines 11178--11182
[]\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been
 passed as an ar-gu-ment

Underfull \hbox (badness 2401) in paragraph at lines 11178--11182
\T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller'
s en-vi-ron-ment, i.e., one needs
[174] [175] [176] [177] [178] [179] [180] [181]
Underfull \hbox (badness 2698) in paragraph at lines 11754--11763
[]\T1/ptm/m/n/10 Both \T1/zi4/m/n/10 $ \T1/ptm/m/n/10 and \T1/zi4/m/n/10 [[ \T1
/ptm/m/n/10 can be ap-plied to en-vi-ron-ments. Only char-ac-ter in-dices are a
l-lowed

Underfull \hbox (badness 4341) in paragraph at lines 11754--11763
\T1/ptm/m/n/10 and no par-tial match-ing is done. The se-man-tics of these op-e
r-a-tions are those of
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Underfull \hbox (badness 6236) in paragraph at lines 12398--12401
[]\T1/ptm/m/n/10 For \T1/zi4/m/n/10 iconv \T1/ptm/m/n/10 this will give the im-
ple-men-ta-tion as well as the ver-sion, for ex-am-ple
[192] [193] [194] [195] [196] [197]
Underfull \hbox (badness 2253) in paragraph at lines 12776--12778
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
[198]
Underfull \hbox (badness 1565) in paragraph at lines 12847--12851
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo
lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi
le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/
10 , and
[199]
Underfull \hbox (badness 10000) in paragraph at lines 12891--12893
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m
/n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with
[200] [201]
Underfull \hbox (badness 1466) in paragraph at lines 13032--13035
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/
zi4/m/n/10 file.copy \T1/ptm/m/n/10 and
[202] [203]
Underfull \hbox (badness 10000) in paragraph at lines 13140--13144
[][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac
cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [
][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/
zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 13151--13154
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik
i /
[204] [205] [206] [207]
Underfull \hbox (badness 3965) in paragraph at lines 13403--13407
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
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Underfull \hbox (badness 4429) in paragraph at lines 14133--14136
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
\T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for
[219]
Underfull \hbox (badness 10000) in paragraph at lines 14225--14227
[]\T1/ptm/m/n/10 If you set \T1/zi4/m/n/10 format \T1/ptm/m/n/10 it over-rides 
the set-ting of \T1/zi4/m/n/10 mode\T1/ptm/m/n/10 , so

Underfull \hbox (badness 10000) in paragraph at lines 14231--14235
[]\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b
ers on the dec-i-mal point, so
[220]
Underfull \hbox (badness 10000) in paragraph at lines 14273--14277
[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in
 \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt
m/m/n/10 3.2.0: for use

Underfull \hbox (badness 4156) in paragraph at lines 14273--14277
\T1/ptm/m/n/10 within [][]\T1/zi4/m/n/10 print[][][] \T1/ptm/m/n/10 meth-ods in
 pack-ages which might be used with ear-lier ver-sions: use
[221]
Underfull \vbox (badness 3803) has occurred while \output is active [222]
[223] [224] [225] [226] [227] [228] [229]
Underfull \hbox (badness 2452) in paragraph at lines 14853--14857
[]\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m
ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-

Underfull \hbox (badness 1147) in paragraph at lines 14853--14857
\T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to
 the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_
WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and
[230] [231] [232]
Underfull \hbox (badness 1092) in paragraph at lines 15026--15031
[][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t
he DLL has been loaded us-ing
[233] [234] [235] [236]
Underfull \hbox (badness 6741) in paragraph at lines 15274--15278
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \
T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10
 ,
[237] [238] [239] [240]
Underfull \hbox (badness 1867) in paragraph at lines 15580--15587
[]\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][]
[] (or char-ac-ter string for
[241] [242] [243] [244]
Underfull \vbox (badness 10000) has occurred while \output is active [245]
[246]
Underfull \hbox (badness 3679) in paragraph at lines 15960--15962
[]\T1/ptm/m/n/10 The TRE li-brary of Ville Lau-rikari ([][]$\T1/zi4/m/n/10 http
 : / / laurikari . net / tre/$[][]\T1/ptm/m/n/10 ) is used ex-cept for
[247] [248] [249] [250] [251] [252] [253]
Underfull \hbox (badness 1478) in paragraph at lines 16440--16443
[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
[254] [255] [256] [257]
Underfull \hbox (badness 10000) in paragraph at lines 16693--16695
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 http : / / www
 . unicode . org / reports / tr35 /
[258] [259] [260] [261] [262] [263] [264] [265] [266]
Underfull \hbox (badness 1442) in paragraph at lines 17256--17258
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see
[267]
Underfull \hbox (badness 2452) in paragraph at lines 17348--17364
[][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c
omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 ,
 [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi
cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\
T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 ,
[268] [269] [270] [271] [272] [273] [274]
Underfull \hbox (badness 1248) in paragraph at lines 17756--17759
[]\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type
s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n
/10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/
m/n/10 ,
[275] [276] [277] [278]
Underfull \hbox (badness 4739) in paragraph at lines 18012--18014
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
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[291] [292] [293] [294]
Underfull \hbox (badness 1360) in paragraph at lines 18960--18965
\T1/zi4/m/n/10 "none"\T1/ptm/m/n/10 . It is in-tended for the ver-sion of OpenS
SL used, but not all

Underfull \hbox (badness 10000) in paragraph at lines 18983--18989
[][][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / sslcerts . html$[][]
 \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs /

Underfull \hbox (badness 1127) in paragraph at lines 18983--18989
\T1/zi4/m/n/10 ssl-[]compared . html$[][] \T1/ptm/m/n/10 for more de-tails on S
SL ver-sions. Nor-mally \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 used with \T1/phv
/m/n/10 R
[295]
Underfull \hbox (badness 10000) in paragraph at lines 19056--19060
[]\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an
d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory

Underfull \hbox (badness 2460) in paragraph at lines 19056--19060
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/
10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T
1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10
 '
[296] [297]
Underfull \hbox (badness 1509) in paragraph at lines 19191--19198
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 library \T1/ptm/m/n/10 is called with no \T1
/zi4/m/n/10 package \T1/ptm/m/n/10 or \T1/zi4/m/n/10 help \T1/ptm/m/n/10 ar-gu-
ment, it lists all avail-able pack-ages

Underfull \hbox (badness 1354) in paragraph at lines 19191--19198
\T1/ptm/m/n/10 Use \T1/zi4/m/n/10 .packages(all = TRUE) \T1/ptm/m/n/10 to ob-ta
in just the names of all avail-able pack-ages, and

Underfull \hbox (badness 1014) in paragraph at lines 19207--19212
[]\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi
s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1
0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if
[298] [299] [300] [301] [302] [303] [304] [305] [306] [307] [308] [309]
Underfull \hbox (badness 1264) in paragraph at lines 19938--19943
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
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Underfull \hbox (badness 10000) in paragraph at lines 20692--20694
[]\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n
/10 has the prop-erty that
[321] [322] [323] [324] [325] [326] [327] [328] [329] [330] [331] [332]
[333] [334] [335] [336]
Underfull \hbox (badness 1077) in paragraph at lines 21690--21696
\T1/zi4/m/n/10 / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm/m/n/10 , [][
]$\T1/zi4/m/n/10 http : / / tukaani . org / xz/$[][] \T1/ptm/m/n/10 and [][]$\T
1/zi4/m/n/10 https : / / en . wikipedia .
[337] [338] [339]
Underfull \hbox (badness 1484) in paragraph at lines 21851--21859
\T1/ptm/m/n/10 to al-low more (up to 3Gb). See [][]$\T1/zi4/m/n/10 https : / / 
www . microsoft . com / whdc / system / platform /
[340] [341] [342] [343]
Underfull \hbox (badness 2790) in paragraph at lines 22122--22125
[]\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s
ages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 22122--22125
\T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m
es-sages, so can be sup-pressed by
[344] [345] [346] [347]
Underfull \hbox (badness 1194) in paragraph at lines 22403--22406
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha
n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 .
 It calls
[348] [349] [350] [351]
Underfull \hbox (badness 10000) in paragraph at lines 22609--22615
[]\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 
, \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond-
ing

Underfull \hbox (badness 5862) in paragraph at lines 22609--22615
\T1/ptm/m/n/10 list, i.e., \T1/zi4/m/n/10 names(as.list(env, all.names = TRUE))
 \T1/ptm/m/n/10 which are also given by

Underfull \hbox (badness 10000) in paragraph at lines 22619--22622
[]\T1/ptm/m/n/10 It is pos-si-ble to up-date just part of the names at-tribute 
via the gen-eral rules:

Underfull \hbox (badness 10000) in paragraph at lines 22619--22622
\T1/ptm/m/n/10 see the ex-am-ples. This works be-cause the ex-pres-sion there i
s eval-u-ated as
[352] [353] [354] [355] [356] [357] [358] [359] [360] [361] [362] [363]
[364] [365]
Underfull \hbox (badness 10000) in paragraph at lines 23544--23546
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m
ore ef-fi-cient than
[366] [367] [368] [369]
Underfull \hbox (badness 1199) in paragraph at lines 23771--23777
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 is.numeric \T1/ptm/m/n/
10 re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 if its ar-gu-ment is of [][]mode
[][][] \T1/zi4/m/n/10 "numeric"

Underfull \hbox (badness 2027) in paragraph at lines 23771--23777
\T1/ptm/m/n/10 ([][]type[][][] \T1/zi4/m/n/10 "double" \T1/ptm/m/n/10 or type \
T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 ) and not a fac-tor, and \T1/zi4/m/n/10 F
ALSE \T1/ptm/m/n/10 oth-er-wise. That is,
[370] [371] [372] [373] [374] [375] [376] [377]
Underfull \hbox (badness 1038) in paragraph at lines 24336--24344
[]\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/
10 R \T1/ptm/m/n/10 starts up. Ini-tially

Underfull \hbox (badness 1881) in paragraph at lines 24345--24348
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

Underfull \hbox (badness 6220) in paragraph at lines 24364--24366
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see

[378]
Underfull \hbox (badness 10000) in paragraph at lines 24436--24446
[]\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/zi4/m
/n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to

Underfull \hbox (badness 2142) in paragraph at lines 24447--24453
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr
ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 1968) in paragraph at lines 24460--24465
[]\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p
tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 10000) in paragraph at lines 24470--24472
[]\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v
alue
[379] [380] [381]
Underfull \hbox (badness 10000) in paragraph at lines 24721--24727
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/
n/10 setRepositories[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 24721--24727
\T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "http://bioconductor.org"\T1/p
tm/m/n/10 ' or the Eu-ro-pean mir-ror

Underfull \hbox (badness 10000) in paragraph at lines 24721--24727
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 "http://bioconductor.statistik.tu-dortmund.de"\T
1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 10000) in paragraph at lines 24734--24737
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][
][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10
 and
[382]
Underfull \hbox (badness 2689) in paragraph at lines 24758--24760
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see

Underfull \hbox (badness 10000) in paragraph at lines 24790--24795
[]\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/
10 (and in-di-rectly

Underfull \hbox (badness 1629) in paragraph at lines 24796--24807
\T1/ptm/m/n/10 si-ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi
4/m/n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use an
d

Underfull \hbox (badness 7203) in paragraph at lines 24808--24811
[]\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos
t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/
n/10 and

Underfull \hbox (badness 4084) in paragraph at lines 24818--24830
\T1/ptm/m/n/10 Pos-si-ble val-ues are \T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (t
he de-fault ex-cept un-der a CRAN OS X build),

Underfull \hbox (badness 10000) in paragraph at lines 24818--24830
\T1/zi4/m/n/10 "mac.binary."\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "mac.binary.maveric
ks" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "both" \T1/ptm/m/n/10 (the de-fault for C
RAN

Underfull \hbox (badness 7397) in paragraph at lines 24818--24830
\T1/ptm/m/n/10 OS X builds). Win-dows uses \T1/zi4/m/n/10 "win.binary"\T1/ptm/m
/n/10 . (\T1/zi4/m/n/10 "mac.binary.leopard" \T1/ptm/m/n/10 and

Underfull \hbox (badness 10000) in paragraph at lines 24832--24839
[]\T1/ptm/m/n/10 URLs of the repos-i-to-ries for use by [][]\T1/zi4/m/n/10 upda
te.packages[][][]\T1/ptm/m/n/10 . De-faults to

Underfull \hbox (badness 10000) in paragraph at lines 24832--24839
\T1/zi4/m/n/10 c(CRAN="@CRAN@")\T1/ptm/m/n/10 , a value that causes some util-i
-ties to prompt for a

Underfull \hbox (badness 6380) in paragraph at lines 24832--24839
\T1/ptm/m/n/10 CRAN mir-ror. To avoid this do set the CRAN mir-ror, by some-thi
ng like

Underfull \hbox (badness 1082) in paragraph at lines 24832--24839
\T1/zi4/m/n/10 local({r <- getOption("repos"); r["CRAN"] <- "http://my.local.cr
an";
[383] [384] [385] [386] [387]
Underfull \hbox (badness 10000) in paragraph at lines 25153--25157
[]\T1/ptm/m/n/10 The outer prod-uct of the ar-rays \T1/zi4/m/n/10 X \T1/ptm/m/n
/10 and \T1/zi4/m/n/10 Y \T1/ptm/m/n/10 is the ar-ray \T1/zi4/m/n/10 A \T1/ptm/
m/n/10 with di-men-sion

Underfull \hbox (badness 10000) in paragraph at lines 25153--25157
\T1/zi4/m/n/10 c(dim(X), dim(Y)) \T1/ptm/m/n/10 where el-e-ment \T1/zi4/m/n/10 
A[c(arrayindex.x, arrayindex.y)]
[388] [389] [390] [391] [392]
Underfull \hbox (badness 1735) in paragraph at lines 25471--25475
[]\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 paste() \T1/ptm/m/n/10 co-erces [][]\
T1/zi4/m/n/10 NA_character_[][][]\T1/ptm/m/n/10 , the char-ac-ter miss-ing valu
e, to \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 which
[393] [394] [395] [396] [397] [398] [399] [400] [401] [402]
Underfull \hbox (badness 2726) in paragraph at lines 26030--26033
[]\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di
-cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put,
 see
[403] [404] [405] [406] [407] [408] [409] [410] [411] [412] [413] [414]
[415]
Underfull \hbox (badness 1052) in paragraph at lines 26849--26854
[]\T1/zi4/m/n/10 qr.X \T1/ptm/m/n/10 re-turns $\OML/cmm/b/it/10 X$\T1/ptm/m/n/1
0 , the orig-i-nal ma-trix from which the qr ob-ject was con-structed, pro-vide
d
[416] [417] [418] [419] [420] [421] [422] [423] [424] [425] [426]
Underfull \hbox (badness 1533) in paragraph at lines 27577--27580
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[427] [428]
Underfull \hbox (badness 1163) in paragraph at lines 27739--27749
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\
T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in
[429] [430] [431] [432] [433] [434] [435] [436] [437] [438] [439] [440]
[441] [442] [443] [444] [445] [446] [447] [448] [449] [450] [451] [452]
Underfull \hbox (badness 10000) in paragraph at lines 29241--29245
[]\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n
/10 sup-port `named cap-ture'. If groups are named, e.g.,

Underfull \hbox (badness 1221) in paragraph at lines 29241--29245
\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t
he matches are also re-turned by name.

Underfull \hbox (badness 6188) in paragraph at lines 29263--29265
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p
ubs . opengroup . org / onlinepubs / 9699919799 /
[453] [454] [455] [456] [457] [458] [459] [460] [461]
Underfull \hbox (badness 1655) in paragraph at lines 29808--29810
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm
/m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for
[462] [463] [464] [465] [466] [467] [468] [469] [470] [471] [472]
Underfull \hbox (badness 10000) in paragraph at lines 30476--30480
[]\T1/zi4/m/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my c
ur-rent workspace', i.e.,
[473] [474] [475]
Underfull \hbox (badness 2302) in paragraph at lines 30716--30723
[]\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d
e-fined as $[]$,

Underfull \hbox (badness 2837) in paragraph at lines 30716--30723
\T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no
n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non
-missing

Underfull \hbox (badness 2980) in paragraph at lines 30716--30723
\T1/ptm/m/n/10 val-ues. In the case \T1/zi4/m/n/10 center = TRUE\T1/ptm/m/n/10 
, this is the same as the stan-dard de-vi-a-tion,

Underfull \hbox (badness 2181) in paragraph at lines 30716--30723
\T1/ptm/m/n/10 but in gen-eral it is not. (To scale by the stan-dard de-vi-a-ti
ons with-out cen-ter-ing, use
[476] [477] [478]
Underfull \hbox (badness 2261) in paragraph at lines 30870--30875
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i
t ap-plies to all fields; oth-er-wise, if

Underfull \hbox (badness 10000) in paragraph at lines 30897--30903
[]\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac-
ters
[479]
Underfull \hbox (badness 10000) in paragraph at lines 30973--30978
[]\T1/ptm/m/n/10 Note that since \T1/zi4/m/n/10 sep \T1/ptm/m/n/10 is a sep-a-r
a-tor and not a ter-mi-na-tor, read-ing a file by
[480] [481] [482] [483] [484] [485] [486] [487] [488] [489] [490] [491]
[492] [493] [494] [495] [496] [497] [498] [499] [500] [501] [502] [503]
[504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514] [515]
[516] [517] [518] [519] [520] [521] [522]
Underfull \hbox (badness 1072) in paragraph at lines 33757--33761
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

Underfull \hbox (badness 10000) in paragraph at lines 33762--33766
[]\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/
10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 -
-no-init-file\T1/ptm/m/n/10 ',
[523]
Underfull \hbox (badness 10000) in paragraph at lines 33790--33796
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

Underfull \hbox (badness 10000) in paragraph at lines 33790--33796
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,

Underfull \hbox (badness 1320) in paragraph at lines 33790--33796
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in

Underfull \hbox (badness 3343) in paragraph at lines 33803--33810
\T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment 
vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 33803--33810
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 33803--33810
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[524] [525] [526] [527] [528]
Underfull \hbox (badness 10000) in paragraph at lines 34094--34100
[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form
at \T1/ptm/m/n/10 meth-ods is

Underfull \hbox (badness 1152) in paragraph at lines 34094--34100
\T1/zi4/m/n/10 "%Y-%m-%d %H:%M:%S" \T1/ptm/m/n/10 if any el-e-ment has a time c
om-po-nent which is
[529] [530] [531] [532] [533] [534] [535] [536] [537] [538] [539] [540]
[541] [542] [543] [544] [545] [546] [547] [548] [549] [550] [551] [552]
[553] [554] [555] [556]
Underfull \hbox (badness 3333) in paragraph at lines 35877--35882
[]\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi
s may need to be matched ex-plic-itly: for ex-am-ple
[557] [558] [559] [560] [561] [562] [563] [564] [565] [566]
Underfull \hbox (badness 1472) in paragraph at lines 36497--36500
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee
p their source in-clud-ing com-ments, see
[567] [568] [569] [570] [571] [572] [573] [574] [575] [576] [577]
Underfull \hbox (badness 2671) in paragraph at lines 37159--37162
[]\T1/ptm/m/n/10 levels to re-move for all fac-tors in \T1/zi4/m/n/10 ...\T1/pt
m/m/n/10 . If set to \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 , it im-plies
[578] [579] [580] [581] [582] [583]
Underfull \hbox (badness 10000) in paragraph at lines 37563--37566
[][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$http : / / developer . r-[]project . org /
[584] [585]
Underfull \hbox (badness 10000) in paragraph at lines 37684--37688
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 getTaskCallbackNames
[][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer .
[586]
Underfull \hbox (badness 10000) in paragraph at lines 37746--37750
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[
][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer .
[587] [588] [589] [590] [591] [592] [593] [594] [595] [596] [597] [598]
[599] [600] [601] [602] [603] [604] [605]
Underfull \hbox (badness 1990) in paragraph at lines 39041--39049
[]\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e
r-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 39041--39049
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less
[606] [607] [608] [609] [610]
Underfull \hbox (badness 1515) in paragraph at lines 39313--39318
[]\T1/ptm/m/n/10 On most plat-forms `file' in-cludes sym-bolic links, fi-fos an
d sock-ets. Prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 2.15.0
[611] [612] [613]
Underfull \hbox (badness 1917) in paragraph at lines 39543--39550
[]\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/
ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute
[614] [615] [616] [617] [618] [619] [620] [621] [622]
Underfull \hbox (badness 3668) in paragraph at lines 40128--40130
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[623] [624]
Underfull \hbox (badness 2401) in paragraph at lines 40233--40237
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war
n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[625] [626] [627]
Underfull \hbox (badness 2111) in paragraph at lines 40402--40407
\T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n
ot empty, these are used as col-umn names.

Underfull \hbox (badness 6542) in paragraph at lines 40418--40423
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m
/n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has
 a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is
[628] [629] [630] [631] [632] [633] [634]
Underfull \hbox (badness 10000) in paragraph at lines 40863--40868
[]\T1/ptm/m/n/10 This is a spe-cial case of rank-ing, but as a less gen-eral fu
nc-tion than [][]\T1/zi4/m/n/10 rank[][][]

Underfull \hbox (badness 10000) in paragraph at lines 40863--40868
\T1/ptm/m/n/10 is more suit-able to be made generic. The de-fault method is sim
-i-lar to
[635] [636]
Underfull \hbox (badness 5417) in paragraph at lines 40955--40959
[]\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl
y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[637]
Underfull \hbox (badness 10000) in paragraph at lines 41016--41020
[]\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard
' reg-exps, in-clud-ing el-e-ments named
[638]) (./compiler-pkg.tex
Chapter 2.
[639] [640] [641] [642]) (./datasets-pkg.tex
Chapter 3.

Underfull \hbox (badness 10000) in paragraph at lines 12--14
[]\T1/ptm/m/n/10 This pack-age con-tains a va-ri-ety of datasets. For a com-ple
te list, use
[643] [644] [645] [646] [647] [648] [649] [650] [651] [652] [653] [654]
[655] [656] [657] [658] [659] [660] [661] [662] [663] [664] [665] [666]
[667] [668] [669] [670] [671] [672] [673] [674] [675] [676] [677] [678]
[679] [680] [681] [682] [683] [684] [685] [686] [687] [688] [689]
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Underfull \hbox (badness 6658) in paragraph at lines 3940--3942
[]\T1/ptm/m/n/10 For some pho-tos of Methuse-lah Walk see [][]$\T1/zi4/m/n/10 h
ttp : / / www . ltrr . arizona . edu / ~hallman /
[710]
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[712] [713] [714]
Underfull \vbox (badness 10000) has occurred while \output is active [715]
Underfull \vbox (badness 10000) has occurred while \output is active [716]
[717] [718] [719] [720] [721] [722] [723]) (./grDevices-pkg.tex [724]
Chapter 4.
[725] [726] [727] [728] [729] [730] [731] [732] [733] [734] [735] [736]
[737] [738] [739] [740] [741]
Underfull \hbox (badness 5175) in paragraph at lines 1066--1068
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
[742] [743] [744] [745]
Underfull \hbox (badness 1852) in paragraph at lines 1263--1266
[]\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col-
ors that will be used in plot-ting, call-ing
[746] [747] [748]
Underfull \hbox (badness 1490) in paragraph at lines 1469--1474
\T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\
T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/
10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and
[749]
Underfull \hbox (badness 2698) in paragraph at lines 1523--1526
[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 if the de-vice does not sup-port cap-ture,
 oth-er-wise a ma-trix of color names (for
[750]
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[]\T1/ptm/m/n/10 logical; if \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , the func-tion 
also re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 when
[751] [752] [753] [754]
Underfull \hbox (badness 1325) in paragraph at lines 1875--1885
\T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 ,
 \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/
10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1
/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 ,
[755] [756]
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[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
[757] [758] [759]
Underfull \hbox (badness 6758) in paragraph at lines 2141--2144
[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
[760] [761] [762] [763] [764] [765] [766] [767] [768]
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Underfull \hbox (badness 1152) in paragraph at lines 3145--3147
[]\T1/ptm/m/n/10 A length two in-te-ger vec-tor \T1/zi4/m/n/10 nr, nc \T1/ptm/m
/n/10 giv-ing the num-ber of rows and columns, ful-fill-ing
[776] [777] [778] [779] [780]
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[]\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv
e a C in-te-ger for-mat such as

Underfull \hbox (badness 2662) in paragraph at lines 3479--3481
[]\T1/ptm/m/n/10 title string to em-bed as the `\T1/zi4/m/n/10 /Title\T1/ptm/m/
n/10 ' field in the file. De-faults to
[781] [782]
Underfull \hbox (badness 1173) in paragraph at lines 3595--3605
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 paper \T1/ptm/m/n/10 ar-gu-ment sets the `\
T1/zi4/m/n/10 /MediaBox\T1/ptm/m/n/10 ' en-try in the file, which de-faults to 
\T1/zi4/m/n/10 width \T1/ptm/m/n/10 by
[783] [784] [785] [786] [787] [788] [789] [790] [791] [792] [793]
Underfull \hbox (badness 1067) in paragraph at lines 4302--4309
\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-
[794] [795]
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[]\T1/ptm/m/n/10 The TIFF spec-i-fi-ca-tion, in-clud-ing ex-ten-sions, at [][]$
\T1/zi4/m/n/10 https : / / partners . adobe . com / public /
[796]
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[]\T1/ptm/m/n/10 title string to em-bed as the \T1/zi4/m/n/10 Title \T1/ptm/m/n
/10 com-ment in the file. De-faults to
[797]
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[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
[798]
Underfull \hbox (badness 2671) in paragraph at lines 4617--4625
\T1/ptm/m/n/10 For use in this way you will prob-a-bly want to use [][]\T1/zi4/
m/n/10 setEPS[][][]() \T1/ptm/m/n/10 to set the de-faults as

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\T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4
/m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/
zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm
/m/n/10 ,

Underfull \hbox (badness 2443) in paragraph at lines 4674--4683
\T1/ptm/m/n/10 PostScript de-vice is us-ing URW fonts, you will ob-tain ac-cess
 to more char-ac-ters and

Underfull \hbox (badness 2653) in paragraph at lines 4674--4683
\T1/ptm/m/n/10 more ap-pro-pri-ate met-rics by us-ing these names. To make thes
e eas-ier to re-mem-ber,

Underfull \hbox (badness 1755) in paragraph at lines 4684--4686
[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East 
Asian lan-guages -- see
[799] [800]
Underfull \hbox (badness 1057) in paragraph at lines 4795--4800
[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \
T1/zi4/m/n/10 "rgb"\T1/ptm/m/n/10 ) (which is RGB+gray) and
[801]
Underfull \hbox (badness 7344) in paragraph at lines 4855--4857
[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
[802] [803]
Underfull \hbox (badness 2035) in paragraph at lines 4979--4988
[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

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\T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/
n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1
0 ,

Underfull \hbox (badness 10000) in paragraph at lines 4979--4988
\T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino"
 \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG
othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 ,
[804]
Underfull \hbox (badness 10000) in paragraph at lines 5048--5055
[]\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4
/m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu /

Underfull \hbox (badness 2189) in paragraph at lines 5048--5055
\T1/zi4/m/n/10 chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Lunde's CJK
V re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly .
[805] [806] [807]
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[]\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo
nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T
1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/
n/10 ,
[808]
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[]\T1/ptm/m/n/10 title for the Quartz win-dow (ap-plies to on-screen out-put on
ly), de-fault
[809] [810] [811] [812] [813] [814] [815]
Underfull \hbox (badness 10000) in paragraph at lines 5686--5689
[]\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red
/green/blue) into HSV space
[816]
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[818] [819] [820] [821]
Underfull \hbox (badness 1189) in paragraph at lines 6083--6085
[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
[822] [823]
Underfull \hbox (badness 10000) in paragraph at lines 6181--6183
[]\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK 
lan-guages and
[824] [825] [826] [827]
Underfull \hbox (badness 3780) in paragraph at lines 6472--6478
[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1
0 "AvantGarde"\T1/ptm/m/n/10 ,
[828] [829] [830]
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[]\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n
umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of
[831] [832] [833]) (./graphics-pkg.tex [834]
Chapter 5.
[835] [836] [837] [838] [839] [840] [841] [842] [843] [844] [845]
Underfull \hbox (badness 10000) in paragraph at lines 683--690
[]\T1/zi4/m/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/p
tm/m/n/10 in-ter-face to the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/pt
m/m/n/10 in
[846] [847] [848] [849]
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[][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works 
nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n
/10 ,
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[867] [868] [869] [870] [871]
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\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
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[]\T1/ptm/m/n/10 vector of back-ground (fill) col-ors for the open plot sym-bol
s given by
[899] [900] [901] [902] [903] [904] [905]
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[]\T1/ptm/m/n/10 a func-tion which in-di-cates what should hap-pen when the dat
a con-tain
[906]
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[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used: see
[907] [908] [909] [910] [911]
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[]\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n
/10 (width, height) \T1/ptm/m/n/10 in user co-or-di-nate units.

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\T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin"
) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that
[912]
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[913]
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[916]
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[]\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2
:6\T1/ptm/m/n/10 ) cor-re-spond to
[917] [918] [919] [920] [921]
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[][] 
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[942]
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\T1/ptm/m/n/10 avoided (see the Warn-ings sec-tion be-low). Split-screen mode i
s ex-ited by the com-mand
[953]
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[]\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d
rawn be-tween the point \T1/zi4/m/n/10 (x0[i], y0[i]) \T1/ptm/m/n/10 and the po
int
[954] [955] [956] [957] [958] [959] [960] [961] [962] [963] [964] [965]
[966] [967] [968] [969] [970] [971] [972] [973] [974]
Underfull \hbox (badness 6691) in paragraph at lines 8625--8628
[]\T1/ptm/m/n/10 The main ti-tle (on top) us-ing font and size (char-ac-ter ex-
pan-sion)

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[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font and size \T1/zi4/m/n/10 par
("font.sub") \T1/ptm/m/n/10 and color
[975] [976]pdfTeX warning (ext4): destination with the same identifier (name{Rf
n.units}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8710 \HeaderA{units}{Graphical Units}{units}
                                               [977] [978] [979] [980])
(./grid-pkg.tex
Chapter 6.

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[982] [983] [984] [985] [986]
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[]\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1
/zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio
n of
[987] [988] [989] [990] [991] [992] [993] [994] [995] [996]
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[][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m
/n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10
 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 unit[][][]\T1/ptm/m/n/10 ,
[997] [998] [999] [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007]
[1008] [1009] [1010] [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018]
[1019] [1020] [1021] [1022] [1023] [1024] [1025] [1026] [1027] [1028] [1029]
[1030] [1031] [1032] [1033] [1034] [1035] [1036] [1037] [1038] [1039]
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[1052] [1053]
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
[1054] [1055] [1056] [1057]
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[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
[1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] [1066] [1067] [1068]
[1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] [1078]
Underfull \hbox (badness 10000) in paragraph at lines 5854--5860
\T1/ptm/m/n/10 and to spec-ify the min-i-mum or max-i-mum of a list of unit ob-
jects (e.g.,
[1079] [1080] [1081] [1082] [1083] [1084] [1085] [1086]
Underfull \hbox (badness 7649) in paragraph at lines 6324--6327
[]\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by
 do-ing some-thing like
[1087] [1088] [1089] [1090]) (./methods-pkg.tex
Chapter 7.
[1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100] [1101]
[1102] [1103] [1104] [1105] [1106] [1107] [1108] [1109] [1110]
Underfull \hbox (badness 2237) in paragraph at lines 1454--1456
[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \
T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package
"\T1/ptm/m/n/10 , also of class
[1111] [1112] [1113] [1114] [1115] [1116] [1117] [1118] [1119]
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[]\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c
an be an ob-ject of class

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\T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1
0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the
[1120] [1121] [1122] [1123] [1124] [1125] [1126] [1127]
Underfull \hbox (badness 10000) in paragraph at lines 2655--2658
[]\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p
tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o
b-jects of class
[1128] [1129]
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[]\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1
0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re
-turned re-sult is in
[1130]
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\T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo
ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store
s the
[1131] [1132] [1133] [1134] [1135] [1136] [1137]
Underfull \hbox (badness 1102) in paragraph at lines 3339--3341
[]\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na
me of the pack-age (with-out the ex-tra-ne-ous
[1138] [1139] [1140] [1141] [1142]
Underfull \hbox (badness 10000) in paragraph at lines 3667--3672
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these 
classes takes spe-cial ar-gu-ments

Underfull \hbox (badness 10000) in paragraph at lines 3675--3684
[]\T1/ptm/m/n/10 The
[1143] [1144] [1145] [1146] [1147] [1148]
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[1150] [1151] [1152] [1153] [1154] [1155] [1156]
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[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "SealedMethodDefinition" \T1/ptm/m/n/
10 is cre-ated by a call to [][]\T1/zi4/m/n/10 setMethod[][][] \T1/ptm/m/n/10 w
ith ar-gu-ment

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[]\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for 
the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar

Underfull \hbox (badness 1939) in paragraph at lines 4609--4615
\T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T
1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by
[1157] [1158] [1159] [1160] [1161] [1162]
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[1164]
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[1166]
Underfull \hbox (badness 1092) in paragraph at lines 5281--5288
\T1/ptm/m/n/10 names cor-re-spond-ing to some or all of the for-mal ar-gu-ments
. In the pre-vi-ous ex-am-ple,

Underfull \hbox (badness 1117) in paragraph at lines 5281--5288
\T1/ptm/m/n/10 if se-lect-ing class \T1/zi4/m/n/10 "track" \T1/ptm/m/n/10 for \
T1/zi4/m/n/10 x\T1/ptm/m/n/10 , find-ing that the se-lec-tion was an-other meth
-ods list and

Underfull \hbox (badness 4036) in paragraph at lines 5329--5332
[]\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10
 the method to use in re-sponse to a
[1167] [1168] [1169] [1170] [1171]
Underfull \hbox (badness 1087) in paragraph at lines 5649--5654
[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
[1172] [1173] [1174] [1175]
Underfull \hbox (badness 2221) in paragraph at lines 5878--5883
[]\T1/ptm/m/n/10 Two op-tional method names are in-ter-preted spe-cially, \T1/z
i4/m/n/10 initialize \T1/ptm/m/n/10 and
[1176] [1177] [1178] [1179] [1180]
Underfull \hbox (badness 1675) in paragraph at lines 6343--6349
\T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth
od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class
[1181] [1182] [1183] [1184]
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<to be read again> 
                   \relax 
l.6820 \aliasA{S4}{S3Part}{S4}
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: destination with the same identifier (name{Rfn.Complex}) has been already use
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<to be read again> 
                   \relax 
l.7096 \aliasA{Complex}{S4groupGeneric}{Complex}
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 ignored
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                   \relax 
l.7098 \aliasA{Logic}{S4groupGeneric}{Logic}
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with the same identifier (name{Rfn.Math}) has been already used, duplicate igno
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                   \relax 
l.7099 \aliasA{Math}{S4groupGeneric}{Math}
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                   \relax 
l.7101 \aliasA{Ops}{S4groupGeneric}{Ops}
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 the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor
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                   \relax 
l.7102 \aliasA{Summary}{S4groupGeneric}{Summary}
                                                 [1191]
Underfull \hbox (badness 2050) in paragraph at lines 7163--7167
[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
[1192] [1193] [1194]
Underfull \hbox (badness 1286) in paragraph at lines 7348--7350
[]\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, 
a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal
ly
[1195] [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203] [1204] [1205]
[1206] [1207] [1208] [1209] [1210] [1211] [1212] [1213] [1214] [1215] [1216]
[1217] [1218] [1219] [1220] [1221] [1222] [1223] [1224] [1225] [1226] [1227]
[1228]
Underfull \hbox (badness 1852) in paragraph at lines 9759--9763
[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1229] [1230] [1231] [1232]) (./parallel-pkg.tex
Chapter 8.

Underfull \hbox (badness 5490) in paragraph at lines 15--17
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4
/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[
][][]: see
[1233] [1234] [1235] [1236] [1237] [1238] [1239] [1240] [1241] [1242] [1243]
[1244] [1245] [1246] [1247] [1248] [1249] [1250] [1251] [1252]
Underfull \hbox (badness 3386) in paragraph at lines 1246--1249
[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R
andom.seed \T1/ptm/m/n/10 when the
[1253] [1254]) (./splines-pkg.tex
Chapter 9.

Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
[1255] [1256] [1257] [1258] [1259] [1260] [1261] [1262] [1263] [1264] [1265]
[1266] [1267] [1268] [1269]) (./stats-pkg.tex [1270]
Chapter 10.
[1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] [1281]
[1282] [1283]
Underfull \hbox (badness 1412) in paragraph at lines 844--846
[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm 
\T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for
[1284] [1285] [1286] [1287] [1288] [1289] [1290] [1291]
Underfull \hbox (badness 2503) in paragraph at lines 1325--1328
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1292] [1293] [1294]
Underfull \hbox (badness 10000) in paragraph at lines 1504--1508
[]\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov", "lm") \T1/ptm/m/n/
10 or for mul-ti-ple re-sponses of class
[1295] [1296] [1297] [1298] [1299] [1300] [1301] [1302] [1303] [1304] [1305]
Underfull \hbox (badness 3965) in paragraph at lines 2164--2166
[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
[1306] [1307] [1308] [1309] [1310]
Underfull \hbox (badness 3965) in paragraph at lines 2506--2508
[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
[1311] [1312] [1313] [1314] [1315] [1316] [1317] [1318] [1319] [1320] [1321]
[1322] [1323]
Underfull \hbox (badness 2503) in paragraph at lines 3323--3326
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1324] [1325] [1326] [1327] [1328] [1329] [1330] [1331] [1332] [1333] [1334]
[1335] [1336] [1337] [1338] [1339] [1340] [1341] [1342] [1343]
Underfull \hbox (badness 3989) in paragraph at lines 4548--4555
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
[1344] [1345] [1346] [1347] [1348] [1349] [1350] [1351] [1352] [1353]
Underfull \hbox (badness 2556) in paragraph at lines 5149--5152
[]\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/
ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p
tm/m/n/10 . For

Underfull \hbox (badness 2932) in paragraph at lines 5166--5168
[]\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se-
quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is 
given by
[1354] [1355] [1356] [1357]
Underfull \hbox (badness 1142) in paragraph at lines 5407--5419
\T1/ptm/m/n/10 For \T1/zi4/m/n/10 cov()\T1/ptm/m/n/10 , a non-Pearson method is
 un-usual but avail-able for the sake of com-plete-ness.
[1358] [1359]
Underfull \hbox (badness 2503) in paragraph at lines 5546--5550
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1360]
Underfull \hbox (badness 1168) in paragraph at lines 5607--5612
[]\T1/ptm/m/n/10 For Spear-man's test, p-values are com-puted us-ing al-go-rith
m AS 89 for $\OML/cmm/m/it/10 n < \OT1/cmr/m/n/10 1290$ \T1/ptm/m/n/10 and
[1361] [1362] [1363] [1364] [1365] [1366] [1367]
Underfull \hbox (badness 8132) in paragraph at lines 6049--6054
\T1/ptm/m/n/10 then \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is a den-dro-gram of the sa
me graph struc-ture as \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and for each node,
[1368] [1369] [1370] [1371] [1372]
Underfull \hbox (badness 7081) in paragraph at lines 6324--6327
[]\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be
 con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method

Underfull \hbox (badness 10000) in paragraph at lines 6328--6330
[]\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra
m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also
[1373] [1374] [1375] [1376] [1377]
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[1379] [1380] [1381] [1382] [1383] [1384] [1385]
Underfull \hbox (badness 10000) in paragraph at lines 7136--7139
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T
1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the
[1386] [1387]
Underfull \hbox (badness 10000) in paragraph at lines 7273--7276
[]\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/zi4/m/n/10 ht
tps : / / cran . r-[]project . org / web / views /
[1388] [1389] [1390] [1391]
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[1404] [1405] [1406] [1407] [1408] [1409] [1410] [1411] [1412]
Underfull \hbox (badness 2626) in paragraph at lines 8771--8774
[]\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/
m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1413]
Underfull \hbox (badness 2503) in paragraph at lines 8871--8875
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1414] [1415] [1416] [1417] [1418]
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[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Fligner-Killeen test of
 homogeneity of variances"\T1/ptm/m/n/10 . 
[1419] [1420] [1421] [1422] [1423] [1424] [1425] [1426] [1427] [1428] [1429]
[1430] [1431] [1432] [1433]
Underfull \hbox (badness 4518) in paragraph at lines 10132--10137
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1434] [1435] [1436] [1437]
Underfull \hbox (badness 2142) in paragraph at lines 10474--10477
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@
[1438]
Underfull \hbox (badness 1253) in paragraph at lines 10493--10496
[]\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][
]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it-
er-a-tion. Hence,
[1439]
Underfull \hbox (badness 1708) in paragraph at lines 10555--10559
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1440] [1441] [1442] [1443] [1444] [1445]
Underfull \hbox (badness 1694) in paragraph at lines 10951--10954
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to

Underfull \hbox (badness 1867) in paragraph at lines 10970--10979
\T1/ptm/m/n/10 in the row case. If ei-ther is miss-ing, as by de-fault, then th
e or-der-ing of the cor-re-
[1446] [1447] [1448] [1449] [1450] [1451] [1452] [1453]pdfTeX warning (ext4): d
estination with the same identifier (name{Rfn.hat}) has been already used, dupl
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l.11417 \aliasA{hat}{influence.measures}{hat}
                                              [1454] [1455]
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[]\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main
ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
[1456] [1457] [1458] [1459] [1460] [1461] [1462] [1463] [1464]
Underfull \hbox (badness 4441) in paragraph at lines 12098--12100
[]\T1/ptm/m/n/10 vector of dif-fer-enc-ing co-ef-fi-cients, so an ARMA model is
 fit-ted to

Underfull \hbox (badness 10000) in paragraph at lines 12105--12107
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa
ult[][][] \T1/ptm/m/n/10 when
[1465] [1466] [1467] [1468] [1469] [1470]
Underfull \hbox (badness 2894) in paragraph at lines 12439--12443
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
[1471] [1472] [1473] [1474] [1475] [1476] [1477] [1478] [1479] [1480] [1481]
Underfull \hbox (badness 4518) in paragraph at lines 13134--13139
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1482] [1483] [1484] [1485] [1486] [1487] [1488] [1489] [1490] [1491]
Underfull \hbox (badness 4518) in paragraph at lines 13781--13786
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1492] [1493]
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[]\T1/ptm/m/n/10 Only for the (de-fault) case \T1/zi4/m/n/10 (surface =

Underfull \hbox (badness 1199) in paragraph at lines 13926--13928
[]\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on
ly if \T1/zi4/m/n/10 family \T1/ptm/m/n/10 is
[1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504]
[1505] [1506] [1507] [1508] [1509] [1510] [1511]
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
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[]\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response 
\T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(, "offset") \T1
/ptm/m/n/10 and
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[]\T1/ptm/m/n/10 Douglas M. Bates and Saikat De-bRoy: David M. Gay for the For-
tran code used by
[1546] [1547]
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Underfull \hbox (badness 1377) in paragraph at lines 18034--18039
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

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[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

Underfull \hbox (badness 1184) in paragraph at lines 18052--18056
\T1/ptm/m/n/10 value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + reltol
) \T1/ptm/m/n/10 at a step. De-faults to

Underfull \hbox (badness 2662) in paragraph at lines 18060--18064
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt
m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \
T1/ptm/m/n/10 meth-ods if
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
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[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , add to al-read
y ex-ist-ing plot. Only valid for

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[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
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[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1591]
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[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1
/ptm/m/n/10 or
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[1603] [1604] [1605] [1606] [1607]
Underfull \hbox (badness 10000) in paragraph at lines 20803--20809
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][
][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 ,
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[1619] [1620] [1621] [1622] [1623] [1624] [1625] [1626] [1627] [1628] [1629]
[1630]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
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[1642]
Underfull \hbox (badness 10000) in paragraph at lines 22931--22934
[]\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by
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Underfull \hbox (badness 10000) in paragraph at lines 23508--23511
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run
med(x, k) \T1/ptm/m/n/10 sim-ply has
[1652]
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[][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's
 end point rule and is called by de-fault from
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Underfull \hbox (badness 3439) in paragraph at lines 24029--24035
[][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSasympO
rig[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSbiexp[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 SSfol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSfpl[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 SSgompertz[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 SSlogis[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSmicmen[][][]\T1/ptm/m/n/1
0 ,
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Underfull \hbox (badness 10000) in paragraph at lines 24577--24582
[]\T1/ptm/m/n/10 integer or [][]\T1/zi4/m/n/10 function[][][] \T1/ptm/m/n/10 gi
v-ing the num-ber of knots to use when
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[1686]
Underfull \hbox (badness 3514) in paragraph at lines 25593--25598
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1687]
Underfull \hbox (badness 3514) in paragraph at lines 25655--25660
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1688]
Underfull \hbox (badness 3514) in paragraph at lines 25712--25717
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1689]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1690] [1691] [1692] [1693]
Underfull \hbox (badness 3514) in paragraph at lines 25986--25991
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion

Underfull \hbox (badness 3514) in paragraph at lines 26042--26047
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1694]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1695]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1696] [1697]
Underfull \hbox (badness 6691) in paragraph at lines 26223--26228
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p
tm/m/n/10 . It is the value of the ex-pres-sion
[1698] [1699] [1700] [1701] [1702] [1703] [1704] [1705]
Underfull \hbox (badness 10000) in paragraph at lines 26747--26750
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-

Underfull \hbox (badness 10000) in paragraph at lines 26747--26750
\T1/ptm/m/n/10 trac-tion, which should be odd. If \T1/zi4/m/n/10 NULL\T1/ptm/m/
n/10 , the de-fault,
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Underfull \hbox (badness 5431) in paragraph at lines 27353--27355
[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
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[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1720] [1721] [1722] [1723] [1724]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1725] [1726]
Underfull \hbox (badness 10000) in paragraph at lines 27992--27995
[]\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/
10 ; cur-rently ex-cept for \T1/zi4/m/n/10 rt()\T1/ptm/m/n/10 , only for
[1727] [1728] [1729]
Underfull \hbox (badness 1616) in paragraph at lines 28175--28178
[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
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Underfull \hbox (badness 10000) in paragraph at lines 29302--29306
[]\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z
i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect
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[1753] [1754]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1763]
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[]\T1/ptm/m/n/10 an es-ti-mate of the lo-ca-tion pa-ram-e-ter. (Only present if
 ar-gu-ment
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[]\T1/ptm/m/n/10 There is a \T1/zi4/m/n/10 summary \T1/ptm/m/n/10 method for co
n-tin-gency ta-ble ob-jects cre-ated by \T1/zi4/m/n/10 table \T1/ptm/m/n/10 or
[1770] [1771] [1772]) (./stats4-pkg.tex
Chapter 11.
[1773] [1774] [1775] [1776] [1777] [1778]pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup
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l.407 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                   [1779] [1780] [1781]
[1782]) (./tcltk-pkg.tex
Chapter 12.
[1783] [1784] [1785] [1786] [1787] [1788] [1789]
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Underfull \hbox (badness 1546) in paragraph at lines 664--671
[]\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing
 any Tk or Tcl com-mand by sim-ply run-ning
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[][][]\T1/zi4/m/n/10 select.list[][][] \T1/ptm/m/n/10 (a text ver-sion ex-cept 
on Win-dows and the OS X GUI), [][]\T1/zi4/m/n/10 menu[][][] \T1/ptm/m/n/10 (wh
ose
[1803]) (./tools-pkg.tex [1804]
Chapter 13.
[1805]

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[1806]
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[]\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b
e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
[1807] [1808]
Underfull \hbox (badness 1308) in paragraph at lines 285--298
[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types

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\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe
ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

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\T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee
dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 formatMastersthesis\T1/ptm/m/n/10 ,

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\T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm
/m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma
tTechreport \T1/ptm/m/n/10 and
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[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine 
to use. Over-rides any
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[]\T1/ptm/m/n/10 Delete files in the tem-po-rary di-rec-tory? This op-tion is i
g-nored when
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\T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe
n-den-cies (de-
[1823]
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[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

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[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a 
pre-vi-ous

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[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing


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\T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z
i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 ,
[1824] [1825] [1826]
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[]\T1/ptm/m/n/10 Re-save PDF files (es-pe-cially vi-gnettes) more com-pactly. S
up-port func-tion for
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of

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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see
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l.1721 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
                                                   [1834] [1835]
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[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/n/10 TRUE
\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/n/10 De
pendsList \T1/ptm/m/n/10 ob-ject

Underfull \hbox (badness 7221) in paragraph at lines 1847--1852
\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of
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[]\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t
or of links, as re-turned by
[1852] [1853] [1854] [1855] [1856] [1857] [1858] [1859] [1860] [1861] [1862]
Underfull \hbox (badness 10000) in paragraph at lines 3539--3541
[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
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Underfull \hbox (badness 1838) in paragraph at lines 3919--3925
[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The

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\T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file
[1869] [1870]
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[]\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/sl/10 TR
UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/sl/10
 DependsList \T1/ptm/m/n/10 ob-ject

Underfull \hbox (badness 7221) in paragraph at lines 3999--4004
\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
[1871] [1872]
Underfull \hbox (badness 1688) in paragraph at lines 4142--4154
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to be used in the `\T
1/zi4/m/sl/10 PACKAGES\T1/ptm/m/n/10 ' and
[1873] [1874] [1875] [1876]) (./utils-pkg.tex
Chapter 14.
[1877]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ',
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if the search should be case-insensitive
, \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 by de-

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[]\T1/zi4/m/sl/10 find \T1/ptm/m/n/10 is a dif-fer-ent user in-ter-face for the
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[]\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1
0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 ,

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\T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel
l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the
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[]\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to
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\T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi
4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as
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[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O
S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/
10 "License_is_FOSS"\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
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[]\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th
is func-tion is in-voked for its side ef-fect of up-dat-ing
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[]\T1/ptm/m/n/10 One can in-clude an auto-generated pack-age ci-ta-tion in the 
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[]\T1/ptm/m/n/10 A list of keys that have been pre-vi-ously cited, to be used w
hen
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sim-pli-fied to
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[]\T1/ptm/m/n/10 a [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4
/m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m
/n/10 ar-gu-ment above. In the lat-ter case, the iden-tity
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[]\T1/ptm/m/n/10 The \T1/zi4/m/sl/10 "libcurl" \T1/ptm/m/n/10 and \T1/zi4/m/sl/
10 "wget" \T1/ptm/m/n/10 meth-ods fol-low `\T1/zi4/m/sl/10 http://\T1/ptm/m/n/1
0 ' and `\T1/zi4/m/sl/10 https://\T1/ptm/m/n/10 ' redi-rec-tions: the
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[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
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[]\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers 
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
[1957]
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[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

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\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file
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[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,
[1961]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See
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[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
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[]\T1/ptm/m/n/10 To in-stall a source pack-age with com-piled code only for the
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[1965]
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[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/sl/10 available.packag
es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able
[1966]
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[]\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to
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\T1/ptm/m/n/10 to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a source pac
k-age in-stall. E.g.,
[1967]
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[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/sl/
10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail-

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\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
 are source pack-ages

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\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by
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[][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10
 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/
10 ,
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[]\T1/zi4/m/sl/10 packageVersion() \T1/ptm/m/n/10 is a con-ve-nience short-cut,
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[]\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the
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[]\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for
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[]\T1/ptm/m/n/10 The name \T1/zi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b
e used on Win-dows, in which case
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[][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 read.t
able[][][]\T1/ptm/m/n/10 ;
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[][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve
rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for 
read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i
dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 write.
table[][][]\T1/ptm/m/n/10 ;
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[]\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia
, The Free En-cy-clo-pe-dia.

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[][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / w / index . php ? title
 = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac-
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[]\T1/ptm/m/n/10 For \T1/zi4/m/sl/10 type = "txt"\T1/ptm/m/n/10 , [][]\T1/zi4/m
/sl/10 file.show[][][] \T1/ptm/m/n/10 is used. [][]\T1/zi4/m/sl/10 vignette[][]
[]\T1/ptm/m/n/10 s are nicely viewed via
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[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/
ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emac
s / manual /
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[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n
ow taken from the en-vi-ron-ment vari-able
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[]\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y
ou can add a
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[]\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing 
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[]\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func-
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[]\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1
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[]\T1/ptm/m/n/10 Repository `\T1/zi4/m/sl/10 CRAN\T1/ptm/m/n/10 ' is treated sp
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[]\T1/ptm/m/n/10 Options other than \T1/zi4/m/sl/10 memory = "none" \T1/ptm/m/n
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[][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ 
format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / pubs . opengroup .
 org /

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\T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9
2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX
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[]\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/sl/10 destdir \T1/ptm/m/n/10 and \
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[]\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and
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[]\T1/ptm/m/n/10 For how the list of suit-able avail-able pack-ages is de-ter-m
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[][][]\T1/zi4/m/sl/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1
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s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n
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[][][]\T1/zi4/m/sl/10 browseVignettes[][][] \T1/ptm/m/n/10 for an HTML-based vi
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[]\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec-
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Chapter 1.

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[]\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h
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[]\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1
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g \T1/ptm/m/n/10 is 0; oth-er-wise, it is

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[]\T1/ptm/m/n/10 the largest nor-mal-ized floating-point num-ber. Typ-i-cally, 
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[]\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/
10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues
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[]\T1/ptm/m/n/10 logical: should \T1/zi4/m/n/10 minlength \T1/ptm/m/n/10 be ob-
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[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
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[]\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec-
tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis
t of length
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[]\T1/zi4/m/n/10 %% \T1/ptm/m/n/10 in-di-cates \T1/zi4/m/n/10 x mod y \T1/ptm/m
/n/10 and \T1/zi4/m/n/10 %/% \T1/ptm/m/n/10 in-di-cates in-te-ger di-vi-sion. I
t is guar-an-teed that
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 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen
t-date-and-times-in-MATLAB.html)[] 
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[]\T1/ptm/m/n/10 a date-time ob-ject, or some-thing which can be co-erced by
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[]\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim
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[71] [72] [73] [74]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c
har-ac-ter by
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[]\T1/ptm/m/n/10 New restarts for \T1/zi4/m/n/10 withRestarts \T1/ptm/m/n/10 ca
n be spec-i-fied in sev-eral ways. The sim-plest is in
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[]\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa
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[]\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo
st gen-eral form (from RFC1738) is
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[]\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \
T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re-
move a

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\T1/ptm/m/n/10 Byte Or-der Mark if present (which it of-ten is for files and we
b-pages gen-er-ated by Mi-

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m-mended) when writ-ing it
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\T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z
i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as
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\T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https
 : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$
[][]\T1/ptm/m/n/10 .
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[]\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0, \T1/zi4/m/n/10 
getOption("OutDec") \T1/ptm/m/n/10 is con-sulted when la-bels are con-structed 
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[][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c
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]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T
1/ptm/m/n/10 ,
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[]\T1/zi4/m/n/10 data.frame \T1/ptm/m/n/10 con-verts each of its ar-gu-ments to
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[][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 
, [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[]
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[][]\T1/zi4/m/n/10 [.data.frame[][][] \T1/ptm/m/n/10 for sub-set-ting meth-ods,
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[]\T1/ptm/m/n/10 Subtraction of date-time ob-jects gives an ob-ject of this cla
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\T1/ptm/m/n/10 code anal-y-sis as a di-rec-tive to sup-press check-ing of \T1/z
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\T1/zi4/m/n/10 754-[]2008$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 https : / / 
en . wikipedia . org / wiki / Double _ precision$[][]\T1/ptm/m/n/10 , [][]$\T1/
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[]\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len
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[]\T1/ptm/m/n/10 Both \T1/zi4/m/n/10 $ \T1/ptm/m/n/10 and \T1/zi4/m/n/10 [[ \T1
/ptm/m/n/10 can be ap-plied to en-vi-ron-ments. Only char-ac-ter in-dices are a
l-lowed

Underfull \hbox (badness 4341) in paragraph at lines 11754--11763
\T1/ptm/m/n/10 and no par-tial match-ing is done. The se-man-tics of these op-e
r-a-tions are those of
[182] [183] [184] [185] [186] [187] [188] [189] [190] [191]
Underfull \hbox (badness 6236) in paragraph at lines 12398--12401
[]\T1/ptm/m/n/10 For \T1/zi4/m/n/10 iconv \T1/ptm/m/n/10 this will give the im-
ple-men-ta-tion as well as the ver-sion, for ex-am-ple
[192] [193] [194] [195] [196] [197]
Underfull \hbox (badness 2253) in paragraph at lines 12776--12778
[]\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is
 done: see
[198]
Underfull \hbox (badness 1565) in paragraph at lines 12847--12851
[][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo
lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi
le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/
10 , and
[199]
Underfull \hbox (badness 10000) in paragraph at lines 12891--12893
[]\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m
/n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with
[200] [201]
Underfull \hbox (badness 1466) in paragraph at lines 13032--13035
[]\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/
zi4/m/n/10 file.copy \T1/ptm/m/n/10 and
[202] [203]
Underfull \hbox (badness 10000) in paragraph at lines 13140--13144
[][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac
cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [
][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/
zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 13151--13154
[][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][
] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik
i /
[204] [205] [206] [207]
Underfull \hbox (badness 3965) in paragraph at lines 13403--13407
[]\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr
i-bu-tion func-tion, and in-deed,
[208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218]
Underfull \hbox (badness 4429) in paragraph at lines 14133--14136
[]\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][]
\T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for
[219]
Underfull \hbox (badness 10000) in paragraph at lines 14225--14227
[]\T1/ptm/m/n/10 If you set \T1/zi4/m/n/10 format \T1/ptm/m/n/10 it over-rides 
the set-ting of \T1/zi4/m/n/10 mode\T1/ptm/m/n/10 , so

Underfull \hbox (badness 10000) in paragraph at lines 14231--14235
[]\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b
ers on the dec-i-mal point, so
[220]
Underfull \hbox (badness 10000) in paragraph at lines 14273--14277
[]\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in
 \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt
m/m/n/10 3.2.0: for use

Underfull \hbox (badness 4156) in paragraph at lines 14273--14277
\T1/ptm/m/n/10 within [][]\T1/zi4/m/n/10 print[][][] \T1/ptm/m/n/10 meth-ods in
 pack-ages which might be used with ear-lier ver-sions: use
[221]
Underfull \vbox (badness 3803) has occurred while \output is active [222]
[223] [224] [225] [226] [227] [228] [229]
Underfull \hbox (badness 2452) in paragraph at lines 14853--14857
[]\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m
ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses-

Underfull \hbox (badness 1147) in paragraph at lines 14853--14857
\T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to
 the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_
WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and
[230] [231] [232]
Underfull \hbox (badness 1092) in paragraph at lines 15026--15031
[][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t
he DLL has been loaded us-ing
[233] [234] [235] [236]
Underfull \hbox (badness 6741) in paragraph at lines 15274--15278
\T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \
T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10
 ,
[237] [238] [239] [240]
Underfull \hbox (badness 1867) in paragraph at lines 15580--15587
[]\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][]
[] (or char-ac-ter string for
[241] [242] [243] [244]
Underfull \vbox (badness 10000) has occurred while \output is active [245]
[246]
Underfull \hbox (badness 3679) in paragraph at lines 15960--15962
[]\T1/ptm/m/n/10 The TRE li-brary of Ville Lau-rikari ([][]$\T1/zi4/m/n/10 http
 : / / laurikari . net / tre/$[][]\T1/ptm/m/n/10 ) is used ex-cept for
[247] [248] [249] [250] [251] [252] [253]
Underfull \hbox (badness 1478) in paragraph at lines 16440--16443
[]\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha
r-ac-ter vec-tor
[254] [255] [256] [257]
Underfull \hbox (badness 10000) in paragraph at lines 16693--16695
[]\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 http : / / www
 . unicode . org / reports / tr35 /
[258] [259] [260] [261] [262] [263] [264] [265] [266]
Underfull \hbox (badness 1442) in paragraph at lines 17256--17258
[]\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed 
and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see
[267]
Underfull \hbox (badness 2452) in paragraph at lines 17348--17364
[][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c
omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 ,
 [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi
cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\
T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 ,
[268] [269] [270] [271] [272] [273] [274]
Underfull \hbox (badness 1248) in paragraph at lines 17756--17759
[]\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type
s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n
/10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/
m/n/10 ,
[275] [276] [277] [278]
Underfull \hbox (badness 4739) in paragraph at lines 18012--18014
[]\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere
d, see
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[291] [292] [293] [294]
Underfull \hbox (badness 1360) in paragraph at lines 18960--18965
\T1/zi4/m/n/10 "none"\T1/ptm/m/n/10 . It is in-tended for the ver-sion of OpenS
SL used, but not all

Underfull \hbox (badness 10000) in paragraph at lines 18983--18989
[][][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / sslcerts . html$[][]
 \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs /

Underfull \hbox (badness 1127) in paragraph at lines 18983--18989
\T1/zi4/m/n/10 ssl-[]compared . html$[][] \T1/ptm/m/n/10 for more de-tails on S
SL ver-sions. Nor-mally \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 used with \T1/phv
/m/n/10 R
[295]
Underfull \hbox (badness 10000) in paragraph at lines 19056--19060
[]\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an
d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory

Underfull \hbox (badness 2460) in paragraph at lines 19056--19060
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/
10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T
1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10
 '
[296] [297]
Underfull \hbox (badness 1509) in paragraph at lines 19191--19198
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 library \T1/ptm/m/n/10 is called with no \T1
/zi4/m/n/10 package \T1/ptm/m/n/10 or \T1/zi4/m/n/10 help \T1/ptm/m/n/10 ar-gu-
ment, it lists all avail-able pack-ages

Underfull \hbox (badness 1354) in paragraph at lines 19191--19198
\T1/ptm/m/n/10 Use \T1/zi4/m/n/10 .packages(all = TRUE) \T1/ptm/m/n/10 to ob-ta
in just the names of all avail-able pack-ages, and

Underfull \hbox (badness 1014) in paragraph at lines 19207--19212
[]\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi
s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1
0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if
[298] [299] [300] [301] [302] [303] [304] [305] [306] [307] [308] [309]
Underfull \hbox (badness 1264) in paragraph at lines 19938--19943
[]\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways 
be sup-ported:
[310] [311] [312] [313] [314] [315] [316] [317] [318] [319] [320]
Underfull \hbox (badness 10000) in paragraph at lines 20692--20694
[]\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n
/10 has the prop-erty that
[321] [322] [323] [324] [325] [326] [327] [328] [329] [330] [331] [332]
[333] [334] [335] [336]
Underfull \hbox (badness 1077) in paragraph at lines 21690--21696
\T1/zi4/m/n/10 / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm/m/n/10 , [][
]$\T1/zi4/m/n/10 http : / / tukaani . org / xz/$[][] \T1/ptm/m/n/10 and [][]$\T
1/zi4/m/n/10 https : / / en . wikipedia .
[337] [338] [339]
Underfull \hbox (badness 1484) in paragraph at lines 21851--21859
\T1/ptm/m/n/10 to al-low more (up to 3Gb). See [][]$\T1/zi4/m/n/10 https : / / 
www . microsoft . com / whdc / system / platform /
[340] [341] [342] [343]
Underfull \hbox (badness 2790) in paragraph at lines 22122--22125
[]\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s
ages can be sup-pressed sep-a-rately by

Underfull \hbox (badness 1571) in paragraph at lines 22122--22125
\T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m
es-sages, so can be sup-pressed by
[344] [345] [346] [347]
Underfull \hbox (badness 1194) in paragraph at lines 22403--22406
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha
n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 .
 It calls
[348] [349] [350] [351]
Underfull \hbox (badness 10000) in paragraph at lines 22609--22615
[]\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 
, \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond-
ing

Underfull \hbox (badness 5862) in paragraph at lines 22609--22615
\T1/ptm/m/n/10 list, i.e., \T1/zi4/m/n/10 names(as.list(env, all.names = TRUE))
 \T1/ptm/m/n/10 which are also given by

Underfull \hbox (badness 10000) in paragraph at lines 22619--22622
[]\T1/ptm/m/n/10 It is pos-si-ble to up-date just part of the names at-tribute 
via the gen-eral rules:

Underfull \hbox (badness 10000) in paragraph at lines 22619--22622
\T1/ptm/m/n/10 see the ex-am-ples. This works be-cause the ex-pres-sion there i
s eval-u-ated as
[352] [353] [354] [355] [356] [357] [358] [359] [360] [361] [362] [363]
[364] [365]
Underfull \hbox (badness 10000) in paragraph at lines 23544--23546
[]\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m
ore ef-fi-cient than
[366] [367] [368] [369]
Underfull \hbox (badness 1199) in paragraph at lines 23771--23777
[]\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 is.numeric \T1/ptm/m/n/
10 re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 if its ar-gu-ment is of [][]mode
[][][] \T1/zi4/m/n/10 "numeric"

Underfull \hbox (badness 2027) in paragraph at lines 23771--23777
\T1/ptm/m/n/10 ([][]type[][][] \T1/zi4/m/n/10 "double" \T1/ptm/m/n/10 or type \
T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 ) and not a fac-tor, and \T1/zi4/m/n/10 F
ALSE \T1/ptm/m/n/10 oth-er-wise. That is,
[370] [371] [372] [373] [374] [375] [376] [377]
Underfull \hbox (badness 1038) in paragraph at lines 24336--24344
[]\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/
10 R \T1/ptm/m/n/10 starts up. Ini-tially

Underfull \hbox (badness 1881) in paragraph at lines 24345--24348
[]\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str
ucts which are

Underfull \hbox (badness 6220) in paragraph at lines 24364--24366
[]\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see

[378]
Underfull \hbox (badness 10000) in paragraph at lines 24436--24446
[]\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/zi4/m
/n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to

Underfull \hbox (badness 2142) in paragraph at lines 24447--24453
[]\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr
ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 1968) in paragraph at lines 24460--24465
[]\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p
tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able

Underfull \hbox (badness 10000) in paragraph at lines 24470--24472
[]\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v
alue
[379] [380] [381]
Underfull \hbox (badness 10000) in paragraph at lines 24721--24727
[]\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/
n/10 setRepositories[][][]\T1/ptm/m/n/10 ,

Underfull \hbox (badness 10000) in paragraph at lines 24721--24727
\T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "http://bioconductor.org"\T1/p
tm/m/n/10 ' or the Eu-ro-pean mir-ror

Underfull \hbox (badness 10000) in paragraph at lines 24721--24727
\T1/ptm/m/n/10 `\T1/zi4/m/n/10 "http://bioconductor.statistik.tu-dortmund.de"\T
1/ptm/m/n/10 '. Can be set by

Underfull \hbox (badness 10000) in paragraph at lines 24734--24737
[]\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][
][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10
 and
[382]
Underfull \hbox (badness 2689) in paragraph at lines 24758--24760
[]\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na
l HTTP server, see

Underfull \hbox (badness 10000) in paragraph at lines 24790--24795
[]\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/
10 (and in-di-rectly

Underfull \hbox (badness 1629) in paragraph at lines 24796--24807
\T1/ptm/m/n/10 si-ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi
4/m/n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use an
d

Underfull \hbox (badness 7203) in paragraph at lines 24808--24811
[]\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos
t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/
n/10 and

Underfull \hbox (badness 4084) in paragraph at lines 24818--24830
\T1/ptm/m/n/10 Pos-si-ble val-ues are \T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (t
he de-fault ex-cept un-der a CRAN OS X build),

Underfull \hbox (badness 10000) in paragraph at lines 24818--24830
\T1/zi4/m/n/10 "mac.binary."\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "mac.binary.maveric
ks" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "both" \T1/ptm/m/n/10 (the de-fault for C
RAN

Underfull \hbox (badness 7397) in paragraph at lines 24818--24830
\T1/ptm/m/n/10 OS X builds). Win-dows uses \T1/zi4/m/n/10 "win.binary"\T1/ptm/m
/n/10 . (\T1/zi4/m/n/10 "mac.binary.leopard" \T1/ptm/m/n/10 and

Underfull \hbox (badness 10000) in paragraph at lines 24832--24839
[]\T1/ptm/m/n/10 URLs of the repos-i-to-ries for use by [][]\T1/zi4/m/n/10 upda
te.packages[][][]\T1/ptm/m/n/10 . De-faults to

Underfull \hbox (badness 10000) in paragraph at lines 24832--24839
\T1/zi4/m/n/10 c(CRAN="@CRAN@")\T1/ptm/m/n/10 , a value that causes some util-i
-ties to prompt for a

Underfull \hbox (badness 6380) in paragraph at lines 24832--24839
\T1/ptm/m/n/10 CRAN mir-ror. To avoid this do set the CRAN mir-ror, by some-thi
ng like

Underfull \hbox (badness 1082) in paragraph at lines 24832--24839
\T1/zi4/m/n/10 local({r <- getOption("repos"); r["CRAN"] <- "http://my.local.cr
an";
[383] [384] [385] [386] [387]
Underfull \hbox (badness 10000) in paragraph at lines 25153--25157
[]\T1/ptm/m/n/10 The outer prod-uct of the ar-rays \T1/zi4/m/n/10 X \T1/ptm/m/n
/10 and \T1/zi4/m/n/10 Y \T1/ptm/m/n/10 is the ar-ray \T1/zi4/m/n/10 A \T1/ptm/
m/n/10 with di-men-sion

Underfull \hbox (badness 10000) in paragraph at lines 25153--25157
\T1/zi4/m/n/10 c(dim(X), dim(Y)) \T1/ptm/m/n/10 where el-e-ment \T1/zi4/m/n/10 
A[c(arrayindex.x, arrayindex.y)]
[388] [389] [390] [391] [392]
Underfull \hbox (badness 1735) in paragraph at lines 25471--25475
[]\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 paste() \T1/ptm/m/n/10 co-erces [][]\
T1/zi4/m/n/10 NA_character_[][][]\T1/ptm/m/n/10 , the char-ac-ter miss-ing valu
e, to \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 which
[393] [394] [395] [396] [397] [398] [399] [400] [401] [402]
Underfull \hbox (badness 2726) in paragraph at lines 26030--26033
[]\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di
-cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put,
 see
[403] [404] [405] [406] [407] [408] [409] [410] [411] [412] [413] [414]
[415]
Underfull \hbox (badness 1052) in paragraph at lines 26849--26854
[]\T1/zi4/m/n/10 qr.X \T1/ptm/m/n/10 re-turns $\OML/cmm/b/it/10 X$\T1/ptm/m/n/1
0 , the orig-i-nal ma-trix from which the qr ob-ject was con-structed, pro-vide
d
[416] [417] [418] [419] [420] [421] [422] [423] [424] [425] [426]
Underfull \hbox (badness 1533) in paragraph at lines 27577--27580
[]\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca
n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the
[427] [428]
Underfull \hbox (badness 1163) in paragraph at lines 27739--27749
[]\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\
T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in
[429] [430] [431] [432] [433] [434] [435] [436] [437] [438] [439] [440]
[441] [442] [443] [444] [445] [446] [447] [448] [449] [450] [451] [452]
Underfull \hbox (badness 10000) in paragraph at lines 29241--29245
[]\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n
/10 sup-port `named cap-ture'. If groups are named, e.g.,

Underfull \hbox (badness 1221) in paragraph at lines 29241--29245
\T1/zi4/m/n/10 "(?<first>[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t
he matches are also re-turned by name.

Underfull \hbox (badness 6188) in paragraph at lines 29263--29265
[]\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p
ubs . opengroup . org / onlinepubs / 9699919799 /
[453] [454] [455] [456] [457] [458] [459] [460] [461]
Underfull \hbox (badness 1655) in paragraph at lines 29808--29810
[]\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm
/m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for
[462] [463] [464] [465] [466] [467] [468] [469] [470] [471] [472]
Underfull \hbox (badness 10000) in paragraph at lines 30476--30480
[]\T1/zi4/m/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my c
ur-rent workspace', i.e.,
[473] [474] [475]
Underfull \hbox (badness 2302) in paragraph at lines 30716--30723
[]\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d
e-fined as $[]$,

Underfull \hbox (badness 2837) in paragraph at lines 30716--30723
\T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no
n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non
-missing

Underfull \hbox (badness 2980) in paragraph at lines 30716--30723
\T1/ptm/m/n/10 val-ues. In the case \T1/zi4/m/n/10 center = TRUE\T1/ptm/m/n/10 
, this is the same as the stan-dard de-vi-a-tion,

Underfull \hbox (badness 2181) in paragraph at lines 30716--30723
\T1/ptm/m/n/10 but in gen-eral it is not. (To scale by the stan-dard de-vi-a-ti
ons with-out cen-ter-ing, use
[476] [477] [478]
Underfull \hbox (badness 2261) in paragraph at lines 30870--30875
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i
t ap-plies to all fields; oth-er-wise, if

Underfull \hbox (badness 10000) in paragraph at lines 30897--30903
[]\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac-
ters
[479]
Underfull \hbox (badness 10000) in paragraph at lines 30973--30978
[]\T1/ptm/m/n/10 Note that since \T1/zi4/m/n/10 sep \T1/ptm/m/n/10 is a sep-a-r
a-tor and not a ter-mi-na-tor, read-ing a file by
[480] [481] [482] [483] [484] [485] [486] [487] [488] [489] [490] [491]
[492] [493] [494] [495] [496] [497] [498] [499] [500] [501] [502] [503]
[504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514] [515]
[516] [517] [518] [519] [520] [521] [522]
Underfull \hbox (badness 1072) in paragraph at lines 33757--33761
[]\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea
d from the file spec-i-fied by

Underfull \hbox (badness 10000) in paragraph at lines 33762--33766
[]\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/
10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 -
-no-init-file\T1/ptm/m/n/10 ',
[523]
Underfull \hbox (badness 10000) in paragraph at lines 33790--33796
[]\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file
s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 '

Underfull \hbox (badness 10000) in paragraph at lines 33790--33796
\T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for
 first in architecture-specific di-rec-to-ries,

Underfull \hbox (badness 1320) in paragraph at lines 33790--33796
\T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R
environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/
n/10 ' will be used in

Underfull \hbox (badness 3343) in paragraph at lines 33803--33810
\T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment 
vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the

Underfull \hbox (badness 2573) in paragraph at lines 33803--33810
\T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i
n site or user en-vi-ron-ment

Underfull \hbox (badness 1917) in paragraph at lines 33803--33810
\T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/
n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from
[524] [525] [526] [527] [528]
Underfull \hbox (badness 10000) in paragraph at lines 34094--34100
[]\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form
at \T1/ptm/m/n/10 meth-ods is

Underfull \hbox (badness 1152) in paragraph at lines 34094--34100
\T1/zi4/m/n/10 "%Y-%m-%d %H:%M:%S" \T1/ptm/m/n/10 if any el-e-ment has a time c
om-po-nent which is
[529] [530] [531] [532] [533] [534] [535] [536] [537] [538] [539] [540]
[541] [542] [543] [544] [545] [546] [547] [548] [549] [550] [551] [552]
[553] [554] [555] [556]
Underfull \hbox (badness 3333) in paragraph at lines 35877--35882
[]\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi
s may need to be matched ex-plic-itly: for ex-am-ple
[557] [558] [559] [560] [561] [562] [563] [564] [565] [566]
Underfull \hbox (badness 1472) in paragraph at lines 36497--36500
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee
p their source in-clud-ing com-ments, see
[567] [568] [569] [570] [571] [572] [573] [574] [575] [576] [577]
Underfull \hbox (badness 2671) in paragraph at lines 37159--37162
[]\T1/ptm/m/n/10 levels to re-move for all fac-tors in \T1/zi4/m/n/10 ...\T1/pt
m/m/n/10 . If set to \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 , it im-plies
[578] [579] [580] [581] [582] [583]
Underfull \hbox (badness 10000) in paragraph at lines 37563--37566
[][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [
][]$http : / / developer . r-[]project . org /
[584] [585]
Underfull \hbox (badness 10000) in paragraph at lines 37684--37688
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 getTaskCallbackNames
[][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer .
[586]
Underfull \hbox (badness 10000) in paragraph at lines 37746--37750
[][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r
emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[
][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer .
[587] [588] [589] [590] [591] [592] [593] [594] [595] [596] [597] [598]
[599] [600] [601] [602] [603] [604] [605]
Underfull \hbox (badness 1990) in paragraph at lines 39041--39049
[]\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e
r-rors that oc-cur dur-ing the eval-u-a-tion. If

Underfull \hbox (badness 4846) in paragraph at lines 39041--39049
\T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][
]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less
[606] [607] [608] [609] [610]
Underfull \hbox (badness 1515) in paragraph at lines 39313--39318
[]\T1/ptm/m/n/10 On most plat-forms `file' in-cludes sym-bolic links, fi-fos an
d sock-ets. Prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 2.15.0
[611] [612] [613]
Underfull \hbox (badness 1917) in paragraph at lines 39543--39550
[]\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/
ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute
[614] [615] [616] [617] [618] [619] [620] [621] [622]
Underfull \hbox (badness 3668) in paragraph at lines 40128--40130
[]\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di-
ately, even if
[623] [624]
Underfull \hbox (badness 2401) in paragraph at lines 40233--40237
[]\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war
n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a
[625] [626] [627]
Underfull \hbox (badness 2111) in paragraph at lines 40402--40407
\T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n
ot empty, these are used as col-umn names.

Underfull \hbox (badness 6542) in paragraph at lines 40418--40423
[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m
/n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has
 a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is
[628] [629] [630] [631] [632] [633] [634]
Underfull \hbox (badness 10000) in paragraph at lines 40863--40868
[]\T1/ptm/m/n/10 This is a spe-cial case of rank-ing, but as a less gen-eral fu
nc-tion than [][]\T1/zi4/m/n/10 rank[][][]

Underfull \hbox (badness 10000) in paragraph at lines 40863--40868
\T1/ptm/m/n/10 is more suit-able to be made generic. The de-fault method is sim
-i-lar to
[635] [636]
Underfull \hbox (badness 5417) in paragraph at lines 40955--40959
[]\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl
y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas
[637]
Underfull \hbox (badness 10000) in paragraph at lines 41016--41020
[]\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard
' reg-exps, in-clud-ing el-e-ments named
[638]) (./compiler-pkg.tex
Chapter 2.
[639] [640] [641] [642]) (./datasets-pkg.tex
Chapter 3.

Underfull \hbox (badness 10000) in paragraph at lines 12--14
[]\T1/ptm/m/n/10 This pack-age con-tains a va-ri-ety of datasets. For a com-ple
te list, use
[643] [644] [645] [646] [647] [648] [649] [650] [651] [652] [653] [654]
[655] [656] [657] [658] [659] [660] [661] [662] [663] [664] [665] [666]
[667] [668] [669] [670] [671] [672] [673] [674] [675] [676] [677] [678]
[679] [680] [681] [682] [683] [684] [685] [686] [687] [688] [689]
Underfull \vbox (badness 1515) has occurred while \output is active [690]
[691] [692] [693] [694] [695] [696] [697] [698] [699] [700] [701] [702]
[703] [704] [705] [706] [707] [708] [709]
Underfull \hbox (badness 6658) in paragraph at lines 3940--3942
[]\T1/ptm/m/n/10 For some pho-tos of Methuse-lah Walk see [][]$\T1/zi4/m/n/10 h
ttp : / / www . ltrr . arizona . edu / ~hallman /
[710]
Underfull \vbox (badness 10000) has occurred while \output is active [711]
[712] [713] [714]
Underfull \vbox (badness 10000) has occurred while \output is active [715]
Underfull \vbox (badness 10000) has occurred while \output is active [716]
[717] [718] [719] [720] [721] [722] [723]) (./grDevices-pkg.tex [724]
Chapter 4.
[725] [726] [727] [728] [729] [730] [731] [732] [733] [734] [735] [736]
[737] [738] [739] [740] [741]
Underfull \hbox (badness 5175) in paragraph at lines 1066--1068
[]\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm
. The source code is in
[742] [743] [744] [745]
Underfull \hbox (badness 1852) in paragraph at lines 1263--1266
[]\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col-
ors that will be used in plot-ting, call-ing
[746] [747] [748]
Underfull \hbox (badness 1490) in paragraph at lines 1469--1474
\T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\
T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/
10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and
[749]
Underfull \hbox (badness 2698) in paragraph at lines 1523--1526
[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 if the de-vice does not sup-port cap-ture,
 oth-er-wise a ma-trix of color names (for
[750]
Underfull \hbox (badness 10000) in paragraph at lines 1592--1596
[]\T1/ptm/m/n/10 logical; if \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , the func-tion 
also re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 when
[751] [752] [753] [754]
Underfull \hbox (badness 1325) in paragraph at lines 1875--1885
\T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 ,
 \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/
10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1
/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 ,
[755] [756]
Underfull \hbox (badness 10000) in paragraph at lines 1980--1982
[]\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the 
set-ting of
[757] [758] [759]
Underfull \hbox (badness 6758) in paragraph at lines 2141--2144
[]\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript
 doc-u-men-ta-tion) are
[760] [761] [762] [763] [764] [765] [766] [767] [768]
Underfull \hbox (badness 10000) in paragraph at lines 2707--2708

[769] [770] [771] [772] [773] [774] [775]
Underfull \hbox (badness 1152) in paragraph at lines 3145--3147
[]\T1/ptm/m/n/10 A length two in-te-ger vec-tor \T1/zi4/m/n/10 nr, nc \T1/ptm/m
/n/10 giv-ing the num-ber of rows and columns, ful-fill-ing
[776] [777] [778] [779] [780]
Underfull \hbox (badness 2856) in paragraph at lines 3465--3468
[]\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv
e a C in-te-ger for-mat such as

Underfull \hbox (badness 2662) in paragraph at lines 3479--3481
[]\T1/ptm/m/n/10 title string to em-bed as the `\T1/zi4/m/n/10 /Title\T1/ptm/m/
n/10 ' field in the file. De-faults to
[781] [782]
Underfull \hbox (badness 1173) in paragraph at lines 3595--3605
[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 paper \T1/ptm/m/n/10 ar-gu-ment sets the `\
T1/zi4/m/n/10 /MediaBox\T1/ptm/m/n/10 ' en-try in the file, which de-faults to 
\T1/zi4/m/n/10 width \T1/ptm/m/n/10 by
[783] [784] [785] [786] [787] [788] [789] [790] [791] [792] [793]
Underfull \hbox (badness 1067) in paragraph at lines 4302--4309
\T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled
 with sup-
[794] [795]
Underfull \hbox (badness 3364) in paragraph at lines 4463--4465
[]\T1/ptm/m/n/10 The TIFF spec-i-fi-ca-tion, in-clud-ing ex-ten-sions, at [][]$
\T1/zi4/m/n/10 https : / / partners . adobe . com / public /
[796]
Underfull \hbox (badness 1789) in paragraph at lines 4540--4542
[]\T1/ptm/m/n/10 title string to em-bed as the \T1/zi4/m/n/10 Title \T1/ptm/m/n
/10 com-ment in the file. De-faults to
[797]
Underfull \hbox (badness 1377) in paragraph at lines 4590--4595
[]\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently 
al-lowed val-ues
[798]
Underfull \hbox (badness 2671) in paragraph at lines 4617--4625
\T1/ptm/m/n/10 For use in this way you will prob-a-bly want to use [][]\T1/zi4/
m/n/10 setEPS[][][]() \T1/ptm/m/n/10 to set the de-faults as

Underfull \hbox (badness 1418) in paragraph at lines 4666--4673
\T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4
/m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/
zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm
/m/n/10 ,

Underfull \hbox (badness 2443) in paragraph at lines 4674--4683
\T1/ptm/m/n/10 PostScript de-vice is us-ing URW fonts, you will ob-tain ac-cess
 to more char-ac-ters and

Underfull \hbox (badness 2653) in paragraph at lines 4674--4683
\T1/ptm/m/n/10 more ap-pro-pri-ate met-rics by us-ing these names. To make thes
e eas-ier to re-mem-ber,

Underfull \hbox (badness 1755) in paragraph at lines 4684--4686
[]\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East 
Asian lan-guages -- see
[799] [800]
Underfull \hbox (badness 1057) in paragraph at lines 4795--4800
[]\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \
T1/zi4/m/n/10 "rgb"\T1/ptm/m/n/10 ) (which is RGB+gray) and
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[]\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t
ion by Brian D'Urso
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[]\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv
-a-lents) are also pro-

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\T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/
n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1
0 ,

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\T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino"
 \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG
othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 ,
[804]
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[]\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4
/m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu /

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\T1/zi4/m/n/10 chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Lunde's CJK
V re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly .
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[]\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo
nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T
1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/
n/10 ,
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[]\T1/ptm/m/n/10 title for the Quartz win-dow (ap-plies to on-screen out-put on
ly), de-fault
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[]\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red
/green/blue) into HSV space
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[]\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used
. One of
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[]\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK 
lan-guages and
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[]\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1
0 "AvantGarde"\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n
umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of
[831] [832] [833]) (./graphics-pkg.tex [834]
Chapter 5.
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[]\T1/zi4/m/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/p
tm/m/n/10 in-ter-face to the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/pt
m/m/n/10 in
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[][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works 
nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n
/10 ,
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\T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n
ot ap-ply to
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[]\T1/ptm/m/n/10 vector of back-ground (fill) col-ors for the open plot sym-bol
s given by
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[]\T1/ptm/m/n/10 a func-tion which in-di-cates what should hap-pen when the dat
a con-tain
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[]\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are 
to be used: see
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[]\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n
/10 (width, height) \T1/ptm/m/n/10 in user co-or-di-nate units.

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\T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin"
) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that
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[913]
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[916]
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[]\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2
:6\T1/ptm/m/n/10 ) cor-re-spond to
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[][] 
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\T1/ptm/m/n/10 avoided (see the Warn-ings sec-tion be-low). Split-screen mode i
s ex-ited by the com-mand
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[]\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d
rawn be-tween the point \T1/zi4/m/n/10 (x0[i], y0[i]) \T1/ptm/m/n/10 and the po
int
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[]\T1/ptm/m/n/10 The main ti-tle (on top) us-ing font and size (char-ac-ter ex-
pan-sion)

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[]\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font and size \T1/zi4/m/n/10 par
("font.sub") \T1/ptm/m/n/10 and color
[975] [976]pdfTeX warning (ext4): destination with the same identifier (name{Rf
n.units}) has been already used, duplicate ignored
<to be read again> 
                   \relax 
l.8710 \HeaderA{units}{Graphical Units}{units}
                                               [977] [978] [979] [980])
(./grid-pkg.tex
Chapter 6.

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[]\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1
/zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio
n of
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[][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m
/n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10
 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 unit[][][]\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec
t de-scrib-ing seg-ments), but only
[1054] [1055] [1056] [1057]
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[]\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject
s are co-erced by
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\T1/ptm/m/n/10 and to spec-ify the min-i-mum or max-i-mum of a list of unit ob-
jects (e.g.,
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[]\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by
 do-ing some-thing like
[1087] [1088] [1089] [1090]) (./methods-pkg.tex
Chapter 7.
[1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100] [1101]
[1102] [1103] [1104] [1105] [1106] [1107] [1108] [1109] [1110]
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[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \
T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package
"\T1/ptm/m/n/10 , also of class
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[]\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c
an be an ob-ject of class

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\T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1
0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the
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[]\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p
tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o
b-jects of class
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[]\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1
0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re
-turned re-sult is in
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\T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo
ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store
s the
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[]\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na
me of the pack-age (with-out the ex-tra-ne-ous
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[]\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these 
classes takes spe-cial ar-gu-ments

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[]\T1/ptm/m/n/10 The
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[]\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "SealedMethodDefinition" \T1/ptm/m/n/
10 is cre-ated by a call to [][]\T1/zi4/m/n/10 setMethod[][][] \T1/ptm/m/n/10 w
ith ar-gu-ment

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[]\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for 
the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar

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\T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T
1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by
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\T1/ptm/m/n/10 names cor-re-spond-ing to some or all of the for-mal ar-gu-ments
. In the pre-vi-ous ex-am-ple,

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\T1/ptm/m/n/10 if se-lect-ing class \T1/zi4/m/n/10 "track" \T1/ptm/m/n/10 for \
T1/zi4/m/n/10 x\T1/ptm/m/n/10 , find-ing that the se-lec-tion was an-other meth
-ods list and

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[]\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10
 the method to use in re-sponse to a
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[]\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o
ds for this class are found (us-ing
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[]\T1/ptm/m/n/10 Two op-tional method names are in-ter-preted spe-cially, \T1/z
i4/m/n/10 initialize \T1/ptm/m/n/10 and
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\T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth
od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class
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                                                 [1191]
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[]\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic 
can be ob-tained by call-ing
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[]\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, 
a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal
ly
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[]\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl
ass, from the data part; e.g.,
[1229] [1230] [1231] [1232]) (./parallel-pkg.tex
Chapter 8.

Underfull \hbox (badness 5490) in paragraph at lines 15--17
[]\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4
/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[
][][]: see
[1233] [1234] [1235] [1236] [1237] [1238] [1239] [1240] [1241] [1242] [1243]
[1244] [1245] [1246] [1247] [1248] [1249] [1250] [1251] [1252]
Underfull \hbox (badness 3386) in paragraph at lines 1246--1249
[]\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R
andom.seed \T1/ptm/m/n/10 when the
[1253] [1254]) (./splines-pkg.tex
Chapter 9.

Underfull \hbox (badness 10000) in paragraph at lines 22--24
[]\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 <bates@stat.wisc.edu> \T1/ptm/
m/n/10 and William N. Ven-ables
[1255] [1256] [1257] [1258] [1259] [1260] [1261] [1262] [1263] [1264] [1265]
[1266] [1267] [1268] [1269]) (./stats-pkg.tex [1270]
Chapter 10.
[1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] [1281]
[1282] [1283]
Underfull \hbox (badness 1412) in paragraph at lines 844--846
[]\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm 
\T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for
[1284] [1285] [1286] [1287] [1288] [1289] [1290] [1291]
Underfull \hbox (badness 2503) in paragraph at lines 1325--1328
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1292] [1293] [1294]
Underfull \hbox (badness 10000) in paragraph at lines 1504--1508
[]\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov", "lm") \T1/ptm/m/n/
10 or for mul-ti-ple re-sponses of class
[1295] [1296] [1297] [1298] [1299] [1300] [1301] [1302] [1303] [1304] [1305]
Underfull \hbox (badness 3965) in paragraph at lines 2164--2166
[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
[1306] [1307] [1308] [1309] [1310]
Underfull \hbox (badness 3965) in paragraph at lines 2506--2508
[]\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val
id for
[1311] [1312] [1313] [1314] [1315] [1316] [1317] [1318] [1319] [1320] [1321]
[1322] [1323]
Underfull \hbox (badness 2503) in paragraph at lines 3323--3326
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1324] [1325] [1326] [1327] [1328] [1329] [1330] [1331] [1332] [1333] [1334]
[1335] [1336] [1337] [1338] [1339] [1340] [1341] [1342] [1343]
Underfull \hbox (badness 3989) in paragraph at lines 4548--4555
[]\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 
(\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/
it/10 g[] \OT1/cmr/m/n/10 =
[1344] [1345] [1346] [1347] [1348] [1349] [1350] [1351] [1352] [1353]
Underfull \hbox (badness 2556) in paragraph at lines 5149--5152
[]\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/
ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p
tm/m/n/10 . For

Underfull \hbox (badness 2932) in paragraph at lines 5166--5168
[]\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se-
quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is 
given by
[1354] [1355] [1356] [1357]
Underfull \hbox (badness 1142) in paragraph at lines 5407--5419
\T1/ptm/m/n/10 For \T1/zi4/m/n/10 cov()\T1/ptm/m/n/10 , a non-Pearson method is
 un-usual but avail-able for the sake of com-plete-ness.
[1358] [1359]
Underfull \hbox (badness 2503) in paragraph at lines 5546--5550
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1360]
Underfull \hbox (badness 1168) in paragraph at lines 5607--5612
[]\T1/ptm/m/n/10 For Spear-man's test, p-values are com-puted us-ing al-go-rith
m AS 89 for $\OML/cmm/m/it/10 n < \OT1/cmr/m/n/10 1290$ \T1/ptm/m/n/10 and
[1361] [1362] [1363] [1364] [1365] [1366] [1367]
Underfull \hbox (badness 8132) in paragraph at lines 6049--6054
\T1/ptm/m/n/10 then \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is a den-dro-gram of the sa
me graph struc-ture as \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and for each node,
[1368] [1369] [1370] [1371] [1372]
Underfull \hbox (badness 7081) in paragraph at lines 6324--6327
[]\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be
 con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method

Underfull \hbox (badness 10000) in paragraph at lines 6328--6330
[]\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra
m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also
[1373] [1374] [1375] [1376] [1377]
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[1379] [1380] [1381] [1382] [1383] [1384] [1385]
Underfull \hbox (badness 10000) in paragraph at lines 7136--7139
[]\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T
1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the
[1386] [1387]
Underfull \hbox (badness 10000) in paragraph at lines 7273--7276
[]\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/zi4/m/n/10 ht
tps : / / cran . r-[]project . org / web / views /
[1388] [1389] [1390] [1391]
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[1393] [1394] [1395] [1396] [1397] [1398] [1399] [1400] [1401] [1402] [1403]
[1404] [1405] [1406] [1407] [1408] [1409] [1410] [1411] [1412]
Underfull \hbox (badness 2626) in paragraph at lines 8771--8774
[]\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/
m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If
[1413]
Underfull \hbox (badness 2503) in paragraph at lines 8871--8875
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1414] [1415] [1416] [1417] [1418]
Overfull \hbox (6.88992pt too wide) in paragraph at lines 9205--9207
[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Fligner-Killeen test of
 homogeneity of variances"\T1/ptm/m/n/10 . 
[1419] [1420] [1421] [1422] [1423] [1424] [1425] [1426] [1427] [1428] [1429]
[1430] [1431] [1432] [1433]
Underfull \hbox (badness 4518) in paragraph at lines 10132--10137
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1434] [1435] [1436] [1437]
Underfull \hbox (badness 2142) in paragraph at lines 10474--10477
[]\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p
tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1
0 dev \OMS/cmsy/m/n/10 ^^@
[1438]
Underfull \hbox (badness 1253) in paragraph at lines 10493--10496
[]\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][
]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it-
er-a-tion. Hence,
[1439]
Underfull \hbox (badness 1708) in paragraph at lines 10555--10559
[]\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter-
na-tives are:
[1440] [1441] [1442] [1443] [1444] [1445]
Underfull \hbox (badness 1694) in paragraph at lines 10951--10954
[]\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these 
de-fault to

Underfull \hbox (badness 1867) in paragraph at lines 10970--10979
\T1/ptm/m/n/10 in the row case. If ei-ther is miss-ing, as by de-fault, then th
e or-der-ing of the cor-re-
[1446] [1447] [1448] [1449] [1450] [1451] [1452] [1453]pdfTeX warning (ext4): d
estination with the same identifier (name{Rfn.hat}) has been already used, dupl
icate ignored
<to be read again> 
                   \relax 
l.11417 \aliasA{hat}{influence.measures}{hat}
                                              [1454] [1455]
Underfull \hbox (badness 1484) in paragraph at lines 11540--11542
[]\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main
ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing
[1456] [1457] [1458] [1459] [1460] [1461] [1462] [1463] [1464]
Underfull \hbox (badness 4441) in paragraph at lines 12098--12100
[]\T1/ptm/m/n/10 vector of dif-fer-enc-ing co-ef-fi-cients, so an ARMA model is
 fit-ted to

Underfull \hbox (badness 10000) in paragraph at lines 12105--12107
[]\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa
ult[][][] \T1/ptm/m/n/10 when
[1465] [1466] [1467] [1468] [1469] [1470]
Underfull \hbox (badness 2894) in paragraph at lines 12439--12443
[]\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f
ault method
[1471] [1472] [1473] [1474] [1475] [1476] [1477] [1478] [1479] [1480] [1481]
Underfull \hbox (badness 4518) in paragraph at lines 13134--13139
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1482] [1483] [1484] [1485] [1486] [1487] [1488] [1489] [1490] [1491]
Underfull \hbox (badness 4518) in paragraph at lines 13781--13786
[]\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co
-ercible by
[1492] [1493]
Underfull \hbox (badness 10000) in paragraph at lines 13919--13923
[]\T1/ptm/m/n/10 Only for the (de-fault) case \T1/zi4/m/n/10 (surface =

Underfull \hbox (badness 1199) in paragraph at lines 13926--13928
[]\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on
ly if \T1/zi4/m/n/10 family \T1/ptm/m/n/10 is
[1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504]
[1505] [1506] [1507] [1508] [1509] [1510] [1511]
Underfull \hbox (badness 2503) in paragraph at lines 14990--14994
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1512] [1513] [1514] [1515] [1516] [1517] [1518] [1519]
Underfull \hbox (badness 1418) in paragraph at lines 15499--15505
[]\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response 
\T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(, "offset") \T1
/ptm/m/n/10 and
[1520] [1521] [1522] [1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530]
[1531] [1532] [1533] [1534] [1535] [1536] [1537] [1538] [1539] [1540] [1541]
[1542] [1543] [1544] [1545]
Underfull \hbox (badness 2359) in paragraph at lines 17123--17125
[]\T1/ptm/m/n/10 Douglas M. Bates and Saikat De-bRoy: David M. Gay for the For-
tran code used by
[1546] [1547]
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Underfull \vbox (badness 10000) has occurred while \output is active [1549]
[1550] [1551] [1552] [1553] [1554] [1555] [1556] [1557] [1558] [1559] [1560]
[1561]
Underfull \hbox (badness 1377) in paragraph at lines 18034--18039
[]\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz
a-tion is per-formed on

Underfull \hbox (badness 1735) in paragraph at lines 18039--18042
[]\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma
-tion to the gra-di-ent, on

Underfull \hbox (badness 1184) in paragraph at lines 18052--18056
\T1/ptm/m/n/10 value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + reltol
) \T1/ptm/m/n/10 at a step. De-faults to

Underfull \hbox (badness 2662) in paragraph at lines 18060--18064
[]\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt
m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \
T1/ptm/m/n/10 meth-ods if
[1562] [1563] [1564]
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[1566] [1567] [1568] [1569] [1570] [1571]
Underfull \hbox (badness 1337) in paragraph at lines 18676--18679
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1572] [1573] [1574] [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582]
[1583] [1584]
Underfull \hbox (badness 5563) in paragraph at lines 19406--19408
[]\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , add to al-read
y ex-ist-ing plot. Only valid for

Underfull \hbox (badness 1194) in paragraph at lines 19409--19412
[]\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting
 of the con-fi-dence
[1585] [1586] [1587] [1588] [1589] [1590]
Underfull \hbox (badness 2503) in paragraph at lines 19776--19779
[]\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of 
\T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 ,
[1591]
Underfull \hbox (badness 10000) in paragraph at lines 19803--19805
[]\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1
/ptm/m/n/10 or
[1592] [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601] [1602]
[1603] [1604] [1605] [1606] [1607]
Underfull \hbox (badness 10000) in paragraph at lines 20803--20809
[]\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][
][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 ,
[1608] [1609] [1610] [1611] [1612] [1613] [1614] [1615] [1616] [1617] [1618]
[1619] [1620] [1621] [1622] [1623] [1624] [1625] [1626] [1627] [1628] [1629]
[1630]
Underfull \hbox (badness 1337) in paragraph at lines 22138--22144
[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1631] [1632] [1633] [1634] [1635] [1636] [1637] [1638] [1639] [1640] [1641]
[1642]
Underfull \hbox (badness 10000) in paragraph at lines 22931--22934
[]\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by
[1643] [1644] [1645] [1646] [1647] [1648] [1649] [1650] [1651]
Underfull \hbox (badness 10000) in paragraph at lines 23508--23511
[]\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run
med(x, k) \T1/ptm/m/n/10 sim-ply has
[1652]
Underfull \hbox (badness 3690) in paragraph at lines 23559--23563
[][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's
 end point rule and is called by de-fault from
[1653] [1654] [1655] [1656] [1657] [1658] [1659] [1660]
Underfull \hbox (badness 3439) in paragraph at lines 24029--24035
[][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSasympO
rig[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSbiexp[][][]\T1/ptm/m/n/10 , [][]
\T1/zi4/m/n/10 SSfol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSfpl[][][]\T1/pt
m/m/n/10 , [][]\T1/zi4/m/n/10 SSgompertz[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/
10 SSlogis[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSmicmen[][][]\T1/ptm/m/n/1
0 ,
[1661] [1662] [1663] [1664] [1665] [1666] [1667] [1668] [1669]
Underfull \hbox (badness 10000) in paragraph at lines 24577--24582
[]\T1/ptm/m/n/10 integer or [][]\T1/zi4/m/n/10 function[][][] \T1/ptm/m/n/10 gi
v-ing the num-ber of knots to use when
[1670] [1671] [1672] [1673] [1674] [1675] [1676] [1677] [1678] [1679] [1680]
[1681] [1682] [1683] [1684]
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[1686]
Underfull \hbox (badness 3514) in paragraph at lines 25593--25598
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1687]
Underfull \hbox (badness 3514) in paragraph at lines 25655--25660
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1688]
Underfull \hbox (badness 3514) in paragraph at lines 25712--25717
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1689]
Underfull \hbox (badness 3514) in paragraph at lines 25773--25779
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1690] [1691] [1692] [1693]
Underfull \hbox (badness 3514) in paragraph at lines 25986--25991
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion

Underfull \hbox (badness 3514) in paragraph at lines 26042--26047
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1694]
Underfull \hbox (badness 3514) in paragraph at lines 26099--26104
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1695]
Underfull \hbox (badness 3514) in paragraph at lines 26154--26159
[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\
T1/ptm/m/n/10 . It is the value of the ex-pres-sion
[1696] [1697]
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[]\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p
tm/m/n/10 . It is the value of the ex-pres-sion
[1698] [1699] [1700] [1701] [1702] [1703] [1704] [1705]
Underfull \hbox (badness 10000) in paragraph at lines 26747--26750
[]\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-

Underfull \hbox (badness 10000) in paragraph at lines 26747--26750
\T1/ptm/m/n/10 trac-tion, which should be odd. If \T1/zi4/m/n/10 NULL\T1/ptm/m/
n/10 , the de-fault,
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[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1716] [1717] [1718] [1719]
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[]\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z
i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if
[1720] [1721] [1722] [1723] [1724]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1725] [1726]
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[]\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/
10 ; cur-rently ex-cept for \T1/zi4/m/n/10 rt()\T1/ptm/m/n/10 , only for
[1727] [1728] [1729]
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[]\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial
 resid-u-als, when
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[]\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z
i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect
[1749] [1750] [1751]
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[1753] [1754]
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
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[]\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth-
e-sis, must be one of
[1763]
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[]\T1/ptm/m/n/10 an es-ti-mate of the lo-ca-tion pa-ram-e-ter. (Only present if
 ar-gu-ment
[1764] [1765] [1766] [1767] [1768] [1769]
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[]\T1/ptm/m/n/10 There is a \T1/zi4/m/n/10 summary \T1/ptm/m/n/10 method for co
n-tin-gency ta-ble ob-jects cre-ated by \T1/zi4/m/n/10 table \T1/ptm/m/n/10 or
[1770] [1771] [1772]) (./stats4-pkg.tex
Chapter 11.
[1773] [1774] [1775] [1776] [1777] [1778]pdfTeX warning (ext4): destination wit
h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup
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<to be read again> 
                   \relax 
l.407 ...Package \pkg{stats4}}{show.Rdash.methods}
                                                   [1779] [1780] [1781]
[1782]) (./tcltk-pkg.tex
Chapter 12.
[1783] [1784] [1785] [1786] [1787] [1788] [1789]
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[]\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing
 any Tk or Tcl com-mand by sim-ply run-ning
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[][][]\T1/zi4/m/n/10 select.list[][][] \T1/ptm/m/n/10 (a text ver-sion ex-cept 
on Win-dows and the OS X GUI), [][]\T1/zi4/m/n/10 menu[][][] \T1/ptm/m/n/10 (wh
ose
[1803]) (./tools-pkg.tex [1804]
Chapter 13.
[1805]

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[1806]
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[]\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b
e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas
[1807] [1808]
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[]\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t
o ren-der each of the 12 types

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\T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe
ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de-

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\T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee
dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1
0 formatMastersthesis\T1/ptm/m/n/10 ,

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\T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm
/m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma
tTechreport \T1/ptm/m/n/10 and
[1809] [1810]
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[]\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine 
to use. Over-rides any
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[]\T1/ptm/m/n/10 Delete files in the tem-po-rary di-rec-tory? This op-tion is i
g-nored when
[1822]
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\T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe
n-den-cies (de-
[1823]
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[]\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v
erse de-pen-den-cies

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[]\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a 
pre-vi-ous

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[]\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing


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\T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z
i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 ,
[1824] [1825] [1826]
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[]\T1/ptm/m/n/10 Re-save PDF files (es-pe-cially vi-gnettes) more com-pactly. S
up-port func-tion for
[1827] [1828] [1829]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of

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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br
ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see
[1830] [1831] [1832] [1833]pdfTeX warning (ext4): destination with the same ide
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l.1721 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD}
                                                   [1834] [1835]
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[]\T1/ptm/m/n/10 If \T1/zi4/m/n/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/n/10 TRUE
\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/n/10 De
pendsList \T1/ptm/m/n/10 ob-ject

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\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a
 sub-set of
[1844] [1845] [1846] [1847]

LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined
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[]\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t
or of links, as re-turned by
[1852] [1853] [1854] [1855] [1856] [1857] [1858] [1859] [1860] [1861] [1862]
Underfull \hbox (badness 10000) in paragraph at lines 3539--3541
[]\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run
,
[1863] [1864] [1865] [1866] [1867] [1868]
Underfull \hbox (badness 1838) in paragraph at lines 3919--3925
[]\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p
o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists.
 The

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\T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in 
the pack-age are ex-am-ined to cre-ate a file
[1869] [1870]
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[]\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/sl/10 TR
UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/sl/10
 DependsList \T1/ptm/m/n/10 ob-ject

Underfull \hbox (badness 7221) in paragraph at lines 3999--4004
\T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo
r in-stance if there was
[1871] [1872]
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[]\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to be used in the `\T
1/zi4/m/sl/10 PACKAGES\T1/ptm/m/n/10 ' and
[1873] [1874] [1875] [1876]) (./utils-pkg.tex
Chapter 14.
[1877]
Underfull \hbox (badness 2556) in paragraph at lines 47--52
[]\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T
1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ',
[1878] [1879]
Underfull \hbox (badness 1454) in paragraph at lines 197--200
[]\T1/ptm/m/n/10 logical in-di-cat-ing if the search should be case-insensitive
, \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 by de-

Underfull \hbox (badness 1540) in paragraph at lines 213--216
[]\T1/zi4/m/sl/10 find \T1/ptm/m/n/10 is a dif-fer-ent user in-ter-face for the
 same task as \T1/zi4/m/sl/10 apropos\T1/ptm/m/n/10 . How-ever, by de-fault
[1880] [1881] [1882] [1883] [1884] [1885]
Underfull \hbox (badness 10000) in paragraph at lines 543--549
[]\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1
0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 ,

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\T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel
l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the
[1886]
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[]\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to
 se-lect which of the pack-ages on the repos-i-to-

Underfull \hbox (badness 4229) in paragraph at lines 656--662
\T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi
4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as
[1887]
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[]\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O
S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/
10 "License_is_FOSS"\T1/ptm/m/n/10 ,
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
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[]\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th
is func-tion is in-voked for its side ef-fect of up-dat-ing
[1905] [1906]
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[]\T1/ptm/m/n/10 One can in-clude an auto-generated pack-age ci-ta-tion in the 
`\T1/zi4/m/sl/10 CITATION\T1/ptm/m/n/10 ' file via
[1907]
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[]\T1/ptm/m/n/10 A list of keys that have been pre-vi-ously cited, to be used w
hen
[1908] [1909] [1910] [1911]
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[]\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sim-pli-fied to
 an [][]\T1/zi4/m/sl/10 array[][][] \T1/ptm/m/n/10 (typ-i-

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[]\T1/ptm/m/n/10 a [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4
/m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m
/n/10 ar-gu-ment above. In the lat-ter case, the iden-tity
[1912] [1913] [1914] [1915] [1916] [1917] [1918] [1919] [1920] [1921] [1922]
[1923] [1924] [1925] [1926]
Underfull \hbox (badness 1412) in paragraph at lines 3235--3239
[]\T1/ptm/m/n/10 The \T1/zi4/m/sl/10 "libcurl" \T1/ptm/m/n/10 and \T1/zi4/m/sl/
10 "wget" \T1/ptm/m/n/10 meth-ods fol-low `\T1/zi4/m/sl/10 http://\T1/ptm/m/n/1
0 ' and `\T1/zi4/m/sl/10 https://\T1/ptm/m/n/10 ' redi-rec-tions: the
[1927]
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[]\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by
 the \T1/zi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the

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[]\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers 
via en-vi-ron-ment vari-able
[1928] [1929] [1930] [1931] [1932] [1933] [1934] [1935] [1936] [1937] [1938]
[1939] [1940] [1941]pdfTeX warning (ext4): destination with the same identifier
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<to be read again> 
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l.4123 ...mat Unordered and Ordered Lists}{format}
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                                                   [1942] [1943] [1944]
[1945] [1946] [1947] [1948] [1949] [1950] [1951] [1952] [1953] [1954] [1955]
[1956]
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[]\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T
1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to
[1957]
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[]\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words
'. `Key-

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\T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are 
listed in file
[1958] [1959] [1960]
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[]\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de
x,
[1961]
Underfull \hbox (badness 2150) in paragraph at lines 5398--5401
[]\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion 
to search. See
[1962] [1963]
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[]\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion `
Lock-ing' in the help for
[1964]
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[]\T1/ptm/m/n/10 To in-stall a source pack-age with com-piled code only for the
 sub-architecture used by
[1965]
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[]\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/sl/10 available.packag
es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able
[1966]
Underfull \hbox (badness 10000) in paragraph at lines 5759--5762
[]\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to
 be passed

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\T1/ptm/m/n/10 to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a source pac
k-age in-stall. E.g.,
[1967]
Underfull \hbox (badness 3219) in paragraph at lines 5832--5839
[]\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/sl/
10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail-

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\T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there
 are source pack-ages

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\T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com
-piled is con-trolled by
[1968]
Underfull \hbox (badness 10000) in paragraph at lines 5912--5917
[][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10
 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages
[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/
10 ,
[1969] [1970] [1971] [1972] [1973] [1974] [1975] [1976] [1977] [1978] [1979]
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defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-FAQ.aux)
(/usr/share/texmf/tex/texinfo/txi-en.tex) [1{/var/lib/texmf/fonts/map/pdftex/up
dmap/pdftex.map}] (./R-FAQ.toc [-1] [-2]) [-3] (./R-FAQ.toc) (./R-FAQ.toc)
Chapter 1 [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] Chapter 3 [10] [11]
[12] [13] [14] [15] [16] [17] Chapter 4 [18] [19] Chapter 5 [20] [21] [22]
[23] [24] Chapter 6 [25] [26] Chapter 7 [27] [28] [29] [30] [31] [32] [33]
[34] [35] [36] [37] [38] [39] [40] [41]
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Chapter 8 [42] Chapter 9 [43] [44] Chapter 10 [45] [46] [47] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
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blic/amsfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
mmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/te
xlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/
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f-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts
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/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/type1/publi
c/amsfonts/cm/cmtt9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfo
nts/latxfont/lcircle1.pfb>
Output written on R-FAQ.pdf (51 pages, 380797 bytes).
Transcript written on R-FAQ.log.
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entering extended mode
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Loading texinfo [version 2015-06-24.23]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-FAQ.aux)
(/usr/share/texmf/tex/texinfo/txi-en.tex) [1{/var/lib/texmf/fonts/map/pdftex/up
dmap/pdftex.map}] (./R-FAQ.toc [-1] [-2]) [-3] (./R-FAQ.toc) (./R-FAQ.toc)
Chapter 1 [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] Chapter 3 [10] [11]
[12] [13] [14] [15] [16] [17] Chapter 4 [18] [19] Chapter 5 [20] [21] [22]
[23] [24] Chapter 6 [25] [26] Chapter 7 [27] [28] [29] [30] [31] [32] [33]
[34] [35] [36] [37] [38] [39] [40] [41]
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@texttt download.file()[] @textrm func-tion), a down-load method is cho-sen bas
ed on the

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 []@texttt options(download.file.method = "wininet", url.method = "wininet")   
  @textrm (Windows)[] 

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 []@texttt options(download.file.method = "libcurl", url.method = "libcurl")   
  @textrm (Linux and OS X)[] 
Chapter 8 [42] Chapter 9 [43] [44] Chapter 10 [45] [46] [47] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmcsc10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmex10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
mmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/
share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/te
xlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/
texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texm
f-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist
/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts
/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1
/public/amsfonts/cm/cmtt12.pfb></usr/share/texlive/texmf-dist/fonts/type1/publi
c/amsfonts/cm/cmtt9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfo
nts/latxfont/lcircle1.pfb>
Output written on R-FAQ.pdf (51 pages, 380797 bytes).
Transcript written on R-FAQ.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-admin.texi
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Loading texinfo [version 2015-06-24.23]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
(./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1
[1] Chapter 2 [2] Cross reference values unknown; you must run TeX again.
[3] [4] [5] [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] [15] [16]
[17] [18] Chapter 4 [19] [20]
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@texttt org.r-project.R.x86_64.GUI.pkg[]@textrm , @texttt org.r-project.x86_64.
tcltk.x11[] @textrm and
[21] Chapter 5 [22] Chapter 6 [23]
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 []@texttt [1] "datasets"  "utils"     "grDevices" "graphics"  "stats"     "met
hods"[] 
[24] [25]
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[]@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age
s. No ad-di-
[26]
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[]@textrm The de-fault com-pil-ers spec-i-fied in @texttt /Library/Frameworks/R
.framework/Resources/etc/Makeconf[]
[27] [28] [29] [30]
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tt --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] 

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 []@texttt .../bin/x64/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --i
nstall=check:@textttsl pkg@texttt .log @textttsl pkg[] 
Chapter 7 [31] [32] [33] Chapter 8 [34] Chapter 9 [35] [36] [37] Appendix A
[38] [39] [40] [41] [42] [43] [44] [45] [46]
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 []@texttt ln -s /opt/acml5.1.0/gfortran64_mp/lib/libacml_mp.so @textttsl R_HOM
E@texttt /lib/libRblas.so[] 
[47] Appendix B [48] [49] [50] [51] [52] [53] Appendix C [54] [55] [56]
[57]
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[]@textrm Others have re-ported suc-cess with ver-sions 10.x and 11.x. % https:
//stat.ethz.ch/pipermail/r-
[58] [59] [60]
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ig:/usr/lib/pkgconfig[] 
[61] [62]
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/lib/pkgconfig[] 
[63]
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[]@textrm To see what com-pat-i-ble ver-sions of Java are cur-rently in-stalled
, run
[64]
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 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/jdk1.8.0_51.jdk/Contents
/Home[] 
[65] [66]
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@texttt LDFLAGS=-L/usr/local/lib/sparcv9[] @textrm or @texttt LDFLAGS=-L/usr/lo
cal/lib/amd64[] @textrm as

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onfig[] 

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 []@texttt JAVA_CPPFLAGS="-I${JAVA_HOME}/../include -I${JAVA_HOME}/../include/s
olaris"[] 
[67] [68] [69] [70] [71] [72] Appendix D [73] [74] [75]
(Function and variable index) [76] (Concept index) [77]
(Environment variable index) [78] [79] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmcsc10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmr7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/c
m/cmr8.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.p
fb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/s
hare/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-admin.pdf (82 pages, 459643 bytes).
Transcript written on R-admin.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/«PKGBUILDDIR»/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2015-06-24.23]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
(./R-admin.aux) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex))
(./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}]
[2] (./R-admin.toc [-1] [-2]) [-3] [-4] (./R-admin.toc) (./R-admin.toc)
Chapter 1 [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] Chapter 3
[12] [13] [14] [15] [16] [17] [18] Chapter 4 [19] [20]
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@texttt org.r-project.R.x86_64.GUI.pkg[]@textrm , @texttt org.r-project.x86_64.
tcltk.x11[] @textrm and
[21] Chapter 5 [22] Chapter 6 [23]
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 []@texttt [1] "datasets"  "utils"     "grDevices" "graphics"  "stats"     "met
hods"[] 
[24] [25]
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[]@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age
s. No ad-di-
[26]
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[]@textrm The de-fault com-pil-ers spec-i-fied in @texttt /Library/Frameworks/R
.framework/Resources/etc/Makeconf[]
[27] [28] [29] [30]
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 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl lib-dir @text
tt --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] 

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install=check:@textttsl pkg@texttt .log @textttsl pkg[] 

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 []@texttt .../bin/x64/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --i
nstall=check:@textttsl pkg@texttt .log @textttsl pkg[] 
Chapter 7 [31] [32] [33] Chapter 8 [34] Chapter 9 [35] [36] [37] Appendix A
[38] [39] [40] [41] [42] [43] [44] [45] [46]
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 []@texttt ln -s /opt/acml5.1.0/gfortran64_mp/lib/libacml_mp.so @textttsl R_HOM
E@texttt /lib/libRblas.so[] 
[47] Appendix B [48] [49] [50] [51] [52] [53] Appendix C [54] [55] [56]
[57]
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[]@textrm Others have re-ported suc-cess with ver-sions 10.x and 11.x. % https:
//stat.ethz.ch/pipermail/r-
[58] [59] [60]
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ig:/usr/lib/pkgconfig[] 
[61] [62]
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/lib/pkgconfig[] 
[63]
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[]@textrm To see what com-pat-i-ble ver-sions of Java are cur-rently in-stalled
, run
[64]
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 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/jdk1.8.0_51.jdk/Contents
/Home[] 
[65] [66]
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@texttt LDFLAGS=-L/usr/local/lib/sparcv9[] @textrm or @texttt LDFLAGS=-L/usr/lo
cal/lib/amd64[] @textrm as

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 []@texttt PKG_CONFIG_PATH=/opt/csw/lib/sparcv9/pkgconfig:/usr/lib/sparcv9/pkgc
onfig[] 

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 []@texttt JAVA_CPPFLAGS="-I${JAVA_HOME}/../include -I${JAVA_HOME}/../include/s
olaris"[] 
[67] [68] [69] [70] [71] [72] Appendix D [73] [74] [75]
(Function and variable index) [76] (./R-admin.vrs) (Concept index) [77]
(./R-admin.cps) (Environment variable index) [78] (./R-admin.ens) [79] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmcsc10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pu
blic/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/a
msfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cm
r10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb>
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/sh
are/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texl
ive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/te
xmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-
dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/f
onts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/t
ype1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cm/cmtt9.pfb>
Output written on R-admin.pdf (85 pages, 506091 bytes).
Transcript written on R-admin.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/«PKGBUILDDIR»/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2015-06-24.23]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.)
(./R-admin.aux) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex))
(./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}]
[2] (./R-admin.toc [-1] [-2]) [-3] [-4] (./R-admin.toc) (./R-admin.toc)
Chapter 1 [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] Chapter 3
[12] [13] [14] [15] [16] [17] [18] Chapter 4 [19] [20]
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@texttt org.r-project.R.x86_64.GUI.pkg[]@textrm , @texttt org.r-project.x86_64.
tcltk.x11[] @textrm and
[21] Chapter 5 [22] Chapter 6 [23]
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 []@texttt [1] "datasets"  "utils"     "grDevices" "graphics"  "stats"     "met
hods"[] 
[24] [25]
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[]@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age
s. No ad-di-
[26]
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[]@textrm The de-fault com-pil-ers spec-i-fied in @texttt /Library/Frameworks/R
.framework/Resources/etc/Makeconf[]
[27] [28] [29] [30]
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tt --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] 

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install=check:@textttsl pkg@texttt .log @textttsl pkg[] 

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 []@texttt .../bin/x64/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --i
nstall=check:@textttsl pkg@texttt .log @textttsl pkg[] 
Chapter 7 [31] [32] [33] Chapter 8 [34] Chapter 9 [35] [36] [37] Appendix A
[38] [39] [40] [41] [42] [43] [44] [45] [46]
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 []@texttt ln -s /opt/acml5.1.0/gfortran64_mp/lib/libacml_mp.so @textttsl R_HOM
E@texttt /lib/libRblas.so[] 
[47] Appendix B [48] [49] [50] [51] [52] [53] Appendix C [54] [55] [56]
[57]
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[]@textrm Others have re-ported suc-cess with ver-sions 10.x and 11.x. % https:
//stat.ethz.ch/pipermail/r-
[58] [59] [60]
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[61] [62]
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[63]
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[]@textrm To see what com-pat-i-ble ver-sions of Java are cur-rently in-stalled
, run
[64]
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[65] [66]
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cal/lib/amd64[] @textrm as

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onfig[] 

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 []@texttt JAVA_CPPFLAGS="-I${JAVA_HOME}/../include -I${JAVA_HOME}/../include/s
olaris"[] 
[67] [68] [69] [70] [71] [72] Appendix D [73] [74] [75]
(Function and variable index) [76] (./R-admin.vrs) (Concept index) [77]
(./R-admin.cps) (Environment variable index) [78] (./R-admin.ens) [79] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
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ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
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(Acknowledgements)
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[1] [2] Chapter 1 [3] Cross reference values unknown; you must run TeX again.
[4] [5] [6] [7] Chapter 2 [8] [9] [10] [11] [12] [13] [14] Chapter 3 [15]
[16] Chapter 4 [17] [18] [19] [20] [21] [22] [23] Chapter 5 [24] Chapter 6
[25] Chapter 7 [26] [27] [28] [29] [30] Chapter 8 [31] Chapter 9 [32]
Appendix A [33] (Function and variable index) [34] (Concept index) [35]
[36] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/ams
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) localization, formatting, and turning on texinfo input format.) (./R-data.aux
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[1] [2] Chapter 1 [3] [4] [5] [6] [7] Chapter 2 [8] [9] [10] [11] [12] [13]
[14] Chapter 3 [15] [16] Chapter 4 [17] [18] [19] [20] [21] [22] [23]
Chapter 5 [24] Chapter 6 [25] Chapter 7 [26] [27] [28] [29] [30] Chapter 8
[31] Chapter 9 [32] Appendix A [33] (Function and variable index) [34]
(./R-data.vrs [35]) (Concept index) [36] (./R-data.cps) [37] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
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[1] [2] Chapter 1 [3] [4] [5] [6] [7] Chapter 2 [8] [9] [10] [11] [12] [13]
[14] Chapter 3 [15] [16] Chapter 4 [17] [18] [19] [20] [21] [22] [23]
Chapter 5 [24] Chapter 6 [25] Chapter 7 [26] [27] [28] [29] [30] Chapter 8
[31] Chapter 9 [32] Appendix A [33] (Function and variable index) [34]
(./R-data.vrs [35]) (Concept index) [36] (./R-data.cps) [37] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
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Output written on R-data.pdf (41 pages, 315439 bytes).
Transcript written on R-data.log.
TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-exts.texi
This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdfetex)
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page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
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) localization, formatting, and turning on texinfo input format.)
(./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
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(Acknowledgements) Chapter 1 [1]
Cross reference values unknown; you must run TeX again. [2] [3] [4] [5]
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[]@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t
exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo
[]@textrm '[] and
[6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21]
[22] [23]
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 []@textrm [@texttt libRlapack[] @textrm in-cludes all the double-precision LA-
PACK rou-tines

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 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF
LAGS)[] 
[24] [25] [26] [27]
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 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 

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 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[28] [29]
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 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar
e defined.[]  
[30] [31] [32]
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[][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v
er-sions such as @smalltt ~/.R/check.Renviron.i386[]
[33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47]
[48] [49] [50] [51] [52] [53] [54] [55] [56] [57]
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 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@
euro"[] 
[58] [59] [60] [61]
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 []@texttt #define dngettext(pkg, String, StringP, N) (N > 1 ? StringP : String
)[] 
[62] [63] Chapter 2 [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74]
[75] [76] [77] [78]
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[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[79] [80] [81] [82]
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[]@textrm As of R ver-sion 3.2.0, a num-ber of macros are de-fined in the file
[83] [84] Chapter 3 [85] [86] [87] [88] [89] [90]
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 []                 @texttt as.integer(runif(N, 1, 12)), as.integer(runif(N, 1,
 28)))[] 
[91] [92] [93] Chapter 4 [94] [95] [96]
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 []@texttt evaluation nested too deeply: infinite recursion / options(expressio
ns=)?[] 
[97]
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 []@smalltt Message:  Error: no valid set of coefficients has been found: pleas
e supply starting values[] 
[98]
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 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star
t, etastart = etastart,[] 

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[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g. @texttt debug(stats:::predict.Arima)[]@textrm .
[99] [100] [101] [102] [103] [104]
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odr_violation=0'[] 

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[]@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by @t
exttt -fsanitize=undefined,address[]
[105] [106]
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 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u
pper bound of 0[] 

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 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl
assi,[] 

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cu)),[] 
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 []@texttt #5  0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9
698f98,[] 
[109] [110] Chapter 5 [111] [112] [113] [114] [115] [116] [117] [118] [119]
[120] [121] [122] [123]
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 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[124] [125] [126] [127] [128] [129] [130] [131] [132] [133]
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 []    @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL
SE");[] 
[134]
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[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[135] [136] [137] [138] [139] [140]
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 []    @texttt // a version with (too) much PROTECT()ion .. "better safe than s
orry"[] 
[141] [142]
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 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 
[143]
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s)) {[] 

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a)));[] 

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 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 
[144] [145] [146]
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 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one
xit);[] 
[147]
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 []    @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
NilValue);[] 
[148] [149]
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 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_SYMBOL, CE_ANY} cety
pe_t;[] 
Chapter 6 [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160]
[161] [162] [163] [164] [165] [166] [167] [168] [169] Chapter 7 [170] [171]
Chapter 8 [172] [173] [174]
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 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s
tatic libR[] 
[175]
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 []@texttt extern int  (*ptr_R_ReadConsole)(const char *, unsigned char *, int,
 int);[] 

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 []@texttt extern int  (*ptr_R_EditFiles)(int, const char **, const char **, co
nst char *);[] 
[176] [177] [178]
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 @texttt modules/internet/nanoftp.c[]@textrm , @texttt src/modules/internet/nan
ohttp.c[] @textrm and @texttt src/
[179] [180] [181] [182] [183] [184]
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 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R
-core\R32[] @textrm or

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(Function and variable index) [185] (Concept index) [186] [187] )
(see the transcript file for additional information) </home/buildd/.texmf-var/f
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r/share/texlive/texmf-dist/fonts/type1/public/amsfonts/latxfont/lcircle1.pfb>
Output written on R-exts.pdf (190 pages, 839627 bytes).
Transcript written on R-exts.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/«PKGBUILDDIR»/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2015-06-24.23]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-exts.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-exts.toc
[-1] [-2] [-3] [-4]) [-5] (./R-exts.toc) (./R-exts.toc) (Acknowledgements)
Chapter 1 [1] [2] [3] [4] [5]
Underfull \hbox (badness 10000) in paragraph at lines 494--497
[]@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t
exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo
[]@textrm '[] and
[6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21]
[22] [23]
Underfull \hbox (badness 10000) in paragraph at lines 1820--1823
 []@textrm [@texttt libRlapack[] @textrm in-cludes all the double-precision LA-
PACK rou-tines

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 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF
LAGS)[] 
[24] [25] [26] [27]
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 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 

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 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[28] [29]
Overfull \hbox (16.92342pt too wide) in paragraph at lines 2303--2303
 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar
e defined.[]  
[30] [31] [32]
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[][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v
er-sions such as @smalltt ~/.R/check.Renviron.i386[]
[33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47]
[48] [49] [50] [51] [52] [53] [54] [55] [56] [57]
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 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@
euro"[] 
[58] [59] [60] [61]
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 []@texttt #define dngettext(pkg, String, StringP, N) (N > 1 ? StringP : String
)[] 
[62] [63] Chapter 2 [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74]
[75] [76] [77] [78]
Underfull \hbox (badness 10000) in paragraph at lines 6018--6025
[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[79] [80] [81] [82]
Underfull \hbox (badness 10000) in paragraph at lines 6337--6341
[]@textrm As of R ver-sion 3.2.0, a num-ber of macros are de-fined in the file
[83] [84] Chapter 3 [85] [86] [87] [88] [89] [90]
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 []                 @texttt as.integer(runif(N, 1, 12)), as.integer(runif(N, 1,
 28)))[] 
[91] [92] [93] Chapter 4 [94] [95] [96]
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 []@texttt evaluation nested too deeply: infinite recursion / options(expressio
ns=)?[] 
[97]
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 []@smalltt Message:  Error: no valid set of coefficients has been found: pleas
e supply starting values[] 
[98]
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 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star
t, etastart = etastart,[] 

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[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g. @texttt debug(stats:::predict.Arima)[]@textrm .
[99] [100] [101] [102] [103] [104]
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 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_
odr_violation=0'[] 

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[]@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by @t
exttt -fsanitize=undefined,address[]
[105] [106]
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 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u
pper bound of 0[] 

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 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl
assi,[] 

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 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t(
cu)),[] 
[107] [108]
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 []@texttt #5  0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9
698f98,[] 
[109] [110] Chapter 5 [111] [112] [113] [114] [115] [116] [117] [118] [119]
[120] [121] [122] [123]
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 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[124] [125] [126] [127] [128] [129] [130] [131] [132] [133]
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 []    @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL
SE");[] 
[134]
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[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[135] [136] [137] [138] [139] [140]
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 []    @texttt // a version with (too) much PROTECT()ion .. "better safe than s
orry"[] 
[141] [142]
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 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 
[143]
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 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 

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 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 

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 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 
[144] [145] [146]
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 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one
xit);[] 
[147]
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 []    @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
NilValue);[] 
[148] [149]
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 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_SYMBOL, CE_ANY} cety
pe_t;[] 
Chapter 6 [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160]
[161] [162] [163] [164] [165] [166] [167] [168] [169] Chapter 7 [170] [171]
Chapter 8 [172] [173] [174]
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 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s
tatic libR[] 
[175]
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 []@texttt extern int  (*ptr_R_ReadConsole)(const char *, unsigned char *, int,
 int);[] 

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 []@texttt extern int  (*ptr_R_EditFiles)(int, const char **, const char **, co
nst char *);[] 
[176] [177] [178]
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 @texttt modules/internet/nanoftp.c[]@textrm , @texttt src/modules/internet/nan
ohttp.c[] @textrm and @texttt src/
[179] [180] [181] [182] [183] [184]
Underfull \hbox (badness 10000) in paragraph at lines 13985--13989
 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R
-core\R32[] @textrm or
(Function and variable index) [185] (./R-exts.vrs [186] [187] [188])
(Concept index) [189] (./R-exts.cps [190]) [191] )
(see the transcript file for additional information) </home/buildd/.texmf-var/f
onts/pk/ljfour/jknappen/ec/ecrm1095.603pk></usr/share/texlive/texmf-dist/fonts/
type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/
amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfon
ts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/
cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi9.p
fb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></us
r/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/
texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texlive/
texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/texmf-di
st/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/texlive/texmf-dist/fonts/t
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s/cm/cmti10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
mti9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.p
fb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb></usr/shar
e/texlive/texmf-dist/fonts/type1/public/amsfonts/latxfont/lcircle1.pfb>
Output written on R-exts.pdf (198 pages, 901156 bytes).
Transcript written on R-exts.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/«PKGBUILDDIR»/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2015-06-24.23]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-exts.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-exts.toc
[-1] [-2] [-3] [-4]) [-5] (./R-exts.toc) (./R-exts.toc) (Acknowledgements)
Chapter 1 [1] [2] [3] [4] [5]
Underfull \hbox (badness 10000) in paragraph at lines 494--497
[]@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t
exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo
[]@textrm '[] and
[6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21]
[22] [23]
Underfull \hbox (badness 10000) in paragraph at lines 1820--1823
 []@textrm [@texttt libRlapack[] @textrm in-cludes all the double-precision LA-
PACK rou-tines

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 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF
LAGS)[] 
[24] [25] [26] [27]
Overfull \hbox (67.78206pt too wide) in paragraph at lines 2162--2162
 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 

Overfull \hbox (53.60722pt too wide) in paragraph at lines 2164--2164
 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[28] [29]
Overfull \hbox (16.92342pt too wide) in paragraph at lines 2303--2303
 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar
e defined.[]  
[30] [31] [32]
Overfull \hbox (2.98494pt too wide) in paragraph at lines 2526--2528
[][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v
er-sions such as @smalltt ~/.R/check.Renviron.i386[]
[33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47]
[48] [49] [50] [51] [52] [53] [54] [55] [56] [57]
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 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@
euro"[] 
[58] [59] [60] [61]
Overfull \hbox (13.62822pt too wide) in paragraph at lines 4764--4764
 []@texttt #define dngettext(pkg, String, StringP, N) (N > 1 ? StringP : String
)[] 
[62] [63] Chapter 2 [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74]
[75] [76] [77] [78]
Underfull \hbox (badness 10000) in paragraph at lines 6018--6025
[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[79] [80] [81] [82]
Underfull \hbox (badness 10000) in paragraph at lines 6337--6341
[]@textrm As of R ver-sion 3.2.0, a num-ber of macros are de-fined in the file
[83] [84] Chapter 3 [85] [86] [87] [88] [89] [90]
Overfull \hbox (20.69044pt too wide) in paragraph at lines 6939--6939
 []                 @texttt as.integer(runif(N, 1, 12)), as.integer(runif(N, 1,
 28)))[] 
[91] [92] [93] Chapter 4 [94] [95] [96]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 7312--7312
 []@texttt evaluation nested too deeply: infinite recursion / options(expressio
ns=)?[] 
[97]
Overfull \hbox (25.25755pt too wide) in paragraph at lines 7352--7352
 []@smalltt Message:  Error: no valid set of coefficients has been found: pleas
e supply starting values[] 
[98]
Overfull \hbox (20.53261pt too wide) in paragraph at lines 7456--7456
 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star
t, etastart = etastart,[] 

Overfull \hbox (38.96663pt too wide) in paragraph at lines 7486--7495
[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g. @texttt debug(stats:::predict.Arima)[]@textrm .
[99] [100] [101] [102] [103] [104]
Overfull \hbox (78.17732pt too wide) in paragraph at lines 7878--7878
 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_
odr_violation=0'[] 

Overfull \hbox (29.50735pt too wide) in paragraph at lines 7909--7911
[]@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by @t
exttt -fsanitize=undefined,address[]
[105] [106]
Overfull \hbox (72.42863pt too wide) in paragraph at lines 8042--8042
 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u
pper bound of 0[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 8091--8091
 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl
assi,[] 

Overfull \hbox (14.94176pt too wide) in paragraph at lines 8094--8094
 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t(
cu)),[] 
[107] [108]
Overfull \hbox (26.43913pt too wide) in paragraph at lines 8173--8173
 []@texttt #5  0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9
698f98,[] 
[109] [110] Chapter 5 [111] [112] [113] [114] [115] [116] [117] [118] [119]
[120] [121] [122] [123]
Overfull \hbox (37.93651pt too wide) in paragraph at lines 9352--9352
 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[124] [125] [126] [127] [128] [129] [130] [131] [132] [133]
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 []    @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL
SE");[] 
[134]
Underfull \hbox (badness 10000) in paragraph at lines 10184--10186
[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[135] [136] [137] [138] [139] [140]
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 []    @texttt // a version with (too) much PROTECT()ion .. "better safe than s
orry"[] 
[141] [142]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 10816--10816
 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 
[143]
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 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 

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 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 

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 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 
[144] [145] [146]
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 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one
xit);[] 
[147]
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 []    @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
NilValue);[] 
[148] [149]
Overfull \hbox (14.94176pt too wide) in paragraph at lines 11281--11281
 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_SYMBOL, CE_ANY} cety
pe_t;[] 
Chapter 6 [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160]
[161] [162] [163] [164] [165] [166] [167] [168] [169] Chapter 7 [170] [171]
Chapter 8 [172] [173] [174]
Overfull \hbox (43.6852pt too wide) in paragraph at lines 13305--13305
 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s
tatic libR[] 
[175]
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 []@texttt extern int  (*ptr_R_ReadConsole)(const char *, unsigned char *, int,
 int);[] 

Overfull \hbox (55.18257pt too wide) in paragraph at lines 13353--13353
 []@texttt extern int  (*ptr_R_EditFiles)(int, const char **, const char **, co
nst char *);[] 
[176] [177] [178]
Underfull \hbox (badness 10000) in paragraph at lines 13596--13603
 @texttt modules/internet/nanoftp.c[]@textrm , @texttt src/modules/internet/nan
ohttp.c[] @textrm and @texttt src/
[179] [180] [181] [182] [183] [184]
Underfull \hbox (badness 10000) in paragraph at lines 13985--13989
 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R
-core\R32[] @textrm or
(Function and variable index) [185] (./R-exts.vrs [186] [187] [188])
(Concept index) [189] (./R-exts.cps [190]) [191] )
(see the transcript file for additional information) </home/buildd/.texmf-var/f
onts/pk/ljfour/jknappen/ec/ecrm1095.603pk></usr/share/texlive/texmf-dist/fonts/
type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fonts/type1/p
ublic/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/
amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfon
ts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/
cmmi7.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi9.p
fb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb></us
r/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7.pfb></usr/share/
texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb></usr/share/texlive/
texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></usr/share/texlive/texmf-di
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[-1] [-2] [-3] [-4]) [-5] (./R-exts.toc) (./R-exts.toc) (Acknowledgements)
Chapter 1 [1] [2] [3] [4] [5]
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[]@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t
exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo
[]@textrm '[] and
[6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21]
[22] [23]
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 []@textrm [@texttt libRlapack[] @textrm in-cludes all the double-precision LA-
PACK rou-tines

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 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF
LAGS)[] 
[24] [25] [26] [27]
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 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c
pp model/*/*.cpp model/*/*/*.cpp)[] 

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 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien
a07models.o $(SOURCES:.cpp=.o)[] 
[28] [29]
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 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar
e defined.[]  
[30] [31] [32]
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[][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v
er-sions such as @smalltt ~/.R/check.Renviron.i386[]
[33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47]
[48] [49] [50] [51] [52] [53] [54] [55] [56] [57]
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 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@
euro"[] 
[58] [59] [60] [61]
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 []@texttt #define dngettext(pkg, String, StringP, N) (N > 1 ? StringP : String
)[] 
[62] [63] Chapter 2 [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74]
[75] [76] [77] [78]
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[]@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi
lename@texttt }[] @textrm and
[79] [80] [81] [82]
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[]@textrm As of R ver-sion 3.2.0, a num-ber of macros are de-fined in the file
[83] [84] Chapter 3 [85] [86] [87] [88] [89] [90]
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 []                 @texttt as.integer(runif(N, 1, 12)), as.integer(runif(N, 1,
 28)))[] 
[91] [92] [93] Chapter 4 [94] [95] [96]
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 []@texttt evaluation nested too deeply: infinite recursion / options(expressio
ns=)?[] 
[97]
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 []@smalltt Message:  Error: no valid set of coefficients has been found: pleas
e supply starting values[] 
[98]
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 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star
t, etastart = etastart,[] 

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[]@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by
 e.g. @texttt debug(stats:::predict.Arima)[]@textrm .
[99] [100] [101] [102] [103] [104]
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 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_
odr_violation=0'[] 

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[]@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by @t
exttt -fsanitize=undefined,address[]
[105] [106]
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 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u
pper bound of 0[] 

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 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl
assi,[] 

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 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t(
cu)),[] 
[107] [108]
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 []@texttt #5  0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9
698f98,[] 
[109] [110] Chapter 5 [111] [112] [113] [114] [115] [116] [117] [118] [119]
[120] [121] [122] [123]
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 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH)
" -lpackB[] 
[124] [125] [126] [127] [128] [129] [130] [131] [132] [133]
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 []    @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL
SE");[] 
[134]
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[]@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated
3[] @textrm are fast ver-sions of R's
[135] [136] [137] [138] [139] [140]
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 []    @texttt // a version with (too) much PROTECT()ion .. "better safe than s
orry"[] 
[141] [142]
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 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 
[143]
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 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 

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 []    @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet
a)));[] 

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 []    @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an
s)) {[] 
[144] [145] [146]
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 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one
xit);[] 
[147]
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 []    @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_
NilValue);[] 
[148] [149]
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 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_SYMBOL, CE_ANY} cety
pe_t;[] 
Chapter 6 [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160]
[161] [162] [163] [164] [165] [166] [167] [168] [169] Chapter 7 [170] [171]
Chapter 8 [172] [173] [174]
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 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s
tatic libR[] 
[175]
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 []@texttt extern int  (*ptr_R_ReadConsole)(const char *, unsigned char *, int,
 int);[] 

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 []@texttt extern int  (*ptr_R_EditFiles)(int, const char **, const char **, co
nst char *);[] 
[176] [177] [178]
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 @texttt modules/internet/nanoftp.c[]@textrm , @texttt src/modules/internet/nan
ohttp.c[] @textrm and @texttt src/
[179] [180] [181] [182] [183] [184]
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 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R
-core\R32[] @textrm or
(Function and variable index) [185] (./R-exts.vrs [186] [187] [188])
(Concept index) [189] (./R-exts.cps [190]) [191] )
(see the transcript file for additional information) </home/buildd/.texmf-var/f
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TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-intro.texi
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Loading texinfo [version 2015-06-24.23]: pdf, fonts, markup, glyphs,
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This is `epsf.tex' v2.7.4 <14 February 2011>
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[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Preface)
Cross reference values unknown; you must run TeX again. Chapter 1 [1] [2]
[3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14]
Chapter 4 [15] [16] [17] Chapter 5 [18] [19] [20] [21] [22] [23] [24] [25]
[26] Chapter 6 [27] [28] [29] [30] Chapter 7 [31] [32] [33] Chapter 8 [34]
[35] [36] <./images/hist.pdf> <./images/ecdf.pdf> [37] <./images/QQ.pdf>
[38] <./images/ice.pdf> [39] [40] Chapter 9 [41] [42] Chapter 10 [43] [44]
[45] [46] [47] [48] [49] [50] [51] [52] Chapter 11 [53] [54] [55] [56] [57]
[58] [59] [60] [61] [62] [63] [64] [65] Chapter 12 [66] [67] [68] [69] [70]
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 []@texttt > text(x, y, expression(paste(bgroup("(", atop(n, x), ")"), p^x, q^{
n-x})))[] 
[71] [72] [73] [74] [75] <./images/fig11.pdf> [76] <./images/fig12.pdf>
[77] [78] [79] [80] Chapter 13 [81]
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[]@textrm Users con-nected to the In-ter-net can use the @texttt install.packag
es()[] @textrm and
[82] Chapter 14 [83] [84]
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 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t
extrm and
[85] Appendix A [86] [87] [88] [89] Appendix B [90] [91] [92] [93] [94]
[95] [96] [97] Appendix C [98] [99] Appendix D [100] Appendix E [101]
Appendix F [102] [103] )
(see the transcript file for additional information) </home/buildd/.texmf-var/f
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Loading texinfo [version 2015-06-24.23]: pdf, fonts, markup, glyphs,
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This is `epsf.tex' v2.7.4 <14 February 2011>
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[2] (./R-intro.toc [-1] [-2] [-3]) [-4] (./R-intro.toc) (./R-intro.toc)
(Preface) Chapter 1 [1] [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11]
Chapter 3 [12] [13] [14] Chapter 4 [15] [16] [17] Chapter 5 [18] [19] [20]
[21] [22] [23] [24] [25] [26] Chapter 6 [27] [28] [29] [30] Chapter 7 [31]
[32] [33] Chapter 8 [34] [35] [36] <./images/hist.pdf> <./images/ecdf.pdf>
[37] <./images/QQ.pdf> [38] <./images/ice.pdf> [39] [40] Chapter 9 [41]
[42] Chapter 10 [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] Chapter 11
[53] [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] Chapter 12
[66] [67] [68] [69] [70]
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 []@texttt > text(x, y, expression(paste(bgroup("(", atop(n, x), ")"), p^x, q^{
n-x})))[] 
[71] [72] [73] [74] [75] <./images/fig11.pdf> [76] <./images/fig12.pdf>
[77] [78] [79] [80] Chapter 13 [81]
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[]@textrm Users con-nected to the In-ter-net can use the @texttt install.packag
es()[] @textrm and
[82] Chapter 14 [83] [84]
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 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t
extrm and
[85] Appendix A [86] [87] [88] [89] Appendix B [90] [91] [92] [93] [94]
[95] [96] [97] Appendix C [98] [99] Appendix D [100] (./R-intro.vrs [101]
[102]) Appendix E [103] (./R-intro.cps [104]) Appendix F [105] [106] )
(see the transcript file for additional information) </home/buildd/.texmf-var/f
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[2] (./R-intro.toc [-1] [-2] [-3]) [-4] (./R-intro.toc) (./R-intro.toc)
(Preface) Chapter 1 [1] [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11]
Chapter 3 [12] [13] [14] Chapter 4 [15] [16] [17] Chapter 5 [18] [19] [20]
[21] [22] [23] [24] [25] [26] Chapter 6 [27] [28] [29] [30] Chapter 7 [31]
[32] [33] Chapter 8 [34] [35] [36] <./images/hist.pdf> <./images/ecdf.pdf>
[37] <./images/QQ.pdf> [38] <./images/ice.pdf> [39] [40] Chapter 9 [41]
[42] Chapter 10 [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] Chapter 11
[53] [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] Chapter 12
[66] [67] [68] [69] [70]
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[71] [72] [73] [74] [75] <./images/fig11.pdf> [76] <./images/fig12.pdf>
[77] [78] [79] [80] Chapter 13 [81]
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[85] Appendix A [86] [87] [88] [89] Appendix B [90] [91] [92] [93] [94]
[95] [96] [97] Appendix C [98] [99] Appendix D [100] (./R-intro.vrs [101]
[102]) Appendix E [103] (./R-intro.cps [104]) Appendix F [105] [106] )
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[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1
[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17]
[18] [19] [20] [21] [22] [23] Chapter 2 [24] [25]
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[26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34]
Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47]
Chapter 7 [48]
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[49] Chapter 8 [50] [51] [52] [53] [54]
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tchArgs = FALSE[] @textrm and
[55] [56] Chapter 9 [57] [58] Chapter 10 [59] Chapter 11 [60] Chapter 12
[61] [62] (Function and variable index) [63] [64] (Concept index) [65] [66] )
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[5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20]
[21] [22] [23] Chapter 2 [24] [25]
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[26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34]
Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47]
Chapter 7 [48]
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[49] Chapter 8 [50] [51] [52] [53] [54]
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LE_

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[55] [56] Chapter 9 [57] [58] Chapter 10 [59] Chapter 11 [60] Chapter 12
[61] [62] (Function and variable index) [63] [64] (./R-ints.vrs [65])
(Concept index) [66] (./R-ints.cps) [67] )
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[5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20]
[21] [22] [23] Chapter 2 [24] [25]
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[26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34]
Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47]
Chapter 7 [48]
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[49] Chapter 8 [50] [51] [52] [53] [54]
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sed for

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LE_

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tchArgs = FALSE[] @textrm and
[55] [56] Chapter 9 [57] [58] Chapter 10 [59] Chapter 11 [60] Chapter 12
[61] [62] (Function and variable index) [63] [64] (./R-ints.vrs [65])
(Concept index) [66] (./R-ints.cps) [67] )
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[3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16]
[17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] [28]
Chapter 5 [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39]
[40] [41] [42] [43] Chapter 7 [44] [45] Chapter 8 [46] [47] Chapter 9 [48]
[49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58]
(Function and Variable Index) [59] (Concept Index) [60] Appendix A [61]
[62] )
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[3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16]
[17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] [28]
Chapter 5 [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39]
[40] [41] [42] [43] Chapter 7 [44] [45] Chapter 8 [46] [47] Chapter 9 [48]
[49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58]
(Function and Variable Index) [59] (./R-lang.vrs [60]) (Concept Index) [61]
(./R-lang.cps) Appendix A [62] [63] )
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ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/sha
re/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/
fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-lang.pdf (68 pages, 379645 bytes).
Transcript written on R-lang.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdfetex)
 restricted \write18 enabled.
entering extended mode
(/«PKGBUILDDIR»/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi
(/usr/share/texmf/tex/texinfo/texinfo.tex
Loading texinfo [version 2015-06-24.23]: pdf, fonts, markup, glyphs,
page headings, tables, conditionals, indexing, sectioning, toc, environments,
defuns, macros, cross references, insertions, (./epsf.tex
This is `epsf.tex' v2.7.4 <14 February 2011>
) localization, formatting, and turning on texinfo input format.) (./R-lang.aux
) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi)
[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-lang.toc
[-1] [-2]) [-3] (./R-lang.toc) (./R-lang.toc) Chapter 1 Chapter 2 [1] [2]
Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294
 @textbf storage.mode| 
[3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16]
[17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] [28]
Chapter 5 [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39]
[40] [41] [42] [43] Chapter 7 [44] [45] Chapter 8 [46] [47] Chapter 9 [48]
[49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58]
(Function and Variable Index) [59] (./R-lang.vrs [60]) (Concept Index) [61]
(./R-lang.cps) Appendix A [62] [63] )
(see the transcript file for additional information)</usr/share/texlive/texmf-d
ist/fonts/type1/public/amsfonts/cm/cmb10.pfb></usr/share/texlive/texmf-dist/fon
ts/type1/public/amsfonts/cm/cmbx12.pfb></usr/share/texlive/texmf-dist/fonts/typ
e1/public/amsfonts/cm/cmmi10.pfb></usr/share/texlive/texmf-dist/fonts/type1/pub
lic/amsfonts/cm/cmmi12.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/am
sfonts/cm/cmmi9.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/
cm/cmr10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr7
.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb></u
sr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsl10.pfb></usr/sha
re/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsltt10.pfb></usr/share/t
exlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb></usr/share/texlive
/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb></usr/share/texlive/texmf
-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb></usr/share/texlive/texmf-dist/
fonts/type1/public/amsfonts/cm/cmtt9.pfb>
Output written on R-lang.pdf (68 pages, 379648 bytes).
Transcript written on R-lang.log.
installing R manuals in PDF format ...
make[2]: Leaving directory '/«PKGBUILDDIR»/doc/manual'
make[1]: Leaving directory '/«PKGBUILDDIR»'
make		prefix=/«PKGBUILDDIR»/debian/r-base-core/usr  \
		infodir=/«PKGBUILDDIR»/debian/r-base-core/usr/share/info	install-info
make[1]: Entering directory '/«PKGBUILDDIR»'
make[2]: Entering directory '/«PKGBUILDDIR»/doc/manual'
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-FAQ.texi
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-admin.texi
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-data.texi
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-exts.texi
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-intro.texi
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-ints.texi
/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-lang.texi
mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/info
/usr/bin/install -c -m 644 "./dir" "/«PKGBUILDDIR»/debian/r-base-core/usr/share/info"
installing R info pages ...
updating '/«PKGBUILDDIR»/debian/r-base-core/usr/share/info/dir' ...
you need to adjust /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/dir manually
you need to adjust /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/dir manually
you need to adjust /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/dir manually
you need to adjust /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/dir manually
you need to adjust /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/dir manually
you need to adjust /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/dir manually
you need to adjust /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/dir manually
make[2]: Leaving directory '/«PKGBUILDDIR»/doc/manual'
make[1]: Leaving directory '/«PKGBUILDDIR»'
dh_movefiles	--sourcedir=debian/r-base-core -pr-doc-pdf
dh_movefiles	--sourcedir=debian/r-base-core -pr-doc-html
touch install-indep-stamp
gunzip -9v /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/*.gz
/«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-FAQ.info.gz:	 67.0% -- replaced with /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-FAQ.info
/«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-admin.info.gz:	 68.3% -- replaced with /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-admin.info
/«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-data.info.gz:	 70.6% -- replaced with /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-data.info
/«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-exts.info-1.gz:	 66.9% -- replaced with /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-exts.info-1
/«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-exts.info-2.gz:	 70.8% -- replaced with /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-exts.info-2
/«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-exts.info.gz:	 68.2% -- replaced with /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-exts.info
/«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-intro.info.gz:	 70.0% -- replaced with /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-intro.info
/«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-ints.info.gz:	 67.8% -- replaced with /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-ints.info
/«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-lang.info.gz:	 71.7% -- replaced with /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-lang.info
dh_movefiles	--sourcedir=debian/r-base-core -pr-doc-info
rm -vf	/«PKGBUILDDIR»/debian/r-doc-info/usr/share/info/dir		\
	/«PKGBUILDDIR»/debian/r-doc-info/usr/share/info/dir.old	
removed '/«PKGBUILDDIR»/debian/r-doc-info/usr/share/info/dir'
dh_installdirs -pr-mathlib usr/include usr/lib \
				usr/share/lintian/overrides \
				usr/lib/pkgconfig
dh_movefiles	--sourcedir=debian/r-base-core -pr-mathlib
(cd /«PKGBUILDDIR»/debian/r-mathlib/usr/lib; \
		ls -l ; \
		mv -v  libRmath.so 	     libRmath.so.1.0.0; \
		ln -sv libRmath.so.1.0.0 libRmath.so.1; \
		ln -sv libRmath.so.1  libRmath.so)
total 1764
-rw-rw-r-- 1 root root 1139842 Jan 11 13:04 libRmath.a
-rwxrwxr-x 1 root root  658016 Jan 11 13:04 libRmath.so
drwxr-xr-x 2 root root    4096 Jan 11 13:06 pkgconfig
'libRmath.so' -> 'libRmath.so.1.0.0'
'libRmath.so.1' -> 'libRmath.so.1.0.0'
'libRmath.so' -> 'libRmath.so.1'
install -m 0644 src/include/Rmath.h			\
		/«PKGBUILDDIR»/debian/r-mathlib/usr/include
install -m 0644 debian/Rprofile.site /«PKGBUILDDIR»/debian/r-base-core/etc/R
install -m 0644 debian/Renviron.site /«PKGBUILDDIR»/debian/r-base-core/etc/R
(cd /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/etc; \
	cat /«PKGBUILDDIR»/debian/Renviron-R_LIBS.patch | patch --verbose;	\
	mv Makeconf repositories ldpaths ../../../../etc/R/;	\
	mv Renviron Renviron.ucf;				\
	ln -s  /etc/R/Makeconf	.;				\
	ln -s  /etc/R/Renviron	.;				\
	ln -s  /etc/R/Renviron.site .;				\
	ln -s  /etc/R/Rprofile.site .;				\
	ln -s  /etc/R/ldpaths   .;                              \
	ln -s  /etc/R/repositories .				)
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|--- Renviron.orig	2003-04-04 06:52:22.000000000 -0500
|+++ Renviron	2003-04-04 06:49:05.000000000 -0500
--------------------------
patching file Renviron
Using Plan A...
Hunk #1 succeeded at 43 with fuzz 2 (offset 10 lines).
done
dh_bash-completion	
(cd /«PKGBUILDDIR»/debian/r-base-core/usr/lib/; \
	ln -sv R/lib/libR.so . )
'./libR.so' -> 'R/lib/libR.so'
(cd debian/icon-class-patch && munpack rlogo_icon.png.mpack)
rlogo_icon.png (application/octet-stream)
install -m 0644 debian/icon-class-patch/rlogo_icon.png	\
	debian/r-base-core/usr/share/icons/hicolor/48x48/apps
install -m 0644 debian/icon-class-patch/R.desktop		\
	debian/r-base-core/usr/share/applications
rm debian/icon-class-patch/rlogo_icon.png
touch install-arch-stamp
*** binary-arch ***
dh_testdir -a
dh_testroot -a
dh_installdocs -pr-base-core doc/NEWS.* README \
				debian/README.Atlas \
				debian/README.mathlib
dh_installdocs -pr-mathlib  doc/NEWS.* README \
				debian/README.mathlib
dh_installdocs -pr-base-core-dbg				
dh_installexamples -pr-mathlib	src/nmath/standalone/test.c
dh_installmenu -a
# (cd /«PKGBUILDDIR»/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../../lib/R/doc .)
(cd /«PKGBUILDDIR»/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../R/doc .)
(cd /«PKGBUILDDIR»/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../../lib/R/library .)
install -p -m 0644  debian/r-base-core.lintian \
   /«PKGBUILDDIR»/debian/r-base-core/usr/share/lintian/overrides/r-base-core
install -p -m 0644  debian/r-recommended.lintian \
   /«PKGBUILDDIR»/debian/r-recommended/usr/share/lintian/overrides/r-recommended
install -p -m 0644  debian/r-mathlib.lintian \
   /«PKGBUILDDIR»/debian/r-mathlib/usr/share/lintian/overrides/r-mathlib
dh_installchangelogs -a	-k doc/NEWS 
dh_strip	--sourcedir=/«PKGBUILDDIR»/debian/r-base-core --dbg-package=r-base-core-dbg
dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding
dh_strip debug symbol extraction: all non-arch-all packages for this build platform i386: r-base-core r-mathlib r-base-core-dbg 
dh_strip debug symbol extraction: not adding gnu debuglinks since --dbg-package is given
dh_strip debug symbol extraction: packages to act on: r-base-core r-mathlib r-base-core-dbg 
dh_strip debug symbol extraction: ignored packages: 
we have -dbg package(s), not installing anything into ddeb
find: `/«PKGBUILDDIR»/debian/r-base-core-dbgsym': No such file or directory
dpkg-gencontrol: warning: -is is deprecated; it is without effect
dpkg-gencontrol: warning: -ip is deprecated; it is without effect
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
/usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol
we have -dbg package(s), not installing anything into ddeb
find: `/«PKGBUILDDIR»/debian/r-mathlib-dbgsym': No such file or directory
dpkg-gencontrol: warning: -is is deprecated; it is without effect
dpkg-gencontrol: warning: -ip is deprecated; it is without effect
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
/usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol
Unknown option: sourcedir
dh_strip 	--sourcedir=/«PKGBUILDDIR»/debian/r-mathlib
dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding
dh_strip debug symbol extraction: all non-arch-all packages for this build platform i386: r-base-core r-mathlib r-base-core-dbg 
dh_strip debug symbol extraction: packages to act on: r-base-core r-mathlib r-base-core-dbg 
dh_strip debug symbol extraction: ignored packages: 
pkg_create_dbgsym: /«PKGBUILDDIR»/debian/r-base-core-dbgsym already exists, ignoring
pkg_create_dbgsym: /«PKGBUILDDIR»/debian/r-mathlib-dbgsym already exists, ignoring
Unknown option: sourcedir
dh_compress -a
dh_fixperms -a
dh_link -a
dh_makeshlibs -a
dh_installdeb -a
dh_perl -a
dh_shlibdeps -a -l /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/lib
dpkg-shlibdeps: warning: can't extract name and version from library name 'libtk8.6.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libtcl8.6.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so'
dh_gencontrol -a
dpkg-gencontrol: warning: Depends field of package r-base-core: unknown substitution variable ${perl:Depends}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform i386: r-base-core r-mathlib r-base-core-dbg 
dh_gencontrol debug symbol wrapper: packages to act on: r-base-core r-mathlib r-base-core-dbg 
dh_gencontrol debug symbol wrapper: ignored packages: 
dh_gencontrol debug symbol wrapper: processing package r-base-core (pkgdir debian/r-base-core, ddeb package dir debian/r-base-core-dbgsym)
dh_gencontrol debug symbol wrapper: building r-base-core-dbgsym_3.2.3-2_i386.ddeb
dpkg-deb: building package 'r-base-core-dbgsym' in '../r-base-core-dbgsym_3.2.3-2_i386.ddeb'.
dh_gencontrol debug symbol wrapper: dpkg-distaddfile r-base-core-dbgsym_3.2.3-2_i386.ddeb gnu-r extra
dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_gencontrol debug symbol wrapper: processing package r-mathlib (pkgdir debian/r-mathlib, ddeb package dir debian/r-mathlib-dbgsym)
dh_gencontrol debug symbol wrapper: building r-mathlib-dbgsym_3.2.3-2_i386.ddeb
dpkg-deb: building package 'r-mathlib-dbgsym' in '../r-mathlib-dbgsym_3.2.3-2_i386.ddeb'.
dh_gencontrol debug symbol wrapper: dpkg-distaddfile r-mathlib-dbgsym_3.2.3-2_i386.ddeb gnu-r extra
dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a
dh_builddeb -a
INFO: pkgstriptranslations version 128
INFO: pkgstriptranslations version 128
INFO: pkgstriptranslations version 128
pkgstriptranslations: processing r-base-core-dbg (in debian/r-base-core-dbg); do_strip: , oemstrip: 
pkgstriptranslations: processing r-mathlib (in debian/r-mathlib); do_strip: , oemstrip: 
pkgstriptranslations: processing r-base-core (in debian/r-base-core); do_strip: , oemstrip: 
pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>"
pkgstripfiles: processing control file: debian/r-mathlib/DEBIAN/control, package r-mathlib, directory debian/r-mathlib
.. removing usr/share/doc/r-mathlib/changelog.gz
INFO: pkgstripfiles: waiting for lock (r-mathlib) ...
INFO: pkgstripfiles: waiting for lock (r-mathlib) ...
INFO: pkgstripfiles: waiting for lock (r-mathlib) ...
INFO: pkgstripfiles: waiting for lock (r-mathlib) ...
INFO: pkgstripfiles: waiting for lock (r-mathlib) ...
pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>"
pkgstripfiles: processing control file: debian/r-base-core-dbg/DEBIAN/control, package r-base-core-dbg, directory debian/r-base-core-dbg
.. removing usr/share/doc/r-base-core-dbg/changelog.gz
INFO: pkgstripfiles: waiting for lock (r-mathlib) ...
INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ...
INFO: pkgstripfiles: waiting for lock (r-mathlib) ...
INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ...
INFO: pkgstripfiles: waiting for lock (r-mathlib) ...
INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ...
INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ...
INFO: pkgstripfiles: waiting for lock (r-mathlib) ...
INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ...
INFO: pkgstripfiles: waiting for lock (r-mathlib) ...
INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ...
INFO: pkgstripfiles: waiting for lock (r-mathlib) ...
INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ...
INFO: pkgstripfiles: waiting for lock (r-mathlib) ...
INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ...
INFO: pkgstripfiles: waiting for lock (r-mathlib) ...
INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ...
INFO: pkgstripfiles: waiting for lock (r-mathlib) ...
debian/r-base-core/usr/share/applications/R.desktop: does not have gettext domain, not stripping
INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ...
INFO: pkgstripfiles: waiting for lock (r-mathlib) ...
pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>"
pkgstripfiles: processing control file: debian/r-base-core/DEBIAN/control, package r-base-core, directory debian/r-base-core
.. removing usr/share/doc/r-base-core/changelog.gz
pkgstripfiles: Truncating usr/share/doc/r-base-core/changelog.Debian.gz to topmost ten records
pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-base-core ...
oINFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ...
pkgstripfiles: Truncating usr/share/doc/r-mathlib/changelog.Debian.gz to topmost ten records
pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-mathlib ...
pkgstripfiles: No PNG files.
dpkg-deb: building package 'r-mathlib' in '../r-mathlib_3.2.3-2_i386.deb'.
Searching for duplicated docs in dependency r-base-core...
  symlinking changelog.Debian.gz in r-base-core-dbg to file in r-base-core
pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-base-core-dbg ...
pkgstripfiles: No PNG files.
dpkg-deb: building package 'r-base-core-dbg' in '../r-base-core-dbg_3.2.3-2_i386.deb'.
WARNING: optipng failed on usr/lib/R/library/graphics/help/figures/pch.png, ignoring
Invalid PNG signature on usr/lib/R/library/graphics/help/figures/pch.png [at void throw_png_error():pngex.h:37]
WARNING: advpng failed on usr/lib/R/library/graphics/help/figures/pch.png, ignoring
WARNING: optipng failed on usr/lib/R/library/graphics/help/figures/mai.png, ignoring
Invalid PNG signature on usr/lib/R/library/graphics/help/figures/mai.png [at void throw_png_error():pngex.h:37]
WARNING: advpng failed on usr/lib/R/library/graphics/help/figures/mai.png, ignoring
WARNING: optipng failed on usr/lib/R/library/graphics/help/figures/oma.png, ignoring
Invalid PNG signature on usr/lib/R/library/graphics/help/figures/oma.png [at void throw_png_error():pngex.h:37]
WARNING: advpng failed on usr/lib/R/library/graphics/help/figures/oma.png, ignoring
ooo...ooo
pkgstripfiles: PNG optimization (7/0) for package r-base-core took 11 s
dpkg-deb: building package 'r-base-core' in '../r-base-core_3.2.3-2_i386.deb'.
 dpkg-genchanges -B -mLaunchpad Build Daemon <buildd@lgw01-42.buildd> >../r-base_3.2.3-2_i386.changes
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build r-base-3.2.3
dpkg-buildpackage: binary-only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20160111-1308

Finished
────────

I: Built successfully

┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build Chroot                                                            │
└──────────────────────────────────────────────────────────────────────────────┘


┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘


r-base_3.2.3-2_i386.changes:
────────────────────────────

Format: 1.8
Date: Sun, 10 Jan 2016 21:22:03 -0600
Source: r-base
Binary: r-base r-base-core r-base-dev r-mathlib r-base-html r-doc-pdf r-doc-html r-doc-info r-recommended r-base-core-dbg
Architecture: i386
Version: 3.2.3-2
Distribution: xenial-proposed
Urgency: low
Maintainer: Launchpad Build Daemon <buildd@lgw01-42.buildd>
Changed-By: Dirk Eddelbuettel <edd@debian.org>
Description:
 r-base     - GNU R statistical computation and graphics system
 r-base-core - GNU R core of statistical computation and graphics system
 r-base-core-dbg - GNU R debug symbols for statistical comp. language and environmen
 r-base-dev - GNU R installation of auxiliary GNU R packages
 r-base-html - GNU R html docs for statistical computing system functions
 r-doc-html - GNU R html manuals for statistical computing system
 r-doc-info - GNU R info manuals statistical computing system
 r-doc-pdf  - GNU R pdf manuals for statistical computing system
 r-mathlib  - GNU R standalone mathematics library
 r-recommended - GNU R collection of recommended packages [metapackage]
Closes: 810357
Changes:
 r-base (3.2.3-2) unstable; urgency=low
 .
   [ Sébastien Villemot ]
   * Use gcc-4.9 to compile C code on mips, as a workaround to a gcc-5 bug.
     (Closes: #810357).
   * Enable back optimization flags on mips and mipsel.
 .
   [ Dirk Eddelbuettel ]
   * debian/control: Use Sebastien's patch and add gcc-4.9 for mips
   * debian/rules: Use Sebastien's patch and enforce gcc-4.9 for mips, also
     comment-out remaining suppression of optmization
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents                                                             │
└──────────────────────────────────────────────────────────────────────────────┘


r-base-core-dbg_3.2.3-2_i386.deb
────────────────────────────────

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    1842 bytes,    39 lines      control              
    1700 bytes,    21 lines      md5sums              
 Package: r-base-core-dbg
 Source: r-base
 Version: 3.2.3-2
 Architecture: i386
 Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
 Original-Maintainer: Dirk Eddelbuettel <edd@debian.org>
 Installed-Size: 8642
 Depends: r-base-core (= 3.2.3-2), r-base-dev (= 3.2.3-2)
 Section: debug
 Priority: extra
 Homepage: http://www.r-project.org/
 Description: GNU R debug symbols for statistical comp. language and environment
  R is a system for statistical computation and graphics.  It consists
  of a language plus a run-time environment with graphics, a debugger,
  access to certain system functions, and the ability to run programs
  stored in script files.
  .
  The design of R has been heavily influenced by two existing languages:
  Becker, Chambers & Wilks' S and Sussman's Scheme.  Whereas the
  resulting language is very similar in appearance to S, the underlying
  implementation and semantics are derived from Scheme.
  .
  The core of R is an interpreted computer language which allows
  branching and looping as well as modular programming using functions.
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  large number of statistical procedures and underlying applied math
  computations.  There is also a large set of functions which provide
  a flexible graphical environment for creating various kinds of data
  presentations.
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  named 'r-cran-<name>'.
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r-base-core_3.2.3-2_i386.deb
────────────────────────────

 new debian package, version 2.0.
 size 20388484 bytes: control archive=26560 bytes.
      93 bytes,     5 lines      conffiles            
    2755 bytes,    45 lines      control              
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      30 bytes,     1 lines      shlibs               
 Package: r-base-core
 Source: r-base
 Version: 3.2.3-2
 Architecture: i386
 Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
 Original-Maintainer: Dirk Eddelbuettel <edd@debian.org>
 Installed-Size: 32907
 Depends: zip, unzip, libpaper-utils, xdg-utils, libblas3 | libblas.so.3, libbz2-1.0, libc6 (>= 2.16), libcairo2 (>= 1.6.0), libcurl3 (>= 7.28.0), libglib2.0-0 (>= 2.12.0), libgomp1 (>= 4.9), libjpeg8 (>= 8c), liblapack3 | liblapack.so.3, liblzma5 (>= 5.1.1alpha+20120614), libpango-1.0-0 (>= 1.14.0), libpangocairo-1.0-0 (>= 1.14.0), libpcre3, libpng12-0 (>= 1.2.13-4), libreadline6 (>= 6.0), libtcl8.6 (>= 8.6.0), libtiff5 (>= 4.0.3), libtk8.6 (>= 8.6.0), libx11-6, libxt6, zlib1g (>= 1:1.1.4), ucf (>= 3.0), ca-certificates
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  .
  The design of R has been heavily influenced by two existing languages:
  Becker, Chambers & Wilks' S and Sussman's Scheme.  Whereas the
  resulting language is very similar in appearance to S, the underlying
  implementation and semantics are derived from Scheme.
  .
  The core of R is an interpreted computer language which allows
  branching and looping as well as modular programming using functions.
  Most of the user-visible functions in R are written in R.  It is
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  presentations.
  .
  Additionally, several thousand extension "packages" are available
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  .
  This package provides the core GNU R system from which only the optional
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r-mathlib_3.2.3-2_i386.deb
──────────────────────────

 new debian package, version 2.0.
 size 1343046 bytes: control archive=2041 bytes.
    1837 bytes,    40 lines      control              
    1148 bytes,    17 lines      md5sums              
     370 bytes,    27 lines   *  postinst             
      30 bytes,     1 lines      shlibs               
      60 bytes,     2 lines      triggers             
 Package: r-mathlib
 Source: r-base
 Version: 3.2.3-2
 Architecture: i386
 Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
 Original-Maintainer: Dirk Eddelbuettel <edd@debian.org>
 Installed-Size: 1876
 Depends: libc6 (>= 2.4)
 Recommends: r-base-core (= 3.2.3-2), r-base-dev (= 3.2.3-2)
 Section: gnu-r
 Priority: optional
 Homepage: http://www.r-project.org/
 Description: GNU R standalone mathematics library
  R is a system for statistical computation and graphics.  It consists
  of a language plus a run-time environment with graphics, a debugger,
  access to certain system functions, and the ability to run programs
  stored in script files.
  .
  The design of R has been heavily influenced by two existing languages:
  Becker, Chambers & Wilks' S and Sussman's Scheme.  Whereas the
  resulting language is very similar in appearance to S, the underlying
  implementation and semantics are derived from Scheme.
  .
  The core of R is an interpreted computer language which allows
  branching and looping as well as modular programming using functions.
  Most of the user-visible functions in R are written in R.  It is
  possible for the user to interface to procedures written in the
  C, C++, or FORTRAN languages for efficiency, and many of R's core
  functions do so.  The R distribution contains functionality for a
  large number of statistical procedures and underlying applied math
  computations.  There is also a large set of functions which provide
  a flexible graphical environment for creating various kinds of data
  presentations.
  .
  Additionally, several thousand extension "packages" are available from
  CRAN, the Comprehensive R Archive Network, many also as Debian packages,
  named 'r-cran-<name>'.
  .
  This package provides the libRmath shared and static libraries which can
  be called from standalone C or C++ code.

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drwxr-xr-x root/root         0 2016-01-11 13:07 ./usr/share/doc/r-mathlib/
-rw-r--r-- root/root     35933 2014-03-12 23:03 ./usr/share/doc/r-mathlib/NEWS.0.gz
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-rw-r--r-- root/root    259291 2016-01-11 12:54 ./usr/share/doc/r-mathlib/NEWS.rds.gz
-rw-r--r-- root/root      2107 2014-07-07 22:15 ./usr/share/doc/r-mathlib/README.gz
-rw-r--r-- root/root      3026 2016-01-11 12:46 ./usr/share/doc/r-mathlib/README.mathlib
-rw-r--r-- root/root      1061 2016-01-11 13:07 ./usr/share/doc/r-mathlib/changelog.Debian.gz
-rw-r--r-- root/root     20761 2016-01-11 12:46 ./usr/share/doc/r-mathlib/copyright
drwxr-xr-x root/root         0 2016-01-11 13:06 ./usr/share/doc/r-mathlib/examples/
-rw-r--r-- root/root      1371 2015-08-25 22:18 ./usr/share/doc/r-mathlib/examples/test.c
drwxr-xr-x root/root         0 2016-01-11 13:04 ./usr/share/lintian/
drwxr-xr-x root/root         0 2016-01-11 13:06 ./usr/share/lintian/overrides/
-rw-r--r-- root/root       231 2016-01-11 12:46 ./usr/share/lintian/overrides/r-mathlib


┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build                                                                   │
└──────────────────────────────────────────────────────────────────────────────┘


┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘

Not removing build depends: as requested
Keeping session: 

┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘

Build Architecture: i386
Build-Space: 349544
Build-Time: 1275
Distribution: xenial-proposed
Host Architecture: i386
Install-Time: 270
Job: r-base_3.2.3-2.dsc
Machine Architecture: amd64
Package: r-base
Package-Time: 1548
Source-Version: 3.2.3-2
Space: 349544
Status: successful
Version: 3.2.3-2
────────────────────────────────────────────────────────────────────────────────
Finished at 20160111-1308
Build needed 00:25:48, 349544k disc space
RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-8831329']
Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-8831329/chroot-autobuild...
RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-8831329']
Unmounting chroot for build PACKAGEBUILD-8831329...
RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-8831329']
Removing build PACKAGEBUILD-8831329