RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux kishi17 3.2.0-95-highbank #135-Ubuntu SMP PREEMPT Tue Nov 10 14:26:08 UTC 2015 armv7l Buildd toolchain package versions: launchpad-buildd_134 python-lpbuildd_134 sbuild_0.65.2-1ubuntu2~ubuntu12.04.1~ppa7 bzr_2.5.1-0ubuntu2 dpkg-dev_1.16.1.2ubuntu7.7 python-debian_0.1.27ubuntu1~ubuntu12.04.1~ppa2. Syncing the system clock with the buildd NTP service... 13 Jan 06:47:44 ntpdate[4139]: adjust time server 10.211.37.1 offset -0.001571 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-8841486', '/home/buildd/filecache-default/bdf524d1fbccc9606fe3cb203c365489d3f7f335'] Unpacking chroot for build PACKAGEBUILD-8841486 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-8841486'] Mounting chroot for build PACKAGEBUILD-8841486 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-8841486', 'deb http://ftpmaster.internal/ubuntu xenial main universe', 'deb http://ftpmaster.internal/ubuntu xenial-security main universe', 'deb http://ftpmaster.internal/ubuntu xenial-updates main universe', 'deb http://ftpmaster.internal/ubuntu xenial-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-8841486 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-8841486', 'armhf'] Updating debian chroot for build PACKAGEBUILD-8841486 Get:1 http://ftpmaster.internal xenial InRelease [227 kB] Get:2 http://ftpmaster.internal xenial-security InRelease [73.5 kB] Get:3 http://ftpmaster.internal xenial-updates InRelease [73.5 kB] Get:4 http://ftpmaster.internal xenial-proposed InRelease [227 kB] Get:5 http://ftpmaster.internal xenial/main armhf Packages [1448 kB] Get:6 http://ftpmaster.internal xenial/universe armhf Packages [6991 kB] Get:7 http://ftpmaster.internal xenial/main Translation-en [852 kB] Get:8 http://ftpmaster.internal xenial/universe Translation-en [4794 kB] Get:9 http://ftpmaster.internal xenial-security/main armhf Packages [28 B] Get:10 http://ftpmaster.internal xenial-security/universe armhf Packages [28 B] Get:11 http://ftpmaster.internal xenial-security/main Translation-en [28 B] Get:12 http://ftpmaster.internal xenial-security/universe Translation-en [28 B] Get:13 http://ftpmaster.internal xenial-updates/main armhf Packages [28 B] Get:14 http://ftpmaster.internal xenial-updates/universe armhf Packages [28 B] Get:15 http://ftpmaster.internal xenial-updates/main Translation-en [28 B] Get:16 http://ftpmaster.internal xenial-updates/universe Translation-en [28 B] Get:17 http://ftpmaster.internal xenial-proposed/main armhf Packages [78.5 kB] Get:18 http://ftpmaster.internal xenial-proposed/universe armhf Packages [339 kB] Get:19 http://ftpmaster.internal xenial-proposed/main Translation-en [44.3 kB] Get:20 http://ftpmaster.internal xenial-proposed/universe Translation-en [191 kB] Fetched 15.3 MB in 19s (803 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libapt-pkg4.16 libisl13 libprocps3 udev Use 'apt-get autoremove' to remove them. The following packages will be REMOVED: perl-modules* The following NEW packages will be installed: libapt-pkg5.0 libisl15 libperl5.22 libprocps4 perl-modules-5.22 The following packages will be upgraded: advancecomp apt apt-transport-https base-files base-passwd binutils bsdutils cpp cpp-5 debconf diffutils dmsetup dpkg dpkg-dev e2fslibs e2fsprogs findutils g++ g++-5 gcc gcc-5 gcc-5-base gnupg gpgv grep hostname init initscripts libapparmor1 libasan2 libatomic1 libaudit-common libaudit1 libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap2 libcap2-bin libcc1-0 libcomerr2 libcurl3-gnutls libdbus-1-3 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfdisk1 libffi6 libgcc-5-dev libgcc1 libgcrypt20 libgmp10 libgnutls-deb0-28 libgomp1 libgpg-error0 libgssapi-krb5-2 libidn11 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2 libmount1 libmpfr4 libncurses5 libncursesw5 libnih-dbus1 libnih1 libp11-kit0 libpng12-0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-5-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libubsan0 libudev1 libusb-0.1-4 libuuid1 linux-libc-dev lsb-base mount multiarch-support ncurses-base ncurses-bin openssl perl perl-base pkg-create-dbgsym pkgbinarymangler procps systemd systemd-sysv sysv-rc sysvinit-utils tar udev util-linux 108 upgraded, 5 newly installed, 1 to remove and 0 not upgraded. Need to get 111 MB of archives. After this operation, 255 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ xenial/main base-files armhf 9.4ubuntu3 [69.6 kB] Get:2 http://ftpmaster.internal/ubuntu/ xenial/main bsdutils armhf 1:2.27.1-1ubuntu3 [48.9 kB] Get:3 http://ftpmaster.internal/ubuntu/ xenial/main diffutils armhf 1:3.3-3 [143 kB] Get:4 http://ftpmaster.internal/ubuntu/ xenial-proposed/main dpkg armhf 1.18.4ubuntu1 [1989 kB] Get:5 http://ftpmaster.internal/ubuntu/ xenial/main libc6-dev armhf 2.21-0ubuntu5 [1585 kB] Get:6 http://ftpmaster.internal/ubuntu/ xenial/main libc-dev-bin armhf 2.21-0ubuntu5 [58.6 kB] Get:7 http://ftpmaster.internal/ubuntu/ xenial-proposed/main linux-libc-dev armhf 4.3.0-6.17 [798 kB] Get:8 http://ftpmaster.internal/ubuntu/ xenial/main libcap2 armhf 1:2.24-12 [11.7 kB] Get:9 http://ftpmaster.internal/ubuntu/ xenial/main libc-bin armhf 2.21-0ubuntu5 [984 kB] Get:10 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libgomp1 armhf 5.3.1-5ubuntu3 [49.9 kB] Get:11 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libatomic1 armhf 5.3.1-5ubuntu3 [6034 B] Get:12 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libasan2 armhf 5.3.1-5ubuntu3 [243 kB] Get:13 http://ftpmaster.internal/ubuntu/ xenial-proposed/main gcc-5-base armhf 5.3.1-5ubuntu3 [16.7 kB] Get:14 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libgcc1 armhf 1:5.3.1-5ubuntu3 [39.0 kB] Get:15 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libubsan0 armhf 5.3.1-5ubuntu3 [88.6 kB] Get:16 http://ftpmaster.internal/ubuntu/ xenial/main libisl15 armhf 0.15-3 [399 kB] Get:17 http://ftpmaster.internal/ubuntu/ xenial-proposed/main cpp-5 armhf 5.3.1-5ubuntu3 [23.7 MB] Get:18 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libcc1-0 armhf 5.3.1-5ubuntu3 [25.8 kB] Get:19 http://ftpmaster.internal/ubuntu/ xenial/main binutils armhf 2.25.90.20160101-1ubuntu2 [2335 kB] Get:20 http://ftpmaster.internal/ubuntu/ xenial-proposed/main g++-5 armhf 5.3.1-5ubuntu3 [25.3 MB] Get:21 http://ftpmaster.internal/ubuntu/ xenial-proposed/main gcc-5 armhf 5.3.1-5ubuntu3 [23.9 MB] Get:22 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libgcc-5-dev armhf 5.3.1-5ubuntu3 [475 kB] Get:23 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libstdc++-5-dev armhf 5.3.1-5ubuntu3 [1464 kB] Get:24 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libstdc++6 armhf 5.3.1-5ubuntu3 [350 kB] Get:25 http://ftpmaster.internal/ubuntu/ xenial/main libgmp10 armhf 2:6.1.0+dfsg-2 [184 kB] Get:26 http://ftpmaster.internal/ubuntu/ xenial/main libmpfr4 armhf 3.1.3-2 [169 kB] Get:27 http://ftpmaster.internal/ubuntu/ xenial/main libc6 armhf 2.21-0ubuntu5 [3903 kB] Get:28 http://ftpmaster.internal/ubuntu/ xenial/main e2fslibs armhf 1.42.13-1ubuntu1 [177 kB] Get:29 http://ftpmaster.internal/ubuntu/ xenial/main e2fsprogs armhf 1.42.13-1ubuntu1 [754 kB] Get:30 http://ftpmaster.internal/ubuntu/ xenial/main findutils armhf 4.4.2-10 [229 kB] Get:31 http://ftpmaster.internal/ubuntu/ xenial-proposed/main grep armhf 2.22-1 [139 kB] Get:32 http://ftpmaster.internal/ubuntu/ xenial/main hostname armhf 3.16ubuntu2 [10.9 kB] Get:33 http://ftpmaster.internal/ubuntu/ xenial/main init armhf 1.24ubuntu2 [3980 B] Get:34 http://ftpmaster.internal/ubuntu/ xenial/main libsmartcols1 armhf 2.27.1-1ubuntu3 [54.6 kB] Get:35 http://ftpmaster.internal/ubuntu/ xenial/main libuuid1 armhf 2.27.1-1ubuntu3 [14.1 kB] Get:36 http://ftpmaster.internal/ubuntu/ xenial/main libblkid1 armhf 2.27.1-1ubuntu3 [95.3 kB] Get:37 http://ftpmaster.internal/ubuntu/ xenial/main libfdisk1 armhf 2.27.1-1ubuntu3 [127 kB] Get:38 http://ftpmaster.internal/ubuntu/ xenial/main debconf all 1.5.58ubuntu1 [136 kB] Get:39 http://ftpmaster.internal/ubuntu/ xenial/main sysvinit-utils armhf 2.88dsf-59.2ubuntu3 [24.5 kB] Get:40 http://ftpmaster.internal/ubuntu/ xenial/main sysv-rc all 2.88dsf-59.2ubuntu3 [36.1 kB] Get:41 http://ftpmaster.internal/ubuntu/ xenial/main initscripts armhf 2.88dsf-59.2ubuntu3 [24.9 kB] Get:42 http://ftpmaster.internal/ubuntu/ xenial/main util-linux armhf 2.27.1-1ubuntu3 [795 kB] Get:43 http://ftpmaster.internal/ubuntu/ xenial/main libudev1 armhf 228-3ubuntu1 [50.4 kB] Get:44 http://ftpmaster.internal/ubuntu/ xenial/main udev armhf 228-3ubuntu1 [948 kB] Get:45 http://ftpmaster.internal/ubuntu/ xenial/main libsystemd0 armhf 228-3ubuntu1 [180 kB] Get:46 http://ftpmaster.internal/ubuntu/ xenial/main systemd armhf 228-3ubuntu1 [3088 kB] Get:47 http://ftpmaster.internal/ubuntu/ xenial/main libselinux1 armhf 2.4-3 [48.2 kB] Get:48 http://ftpmaster.internal/ubuntu/ xenial/main libtinfo5 armhf 6.0+20151024-2ubuntu1 [66.0 kB] Get:49 http://ftpmaster.internal/ubuntu/ xenial/main libncurses5 armhf 6.0+20151024-2ubuntu1 [75.1 kB] Get:50 http://ftpmaster.internal/ubuntu/ xenial/main libncursesw5 armhf 6.0+20151024-2ubuntu1 [95.6 kB] Get:51 http://ftpmaster.internal/ubuntu/ xenial/main libprocps4 armhf 2:3.3.10-4ubuntu1 [29.8 kB] Get:52 http://ftpmaster.internal/ubuntu/ xenial/main procps armhf 2:3.3.10-4ubuntu1 [209 kB] Get:53 http://ftpmaster.internal/ubuntu/ xenial/main libapparmor1 armhf 2.10-0ubuntu10 [25.0 kB] Get:54 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libaudit-common all 1:2.4.5-1ubuntu1 [3880 B] Get:55 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libaudit1 armhf 1:2.4.5-1ubuntu1 [33.3 kB] Get:56 http://ftpmaster.internal/ubuntu/ xenial/main libmount1 armhf 2.27.1-1ubuntu3 [102 kB] Get:57 http://ftpmaster.internal/ubuntu/ xenial/main libseccomp2 armhf 2.2.3-2ubuntu3 [28.5 kB] Get:58 http://ftpmaster.internal/ubuntu/ xenial/main libcap2-bin armhf 1:2.24-12 [20.1 kB] Get:59 http://ftpmaster.internal/ubuntu/ xenial/main lsb-base all 9.20160110 [13.5 kB] Get:60 http://ftpmaster.internal/ubuntu/ xenial/main mount armhf 2.27.1-1ubuntu3 [116 kB] Get:61 http://ftpmaster.internal/ubuntu/ xenial/main ncurses-bin armhf 6.0+20151024-2ubuntu1 [131 kB] Get:62 http://ftpmaster.internal/ubuntu/ xenial/main perl-modules-5.22 all 5.22.1-4 [2648 kB] Get:63 http://ftpmaster.internal/ubuntu/ xenial/main libperl5.22 armhf 5.22.1-4 [2681 kB] Get:64 http://ftpmaster.internal/ubuntu/ xenial/main perl armhf 5.22.1-4 [238 kB] Get:65 http://ftpmaster.internal/ubuntu/ xenial/main perl-base armhf 5.22.1-4 [1178 kB] Get:66 http://ftpmaster.internal/ubuntu/ xenial/main tar armhf 1.28-2.1 [181 kB] Get:67 http://ftpmaster.internal/ubuntu/ xenial/main libapt-pkg5.0 armhf 1.1.10 [624 kB] Get:68 http://ftpmaster.internal/ubuntu/ xenial/main apt armhf 1.1.10 [938 kB] Get:69 http://ftpmaster.internal/ubuntu/ xenial/main gpgv armhf 1.4.19-6ubuntu1 [135 kB] Get:70 http://ftpmaster.internal/ubuntu/ xenial/main libusb-0.1-4 armhf 2:0.1.12-28 [15.5 kB] Get:71 http://ftpmaster.internal/ubuntu/ xenial/main gnupg armhf 1.4.19-6ubuntu1 [564 kB] Get:72 http://ftpmaster.internal/ubuntu/ xenial/main libdebconfclient0 armhf 0.198ubuntu1 [5956 B] Get:73 http://ftpmaster.internal/ubuntu/ xenial/main base-passwd armhf 3.5.39 [50.5 kB] Get:74 http://ftpmaster.internal/ubuntu/ xenial/main ncurses-base all 6.0+20151024-2ubuntu1 [17.1 kB] Get:75 http://ftpmaster.internal/ubuntu/ xenial/main systemd-sysv armhf 228-3ubuntu1 [15.5 kB] Get:76 http://ftpmaster.internal/ubuntu/ xenial/main libdbus-1-3 armhf 1.10.6-1ubuntu1 [141 kB] Get:77 http://ftpmaster.internal/ubuntu/ xenial/main libnih-dbus1 armhf 1.0.3-4.3ubuntu1 [13.4 kB] Get:78 http://ftpmaster.internal/ubuntu/ xenial/main libnih1 armhf 1.0.3-4.3ubuntu1 [45.4 kB] Get:79 http://ftpmaster.internal/ubuntu/ xenial/main libffi6 armhf 3.2.1-4 [16.2 kB] Get:80 http://ftpmaster.internal/ubuntu/ xenial/main libp11-kit0 armhf 0.23.2-3 [91.2 kB] Get:81 http://ftpmaster.internal/ubuntu/ xenial/main libtasn1-6 armhf 4.7-3 [37.4 kB] Get:82 http://ftpmaster.internal/ubuntu/ xenial/main libgnutls-deb0-28 armhf 3.3.18-1ubuntu1 [459 kB] Get:83 http://ftpmaster.internal/ubuntu/ xenial/main libldap-2.4-2 armhf 2.4.41+dfsg-1ubuntu3 [138 kB] Get:84 http://ftpmaster.internal/ubuntu/ xenial/main libcomerr2 armhf 1.42.13-1ubuntu1 [64.9 kB] Get:85 http://ftpmaster.internal/ubuntu/ xenial/main libdevmapper1.02.1 armhf 2:1.02.110-1ubuntu2 [140 kB] Get:86 http://ftpmaster.internal/ubuntu/ xenial/main libgpg-error0 armhf 1.21-1 [30.0 kB] Get:87 http://ftpmaster.internal/ubuntu/ xenial/main libgcrypt20 armhf 1.6.4-4 [301 kB] Get:88 http://ftpmaster.internal/ubuntu/ xenial/main libsepol1 armhf 2.4-2 [163 kB] Get:89 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libsemanage-common all 2.4-3 [6744 B] Get:90 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libsemanage1 armhf 2.4-3 [69.0 kB] Get:91 http://ftpmaster.internal/ubuntu/ xenial/main libss2 armhf 1.42.13-1ubuntu1 [68.4 kB] Get:92 http://ftpmaster.internal/ubuntu/ xenial/main multiarch-support armhf 2.21-0ubuntu5 [7184 B] Get:93 http://ftpmaster.internal/ubuntu/ xenial/main libpng12-0 armhf 1.2.54-1ubuntu1 [106 kB] Get:94 http://ftpmaster.internal/ubuntu/ xenial/main libsqlite3-0 armhf 3.10.0-1 [336 kB] Get:95 http://ftpmaster.internal/ubuntu/ xenial/main libssl1.0.0 armhf 1.0.2e-1ubuntu1 [711 kB] Get:96 http://ftpmaster.internal/ubuntu/ xenial/main dmsetup armhf 2:1.02.110-1ubuntu2 [61.1 kB] Get:97 http://ftpmaster.internal/ubuntu/ xenial/main libgssapi-krb5-2 armhf 1.13.2+dfsg-4 [98.6 kB] Get:98 http://ftpmaster.internal/ubuntu/ xenial/main libkrb5-3 armhf 1.13.2+dfsg-4 [230 kB] Get:99 http://ftpmaster.internal/ubuntu/ xenial/main libkrb5support0 armhf 1.13.2+dfsg-4 [26.7 kB] Get:100 http://ftpmaster.internal/ubuntu/ xenial/main libk5crypto3 armhf 1.13.2+dfsg-4 [77.9 kB] Get:101 http://ftpmaster.internal/ubuntu/ xenial/main libkeyutils1 armhf 1.5.9-8ubuntu1 [9192 B] Get:102 http://ftpmaster.internal/ubuntu/ xenial/main libidn11 armhf 1.32-3ubuntu1 [42.2 kB] Get:103 http://ftpmaster.internal/ubuntu/ xenial/main libcurl3-gnutls armhf 7.45.0-1ubuntu1 [158 kB] Get:104 http://ftpmaster.internal/ubuntu/ xenial/main apt-transport-https armhf 1.1.10 [22.6 kB] Get:105 http://ftpmaster.internal/ubuntu/ xenial/main openssl armhf 1.0.2e-1ubuntu1 [486 kB] Get:106 http://ftpmaster.internal/ubuntu/ xenial/main advancecomp armhf 1.20-1 [134 kB] Get:107 http://ftpmaster.internal/ubuntu/ xenial/main cpp armhf 4:5.2.1-16ubuntu2 [27.6 kB] Get:108 http://ftpmaster.internal/ubuntu/ xenial-proposed/main dpkg-dev all 1.18.4ubuntu1 [584 kB] Get:109 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libdpkg-perl all 1.18.4ubuntu1 [195 kB] Get:110 http://ftpmaster.internal/ubuntu/ xenial/main gcc armhf 4:5.2.1-16ubuntu2 [5242 B] Get:111 http://ftpmaster.internal/ubuntu/ xenial/main g++ armhf 4:5.2.1-16ubuntu2 [1502 B] Get:112 http://ftpmaster.internal/ubuntu/ xenial/main pkg-create-dbgsym all 0.70 [9046 B] Get:113 http://ftpmaster.internal/ubuntu/ xenial/main pkgbinarymangler all 128 [42.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 111 MB in 16s (6688 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11455 files and directories currently installed.) Preparing to unpack .../base-files_9.4ubuntu3_armhf.deb ... Unpacking base-files (9.4ubuntu3) over (7.2ubuntu11) ... Setting up base-files (9.4ubuntu3) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... 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Unpacking libgcc1:armhf (1:5.3.1-5ubuntu3) over (1:5.2.1-22ubuntu2) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libgcc1:armhf (1:5.3.1-5ubuntu3) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11462 files and directories currently installed.) Preparing to unpack .../libubsan0_5.3.1-5ubuntu3_armhf.deb ... Unpacking libubsan0:armhf (5.3.1-5ubuntu3) over (5.2.1-22ubuntu2) ... Selecting previously unselected package libisl15:armhf. Preparing to unpack .../libisl15_0.15-3_armhf.deb ... Unpacking libisl15:armhf (0.15-3) ... Preparing to unpack .../cpp-5_5.3.1-5ubuntu3_armhf.deb ... Unpacking cpp-5 (5.3.1-5ubuntu3) over (5.2.1-22ubuntu2) ... Preparing to unpack .../libcc1-0_5.3.1-5ubuntu3_armhf.deb ... Unpacking libcc1-0:armhf (5.3.1-5ubuntu3) over (5.2.1-22ubuntu2) ... Preparing to unpack .../binutils_2.25.90.20160101-1ubuntu2_armhf.deb ... Unpacking binutils (2.25.90.20160101-1ubuntu2) over (2.25.1-6ubuntu1) ... Preparing to unpack .../g++-5_5.3.1-5ubuntu3_armhf.deb ... Unpacking g++-5 (5.3.1-5ubuntu3) over (5.2.1-22ubuntu2) ... Preparing to unpack .../gcc-5_5.3.1-5ubuntu3_armhf.deb ... Unpacking gcc-5 (5.3.1-5ubuntu3) over (5.2.1-22ubuntu2) ... Preparing to unpack .../libgcc-5-dev_5.3.1-5ubuntu3_armhf.deb ... Unpacking libgcc-5-dev:armhf (5.3.1-5ubuntu3) over (5.2.1-22ubuntu2) ... Preparing to unpack .../libstdc++-5-dev_5.3.1-5ubuntu3_armhf.deb ... Unpacking libstdc++-5-dev:armhf (5.3.1-5ubuntu3) over (5.2.1-22ubuntu2) ... Preparing to unpack .../libstdc++6_5.3.1-5ubuntu3_armhf.deb ... Unpacking libstdc++6:armhf (5.3.1-5ubuntu3) over (5.2.1-22ubuntu2) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libstdc++6:armhf (5.3.1-5ubuntu3) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11436 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.1.0+dfsg-2_armhf.deb ... Unpacking libgmp10:armhf (2:6.1.0+dfsg-2) over (2:6.0.0+dfsg-7) ... Preparing to unpack .../libmpfr4_3.1.3-2_armhf.deb ... Unpacking libmpfr4:armhf (3.1.3-2) over (3.1.3-1) ... Preparing to unpack .../libc6_2.21-0ubuntu5_armhf.deb ... Unpacking libc6:armhf (2.21-0ubuntu5) over (2.21-0ubuntu4) ... Setting up libc6:armhf (2.21-0ubuntu5) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11436 files and directories currently installed.) Preparing to unpack .../e2fslibs_1.42.13-1ubuntu1_armhf.deb ... Unpacking e2fslibs:armhf (1.42.13-1ubuntu1) over (1.42.12-1ubuntu2) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up e2fslibs:armhf (1.42.13-1ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11437 files and directories currently installed.) Preparing to unpack .../findutils_4.4.2-10_armhf.deb ... Unpacking findutils (4.4.2-10) over (4.4.2-9build1) ... Setting up findutils (4.4.2-10) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11437 files and directories currently installed.) Preparing to unpack .../hostname_3.16ubuntu2_armhf.deb ... Unpacking hostname (3.16ubuntu2) over (3.15ubuntu2) ... Setting up hostname (3.16ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11437 files and directories currently installed.) Preparing to unpack .../init_1.24ubuntu2_armhf.deb ... Unpacking init (1.24ubuntu2) over (1.23ubuntu3) ... Setting up init (1.24ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11437 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.27.1-1ubuntu3_armhf.deb ... Unpacking libsmartcols1:armhf (2.27.1-1ubuntu3) over (2.26.2-6ubuntu3) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libsmartcols1:armhf (2.27.1-1ubuntu3) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11437 files and directories currently installed.) Preparing to unpack .../libuuid1_2.27.1-1ubuntu3_armhf.deb ... Unpacking libuuid1:armhf (2.27.1-1ubuntu3) over (2.26.2-6ubuntu3) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libuuid1:armhf (2.27.1-1ubuntu3) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11437 files and directories currently installed.) Preparing to unpack .../libblkid1_2.27.1-1ubuntu3_armhf.deb ... Unpacking libblkid1:armhf (2.27.1-1ubuntu3) over (2.26.2-6ubuntu3) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libblkid1:armhf (2.27.1-1ubuntu3) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11437 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.27.1-1ubuntu3_armhf.deb ... Unpacking libfdisk1:armhf (2.27.1-1ubuntu3) over (2.26.2-6ubuntu3) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libfdisk1:armhf (2.27.1-1ubuntu3) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11437 files and directories currently installed.) Preparing to unpack .../debconf_1.5.58ubuntu1_all.deb ... Unpacking debconf (1.5.58ubuntu1) over (1.5.57ubuntu1) ... Setting up debconf (1.5.58ubuntu1) ... Removing obsolete conffile /etc/bash_completion.d/debconf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11438 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.88dsf-59.2ubuntu3_armhf.deb ... Unpacking sysvinit-utils (2.88dsf-59.2ubuntu3) over (2.88dsf-59.2ubuntu2) ... Setting up sysvinit-utils (2.88dsf-59.2ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11438 files and directories currently installed.) Preparing to unpack .../sysv-rc_2.88dsf-59.2ubuntu3_all.deb ... Unpacking sysv-rc (2.88dsf-59.2ubuntu3) over (2.88dsf-59.2ubuntu2) ... Setting up sysv-rc (2.88dsf-59.2ubuntu3) ... Processing triggers for systemd (225-1ubuntu9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11438 files and directories currently installed.) Preparing to unpack .../initscripts_2.88dsf-59.2ubuntu3_armhf.deb ... Unpacking initscripts (2.88dsf-59.2ubuntu3) over (2.88dsf-59.2ubuntu2) ... Processing triggers for systemd (225-1ubuntu9) ... Setting up initscripts (2.88dsf-59.2ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11438 files and directories currently installed.) Preparing to unpack .../util-linux_2.27.1-1ubuntu3_armhf.deb ... Unpacking util-linux (2.27.1-1ubuntu3) over (2.26.2-6ubuntu3) ... Setting up util-linux (2.27.1-1ubuntu3) ... Processing triggers for systemd (225-1ubuntu9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11446 files and directories currently installed.) Preparing to unpack .../libudev1_228-3ubuntu1_armhf.deb ... Unpacking libudev1:armhf (228-3ubuntu1) over (225-1ubuntu9) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libudev1:armhf (228-3ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11446 files and directories currently installed.) Preparing to unpack .../udev_228-3ubuntu1_armhf.deb ... Unpacking udev (228-3ubuntu1) over (225-1ubuntu9) ... Preparing to unpack .../libsystemd0_228-3ubuntu1_armhf.deb ... Unpacking libsystemd0:armhf (228-3ubuntu1) over (225-1ubuntu9) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libsystemd0:armhf (228-3ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11443 files and directories currently installed.) Preparing to unpack .../systemd_228-3ubuntu1_armhf.deb ... Unpacking systemd (228-3ubuntu1) over (225-1ubuntu9) ... Setting up systemd (228-3ubuntu1) ... Installing new version of config file /etc/pam.d/systemd-user ... Installing new version of config file /etc/systemd/journald.conf ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/system.conf ... addgroup: The group `systemd-journal' already exists as a system group. Exiting. Removing obsolete conffile /etc/X11/xinit/xinitrc.d/50-systemd-user.sh ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11441 files and directories currently installed.) Preparing to unpack .../libselinux1_2.4-3_armhf.deb ... Unpacking libselinux1:armhf (2.4-3) over (2.3-2build1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libselinux1:armhf (2.4-3) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11441 files and directories currently installed.) Preparing to unpack .../libtinfo5_6.0+20151024-2ubuntu1_armhf.deb ... Unpacking libtinfo5:armhf (6.0+20151024-2ubuntu1) over (5.9+20150516-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libtinfo5:armhf (6.0+20151024-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11441 files and directories currently installed.) Preparing to unpack .../libncurses5_6.0+20151024-2ubuntu1_armhf.deb ... Unpacking libncurses5:armhf (6.0+20151024-2ubuntu1) over (5.9+20150516-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libncurses5:armhf (6.0+20151024-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11441 files and directories currently installed.) Preparing to unpack .../libncursesw5_6.0+20151024-2ubuntu1_armhf.deb ... Unpacking libncursesw5:armhf (6.0+20151024-2ubuntu1) over (5.9+20150516-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libncursesw5:armhf (6.0+20151024-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Selecting previously unselected package libprocps4:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11441 files and directories currently installed.) Preparing to unpack .../libprocps4_2%3a3.3.10-4ubuntu1_armhf.deb ... Unpacking libprocps4:armhf (2:3.3.10-4ubuntu1) ... Preparing to unpack .../procps_2%3a3.3.10-4ubuntu1_armhf.deb ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Unpacking procps (2:3.3.10-4ubuntu1) over (1:3.3.9-1ubuntu8) ... Preparing to unpack .../libapparmor1_2.10-0ubuntu10_armhf.deb ... Unpacking libapparmor1:armhf (2.10-0ubuntu10) over (2.10-0ubuntu6) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libapparmor1:armhf (2.10-0ubuntu10) ... Processing triggers for systemd (228-3ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11450 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a2.4.5-1ubuntu1_all.deb ... Unpacking libaudit-common (1:2.4.5-1ubuntu1) over (1:2.4.2-1ubuntu1) ... Setting up libaudit-common (1:2.4.5-1ubuntu1) ... (Reading database ... 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Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12049 files and directories currently installed.) Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.110-1ubuntu2_armhf.deb ... Unpacking libdevmapper1.02.1:armhf (2:1.02.110-1ubuntu2) over (2:1.02.99-1ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libdevmapper1.02.1:armhf (2:1.02.110-1ubuntu2) ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12049 files and directories currently installed.) Preparing to unpack .../libpng12-0_1.2.54-1ubuntu1_armhf.deb ... Unpacking libpng12-0:armhf (1.2.54-1ubuntu1) over (1.2.51-0ubuntu3) ... Preparing to unpack .../libsqlite3-0_3.10.0-1_armhf.deb ... Unpacking libsqlite3-0:armhf (3.10.0-1) over (3.8.11.1-1) ... Preparing to unpack .../libssl1.0.0_1.0.2e-1ubuntu1_armhf.deb ... Unpacking libssl1.0.0:armhf (1.0.2e-1ubuntu1) over (1.0.2d-0ubuntu1) ... 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Preparing to unpack .../libcurl3-gnutls_7.45.0-1ubuntu1_armhf.deb ... Unpacking libcurl3-gnutls:armhf (7.45.0-1ubuntu1) over (7.43.0-1ubuntu2) ... Preparing to unpack .../apt-transport-https_1.1.10_armhf.deb ... Unpacking apt-transport-https (1.1.10) over (1.0.10.2ubuntu1) ... Preparing to unpack .../openssl_1.0.2e-1ubuntu1_armhf.deb ... Unpacking openssl (1.0.2e-1ubuntu1) over (1.0.2d-0ubuntu1) ... Preparing to unpack .../advancecomp_1.20-1_armhf.deb ... Unpacking advancecomp (1.20-1) over (1.19-1) ... Preparing to unpack .../cpp_4%3a5.2.1-16ubuntu2_armhf.deb ... Unpacking cpp (4:5.2.1-16ubuntu2) over (4:5.2.1-3ubuntu1) ... Preparing to unpack .../dpkg-dev_1.18.4ubuntu1_all.deb ... Unpacking dpkg-dev (1.18.4ubuntu1) over (1.18.2ubuntu5) ... Preparing to unpack .../libdpkg-perl_1.18.4ubuntu1_all.deb ... Unpacking libdpkg-perl (1.18.4ubuntu1) over (1.18.2ubuntu5) ... Preparing to unpack .../gcc_4%3a5.2.1-16ubuntu2_armhf.deb ... Removing old gcc doc directory. Unpacking gcc (4:5.2.1-16ubuntu2) over (4:5.2.1-3ubuntu1) ... Preparing to unpack .../g++_4%3a5.2.1-16ubuntu2_armhf.deb ... Unpacking g++ (4:5.2.1-16ubuntu2) over (4:5.2.1-3ubuntu1) ... Preparing to unpack .../pkg-create-dbgsym_0.70_all.deb ... Unpacking pkg-create-dbgsym (0.70) over (0.69) ... Preparing to unpack .../pkgbinarymangler_128_all.deb ... Unpacking pkgbinarymangler (128) over (122) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libc-dev-bin (2.21-0ubuntu5) ... Setting up linux-libc-dev:armhf (4.3.0-6.17) ... Setting up libc6-dev:armhf (2.21-0ubuntu5) ... Setting up libgomp1:armhf (5.3.1-5ubuntu3) ... Setting up libatomic1:armhf (5.3.1-5ubuntu3) ... Setting up libasan2:armhf (5.3.1-5ubuntu3) ... Setting up libubsan0:armhf (5.3.1-5ubuntu3) ... Setting up libgmp10:armhf (2:6.1.0+dfsg-2) ... Setting up libisl15:armhf (0.15-3) ... Setting up libmpfr4:armhf (3.1.3-2) ... Setting up cpp-5 (5.3.1-5ubuntu3) ... Setting up libcc1-0:armhf (5.3.1-5ubuntu3) ... Setting up binutils (2.25.90.20160101-1ubuntu2) ... Setting up libgcc-5-dev:armhf (5.3.1-5ubuntu3) ... Setting up gcc-5 (5.3.1-5ubuntu3) ... Setting up libstdc++-5-dev:armhf (5.3.1-5ubuntu3) ... Setting up g++-5 (5.3.1-5ubuntu3) ... Setting up libprocps4:armhf (2:3.3.10-4ubuntu1) ... Setting up procps (2:3.3.10-4ubuntu1) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up udev (228-3ubuntu1) ... Installing new version of config file /etc/init.d/udev ... addgroup: The group `input' already exists as a system group. Exiting. Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of restart. Removing obsolete conffile /etc/init.d/lvm2 ... Setting up perl-modules-5.22 (5.22.1-4) ... Setting up libperl5.22:armhf (5.22.1-4) ... Setting up perl (5.22.1-4) ... Setting up apt (1.1.10) ... Installing new version of config file /etc/apt/apt.conf.d/01-vendor-ubuntu ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... Installing new version of config file /etc/cron.daily/apt ... Installing new version of config file /etc/kernel/postinst.d/apt-auto-removal ... usermod: no changes Setting up libdbus-1-3:armhf (1.10.6-1ubuntu1) ... Setting up libnih1:armhf (1.0.3-4.3ubuntu1) ... Setting up libnih-dbus1:armhf (1.0.3-4.3ubuntu1) ... Setting up libffi6:armhf (3.2.1-4) ... Setting up libp11-kit0:armhf (0.23.2-3) ... Setting up libtasn1-6:armhf (4.7-3) ... Setting up libgnutls-deb0-28:armhf (3.3.18-1ubuntu1) ... Setting up libldap-2.4-2:armhf (2.4.41+dfsg-1ubuntu3) ... Setting up libpng12-0:armhf (1.2.54-1ubuntu1) ... Setting up libsqlite3-0:armhf (3.10.0-1) ... Setting up libssl1.0.0:armhf (1.0.2e-1ubuntu1) ... Setting up dmsetup (2:1.02.110-1ubuntu2) ... Setting up libkrb5support0:armhf (1.13.2+dfsg-4) ... Setting up libk5crypto3:armhf (1.13.2+dfsg-4) ... Setting up libkeyutils1:armhf (1.5.9-8ubuntu1) ... Setting up libkrb5-3:armhf (1.13.2+dfsg-4) ... Setting up libgssapi-krb5-2:armhf (1.13.2+dfsg-4) ... Setting up libidn11:armhf (1.32-3ubuntu1) ... Setting up libcurl3-gnutls:armhf (7.45.0-1ubuntu1) ... Setting up apt-transport-https (1.1.10) ... Setting up openssl (1.0.2e-1ubuntu1) ... Setting up advancecomp (1.20-1) ... Setting up cpp (4:5.2.1-16ubuntu2) ... Setting up libdpkg-perl (1.18.4ubuntu1) ... Setting up dpkg-dev (1.18.4ubuntu1) ... Setting up gcc (4:5.2.1-16ubuntu2) ... Setting up g++ (4:5.2.1-16ubuntu2) ... Setting up pkg-create-dbgsym (0.70) ... Setting up pkgbinarymangler (128) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Processing triggers for systemd (228-3ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-8841486', 'armhf', 'xenial-proposed', '-c', 'chroot:autobuild', '--arch=armhf', '--dist=xenial-proposed', '--purge=never', '--nolog', 'r-base_3.2.3-3.dsc'] Initiating build PACKAGEBUILD-8841486 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 3.2.0-95-highbank #135-Ubuntu SMP PREEMPT Tue Nov 10 14:26:08 UTC 2015 armv7l sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on kishi17.buildd ╔══════════════════════════════════════════════════════════════════════════════╗ ║ r-base 3.2.3-3 (armhf) 13 Jan 2016 06:51 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: r-base Version: 3.2.3-3 Source Version: 3.2.3-3 Distribution: xenial-proposed Machine Architecture: armhf Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/r-base-NDZAVW/r-base-3.2.3' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/r-base-NDZAVW' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-8841486/chroot-autobuild' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Local sources ───────────── r-base_3.2.3-3.dsc exists in .; copying to chroot Check architectures ─────────────────── Check dependencies ────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-kHtHOD/apt_archive/sbuild-build-depends-core-dummy.deb'. Get:1 file:/«BUILDDIR»/resolver-kHtHOD/apt_archive ./ InRelease Ign:1 file:/«BUILDDIR»/resolver-kHtHOD/apt_archive ./ InRelease Get:2 file:/«BUILDDIR»/resolver-kHtHOD/apt_archive ./ Release [2119 B] Get:2 file:/«BUILDDIR»/resolver-kHtHOD/apt_archive ./ Release [2119 B] Get:3 file:/«BUILDDIR»/resolver-kHtHOD/apt_archive ./ Release.gpg Ign:3 file:/«BUILDDIR»/resolver-kHtHOD/apt_archive ./ Release.gpg Get:4 file:/«BUILDDIR»/resolver-kHtHOD/apt_archive ./ Sources [208 B] Get:5 file:/«BUILDDIR»/resolver-kHtHOD/apt_archive ./ Packages [527 B] Ign:4 file:/«BUILDDIR»/resolver-kHtHOD/apt_archive ./ Sources Ign:5 file:/«BUILDDIR»/resolver-kHtHOD/apt_archive ./ Packages Get:4 file:/«BUILDDIR»/resolver-kHtHOD/apt_archive ./ Sources [208 B] Get:5 file:/«BUILDDIR»/resolver-kHtHOD/apt_archive ./ Packages [527 B] Reading package lists... W: The repository 'file:/«BUILDDIR»/resolver-kHtHOD/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libapt-pkg4.16 libisl13 libprocps3 udev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/776 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Get:1 file:/«BUILDDIR»/resolver-kHtHOD/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [776 B] debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12045 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), gcc (>= 4:4.1.0), g++ (>= 4:4.1.0), gfortran (>= 4:4.1.0), libblas-dev, liblapack-dev (>= 3.1.1), tcl8.6-dev, tk8.6-dev, bison, groff-base, libncurses5-dev, libreadline-dev, debhelper (>= 7.2.3), texinfo (>= 4.1-2), libbz2-dev, liblzma-dev, libpcre3-dev, libcurl4-openssl-dev | libcurl4-dev, xdg-utils, zlib1g-dev, libpng-dev, libjpeg-dev, libx11-dev, libxt-dev, x11proto-core-dev, libpango1.0-dev, libcairo2-dev, libtiff5-dev, xvfb, xauth, xfonts-base, texlive-base, texlive-latex-base, texlive-generic-recommended, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, default-jdk, mpack, bash-completion Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), gcc (>= 4:4.1.0), g++ (>= 4:4.1.0), gfortran (>= 4:4.1.0), libblas-dev, liblapack-dev (>= 3.1.1), tcl8.6-dev, tk8.6-dev, bison, groff-base, libncurses5-dev, libreadline-dev, debhelper (>= 7.2.3), texinfo (>= 4.1-2), libbz2-dev, liblzma-dev, libpcre3-dev, libcurl4-openssl-dev | libcurl4-dev, xdg-utils, zlib1g-dev, libpng-dev, libjpeg-dev, libx11-dev, libxt-dev, x11proto-core-dev, libpango1.0-dev, libcairo2-dev, libtiff5-dev, xvfb, xauth, xfonts-base, texlive-base, texlive-latex-base, texlive-generic-recommended, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, default-jdk, mpack, bash-completion dpkg-deb: building package 'sbuild-build-depends-r-base-dummy' in '/«BUILDDIR»/resolver-Fb9XOq/apt_archive/sbuild-build-depends-r-base-dummy.deb'. Get:1 file:/«BUILDDIR»/resolver-Fb9XOq/apt_archive ./ InRelease Ign:1 file:/«BUILDDIR»/resolver-Fb9XOq/apt_archive ./ InRelease Get:2 file:/«BUILDDIR»/resolver-Fb9XOq/apt_archive ./ Release [2119 B] Get:2 file:/«BUILDDIR»/resolver-Fb9XOq/apt_archive ./ Release [2119 B] Get:3 file:/«BUILDDIR»/resolver-Fb9XOq/apt_archive ./ Release.gpg Ign:3 file:/«BUILDDIR»/resolver-Fb9XOq/apt_archive ./ Release.gpg Get:4 file:/«BUILDDIR»/resolver-Fb9XOq/apt_archive ./ Sources [695 B] Get:5 file:/«BUILDDIR»/resolver-Fb9XOq/apt_archive ./ Packages [935 B] Ign:4 file:/«BUILDDIR»/resolver-Fb9XOq/apt_archive ./ Sources Ign:5 file:/«BUILDDIR»/resolver-Fb9XOq/apt_archive ./ Packages Get:4 file:/«BUILDDIR»/resolver-Fb9XOq/apt_archive ./ Sources [695 B] Get:5 file:/«BUILDDIR»/resolver-Fb9XOq/apt_archive ./ Packages [935 B] Reading package lists... W: The repository 'file:/«BUILDDIR»/resolver-Fb9XOq/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install r-base build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libapt-pkg4.16 libisl13 libprocps3 udev Use 'sudo apt autoremove' to remove them. The following additional packages will be installed: bash-completion bison bsdmainutils ca-certificates-java debhelper default-jdk default-jre default-jre-headless dh-strip-nondeterminism file fontconfig fontconfig-config fonts-cabin fonts-comfortaa fonts-crosextra-caladea fonts-crosextra-carlito fonts-dejavu-core fonts-dejavu-extra fonts-ebgaramond fonts-ebgaramond-extra fonts-font-awesome fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga fonts-gfs-solomos fonts-inconsolata fonts-junicode fonts-lato fonts-linuxlibertine fonts-lobster fonts-lobstertwo fonts-oflb-asana-math fonts-roboto fonts-sil-gentium fonts-sil-gentium-basic fonts-sil-gentiumplus fonts-stix gettext gettext-base gfortran gfortran-5 gir1.2-freedesktop gir1.2-glib-2.0 gir1.2-pango-1.0 groff-base intltool-debian java-common libarchive-zip-perl libasound2 libasound2-data libasprintf0v5 libasyncns0 libatk-bridge2.0-0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libatspi2.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libbison-dev libblas-common libblas-dev libblas3 libbsd0 libbz2-dev libcairo-gobject2 libcairo-script-interpreter2 libcairo2 libcairo2-dev libcroco3 libcups2 libcupsfilters1 libcupsimage2 libcurl3 libcurl4-openssl-dev libdatrie1 libdrm-amdgpu1 libdrm-freedreno1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libflac8 libfontconfig1 libfontconfig1-dev libfontenc1 libfreetype6 libfreetype6-dev libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgfortran-5-dev libgfortran3 libgif7 libgirepository-1.0-1 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libgraphite2-3 libgs9 libgs9-common libgtk2.0-0 libgtk2.0-common libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libice-dev libice6 libicu55 libijs-0.35 libintl-perl libjbig-dev libjbig0 libjbig2dec0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjson-c2 libkpathsea6 liblapack-dev liblapack3 liblcms2-2 libllvm3.6v5 liblzma-dev liblzo2-2 libmagic1 libncurses5-dev libnspr4 libnss3 libnss3-nssdb libogg0 libpango-1.0-0 libpango1.0-dev libpangocairo-1.0-0 libpangoft2-1.0-0 libpangoxft-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpcsclite1 libpipeline1 libpixman-1-0 libpixman-1-dev libpng12-dev libpoppler57 libpotrace0 libptexenc1 libpthread-stubs0-dev libpulse0 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline-dev libreadline6-dev libsctp1 libsigsegv2 libsm-dev libsm6 libsndfile1 libsynctex1 libtcl8.6 libtexlua52 libtexluajit2 libtext-unidecode-perl libthai-data libthai0 libtiff5 libtiff5-dev libtiffxx5 libtimedate-perl libtinfo-dev libtk8.6 libunistring0 libvorbis0a libvorbisenc2 libwrap0 libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shm0 libxcb-shm0-dev libxcb-sync1 libxcb1 libxcb1-dev libxcomposite1 libxcursor1 libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxfont1 libxft-dev libxft2 libxi6 libxinerama1 libxkbfile1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml2 libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender-dev libxrender1 libxshmfence1 libxss-dev libxss1 libxt-dev libxt6 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libzzip-0-13 m4 man-db mime-support mpack openjdk-7-jdk openjdk-7-jre openjdk-7-jre-headless pkg-config po-debconf poppler-data preview-latex-style python python-minimal python2.7 python2.7-minimal shared-mime-info t1utils tcl8.6 tcl8.6-dev tex-common texinfo texlive-base texlive-binaries texlive-extra-utils texlive-fonts-extra texlive-fonts-recommended texlive-generic-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures tk8.6 tk8.6-dev ttf-adf-accanthis ttf-adf-gillius ttf-adf-universalis tzdata-java ucf x11-common x11-utils x11-xkb-utils x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-render-dev x11proto-scrnsaver-dev x11proto-xext-dev xauth xdg-utils xfonts-base xfonts-encodings xfonts-utils xkb-data xorg-sgml-doctools xserver-common xtrans-dev xvfb zlib1g-dev Suggested packages: bison-doc wamerican | wordlist whois vacation dh-make fontforge gettext-doc autopoint gfortran-multilib gfortran-doc gfortran-5-multilib gfortran-5-doc libgfortran3-dbg groff equivs libasound2-plugins alsa-utils liblapack-doc-man liblapack-doc libcairo2-doc cups-common libcurl4-doc libcurl3-dbg libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssl-dev libglib2.0-doc fonts-droid texlive-lang-cjk librsvg2-common gvfs libice-doc libintl-xs-perl liblcms2-utils liblzma-doc ncurses-doc imagemagick libpango1.0-doc pcscd pulseaudio readline-doc lksctp-tools libsm-doc libxcb-doc libxext-doc libxt-doc less www-browser mail-transport-agent inews openjdk-7-demo openjdk-7-source visualvm icedtea-7-plugin libnss-mdns sun-java6-fonts fonts-ipafont-gothic fonts-ipafont-mincho ttf-wqy-microhei | ttf-wqy-zenhei fonts-indic libmail-box-perl poppler-utils ghostscript fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum python-doc python-tk python2.7-doc binfmt-support tcl-tclreadline tcl8.6-doc texinfo-doc-nonfree perl-tk gv | postscript-viewer xpdf-reader | pdf-viewer xindy dvidvi dvipng fragmaster latexmk purifyeps chktex latexdiff lacheck cm-super libfile-which-perl libspreadsheet-parseexcel-perl python-pygments texlive-pstricks dot2tex libtcltk-ruby prerex tk8.6-doc mesa-utils gvfs-bin Recommended packages: curl | wget | lynx-cur libasprintf-dev libgettextpo-dev at-spi2-core bzip2-doc libtxc-dxtn-s2tc0 | libtxc-dxtn0 xdg-user-dirs hicolor-icon-theme libgtk2.0-bin tcpd libx11-doc libxml-sax-expat-perl xml-core libgnome-2-0 libgnomevfs2-0 libgconf-2-4 icedtea-7-jre-jamvm libmail-sendmail-perl lmodern ruby wish ghostscript libyaml-tiny-perl ruby | ruby-interpreter libfile-homedir-perl texlive-fonts-extra-doc tipa tex-gyre texlive-fonts-recommended-doc texlive-latex-base-doc texlive-latex-extra-doc texlive-latex-recommended-doc prosper texlive-pictures-doc tk xterm | x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-xserver-utils The following NEW packages will be installed: bash-completion bison bsdmainutils ca-certificates-java debhelper default-jdk default-jre default-jre-headless dh-strip-nondeterminism file fontconfig fontconfig-config fonts-cabin fonts-comfortaa fonts-crosextra-caladea fonts-crosextra-carlito fonts-dejavu-core fonts-dejavu-extra fonts-ebgaramond fonts-ebgaramond-extra fonts-font-awesome fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga fonts-gfs-solomos fonts-inconsolata fonts-junicode fonts-lato fonts-linuxlibertine fonts-lobster fonts-lobstertwo fonts-oflb-asana-math fonts-roboto fonts-sil-gentium fonts-sil-gentium-basic fonts-sil-gentiumplus fonts-stix gettext gettext-base gfortran gfortran-5 gir1.2-freedesktop gir1.2-glib-2.0 gir1.2-pango-1.0 groff-base intltool-debian java-common libarchive-zip-perl libasound2 libasound2-data libasprintf0v5 libasyncns0 libatk-bridge2.0-0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libatspi2.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libbison-dev libblas-common libblas-dev libblas3 libbsd0 libbz2-dev libcairo-gobject2 libcairo-script-interpreter2 libcairo2 libcairo2-dev libcroco3 libcups2 libcupsfilters1 libcupsimage2 libcurl3 libcurl4-openssl-dev libdatrie1 libdrm-amdgpu1 libdrm-freedreno1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libflac8 libfontconfig1 libfontconfig1-dev libfontenc1 libfreetype6 libfreetype6-dev libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgfortran-5-dev libgfortran3 libgif7 libgirepository-1.0-1 libgl1-mesa-dri libgl1-mesa-glx libglapi-mesa libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libgraphite2-3 libgs9 libgs9-common libgtk2.0-0 libgtk2.0-common libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libice-dev libice6 libicu55 libijs-0.35 libintl-perl libjbig-dev libjbig0 libjbig2dec0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjson-c2 libkpathsea6 liblapack-dev liblapack3 liblcms2-2 libllvm3.6v5 liblzma-dev liblzo2-2 libmagic1 libncurses5-dev libnspr4 libnss3 libnss3-nssdb libogg0 libpango-1.0-0 libpango1.0-dev libpangocairo-1.0-0 libpangoft2-1.0-0 libpangoxft-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpcsclite1 libpipeline1 libpixman-1-0 libpixman-1-dev libpng12-dev libpoppler57 libpotrace0 libptexenc1 libpthread-stubs0-dev libpulse0 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline-dev libreadline6-dev libsctp1 libsigsegv2 libsm-dev libsm6 libsndfile1 libsynctex1 libtcl8.6 libtexlua52 libtexluajit2 libtext-unidecode-perl libthai-data libthai0 libtiff5 libtiff5-dev libtiffxx5 libtimedate-perl libtinfo-dev libtk8.6 libunistring0 libvorbis0a libvorbisenc2 libwrap0 libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shm0 libxcb-shm0-dev libxcb-sync1 libxcb1 libxcb1-dev libxcomposite1 libxcursor1 libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxfont1 libxft-dev libxft2 libxi6 libxinerama1 libxkbfile1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml2 libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender-dev libxrender1 libxshmfence1 libxss-dev libxss1 libxt-dev libxt6 libxtst6 libxv1 libxxf86dga1 libxxf86vm1 libzzip-0-13 m4 man-db mime-support mpack openjdk-7-jdk openjdk-7-jre openjdk-7-jre-headless pkg-config po-debconf poppler-data preview-latex-style python python-minimal python2.7 python2.7-minimal sbuild-build-depends-r-base-dummy shared-mime-info t1utils tcl8.6 tcl8.6-dev tex-common texinfo texlive-base texlive-binaries texlive-extra-utils texlive-fonts-extra texlive-fonts-recommended texlive-generic-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures tk8.6 tk8.6-dev ttf-adf-accanthis ttf-adf-gillius ttf-adf-universalis tzdata-java ucf x11-common x11-utils x11-xkb-utils x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-render-dev x11proto-scrnsaver-dev x11proto-xext-dev xauth xdg-utils xfonts-base xfonts-encodings xfonts-utils xkb-data xorg-sgml-doctools xserver-common xtrans-dev xvfb zlib1g-dev 0 upgraded, 308 newly installed, 0 to remove and 0 not upgraded. Need to get 468 MB/468 MB of archives. After this operation, 1420 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-r-base-dummy Authentication warning overridden. Get:1 file:/«BUILDDIR»/resolver-Fb9XOq/apt_archive ./ sbuild-build-depends-r-base-dummy 0.invalid.0 [1178 B] Get:2 http://ftpmaster.internal/ubuntu xenial/main armhf libjson-c2 armhf 0.11-4ubuntu2 [20.5 kB] Get:3 http://ftpmaster.internal/ubuntu xenial/main armhf bash-completion all 1:2.1-4.2ubuntu1 [153 kB] Get:4 http://ftpmaster.internal/ubuntu xenial/main armhf libxau6 armhf 1:1.0.8-1 [7324 B] Get:5 http://ftpmaster.internal/ubuntu xenial/main armhf libxdmcp6 armhf 1:1.1.2-1.1 [9620 B] Get:6 http://ftpmaster.internal/ubuntu xenial/main armhf libxcb1 armhf 1.11.1-1ubuntu1 [36.4 kB] Get:7 http://ftpmaster.internal/ubuntu xenial/main armhf libx11-data all 2:1.6.3-1ubuntu2 [113 kB] Get:8 http://ftpmaster.internal/ubuntu xenial/main armhf libx11-6 armhf 2:1.6.3-1ubuntu2 [514 kB] Get:9 http://ftpmaster.internal/ubuntu xenial/main armhf libxext6 armhf 2:1.3.3-1 [25.1 kB] Get:10 http://ftpmaster.internal/ubuntu xenial/main armhf groff-base armhf 1.22.3-5 [1035 kB] Get:11 http://ftpmaster.internal/ubuntu xenial/main armhf bsdmainutils armhf 9.0.6ubuntu1 [169 kB] Get:12 http://ftpmaster.internal/ubuntu xenial/main armhf libpipeline1 armhf 1.4.1-2 [21.0 kB] Get:13 http://ftpmaster.internal/ubuntu xenial/main armhf man-db armhf 2.7.5-1 [836 kB] Get:14 http://ftpmaster.internal/ubuntu xenial/main armhf fonts-dejavu-core all 2.35-1 [1039 kB] Get:15 http://ftpmaster.internal/ubuntu xenial/main armhf fonts-freefont-ttf all 20120503-4 [4140 kB] Get:16 http://ftpmaster.internal/ubuntu xenial/main armhf ucf all 3.0031 [52.7 kB] Get:17 http://ftpmaster.internal/ubuntu xenial/main armhf fontconfig-config all 2.11.1-0ubuntu6 [48.7 kB] Get:18 http://ftpmaster.internal/ubuntu xenial/main armhf libexpat1 armhf 2.1.0-7 [52.4 kB] Get:19 http://ftpmaster.internal/ubuntu xenial/main armhf libfreetype6 armhf 2.5.2-4ubuntu2 [265 kB] Get:20 http://ftpmaster.internal/ubuntu xenial/main armhf libfontconfig1 armhf 2.11.1-0ubuntu6 [110 kB] Get:21 http://ftpmaster.internal/ubuntu xenial/main armhf fontconfig armhf 2.11.1-0ubuntu6 [175 kB] Get:22 http://ftpmaster.internal/ubuntu xenial/main armhf fonts-lato all 2.0-1 [2693 kB] Get:23 http://ftpmaster.internal/ubuntu xenial/universe armhf fonts-roboto all 1:4.4.4r2-6ubuntu1 [368 kB] Get:24 http://ftpmaster.internal/ubuntu xenial/main armhf libasyncns0 armhf 0.8-5build1 [11.0 kB] Get:25 http://ftpmaster.internal/ubuntu xenial/main armhf libgraphite2-3 armhf 1.2.4-3ubuntu1 [44.1 kB] Get:26 http://ftpmaster.internal/ubuntu xenial/main armhf x11-common all 1:7.7+12ubuntu1 [22.4 kB] Get:27 http://ftpmaster.internal/ubuntu xenial/main armhf libice6 armhf 2:1.0.9-1 [32.7 kB] Get:28 http://ftpmaster.internal/ubuntu xenial/main armhf libjpeg-turbo8 armhf 1.4.2-0ubuntu2 [87.3 kB] Get:29 http://ftpmaster.internal/ubuntu xenial/main armhf liblcms2-2 armhf 2.6-3ubuntu2 [114 kB] Get:30 http://ftpmaster.internal/ubuntu xenial/main armhf liblzo2-2 armhf 2.08-1.2 [44.2 kB] Get:31 http://ftpmaster.internal/ubuntu xenial/main armhf libogg0 armhf 1.3.2-1 [14.6 kB] Get:32 http://ftpmaster.internal/ubuntu xenial/main armhf libpcrecpp0v5 armhf 2:8.35-7.1ubuntu1 [13.3 kB] Get:33 http://ftpmaster.internal/ubuntu xenial/main armhf libsigsegv2 armhf 2.10-4 [13.3 kB] Get:34 http://ftpmaster.internal/ubuntu xenial/main armhf libsm6 armhf 2:1.2.2-1 [13.9 kB] Get:35 http://ftpmaster.internal/ubuntu xenial/main armhf libtcl8.6 armhf 8.6.4+dfsg-2ubuntu1 [773 kB] Get:36 http://ftpmaster.internal/ubuntu xenial/main armhf libxrender1 armhf 1:0.9.9-0ubuntu1 [15.7 kB] Get:37 http://ftpmaster.internal/ubuntu xenial/main armhf libxft2 armhf 2.3.2-1 [30.5 kB] Get:38 http://ftpmaster.internal/ubuntu xenial/main armhf libxss1 armhf 1:1.2.2-1 [7652 B] Get:39 http://ftpmaster.internal/ubuntu xenial/main armhf libtk8.6 armhf 8.6.4+dfsg-2ubuntu1 [616 kB] Get:40 http://ftpmaster.internal/ubuntu xenial/main armhf libunistring0 armhf 0.9.3-5.2ubuntu1 [250 kB] Get:41 http://ftpmaster.internal/ubuntu xenial/main armhf libwrap0 armhf 7.6.q-25 [43.6 kB] Get:42 http://ftpmaster.internal/ubuntu xenial/main armhf libxcomposite1 armhf 1:0.4.4-1 [7080 B] Get:43 http://ftpmaster.internal/ubuntu xenial/main armhf libxfixes3 armhf 1:5.0.1-2 [9820 B] Get:44 http://ftpmaster.internal/ubuntu xenial/main armhf libxcursor1 armhf 1:1.1.14-1 [18.8 kB] Get:45 http://ftpmaster.internal/ubuntu xenial/main armhf libxdamage1 armhf 1:1.1.4-2 [6490 B] Get:46 http://ftpmaster.internal/ubuntu xenial/main armhf libfontenc1 armhf 1:1.1.3-1 [11.7 kB] Get:47 http://ftpmaster.internal/ubuntu xenial/main armhf libxfont1 armhf 1:1.5.1-1 [80.0 kB] Get:48 http://ftpmaster.internal/ubuntu xenial/main armhf libxinerama1 armhf 2:1.1.3-1 [7278 B] Get:49 http://ftpmaster.internal/ubuntu xenial/main armhf libxpm4 armhf 1:3.5.11-1 [28.6 kB] Get:50 http://ftpmaster.internal/ubuntu xenial/main armhf libxshmfence1 armhf 1.2-1 [4848 B] Get:51 http://ftpmaster.internal/ubuntu xenial/main armhf libxtst6 armhf 2:1.2.2-1 [12.0 kB] Get:52 http://ftpmaster.internal/ubuntu 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tzdata-java all 2015g-1 [69.1 kB] Get:63 http://ftpmaster.internal/ubuntu xenial/main armhf libavahi-common-data armhf 0.6.32~rc+dfsg-1ubuntu2 [21.9 kB] Get:64 http://ftpmaster.internal/ubuntu xenial/main armhf libavahi-common3 armhf 0.6.32~rc+dfsg-1ubuntu2 [18.5 kB] Get:65 http://ftpmaster.internal/ubuntu xenial/main armhf libavahi-client3 armhf 0.6.32~rc+dfsg-1ubuntu2 [21.7 kB] Get:66 http://ftpmaster.internal/ubuntu xenial/main armhf libcups2 armhf 2.1.2-1 [170 kB] Get:67 http://ftpmaster.internal/ubuntu xenial/main armhf libjpeg8 armhf 8c-2ubuntu8 [2202 B] Get:68 http://ftpmaster.internal/ubuntu xenial/main armhf libglib2.0-0 armhf 2.47.3-3 [975 kB] Get:69 http://ftpmaster.internal/ubuntu xenial/main armhf libpcsclite1 armhf 1.8.14-1ubuntu1 [18.6 kB] Get:70 http://ftpmaster.internal/ubuntu xenial/main armhf libflac8 armhf 1.3.1-4 [143 kB] Get:71 http://ftpmaster.internal/ubuntu xenial/main armhf libvorbis0a armhf 1.3.4-3 [76.2 kB] Get:72 http://ftpmaster.internal/ubuntu xenial/main armhf libvorbisenc2 armhf 1.3.4-3 [64.5 kB] Get:73 http://ftpmaster.internal/ubuntu xenial/main armhf libsndfile1 armhf 1.0.25-10 [131 kB] Get:74 http://ftpmaster.internal/ubuntu xenial/main armhf libpulse0 armhf 1:7.1-1ubuntu3 [215 kB] Get:75 http://ftpmaster.internal/ubuntu xenial/main armhf libsctp1 armhf 1.0.16+dfsg-3 [7496 B] Get:76 http://ftpmaster.internal/ubuntu xenial/main armhf openjdk-7-jre-headless armhf 7u91-2.6.3-3 [37.5 MB] Get:77 http://ftpmaster.internal/ubuntu xenial/main armhf poppler-data all 0.4.7-7 [1495 kB] Get:78 http://ftpmaster.internal/ubuntu xenial-proposed/main armhf libpython2.7-minimal armhf 2.7.11-3 [334 kB] Get:79 http://ftpmaster.internal/ubuntu xenial-proposed/main armhf python2.7-minimal armhf 2.7.11-3 [1040 kB] Get:80 http://ftpmaster.internal/ubuntu xenial/main armhf python-minimal armhf 2.7.11-1 [28.2 kB] Get:81 http://ftpmaster.internal/ubuntu xenial/main armhf mime-support all 3.59ubuntu1 [31.0 kB] Get:82 http://ftpmaster.internal/ubuntu xenial-proposed/main armhf libpython2.7-stdlib armhf 2.7.11-3 [1833 kB] Get:83 http://ftpmaster.internal/ubuntu xenial-proposed/main armhf python2.7 armhf 2.7.11-3 [217 kB] Get:84 http://ftpmaster.internal/ubuntu xenial/main armhf libpython-stdlib armhf 2.7.11-1 [7640 B] Get:85 http://ftpmaster.internal/ubuntu xenial/main armhf python armhf 2.7.11-1 [137 kB] Get:86 http://ftpmaster.internal/ubuntu xenial/main armhf libjbig0 armhf 2.1-3.1 [24.3 kB] Get:87 http://ftpmaster.internal/ubuntu xenial/main armhf libmagic1 armhf 1:5.25-2ubuntu1 [211 kB] Get:88 http://ftpmaster.internal/ubuntu xenial/main armhf file armhf 1:5.25-2ubuntu1 [20.9 kB] Get:89 http://ftpmaster.internal/ubuntu xenial/main armhf libbsd0 armhf 0.8.1-1 [48.4 kB] Get:90 http://ftpmaster.internal/ubuntu xenial/main armhf xkb-data all 2.12-1ubuntu1 [297 kB] Get:91 http://ftpmaster.internal/ubuntu xenial/main armhf libasprintf0v5 armhf 0.19.6-1ubuntu1 [6666 B] Get:92 http://ftpmaster.internal/ubuntu xenial/main armhf 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libfile-stripnondeterminism-perl all 0.014-1 [10.1 kB] Get:113 http://ftpmaster.internal/ubuntu xenial/main armhf libtimedate-perl all 2.3000-2 [37.5 kB] Get:114 http://ftpmaster.internal/ubuntu xenial/main armhf dh-strip-nondeterminism all 0.014-1 [5596 B] Get:115 http://ftpmaster.internal/ubuntu xenial/main armhf debhelper all 9.20151225ubuntu1 [744 kB] Get:116 http://ftpmaster.internal/ubuntu xenial/main armhf libasound2-data all 1.1.0-0ubuntu1 [29.4 kB] Get:117 http://ftpmaster.internal/ubuntu xenial/main armhf libasound2 armhf 1.1.0-0ubuntu1 [299 kB] Get:118 http://ftpmaster.internal/ubuntu xenial/main armhf libtiff5 armhf 4.0.6-1 [128 kB] Get:119 http://ftpmaster.internal/ubuntu xenial/main armhf libgdk-pixbuf2.0-common all 2.32.2-1ubuntu1 [9996 B] Get:120 http://ftpmaster.internal/ubuntu xenial/main armhf libgdk-pixbuf2.0-0 armhf 2.32.2-1ubuntu1 [143 kB] Get:121 http://ftpmaster.internal/ubuntu xenial/main armhf libgif7 armhf 5.1.1-0.2 [27.5 kB] Get:122 http://ftpmaster.internal/ubuntu xenial/main armhf libgtk2.0-common all 2.24.29-1ubuntu1 [122 kB] Get:123 http://ftpmaster.internal/ubuntu xenial/main armhf libatk1.0-data all 2.18.0-1 [17.1 kB] Get:124 http://ftpmaster.internal/ubuntu xenial/main armhf libatk1.0-0 armhf 2.18.0-1 [49.9 kB] Get:125 http://ftpmaster.internal/ubuntu xenial/main armhf libpixman-1-0 armhf 0.33.4-1 [160 kB] Get:126 http://ftpmaster.internal/ubuntu xenial/main armhf libxcb-render0 armhf 1.11.1-1ubuntu1 [10.9 kB] Get:127 http://ftpmaster.internal/ubuntu xenial/main armhf libxcb-shm0 armhf 1.11.1-1ubuntu1 [5398 B] Get:128 http://ftpmaster.internal/ubuntu xenial/main armhf libcairo2 armhf 1.14.6-1 [489 kB] Get:129 http://ftpmaster.internal/ubuntu xenial/main armhf libthai-data all 0.1.24-1 [131 kB] Get:130 http://ftpmaster.internal/ubuntu xenial/main armhf libdatrie1 armhf 0.2.10-1 [13.7 kB] Get:131 http://ftpmaster.internal/ubuntu xenial/main armhf libthai0 armhf 0.1.24-1 [13.9 kB] Get:132 http://ftpmaster.internal/ubuntu xenial/main armhf libpango-1.0-0 armhf 1.38.1-1 [132 kB] Get:133 http://ftpmaster.internal/ubuntu xenial/main armhf libharfbuzz0b armhf 1.0.1-1build2 [122 kB] Get:134 http://ftpmaster.internal/ubuntu xenial/main armhf libpangoft2-1.0-0 armhf 1.38.1-1 [28.7 kB] Get:135 http://ftpmaster.internal/ubuntu xenial/main armhf libpangocairo-1.0-0 armhf 1.38.1-1 [17.5 kB] Get:136 http://ftpmaster.internal/ubuntu xenial/main armhf libxi6 armhf 2:1.7.5-1 [24.6 kB] Get:137 http://ftpmaster.internal/ubuntu xenial/main armhf libxrandr2 armhf 2:1.5.0-1 [14.9 kB] Get:138 http://ftpmaster.internal/ubuntu xenial/main armhf libgtk2.0-0 armhf 2.24.29-1ubuntu1 [1522 kB] Get:139 http://ftpmaster.internal/ubuntu xenial/main armhf libglapi-mesa armhf 11.0.8-1ubuntu1 [34.9 kB] Get:140 http://ftpmaster.internal/ubuntu xenial/main armhf libx11-xcb1 armhf 2:1.6.3-1ubuntu2 [8868 B] Get:141 http://ftpmaster.internal/ubuntu xenial/main armhf libxcb-dri2-0 armhf 1.11.1-1ubuntu1 [6640 B] Get:142 http://ftpmaster.internal/ubuntu xenial/main armhf libxcb-dri3-0 armhf 1.11.1-1ubuntu1 [4996 B] Get:143 http://ftpmaster.internal/ubuntu xenial/main armhf libxcb-glx0 armhf 1.11.1-1ubuntu1 [19.2 kB] Get:144 http://ftpmaster.internal/ubuntu xenial/main armhf libxcb-present0 armhf 1.11.1-1ubuntu1 [5222 B] Get:145 http://ftpmaster.internal/ubuntu xenial/main armhf libxcb-sync1 armhf 1.11.1-1ubuntu1 [7864 B] Get:146 http://ftpmaster.internal/ubuntu xenial/main armhf libdrm-amdgpu1 armhf 2.4.65-3 [14.7 kB] Get:147 http://ftpmaster.internal/ubuntu xenial/main armhf libdrm-freedreno1 armhf 2.4.65-3 [13.7 kB] Get:148 http://ftpmaster.internal/ubuntu xenial/main armhf libdrm-nouveau2 armhf 2.4.65-3 [13.1 kB] Get:149 http://ftpmaster.internal/ubuntu xenial/main armhf libdrm-radeon1 armhf 2.4.65-3 [19.1 kB] Get:150 http://ftpmaster.internal/ubuntu xenial/main armhf libllvm3.6v5 armhf 1:3.6.2-3ubuntu1 [7545 kB] Get:151 http://ftpmaster.internal/ubuntu xenial/main armhf libgl1-mesa-dri armhf 11.0.8-1ubuntu1 [2820 kB] Get:152 http://ftpmaster.internal/ubuntu xenial/main armhf libgl1-mesa-glx armhf 11.0.8-1ubuntu1 [131 kB] Get:153 http://ftpmaster.internal/ubuntu xenial/main armhf libatspi2.0-0 armhf 2.18.3-1ubuntu1 [48.8 kB] Get:154 http://ftpmaster.internal/ubuntu xenial/main armhf libatk-bridge2.0-0 armhf 2.18.1-1ubuntu1 [45.0 kB] Get:155 http://ftpmaster.internal/ubuntu xenial/main armhf libxt6 armhf 1:1.1.5-0ubuntu1 [130 kB] Get:156 http://ftpmaster.internal/ubuntu xenial/main armhf libxmu6 armhf 2:1.1.2-2 [38.3 kB] Get:157 http://ftpmaster.internal/ubuntu xenial/main armhf libxaw7 armhf 2:1.0.13-1 [141 kB] Get:158 http://ftpmaster.internal/ubuntu xenial/main armhf libxcb-shape0 armhf 1.11.1-1ubuntu1 [5510 B] Get:159 http://ftpmaster.internal/ubuntu xenial/main armhf x11-utils armhf 7.7+3 [173 kB] Get:160 http://ftpmaster.internal/ubuntu xenial/main armhf libatk-wrapper-java all 0.33.3-5 [33.7 kB] Get:161 http://ftpmaster.internal/ubuntu xenial/main armhf libatk-wrapper-java-jni armhf 0.33.3-5 [22.6 kB] Get:162 http://ftpmaster.internal/ubuntu xenial/main armhf openjdk-7-jre armhf 7u91-2.6.3-3 [152 kB] Get:163 http://ftpmaster.internal/ubuntu xenial/main armhf default-jre armhf 2:1.7-52.1 [966 B] Get:164 http://ftpmaster.internal/ubuntu xenial/main armhf openjdk-7-jdk armhf 7u91-2.6.3-3 [13.7 MB] Get:165 http://ftpmaster.internal/ubuntu xenial/main armhf default-jdk armhf 2:1.7-52.1 [958 B] Get:166 http://ftpmaster.internal/ubuntu xenial/universe armhf fonts-cabin all 1.5-2 [140 kB] Get:167 http://ftpmaster.internal/ubuntu xenial/universe armhf fonts-comfortaa all 2.003-1 [131 kB] Get:168 http://ftpmaster.internal/ubuntu xenial/universe armhf fonts-crosextra-caladea all 20130214-1 [82.3 kB] Get:169 http://ftpmaster.internal/ubuntu xenial/universe armhf fonts-crosextra-carlito all 20130920-1 [742 kB] Get:170 http://ftpmaster.internal/ubuntu xenial/main armhf fonts-dejavu-extra all 2.35-1 [1749 kB] Get:171 http://ftpmaster.internal/ubuntu xenial/universe armhf fonts-ebgaramond all 0.015+git20130628-3 [651 kB] Get:172 http://ftpmaster.internal/ubuntu xenial/universe armhf fonts-ebgaramond-extra all 0.015+git20130628-3 [933 kB] Get:173 http://ftpmaster.internal/ubuntu xenial/main armhf fonts-font-awesome all 4.4.0~dfsg-1 [491 kB] Get:174 http://ftpmaster.internal/ubuntu xenial/universe armhf fonts-freefont-otf all 20120503-4 [3068 kB] Get:175 http://ftpmaster.internal/ubuntu xenial/universe armhf fonts-gfs-artemisia all 1.1-5 [260 kB] Get:176 http://ftpmaster.internal/ubuntu xenial/universe armhf fonts-gfs-complutum all 1.1-6 [41.6 kB] Get:177 http://ftpmaster.internal/ubuntu xenial/universe armhf fonts-gfs-didot all 1.1-6 [278 kB] Get:178 http://ftpmaster.internal/ubuntu xenial/universe armhf fonts-gfs-neohellenic all 1.1-6 [215 kB] Get:179 http://ftpmaster.internal/ubuntu xenial/universe armhf fonts-gfs-olga all 1.1-5 [33.4 kB] Get:180 http://ftpmaster.internal/ubuntu xenial/universe armhf fonts-gfs-solomos all 1.1-5 [40.7 kB] Get:181 http://ftpmaster.internal/ubuntu xenial/universe armhf fonts-inconsolata all 001.010-5 [61.8 kB] Get:182 http://ftpmaster.internal/ubuntu xenial/universe armhf fonts-junicode all 0.7.8-2 [642 kB] Get:183 http://ftpmaster.internal/ubuntu xenial/universe armhf fonts-linuxlibertine all 5.3.0-2 [1688 kB] Get:184 http://ftpmaster.internal/ubuntu xenial/universe armhf fonts-lobster all 2.0-2 [38.7 kB] Get:185 http://ftpmaster.internal/ubuntu xenial/universe armhf fonts-lobstertwo all 2.0-2 [92.7 kB] Get:186 http://ftpmaster.internal/ubuntu xenial/universe armhf fonts-oflb-asana-math all 000.907-6 [246 kB] Get:187 http://ftpmaster.internal/ubuntu xenial/universe armhf fonts-sil-gentium all 20081126:1.03-1 [247 kB] Get:188 http://ftpmaster.internal/ubuntu xenial/universe armhf fonts-sil-gentium-basic all 1.1-7 [379 kB] Get:189 http://ftpmaster.internal/ubuntu xenial/universe armhf fonts-sil-gentiumplus all 5.000-1 [2805 kB] Get:190 http://ftpmaster.internal/ubuntu xenial-proposed/main armhf libgfortran3 armhf 5.3.1-5ubuntu3 [164 kB] Get:191 http://ftpmaster.internal/ubuntu xenial-proposed/main armhf libgfortran-5-dev armhf 5.3.1-5ubuntu3 [193 kB] Get:192 http://ftpmaster.internal/ubuntu xenial-proposed/main armhf gfortran-5 armhf 5.3.1-5ubuntu3 [24.5 MB] Get:193 http://ftpmaster.internal/ubuntu xenial/main armhf gfortran armhf 4:5.2.1-16ubuntu2 [1292 B] Get:194 http://ftpmaster.internal/ubuntu xenial/main armhf gir1.2-freedesktop armhf 1.46.0-3ubuntu1 [5740 B] Get:195 http://ftpmaster.internal/ubuntu xenial/main armhf libpangoxft-1.0-0 armhf 1.38.1-1 [12.8 kB] Get:196 http://ftpmaster.internal/ubuntu xenial/main armhf gir1.2-pango-1.0 armhf 1.38.1-1 [21.0 kB] Get:197 http://ftpmaster.internal/ubuntu xenial-proposed/main armhf libblas-common armhf 3.6.0-2 [5812 B] Get:198 http://ftpmaster.internal/ubuntu xenial-proposed/main armhf libblas3 armhf 3.6.0-2 [103 kB] Get:199 http://ftpmaster.internal/ubuntu xenial-proposed/main armhf libblas-dev armhf 3.6.0-2 [109 kB] Get:200 http://ftpmaster.internal/ubuntu xenial/main armhf libbz2-dev armhf 1.0.6-8 [27.8 kB] Get:201 http://ftpmaster.internal/ubuntu xenial/main armhf libcairo-gobject2 armhf 1.14.6-1 [16.2 kB] Get:202 http://ftpmaster.internal/ubuntu xenial/main armhf libcairo-script-interpreter2 armhf 1.14.6-1 [45.4 kB] Get:203 http://ftpmaster.internal/ubuntu xenial/main armhf libexpat1-dev armhf 2.1.0-7 [104 kB] Get:204 http://ftpmaster.internal/ubuntu xenial/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-2ubuntu4 [161 kB] Get:205 http://ftpmaster.internal/ubuntu xenial/main armhf libpng12-dev armhf 1.2.54-1ubuntu1 [174 kB] Get:206 http://ftpmaster.internal/ubuntu xenial/main armhf libfreetype6-dev armhf 2.5.2-4ubuntu2 [582 kB] Get:207 http://ftpmaster.internal/ubuntu xenial/main armhf pkg-config armhf 0.29-2ubuntu2 [41.4 kB] Get:208 http://ftpmaster.internal/ubuntu xenial/main armhf libfontconfig1-dev armhf 2.11.1-0ubuntu6 [625 kB] Get:209 http://ftpmaster.internal/ubuntu xenial/main armhf xorg-sgml-doctools all 1:1.11-1 [12.9 kB] Get:210 http://ftpmaster.internal/ubuntu xenial/main armhf x11proto-core-dev all 7.0.28-0ubuntu2 [250 kB] Get:211 http://ftpmaster.internal/ubuntu xenial/main armhf libxau-dev armhf 1:1.0.8-1 [9438 B] Get:212 http://ftpmaster.internal/ubuntu xenial/main armhf libxdmcp-dev armhf 1:1.1.2-1.1 [23.7 kB] Get:213 http://ftpmaster.internal/ubuntu xenial/main armhf x11proto-input-dev all 2.3.1-1 [118 kB] Get:214 http://ftpmaster.internal/ubuntu xenial/main armhf x11proto-kb-dev all 1.0.7-0ubuntu1 [224 kB] Get:215 http://ftpmaster.internal/ubuntu xenial/main armhf xtrans-dev all 1.3.5-1 [70.5 kB] Get:216 http://ftpmaster.internal/ubuntu xenial/main armhf libpthread-stubs0-dev armhf 0.3-4 [4084 B] Get:217 http://ftpmaster.internal/ubuntu xenial/main armhf libxcb1-dev armhf 1.11.1-1ubuntu1 [70.7 kB] Get:218 http://ftpmaster.internal/ubuntu xenial/main armhf libx11-dev armhf 2:1.6.3-1ubuntu2 [583 kB] Get:219 http://ftpmaster.internal/ubuntu xenial/main armhf x11proto-render-dev all 2:0.11.1-2 [20.1 kB] Get:220 http://ftpmaster.internal/ubuntu xenial/main armhf libxrender-dev armhf 1:0.9.9-0ubuntu1 [21.7 kB] Get:221 http://ftpmaster.internal/ubuntu xenial/main armhf x11proto-xext-dev all 7.3.0-1 [212 kB] Get:222 http://ftpmaster.internal/ubuntu xenial/main armhf libxext-dev armhf 2:1.3.3-1 [77.8 kB] Get:223 http://ftpmaster.internal/ubuntu xenial/main armhf libice-dev armhf 2:1.0.9-1 [39.6 kB] Get:224 http://ftpmaster.internal/ubuntu xenial/main armhf libsm-dev armhf 2:1.2.2-1 [14.8 kB] Get:225 http://ftpmaster.internal/ubuntu xenial/main armhf libpixman-1-dev armhf 0.33.4-1 [180 kB] Get:226 http://ftpmaster.internal/ubuntu xenial/main armhf libxcb-render0-dev armhf 1.11.1-1ubuntu1 [15.1 kB] Get:227 http://ftpmaster.internal/ubuntu xenial/main armhf libxcb-shm0-dev armhf 1.11.1-1ubuntu1 [6624 B] Get:228 http://ftpmaster.internal/ubuntu xenial/main armhf libglib2.0-bin armhf 2.47.3-3 [37.5 kB] Get:229 http://ftpmaster.internal/ubuntu xenial/main armhf libpcre16-3 armhf 2:8.35-7.1ubuntu1 [124 kB] Get:230 http://ftpmaster.internal/ubuntu xenial/main armhf libpcre32-3 armhf 2:8.35-7.1ubuntu1 [117 kB] Get:231 http://ftpmaster.internal/ubuntu xenial/main armhf libpcre3-dev armhf 2:8.35-7.1ubuntu1 [460 kB] Get:232 http://ftpmaster.internal/ubuntu xenial/main armhf libglib2.0-dev armhf 2.47.3-3 [1279 kB] Get:233 http://ftpmaster.internal/ubuntu xenial/main armhf libcairo2-dev armhf 1.14.6-1 [520 kB] Get:234 http://ftpmaster.internal/ubuntu xenial/main armhf libcupsfilters1 armhf 1.4.0-1 [71.6 kB] Get:235 http://ftpmaster.internal/ubuntu xenial/main armhf libcupsimage2 armhf 2.1.2-1 [14.2 kB] Get:236 http://ftpmaster.internal/ubuntu xenial/main armhf libcurl3 armhf 7.45.0-1ubuntu1 [160 kB] Get:237 http://ftpmaster.internal/ubuntu xenial/main armhf libcurl4-openssl-dev armhf 7.45.0-1ubuntu1 [240 kB] Get:238 http://ftpmaster.internal/ubuntu xenial/main armhf libijs-0.35 armhf 0.35-11 [14.1 kB] Get:239 http://ftpmaster.internal/ubuntu xenial/main armhf libjbig2dec0 armhf 0.12+20150918-1 [48.0 kB] Get:240 http://ftpmaster.internal/ubuntu xenial/main armhf libpaper1 armhf 1.1.24+nmu4ubuntu1 [13.0 kB] Get:241 http://ftpmaster.internal/ubuntu xenial/main armhf libgs9-common all 9.16~dfsg~0-0ubuntu3 [2938 kB] Get:242 http://ftpmaster.internal/ubuntu xenial/main armhf libgs9 armhf 9.16~dfsg~0-0ubuntu3 [1782 kB] Get:243 http://ftpmaster.internal/ubuntu xenial/main armhf libharfbuzz-icu0 armhf 1.0.1-1build2 [4866 B] Get:244 http://ftpmaster.internal/ubuntu xenial/main armhf libharfbuzz-gobject0 armhf 1.0.1-1build2 [10.1 kB] Get:245 http://ftpmaster.internal/ubuntu xenial/main armhf libharfbuzz-dev armhf 1.0.1-1build2 [169 kB] Get:246 http://ftpmaster.internal/ubuntu xenial/main armhf libintl-perl all 1.24-1build1 [735 kB] Get:247 http://ftpmaster.internal/ubuntu xenial/main armhf libjpeg-turbo8-dev armhf 1.4.2-0ubuntu2 [221 kB] Get:248 http://ftpmaster.internal/ubuntu xenial/main armhf libjpeg8-dev armhf 8c-2ubuntu8 [1554 B] Get:249 http://ftpmaster.internal/ubuntu xenial/main armhf libjpeg-dev armhf 8c-2ubuntu8 [1554 B] Get:250 http://ftpmaster.internal/ubuntu xenial/main armhf libkpathsea6 armhf 2015.20150524.37493-7build4 [46.4 kB] Get:251 http://ftpmaster.internal/ubuntu xenial-proposed/main armhf liblapack3 armhf 3.6.0-2 [1502 kB] Get:252 http://ftpmaster.internal/ubuntu xenial-proposed/main armhf liblapack-dev armhf 3.6.0-2 [1496 kB] Get:253 http://ftpmaster.internal/ubuntu xenial/main armhf libtinfo-dev armhf 6.0+20151024-2ubuntu1 [67.2 kB] Get:254 http://ftpmaster.internal/ubuntu xenial/main armhf libncurses5-dev armhf 6.0+20151024-2ubuntu1 [155 kB] Get:255 http://ftpmaster.internal/ubuntu xenial/main armhf libxft-dev armhf 2.3.2-1 [40.4 kB] Get:256 http://ftpmaster.internal/ubuntu xenial/main armhf libpango1.0-dev armhf 1.38.1-1 [255 kB] Get:257 http://ftpmaster.internal/ubuntu xenial/main armhf libpaper-utils armhf 1.1.24+nmu4ubuntu1 [8000 B] Get:258 http://ftpmaster.internal/ubuntu xenial/main armhf libpoppler57 armhf 0.38.0-0ubuntu1 [650 kB] Get:259 http://ftpmaster.internal/ubuntu xenial/main armhf libpotrace0 armhf 1.13-2 [15.1 kB] Get:260 http://ftpmaster.internal/ubuntu xenial/main armhf libptexenc1 armhf 2015.20150524.37493-7build4 [32.3 kB] Get:261 http://ftpmaster.internal/ubuntu xenial/main armhf libreadline6-dev armhf 6.3-8ubuntu1 [109 kB] Get:262 http://ftpmaster.internal/ubuntu xenial/main armhf libreadline-dev armhf 6.3-8ubuntu1 [1042 B] Get:263 http://ftpmaster.internal/ubuntu xenial/main armhf libsynctex1 armhf 2015.20150524.37493-7build4 [34.9 kB] Get:264 http://ftpmaster.internal/ubuntu xenial/main armhf libtexlua52 armhf 2015.20150524.37493-7build4 [68.5 kB] Get:265 http://ftpmaster.internal/ubuntu xenial/main armhf libtexluajit2 armhf 2015.20150524.37493-7build4 [172 kB] Get:266 http://ftpmaster.internal/ubuntu xenial/main armhf libtext-unidecode-perl all 1.27-1 [103 kB] Get:267 http://ftpmaster.internal/ubuntu xenial/main armhf libjbig-dev armhf 2.1-3.1 [22.5 kB] Get:268 http://ftpmaster.internal/ubuntu xenial/main armhf liblzma-dev armhf 5.1.1alpha+20120614-2ubuntu2 [130 kB] Get:269 http://ftpmaster.internal/ubuntu xenial/main armhf libtiffxx5 armhf 4.0.6-1 [5742 B] Get:270 http://ftpmaster.internal/ubuntu xenial/main armhf libtiff5-dev armhf 4.0.6-1 [250 kB] Get:271 http://ftpmaster.internal/ubuntu xenial/main armhf libxkbfile1 armhf 1:1.0.9-0ubuntu1 [56.5 kB] Get:272 http://ftpmaster.internal/ubuntu xenial/main armhf libxml-namespacesupport-perl all 1.11-1 [13.2 kB] Get:273 http://ftpmaster.internal/ubuntu xenial/main armhf libxml-sax-base-perl all 1.07-1 [21.5 kB] Get:274 http://ftpmaster.internal/ubuntu xenial/main armhf libxml-sax-perl all 0.99+dfsg-2ubuntu1 [64.6 kB] Get:275 http://ftpmaster.internal/ubuntu xenial/main armhf libxml-libxml-perl armhf 2.0123+dfsg-1build1 [298 kB] Get:276 http://ftpmaster.internal/ubuntu xenial/main armhf x11proto-scrnsaver-dev all 1.2.2-1 [25.0 kB] Get:277 http://ftpmaster.internal/ubuntu xenial/main armhf libxss-dev armhf 1:1.2.2-1 [12.1 kB] Get:278 http://ftpmaster.internal/ubuntu xenial/main armhf libxt-dev armhf 1:1.1.5-0ubuntu1 [367 kB] Get:279 http://ftpmaster.internal/ubuntu xenial/universe armhf mpack armhf 1.6-8 [36.4 kB] Get:280 http://ftpmaster.internal/ubuntu xenial/main armhf tex-common all 6.04 [545 kB] Get:281 http://ftpmaster.internal/ubuntu xenial/main armhf preview-latex-style all 11.88-1.1ubuntu1 [184 kB] Get:282 http://ftpmaster.internal/ubuntu xenial/main armhf t1utils armhf 1.39-2 [47.2 kB] Get:283 http://ftpmaster.internal/ubuntu xenial/main armhf tcl8.6 armhf 8.6.4+dfsg-2ubuntu1 [14.2 kB] Get:284 http://ftpmaster.internal/ubuntu xenial/main armhf tcl8.6-dev armhf 8.6.4+dfsg-2ubuntu1 [801 kB] Get:285 http://ftpmaster.internal/ubuntu xenial/main armhf texinfo armhf 6.0.0.dfsg.1-4 [573 kB] Get:286 http://ftpmaster.internal/ubuntu xenial/main armhf texlive-binaries armhf 2015.20150524.37493-7build4 [7048 kB] Get:287 http://ftpmaster.internal/ubuntu xenial/main armhf xdg-utils all 1.1.0~rc3+git20150907-1ubuntu3 [58.1 kB] Get:288 http://ftpmaster.internal/ubuntu xenial/main armhf texlive-base all 2015.20151225-1 [18.2 MB] Get:289 http://ftpmaster.internal/ubuntu xenial/main armhf texlive-latex-base all 2015.20151225-1 [882 kB] Get:290 http://ftpmaster.internal/ubuntu xenial/main armhf texlive-extra-utils all 2015.20151225-2 [11.9 MB] Get:291 http://ftpmaster.internal/ubuntu xenial/universe armhf ttf-adf-accanthis all 0.20090423-2 [401 kB] Get:292 http://ftpmaster.internal/ubuntu xenial/universe armhf ttf-adf-gillius all 0.20090423-2 [400 kB] Get:293 http://ftpmaster.internal/ubuntu xenial/universe armhf ttf-adf-universalis all 0.20090423-2 [221 kB] Get:294 http://ftpmaster.internal/ubuntu xenial/universe armhf fonts-stix all 1.1.1-4 [591 kB] Get:295 http://ftpmaster.internal/ubuntu xenial/universe armhf texlive-fonts-extra all 2015.20151225-2 [223 MB] Get:296 http://ftpmaster.internal/ubuntu xenial/main armhf texlive-fonts-recommended all 2015.20151225-1 [5694 kB] Get:297 http://ftpmaster.internal/ubuntu xenial/main armhf texlive-generic-recommended all 2015.20151225-1 [2779 kB] Get:298 http://ftpmaster.internal/ubuntu xenial/main armhf texlive-latex-recommended all 2015.20151225-1 [13.0 MB] Get:299 http://ftpmaster.internal/ubuntu xenial/main armhf texlive-pictures all 2015.20151225-1 [3116 kB] Get:300 http://ftpmaster.internal/ubuntu xenial/main armhf texlive-latex-extra all 2015.20151225-2 [10.9 MB] Get:301 http://ftpmaster.internal/ubuntu xenial/main armhf tk8.6 armhf 8.6.4+dfsg-2ubuntu1 [12.1 kB] Get:302 http://ftpmaster.internal/ubuntu xenial/main armhf tk8.6-dev armhf 8.6.4+dfsg-2ubuntu1 [621 kB] Get:303 http://ftpmaster.internal/ubuntu xenial/main armhf x11-xkb-utils armhf 7.7+2 [136 kB] Get:304 http://ftpmaster.internal/ubuntu xenial/main armhf xfonts-encodings all 1:1.0.4-2 [573 kB] Get:305 http://ftpmaster.internal/ubuntu xenial/main armhf xfonts-utils armhf 1:7.7+3 [69.2 kB] Get:306 http://ftpmaster.internal/ubuntu xenial/main armhf xfonts-base all 1:1.0.4+nmu1 [5914 kB] Get:307 http://ftpmaster.internal/ubuntu xenial/main armhf xserver-common all 2:1.17.3-2ubuntu2 [27.1 kB] Get:308 http://ftpmaster.internal/ubuntu xenial/main armhf xvfb armhf 2:1.17.3-2ubuntu2 [647 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 468 MB in 31s (15.0 MB/s) Selecting previously unselected package libjson-c2:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12045 files and directories currently installed.) Preparing to unpack .../libjson-c2_0.11-4ubuntu2_armhf.deb ... Unpacking libjson-c2:armhf (0.11-4ubuntu2) ... Selecting previously unselected package bash-completion. Preparing to unpack .../bash-completion_1%3a2.1-4.2ubuntu1_all.deb ... Unpacking bash-completion (1:2.1-4.2ubuntu1) ... Selecting previously unselected package libxau6:armhf. 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Selecting previously unselected package sbuild-build-depends-r-base-dummy. Preparing to unpack .../sbuild-build-depends-r-base-dummy.deb ... Unpacking sbuild-build-depends-r-base-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libjson-c2:armhf (0.11-4ubuntu2) ... Setting up bash-completion (1:2.1-4.2ubuntu1) ... Setting up libxau6:armhf (1:1.0.8-1) ... Setting up libxdmcp6:armhf (1:1.1.2-1.1) ... Setting up libxcb1:armhf (1.11.1-1ubuntu1) ... Setting up libx11-data (2:1.6.3-1ubuntu2) ... Setting up libx11-6:armhf (2:1.6.3-1ubuntu2) ... Setting up libxext6:armhf (2:1.3.3-1) ... Setting up groff-base (1.22.3-5) ... Setting up bsdmainutils (9.0.6ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpipeline1:armhf (1.4.1-2) ... Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up fonts-dejavu-core (2.35-1) ... Setting up fonts-freefont-ttf (20120503-4) ... Setting up ucf (3.0031) ... Setting up fontconfig-config (2.11.1-0ubuntu6) ... Setting up libexpat1:armhf (2.1.0-7) ... Setting up libfreetype6:armhf (2.5.2-4ubuntu2) ... Setting up libfontconfig1:armhf (2.11.1-0ubuntu6) ... Setting up fontconfig (2.11.1-0ubuntu6) ... Regenerating fonts cache... done. Setting up fonts-lato (2.0-1) ... Setting up fonts-roboto (1:4.4.4r2-6ubuntu1) ... Setting up libasyncns0:armhf (0.8-5build1) ... Setting up libgraphite2-3:armhf (1.2.4-3ubuntu1) ... Setting up x11-common (1:7.7+12ubuntu1) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:armhf (2:1.0.9-1) ... Setting up libjpeg-turbo8:armhf (1.4.2-0ubuntu2) ... Setting up liblcms2-2:armhf (2.6-3ubuntu2) ... Setting up liblzo2-2:armhf (2.08-1.2) ... Setting up libogg0:armhf (1.3.2-1) ... Setting up libpcrecpp0v5:armhf (2:8.35-7.1ubuntu1) ... Setting up libsigsegv2:armhf (2.10-4) ... Setting up libsm6:armhf (2:1.2.2-1) ... Setting up libtcl8.6:armhf (8.6.4+dfsg-2ubuntu1) ... Setting up libxrender1:armhf (1:0.9.9-0ubuntu1) ... Setting up libxft2:armhf (2.3.2-1) ... Setting up libxss1:armhf (1:1.2.2-1) ... Setting up libtk8.6:armhf (8.6.4+dfsg-2ubuntu1) ... Setting up libunistring0:armhf (0.9.3-5.2ubuntu1) ... Setting up libwrap0:armhf (7.6.q-25) ... Setting up libxcomposite1:armhf (1:0.4.4-1) ... Setting up libxfixes3:armhf (1:5.0.1-2) ... Setting up libxcursor1:armhf (1:1.1.14-1) ... Setting up libxdamage1:armhf (1:1.1.4-2) ... Setting up libfontenc1:armhf (1:1.1.3-1) ... Setting up libxfont1:armhf (1:1.5.1-1) ... Setting up libxinerama1:armhf (2:1.1.3-1) ... Setting up libxpm4:armhf (1:3.5.11-1) ... Setting up libxshmfence1:armhf (1.2-1) ... Setting up libxtst6:armhf (2:1.2.2-1) ... Setting up libxv1:armhf (2:1.0.10-1) ... Setting up libxxf86dga1:armhf (2:1.1.4-1) ... Setting up libxxf86vm1:armhf (1:1.1.4-1) ... Setting up libzzip-0-13:armhf (0.13.62-3) ... Setting up java-common (0.52.1) ... Setting up libnspr4:armhf (2:4.11-1ubuntu1) ... Setting up tzdata-java (2015g-1) ... Setting up libavahi-common-data:armhf (0.6.32~rc+dfsg-1ubuntu2) ... Setting up libavahi-common3:armhf (0.6.32~rc+dfsg-1ubuntu2) ... Setting up libavahi-client3:armhf (0.6.32~rc+dfsg-1ubuntu2) ... Setting up libcups2:armhf (2.1.2-1) ... Setting up libjpeg8:armhf (8c-2ubuntu8) ... Setting up libglib2.0-0:armhf (2.47.3-3) ... No schema files found: doing nothing. Setting up libpcsclite1:armhf (1.8.14-1ubuntu1) ... Setting up libflac8:armhf (1.3.1-4) ... Setting up libvorbis0a:armhf (1.3.4-3) ... Setting up libvorbisenc2:armhf (1.3.4-3) ... Setting up libsndfile1:armhf (1.0.25-10) ... Setting up libpulse0:armhf (1:7.1-1ubuntu3) ... Setting up libsctp1:armhf (1.0.16+dfsg-3) ... Setting up poppler-data (0.4.7-7) ... Setting up mime-support (3.59ubuntu1) ... Setting up libpython2.7-stdlib:armhf (2.7.11-3) ... Setting up python2.7 (2.7.11-3) ... Setting up libpython-stdlib:armhf (2.7.11-1) ... Setting up python (2.7.11-1) ... Setting up libjbig0:armhf (2.1-3.1) ... Setting up libmagic1:armhf (1:5.25-2ubuntu1) ... Setting up file (1:5.25-2ubuntu1) ... Setting up libbsd0:armhf (0.8.1-1) ... Setting up xkb-data (2.12-1ubuntu1) ... Setting up libasprintf0v5:armhf (0.19.6-1ubuntu1) ... Setting up gettext-base (0.19.6-1ubuntu1) ... Setting up libgirepository-1.0-1:armhf (1.46.0-3ubuntu1) ... Setting up gir1.2-glib-2.0:armhf (1.46.0-3ubuntu1) ... Setting up libdrm2:armhf (2.4.65-3) ... Setting up libedit2:armhf (3.1-20150325-1ubuntu1) ... Setting up libelf1:armhf (0.165-1) ... Setting up libglib2.0-data (2.47.3-3) ... Setting up libicu55:armhf (55.1-6ubuntu1) ... Setting up libxml2:armhf (2.9.2+zdfsg1-4ubuntu2) ... Setting up libxmuu1:armhf (2:1.1.2-2) ... Setting up shared-mime-info (1.5-2) ... Setting up xauth (1:1.0.9-1ubuntu2) ... Setting up m4 (1.4.17-5) ... Setting up libbison-dev:armhf (2:3.0.4.dfsg-1) ... Setting up bison (2:3.0.4.dfsg-1) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode Setting up libcroco3:armhf (0.6.11-1) ... Setting up gettext (0.19.6-1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up po-debconf (1.0.19) ... Setting up libarchive-zip-perl (1.56-2) ... Setting up libfile-stripnondeterminism-perl (0.014-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libasound2-data (1.1.0-0ubuntu1) ... Setting up libasound2:armhf (1.1.0-0ubuntu1) ... Setting up libtiff5:armhf (4.0.6-1) ... Setting up libgdk-pixbuf2.0-common (2.32.2-1ubuntu1) ... Setting up libgdk-pixbuf2.0-0:armhf (2.32.2-1ubuntu1) ... Setting up libgif7:armhf (5.1.1-0.2) ... Setting up libgtk2.0-common (2.24.29-1ubuntu1) ... Setting up libatk1.0-data (2.18.0-1) ... Setting up libatk1.0-0:armhf (2.18.0-1) ... Setting up libpixman-1-0:armhf (0.33.4-1) ... Setting up libxcb-render0:armhf (1.11.1-1ubuntu1) ... Setting up libxcb-shm0:armhf (1.11.1-1ubuntu1) ... Setting up libcairo2:armhf (1.14.6-1) ... Setting up libthai-data (0.1.24-1) ... Setting up libdatrie1:armhf (0.2.10-1) ... Setting up libthai0:armhf (0.1.24-1) ... Setting up libpango-1.0-0:armhf (1.38.1-1) ... Setting up libharfbuzz0b:armhf (1.0.1-1build2) ... Setting up libpangoft2-1.0-0:armhf (1.38.1-1) ... Setting up libpangocairo-1.0-0:armhf (1.38.1-1) ... Setting up libxi6:armhf (2:1.7.5-1) ... Setting up libxrandr2:armhf (2:1.5.0-1) ... Setting up libgtk2.0-0:armhf (2.24.29-1ubuntu1) ... Setting up libglapi-mesa:armhf (11.0.8-1ubuntu1) ... Setting up libx11-xcb1:armhf (2:1.6.3-1ubuntu2) ... Setting up libxcb-dri2-0:armhf (1.11.1-1ubuntu1) ... Setting up libxcb-dri3-0:armhf (1.11.1-1ubuntu1) ... Setting up libxcb-glx0:armhf (1.11.1-1ubuntu1) ... Setting up libxcb-present0:armhf (1.11.1-1ubuntu1) ... Setting up libxcb-sync1:armhf (1.11.1-1ubuntu1) ... Setting up libdrm-amdgpu1:armhf (2.4.65-3) ... Setting up libdrm-freedreno1:armhf (2.4.65-3) ... Setting up libdrm-nouveau2:armhf (2.4.65-3) ... Setting up libdrm-radeon1:armhf (2.4.65-3) ... Setting up libllvm3.6v5:armhf (1:3.6.2-3ubuntu1) ... Setting up libgl1-mesa-dri:armhf (11.0.8-1ubuntu1) ... Setting up libgl1-mesa-glx:armhf (11.0.8-1ubuntu1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/mesa/ld.so.conf to provide /etc/ld.so.conf.d/arm-linux-gnueabihf_GL.conf (arm-linux-gnueabihf_gl_conf) in auto mode Setting up libatspi2.0-0:armhf (2.18.3-1ubuntu1) ... Setting up libatk-bridge2.0-0:armhf (2.18.1-1ubuntu1) ... Setting up libxt6:armhf (1:1.1.5-0ubuntu1) ... Setting up libxmu6:armhf (2:1.1.2-2) ... Setting up libxaw7:armhf (2:1.0.13-1) ... Setting up libxcb-shape0:armhf (1.11.1-1ubuntu1) ... Setting up x11-utils (7.7+3) ... Setting up libatk-wrapper-java (0.33.3-5) ... Setting up libatk-wrapper-java-jni:armhf (0.33.3-5) ... Setting up fonts-cabin (1.5-2) ... Setting up fonts-comfortaa (2.003-1) ... Setting up fonts-crosextra-caladea (20130214-1) ... Setting up fonts-crosextra-carlito (20130920-1) ... Setting up fonts-dejavu-extra (2.35-1) ... Setting up fonts-ebgaramond (0.015+git20130628-3) ... Setting up fonts-ebgaramond-extra (0.015+git20130628-3) ... Setting up fonts-font-awesome (4.4.0~dfsg-1) ... Setting up fonts-freefont-otf (20120503-4) ... Setting up fonts-gfs-artemisia (1.1-5) ... Setting up fonts-gfs-complutum (1.1-6) ... Setting up fonts-gfs-didot (1.1-6) ... Setting up fonts-gfs-neohellenic (1.1-6) ... Setting up fonts-gfs-olga (1.1-5) ... Setting up fonts-gfs-solomos (1.1-5) ... Setting up fonts-inconsolata (001.010-5) ... Setting up fonts-junicode (0.7.8-2) ... Setting up fonts-linuxlibertine (5.3.0-2) ... Setting up fonts-lobster (2.0-2) ... Setting up fonts-lobstertwo (2.0-2) ... Setting up fonts-oflb-asana-math (000.907-6) ... Setting up fonts-sil-gentium (20081126:1.03-1) ... Setting up fonts-sil-gentium-basic (1.1-7) ... Setting up fonts-sil-gentiumplus (5.000-1) ... Setting up libgfortran3:armhf (5.3.1-5ubuntu3) ... Setting up libgfortran-5-dev:armhf (5.3.1-5ubuntu3) ... Setting up gfortran-5 (5.3.1-5ubuntu3) ... Setting up gfortran (4:5.2.1-16ubuntu2) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up gir1.2-freedesktop:armhf (1.46.0-3ubuntu1) ... Setting up libpangoxft-1.0-0:armhf (1.38.1-1) ... Setting up gir1.2-pango-1.0:armhf (1.38.1-1) ... Setting up libblas-common (3.6.0-2) ... Setting up libblas3 (3.6.0-2) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up libblas-dev (3.6.0-2) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode Setting up libbz2-dev:armhf (1.0.6-8) ... Setting up libcairo-gobject2:armhf (1.14.6-1) ... Setting up libcairo-script-interpreter2:armhf (1.14.6-1) ... Setting up libexpat1-dev:armhf (2.1.0-7) ... Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-2ubuntu4) ... Setting up libpng12-dev:armhf (1.2.54-1ubuntu1) ... Setting up libfreetype6-dev:armhf (2.5.2-4ubuntu2) ... Setting up pkg-config (0.29-2ubuntu2) ... Setting up libfontconfig1-dev:armhf (2.11.1-0ubuntu6) ... Setting up xorg-sgml-doctools (1:1.11-1) ... Setting up x11proto-core-dev (7.0.28-0ubuntu2) ... Setting up libxau-dev:armhf (1:1.0.8-1) ... Setting up libxdmcp-dev:armhf (1:1.1.2-1.1) ... Setting up x11proto-input-dev (2.3.1-1) ... Setting up x11proto-kb-dev (1.0.7-0ubuntu1) ... Setting up xtrans-dev (1.3.5-1) ... Setting up libpthread-stubs0-dev:armhf (0.3-4) ... Setting up libxcb1-dev:armhf (1.11.1-1ubuntu1) ... Setting up libx11-dev:armhf (2:1.6.3-1ubuntu2) ... Setting up x11proto-render-dev (2:0.11.1-2) ... Setting up libxrender-dev:armhf (1:0.9.9-0ubuntu1) ... Setting up x11proto-xext-dev (7.3.0-1) ... Setting up libxext-dev:armhf (2:1.3.3-1) ... Setting up libice-dev:armhf (2:1.0.9-1) ... Setting up libsm-dev:armhf (2:1.2.2-1) ... Setting up libpixman-1-dev (0.33.4-1) ... Setting up libxcb-render0-dev:armhf (1.11.1-1ubuntu1) ... Setting up libxcb-shm0-dev:armhf (1.11.1-1ubuntu1) ... Setting up libglib2.0-bin (2.47.3-3) ... Setting up libpcre16-3:armhf (2:8.35-7.1ubuntu1) ... Setting up libpcre32-3:armhf (2:8.35-7.1ubuntu1) ... Setting up libpcre3-dev:armhf (2:8.35-7.1ubuntu1) ... Setting up libglib2.0-dev (2.47.3-3) ... Setting up libcairo2-dev (1.14.6-1) ... Setting up libcupsfilters1:armhf (1.4.0-1) ... Setting up libcupsimage2:armhf (2.1.2-1) ... Setting up libcurl3:armhf (7.45.0-1ubuntu1) ... Setting up libcurl4-openssl-dev:armhf (7.45.0-1ubuntu1) ... Setting up libijs-0.35:armhf (0.35-11) ... Setting up libjbig2dec0 (0.12+20150918-1) ... Setting up libpaper1:armhf (1.1.24+nmu4ubuntu1) ... Creating config file /etc/papersize with new version Setting up libgs9-common (9.16~dfsg~0-0ubuntu3) ... update-alternatives: using /usr/share/ghostscript/9.16 to provide /usr/share/ghostscript/current (ghostscript-current) in auto mode Setting up libgs9 (9.16~dfsg~0-0ubuntu3) ... Setting up libharfbuzz-icu0:armhf (1.0.1-1build2) ... Setting up libharfbuzz-gobject0:armhf (1.0.1-1build2) ... Setting up libharfbuzz-dev (1.0.1-1build2) ... Setting up libintl-perl (1.24-1build1) ... Setting up libjpeg-turbo8-dev:armhf (1.4.2-0ubuntu2) ... Setting up libjpeg8-dev:armhf (8c-2ubuntu8) ... Setting up libjpeg-dev:armhf (8c-2ubuntu8) ... Setting up libkpathsea6:armhf (2015.20150524.37493-7build4) ... Setting up liblapack3 (3.6.0-2) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up liblapack-dev (3.6.0-2) ... update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode Setting up libtinfo-dev:armhf (6.0+20151024-2ubuntu1) ... Setting up libncurses5-dev:armhf (6.0+20151024-2ubuntu1) ... Setting up libxft-dev (2.3.2-1) ... Setting up libpango1.0-dev (1.38.1-1) ... Setting up libpaper-utils (1.1.24+nmu4ubuntu1) ... Setting up libpoppler57:armhf (0.38.0-0ubuntu1) ... Setting up libpotrace0 (1.13-2) ... Setting up libptexenc1:armhf (2015.20150524.37493-7build4) ... Setting up libreadline6-dev:armhf (6.3-8ubuntu1) ... Setting up libreadline-dev:armhf (6.3-8ubuntu1) ... Setting up libsynctex1:armhf (2015.20150524.37493-7build4) ... Setting up libtexlua52:armhf (2015.20150524.37493-7build4) ... Setting up libtexluajit2:armhf (2015.20150524.37493-7build4) ... Setting up libtext-unidecode-perl (1.27-1) ... Setting up libjbig-dev:armhf (2.1-3.1) ... Setting up liblzma-dev:armhf (5.1.1alpha+20120614-2ubuntu2) ... Setting up libtiffxx5:armhf (4.0.6-1) ... Setting up libtiff5-dev:armhf (4.0.6-1) ... Setting up libxkbfile1:armhf (1:1.0.9-0ubuntu1) ... Setting up libxml-namespacesupport-perl (1.11-1) ... Setting up libxml-sax-base-perl (1.07-1) ... Setting up libxml-sax-perl (0.99+dfsg-2ubuntu1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0123+dfsg-1build1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up x11proto-scrnsaver-dev (1.2.2-1) ... Setting up libxss-dev:armhf (1:1.2.2-1) ... Setting up libxt-dev:armhf (1:1.1.5-0ubuntu1) ... Setting up mpack (1.6-8) ... Setting up tex-common (6.04) ... update-language: texlive-base not installed and configured, doing nothing! Setting up preview-latex-style (11.88-1.1ubuntu1) ... Setting up t1utils (1.39-2) ... Setting up tcl8.6 (8.6.4+dfsg-2ubuntu1) ... Setting up tcl8.6-dev:armhf (8.6.4+dfsg-2ubuntu1) ... Setting up texinfo (6.0.0.dfsg.1-4) ... Running mktexlsr. This may take some time. ... done. Setting up texlive-binaries (2015.20150524.37493-7build4) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up xdg-utils (1.1.0~rc3+git20150907-1ubuntu3) ... Setting up ttf-adf-accanthis (0.20090423-2) ... Setting up ttf-adf-gillius (0.20090423-2) ... Setting up ttf-adf-universalis (0.20090423-2) ... Setting up fonts-stix (1.1.1-4) ... Setting up tk8.6 (8.6.4+dfsg-2ubuntu1) ... Setting up tk8.6-dev:armhf (8.6.4+dfsg-2ubuntu1) ... Setting up x11-xkb-utils (7.7+2) ... Setting up xfonts-encodings (1:1.0.4-2) ... Setting up xfonts-utils (1:7.7+3) ... Setting up xfonts-base (1:1.0.4+nmu1) ... Setting up xserver-common (2:1.17.3-2ubuntu2) ... Setting up xvfb (2:1.17.3-2ubuntu2) ... Processing triggers for tex-common (6.04) ... update-language: texlive-base not installed and configured, doing nothing! texlive-base is not ready, skipping fmtutil-sys --all call Setting up texlive-base (2015.20151225-1) ... /usr/bin/tl-paper: setting paper size for dvips to a4. /usr/bin/tl-paper: setting paper size for dvipdfmx to a4. /usr/bin/tl-paper: setting paper size for xdvi to a4. /usr/bin/tl-paper: setting paper size for pdftex to a4. Processing triggers for tex-common (6.04) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Setting up texlive-fonts-extra (2015.20151225-2) ... Setting up texlive-fonts-recommended (2015.20151225-1) ... Setting up texlive-generic-recommended (2015.20151225-1) ... Setting up texlive-latex-base (2015.20151225-1) ... Processing triggers for tex-common (6.04) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Setting up texlive-latex-recommended (2015.20151225-1) ... Setting up texlive-pictures (2015.20151225-1) ... Setting up texlive-extra-utils (2015.20151225-2) ... Processing triggers for tex-common (6.04) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up texlive-latex-extra (2015.20151225-2) ... Processing triggers for tex-common (6.04) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up libnss3-nssdb (2:3.21-1ubuntu2) ... Setting up debhelper (9.20151225ubuntu1) ... Setting up libnss3:armhf (2:3.21-1ubuntu2) ... Setting up openjdk-7-jre-headless:armhf (7u91-2.6.3-3) ... update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up ca-certificates-java (20140324) ... Adding debian:Buypass_Class_2_CA_1.pem Adding debian:RSA_Root_Certificate_1.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:TC_TrustCenter_Class_2_CA_II.pem Adding debian:TÜBİTAK_UEKAE_Kök_Sertifika_Hizmet_Sağlayıcısı_-_Sürüm_3.pem Adding debian:Swisscom_Root_CA_2.pem Adding debian:Taiwan_GRCA.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:ComSign_CA.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Juur-SK.pem Adding debian:ValiCert_Class_1_VA.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:StartCom_Certification_Authority_G2.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:China_Internet_Network_Information_Center_EV_Certificates_Root.pem Adding debian:Camerfirma_Chambers_of_Commerce_Root.pem Adding debian:Certinomis_-_Autorité_Racine.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:EE_Certification_Centre_Root_CA.pem Adding debian:Entrust.net_Secure_Server_CA.pem Adding debian:RSA_Security_2048_v3.pem Adding debian:UTN_DATACorp_SGC_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Buypass_Class_3_CA_1.pem Adding debian:S-TRUST_Universal_Root_CA.pem Adding debian:Izenpe.com.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:Certum_Root_CA.pem Adding debian:DST_ACES_CA_X6.pem Adding debian:Secure_Global_CA.pem Adding debian:Equifax_Secure_eBusiness_CA_1.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:TC_TrustCenter_Class_3_CA_II.pem Adding debian:AddTrust_Qualified_Certificates_Root.pem Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority.pem Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:Thawte_Server_CA.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:GeoTrust_Universal_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:GeoTrust_Universal_CA_2.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:Certigna.pem Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G2.pem Adding debian:thawte_Primary_Root_CA_-_G2.pem Adding debian:ApplicationCA_-_Japanese_Government.pem Adding debian:Sonera_Class_1_Root_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:SG_TRUST_SERVICES_RACINE.pem Adding debian:ComSign_Secured_CA.pem Adding debian:GTE_CyberTrust_Global_Root.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:AC_Raíz_Certicámara_S.A..pem Adding debian:spi-cacert-2008.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:NetLock_Qualified_=Class_QA=_Root.pem Adding debian:Swisscom_Root_EV_CA_2.pem Adding debian:Camerfirma_Global_Chambersign_Root.pem Adding debian:TC_TrustCenter_Universal_CA_I.pem Adding debian:SecureSign_RootCA11.pem Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2007.pem Adding debian:WellsSecure_Public_Root_Certificate_Authority.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:UTN_USERFirst_Hardware_Root_CA.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:EBG_Elektronik_Sertifika_Hizmet_Sağlayıcısı.pem Adding debian:Equifax_Secure_CA.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:AddTrust_Public_Services_Root.pem Adding debian:Comodo_Secure_Services_root.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem Adding debian:SecureTrust_CA.pem Adding debian:AffirmTrust_Premium.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:StartCom_Certification_Authority.pem Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G2.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:CNNIC_ROOT.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:Verisign_Class_4_Public_Primary_Certification_Authority_-_G3.pem Adding debian:S-TRUST_Authentication_and_Encryption_Root_CA_2005_PN.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:AddTrust_Low-Value_Services_Root.pem Adding debian:Microsec_e-Szigno_Root_CA.pem Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Digital_Signature_Trust_Co._Global_CA_3.pem Adding debian:Certplus_Class_2_Primary_CA.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem Adding debian:CA_Disig.pem Adding debian:ACEDICOM_Root.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:AffirmTrust_Networking.pem Adding debian:Equifax_Secure_Global_eBusiness_CA.pem Adding debian:Visa_eCommerce_Root.pem Adding debian:NetLock_Business_=Class_B=_Root.pem Adding debian:Thawte_Premium_Server_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:StartCom_Certification_Authority_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:UTN_USERFirst_Email_Root_CA.pem Adding debian:A-Trust-nQual-03.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:ACCVRAIZ1.pem Adding debian:Deutsche_Telekom_Root_CA_2.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:WoSign_China.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:GeoTrust_Global_CA_2.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:GeoTrust_Global_CA.pem Adding debian:CA_Disig_Root_R1.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority.pem Adding debian:WoSign.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:Digital_Signature_Trust_Co._Global_CA_1.pem Adding debian:NetLock_Express_=Class_C=_Root.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:thawte_Primary_Root_CA.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:NetLock_Notary_=Class_A=_Root.pem Adding debian:DST_Root_CA_X3.pem Adding debian:TURKTRUST_Certificate_Services_Provider_Root_1.pem Adding debian:Swisscom_Root_CA_1.pem Adding debian:thawte_Primary_Root_CA_-_G3.pem Adding debian:Root_CA_Generalitat_Valenciana.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Security_Communication_EV_RootCA1.pem Adding debian:Comodo_Trusted_Services_root.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G2.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:IGC_A.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:EC-ACC.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:AddTrust_External_Root.pem Adding debian:SwissSign_Platinum_CA_-_G2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:ValiCert_Class_2_VA.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:GeoTrust_Primary_Certification_Authority.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:PSCProcert.pem done. Setting up default-jre-headless (2:1.7-52.1) ... Setting up dh-strip-nondeterminism (0.014-1) ... Setting up openjdk-7-jre:armhf (7u91-2.6.3-3) ... update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/jre/bin/policytool to provide /usr/bin/policytool (policytool) in auto mode Setting up default-jre (2:1.7-52.1) ... Setting up openjdk-7-jdk:armhf (7u91-2.6.3-3) ... update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/idlj to provide /usr/bin/idlj (idlj) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/wsimport to provide /usr/bin/wsimport (wsimport) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jsadebugd to provide /usr/bin/jsadebugd (jsadebugd) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/native2ascii to provide /usr/bin/native2ascii (native2ascii) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/javah to provide /usr/bin/javah (javah) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jhat to provide /usr/bin/jhat (jhat) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/extcheck to provide /usr/bin/extcheck (extcheck) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/schemagen to provide /usr/bin/schemagen (schemagen) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/xjc to provide /usr/bin/xjc (xjc) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/appletviewer to provide /usr/bin/appletviewer (appletviewer) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/wsgen to provide /usr/bin/wsgen (wsgen) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-armhf/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode Setting up default-jdk (2:1.7-52.1) ... Setting up sbuild-build-depends-r-base-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Processing triggers for systemd (228-3ubuntu1) ... Processing triggers for ca-certificates (20150426ubuntu1) ... Updating certificates in /etc/ssl/certs... 7 added, 7 removed; done. Running hooks in /etc/ca-certificates/update.d... Replacing debian:Entrust.net_Secure_Server_CA.pem Replacing debian:GTE_CyberTrust_Global_Root.pem Replacing debian:RSA_Root_Certificate_1.pem Replacing debian:Thawte_Premium_Server_CA.pem Replacing debian:Thawte_Server_CA.pem Replacing debian:ValiCert_Class_1_VA.pem Replacing debian:ValiCert_Class_2_VA.pem Removing debian:Entrust.net_Secure_Server_CA.pem Removing debian:GTE_CyberTrust_Global_Root.pem Removing debian:RSA_Root_Certificate_1.pem Removing debian:Thawte_Premium_Server_CA.pem Removing debian:Thawte_Server_CA.pem Removing debian:ValiCert_Class_1_VA.pem Removing debian:ValiCert_Class_2_VA.pem done. done. ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.2.0-95-highbank armhf (armv7l) Toolchain package versions: binutils_2.25.90.20160101-1ubuntu2 dpkg-dev_1.18.4ubuntu1 g++-5_5.3.1-5ubuntu3 gcc-5_5.3.1-5ubuntu3 libc6-dev_2.21-0ubuntu5 libstdc++-5-dev_5.3.1-5ubuntu3 libstdc++6_5.3.1-5ubuntu3 linux-libc-dev_4.3.0-6.17 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.20-1 apt_1.1.10 apt-transport-https_1.1.10 base-files_9.4ubuntu3 base-passwd_3.5.39 bash_4.3-14ubuntu1 bash-completion_1:2.1-4.2ubuntu1 binutils_2.25.90.20160101-1ubuntu2 bison_2:3.0.4.dfsg-1 bsdmainutils_9.0.6ubuntu1 bsdutils_1:2.27.1-1ubuntu3 build-essential_12.1ubuntu2 bzip2_1.0.6-8 ca-certificates_20150426ubuntu1 ca-certificates-java_20140324 coreutils_8.23-4ubuntu2 cpp_4:5.2.1-16ubuntu2 cpp-5_5.3.1-5ubuntu3 dash_0.5.7-4ubuntu2 debconf_1.5.58ubuntu1 debhelper_9.20151225ubuntu1 debianutils_4.5.1 default-jdk_2:1.7-52.1 default-jre_2:1.7-52.1 default-jre-headless_2:1.7-52.1 dh-strip-nondeterminism_0.014-1 diffutils_1:3.3-3 dmsetup_2:1.02.110-1ubuntu2 dpkg_1.18.4ubuntu1 dpkg-dev_1.18.4ubuntu1 e2fslibs_1.42.13-1ubuntu1 e2fsprogs_1.42.13-1ubuntu1 fakeroot_1.20.2-1ubuntu1 file_1:5.25-2ubuntu1 findutils_4.4.2-10 fontconfig_2.11.1-0ubuntu6 fontconfig-config_2.11.1-0ubuntu6 fonts-cabin_1.5-2 fonts-comfortaa_2.003-1 fonts-crosextra-caladea_20130214-1 fonts-crosextra-carlito_20130920-1 fonts-dejavu-core_2.35-1 fonts-dejavu-extra_2.35-1 fonts-ebgaramond_0.015+git20130628-3 fonts-ebgaramond-extra_0.015+git20130628-3 fonts-font-awesome_4.4.0~dfsg-1 fonts-freefont-otf_20120503-4 fonts-freefont-ttf_20120503-4 fonts-gfs-artemisia_1.1-5 fonts-gfs-complutum_1.1-6 fonts-gfs-didot_1.1-6 fonts-gfs-neohellenic_1.1-6 fonts-gfs-olga_1.1-5 fonts-gfs-solomos_1.1-5 fonts-inconsolata_001.010-5 fonts-junicode_0.7.8-2 fonts-lato_2.0-1 fonts-linuxlibertine_5.3.0-2 fonts-lobster_2.0-2 fonts-lobstertwo_2.0-2 fonts-oflb-asana-math_000.907-6 fonts-roboto_1:4.4.4r2-6ubuntu1 fonts-sil-gentium_20081126:1.03-1 fonts-sil-gentium-basic_1.1-7 fonts-sil-gentiumplus_5.000-1 fonts-stix_1.1.1-4 g++_4:5.2.1-16ubuntu2 g++-5_5.3.1-5ubuntu3 gcc_4:5.2.1-16ubuntu2 gcc-5_5.3.1-5ubuntu3 gcc-5-base_5.3.1-5ubuntu3 gettext_0.19.6-1ubuntu1 gettext-base_0.19.6-1ubuntu1 gfortran_4:5.2.1-16ubuntu2 gfortran-5_5.3.1-5ubuntu3 gir1.2-freedesktop_1.46.0-3ubuntu1 gir1.2-glib-2.0_1.46.0-3ubuntu1 gir1.2-pango-1.0_1.38.1-1 gnupg_1.4.19-6ubuntu1 gpgv_1.4.19-6ubuntu1 grep_2.22-1 groff-base_1.22.3-5 gzip_1.6-4ubuntu1 hostname_3.16ubuntu2 init_1.24ubuntu2 initscripts_2.88dsf-59.2ubuntu3 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 java-common_0.52.1 libacl1_2.2.52-2 libapparmor1_2.10-0ubuntu10 libapt-pkg4.16_1.0.10.2ubuntu1 libapt-pkg5.0_1.1.10 libarchive-zip-perl_1.56-2 libasan2_5.3.1-5ubuntu3 libasn1-8-heimdal_1.6~rc2+dfsg-10ubuntu1 libasound2_1.1.0-0ubuntu1 libasound2-data_1.1.0-0ubuntu1 libasprintf0v5_0.19.6-1ubuntu1 libasyncns0_0.8-5build1 libatk-bridge2.0-0_2.18.1-1ubuntu1 libatk-wrapper-java_0.33.3-5 libatk-wrapper-java-jni_0.33.3-5 libatk1.0-0_2.18.0-1 libatk1.0-data_2.18.0-1 libatomic1_5.3.1-5ubuntu3 libatspi2.0-0_2.18.3-1ubuntu1 libattr1_1:2.4.47-2 libaudit-common_1:2.4.5-1ubuntu1 libaudit1_1:2.4.5-1ubuntu1 libavahi-client3_0.6.32~rc+dfsg-1ubuntu2 libavahi-common-data_0.6.32~rc+dfsg-1ubuntu2 libavahi-common3_0.6.32~rc+dfsg-1ubuntu2 libbison-dev_2:3.0.4.dfsg-1 libblas-common_3.6.0-2 libblas-dev_3.6.0-2 libblas3_3.6.0-2 libblkid1_2.27.1-1ubuntu3 libbsd0_0.8.1-1 libbz2-1.0_1.0.6-8 libbz2-dev_1.0.6-8 libc-bin_2.21-0ubuntu5 libc-dev-bin_2.21-0ubuntu5 libc6_2.21-0ubuntu5 libc6-dev_2.21-0ubuntu5 libcairo-gobject2_1.14.6-1 libcairo-script-interpreter2_1.14.6-1 libcairo2_1.14.6-1 libcairo2-dev_1.14.6-1 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_5.3.1-5ubuntu3 libcomerr2_1.42.13-1ubuntu1 libcroco3_0.6.11-1 libcryptsetup4_2:1.6.6-5ubuntu2 libcups2_2.1.2-1 libcupsfilters1_1.4.0-1 libcupsimage2_2.1.2-1 libcurl3_7.45.0-1ubuntu1 libcurl3-gnutls_7.45.0-1ubuntu1 libcurl4-openssl-dev_7.45.0-1ubuntu1 libdatrie1_0.2.10-1 libdb5.3_5.3.28-11 libdbus-1-3_1.10.6-1ubuntu1 libdebconfclient0_0.198ubuntu1 libdevmapper1.02.1_2:1.02.110-1ubuntu2 libdpkg-perl_1.18.4ubuntu1 libdrm-amdgpu1_2.4.65-3 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zlib1g-dev_1:1.2.8.dfsg-2ubuntu4 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: Signature made Tue Jan 12 20:08:56 2016 UTC using RSA key ID AB99A21A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./r-base_3.2.3-3.dsc dpkg-source: info: extracting r-base in r-base-3.2.3 dpkg-source: info: unpacking r-base_3.2.3.orig.tar.gz dpkg-source: info: applying r-base_3.2.3-3.diff.gz dpkg-source: info: upstream files that have been modified: r-base-3.2.3/src/library/grDevices/Makefile.in r-base-3.2.3/src/modules/X11/devX11.c r-base-3.2.3/src/modules/X11/rlogo_icon.h Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C LANGUAGE=en_GB: LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/«PKGBUILDDIR» SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/«PKGBUILDDIR»' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ───────────────── dpkg-buildpackage: source package r-base dpkg-buildpackage: source version 3.2.3-3 dpkg-buildpackage: source distribution unstable dpkg-source --before-build r-base-3.2.3 dpkg-buildpackage: host architecture armhf fakeroot debian/rules clean *** clean *** dh_testdir dh_testroot rm -f configure-stamp \ build-stamp build-indep-stamp build-arch-stamp \ make-stamp make-arch-stamp make-indep-stamp \ install-indep-stamp install-arch-stamp \ check-stamp [ ! -f Makefile ] || /usr/bin/make distclean rm -f `find . -name "*~"` rm -rf debian/tmp debian/files* core debian/substvars rm -f doc/html/function.html doc/html/packages.html rm -f modules/*.so src/unix/Rscript dh_clean debian/rules build-arch *** configure *** #automake #autoconf dh_testdir R_PAPERSIZE=letter \ R_BROWSER=xdg-open \ R_GZIPCMD="gzip -n" \ PAGER=/usr/bin/pager \ PERL=/usr/bin/perl \ JAVA_HOME=/usr/lib/jvm/default-java \ R_UNZIPCMD=/usr/bin/unzip \ R_ZIPCMD=/usr/bin/zip \ R_PRINTCMD=/usr/bin/lpr \ LIBnn=lib \ AWK=/usr/bin/awk \ CC="gcc -std=gnu99" \ CXX=g++ \ F77=gfortran \ FC=gfortran \ CFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g" \ CXXFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g" \ FFLAGS="-g -O2 -fstack-protector-strong" \ FCFLAGS="-g -O2 -fstack-protector-strong" \ CPPFLAGS= \ LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro" \ FLIBS= \ rsharedir=/usr/share/R/share \ rincludedir=/usr/share/R/include \ rdocdir=/usr/share/R/doc \ ./configure --prefix=/usr \ --with-cairo \ --with-jpeglib \ --with-readline \ --with-tcltk \ --with-system-bzlib \ --with-system-pcre \ --with-system-zlib \ --mandir=/usr/share/man \ --infodir=/usr/share/info \ --datadir=/usr/share/R/share \ --includedir=/usr/share/R/include \ --with-blas \ --with-lapack \ --enable-R-profiling \ --enable-R-shlib \ --enable-memory-profiling \ --without-recommended-packages \ --build arm-linux-gnueabihf checking build system type... arm-unknown-linux-gnueabihf checking host system type... arm-unknown-linux-gnueabihf loading site script './config.site' loading build-specific script './config.site' checking for pwd... /bin/pwd checking whether builddir is srcdir... yes checking for working aclocal... missing checking for working autoconf... missing checking for working automake... missing checking for working autoheader... missing checking for gawk... /usr/bin/awk checking whether ln -s works... yes checking for bison... bison -y checking for ar... ar checking for a BSD-compatible install... /usr/bin/install -c checking for sed... /bin/sed 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-L/usr/lib/gcc/arm-linux-gnueabihf/5 -L/usr/lib/gcc/arm-linux-gnueabihf/5/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/5/../../../../lib -L/lib/arm-linux-gnueabihf -L/lib/../lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/../lib -L/usr/lib/gcc/arm-linux-gnueabihf/5/../../.. -lgcc_s checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking whether gfortran appends underscores to external names... yes checking whether gfortran appends extra underscores to external names... no checking whether mixed C/Fortran code can be run... yes checking whether gfortran and gcc -std=gnu99 agree on int and double... yes checking whether gfortran and gcc -std=gnu99 agree on double complex... yes checking for gfortran option to support OpenMP... -fopenmp checking whether g++ accepts -M for generating dependencies... yes checking for g++ option to support OpenMP... -fopenmp 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(cached) no checking whether included gettext is requested... no checking for GNU gettext in libc... yes checking whether to use NLS... yes checking where the gettext function comes from... libc Finished configuring src/extra/intl directory using as R_SHELL for scripts ... /bin/bash configure: creating ./config.status config.status: creating Makeconf config.status: creating Makefile config.status: creating doc/Makefile config.status: creating doc/html/Makefile config.status: creating doc/manual/Makefile config.status: creating etc/Makefile config.status: creating etc/Makeconf config.status: creating etc/Renviron config.status: creating etc/javaconf config.status: creating etc/ldpaths config.status: creating m4/Makefile config.status: creating po/Makefile config.status: creating share/Makefile config.status: creating src/Makefile config.status: creating src/appl/Makefile config.status: creating src/extra/Makefile config.status: creating src/extra/blas/Makefile config.status: creating 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config.status: creating src/modules/X11/Makefile config.status: creating src/modules/internet/Makefile config.status: creating src/modules/lapack/Makefile config.status: creating src/nmath/Makefile config.status: creating src/nmath/standalone/Makefile config.status: creating src/scripts/Makefile config.status: creating src/scripts/R.sh config.status: creating src/scripts/Rcmd config.status: creating src/scripts/f77_f2c config.status: creating src/scripts/javareconf config.status: creating src/scripts/mkinstalldirs config.status: creating src/scripts/pager config.status: creating src/scripts/rtags config.status: creating src/unix/Makefile config.status: creating tests/Makefile config.status: creating tests/Embedding/Makefile config.status: creating tests/Examples/Makefile config.status: creating tools/Makefile config.status: creating src/include/config.h config.status: executing libtool commands config.status: executing stamp-h commands R is now configured for arm-unknown-linux-gnueabihf Source directory: . Installation directory: /usr C compiler: gcc -std=gnu99 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g Fortran 77 compiler: gfortran -g -O2 -fstack-protector-strong C++ compiler: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g C++ 11 compiler: g++ -std=c++11 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g Fortran 90/95 compiler: gfortran -g -O2 -fstack-protector-strong Obj-C compiler: Interfaces supported: X11, tcltk External libraries: readline, BLAS(generic), LAPACK(generic), zlib, bzlib, lzma, PCRE, curl Additional capabilities: PNG, JPEG, TIFF, NLS, cairo Options enabled: shared R library, R profiling, memory profiling Capabilities skipped: ICU Options not enabled: shared BLAS Recommended packages: no touch configure-stamp *** make-arch *** /usr/bin/make CFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g" \ CXXFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g" \ FFLAGS="-g -O2 -fstack-protector-strong" \ FCFLAGS="-g -O2 -fstack-protector-strong" \ CC="gcc -std=gnu99" \ CXX=g++ \ F77=gfortran \ LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro" \ PKG_BUILT_STAMP="""" \ R_GZIPCMD="gzip -n" \ R make[1]: Entering directory '/«PKGBUILDDIR»' make[2]: Entering directory '/«PKGBUILDDIR»/m4' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/«PKGBUILDDIR»/m4' make[2]: Entering directory '/«PKGBUILDDIR»/tools' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/«PKGBUILDDIR»/tools' make[2]: Entering directory '/«PKGBUILDDIR»/doc' make[3]: Entering directory '/«PKGBUILDDIR»/doc/html' make[3]: Leaving directory '/«PKGBUILDDIR»/doc/html' make[3]: Entering directory '/«PKGBUILDDIR»/doc/manual' make[3]: Nothing to be done for 'R'. make[3]: Leaving directory '/«PKGBUILDDIR»/doc/manual' make[2]: Leaving directory '/«PKGBUILDDIR»/doc' make[2]: Entering directory '/«PKGBUILDDIR»/etc' make[2]: Leaving directory '/«PKGBUILDDIR»/etc' make[2]: Entering directory '/«PKGBUILDDIR»/share' make[2]: Leaving directory '/«PKGBUILDDIR»/share' make[2]: Entering directory '/«PKGBUILDDIR»/src' make[3]: Entering directory '/«PKGBUILDDIR»/src/scripts' creating src/scripts/R.fe make[4]: Entering directory '/«PKGBUILDDIR»/src/scripts' mkdir -p -- ../../bin make[4]: Leaving directory '/«PKGBUILDDIR»/src/scripts' make[3]: Leaving directory '/«PKGBUILDDIR»/src/scripts' make[3]: Entering directory '/«PKGBUILDDIR»/src/include' mkdir -p -- ../../include make[4]: Entering directory '/«PKGBUILDDIR»/src/include/R_ext' mkdir -p -- ../../../include/R_ext make[4]: Leaving directory '/«PKGBUILDDIR»/src/include/R_ext' make[3]: Leaving directory '/«PKGBUILDDIR»/src/include' make[3]: Entering directory '/«PKGBUILDDIR»/src/extra' make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/tre' make[5]: Entering directory '/«PKGBUILDDIR»/src/extra/tre' making regcomp.d from regcomp.c making regerror.d from regerror.c making regexec.d from regexec.c making tre-ast.d from tre-ast.c making tre-compile.d from tre-compile.c making tre-match-approx.d from tre-match-approx.c making tre-match-backtrack.d from tre-match-backtrack.c making tre-match-parallel.d from tre-match-parallel.c making tre-mem.d from tre-mem.c making tre-parse.d from tre-parse.c making tre-stack.d from tre-stack.c making xmalloc.d from xmalloc.c make[5]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre' make[5]: Entering directory '/«PKGBUILDDIR»/src/extra/tre' gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c regcomp.c -o regcomp.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c regerror.c -o regerror.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c regexec.c -o regexec.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-ast.c -o tre-ast.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-compile.c -o tre-compile.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-match-approx.c -o tre-match-approx.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-match-backtrack.c -o tre-match-backtrack.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-match-parallel.c -o tre-match-parallel.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-mem.c -o tre-mem.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-parse.c -o tre-parse.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-stack.c -o tre-stack.o gcc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c xmalloc.c -o xmalloc.o rm -f libtre.a ar cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o xmalloc.o ranlib libtre.a make[5]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre' make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre' make[3]: Leaving directory '/«PKGBUILDDIR»/src/extra' make[3]: Entering directory '/«PKGBUILDDIR»/src/appl' making integrate.d from integrate.c making interv.d from interv.c making maxcol.d from maxcol.c making optim.d from optim.c making pretty.d from pretty.c making uncmin.d from uncmin.c make[4]: Entering directory '/«PKGBUILDDIR»/src/appl' gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c integrate.c -o integrate.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c interv.c -o interv.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c maxcol.c -o maxcol.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c optim.c -o optim.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pretty.c -o pretty.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c uncmin.c -o uncmin.o gfortran -fopenmp -fpic -g -O2 -fstack-protector-strong -c dchdc.f -o dchdc.o gfortran -fopenmp -fpic -g -O2 -fstack-protector-strong -c dpbfa.f -o dpbfa.o gfortran -fopenmp -fpic -g -O2 -fstack-protector-strong -c dpbsl.f -o dpbsl.o gfortran -fopenmp -fpic -g -O2 -fstack-protector-strong -c dpoco.f -o dpoco.o gfortran -fopenmp -fpic -g -O2 -fstack-protector-strong -c dpodi.f -o dpodi.o gfortran -fopenmp -fpic -g -O2 -fstack-protector-strong -c dpofa.f -o dpofa.o gfortran -fopenmp -fpic -g -O2 -fstack-protector-strong -c dposl.f -o dposl.o gfortran -fopenmp -fpic -g -O2 -fstack-protector-strong -c dqrdc.f -o dqrdc.o gfortran -fopenmp -fpic -g -O2 -fstack-protector-strong -c dqrdc2.f -o dqrdc2.o gfortran -fopenmp -fpic -g -O2 -fstack-protector-strong -c dqrls.f -o dqrls.o gfortran -fopenmp -fpic -g -O2 -fstack-protector-strong -c dqrsl.f -o dqrsl.o gfortran -fopenmp -fpic -g -O2 -fstack-protector-strong -c dqrutl.f -o dqrutl.o gfortran -fopenmp -fpic -g -O2 -fstack-protector-strong -c dsvdc.f -o dsvdc.o gfortran -fopenmp -fpic -g -O2 -fstack-protector-strong -c dtrco.f -o dtrco.o gfortran -fopenmp -fpic -g -O2 -fstack-protector-strong -c dtrsl.f -o dtrsl.o rm -f libappl.a ar cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o ranlib libappl.a make[4]: Leaving directory '/«PKGBUILDDIR»/src/appl' make[3]: Leaving directory '/«PKGBUILDDIR»/src/appl' make[3]: Entering directory '/«PKGBUILDDIR»/src/nmath' making mlutils.d from mlutils.c making d1mach.d from d1mach.c making i1mach.d from i1mach.c making fmax2.d from fmax2.c making fmin2.d from fmin2.c making fprec.d from fprec.c making fround.d from fround.c making ftrunc.d from ftrunc.c making sign.d from sign.c making fsign.d from fsign.c making imax2.d from imax2.c making imin2.d from imin2.c making chebyshev.d from chebyshev.c making log1p.d from log1p.c making expm1.d from expm1.c making lgammacor.d from lgammacor.c making gammalims.d from gammalims.c making stirlerr.d from stirlerr.c making bd0.d from bd0.c making gamma.d from gamma.c making lgamma.d from lgamma.c making gamma_cody.d from gamma_cody.c making beta.d from beta.c making lbeta.d from lbeta.c making polygamma.d from polygamma.c making cospi.d from cospi.c making bessel_i.d from bessel_i.c making bessel_j.d from bessel_j.c making bessel_k.d from bessel_k.c making bessel_y.d from bessel_y.c making choose.d from choose.c making snorm.d from snorm.c making sexp.d from sexp.c making dgamma.d from dgamma.c making pgamma.d from pgamma.c making qgamma.d from qgamma.c making rgamma.d from rgamma.c making dbeta.d from dbeta.c making pbeta.d from pbeta.c making qbeta.d from qbeta.c making rbeta.d from rbeta.c making dunif.d from dunif.c making punif.d from punif.c making qunif.d from qunif.c making runif.d from runif.c making dnorm.d from dnorm.c making pnorm.d from pnorm.c making qnorm.d from qnorm.c making rnorm.d from rnorm.c making dlnorm.d from dlnorm.c making plnorm.d from plnorm.c making qlnorm.d from qlnorm.c making rlnorm.d from rlnorm.c making df.d from df.c making pf.d from pf.c making qf.d from qf.c making rf.d from rf.c making dnf.d from dnf.c making dt.d from dt.c making pt.d from pt.c making qt.d from qt.c making rt.d from rt.c making dnt.d from dnt.c making dchisq.d from dchisq.c making pchisq.d from pchisq.c making qchisq.d from qchisq.c making rchisq.d from rchisq.c making rnchisq.d from rnchisq.c making dbinom.d from dbinom.c making pbinom.d from pbinom.c making qbinom.d from qbinom.c making rbinom.d from rbinom.c making rmultinom.d from rmultinom.c making dcauchy.d from dcauchy.c making pcauchy.d from pcauchy.c making qcauchy.d from qcauchy.c making rcauchy.d from rcauchy.c making dexp.d from dexp.c making pexp.d from pexp.c making qexp.d from qexp.c making rexp.d from rexp.c making dgeom.d from dgeom.c making pgeom.d from pgeom.c making qgeom.d from qgeom.c making rgeom.d from rgeom.c making dhyper.d from dhyper.c making phyper.d from phyper.c making qhyper.d from qhyper.c making rhyper.d from rhyper.c making dnbinom.d from dnbinom.c making pnbinom.d from pnbinom.c making qnbinom.d from qnbinom.c making rnbinom.d from rnbinom.c making dpois.d from dpois.c making ppois.d from ppois.c making qpois.d from qpois.c making rpois.d from rpois.c making dweibull.d from dweibull.c making pweibull.d from pweibull.c making qweibull.d from qweibull.c making rweibull.d from rweibull.c making dlogis.d from dlogis.c making plogis.d from plogis.c making qlogis.d from qlogis.c making rlogis.d from rlogis.c making dnchisq.d from dnchisq.c making pnchisq.d from pnchisq.c making qnchisq.d from qnchisq.c making dnbeta.d from dnbeta.c making pnbeta.d from pnbeta.c making qnbeta.d from qnbeta.c making pnf.d from pnf.c making pnt.d from pnt.c making qnf.d from qnf.c making qnt.d from qnt.c making ptukey.d from ptukey.c making qtukey.d from qtukey.c making toms708.d from toms708.c making wilcox.d from wilcox.c making signrank.d from signrank.c make[4]: Entering directory '/«PKGBUILDDIR»/src/nmath' gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mlutils.c -o mlutils.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c d1mach.c -o d1mach.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c i1mach.c -o i1mach.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fmax2.c -o fmax2.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fmin2.c -o fmin2.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fprec.c -o fprec.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fround.c -o fround.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ftrunc.c -o ftrunc.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sign.c -o sign.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fsign.c -o fsign.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c imax2.c -o imax2.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c imin2.c -o imin2.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c chebyshev.c -o chebyshev.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c log1p.c -o log1p.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c expm1.c -o expm1.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lgammacor.c -o lgammacor.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gammalims.c -o gammalims.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stirlerr.c -o stirlerr.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bd0.c -o bd0.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gamma.c -o gamma.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lgamma.c -o lgamma.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gamma_cody.c -o gamma_cody.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c beta.c -o beta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lbeta.c -o lbeta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c polygamma.c -o polygamma.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cospi.c -o cospi.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bessel_i.c -o bessel_i.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bessel_j.c -o bessel_j.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bessel_k.c -o bessel_k.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bessel_y.c -o bessel_y.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c choose.c -o choose.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c snorm.c -o snorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sexp.c -o sexp.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dgamma.c -o dgamma.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pgamma.c -o pgamma.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qgamma.c -o qgamma.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rgamma.c -o rgamma.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dbeta.c -o dbeta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pbeta.c -o pbeta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qbeta.c -o qbeta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rbeta.c -o rbeta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dunif.c -o dunif.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c punif.c -o punif.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qunif.c -o qunif.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c runif.c -o runif.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dnorm.c -o dnorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pnorm.c -o pnorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qnorm.c -o qnorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rnorm.c -o rnorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dlnorm.c -o dlnorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c plnorm.c -o plnorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qlnorm.c -o qlnorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rlnorm.c -o rlnorm.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c df.c -o df.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pf.c -o pf.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qf.c -o qf.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rf.c -o rf.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dnf.c -o dnf.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dt.c -o dt.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pt.c -o pt.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qt.c -o qt.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rt.c -o rt.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dnt.c -o dnt.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dchisq.c -o dchisq.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pchisq.c -o pchisq.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qchisq.c -o qchisq.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rchisq.c -o rchisq.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rnchisq.c -o rnchisq.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dbinom.c -o dbinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pbinom.c -o pbinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qbinom.c -o qbinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rbinom.c -o rbinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rmultinom.c -o rmultinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dcauchy.c -o dcauchy.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pcauchy.c -o pcauchy.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qcauchy.c -o qcauchy.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rcauchy.c -o rcauchy.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dexp.c -o dexp.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pexp.c -o pexp.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qexp.c -o qexp.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rexp.c -o rexp.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dgeom.c -o dgeom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pgeom.c -o pgeom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qgeom.c -o qgeom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rgeom.c -o rgeom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dhyper.c -o dhyper.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c phyper.c -o phyper.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qhyper.c -o qhyper.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rhyper.c -o rhyper.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dnbinom.c -o dnbinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pnbinom.c -o pnbinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qnbinom.c -o qnbinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rnbinom.c -o rnbinom.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dpois.c -o dpois.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ppois.c -o ppois.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qpois.c -o qpois.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rpois.c -o rpois.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dweibull.c -o dweibull.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pweibull.c -o pweibull.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qweibull.c -o qweibull.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rweibull.c -o rweibull.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dlogis.c -o dlogis.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c plogis.c -o plogis.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qlogis.c -o qlogis.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rlogis.c -o rlogis.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dnchisq.c -o dnchisq.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pnchisq.c -o pnchisq.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qnchisq.c -o qnchisq.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dnbeta.c -o dnbeta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pnbeta.c -o pnbeta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qnbeta.c -o qnbeta.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pnf.c -o pnf.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pnt.c -o pnt.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qnf.c -o qnf.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qnt.c -o qnt.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ptukey.c -o ptukey.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qtukey.c -o qtukey.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c toms708.c -o toms708.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c wilcox.c -o wilcox.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c signrank.c -o signrank.o rm -rf libnmath.a ar cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o ranlib libnmath.a make[4]: Leaving directory '/«PKGBUILDDIR»/src/nmath' make[3]: Leaving directory '/«PKGBUILDDIR»/src/nmath' make[3]: Entering directory '/«PKGBUILDDIR»/src/unix' config.status: creating src/unix/Makefile making Rembedded.d from Rembedded.c making dynload.d from dynload.c making system.d from system.c making sys-unix.d from sys-unix.c making sys-std.d from sys-std.c making X11.d from X11.c make[4]: Entering directory '/«PKGBUILDDIR»/src/unix' gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rembedded.c -o Rembedded.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dynload.c -o dynload.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c system.c -o system.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sys-unix.c -o sys-unix.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sys-std.c -o sys-std.o gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c X11.c -o X11.o rm -rf libunix.a ar cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o ranlib libunix.a make[4]: Leaving directory '/«PKGBUILDDIR»/src/unix' make[4]: Entering directory '/«PKGBUILDDIR»/src/unix' gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wl,-Bsymbolic-functions -Wl,-z,relro -DR_HOME='"/«PKGBUILDDIR»"' \ -o Rscript ./Rscript.c make[4]: Leaving directory '/«PKGBUILDDIR»/src/unix' make[3]: Leaving directory '/«PKGBUILDDIR»/src/unix' make[3]: Entering directory '/«PKGBUILDDIR»/src/main' config.status: creating src/main/Makefile making CommandLineArgs.d from CommandLineArgs.c making Rdynload.d from Rdynload.c making Renviron.d from Renviron.c making RNG.d from RNG.c making agrep.d from agrep.c making apply.d from apply.c making arithmetic.d from arithmetic.c making array.d from array.c making attrib.d from attrib.c making bind.d from bind.c making builtin.d from builtin.c making character.d from character.c making coerce.d from coerce.c making colors.d from colors.c making complex.d from complex.c making connections.d from connections.c making context.d from context.c making cum.d from cum.c making dcf.d from dcf.c making datetime.d from datetime.c making debug.d from debug.c making deparse.d from deparse.c making devices.d from devices.c making dotcode.d from dotcode.c making dounzip.d from dounzip.c making dstruct.d from dstruct.c making duplicate.d from duplicate.c making edit.d from edit.c making engine.d from engine.c making envir.d from envir.c making errors.d from errors.c making eval.d from eval.c making format.d from format.c making gevents.d from gevents.c making gram.d from gram.c making gram-ex.d from gram-ex.c making graphics.d from graphics.c making grep.d from grep.c making identical.d from identical.c making inlined.d from inlined.c making inspect.d from inspect.c making internet.d from internet.c making iosupport.d from iosupport.c making lapack.d from lapack.c making list.d from list.c making localecharset.d from localecharset.c making logic.d from logic.c making main.d from main.c making mapply.d from mapply.c making match.d from match.c making memory.d from memory.c making names.d from names.c making objects.d from objects.c making options.d from options.c making paste.d from paste.c making platform.d from platform.c making plot.d from plot.c making plot3d.d from plot3d.c making plotmath.d from plotmath.c making print.d from print.c making printarray.d from printarray.c making printvector.d from printvector.c making printutils.d from printutils.c making qsort.d from qsort.c making random.d from random.c making raw.d from raw.c making registration.d from registration.c making relop.d from relop.c making rlocale.d from rlocale.c making saveload.d from saveload.c making scan.d from scan.c making seq.d from seq.c making serialize.d from serialize.c making sort.d from sort.c making source.d from source.c making split.d from split.c making sprintf.d from sprintf.c making startup.d from startup.c making subassign.d from subassign.c making subscript.d from subscript.c making subset.d from subset.c making summary.d from summary.c making sysutils.d from sysutils.c making times.d from times.c making unique.d from unique.c making util.d from util.c making version.d from version.c making g_alab_her.d from g_alab_her.c making g_cntrlify.d from g_cntrlify.c making g_fontdb.d from g_fontdb.c making g_her_glyph.d from g_her_glyph.c making Rmain.d from Rmain.c making alloca.d from alloca.c making mkdtemp.d from mkdtemp.c making strdup.d from strdup.c making strncasecmp.d from strncasecmp.c make[4]: Entering directory '/«PKGBUILDDIR»/src/main' gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c CommandLineArgs.c -o CommandLineArgs.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rdynload.c -o Rdynload.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Renviron.c -o Renviron.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RNG.c -o RNG.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c agrep.c -o agrep.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c apply.c -o apply.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c arithmetic.c -o arithmetic.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c array.c -o array.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c attrib.c -o attrib.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bind.c -o bind.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c builtin.c -o builtin.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c character.c -o character.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c coerce.c -o coerce.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c colors.c -o colors.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c complex.c -o complex.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c connections.c -o connections.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c context.c -o context.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cum.c -o cum.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dcf.c -o dcf.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c datetime.c -o datetime.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c debug.c -o debug.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c deparse.c -o deparse.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c devices.c -o devices.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dotcode.c -o dotcode.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dounzip.c -o dounzip.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dstruct.c -o dstruct.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c duplicate.c -o duplicate.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c edit.c -o edit.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c engine.c -o engine.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c envir.c -o envir.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c errors.c -o errors.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c eval.c -o eval.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c format.c -o format.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gevents.c -o gevents.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gram.c -o gram.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gram-ex.c -o gram-ex.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c graphics.c -o graphics.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c grep.c -o grep.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c identical.c -o identical.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c inlined.c -o inlined.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c inspect.c -o inspect.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c internet.c -o internet.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c iosupport.c -o iosupport.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lapack.c -o lapack.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c list.c -o list.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c localecharset.c -o localecharset.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c logic.c -o logic.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c main.c -o main.o main.c: In function 'dummy_ii': main.c:1606:12: warning: function returns address of local variable [-Wreturn-local-addr] return (uintptr_t) ⅈ ^ gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mapply.c -o mapply.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match.c -o match.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c memory.c -o memory.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c names.c -o names.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c objects.c -o objects.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c options.c -o options.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c paste.c -o paste.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c platform.c -o platform.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c plot.c -o plot.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c plot3d.c -o plot3d.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c plotmath.c -o plotmath.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c print.c -o print.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c printarray.c -o printarray.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c printvector.c -o printvector.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c printutils.c -o printutils.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qsort.c -o qsort.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c random.c -o random.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c raw.c -o raw.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c registration.c -o registration.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c relop.c -o relop.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rlocale.c -o rlocale.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c saveload.c -o saveload.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scan.c -o scan.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c seq.c -o seq.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c serialize.c -o serialize.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sort.c -o sort.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c source.c -o source.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c split.c -o split.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sprintf.c -o sprintf.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c startup.c -o startup.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c subassign.c -o subassign.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c subscript.c -o subscript.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c subset.c -o subset.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c summary.c -o summary.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sysutils.c -o sysutils.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c times.c -o times.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unique.c -o unique.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c util.c -o util.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c version.c -o version.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c g_alab_her.c -o g_alab_her.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c g_cntrlify.c -o g_cntrlify.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c g_fontdb.c -o g_fontdb.o gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c g_her_glyph.c -o g_her_glyph.o gfortran -fopenmp -fpic -g -O2 -fstack-protector-strong -c xxxpr.f -o xxxpr.o gcc -std=gnu99 -shared -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o names.o objects.o options.o paste.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/tre/libtre.a -lblas -lgfortran -lm -lreadline -lpcre -llzma -lbz2 -lz -lrt -ldl -lm make[5]: Entering directory '/«PKGBUILDDIR»/src/main' mkdir -p -- /«PKGBUILDDIR»/bin/exec mkdir -p -- /«PKGBUILDDIR»/lib make[5]: Leaving directory '/«PKGBUILDDIR»/src/main' make[4]: Leaving directory '/«PKGBUILDDIR»/src/main' make[4]: Entering directory '/«PKGBUILDDIR»/src/main' gcc -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rmain.c -o Rmain.o gcc -std=gnu99 -Wl,--export-dynamic -fopenmp -L../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o R.bin Rmain.o -lR make[5]: Entering directory '/«PKGBUILDDIR»/src/main' make[5]: Leaving directory '/«PKGBUILDDIR»/src/main' make[4]: Leaving directory '/«PKGBUILDDIR»/src/main' make[3]: Leaving directory '/«PKGBUILDDIR»/src/main' make[3]: Entering directory '/«PKGBUILDDIR»/src/modules' make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/internet' making Rhttpd.d from Rhttpd.c making Rsock.d from Rsock.c making internet.d from internet.c making libcurl.d from libcurl.c making nanoftp.d from nanoftp.c making nanohttp.d from nanohttp.c making sock.d from sock.c making sockconn.d from sockconn.c make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/internet' gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c Rhttpd.c -o Rhttpd.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c Rsock.c -o Rsock.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c internet.c -o internet.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c libcurl.c -o libcurl.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c nanoftp.c -o nanoftp.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c nanohttp.c -o nanohttp.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c sock.c -o sock.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c sockconn.c -o sockconn.o gcc -std=gnu99 -shared -L../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o internet.so Rhttpd.o Rsock.o internet.o libcurl.o nanoftp.o nanohttp.o sock.o sockconn.o -L/usr/lib/arm-linux-gnueabihf -lcurl -lR make[6]: Entering directory '/«PKGBUILDDIR»/src/modules/internet' mkdir -p -- /«PKGBUILDDIR»/modules make[6]: Leaving directory '/«PKGBUILDDIR»/src/modules/internet' make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/internet' make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/internet' make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/lapack' making Lapack.d from Lapack.c make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/lapack' gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Lapack.c -o Lapack.o gcc -std=gnu99 -shared -L../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o lapack.so Lapack.o -lR -llapack -lblas -lgfortran -lm make[6]: Entering directory '/«PKGBUILDDIR»/src/modules/lapack' make[6]: Leaving directory '/«PKGBUILDDIR»/src/modules/lapack' make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/lapack' make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/lapack' make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/X11' making devX11.d from devX11.c making rotated.d from rotated.c making rbitmap.d from rbitmap.c make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/X11' gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c devX11.c -o devX11.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rotated.c -o rotated.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rbitmap.c -o rbitmap.o gcc -std=gnu99 -shared -L../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o R_X11.so devX11.o rotated.o rbitmap.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng12 -lz -lcairo -lX11 -lXext -lX11 -lXt -ltiff -ljpeg -lpng -lz -lR -lm gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dataentry.c -o dataentry.o gcc -std=gnu99 -shared -L../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o R_de.so dataentry.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng12 -lz -lcairo -lX11 -lXext -lX11 -lXt -lR -lm make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11' make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/X11' make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11' make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11' make[3]: Leaving directory '/«PKGBUILDDIR»/src/modules' make[3]: Entering directory '/«PKGBUILDDIR»/src/library' mkdir -p -- ../../library make[4]: Entering directory '/«PKGBUILDDIR»/src/library/profile' building system startup profile mkdir -p -- ../../../library/base/R make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/profile' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/translations' building package 'translations' mkdir -p -- ../../../library/translations make[5]: Entering directory '/«PKGBUILDDIR»/src/library/translations' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/translations' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/translations' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/base' building package 'base' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/base' mkdir -p -- ../../../library/base/demo make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/base' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/base' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/tools' building package 'tools' mkdir -p -- ../../../library/tools make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tools' mkdir -p -- ../../../library/tools/R make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tools' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tools' make[6]: Entering directory '/«PKGBUILDDIR»/src/library/tools/src' making text.d from text.c making init.d from init.c making Rmd5.d from Rmd5.c making md5.d from md5.c making signals.d from signals.c making install.d from install.c making getfmts.d from getfmts.c making http.d from http.c making gramLatex.d from gramLatex.c making gramRd.d from gramRd.c gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c text.c -o text.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rmd5.c -o Rmd5.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c md5.c -o md5.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c signals.c -o signals.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c install.c -o install.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c getfmts.c -o getfmts.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c http.c -o http.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gramLatex.c -o gramLatex.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gramRd.c -o gramRd.o gcc -std=gnu99 -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o -L../../../../lib -lR make[7]: Entering directory '/«PKGBUILDDIR»/src/library/tools/src' mkdir -p -- ../../../../library/tools/libs make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/tools/src' make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/tools/src' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tools' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tools' installing 'sysdata.rda' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tools' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/tools' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/compiler' building package 'compiler' mkdir -p -- ../../../library/compiler make[5]: Entering directory '/«PKGBUILDDIR»/src/library/compiler' mkdir -p -- ../../../library/compiler/R make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/compiler' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/compiler' byte-compiling package 'compiler' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/compiler' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/compiler' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/base' byte-compiling package 'base' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/base' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/tools' byte-compiling package 'tools' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/tools' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/utils' building package 'utils' mkdir -p -- ../../../library/utils mkdir -p -- ../../../library/utils/doc make[5]: Entering directory '/«PKGBUILDDIR»/src/library/utils' mkdir -p -- ../../../library/utils/R mkdir -p -- ../../../library/utils/Sweave mkdir -p -- ../../../library/utils/misc make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/utils' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/utils' make[6]: Entering directory '/«PKGBUILDDIR»/src/library/utils/src' making init.d from init.c making io.d from io.c making size.d from size.c making sock.d from sock.c making stubs.d from stubs.c making utils.d from utils.c gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c io.c -o io.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c size.c -o size.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sock.c -o sock.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stubs.c -o stubs.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o gcc -std=gnu99 -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o utils.so init.o io.o size.o sock.o stubs.o utils.o -L../../../../lib -lR make[7]: Entering directory '/«PKGBUILDDIR»/src/library/utils/src' mkdir -p -- ../../../../library/utils/libs make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/utils/src' make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/utils/src' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/utils' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/utils' byte-compiling package 'utils' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/utils' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/utils' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices' building package 'grDevices' mkdir -p -- ../../../library/grDevices make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices' mkdir -p -- ../../../library/grDevices/R mkdir -p -- ../../../library/grDevices/afm mkdir -p -- ../../../library/grDevices/enc mkdir -p -- ../../../library/grDevices/icc make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices' make[6]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src' making axis_scales.d from axis_scales.c making chull.d from chull.c making devices.d from devices.c making init.d from init.c making stubs.d from stubs.c making colors.d from colors.c making devCairo.d from devCairo.c making devPicTeX.d from devPicTeX.c making devPS.d from devPS.c making devQuartz.d from devQuartz.c gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c axis_scales.c -o axis_scales.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c chull.c -o chull.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c devices.c -o devices.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stubs.c -o stubs.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c colors.c -o colors.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c devCairo.c -o devCairo.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c devPicTeX.c -o devPicTeX.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c devPS.c -o devPS.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c devQuartz.c -o devQuartz.o gcc -std=gnu99 -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o devCairo.o devPicTeX.o devPS.o devQuartz.o -lz -L../../../../lib -lR make[7]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src' mkdir -p -- ../../../../library/grDevices/libs make[8]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo' making cairoBM.d from cairoBM.c make[9]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo' make[10]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo' gcc -std=gnu99 -I. -I../../../../../src/include -I../../../../../src/include -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../../../src/modules/X11 -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cairoBM.c -o cairoBM.o gcc -std=gnu99 -shared -L../../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng12 -lz -lcairo -ltiff -ljpeg -lpng -lz -L../../../../../lib -lR -lm make[10]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo' make[9]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo' make[8]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo' make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src' make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices' byte-compiling package 'grDevices' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/graphics' building package 'graphics' mkdir -p -- ../../../library/graphics make[5]: Entering directory '/«PKGBUILDDIR»/src/library/graphics' mkdir -p -- ../../../library/graphics/R make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/graphics' make[6]: Entering directory '/«PKGBUILDDIR»/src/library/graphics/src' making init.d from init.c making base.d from base.c making graphics.d from graphics.c making par.d from par.c making plot.d from plot.c making plot3d.d from plot3d.c making stem.d from stem.c gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c base.c -o base.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c graphics.c -o graphics.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c par.c -o par.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c plot.c -o plot.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c plot3d.c -o plot3d.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stem.c -o stem.o gcc -std=gnu99 -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR make[7]: Entering directory '/«PKGBUILDDIR»/src/library/graphics/src' mkdir -p -- ../../../../library/graphics/libs make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics/src' make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics/src' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/graphics' byte-compiling package 'graphics' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/stats' building package 'stats' mkdir -p -- ../../../library/stats make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats' mkdir -p -- ../../../library/stats/R make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats' make[6]: Entering directory '/«PKGBUILDDIR»/src/library/stats/src' making init.d from init.c making kmeans.d from kmeans.c making ansari.d from ansari.c making bandwidths.d from bandwidths.c making chisqsim.d from chisqsim.c making d2x2xk.d from d2x2xk.c making fexact.d from fexact.c making kendall.d from kendall.c making ks.d from ks.c making line.d from line.c making smooth.d from smooth.c making prho.d from prho.c making swilk.d from swilk.c making ksmooth.d from ksmooth.c making loessc.d from loessc.c making monoSpl.d from monoSpl.c making isoreg.d from isoreg.c making Srunmed.d from Srunmed.c making dblcen.d from dblcen.c making distance.d from distance.c making hclust-utils.d from hclust-utils.c making nls.d from nls.c making rWishart.d from rWishart.c making HoltWinters.d from HoltWinters.c making PPsum.d from PPsum.c making arima.d from arima.c making burg.d from burg.c making filter.d from filter.c making mAR.d from mAR.c making pacf.d from pacf.c making starma.d from starma.c making port.d from port.c making family.d from family.c making sbart.d from sbart.c making approx.d from approx.c making loglin.d from loglin.c making lowess.d from lowess.c making massdist.d from massdist.c making splines.d from splines.c making lm.d from lm.c making complete_cases.d from complete_cases.c making cov.d from cov.c making deriv.d from deriv.c making fft.d from fft.c making fourier.d from fourier.c making model.d from model.c making optim.d from optim.c making optimize.d from optimize.c making integrate.d from integrate.c making random.d from random.c making distn.d from distn.c making zeroin.d from zeroin.c making rcont.d from rcont.c making influence.d from influence.c gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c kmeans.c -o kmeans.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ansari.c -o ansari.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bandwidths.c -o bandwidths.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c chisqsim.c -o chisqsim.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c d2x2xk.c -o d2x2xk.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fexact.c -o fexact.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c kendall.c -o kendall.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ks.c -o ks.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c line.c -o line.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c smooth.c -o smooth.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c prho.c -o prho.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c swilk.c -o swilk.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ksmooth.c -o ksmooth.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c loessc.c -o loessc.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c monoSpl.c -o monoSpl.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c isoreg.c -o isoreg.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Srunmed.c -o Srunmed.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dblcen.c -o dblcen.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c distance.c -o distance.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hclust-utils.c -o hclust-utils.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nls.c -o nls.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rWishart.c -o rWishart.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c HoltWinters.c -o HoltWinters.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c PPsum.c -o PPsum.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c arima.c -o arima.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c burg.c -o burg.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c filter.c -o filter.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mAR.c -o mAR.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pacf.c -o pacf.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c starma.c -o starma.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c port.c -o port.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c family.c -o family.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sbart.c -o sbart.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c approx.c -o approx.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c loglin.c -o loglin.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lowess.c -o lowess.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c massdist.c -o massdist.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c splines.c -o splines.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lm.c -o lm.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c complete_cases.c -o complete_cases.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cov.c -o cov.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c deriv.c -o deriv.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fft.c -o fft.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fourier.c -o fourier.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c model.c -o model.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c optim.c -o optim.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c optimize.c -o optimize.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c integrate.c -o integrate.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c random.c -o random.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c distn.c -o distn.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c zeroin.c -o zeroin.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rcont.c -o rcont.o gcc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c influence.c -o influence.o gfortran -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -c bsplvd.f -o bsplvd.o gfortran -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -c bvalue.f -o bvalue.o gfortran -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -c bvalus.f -o bvalus.o gfortran -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -c loessf.f -o loessf.o gfortran -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -c ppr.f -o ppr.o gfortran -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -c qsbart.f -o qsbart.o gfortran -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -c sgram.f -o sgram.o gfortran -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -c sinerp.f -o sinerp.o gfortran -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -c sslvrg.f -o sslvrg.o gfortran -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -c stxwx.f -o stxwx.o gfortran -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -c hclust.f -o hclust.o gfortran -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -c kmns.f -o kmns.o gfortran -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -c eureka.f -o eureka.o gfortran -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -c stl.f -o stl.o gfortran -fpic -g -O2 -fstack-protector-strong -ffloat-store -c portsrc.f -o portsrc.o gfortran -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -c lminfl.f -o lminfl.o gcc -std=gnu99 -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -llapack -lblas -lgfortran -lm -L../../../../lib -lR make[7]: Entering directory '/«PKGBUILDDIR»/src/library/stats/src' mkdir -p -- ../../../../library/stats/libs make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/stats/src' make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/stats/src' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats' byte-compiling package 'stats' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/stats' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/datasets' building package 'datasets' mkdir -p -- ../../../library/datasets make[5]: Entering directory '/«PKGBUILDDIR»/src/library/datasets' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/datasets' mkdir -p -- ../../../library/datasets/data make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/datasets' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/methods' building package 'methods' mkdir -p -- ../../../library/methods make[5]: Entering directory '/«PKGBUILDDIR»/src/library/methods' mkdir -p -- ../../../library/methods/R make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/methods' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/methods' make[6]: Entering directory '/«PKGBUILDDIR»/src/library/methods/src' making do_substitute_direct.d from do_substitute_direct.c making init.d from init.c making methods_list_dispatch.d from methods_list_dispatch.c making slot.d from slot.c making class_support.d from class_support.c making tests.d from tests.c making utils.d from utils.c gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c do_substitute_direct.c -o do_substitute_direct.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c methods_list_dispatch.c -o methods_list_dispatch.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c slot.c -o slot.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c class_support.c -o class_support.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tests.c -o tests.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o gcc -std=gnu99 -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR make[7]: Entering directory '/«PKGBUILDDIR»/src/library/methods/src' mkdir -p -- ../../../../library/methods/libs make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/methods/src' make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/methods/src' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/methods' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/methods' byte-compiling 'methods' initializing class and method definitions ... done make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/methods' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/methods' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/grid' building package 'grid' mkdir -p -- ../../../library/grid mkdir -p -- ../../../library/grid/doc make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grid' mkdir -p -- ../../../library/grid/R make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grid' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grid' make[6]: Entering directory '/«PKGBUILDDIR»/src/library/grid/src' making gpar.d from gpar.c making grid.d from grid.c making just.d from just.c making layout.d from layout.c making matrix.d from matrix.c making register.d from register.c making state.d from state.c making unit.d from unit.c making util.d from util.c making viewport.d from viewport.c gcc -std=gnu99 -I../../../../include -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gpar.c -o gpar.o gcc -std=gnu99 -I../../../../include -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c grid.c -o grid.o gcc -std=gnu99 -I../../../../include -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c just.c -o just.o gcc -std=gnu99 -I../../../../include -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c layout.c -o layout.o gcc -std=gnu99 -I../../../../include -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c matrix.c -o matrix.o gcc -std=gnu99 -I../../../../include -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c register.c -o register.o gcc -std=gnu99 -I../../../../include -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c state.c -o state.o gcc -std=gnu99 -I../../../../include -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unit.c -o unit.o gcc -std=gnu99 -I../../../../include -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c util.c -o util.o gcc -std=gnu99 -I../../../../include -DNDEBUG -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c viewport.c -o viewport.o gcc -std=gnu99 -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o grid.so gpar.o grid.o just.o layout.o matrix.o register.o state.o unit.o util.o viewport.o -L../../../../lib -lR make[7]: Entering directory '/«PKGBUILDDIR»/src/library/grid/src' mkdir -p -- ../../../../library/grid/libs make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/grid/src' make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/grid/src' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grid' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grid' byte-compiling package 'grid' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grid' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/grid' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/splines' building package 'splines' mkdir -p -- ../../../library/splines make[5]: Entering directory '/«PKGBUILDDIR»/src/library/splines' mkdir -p -- ../../../library/splines/R make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/splines' make[6]: Entering directory '/«PKGBUILDDIR»/src/library/splines/src' making splines.d from splines.c gcc -std=gnu99 -I../../../../include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c splines.c -o splines.o gcc -std=gnu99 -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o splines.so splines.o -L../../../../lib -lR make[7]: Entering directory '/«PKGBUILDDIR»/src/library/splines/src' mkdir -p -- ../../../../library/splines/libs make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/splines/src' make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/splines/src' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/splines' byte-compiling package 'splines' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/splines' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/stats4' building package 'stats4' mkdir -p -- ../../../library/stats4 make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats4' mkdir -p -- ../../../library/stats4/R make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats4' byte-compiling package 'stats4' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk' building package 'tcltk' mkdir -p -- ../../../library/tcltk/R make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk' mkdir -p -- ../../../library/tcltk/exec make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk/src' making init.d from init.c making tcltk.d from tcltk.c making tcltk_unix.d from tcltk_unix.c gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6 -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6 -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tcltk.c -o tcltk.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6 -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tcltk_unix.c -o tcltk_unix.o gcc -std=gnu99 -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/lib/arm-linux-gnueabihf -ltcl8.6 -L/usr/lib/arm-linux-gnueabihf -ltk8.6 -lX11 -lXss -lXext -lm -L../../../../lib -lR make[6]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk/src' mkdir -p -- ../../../../library/tcltk/libs make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk/src' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk/src' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk' byte-compiling package 'tcltk' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/parallel' building package 'parallel' mkdir -p -- ../../../library/parallel mkdir -p -- ../../../library/parallel/doc make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel' mkdir -p -- ../../../library/parallel/R make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel' make[6]: Entering directory '/«PKGBUILDDIR»/src/library/parallel/src' making init.d from init.c making rngstream.d from rngstream.c making fork.d from fork.c gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rngstream.c -o rngstream.o gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fork.c -o fork.o gcc -std=gnu99 -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR make[7]: Entering directory '/«PKGBUILDDIR»/src/library/parallel/src' mkdir -p -- ../../../../library/parallel/libs make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel/src' make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel/src' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel' byte-compiling package 'parallel' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/base' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/base' installing parsed NAMESPACE files make[3]: Leaving directory '/«PKGBUILDDIR»/src/library' make[2]: Leaving directory '/«PKGBUILDDIR»/src' make[2]: Entering directory '/«PKGBUILDDIR»/tests' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/«PKGBUILDDIR»/tests' you should 'make docs' now ... make[1]: Leaving directory '/«PKGBUILDDIR»' (cd src/nmath/standalone; \ /usr/bin/make CFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT" \ CXXFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT" \ FFLAGS="-g -O2 -fstack-protector-strong -D_REENTRANT" \ CC="gcc -std=gnu99" \ CXX=g++ \ F77=gfortran \ R_GZIPCMD="gzip -n" \ libRmath_la_LDFLAGS=-Wl,-soname,libRmath.so.1 \ shared static ) make[1]: Entering directory '/«PKGBUILDDIR»/src/nmath/standalone' (cd ../../include; /usr/bin/make Rmath.h) make[2]: Entering directory '/«PKGBUILDDIR»/src/include' make[2]: 'Rmath.h' is up to date. make[2]: Leaving directory '/«PKGBUILDDIR»/src/include' Copying source files make[2]: Entering directory '/«PKGBUILDDIR»/src/nmath/standalone' making mlutils.d from mlutils.c making d1mach.d from d1mach.c making i1mach.d from i1mach.c making fmax2.d from fmax2.c making fmin2.d from fmin2.c making fprec.d from fprec.c making fround.d from fround.c making ftrunc.d from ftrunc.c making sign.d from sign.c making fsign.d from fsign.c making imax2.d from imax2.c making imin2.d from imin2.c making chebyshev.d from chebyshev.c making log1p.d from log1p.c making expm1.d from expm1.c making lgammacor.d from lgammacor.c making gammalims.d from gammalims.c making stirlerr.d from stirlerr.c making bd0.d from bd0.c making gamma.d from gamma.c making lgamma.d from lgamma.c making gamma_cody.d from gamma_cody.c making beta.d from beta.c making lbeta.d from lbeta.c making polygamma.d from polygamma.c making cospi.d from cospi.c making bessel_i.d from bessel_i.c making bessel_j.d from bessel_j.c making bessel_k.d from bessel_k.c making bessel_y.d from bessel_y.c making choose.d from choose.c making snorm.d from snorm.c making sexp.d from sexp.c making dgamma.d from dgamma.c making pgamma.d from pgamma.c making qgamma.d from qgamma.c making rgamma.d from rgamma.c making dbeta.d from dbeta.c making pbeta.d from pbeta.c making qbeta.d from qbeta.c making rbeta.d from rbeta.c making dunif.d from dunif.c making punif.d from punif.c making qunif.d from qunif.c making runif.d from runif.c making dnorm.d from dnorm.c making pnorm.d from pnorm.c making qnorm.d from qnorm.c making rnorm.d from rnorm.c making dlnorm.d from dlnorm.c making plnorm.d from plnorm.c making qlnorm.d from qlnorm.c making rlnorm.d from rlnorm.c making df.d from df.c making pf.d from pf.c making qf.d from qf.c making rf.d from rf.c making dnf.d from dnf.c making dt.d from dt.c making pt.d from pt.c making qt.d from qt.c making rt.d from rt.c making dnt.d from dnt.c making dchisq.d from dchisq.c making pchisq.d from pchisq.c making qchisq.d from qchisq.c making rchisq.d from rchisq.c making rnchisq.d from rnchisq.c making dbinom.d from dbinom.c making pbinom.d from pbinom.c making qbinom.d from qbinom.c making rbinom.d from rbinom.c making rmultinom.d from rmultinom.c making dcauchy.d from dcauchy.c making pcauchy.d from pcauchy.c making qcauchy.d from qcauchy.c making rcauchy.d from rcauchy.c making dexp.d from dexp.c making pexp.d from pexp.c making qexp.d from qexp.c making rexp.d from rexp.c making dgeom.d from dgeom.c making pgeom.d from pgeom.c making qgeom.d from qgeom.c making rgeom.d from rgeom.c making dhyper.d from dhyper.c making phyper.d from phyper.c making qhyper.d from qhyper.c making rhyper.d from rhyper.c making dnbinom.d from dnbinom.c making pnbinom.d from pnbinom.c making qnbinom.d from qnbinom.c making rnbinom.d from rnbinom.c making dpois.d from dpois.c making ppois.d from ppois.c making qpois.d from qpois.c making rpois.d from rpois.c making dweibull.d from dweibull.c making pweibull.d from pweibull.c making qweibull.d from qweibull.c making rweibull.d from rweibull.c making dlogis.d from dlogis.c making plogis.d from plogis.c making qlogis.d from qlogis.c making rlogis.d from rlogis.c making dnchisq.d from dnchisq.c making pnchisq.d from pnchisq.c making qnchisq.d from qnchisq.c making dnbeta.d from dnbeta.c making pnbeta.d from pnbeta.c making qnbeta.d from qnbeta.c making pnf.d from pnf.c making pnt.d from pnt.c making qnf.d from qnf.c making qnt.d from qnt.c making ptukey.d from ptukey.c making qtukey.d from qtukey.c making toms708.d from toms708.c making wilcox.d from wilcox.c making signrank.d from signrank.c making std_unif.d from std_unif.c make[2]: Leaving directory '/«PKGBUILDDIR»/src/nmath/standalone' make[2]: Entering directory '/«PKGBUILDDIR»/src/nmath/standalone' gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c mlutils.c -o mlutils.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c d1mach.c -o d1mach.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c i1mach.c -o i1mach.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fmax2.c -o fmax2.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fmin2.c -o fmin2.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fprec.c -o fprec.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fround.c -o fround.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ftrunc.c -o ftrunc.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c sign.c -o sign.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fsign.c -o fsign.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c imax2.c -o imax2.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c imin2.c -o imin2.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c chebyshev.c -o chebyshev.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c log1p.c -o log1p.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c expm1.c -o expm1.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lgammacor.c -o lgammacor.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gammalims.c -o gammalims.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c stirlerr.c -o stirlerr.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bd0.c -o bd0.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gamma.c -o gamma.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lgamma.c -o lgamma.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gamma_cody.c -o gamma_cody.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c beta.c -o beta.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lbeta.c -o lbeta.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c polygamma.c -o polygamma.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c cospi.c -o cospi.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_i.c -o bessel_i.lo In file included from bessel_i.c:26:0: bessel_i.c: In function 'bessel_i': bessel_i.c:77:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ ./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4' #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4) ^ bessel_i.c:77:23: note: in expansion of macro '_' MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ bessel_i.c:77:25: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ ./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4' #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4) ^ bessel_i.c:77:23: note: in expansion of macro '_' MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ bessel_i.c: In function 'bessel_i_ex': bessel_i.c:122:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ ./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4' #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4) ^ bessel_i.c:122:23: note: in expansion of macro '_' MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ bessel_i.c:122:25: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ ./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4' #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4) ^ bessel_i.c:122:23: note: in expansion of macro '_' MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_j.c -o bessel_j.lo In file included from bessel_j.c:27:0: bessel_j.c: In function 'bessel_j': bessel_j.c:79:21: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ ./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4' #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4) ^ bessel_j.c:79:19: note: in expansion of macro '_' MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ bessel_j.c:79:21: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ ./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4' #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4) ^ bessel_j.c:79:19: note: in expansion of macro '_' MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ bessel_j.c: In function 'bessel_j_ex': bessel_j.c:125:21: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ ./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4' #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4) ^ bessel_j.c:125:19: note: in expansion of macro '_' MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ bessel_j.c:125:21: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ ./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4' #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4) ^ bessel_j.c:125:19: note: in expansion of macro '_' MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_k.c -o bessel_k.lo In file included from bessel_k.c:27:0: bessel_k.c: In function 'bessel_k': bessel_k.c:71:21: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ ./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4' #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4) ^ bessel_k.c:71:19: note: in expansion of macro '_' MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ bessel_k.c:71:21: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ ./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4' #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4) ^ bessel_k.c:71:19: note: in expansion of macro '_' MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ bessel_k.c: In function 'bessel_k_ex': bessel_k.c:108:21: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ ./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4' #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4) ^ bessel_k.c:108:19: note: in expansion of macro '_' MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ bessel_k.c:108:21: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ ./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4' #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4) ^ bessel_k.c:108:19: note: in expansion of macro '_' MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_y.c -o bessel_y.lo In file included from bessel_y.c:26:0: bessel_y.c: In function 'bessel_y': bessel_y.c:86:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ ./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4' #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4) ^ bessel_y.c:86:23: note: in expansion of macro '_' MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ bessel_y.c:86:25: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ ./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4' #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4) ^ bessel_y.c:86:23: note: in expansion of macro '_' MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ bessel_y.c: In function 'bessel_y_ex': bessel_y.c:134:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ ./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4' #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4) ^ bessel_y.c:134:23: note: in expansion of macro '_' MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ bessel_y.c:134:25: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ ./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4' #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4) ^ bessel_y.c:134:23: note: in expansion of macro '_' MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c choose.c -o choose.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c snorm.c -o snorm.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c sexp.c -o sexp.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dgamma.c -o dgamma.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pgamma.c -o pgamma.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qgamma.c -o qgamma.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rgamma.c -o rgamma.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dbeta.c -o dbeta.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pbeta.c -o pbeta.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qbeta.c -o qbeta.lo In file included from qbeta.c:33:0: ../../../src/include/R_ext/Arith.h:89:0: warning: "R_FINITE" redefined # define R_FINITE(x) isfinite(x) ^ In file included from qbeta.c:31:0: ./../nmath.h:107:0: note: this is the location of the previous definition #define R_FINITE(x) R_finite(x) ^ gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rbeta.c -o rbeta.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dunif.c -o dunif.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c punif.c -o punif.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qunif.c -o qunif.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c runif.c -o runif.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnorm.c -o dnorm.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnorm.c -o pnorm.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnorm.c -o qnorm.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnorm.c -o rnorm.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dlnorm.c -o dlnorm.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c plnorm.c -o plnorm.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qlnorm.c -o qlnorm.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rlnorm.c -o rlnorm.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c df.c -o df.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pf.c -o pf.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qf.c -o qf.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rf.c -o rf.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnf.c -o dnf.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dt.c -o dt.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pt.c -o pt.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qt.c -o qt.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rt.c -o rt.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnt.c -o dnt.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dchisq.c -o dchisq.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pchisq.c -o pchisq.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qchisq.c -o qchisq.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rchisq.c -o rchisq.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnchisq.c -o rnchisq.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dbinom.c -o dbinom.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pbinom.c -o pbinom.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qbinom.c -o qbinom.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rbinom.c -o rbinom.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rmultinom.c -o rmultinom.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dcauchy.c -o dcauchy.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pcauchy.c -o pcauchy.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qcauchy.c -o qcauchy.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rcauchy.c -o rcauchy.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dexp.c -o dexp.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pexp.c -o pexp.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qexp.c -o qexp.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rexp.c -o rexp.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dgeom.c -o dgeom.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pgeom.c -o pgeom.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qgeom.c -o qgeom.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rgeom.c -o rgeom.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dhyper.c -o dhyper.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c phyper.c -o phyper.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qhyper.c -o qhyper.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rhyper.c -o rhyper.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnbinom.c -o dnbinom.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnbinom.c -o pnbinom.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnbinom.c -o qnbinom.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnbinom.c -o rnbinom.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dpois.c -o dpois.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ppois.c -o ppois.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qpois.c -o qpois.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rpois.c -o rpois.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dweibull.c -o dweibull.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pweibull.c -o pweibull.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qweibull.c -o qweibull.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rweibull.c -o rweibull.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dlogis.c -o dlogis.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c plogis.c -o plogis.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qlogis.c -o qlogis.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rlogis.c -o rlogis.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnchisq.c -o dnchisq.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnchisq.c -o pnchisq.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnchisq.c -o qnchisq.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnbeta.c -o dnbeta.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnbeta.c -o pnbeta.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnbeta.c -o qnbeta.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnf.c -o pnf.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnt.c -o pnt.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnf.c -o qnf.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnt.c -o qnt.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ptukey.c -o ptukey.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qtukey.c -o qtukey.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c toms708.c -o toms708.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c wilcox.c -o wilcox.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c signrank.c -o signrank.lo gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c std_unif.c -o std_unif.lo gcc -std=gnu99 -shared -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -o libRmath.so -Wl,-soname,libRmath.so.1 mlutils.lo d1mach.lo i1mach.lo fmax2.lo fmin2.lo fprec.lo fround.lo ftrunc.lo sign.lo fsign.lo imax2.lo imin2.lo chebyshev.lo log1p.lo expm1.lo lgammacor.lo gammalims.lo stirlerr.lo bd0.lo gamma.lo lgamma.lo gamma_cody.lo beta.lo lbeta.lo polygamma.lo cospi.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_y.lo choose.lo snorm.lo sexp.lo dgamma.lo pgamma.lo qgamma.lo rgamma.lo dbeta.lo pbeta.lo qbeta.lo rbeta.lo dunif.lo punif.lo qunif.lo runif.lo dnorm.lo pnorm.lo qnorm.lo rnorm.lo dlnorm.lo plnorm.lo qlnorm.lo rlnorm.lo df.lo pf.lo qf.lo rf.lo dnf.lo dt.lo pt.lo qt.lo rt.lo dnt.lo dchisq.lo pchisq.lo qchisq.lo rchisq.lo rnchisq.lo dbinom.lo pbinom.lo qbinom.lo rbinom.lo rmultinom.lo dcauchy.lo pcauchy.lo qcauchy.lo rcauchy.lo dexp.lo pexp.lo qexp.lo rexp.lo dgeom.lo pgeom.lo qgeom.lo rgeom.lo dhyper.lo phyper.lo qhyper.lo rhyper.lo dnbinom.lo pnbinom.lo qnbinom.lo rnbinom.lo dpois.lo ppois.lo qpois.lo rpois.lo dweibull.lo pweibull.lo qweibull.lo rweibull.lo dlogis.lo plogis.lo qlogis.lo rlogis.lo dnchisq.lo pnchisq.lo qnchisq.lo dnbeta.lo pnbeta.lo qnbeta.lo pnf.lo pnt.lo qnf.lo qnt.lo ptukey.lo qtukey.lo toms708.lo wilcox.lo signrank.lo std_unif.lo -lm make[2]: Leaving directory '/«PKGBUILDDIR»/src/nmath/standalone' make[2]: Entering directory '/«PKGBUILDDIR»/src/nmath/standalone' gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c mlutils.c -o mlutils.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c d1mach.c -o d1mach.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c i1mach.c -o i1mach.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fmax2.c -o fmax2.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fmin2.c -o fmin2.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fprec.c -o fprec.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fround.c -o fround.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ftrunc.c -o ftrunc.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c sign.c -o sign.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fsign.c -o fsign.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c imax2.c -o imax2.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c imin2.c -o imin2.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c chebyshev.c -o chebyshev.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c log1p.c -o log1p.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c expm1.c -o expm1.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lgammacor.c -o lgammacor.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gammalims.c -o gammalims.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c stirlerr.c -o stirlerr.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bd0.c -o bd0.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gamma.c -o gamma.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lgamma.c -o lgamma.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gamma_cody.c -o gamma_cody.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c beta.c -o beta.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lbeta.c -o lbeta.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c polygamma.c -o polygamma.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c cospi.c -o cospi.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_i.c -o bessel_i.o In file included from bessel_i.c:26:0: bessel_i.c: In function 'bessel_i': bessel_i.c:77:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ ./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4' #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4) ^ bessel_i.c:77:23: note: in expansion of macro '_' MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ bessel_i.c:77:25: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ ./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4' #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4) ^ bessel_i.c:77:23: note: in expansion of macro '_' MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ bessel_i.c: In function 'bessel_i_ex': bessel_i.c:122:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ ./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4' #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4) ^ bessel_i.c:122:23: note: in expansion of macro '_' MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ bessel_i.c:122:25: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ ./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4' #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4) ^ bessel_i.c:122:23: note: in expansion of macro '_' MATHLIB_WARNING4(_("bessel_i(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_j.c -o bessel_j.o In file included from bessel_j.c:27:0: bessel_j.c: In function 'bessel_j': bessel_j.c:79:21: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ ./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4' #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4) ^ bessel_j.c:79:19: note: in expansion of macro '_' MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ bessel_j.c:79:21: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ ./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4' #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4) ^ bessel_j.c:79:19: note: in expansion of macro '_' MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ bessel_j.c: In function 'bessel_j_ex': bessel_j.c:125:21: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ ./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4' #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4) ^ bessel_j.c:125:19: note: in expansion of macro '_' MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ bessel_j.c:125:21: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ ./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4' #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4) ^ bessel_j.c:125:19: note: in expansion of macro '_' MATHLIB_WARNING4(_("bessel_j(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_k.c -o bessel_k.o In file included from bessel_k.c:27:0: bessel_k.c: In function 'bessel_k': bessel_k.c:71:21: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ ./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4' #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4) ^ bessel_k.c:71:19: note: in expansion of macro '_' MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ bessel_k.c:71:21: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ ./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4' #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4) ^ bessel_k.c:71:19: note: in expansion of macro '_' MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ bessel_k.c: In function 'bessel_k_ex': bessel_k.c:108:21: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ ./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4' #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4) ^ bessel_k.c:108:19: note: in expansion of macro '_' MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ bessel_k.c:108:21: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ ./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4' #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4) ^ bessel_k.c:108:19: note: in expansion of macro '_' MATHLIB_WARNING4(_("bessel_k(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_y.c -o bessel_y.o In file included from bessel_y.c:26:0: bessel_y.c: In function 'bessel_y': bessel_y.c:86:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ ./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4' #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4) ^ bessel_y.c:86:23: note: in expansion of macro '_' MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ bessel_y.c:86:25: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ ./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4' #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4) ^ bessel_y.c:86:23: note: in expansion of macro '_' MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ bessel_y.c: In function 'bessel_y_ex': bessel_y.c:134:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ ./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4' #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4) ^ bessel_y.c:134:23: note: in expansion of macro '_' MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ bessel_y.c:134:25: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat=] MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ ./../nmath.h:103:49: note: in definition of macro 'MATHLIB_WARNING4' #define MATHLIB_WARNING4(fmt,x,x2,x3,x4) printf(fmt,x,x2,x3,x4) ^ bessel_y.c:134:23: note: in expansion of macro '_' MATHLIB_WARNING4(_("bessel_y(%g): ncalc (=%ld) != nb (=%ld); alpha=%g. Arg. out of range?\n"), ^ gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c choose.c -o choose.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c snorm.c -o snorm.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c sexp.c -o sexp.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dgamma.c -o dgamma.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pgamma.c -o pgamma.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qgamma.c -o qgamma.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rgamma.c -o rgamma.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dbeta.c -o dbeta.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pbeta.c -o pbeta.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qbeta.c -o qbeta.o In file included from qbeta.c:33:0: ../../../src/include/R_ext/Arith.h:89:0: warning: "R_FINITE" redefined # define R_FINITE(x) isfinite(x) ^ In file included from qbeta.c:31:0: ./../nmath.h:107:0: note: this is the location of the previous definition #define R_FINITE(x) R_finite(x) ^ gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rbeta.c -o rbeta.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dunif.c -o dunif.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c punif.c -o punif.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qunif.c -o qunif.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c runif.c -o runif.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnorm.c -o dnorm.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnorm.c -o pnorm.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnorm.c -o qnorm.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnorm.c -o rnorm.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dlnorm.c -o dlnorm.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c plnorm.c -o plnorm.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qlnorm.c -o qlnorm.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rlnorm.c -o rlnorm.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c df.c -o df.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pf.c -o pf.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qf.c -o qf.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rf.c -o rf.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnf.c -o dnf.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dt.c -o dt.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pt.c -o pt.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qt.c -o qt.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rt.c -o rt.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnt.c -o dnt.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dchisq.c -o dchisq.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pchisq.c -o pchisq.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qchisq.c -o qchisq.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rchisq.c -o rchisq.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnchisq.c -o rnchisq.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dbinom.c -o dbinom.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pbinom.c -o pbinom.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qbinom.c -o qbinom.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rbinom.c -o rbinom.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rmultinom.c -o rmultinom.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dcauchy.c -o dcauchy.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pcauchy.c -o pcauchy.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qcauchy.c -o qcauchy.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rcauchy.c -o rcauchy.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dexp.c -o dexp.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pexp.c -o pexp.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qexp.c -o qexp.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rexp.c -o rexp.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dgeom.c -o dgeom.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pgeom.c -o pgeom.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qgeom.c -o qgeom.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rgeom.c -o rgeom.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dhyper.c -o dhyper.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c phyper.c -o phyper.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qhyper.c -o qhyper.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rhyper.c -o rhyper.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnbinom.c -o dnbinom.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnbinom.c -o pnbinom.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnbinom.c -o qnbinom.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnbinom.c -o rnbinom.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dpois.c -o dpois.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ppois.c -o ppois.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qpois.c -o qpois.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rpois.c -o rpois.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dweibull.c -o dweibull.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pweibull.c -o pweibull.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qweibull.c -o qweibull.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rweibull.c -o rweibull.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dlogis.c -o dlogis.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c plogis.c -o plogis.o gcc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H 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qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o std_unif.o ranlib libRmath.a make[2]: Leaving directory '/«PKGBUILDDIR»/src/nmath/standalone' make[1]: Leaving directory '/«PKGBUILDDIR»/src/nmath/standalone' R_GZIPCMD="gzip -n" \ /usr/bin/make docs R_CMD_BUILD_HELP_OPTS="--txt --example" make[1]: Entering directory '/«PKGBUILDDIR»' make[2]: Entering directory '/«PKGBUILDDIR»/m4' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/«PKGBUILDDIR»/m4' make[2]: Entering directory 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Entering directory '/«PKGBUILDDIR»/src/include/R_ext' make[4]: Nothing to be done for 'R'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/include/R_ext' make[3]: Leaving directory '/«PKGBUILDDIR»/src/include' make[3]: Entering directory '/«PKGBUILDDIR»/src/extra' make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/tre' make[5]: Entering directory '/«PKGBUILDDIR»/src/extra/tre' make[5]: 'Makedeps' is up to date. make[5]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre' make[5]: Entering directory '/«PKGBUILDDIR»/src/extra/tre' make[5]: 'libtre.a' is up to date. make[5]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre' make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre' make[3]: Leaving directory '/«PKGBUILDDIR»/src/extra' make[3]: Entering directory '/«PKGBUILDDIR»/src/appl' make[4]: Entering directory '/«PKGBUILDDIR»/src/appl' make[4]: 'libappl.a' is up to date. make[4]: Leaving directory '/«PKGBUILDDIR»/src/appl' make[3]: Leaving directory '/«PKGBUILDDIR»/src/appl' make[3]: Entering directory '/«PKGBUILDDIR»/src/nmath' make[4]: Entering directory '/«PKGBUILDDIR»/src/nmath' make[4]: 'libnmath.a' is up to date. make[4]: Leaving directory '/«PKGBUILDDIR»/src/nmath' make[3]: Leaving directory '/«PKGBUILDDIR»/src/nmath' make[3]: Entering directory '/«PKGBUILDDIR»/src/unix' make[4]: Entering directory '/«PKGBUILDDIR»/src/unix' make[4]: 'libunix.a' is up to date. make[4]: Leaving directory '/«PKGBUILDDIR»/src/unix' make[4]: Entering directory '/«PKGBUILDDIR»/src/unix' gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wl,-Bsymbolic-functions -Wl,-z,relro -DR_HOME='"/«PKGBUILDDIR»"' \ -o Rscript ./Rscript.c make[4]: Leaving directory '/«PKGBUILDDIR»/src/unix' make[3]: Leaving directory '/«PKGBUILDDIR»/src/unix' make[3]: Entering directory '/«PKGBUILDDIR»/src/main' make[4]: Entering directory '/«PKGBUILDDIR»/src/main' make[5]: Entering directory '/«PKGBUILDDIR»/src/main' /«PKGBUILDDIR»/lib/libR.so is unchanged make[5]: Leaving directory '/«PKGBUILDDIR»/src/main' make[4]: Leaving directory '/«PKGBUILDDIR»/src/main' make[4]: Entering directory '/«PKGBUILDDIR»/src/main' make[5]: Entering directory '/«PKGBUILDDIR»/src/main' /«PKGBUILDDIR»/bin/exec/R is unchanged make[5]: Leaving directory '/«PKGBUILDDIR»/src/main' make[4]: Leaving directory '/«PKGBUILDDIR»/src/main' make[3]: Leaving directory '/«PKGBUILDDIR»/src/main' make[3]: Entering directory '/«PKGBUILDDIR»/src/modules' make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/internet' make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/internet' make[5]: 'internet.so' is up to date. make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/internet' make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/internet' make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/lapack' make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/lapack' make[5]: 'lapack.so' is up to date. make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/lapack' make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/lapack' make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/X11' make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/X11' make[5]: 'R_X11.so' is up to date. make[5]: 'R_de.so' is up to date. make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11' make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/X11' /«PKGBUILDDIR»/modules/R_X11.so is unchanged /«PKGBUILDDIR»/modules/R_de.so is unchanged make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11' make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11' make[3]: Leaving directory '/«PKGBUILDDIR»/src/modules' make[3]: Entering directory '/«PKGBUILDDIR»/src/library' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/profile' building system startup profile make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/profile' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/translations' building package 'translations' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/translations' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/translations' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/translations' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/base' building package 'base' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/base' all.R is unchanged make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/base' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/base' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/tools' building package 'tools' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tools' all.R is unchanged make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tools' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tools' make[6]: Entering directory '/«PKGBUILDDIR»/src/library/tools/src' make[7]: Entering directory '/«PKGBUILDDIR»/src/library/tools/src' ../../../../library/tools/libs/tools.so is unchanged make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/tools/src' make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/tools/src' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tools' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tools' installing 'sysdata.rda' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tools' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/tools' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/compiler' building package 'compiler' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/compiler' all.R is unchanged make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/compiler' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/compiler' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/compiler' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/compiler' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/base' make[4]: Nothing to be done for 'mklazycomp'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/base' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/tools' make[4]: Nothing to be done for 'mklazycomp'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/tools' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/utils' building package 'utils' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/utils' all.R is unchanged make[5]: Nothing to be done for 'iconvlist'. make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/utils' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/utils' make[6]: Entering directory '/«PKGBUILDDIR»/src/library/utils/src' make[7]: Entering directory '/«PKGBUILDDIR»/src/library/utils/src' ../../../../library/utils/libs/utils.so is unchanged make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/utils/src' make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/utils/src' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/utils' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/utils' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/utils' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/utils' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices' building package 'grDevices' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices' all.R is unchanged make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices' make[6]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src' make[7]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src' ../../../../library/grDevices/libs/grDevices.so is unchanged make[8]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo' make[9]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo' make[10]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo' make[10]: 'cairo.so' is up to date. make[10]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo' make[9]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo' make[8]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo' make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src' make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/graphics' building package 'graphics' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/graphics' all.R is unchanged make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/graphics' make[6]: Entering directory '/«PKGBUILDDIR»/src/library/graphics/src' make[7]: Entering directory '/«PKGBUILDDIR»/src/library/graphics/src' ../../../../library/graphics/libs/graphics.so is unchanged make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics/src' make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics/src' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/graphics' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/stats' building package 'stats' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats' all.R is unchanged make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats' make[6]: Entering directory '/«PKGBUILDDIR»/src/library/stats/src' make[7]: Entering directory '/«PKGBUILDDIR»/src/library/stats/src' ../../../../library/stats/libs/stats.so is unchanged make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/stats/src' make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/stats/src' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/stats' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/datasets' building package 'datasets' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/datasets' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/datasets' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/datasets' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/methods' building package 'methods' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/methods' all.R is unchanged make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/methods' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/methods' make[6]: Entering directory '/«PKGBUILDDIR»/src/library/methods/src' make[7]: Entering directory '/«PKGBUILDDIR»/src/library/methods/src' ../../../../library/methods/libs/methods.so is unchanged make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/methods/src' make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/methods/src' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/methods' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/methods' make[5]: Nothing to be done for 'RfilesLazy'. make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/methods' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/methods' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/grid' building package 'grid' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grid' all.R is unchanged make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grid' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grid' make[6]: Entering directory '/«PKGBUILDDIR»/src/library/grid/src' make[7]: Entering directory '/«PKGBUILDDIR»/src/library/grid/src' ../../../../library/grid/libs/grid.so is unchanged make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/grid/src' make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/grid/src' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grid' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grid' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grid' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/grid' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/splines' building package 'splines' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/splines' all.R is unchanged make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/splines' make[6]: Entering directory '/«PKGBUILDDIR»/src/library/splines/src' make[7]: Entering directory '/«PKGBUILDDIR»/src/library/splines/src' ../../../../library/splines/libs/splines.so is unchanged make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/splines/src' make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/splines/src' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/splines' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/splines' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/stats4' building package 'stats4' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats4' all.R is unchanged make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats4' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk' building package 'tcltk' all.R is unchanged make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk/src' make[6]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk/src' ../../../../library/tcltk/libs/tcltk.so is unchanged make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk/src' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk/src' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/parallel' building package 'parallel' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel' all.R is unchanged make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel' make[6]: Entering directory '/«PKGBUILDDIR»/src/library/parallel/src' make[7]: Entering directory '/«PKGBUILDDIR»/src/library/parallel/src' ../../../../library/parallel/libs/parallel.so is unchanged make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel/src' make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel/src' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/base' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/base' installing parsed NAMESPACE files make[3]: Leaving directory '/«PKGBUILDDIR»/src/library' make[2]: Leaving directory '/«PKGBUILDDIR»/src' make[2]: Entering directory '/«PKGBUILDDIR»/tests' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/«PKGBUILDDIR»/tests' you should 'make docs' now ... make[2]: Entering directory '/«PKGBUILDDIR»/doc' creating NEWS creating NEWS.pdf make[3]: Entering directory '/«PKGBUILDDIR»/doc/manual' creating doc/manual/R-FAQ.html creating doc/manual/version.texi creating doc/manual/R-admin.html creating doc/manual/R-data.html creating doc/manual/R-exts.html creating doc/manual/R-intro.html creating doc/manual/R-ints.html creating doc/manual/R-lang.html make[4]: Entering directory '/«PKGBUILDDIR»/doc/html' make[4]: Leaving directory '/«PKGBUILDDIR»/doc/html' make[3]: Leaving directory '/«PKGBUILDDIR»/doc/manual' make[2]: Leaving directory '/«PKGBUILDDIR»/doc' make[2]: Entering directory '/«PKGBUILDDIR»/src/library' make[3]: Entering directory '/«PKGBUILDDIR»/src/library' installing parsed Rd make[4]: Entering directory '/«PKGBUILDDIR»/src/library' base stats utils methods graphics grDevices datasets grid tools tcltk splines stats4 compiler parallel make[4]: Leaving directory '/«PKGBUILDDIR»/src/library' make[3]: Leaving directory '/«PKGBUILDDIR»/src/library' make[3]: Entering directory '/«PKGBUILDDIR»/src/library' building/updating package metadata ... make[3]: Leaving directory '/«PKGBUILDDIR»/src/library' make[3]: Entering directory '/«PKGBUILDDIR»/src/library' writing package indices make[4]: Entering directory '/«PKGBUILDDIR»/src/library' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library' make[3]: Leaving directory '/«PKGBUILDDIR»/src/library' make[2]: Leaving directory '/«PKGBUILDDIR»/src/library' make[1]: Leaving directory '/«PKGBUILDDIR»' /usr/bin/make javaconf make[1]: Entering directory '/«PKGBUILDDIR»' make[2]: Entering directory '/«PKGBUILDDIR»/m4' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/«PKGBUILDDIR»/m4' make[2]: Entering directory '/«PKGBUILDDIR»/tools' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/«PKGBUILDDIR»/tools' make[2]: Entering directory '/«PKGBUILDDIR»/doc' make[3]: Entering directory '/«PKGBUILDDIR»/doc/html' make[3]: Leaving directory '/«PKGBUILDDIR»/doc/html' make[3]: Entering directory '/«PKGBUILDDIR»/doc/manual' make[3]: Nothing to be done for 'R'. make[3]: Leaving directory '/«PKGBUILDDIR»/doc/manual' make[2]: Leaving directory '/«PKGBUILDDIR»/doc' make[2]: Entering directory '/«PKGBUILDDIR»/etc' make[2]: Leaving directory '/«PKGBUILDDIR»/etc' make[2]: Entering directory '/«PKGBUILDDIR»/share' make[2]: Leaving directory '/«PKGBUILDDIR»/share' make[2]: Entering directory '/«PKGBUILDDIR»/src' make[3]: Entering directory '/«PKGBUILDDIR»/src/scripts' make[4]: Entering directory '/«PKGBUILDDIR»/src/scripts' make[4]: Leaving directory '/«PKGBUILDDIR»/src/scripts' make[3]: Leaving directory '/«PKGBUILDDIR»/src/scripts' make[3]: Entering directory '/«PKGBUILDDIR»/src/include' make[4]: Entering directory '/«PKGBUILDDIR»/src/include/R_ext' make[4]: Nothing to be done for 'R'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/include/R_ext' make[3]: Leaving directory '/«PKGBUILDDIR»/src/include' make[3]: Entering directory '/«PKGBUILDDIR»/src/extra' make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/tre' make[5]: Entering directory '/«PKGBUILDDIR»/src/extra/tre' make[5]: 'Makedeps' is up to date. make[5]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre' make[5]: Entering directory '/«PKGBUILDDIR»/src/extra/tre' make[5]: 'libtre.a' is up to date. make[5]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre' make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre' make[3]: Leaving directory '/«PKGBUILDDIR»/src/extra' make[3]: Entering directory '/«PKGBUILDDIR»/src/appl' make[4]: Entering directory '/«PKGBUILDDIR»/src/appl' make[4]: 'libappl.a' is up to date. make[4]: Leaving directory '/«PKGBUILDDIR»/src/appl' make[3]: Leaving directory '/«PKGBUILDDIR»/src/appl' make[3]: Entering directory '/«PKGBUILDDIR»/src/nmath' make[4]: Entering directory '/«PKGBUILDDIR»/src/nmath' make[4]: 'libnmath.a' is up to date. make[4]: Leaving directory '/«PKGBUILDDIR»/src/nmath' make[3]: Leaving directory '/«PKGBUILDDIR»/src/nmath' make[3]: Entering directory '/«PKGBUILDDIR»/src/unix' make[4]: Entering directory '/«PKGBUILDDIR»/src/unix' make[4]: 'libunix.a' is up to date. make[4]: Leaving directory '/«PKGBUILDDIR»/src/unix' make[4]: Entering directory '/«PKGBUILDDIR»/src/unix' gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wl,-Bsymbolic-functions -Wl,-z,relro -DR_HOME='"/«PKGBUILDDIR»"' \ -o Rscript ./Rscript.c make[4]: Leaving directory '/«PKGBUILDDIR»/src/unix' make[3]: Leaving directory '/«PKGBUILDDIR»/src/unix' make[3]: Entering directory '/«PKGBUILDDIR»/src/main' make[4]: Entering directory '/«PKGBUILDDIR»/src/main' make[5]: Entering directory '/«PKGBUILDDIR»/src/main' /«PKGBUILDDIR»/lib/libR.so is unchanged make[5]: Leaving directory '/«PKGBUILDDIR»/src/main' make[4]: Leaving directory '/«PKGBUILDDIR»/src/main' make[4]: Entering directory '/«PKGBUILDDIR»/src/main' make[5]: Entering directory '/«PKGBUILDDIR»/src/main' /«PKGBUILDDIR»/bin/exec/R is unchanged make[5]: Leaving directory '/«PKGBUILDDIR»/src/main' make[4]: Leaving directory '/«PKGBUILDDIR»/src/main' make[3]: Leaving directory '/«PKGBUILDDIR»/src/main' make[3]: Entering directory '/«PKGBUILDDIR»/src/modules' make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/internet' make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/internet' make[5]: 'internet.so' is up to date. make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/internet' make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/internet' make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/lapack' make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/lapack' make[5]: 'lapack.so' is up to date. make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/lapack' make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/lapack' make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/X11' make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/X11' make[5]: 'R_X11.so' is up to date. make[5]: 'R_de.so' is up to date. make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11' make[5]: Entering directory '/«PKGBUILDDIR»/src/modules/X11' /«PKGBUILDDIR»/modules/R_X11.so is unchanged /«PKGBUILDDIR»/modules/R_de.so is unchanged make[5]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11' make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11' make[3]: Leaving directory '/«PKGBUILDDIR»/src/modules' make[3]: Entering directory '/«PKGBUILDDIR»/src/library' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/profile' building system startup profile make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/profile' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/translations' building package 'translations' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/translations' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/translations' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/translations' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/base' building package 'base' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/base' all.R is unchanged make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/base' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/base' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/tools' building package 'tools' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tools' all.R is unchanged make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tools' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tools' make[6]: Entering directory '/«PKGBUILDDIR»/src/library/tools/src' make[7]: Entering directory '/«PKGBUILDDIR»/src/library/tools/src' ../../../../library/tools/libs/tools.so is unchanged make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/tools/src' make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/tools/src' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tools' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tools' installing 'sysdata.rda' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tools' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/tools' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/compiler' building package 'compiler' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/compiler' all.R is unchanged make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/compiler' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/compiler' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/compiler' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/compiler' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/base' make[4]: Nothing to be done for 'mklazycomp'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/base' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/tools' make[4]: Nothing to be done for 'mklazycomp'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/tools' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/utils' building package 'utils' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/utils' all.R is unchanged make[5]: Nothing to be done for 'iconvlist'. make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/utils' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/utils' make[6]: Entering directory '/«PKGBUILDDIR»/src/library/utils/src' make[7]: Entering directory '/«PKGBUILDDIR»/src/library/utils/src' ../../../../library/utils/libs/utils.so is unchanged make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/utils/src' make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/utils/src' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/utils' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/utils' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/utils' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/utils' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices' building package 'grDevices' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices' all.R is unchanged make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices' make[6]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src' make[7]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src' ../../../../library/grDevices/libs/grDevices.so is unchanged make[8]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo' make[9]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo' make[10]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo' make[10]: 'cairo.so' is up to date. make[10]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo' make[9]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo' make[8]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src/cairo' make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src' make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices/src' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grDevices' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/grDevices' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/graphics' building package 'graphics' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/graphics' all.R is unchanged make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/graphics' make[6]: Entering directory '/«PKGBUILDDIR»/src/library/graphics/src' make[7]: Entering directory '/«PKGBUILDDIR»/src/library/graphics/src' ../../../../library/graphics/libs/graphics.so is unchanged make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics/src' make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics/src' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/graphics' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/graphics' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/stats' building package 'stats' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats' all.R is unchanged make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats' make[6]: Entering directory '/«PKGBUILDDIR»/src/library/stats/src' make[7]: Entering directory '/«PKGBUILDDIR»/src/library/stats/src' ../../../../library/stats/libs/stats.so is unchanged make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/stats/src' make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/stats/src' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/stats' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/datasets' building package 'datasets' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/datasets' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/datasets' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/datasets' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/methods' building package 'methods' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/methods' all.R is unchanged make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/methods' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/methods' make[6]: Entering directory '/«PKGBUILDDIR»/src/library/methods/src' make[7]: Entering directory '/«PKGBUILDDIR»/src/library/methods/src' ../../../../library/methods/libs/methods.so is unchanged make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/methods/src' make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/methods/src' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/methods' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/methods' make[5]: Nothing to be done for 'RfilesLazy'. make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/methods' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/methods' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/grid' building package 'grid' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grid' all.R is unchanged make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grid' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grid' make[6]: Entering directory '/«PKGBUILDDIR»/src/library/grid/src' make[7]: Entering directory '/«PKGBUILDDIR»/src/library/grid/src' ../../../../library/grid/libs/grid.so is unchanged make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/grid/src' make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/grid/src' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grid' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/grid' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/grid' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/grid' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/splines' building package 'splines' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/splines' all.R is unchanged make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/splines' make[6]: Entering directory '/«PKGBUILDDIR»/src/library/splines/src' make[7]: Entering directory '/«PKGBUILDDIR»/src/library/splines/src' ../../../../library/splines/libs/splines.so is unchanged make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/splines/src' make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/splines/src' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/splines' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/splines' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/splines' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/stats4' building package 'stats4' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats4' all.R is unchanged make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/stats4' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/stats4' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk' building package 'tcltk' all.R is unchanged make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk/src' make[6]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk/src' ../../../../library/tcltk/libs/tcltk.so is unchanged make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk/src' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk/src' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/tcltk' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/tcltk' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/parallel' building package 'parallel' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel' all.R is unchanged make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel' make[6]: Entering directory '/«PKGBUILDDIR»/src/library/parallel/src' make[7]: Entering directory '/«PKGBUILDDIR»/src/library/parallel/src' ../../../../library/parallel/libs/parallel.so is unchanged make[7]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel/src' make[6]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel/src' make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel' make[5]: Entering directory '/«PKGBUILDDIR»/src/library/parallel' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/parallel' make[4]: Entering directory '/«PKGBUILDDIR»/src/library/base' make[4]: Leaving directory '/«PKGBUILDDIR»/src/library/base' installing parsed NAMESPACE files make[3]: Leaving directory '/«PKGBUILDDIR»/src/library' make[2]: Leaving directory '/«PKGBUILDDIR»/src' make[2]: Entering directory '/«PKGBUILDDIR»/tests' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/«PKGBUILDDIR»/tests' make[2]: Entering directory '/«PKGBUILDDIR»' configuring Java ... Java interpreter : /usr/lib/jvm/default-java/jre/bin/java Java version : 1.7.0_91 Java home path : /usr/lib/jvm/default-java Java compiler : /usr/lib/jvm/default-java/bin/javac Java headers gen.: /usr/lib/jvm/default-java/bin/javah Java archive tool: /usr/lib/jvm/default-java/bin/jar trying to compile and link a JNI program detected JNI cpp flags : -I$(JAVA_HOME)/include detected JNI linker flags : -L$(JAVA_HOME)/jre/lib/arm/server -ljvm make[3]: Entering directory '/tmp/Rjavareconf.dnF4yx' gcc -std=gnu99 -I/«PKGBUILDDIR»/include -DNDEBUG -I/usr/lib/jvm/default-java/include -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c conftest.c -o conftest.o gcc -std=gnu99 -shared -L/«PKGBUILDDIR»/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o conftest.so conftest.o -L/usr/lib/jvm/default-java/jre/lib/arm/server -ljvm -L/«PKGBUILDDIR»/lib -lR make[3]: Leaving directory '/tmp/Rjavareconf.dnF4yx' JAVA_HOME : /usr/lib/jvm/default-java Java library path: $(JAVA_HOME)/jre/lib/arm/server JNI cpp flags : -I$(JAVA_HOME)/include JNI linker flags : -L$(JAVA_HOME)/jre/lib/arm/server -ljvm Updating Java configuration in /«PKGBUILDDIR» Done. make[2]: Leaving directory '/«PKGBUILDDIR»' make[1]: Leaving directory '/«PKGBUILDDIR»' touch make-arch-stamp *** check *** touch check-stamp fakeroot debian/rules binary-arch *** install-arch *** dh_testdir dh_testroot dh_prep -a dh_installdirs -A /«PKGBUILDDIR»/debian/r-base-core /usr/bin/make DESTDIR=/«PKGBUILDDIR»/debian/r-base-core install make[1]: Entering directory '/«PKGBUILDDIR»' make[2]: Entering directory '/«PKGBUILDDIR»/m4' make[2]: Nothing to be done for 'install'. make[2]: Leaving directory '/«PKGBUILDDIR»/m4' make[2]: Entering directory '/«PKGBUILDDIR»/tools' make[2]: Nothing to be done for 'install'. make[2]: Leaving directory '/«PKGBUILDDIR»/tools' make[2]: Entering directory '/«PKGBUILDDIR»/doc' installing doc ... mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/doc mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/man/man1 make[3]: Entering directory '/«PKGBUILDDIR»/doc/html' installing doc/html ... mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/doc/html make[3]: Leaving directory '/«PKGBUILDDIR»/doc/html' make[3]: Entering directory '/«PKGBUILDDIR»/doc/manual' installing doc/manual ... mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/doc/manual mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/doc/manual/images make[3]: Leaving directory '/«PKGBUILDDIR»/doc/manual' make[2]: Leaving directory '/«PKGBUILDDIR»/doc' make[2]: Entering directory '/«PKGBUILDDIR»/etc' mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/etc installing etc ... make[2]: Leaving directory '/«PKGBUILDDIR»/etc' make[2]: Entering directory '/«PKGBUILDDIR»/share' installing share ... mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/R mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/dictionaries mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/encodings mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/java mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/licenses mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/make mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/Rd mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/Rd/macros mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/sh mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/texmf mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/texmf/bibtex/bib mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/texmf/bibtex/bst mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/texmf/tex/latex make[2]: Leaving directory '/«PKGBUILDDIR»/share' make[2]: Entering directory '/«PKGBUILDDIR»/src' make[3]: Entering directory '/«PKGBUILDDIR»/src/scripts' mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/bin make[3]: Leaving directory '/«PKGBUILDDIR»/src/scripts' make[3]: Entering directory '/«PKGBUILDDIR»/src/include' make[4]: Entering directory '/«PKGBUILDDIR»/src/include/R_ext' mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/include/R_ext make[4]: Leaving directory '/«PKGBUILDDIR»/src/include/R_ext' make[3]: Leaving directory '/«PKGBUILDDIR»/src/include' make[3]: Entering directory '/«PKGBUILDDIR»/src/extra' make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/blas' make[4]: Nothing to be done for 'install'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/blas' make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/bzip2' make[4]: Nothing to be done for 'install'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/bzip2' make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/pcre' make[4]: Nothing to be done for 'install'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/pcre' make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/tre' make[4]: Nothing to be done for 'install'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/tre' make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/xdr' make[4]: Nothing to be done for 'install'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/xdr' make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/xz' make[4]: Nothing to be done for 'install'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/xz' make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/zlib' make[4]: Nothing to be done for 'install'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/zlib' make[4]: Entering directory '/«PKGBUILDDIR»/src/extra/intl' make[4]: Nothing to be done for 'install'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/extra/intl' make[3]: Leaving directory '/«PKGBUILDDIR»/src/extra' make[3]: Entering directory '/«PKGBUILDDIR»/src/appl' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/«PKGBUILDDIR»/src/appl' make[3]: Entering directory '/«PKGBUILDDIR»/src/nmath' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/«PKGBUILDDIR»/src/nmath' make[3]: Entering directory '/«PKGBUILDDIR»/src/unix' gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wl,-Bsymbolic-functions -Wl,-z,relro -DR_HOME='"/usr/lib/R"' \ -o Rscript ./Rscript.c mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/lib/pkgconfig make[3]: Leaving directory '/«PKGBUILDDIR»/src/unix' make[3]: Entering directory '/«PKGBUILDDIR»/src/main' mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/bin/exec make[4]: Entering directory '/«PKGBUILDDIR»/src/main' make[4]: Leaving directory '/«PKGBUILDDIR»/src/main' make[4]: Entering directory '/«PKGBUILDDIR»/src/main' mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/lib make[4]: Leaving directory '/«PKGBUILDDIR»/src/main' make[3]: Leaving directory '/«PKGBUILDDIR»/src/main' make[3]: Entering directory '/«PKGBUILDDIR»/src/modules' make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/internet' mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/modules make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/internet' make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/lapack' make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/lapack' make[4]: Entering directory '/«PKGBUILDDIR»/src/modules/X11' make[4]: Leaving directory '/«PKGBUILDDIR»/src/modules/X11' make[3]: Leaving directory '/«PKGBUILDDIR»/src/modules' make[3]: Entering directory '/«PKGBUILDDIR»/src/library' mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/library installing packages ... building HTML index ... make[3]: Leaving directory '/«PKGBUILDDIR»/src/library' make[2]: Leaving directory '/«PKGBUILDDIR»/src' make[2]: Entering directory '/«PKGBUILDDIR»/tests' make[2]: Nothing to be done for 'install'. make[2]: Leaving directory '/«PKGBUILDDIR»/tests' make[1]: Leaving directory '/«PKGBUILDDIR»' (cd src/unix; \ rm -vf Rscript /«PKGBUILDDIR»/debian/r-base-core/usr/bin/Rscript; \ /usr/bin/make CFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT" \ CXXFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT" \ FFLAGS="-g -O2 -fstack-protector-strong -D_REENTRANT" \ CC="gcc -std=gnu99" \ CXX=g++ \ F77=gfortran \ RHOME=/usr/lib/R \ DESTDIR=/«PKGBUILDDIR»/debian/r-base-core \ install-Rscript ) removed 'Rscript' removed '/«PKGBUILDDIR»/debian/r-base-core/usr/bin/Rscript' make[1]: Entering directory '/«PKGBUILDDIR»/src/unix' gcc -std=gnu99 -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -Wl,-Bsymbolic-functions -Wl,-z,relro -DR_HOME='"/usr/lib/R"' \ -o Rscript ./Rscript.c make[1]: Leaving directory '/«PKGBUILDDIR»/src/unix' #ls -ltr /«PKGBUILDDIR»/debian/r-base-core/usr/bin/ #strings src/unix/Rscript cp -vax src/unix/Rscript /«PKGBUILDDIR»/debian/r-base-core/usr/bin/ 'src/unix/Rscript' -> '/«PKGBUILDDIR»/debian/r-base-core/usr/bin/Rscript' #ls -ltr /«PKGBUILDDIR»/debian/r-base-core/usr/bin/ #strings /«PKGBUILDDIR»/debian/r-base-core/usr/bin/Rscript (cd src/nmath/standalone; \ /usr/bin/make DESTDIR=/«PKGBUILDDIR»/debian/r-base-core install ) make[1]: Entering directory '/«PKGBUILDDIR»/src/nmath/standalone' make[2]: Entering directory '/«PKGBUILDDIR»/src/include' make[2]: 'Rmath.h' is up to date. make[2]: Leaving directory '/«PKGBUILDDIR»/src/include' /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/include/Rmath.h is unchanged make[1]: Leaving directory '/«PKGBUILDDIR»/src/nmath/standalone' chmod a+x /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/share/sh/echo.sh rm -v /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/COPYING removed '/«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/COPYING' (cd /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/; \ ln -s ../../share/common-licenses/GPL-2 COPYING) rm -v /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/doc/COPYING removed '/«PKGBUILDDIR»/debian/r-base-core/usr/share/R/doc/COPYING' (cd /«PKGBUILDDIR»/debian/r-base-core/usr/share/R/doc; \ ln -s ../../../share/common-licenses/GPL-2 COPYING) # edd 03 Oct 2006 use link into /usr/share/, not /usr/lib/ (cd /«PKGBUILDDIR»/debian/r-base-core/usr/share/texmf/tex/latex && \ ln -s ../../../R/share/texmf R) dh_movefiles --sourcedir=debian/r-base-core -pr-doc-html dh_movefiles --sourcedir=debian/r-base-core -pr-base-html dh_movefiles --sourcedir=debian/r-base-core -pr-base-latex make prefix=/«PKGBUILDDIR»/debian/r-base-core/usr \ rdocdir=/«PKGBUILDDIR»/debian/r-base-core/usr/share/R/doc \ install-pdf make[1]: Entering directory '/«PKGBUILDDIR»' make[2]: Entering directory '/«PKGBUILDDIR»/doc/manual' creating doc/manual/version.tex collecting LaTeX docs for package 'base' ... Converting parsed Rd's to LaTeX .......................................... collecting LaTeX docs for package 'tools' ... Converting parsed Rd's to LaTeX ...... collecting LaTeX docs for package 'utils' ... Converting parsed Rd's to LaTeX ............. collecting LaTeX docs for package 'grDevices' ... Converting parsed Rd's to LaTeX ...... collecting LaTeX docs for package 'graphics' ... Converting parsed Rd's to LaTeX ....... collecting LaTeX docs for package 'stats' ... Converting parsed Rd's to LaTeX .............................. collecting LaTeX docs for package 'datasets' ... Converting parsed Rd's to LaTeX ........ collecting LaTeX docs for package 'methods' ... Converting parsed Rd's to LaTeX ....... collecting LaTeX docs for package 'grid' ... Converting parsed Rd's to LaTeX ......... collecting LaTeX docs for package 'splines' ... Converting parsed Rd's to LaTeX . collecting LaTeX docs for package 'stats4' ... Converting parsed Rd's to LaTeX . collecting LaTeX docs for package 'tcltk' ... Converting parsed Rd's to LaTeX . collecting LaTeX docs for package 'compiler' ... Converting parsed Rd's to LaTeX collecting LaTeX docs for package 'parallel' ... Converting parsed Rd's to LaTeX . PDF/LaTeX documentation: full reference index ... This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./fullrefman.tex LaTeX2e <2015/10/01> patch level 2 Babel <3.9m> and hyphenation patterns for 2 languages loaded. (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2014/09/29 v1.4h Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (../../share/texmf/tex/latex/Rd.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def)) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/zi4.sty `inconsolata-zi4' v1.05, 2014/06/22 Text macros for Inconsolata (msharpe) (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/pdftex-def/pdftex.def (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty))) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg)) Package hyperref Message: Driver (autodetected): hpdftex. (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 366. Package hyperref Warning: Option `pagebackref' has already been used, (hyperref) setting the option has no effect on input line 366. ) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/graphics.cfg))) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty) Writing index file fullrefman.idx No file fullrefman.aux. (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [1] [2] (./base-pkg.tex Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd) Underfull \hbox (badness 4595) in paragraph at lines 40--43 []\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h igh-est, for [1] [2] Underfull \hbox (badness 1960) in paragraph at lines 141--149 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1 /ptm/m/n/10 such that \T1/zi4/m/n/10 1 - x != 1\T1/ptm/m/n/10 . Underfull \hbox (badness 10000) in paragraph at lines 141--149 \T1/ptm/m/n/10 It equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1 /ptm/m/n/10 if Underfull \hbox (badness 10000) in paragraph at lines 141--149 \T1/zi4/m/n/10 double.base \T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.roundin g \T1/ptm/m/n/10 is 0; oth-er-wise, it is Underfull \hbox (badness 1668) in paragraph at lines 152--159 []\T1/ptm/m/n/10 the largest nor-mal-ized floating-point num-ber. Typ-i-cally, it is equal to [3] [4] [5] Underfull \hbox (badness 1178) in paragraph at lines 296--300 []\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/ 10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues [6] Underfull \hbox (badness 3977) in paragraph at lines 381--384 []\T1/ptm/m/n/10 logical: should \T1/zi4/m/n/10 minlength \T1/ptm/m/n/10 be ob- served strictly? Note that set-ting [7] [8] Underfull \hbox (badness 2556) in paragraph at lines 511--517 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ', [9] [10] [11] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [12] [13] [14] [15] [16] [17] [18] Underfull \hbox (badness 2671) in paragraph at lines 1122--1125 []\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec- tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis t of length [19] [20] [21] [22] Underfull \hbox (badness 4072) in paragraph at lines 1339--1345 []\T1/zi4/m/n/10 %% \T1/ptm/m/n/10 in-di-cates \T1/zi4/m/n/10 x mod y \T1/ptm/m /n/10 and \T1/zi4/m/n/10 %/% \T1/ptm/m/n/10 in-di-cates in-te-ger di-vi-sion. I t is guar-an-teed that [23] [24] [25] [26] [27] [28] [29] Overfull \hbox (26.88089pt too wide) in paragraph at lines 1849--1849 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [30] [31] [32] Underfull \hbox (badness 10000) in paragraph at lines 2034--2036 []\T1/ptm/m/n/10 a date-time ob-ject, or some-thing which can be co-erced by [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] Underfull \hbox (badness 10000) in paragraph at lines 3532--3534 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] Underfull \hbox (badness 2521) in paragraph at lines 4728--4730 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] Underfull \hbox (badness 2096) in paragraph at lines 5945--5958 []\T1/ptm/m/n/10 New restarts for \T1/zi4/m/n/10 withRestarts \T1/ptm/m/n/10 ca n be spec-i-fied in sev-eral ways. The sim-plest is in [94] [95] [96] Overfull \hbox (58.35893pt too wide) in paragraph at lines 6146--6149 []\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa ult", "internal", "wininet", "libcurl")\T1/ptm/m/n/10 : [97] [98] Underfull \hbox (badness 10000) in paragraph at lines 6290--6293 []\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo st gen-eral form (from RFC1738) is [99] [100] Underfull \hbox (badness 1442) in paragraph at lines 6451--6457 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \ T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re- move a Underfull \hbox (badness 1248) in paragraph at lines 6451--6457 \T1/ptm/m/n/10 Byte Or-der Mark if present (which it of-ten is for files and we b-pages gen-er-ated by Mi- Underfull \hbox (badness 2080) in paragraph at lines 6451--6457 \T1/ptm/m/n/10 crosoft ap-pli-ca-tions). If a BOM is re-quired (it is not rec-o m-mended) when writ-ing it [101] Underfull \hbox (badness 3568) in paragraph at lines 6512--6519 \T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as [102] [103] Underfull \vbox (badness 10000) has occurred while \output is active [104] [105] [106] [107] [108] [109] [110] [111] Underfull \hbox (badness 2096) in paragraph at lines 7149--7153 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [112] Underfull \hbox (badness 4595) in paragraph at lines 7206--7209 []\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h igh-est, for [113] Underfull \hbox (badness 3000) in paragraph at lines 7242--7244 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0, \T1/zi4/m/n/10 getOption("OutDec") \T1/ptm/m/n/10 is con-sulted when la-bels are con-structed for Underfull \hbox (badness 2351) in paragraph at lines 7267--7270 [][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T 1/ptm/m/n/10 , [114] [115] [116] [117] Underfull \hbox (badness 10000) in paragraph at lines 7517--7528 []\T1/zi4/m/n/10 data.frame \T1/ptm/m/n/10 con-verts each of its ar-gu-ments to a data frame by call-ing [118] Underfull \hbox (badness 4479) in paragraph at lines 7589--7598 [][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[] [][] \T1/ptm/m/n/10 (for the col-umn names), Underfull \hbox (badness 2469) in paragraph at lines 7589--7598 [][]\T1/zi4/m/n/10 [.data.frame[][][] \T1/ptm/m/n/10 for sub-set-ting meth-ods, [][]\T1/zi4/m/n/10 Math.data.frame[][][] \T1/ptm/m/n/10 etc, about \T1/ptm/m/i t/10 Group \T1/ptm/m/n/10 meth-ods for [119] [120] [121] [122] [123] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] Underfull \hbox (badness 1394) in paragraph at lines 9200--9205 []\T1/ptm/m/n/10 Subtraction of date-time ob-jects gives an ob-ject of this cla ss, by call-ing \T1/zi4/m/n/10 difftime \T1/ptm/m/n/10 with [144] [145] [146] [147] [148] Underfull \hbox (badness 1052) in paragraph at lines 9537--9542 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 dontCheck \T1/ptm/m/n/10 func-tion is the s ame as [][]\T1/zi4/m/n/10 identity[][][]\T1/ptm/m/n/10 , but is in-ter-preted b y \T1/zi4/m/n/10 R CMD check Underfull \hbox (badness 1231) in paragraph at lines 9537--9542 \T1/ptm/m/n/10 code anal-y-sis as a di-rec-tive to sup-press check-ing of \T1/z i4/m/n/10 x\T1/ptm/m/n/10 . Cur-rently this is only used by [149] [150] Underfull \hbox (badness 1735) in paragraph at lines 9675--9679 \T1/zi4/m/n/10 754-[]2008$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Double _ precision$[][]\T1/ptm/m/n/10 , [][]$\T1/ zi4/m/n/10 https : / / en . wikipedia . [151] [152] [153] [154] [155] [156] Underfull \hbox (badness 2150) in paragraph at lines 10079--10082 []\T1/ptm/m/n/10 logical in-di-cat-ing if du-pli-ca-tion should be con-sid-ered from the re-verse [157] Underfull \hbox (badness 6396) in paragraph at lines 10093--10101 []\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len t method def-i-ni-tions for Underfull \hbox (badness 2409) in paragraph at lines 10134--10141 []\T1/ptm/m/n/10 Except for fac-tors, log-i-cal and raw vec-tors the de-fault \ T1/zi4/m/n/10 nmax = NA \T1/ptm/m/n/10 is equiv-a-lent to [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] Underfull \hbox (badness 4569) in paragraph at lines 11178--11182 []\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been passed as an ar-gu-ment Underfull \hbox (badness 2401) in paragraph at lines 11178--11182 \T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller' s en-vi-ron-ment, i.e., one needs [174] [175] [176] [177] [178] [179] [180] [181] Underfull \hbox (badness 2698) in paragraph at lines 11754--11763 []\T1/ptm/m/n/10 Both \T1/zi4/m/n/10 $ \T1/ptm/m/n/10 and \T1/zi4/m/n/10 [[ \T1 /ptm/m/n/10 can be ap-plied to en-vi-ron-ments. Only char-ac-ter in-dices are a l-lowed Underfull \hbox (badness 4341) in paragraph at lines 11754--11763 \T1/ptm/m/n/10 and no par-tial match-ing is done. The se-man-tics of these op-e r-a-tions are those of [182] [183] [184] [185] [186] [187] [188] [189] [190] [191] Underfull \hbox (badness 6236) in paragraph at lines 12398--12401 []\T1/ptm/m/n/10 For \T1/zi4/m/n/10 iconv \T1/ptm/m/n/10 this will give the im- ple-men-ta-tion as well as the ver-sion, for ex-am-ple [192] [193] [194] [195] [196] [197] Underfull \hbox (badness 2253) in paragraph at lines 12776--12778 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [198] Underfull \hbox (badness 1565) in paragraph at lines 12847--12851 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/ 10 , and [199] Underfull \hbox (badness 10000) in paragraph at lines 12891--12893 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m /n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with [200] [201] Underfull \hbox (badness 1466) in paragraph at lines 13032--13035 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/ zi4/m/n/10 file.copy \T1/ptm/m/n/10 and [202] [203] Underfull \hbox (badness 10000) in paragraph at lines 13140--13144 [][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [ ][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 13151--13154 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [204] [205] [206] [207] Underfull \hbox (badness 3965) in paragraph at lines 13403--13407 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] Underfull \hbox (badness 4429) in paragraph at lines 14133--14136 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] \T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for [219] Underfull \hbox (badness 10000) in paragraph at lines 14225--14227 []\T1/ptm/m/n/10 If you set \T1/zi4/m/n/10 format \T1/ptm/m/n/10 it over-rides the set-ting of \T1/zi4/m/n/10 mode\T1/ptm/m/n/10 , so Underfull \hbox (badness 10000) in paragraph at lines 14231--14235 []\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b ers on the dec-i-mal point, so [220] Underfull \hbox (badness 10000) in paragraph at lines 14273--14277 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt m/m/n/10 3.2.0: for use Underfull \hbox (badness 4156) in paragraph at lines 14273--14277 \T1/ptm/m/n/10 within [][]\T1/zi4/m/n/10 print[][][] \T1/ptm/m/n/10 meth-ods in pack-ages which might be used with ear-lier ver-sions: use [221] Underfull \vbox (badness 3803) has occurred while \output is active [222] [223] [224] [225] [226] [227] [228] [229] Underfull \hbox (badness 2452) in paragraph at lines 14853--14857 []\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 14853--14857 \T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_ WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and [230] [231] [232] Underfull \hbox (badness 1092) in paragraph at lines 15026--15031 [][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t he DLL has been loaded us-ing [233] [234] [235] [236] Underfull \hbox (badness 6741) in paragraph at lines 15274--15278 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \ T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10 , [237] [238] [239] [240] Underfull \hbox (badness 1867) in paragraph at lines 15580--15587 []\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][] [] (or char-ac-ter string for [241] [242] [243] [244] Underfull \vbox (badness 10000) has occurred while \output is active [245] [246] Underfull \hbox (badness 3679) in paragraph at lines 15960--15962 []\T1/ptm/m/n/10 The TRE li-brary of Ville Lau-rikari ([][]$\T1/zi4/m/n/10 http : / / laurikari . net / tre/$[][]\T1/ptm/m/n/10 ) is used ex-cept for [247] [248] [249] [250] [251] [252] [253] Underfull \hbox (badness 1478) in paragraph at lines 16440--16443 []\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [254] [255] [256] [257] Underfull \hbox (badness 10000) in paragraph at lines 16693--16695 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 http : / / www . unicode . org / reports / tr35 / [258] [259] [260] [261] [262] [263] [264] [265] [266] Underfull \hbox (badness 1442) in paragraph at lines 17256--17258 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see [267] Underfull \hbox (badness 2452) in paragraph at lines 17348--17364 [][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 , [268] [269] [270] [271] [272] [273] [274] Underfull \hbox (badness 1248) in paragraph at lines 17756--17759 []\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n /10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/ m/n/10 , [275] [276] [277] [278] Underfull \hbox (badness 4739) in paragraph at lines 18012--18014 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [279] [280] [281] [282] [283] [284] [285] [286] [287] [288] [289] [290] [291] [292] [293] [294] Underfull \hbox (badness 1360) in paragraph at lines 18960--18965 \T1/zi4/m/n/10 "none"\T1/ptm/m/n/10 . It is in-tended for the ver-sion of OpenS SL used, but not all Underfull \hbox (badness 10000) in paragraph at lines 18983--18989 [][][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / sslcerts . html$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / Underfull \hbox (badness 1127) in paragraph at lines 18983--18989 \T1/zi4/m/n/10 ssl-[]compared . html$[][] \T1/ptm/m/n/10 for more de-tails on S SL ver-sions. Nor-mally \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 used with \T1/phv /m/n/10 R [295] Underfull \hbox (badness 10000) in paragraph at lines 19056--19060 []\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory Underfull \hbox (badness 2460) in paragraph at lines 19056--19060 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/ 10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T 1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10 ' [296] [297] Underfull \hbox (badness 1509) in paragraph at lines 19191--19198 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 library \T1/ptm/m/n/10 is called with no \T1 /zi4/m/n/10 package \T1/ptm/m/n/10 or \T1/zi4/m/n/10 help \T1/ptm/m/n/10 ar-gu- ment, it lists all avail-able pack-ages Underfull \hbox (badness 1354) in paragraph at lines 19191--19198 \T1/ptm/m/n/10 Use \T1/zi4/m/n/10 .packages(all = TRUE) \T1/ptm/m/n/10 to ob-ta in just the names of all avail-able pack-ages, and Underfull \hbox (badness 1014) in paragraph at lines 19207--19212 []\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1 0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if [298] [299] [300] [301] [302] [303] [304] [305] [306] [307] [308] [309] Underfull \hbox (badness 1264) in paragraph at lines 19938--19943 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [310] [311] [312] [313] [314] [315] [316] [317] [318] [319] [320] Underfull \hbox (badness 10000) in paragraph at lines 20692--20694 []\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n /10 has the prop-erty that [321] [322] [323] [324] [325] [326] [327] [328] [329] [330] [331] [332] [333] [334] [335] [336] Underfull \hbox (badness 1077) in paragraph at lines 21690--21696 \T1/zi4/m/n/10 / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm/m/n/10 , [][ ]$\T1/zi4/m/n/10 http : / / tukaani . org / xz/$[][] \T1/ptm/m/n/10 and [][]$\T 1/zi4/m/n/10 https : / / en . wikipedia . [337] [338] [339] Underfull \hbox (badness 1484) in paragraph at lines 21851--21859 \T1/ptm/m/n/10 to al-low more (up to 3Gb). See [][]$\T1/zi4/m/n/10 https : / / www . microsoft . com / whdc / system / platform / [340] [341] [342] [343] Underfull \hbox (badness 2790) in paragraph at lines 22122--22125 []\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s ages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 22122--22125 \T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m es-sages, so can be sup-pressed by [344] [345] [346] [347] Underfull \hbox (badness 1194) in paragraph at lines 22403--22406 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 . It calls [348] [349] [350] [351] Underfull \hbox (badness 10000) in paragraph at lines 22609--22615 []\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 , \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond- ing Underfull \hbox (badness 5862) in paragraph at lines 22609--22615 \T1/ptm/m/n/10 list, i.e., \T1/zi4/m/n/10 names(as.list(env, all.names = TRUE)) \T1/ptm/m/n/10 which are also given by Underfull \hbox (badness 10000) in paragraph at lines 22619--22622 []\T1/ptm/m/n/10 It is pos-si-ble to up-date just part of the names at-tribute via the gen-eral rules: Underfull \hbox (badness 10000) in paragraph at lines 22619--22622 \T1/ptm/m/n/10 see the ex-am-ples. This works be-cause the ex-pres-sion there i s eval-u-ated as [352] [353] [354] [355] [356] [357] [358] [359] [360] [361] [362] [363] [364] [365] Underfull \hbox (badness 10000) in paragraph at lines 23544--23546 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m ore ef-fi-cient than [366] [367] [368] [369] Underfull \hbox (badness 1199) in paragraph at lines 23771--23777 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 is.numeric \T1/ptm/m/n/ 10 re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 if its ar-gu-ment is of [][]mode [][][] \T1/zi4/m/n/10 "numeric" Underfull \hbox (badness 2027) in paragraph at lines 23771--23777 \T1/ptm/m/n/10 ([][]type[][][] \T1/zi4/m/n/10 "double" \T1/ptm/m/n/10 or type \ T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 ) and not a fac-tor, and \T1/zi4/m/n/10 F ALSE \T1/ptm/m/n/10 oth-er-wise. That is, [370] [371] [372] [373] [374] [375] [376] [377] Underfull \hbox (badness 1038) in paragraph at lines 24336--24344 []\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/ 10 R \T1/ptm/m/n/10 starts up. Ini-tially Underfull \hbox (badness 1881) in paragraph at lines 24345--24348 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 24364--24366 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [378] Underfull \hbox (badness 10000) in paragraph at lines 24436--24446 []\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/zi4/m /n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to Underfull \hbox (badness 2142) in paragraph at lines 24447--24453 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able Underfull \hbox (badness 1968) in paragraph at lines 24460--24465 []\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 24470--24472 []\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v alue [379] [380] [381] Underfull \hbox (badness 10000) in paragraph at lines 24721--24727 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/ n/10 setRepositories[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 24721--24727 \T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "http://bioconductor.org"\T1/p tm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 24721--24727 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 "http://bioconductor.statistik.tu-dortmund.de"\T 1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 10000) in paragraph at lines 24734--24737 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][ ][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10 and [382] Underfull \hbox (badness 2689) in paragraph at lines 24758--24760 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see Underfull \hbox (badness 10000) in paragraph at lines 24790--24795 []\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/ 10 (and in-di-rectly Underfull \hbox (badness 1629) in paragraph at lines 24796--24807 \T1/ptm/m/n/10 si-ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi 4/m/n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use an d Underfull \hbox (badness 7203) in paragraph at lines 24808--24811 []\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/ n/10 and Underfull \hbox (badness 4084) in paragraph at lines 24818--24830 \T1/ptm/m/n/10 Pos-si-ble val-ues are \T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (t he de-fault ex-cept un-der a CRAN OS X build), Underfull \hbox (badness 10000) in paragraph at lines 24818--24830 \T1/zi4/m/n/10 "mac.binary."\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "mac.binary.maveric ks" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "both" \T1/ptm/m/n/10 (the de-fault for C RAN Underfull \hbox (badness 7397) in paragraph at lines 24818--24830 \T1/ptm/m/n/10 OS X builds). Win-dows uses \T1/zi4/m/n/10 "win.binary"\T1/ptm/m /n/10 . (\T1/zi4/m/n/10 "mac.binary.leopard" \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 24832--24839 []\T1/ptm/m/n/10 URLs of the repos-i-to-ries for use by [][]\T1/zi4/m/n/10 upda te.packages[][][]\T1/ptm/m/n/10 . De-faults to Underfull \hbox (badness 10000) in paragraph at lines 24832--24839 \T1/zi4/m/n/10 c(CRAN="@CRAN@")\T1/ptm/m/n/10 , a value that causes some util-i -ties to prompt for a Underfull \hbox (badness 6380) in paragraph at lines 24832--24839 \T1/ptm/m/n/10 CRAN mir-ror. To avoid this do set the CRAN mir-ror, by some-thi ng like Underfull \hbox (badness 1082) in paragraph at lines 24832--24839 \T1/zi4/m/n/10 local({r <- getOption("repos"); r["CRAN"] <- "http://my.local.cr an"; [383] [384] [385] [386] [387] Underfull \hbox (badness 10000) in paragraph at lines 25153--25157 []\T1/ptm/m/n/10 The outer prod-uct of the ar-rays \T1/zi4/m/n/10 X \T1/ptm/m/n /10 and \T1/zi4/m/n/10 Y \T1/ptm/m/n/10 is the ar-ray \T1/zi4/m/n/10 A \T1/ptm/ m/n/10 with di-men-sion Underfull \hbox (badness 10000) in paragraph at lines 25153--25157 \T1/zi4/m/n/10 c(dim(X), dim(Y)) \T1/ptm/m/n/10 where el-e-ment \T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] [388] [389] [390] [391] [392] Underfull \hbox (badness 1735) in paragraph at lines 25471--25475 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 paste() \T1/ptm/m/n/10 co-erces [][]\ T1/zi4/m/n/10 NA_character_[][][]\T1/ptm/m/n/10 , the char-ac-ter miss-ing valu e, to \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 which [393] [394] [395] [396] [397] [398] [399] [400] [401] [402] Underfull \hbox (badness 2726) in paragraph at lines 26030--26033 []\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di -cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put, see [403] [404] [405] [406] [407] [408] [409] [410] [411] [412] [413] [414] [415] Underfull \hbox (badness 1052) in paragraph at lines 26849--26854 []\T1/zi4/m/n/10 qr.X \T1/ptm/m/n/10 re-turns $\OML/cmm/b/it/10 X$\T1/ptm/m/n/1 0 , the orig-i-nal ma-trix from which the qr ob-ject was con-structed, pro-vide d [416] [417] [418] [419] [420] [421] [422] [423] [424] [425] [426] Underfull \hbox (badness 1533) in paragraph at lines 27577--27580 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [427] [428] Underfull \hbox (badness 1163) in paragraph at lines 27739--27749 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\ T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [429] [430] [431] [432] [433] [434] [435] [436] [437] [438] [439] [440] [441] [442] [443] [444] [445] [446] [447] [448] [449] [450] [451] [452] Underfull \hbox (badness 10000) in paragraph at lines 29241--29245 []\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n /10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 29241--29245 \T1/zi4/m/n/10 "(?[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t he matches are also re-turned by name. Underfull \hbox (badness 6188) in paragraph at lines 29263--29265 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p ubs . opengroup . org / onlinepubs / 9699919799 / [453] [454] [455] [456] [457] [458] [459] [460] [461] Underfull \hbox (badness 1655) in paragraph at lines 29808--29810 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm /m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for [462] [463] [464] [465] [466] [467] [468] [469] [470] [471] [472] Underfull \hbox (badness 10000) in paragraph at lines 30476--30480 []\T1/zi4/m/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my c ur-rent workspace', i.e., [473] [474] [475] Underfull \hbox (badness 2302) in paragraph at lines 30716--30723 []\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d e-fined as $[]$, Underfull \hbox (badness 2837) in paragraph at lines 30716--30723 \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non -missing Underfull \hbox (badness 2980) in paragraph at lines 30716--30723 \T1/ptm/m/n/10 val-ues. In the case \T1/zi4/m/n/10 center = TRUE\T1/ptm/m/n/10 , this is the same as the stan-dard de-vi-a-tion, Underfull \hbox (badness 2181) in paragraph at lines 30716--30723 \T1/ptm/m/n/10 but in gen-eral it is not. (To scale by the stan-dard de-vi-a-ti ons with-out cen-ter-ing, use [476] [477] [478] Underfull \hbox (badness 2261) in paragraph at lines 30870--30875 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i t ap-plies to all fields; oth-er-wise, if Underfull \hbox (badness 10000) in paragraph at lines 30897--30903 []\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac- ters [479] Underfull \hbox (badness 10000) in paragraph at lines 30973--30978 []\T1/ptm/m/n/10 Note that since \T1/zi4/m/n/10 sep \T1/ptm/m/n/10 is a sep-a-r a-tor and not a ter-mi-na-tor, read-ing a file by [480] [481] [482] [483] [484] [485] [486] [487] [488] [489] [490] [491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501] [502] [503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] [519] [520] [521] [522] Underfull \hbox (badness 1072) in paragraph at lines 33757--33761 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 33762--33766 []\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/ 10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 - -no-init-file\T1/ptm/m/n/10 ', [523] Underfull \hbox (badness 10000) in paragraph at lines 33790--33796 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 33790--33796 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 33790--33796 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in Underfull \hbox (badness 3343) in paragraph at lines 33803--33810 \T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 33803--33810 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 33803--33810 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [524] [525] [526] [527] [528] Underfull \hbox (badness 10000) in paragraph at lines 34094--34100 []\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form at \T1/ptm/m/n/10 meth-ods is Underfull \hbox (badness 1152) in paragraph at lines 34094--34100 \T1/zi4/m/n/10 "%Y-%m-%d %H:%M:%S" \T1/ptm/m/n/10 if any el-e-ment has a time c om-po-nent which is [529] [530] [531] [532] [533] [534] [535] [536] [537] [538] [539] [540] [541] [542] [543] [544] [545] [546] [547] [548] [549] [550] [551] [552] [553] [554] [555] [556] Underfull \hbox (badness 3333) in paragraph at lines 35877--35882 []\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi s may need to be matched ex-plic-itly: for ex-am-ple [557] [558] [559] [560] [561] [562] [563] [564] [565] [566] Underfull \hbox (badness 1472) in paragraph at lines 36497--36500 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee p their source in-clud-ing com-ments, see [567] [568] [569] [570] [571] [572] [573] [574] [575] [576] [577] Underfull \hbox (badness 2671) in paragraph at lines 37159--37162 []\T1/ptm/m/n/10 levels to re-move for all fac-tors in \T1/zi4/m/n/10 ...\T1/pt m/m/n/10 . If set to \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 , it im-plies [578] [579] [580] [581] [582] [583] Underfull \hbox (badness 10000) in paragraph at lines 37563--37566 [][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [ ][]$http : / / developer . r-[]project . org / [584] [585] Underfull \hbox (badness 10000) in paragraph at lines 37684--37688 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 getTaskCallbackNames [][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer . [586] Underfull \hbox (badness 10000) in paragraph at lines 37746--37750 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[ ][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer . [587] [588] [589] [590] [591] [592] [593] [594] [595] [596] [597] [598] [599] [600] [601] [602] [603] [604] [605] Underfull \hbox (badness 1990) in paragraph at lines 39041--39049 []\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e r-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 39041--39049 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less [606] [607] [608] [609] [610] Underfull \hbox (badness 1515) in paragraph at lines 39313--39318 []\T1/ptm/m/n/10 On most plat-forms `file' in-cludes sym-bolic links, fi-fos an d sock-ets. Prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 2.15.0 [611] [612] [613] Underfull \hbox (badness 1917) in paragraph at lines 39543--39550 []\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/ ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute [614] [615] [616] [617] [618] [619] [620] [621] [622] Underfull \hbox (badness 3668) in paragraph at lines 40128--40130 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di- ately, even if [623] [624] Underfull \hbox (badness 2401) in paragraph at lines 40233--40237 []\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [625] [626] [627] Underfull \hbox (badness 2111) in paragraph at lines 40402--40407 \T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n ot empty, these are used as col-umn names. Underfull \hbox (badness 6542) in paragraph at lines 40418--40423 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m /n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is [628] [629] [630] [631] [632] [633] [634] Underfull \hbox (badness 10000) in paragraph at lines 40863--40868 []\T1/ptm/m/n/10 This is a spe-cial case of rank-ing, but as a less gen-eral fu nc-tion than [][]\T1/zi4/m/n/10 rank[][][] Underfull \hbox (badness 10000) in paragraph at lines 40863--40868 \T1/ptm/m/n/10 is more suit-able to be made generic. The de-fault method is sim -i-lar to [635] [636] Underfull \hbox (badness 5417) in paragraph at lines 40955--40959 []\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [637] Underfull \hbox (badness 10000) in paragraph at lines 41016--41020 []\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard ' reg-exps, in-clud-ing el-e-ments named [638]) (./compiler-pkg.tex Chapter 2. [639] [640] [641] [642]) (./datasets-pkg.tex Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 12--14 []\T1/ptm/m/n/10 This pack-age con-tains a va-ri-ety of datasets. For a com-ple te list, use [643] [644] [645] [646] [647] [648] [649] [650] [651] [652] [653] [654] [655] [656] [657] [658] [659] [660] [661] [662] [663] [664] [665] [666] [667] [668] [669] [670] [671] [672] [673] [674] [675] [676] [677] [678] [679] [680] [681] [682] [683] [684] [685] [686] [687] [688] [689] Underfull \vbox (badness 1515) has occurred while \output is active [690] [691] [692] [693] [694] [695] [696] [697] [698] [699] [700] [701] [702] [703] [704] [705] [706] [707] [708] [709] Underfull \hbox (badness 6658) in paragraph at lines 3940--3942 []\T1/ptm/m/n/10 For some pho-tos of Methuse-lah Walk see [][]$\T1/zi4/m/n/10 h ttp : / / www . ltrr . arizona . edu / ~hallman / [710] Underfull \vbox (badness 10000) has occurred while \output is active [711] [712] [713] [714] Underfull \vbox (badness 10000) has occurred while \output is active [715] Underfull \vbox (badness 10000) has occurred while \output is active [716] [717] [718] [719] [720] [721] [722] [723]) (./grDevices-pkg.tex [724] Chapter 4. [725] [726] [727] [728] [729] [730] [731] [732] [733] [734] [735] [736] [737] [738] [739] [740] [741] Underfull \hbox (badness 5175) in paragraph at lines 1066--1068 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [742] [743] [744] [745] Underfull \hbox (badness 1852) in paragraph at lines 1263--1266 []\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col- ors that will be used in plot-ting, call-ing [746] [747] [748] Underfull \hbox (badness 1490) in paragraph at lines 1469--1474 \T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\ T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/ 10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and [749] Underfull \hbox (badness 2698) in paragraph at lines 1523--1526 []\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 if the de-vice does not sup-port cap-ture, oth-er-wise a ma-trix of color names (for [750] Underfull \hbox (badness 10000) in paragraph at lines 1592--1596 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , the func-tion also re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 when [751] [752] [753] [754] Underfull \hbox (badness 1325) in paragraph at lines 1875--1885 \T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/ 10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1 /ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 , [755] [756] Underfull \hbox (badness 10000) in paragraph at lines 1980--1982 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [757] [758] [759] Underfull \hbox (badness 6758) in paragraph at lines 2141--2144 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [760] [761] [762] [763] [764] [765] [766] [767] [768] Underfull \hbox (badness 10000) in paragraph at lines 2707--2708 [769] [770] [771] [772] [773] [774] [775] Underfull \hbox (badness 1152) in paragraph at lines 3145--3147 []\T1/ptm/m/n/10 A length two in-te-ger vec-tor \T1/zi4/m/n/10 nr, nc \T1/ptm/m /n/10 giv-ing the num-ber of rows and columns, ful-fill-ing [776] [777] [778] [779] [780] Underfull \hbox (badness 2856) in paragraph at lines 3465--3468 []\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv e a C in-te-ger for-mat such as Underfull \hbox (badness 2662) in paragraph at lines 3479--3481 []\T1/ptm/m/n/10 title string to em-bed as the `\T1/zi4/m/n/10 /Title\T1/ptm/m/ n/10 ' field in the file. De-faults to [781] [782] Underfull \hbox (badness 1173) in paragraph at lines 3595--3605 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 paper \T1/ptm/m/n/10 ar-gu-ment sets the `\ T1/zi4/m/n/10 /MediaBox\T1/ptm/m/n/10 ' en-try in the file, which de-faults to \T1/zi4/m/n/10 width \T1/ptm/m/n/10 by [783] [784] [785] [786] [787] [788] [789] [790] [791] [792] [793] Underfull \hbox (badness 1067) in paragraph at lines 4302--4309 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [794] [795] Underfull \hbox (badness 3364) in paragraph at lines 4463--4465 []\T1/ptm/m/n/10 The TIFF spec-i-fi-ca-tion, in-clud-ing ex-ten-sions, at [][]$ \T1/zi4/m/n/10 https : / / partners . adobe . com / public / [796] Underfull \hbox (badness 1789) in paragraph at lines 4540--4542 []\T1/ptm/m/n/10 title string to em-bed as the \T1/zi4/m/n/10 Title \T1/ptm/m/n /10 com-ment in the file. De-faults to [797] Underfull \hbox (badness 1377) in paragraph at lines 4590--4595 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [798] Underfull \hbox (badness 2671) in paragraph at lines 4617--4625 \T1/ptm/m/n/10 For use in this way you will prob-a-bly want to use [][]\T1/zi4/ m/n/10 setEPS[][][]() \T1/ptm/m/n/10 to set the de-faults as Underfull \hbox (badness 1418) in paragraph at lines 4666--4673 \T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4 /m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/ zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm /m/n/10 , Underfull \hbox (badness 2443) in paragraph at lines 4674--4683 \T1/ptm/m/n/10 PostScript de-vice is us-ing URW fonts, you will ob-tain ac-cess to more char-ac-ters and Underfull \hbox (badness 2653) in paragraph at lines 4674--4683 \T1/ptm/m/n/10 more ap-pro-pri-ate met-rics by us-ing these names. To make thes e eas-ier to re-mem-ber, Underfull \hbox (badness 1755) in paragraph at lines 4684--4686 []\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East Asian lan-guages -- see [799] [800] Underfull \hbox (badness 1057) in paragraph at lines 4795--4800 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \ T1/zi4/m/n/10 "rgb"\T1/ptm/m/n/10 ) (which is RGB+gray) and [801] Underfull \hbox (badness 7344) in paragraph at lines 4855--4857 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [802] [803] Underfull \hbox (badness 2035) in paragraph at lines 4979--4988 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 4979--4988 \T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/ n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 4979--4988 \T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 , [804] Underfull \hbox (badness 10000) in paragraph at lines 5048--5055 []\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4 /m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu / Underfull \hbox (badness 2189) in paragraph at lines 5048--5055 \T1/zi4/m/n/10 chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Lunde's CJK V re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly . [805] [806] [807] Underfull \hbox (badness 1546) in paragraph at lines 5186--5194 []\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T 1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/ n/10 , [808] Underfull \hbox (badness 1648) in paragraph at lines 5263--5267 []\T1/ptm/m/n/10 title for the Quartz win-dow (ap-plies to on-screen out-put on ly), de-fault [809] [810] [811] [812] [813] [814] [815] Underfull \hbox (badness 10000) in paragraph at lines 5686--5689 []\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red /green/blue) into HSV space [816] Underfull \vbox (badness 3803) has occurred while \output is active [817] [818] [819] [820] [821] Underfull \hbox (badness 1189) in paragraph at lines 6083--6085 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [822] [823] Underfull \hbox (badness 10000) in paragraph at lines 6181--6183 []\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK lan-guages and [824] [825] [826] [827] Underfull \hbox (badness 3780) in paragraph at lines 6472--6478 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1 0 "AvantGarde"\T1/ptm/m/n/10 , [828] [829] [830] Underfull \hbox (badness 2680) in paragraph at lines 6668--6670 []\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of [831] [832] [833]) (./graphics-pkg.tex [834] Chapter 5. [835] [836] [837] [838] [839] [840] [841] [842] [843] [844] [845] Underfull \hbox (badness 10000) in paragraph at lines 683--690 []\T1/zi4/m/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/p tm/m/n/10 in-ter-face to the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/pt m/m/n/10 in [846] [847] [848] [849] Underfull \vbox (badness 3803) has occurred while \output is active [850] [851] [852] [853] [854] Underfull \hbox (badness 4634) in paragraph at lines 1246--1249 [][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n /10 , [855] [856] [857] [858] [859] [860] [861] [862] [863] [864] [865] [866] [867] [868] [869] [870] [871] Underfull \hbox (badness 1009) in paragraph at lines 2277--2284 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [872] [873] [874] [875] [876] [877] [878] [879] [880] [881] [882] [883] [884] [885] [886] [887] [888] [889] [890] [891] [892] [893] Underfull \vbox (badness 10000) has occurred while \output is active [894] Underfull \vbox (badness 10000) has occurred while \output is active [895] [896] [897] [898] Underfull \hbox (badness 1867) in paragraph at lines 3901--3905 []\T1/ptm/m/n/10 vector of back-ground (fill) col-ors for the open plot sym-bol s given by [899] [900] [901] [902] [903] [904] [905] Underfull \hbox (badness 1924) in paragraph at lines 4348--4353 []\T1/ptm/m/n/10 a func-tion which in-di-cates what should hap-pen when the dat a con-tain [906] Underfull \hbox (badness 2529) in paragraph at lines 4379--4382 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used: see [907] [908] [909] [910] [911] Underfull \hbox (badness 10000) in paragraph at lines 4729--4735 []\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n /10 (width, height) \T1/ptm/m/n/10 in user co-or-di-nate units. Underfull \hbox (badness 5908) in paragraph at lines 4729--4735 \T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin" ) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that [912] Underfull \hbox (badness 10000) in paragraph at lines 4860--4863 [913] Syntax Error: Couldn't find trailer dictionary Syntax Error: Invalid XRef entry Syntax Error (1762): Missing 'endstream' or incorrect stream length [914 ] Underfull \hbox (badness 10000) in paragraph at lines 4921--4923 Syntax Error: Couldn't find trailer dictionary Syntax Error: Invalid XRef entry Syntax Error (2987): Missing 'endstream' or incorrect stream length [915 ] [916] Underfull \hbox (badness 10000) in paragraph at lines 5111--5113 []\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2 :6\T1/ptm/m/n/10 ) cor-re-spond to [917] [918] [919] [920] [921] Underfull \vbox (badness 10000) has occurred while \output is active [922] [923] [924] [925] [926] [927] [928] [929] [930] [931] [932] [933] [934] [935] [936] [937] [938] [939] [940] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6581--6582 [][] Syntax Error: Couldn't find trailer dictionary Syntax Error: Invalid XRef entry Syntax Error (1294): Missing 'endstream' or incorrect stream length Syntax Error (4194): Missing 'endstream' or incorrect stream length [941 ] [942] Underfull \vbox (badness 10000) has occurred while \output is active [943] [944] [945] [946] [947] [948] [949] [950] [951] [952] Underfull \hbox (badness 1048) in paragraph at lines 7290--7295 \T1/ptm/m/n/10 avoided (see the Warn-ings sec-tion be-low). Split-screen mode i s ex-ited by the com-mand [953] Underfull \hbox (badness 1038) in paragraph at lines 7406--7409 []\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d rawn be-tween the point \T1/zi4/m/n/10 (x0[i], y0[i]) \T1/ptm/m/n/10 and the po int [954] [955] [956] [957] [958] [959] [960] [961] [962] [963] [964] [965] [966] [967] [968] [969] [970] [971] [972] [973] [974] Underfull \hbox (badness 6691) in paragraph at lines 8625--8628 []\T1/ptm/m/n/10 The main ti-tle (on top) us-ing font and size (char-ac-ter ex- pan-sion) Underfull \hbox (badness 2799) in paragraph at lines 8628--8630 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font and size \T1/zi4/m/n/10 par ("font.sub") \T1/ptm/m/n/10 and color [975] [976]pdfTeX warning (ext4): destination with the same identifier (name{Rf n.units}) has been already used, duplicate ignored \relax l.8710 \HeaderA{units}{Graphical Units}{units} [977] [978] [979] [980]) (./grid-pkg.tex Chapter 6. Underfull \vbox (badness 10000) has occurred while \output is active [981] [982] [983] [984] [985] [986] Underfull \hbox (badness 2680) in paragraph at lines 390--393 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1 /zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio n of [987] [988] [989] [990] [991] [992] [993] [994] [995] [996] Underfull \hbox (badness 4279) in paragraph at lines 970--979 [][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m /n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 unit[][][]\T1/ptm/m/n/10 , [997] [998] [999] [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009] [1010] [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020] [1021] [1022] [1023] [1024] [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033] [1034] [1035] [1036] [1037] [1038] [1039] Underfull \vbox (badness 3803) has occurred while \output is active [1040] [1041] [1042] [1043] [1044] [1045] [1046] [1047] [1048] [1049] [1050] [1051] [1052] [1053] Underfull \hbox (badness 1067) in paragraph at lines 4340--4343 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1054] [1055] [1056] [1057] Underfull \hbox (badness 7256) in paragraph at lines 4583--4585 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] [1066] [1067] [1068] [1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] [1078] Underfull \hbox (badness 10000) in paragraph at lines 5854--5860 \T1/ptm/m/n/10 and to spec-ify the min-i-mum or max-i-mum of a list of unit ob- jects (e.g., [1079] [1080] [1081] [1082] [1083] [1084] [1085] [1086] Underfull \hbox (badness 7649) in paragraph at lines 6324--6327 []\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by do-ing some-thing like [1087] [1088] [1089] [1090]) (./methods-pkg.tex Chapter 7. [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100] [1101] [1102] [1103] [1104] [1105] [1106] [1107] [1108] [1109] [1110] Underfull \hbox (badness 2237) in paragraph at lines 1454--1456 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \ T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package "\T1/ptm/m/n/10 , also of class [1111] [1112] [1113] [1114] [1115] [1116] [1117] [1118] [1119] Underfull \hbox (badness 10000) in paragraph at lines 2050--2055 []\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c an be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 2050--2055 \T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1 0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the [1120] [1121] [1122] [1123] [1124] [1125] [1126] [1127] Underfull \hbox (badness 10000) in paragraph at lines 2655--2658 []\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o b-jects of class [1128] [1129] Underfull \hbox (badness 1132) in paragraph at lines 2795--2799 []\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1 0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re -turned re-sult is in [1130] Underfull \hbox (badness 1033) in paragraph at lines 2827--2832 \T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store s the [1131] [1132] [1133] [1134] [1135] [1136] [1137] Underfull \hbox (badness 1102) in paragraph at lines 3339--3341 []\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na me of the pack-age (with-out the ex-tra-ne-ous [1138] [1139] [1140] [1141] [1142] Underfull \hbox (badness 10000) in paragraph at lines 3667--3672 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these classes takes spe-cial ar-gu-ments Underfull \hbox (badness 10000) in paragraph at lines 3675--3684 []\T1/ptm/m/n/10 The [1143] [1144] [1145] [1146] [1147] [1148] Underfull \vbox (badness 10000) has occurred while \output is active [1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] Underfull \hbox (badness 1436) in paragraph at lines 4580--4583 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "SealedMethodDefinition" \T1/ptm/m/n/ 10 is cre-ated by a call to [][]\T1/zi4/m/n/10 setMethod[][][] \T1/ptm/m/n/10 w ith ar-gu-ment Underfull \hbox (badness 1769) in paragraph at lines 4609--4615 []\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4609--4615 \T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T 1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by [1157] [1158] [1159] [1160] [1161] [1162] Underfull \vbox (badness 2452) has occurred while \output is active [1163] [1164] Underfull \vbox (badness 10000) has occurred while \output is active [1165] [1166] Underfull \hbox (badness 1092) in paragraph at lines 5281--5288 \T1/ptm/m/n/10 names cor-re-spond-ing to some or all of the for-mal ar-gu-ments . In the pre-vi-ous ex-am-ple, Underfull \hbox (badness 1117) in paragraph at lines 5281--5288 \T1/ptm/m/n/10 if se-lect-ing class \T1/zi4/m/n/10 "track" \T1/ptm/m/n/10 for \ T1/zi4/m/n/10 x\T1/ptm/m/n/10 , find-ing that the se-lec-tion was an-other meth -ods list and Underfull \hbox (badness 4036) in paragraph at lines 5329--5332 []\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10 the method to use in re-sponse to a [1167] [1168] [1169] [1170] [1171] Underfull \hbox (badness 1087) in paragraph at lines 5649--5654 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1172] [1173] [1174] [1175] Underfull \hbox (badness 2221) in paragraph at lines 5878--5883 []\T1/ptm/m/n/10 Two op-tional method names are in-ter-preted spe-cially, \T1/z i4/m/n/10 initialize \T1/ptm/m/n/10 and [1176] [1177] [1178] [1179] [1180] Underfull \hbox (badness 1675) in paragraph at lines 6343--6349 \T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1181] [1182] [1183] [1184] Underfull \vbox (badness 10000) has occurred while \output is active [1185] [1186]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4} ) has been already used, duplicate ignored \relax l.6820 \aliasA{S4}{S3Part}{S4} [1187] [1188] [1189] [1190]pdfTeX warning (ext4) : destination with the same identifier (name{Rfn.Complex}) has been already use d, duplicate ignored \relax l.7096 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate ignored \relax l.7098 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) has been already used, duplicate igno red \relax l.7099 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination wi th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7101 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor ed \relax l.7102 \aliasA{Summary}{S4groupGeneric}{Summary} [1191] Underfull \hbox (badness 2050) in paragraph at lines 7163--7167 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1192] [1193] [1194] Underfull \hbox (badness 1286) in paragraph at lines 7348--7350 []\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal ly [1195] [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203] [1204] [1205] [1206] [1207] [1208] [1209] [1210] [1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218] [1219] [1220] [1221] [1222] [1223] [1224] [1225] [1226] [1227] [1228] Underfull \hbox (badness 1852) in paragraph at lines 9759--9763 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1229] [1230] [1231] [1232]) (./parallel-pkg.tex Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 15--17 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4 /m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[ ][][]: see [1233] [1234] [1235] [1236] [1237] [1238] [1239] [1240] [1241] [1242] [1243] [1244] [1245] [1246] [1247] [1248] [1249] [1250] [1251] [1252] Underfull \hbox (badness 3386) in paragraph at lines 1246--1249 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R andom.seed \T1/ptm/m/n/10 when the [1253] [1254]) (./splines-pkg.tex Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1255] [1256] [1257] [1258] [1259] [1260] [1261] [1262] [1263] [1264] [1265] [1266] [1267] [1268] [1269]) (./stats-pkg.tex [1270] Chapter 10. [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] [1281] [1282] [1283] Underfull \hbox (badness 1412) in paragraph at lines 844--846 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm \T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for [1284] [1285] [1286] [1287] [1288] [1289] [1290] [1291] Underfull \hbox (badness 2503) in paragraph at lines 1325--1328 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1292] [1293] [1294] Underfull \hbox (badness 10000) in paragraph at lines 1504--1508 []\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov", "lm") \T1/ptm/m/n/ 10 or for mul-ti-ple re-sponses of class [1295] [1296] [1297] [1298] [1299] [1300] [1301] [1302] [1303] [1304] [1305] Underfull \hbox (badness 3965) in paragraph at lines 2164--2166 []\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val id for [1306] [1307] [1308] [1309] [1310] Underfull \hbox (badness 3965) in paragraph at lines 2506--2508 []\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val id for [1311] [1312] [1313] [1314] [1315] [1316] [1317] [1318] [1319] [1320] [1321] [1322] [1323] Underfull \hbox (badness 2503) in paragraph at lines 3323--3326 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1324] [1325] [1326] [1327] [1328] [1329] [1330] [1331] [1332] [1333] [1334] [1335] [1336] [1337] [1338] [1339] [1340] [1341] [1342] [1343] Underfull \hbox (badness 3989) in paragraph at lines 4548--4555 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1344] [1345] [1346] [1347] [1348] [1349] [1350] [1351] [1352] [1353] Underfull \hbox (badness 2556) in paragraph at lines 5149--5152 []\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/ ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p tm/m/n/10 . For Underfull \hbox (badness 2932) in paragraph at lines 5166--5168 []\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se- quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is given by [1354] [1355] [1356] [1357] Underfull \hbox (badness 1142) in paragraph at lines 5407--5419 \T1/ptm/m/n/10 For \T1/zi4/m/n/10 cov()\T1/ptm/m/n/10 , a non-Pearson method is un-usual but avail-able for the sake of com-plete-ness. [1358] [1359] Underfull \hbox (badness 2503) in paragraph at lines 5546--5550 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1360] Underfull \hbox (badness 1168) in paragraph at lines 5607--5612 []\T1/ptm/m/n/10 For Spear-man's test, p-values are com-puted us-ing al-go-rith m AS 89 for $\OML/cmm/m/it/10 n < \OT1/cmr/m/n/10 1290$ \T1/ptm/m/n/10 and [1361] [1362] [1363] [1364] [1365] [1366] [1367] Underfull \hbox (badness 8132) in paragraph at lines 6049--6054 \T1/ptm/m/n/10 then \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is a den-dro-gram of the sa me graph struc-ture as \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and for each node, [1368] [1369] [1370] [1371] [1372] Underfull \hbox (badness 7081) in paragraph at lines 6324--6327 []\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 10000) in paragraph at lines 6328--6330 []\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also [1373] [1374] [1375] [1376] [1377] Underfull \vbox (badness 3803) has occurred while \output is active [1378] [1379] [1380] [1381] [1382] [1383] [1384] [1385] Underfull \hbox (badness 10000) in paragraph at lines 7136--7139 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T 1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the [1386] [1387] Underfull \hbox (badness 10000) in paragraph at lines 7273--7276 []\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/zi4/m/n/10 ht tps : / / cran . r-[]project . org / web / views / [1388] [1389] [1390] [1391] Underfull \vbox (badness 3803) has occurred while \output is active [1392] [1393] [1394] [1395] [1396] [1397] [1398] [1399] [1400] [1401] [1402] [1403] [1404] [1405] [1406] [1407] [1408] [1409] [1410] [1411] [1412] Underfull \hbox (badness 2626) in paragraph at lines 8771--8774 []\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1413] Underfull \hbox (badness 2503) in paragraph at lines 8871--8875 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1414] [1415] [1416] [1417] [1418] Overfull \hbox (6.88992pt too wide) in paragraph at lines 9205--9207 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Fligner-Killeen test of homogeneity of variances"\T1/ptm/m/n/10 . [1419] [1420] [1421] [1422] [1423] [1424] [1425] [1426] [1427] [1428] [1429] [1430] [1431] [1432] [1433] Underfull \hbox (badness 4518) in paragraph at lines 10132--10137 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1434] [1435] [1436] [1437] Underfull \hbox (badness 2142) in paragraph at lines 10474--10477 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ [1438] Underfull \hbox (badness 1253) in paragraph at lines 10493--10496 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][ ]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it- er-a-tion. Hence, [1439] Underfull \hbox (badness 1708) in paragraph at lines 10555--10559 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1440] [1441] [1442] [1443] [1444] [1445] Underfull \hbox (badness 1694) in paragraph at lines 10951--10954 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to Underfull \hbox (badness 1867) in paragraph at lines 10970--10979 \T1/ptm/m/n/10 in the row case. If ei-ther is miss-ing, as by de-fault, then th e or-der-ing of the cor-re- [1446] [1447] [1448] [1449] [1450] [1451] [1452] [1453]pdfTeX warning (ext4): d estination with the same identifier (name{Rfn.hat}) has been already used, dupl icate ignored \relax l.11417 \aliasA{hat}{influence.measures}{hat} [1454] [1455] Underfull \hbox (badness 1484) in paragraph at lines 11540--11542 []\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1456] [1457] [1458] [1459] [1460] [1461] [1462] [1463] [1464] Underfull \hbox (badness 4441) in paragraph at lines 12098--12100 []\T1/ptm/m/n/10 vector of dif-fer-enc-ing co-ef-fi-cients, so an ARMA model is fit-ted to Underfull \hbox (badness 10000) in paragraph at lines 12105--12107 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa ult[][][] \T1/ptm/m/n/10 when [1465] [1466] [1467] [1468] [1469] [1470] Underfull \hbox (badness 2894) in paragraph at lines 12439--12443 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1471] [1472] [1473] [1474] [1475] [1476] [1477] [1478] [1479] [1480] [1481] Underfull \hbox (badness 4518) in paragraph at lines 13134--13139 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1482] [1483] [1484] [1485] [1486] [1487] [1488] [1489] [1490] [1491] Underfull \hbox (badness 4518) in paragraph at lines 13781--13786 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1492] [1493] Underfull \hbox (badness 10000) in paragraph at lines 13919--13923 []\T1/ptm/m/n/10 Only for the (de-fault) case \T1/zi4/m/n/10 (surface = Underfull \hbox (badness 1199) in paragraph at lines 13926--13928 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if \T1/zi4/m/n/10 family \T1/ptm/m/n/10 is [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504] [1505] [1506] [1507] [1508] [1509] [1510] [1511] Underfull \hbox (badness 2503) in paragraph at lines 14990--14994 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1512] [1513] [1514] [1515] [1516] [1517] [1518] [1519] Underfull \hbox (badness 1418) in paragraph at lines 15499--15505 []\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response \T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(, "offset") \T1 /ptm/m/n/10 and [1520] [1521] [1522] [1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530] [1531] [1532] [1533] [1534] [1535] [1536] [1537] [1538] [1539] [1540] [1541] [1542] [1543] [1544] [1545] Underfull \hbox (badness 2359) in paragraph at lines 17123--17125 []\T1/ptm/m/n/10 Douglas M. Bates and Saikat De-bRoy: David M. Gay for the For- tran code used by [1546] [1547] Underfull \vbox (badness 10000) has occurred while \output is active [1548] Underfull \vbox (badness 10000) has occurred while \output is active [1549] [1550] [1551] [1552] [1553] [1554] [1555] [1556] [1557] [1558] [1559] [1560] [1561] Underfull \hbox (badness 1377) in paragraph at lines 18034--18039 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 18039--18042 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 1184) in paragraph at lines 18052--18056 \T1/ptm/m/n/10 value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + reltol ) \T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 18060--18064 []\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \ T1/ptm/m/n/10 meth-ods if [1562] [1563] [1564] Underfull \vbox (badness 10000) has occurred while \output is active [1565] [1566] [1567] [1568] [1569] [1570] [1571] Underfull \hbox (badness 1337) in paragraph at lines 18676--18679 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1572] [1573] [1574] [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] [1584] Underfull \hbox (badness 5563) in paragraph at lines 19406--19408 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , add to al-read y ex-ist-ing plot. Only valid for Underfull \hbox (badness 1194) in paragraph at lines 19409--19412 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1585] [1586] [1587] [1588] [1589] [1590] Underfull \hbox (badness 2503) in paragraph at lines 19776--19779 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1591] Underfull \hbox (badness 10000) in paragraph at lines 19803--19805 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1 /ptm/m/n/10 or [1592] [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601] [1602] [1603] [1604] [1605] [1606] [1607] Underfull \hbox (badness 10000) in paragraph at lines 20803--20809 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][ ][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 , [1608] [1609] [1610] [1611] [1612] [1613] [1614] [1615] [1616] [1617] [1618] [1619] [1620] [1621] [1622] [1623] [1624] [1625] [1626] [1627] [1628] [1629] [1630] Underfull \hbox (badness 1337) in paragraph at lines 22138--22144 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1631] [1632] [1633] [1634] [1635] [1636] [1637] [1638] [1639] [1640] [1641] [1642] Underfull \hbox (badness 10000) in paragraph at lines 22931--22934 []\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by [1643] [1644] [1645] [1646] [1647] [1648] [1649] [1650] [1651] Underfull \hbox (badness 10000) in paragraph at lines 23508--23511 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run med(x, k) \T1/ptm/m/n/10 sim-ply has [1652] Underfull \hbox (badness 3690) in paragraph at lines 23559--23563 [][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's end point rule and is called by de-fault from [1653] [1654] [1655] [1656] [1657] [1658] [1659] [1660] Underfull \hbox (badness 3439) in paragraph at lines 24029--24035 [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSasympO rig[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSbiexp[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 SSfol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSfpl[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 SSgompertz[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 SSlogis[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSmicmen[][][]\T1/ptm/m/n/1 0 , [1661] [1662] [1663] [1664] [1665] [1666] [1667] [1668] [1669] Underfull \hbox (badness 10000) in paragraph at lines 24577--24582 []\T1/ptm/m/n/10 integer or [][]\T1/zi4/m/n/10 function[][][] \T1/ptm/m/n/10 gi v-ing the num-ber of knots to use when [1670] [1671] [1672] [1673] [1674] [1675] [1676] [1677] [1678] [1679] [1680] [1681] [1682] [1683] [1684] Underfull \vbox (badness 3803) has occurred while \output is active [1685] [1686] Underfull \hbox (badness 3514) in paragraph at lines 25593--25598 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1687] Underfull \hbox (badness 3514) in paragraph at lines 25655--25660 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1688] Underfull \hbox (badness 3514) in paragraph at lines 25712--25717 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1689] Underfull \hbox (badness 3514) in paragraph at lines 25773--25779 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1690] [1691] [1692] [1693] Underfull \hbox (badness 3514) in paragraph at lines 25986--25991 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion Underfull \hbox (badness 3514) in paragraph at lines 26042--26047 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1694] Underfull \hbox (badness 3514) in paragraph at lines 26099--26104 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1695] Underfull \hbox (badness 3514) in paragraph at lines 26154--26159 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1696] [1697] Underfull \hbox (badness 6691) in paragraph at lines 26223--26228 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p tm/m/n/10 . It is the value of the ex-pres-sion [1698] [1699] [1700] [1701] [1702] [1703] [1704] [1705] Underfull \hbox (badness 10000) in paragraph at lines 26747--26750 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex- Underfull \hbox (badness 10000) in paragraph at lines 26747--26750 \T1/ptm/m/n/10 trac-tion, which should be odd. If \T1/zi4/m/n/10 NULL\T1/ptm/m/ n/10 , the de-fault, [1706] [1707] [1708] [1709] [1710] [1711] [1712] [1713] [1714] [1715] Underfull \hbox (badness 5431) in paragraph at lines 27353--27355 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1716] [1717] [1718] [1719] Underfull \hbox (badness 5431) in paragraph at lines 27563--27566 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1720] [1721] [1722] [1723] [1724] Underfull \hbox (badness 1337) in paragraph at lines 27875--27879 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1725] [1726] Underfull \hbox (badness 10000) in paragraph at lines 27992--27995 []\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/ 10 ; cur-rently ex-cept for \T1/zi4/m/n/10 rt()\T1/ptm/m/n/10 , only for [1727] [1728] [1729] Underfull \hbox (badness 1616) in paragraph at lines 28175--28178 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1730] [1731] [1732] [1733] [1734] [1735] [1736] [1737] [1738] [1739] [1740] [1741] [1742] [1743] [1744] [1745] [1746] [1747] [1748] Underfull \hbox (badness 10000) in paragraph at lines 29302--29306 []\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect [1749] [1750] [1751] Underfull \vbox (badness 10000) has occurred while \output is active [1752] [1753] [1754] Underfull \hbox (badness 1337) in paragraph at lines 29666--29670 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1755] [1756] [1757] [1758] [1759] [1760] [1761] [1762] Underfull \hbox (badness 1337) in paragraph at lines 30150--30154 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1763] Underfull \hbox (badness 5161) in paragraph at lines 30243--30245 []\T1/ptm/m/n/10 an es-ti-mate of the lo-ca-tion pa-ram-e-ter. (Only present if ar-gu-ment [1764] [1765] [1766] [1767] [1768] [1769] Underfull \hbox (badness 10000) in paragraph at lines 30607--30612 []\T1/ptm/m/n/10 There is a \T1/zi4/m/n/10 summary \T1/ptm/m/n/10 method for co n-tin-gency ta-ble ob-jects cre-ated by \T1/zi4/m/n/10 table \T1/ptm/m/n/10 or [1770] [1771] [1772]) (./stats4-pkg.tex Chapter 11. [1773] [1774] [1775] [1776] [1777] [1778]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup licate ignored \relax l.407 ...Package \pkg{stats4}}{show.Rdash.methods} [1779] [1780] [1781] [1782]) (./tcltk-pkg.tex Chapter 12. [1783] [1784] [1785] [1786] [1787] [1788] [1789] Underfull \vbox (badness 10000) has occurred while \output is active [1790] Underfull \vbox (badness 10000) has occurred while \output is active [1791] Underfull \hbox (badness 1546) in paragraph at lines 664--671 []\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing any Tk or Tcl com-mand by sim-ply run-ning [1792] [1793] [1794] [1795] [1796] [1797] [1798] [1799] [1800] [1801] [1802] Underfull \hbox (badness 3375) in paragraph at lines 1407--1410 [][][]\T1/zi4/m/n/10 select.list[][][] \T1/ptm/m/n/10 (a text ver-sion ex-cept on Win-dows and the OS X GUI), [][]\T1/zi4/m/n/10 menu[][][] \T1/ptm/m/n/10 (wh ose [1803]) (./tools-pkg.tex [1804] Chapter 13. [1805] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1806] Underfull \hbox (badness 3039) in paragraph at lines 164--167 []\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1807] [1808] Underfull \hbox (badness 1308) in paragraph at lines 285--298 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 285--298 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 formatMastersthesis\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm /m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma tTechreport \T1/ptm/m/n/10 and [1809] [1810] Underfull \hbox (badness 3039) in paragraph at lines 389--391 []\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine to use. Over-rides any [1811] [1812] [1813] [1814] [1815] [1816] [1817] [1818] [1819] [1820] [1821] Underfull \hbox (badness 1635) in paragraph at lines 1050--1052 []\T1/ptm/m/n/10 Delete files in the tem-po-rary di-rec-tory? This op-tion is i g-nored when [1822] Underfull \hbox (badness 4441) in paragraph at lines 1126--1136 \T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe n-den-cies (de- [1823] Underfull \hbox (badness 1014) in paragraph at lines 1148--1150 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1154--1156 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous Underfull \hbox (badness 10000) in paragraph at lines 1185--1188 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1185--1188 \T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 , [1824] [1825] [1826] Underfull \hbox (badness 10000) in paragraph at lines 1348--1350 []\T1/ptm/m/n/10 Re-save PDF files (es-pe-cially vi-gnettes) more com-pactly. S up-port func-tion for [1827] [1828] [1829] Underfull \hbox (badness 7981) in paragraph at lines 1518--1522 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of Underfull \hbox (badness 1082) in paragraph at lines 1524--1526 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see [1830] [1831] [1832] [1833]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ignored \relax l.1721 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [1834] [1835] Underfull \hbox (badness 5726) in paragraph at lines 1847--1852 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/n/10 De pendsList \T1/ptm/m/n/10 ob-ject Underfull \hbox (badness 7221) in paragraph at lines 1847--1852 \T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo r in-stance if there was [1836] [1837] [1838] [1839] [1840] [1841] [1842] [1843] Underfull \hbox (badness 7981) in paragraph at lines 2323--2329 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1844] [1845] [1846] [1847] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/n' instead on input line 2607. [1848] [1849] [1850] [1851] Underfull \hbox (badness 1424) in paragraph at lines 2844--2846 []\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t or of links, as re-turned by [1852] [1853] [1854] [1855] [1856] [1857] [1858] [1859] [1860] [1861] [1862] Underfull \hbox (badness 10000) in paragraph at lines 3539--3541 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [1863] [1864] [1865] [1866] [1867] [1868] Underfull \hbox (badness 1838) in paragraph at lines 3919--3925 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 3919--3925 \T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [1869] [1870] Underfull \hbox (badness 5726) in paragraph at lines 3999--4004 []\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/sl/10 TR UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/sl/10 DependsList \T1/ptm/m/n/10 ob-ject Underfull \hbox (badness 7221) in paragraph at lines 3999--4004 \T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo r in-stance if there was [1871] [1872] Underfull \hbox (badness 1688) in paragraph at lines 4142--4154 []\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to be used in the `\T 1/zi4/m/sl/10 PACKAGES\T1/ptm/m/n/10 ' and [1873] [1874] [1875] [1876]) (./utils-pkg.tex Chapter 14. [1877] Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ', [1878] [1879] Underfull \hbox (badness 1454) in paragraph at lines 197--200 []\T1/ptm/m/n/10 logical in-di-cat-ing if the search should be case-insensitive , \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 by de- Underfull \hbox (badness 1540) in paragraph at lines 213--216 []\T1/zi4/m/sl/10 find \T1/ptm/m/n/10 is a dif-fer-ent user in-ter-face for the same task as \T1/zi4/m/sl/10 apropos\T1/ptm/m/n/10 . How-ever, by de-fault [1880] [1881] [1882] [1883] [1884] [1885] Underfull \hbox (badness 10000) in paragraph at lines 543--549 []\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1 0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 543--549 \T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the [1886] Underfull \hbox (badness 5847) in paragraph at lines 656--662 []\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to se-lect which of the pack-ages on the repos-i-to- Underfull \hbox (badness 4229) in paragraph at lines 656--662 \T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi 4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as [1887] Underfull \hbox (badness 3861) in paragraph at lines 724--729 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/ 10 "License_is_FOSS"\T1/ptm/m/n/10 , [1888] [1889] [1890] [1891] [1892] Underfull \vbox (badness 10000) has occurred while \output is active [1893] [1894] [1895] [1896] [1897] Underfull \hbox (badness 1371) in paragraph at lines 1320--1322 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [1898] [1899] [1900] [1901] [1902] [1903] [1904] Underfull \hbox (badness 2057) in paragraph at lines 1812--1814 []\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th is func-tion is in-voked for its side ef-fect of up-dat-ing [1905] [1906] Underfull \hbox (badness 10000) in paragraph at lines 1913--1915 []\T1/ptm/m/n/10 One can in-clude an auto-generated pack-age ci-ta-tion in the `\T1/zi4/m/sl/10 CITATION\T1/ptm/m/n/10 ' file via [1907] Underfull \hbox (badness 5189) in paragraph at lines 2003--2005 []\T1/ptm/m/n/10 A list of keys that have been pre-vi-ously cited, to be used w hen [1908] [1909] [1910] [1911] Underfull \hbox (badness 1661) in paragraph at lines 2221--2228 []\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sim-pli-fied to an [][]\T1/zi4/m/sl/10 array[][][] \T1/ptm/m/n/10 (typ-i- Underfull \hbox (badness 1990) in paragraph at lines 2238--2241 []\T1/ptm/m/n/10 a [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4 /m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m /n/10 ar-gu-ment above. In the lat-ter case, the iden-tity [1912] [1913] [1914] [1915] [1916] [1917] [1918] [1919] [1920] [1921] [1922] [1923] [1924] [1925] [1926] Underfull \hbox (badness 1412) in paragraph at lines 3235--3239 []\T1/ptm/m/n/10 The \T1/zi4/m/sl/10 "libcurl" \T1/ptm/m/n/10 and \T1/zi4/m/sl/ 10 "wget" \T1/ptm/m/n/10 meth-ods fol-low `\T1/zi4/m/sl/10 http://\T1/ptm/m/n/1 0 ' and `\T1/zi4/m/sl/10 https://\T1/ptm/m/n/10 ' redi-rec-tions: the [1927] Underfull \hbox (badness 1430) in paragraph at lines 3259--3267 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the \T1/zi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the Underfull \hbox (badness 1231) in paragraph at lines 3302--3308 []\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers via en-vi-ron-ment vari-able [1928] [1929] [1930] [1931] [1932] [1933] [1934] [1935] [1936] [1937] [1938] [1939] [1940] [1941]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.4123 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.format.1}) has been already used, dupl icate ignored \relax l.4123 ...mat Unordered and Ordered Lists}{format} [1942] [1943] [1944] [1945] [1946] [1947] [1948] [1949] [1950] [1951] [1952] [1953] [1954] [1955] [1956] Underfull \hbox (badness 1371) in paragraph at lines 5073--5075 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [1957] Underfull \hbox (badness 1502) in paragraph at lines 5162--5167 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 5162--5167 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [1958] [1959] [1960] Underfull \hbox (badness 10000) in paragraph at lines 5335--5344 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, [1961] Underfull \hbox (badness 2150) in paragraph at lines 5398--5401 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [1962] [1963] Underfull \hbox (badness 3118) in paragraph at lines 5535--5537 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [1964] Underfull \hbox (badness 2409) in paragraph at lines 5568--5572 []\T1/ptm/m/n/10 To in-stall a source pack-age with com-piled code only for the sub-architecture used by [1965] Underfull \hbox (badness 1325) in paragraph at lines 5676--5680 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/sl/10 available.packag es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able [1966] Underfull \hbox (badness 10000) in paragraph at lines 5759--5762 []\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to be passed Underfull \hbox (badness 10000) in paragraph at lines 5759--5762 \T1/ptm/m/n/10 to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a source pac k-age in-stall. E.g., [1967] Underfull \hbox (badness 3219) in paragraph at lines 5832--5839 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/sl/ 10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 5832--5839 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 5832--5839 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by [1968] Underfull \hbox (badness 10000) in paragraph at lines 5912--5917 [][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/ 10 , [1969] [1970] [1971] [1972] [1973] [1974] [1975] [1976] [1977] [1978] [1979] [1980] [1981] [1982] [1983] [1984] [1985] [1986] [1987] [1988] Underfull \hbox (badness 10000) in paragraph at lines 7124--7126 []\T1/zi4/m/sl/10 packageVersion() \T1/ptm/m/n/10 is a con-ve-nience short-cut, al-low-ing things like Underfull \hbox (badness 2310) in paragraph at lines 7129--7134 []\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [1989] [1990] [1991] [1992] [1993] [1994] [1995] [1996] [1997] Underfull \hbox (badness 1789) in paragraph at lines 7679--7681 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [1998] [1999] [2000] [2001] [2002] [2003] [2004] [2005] [2006] [2007] [2008] [2009] Underfull \hbox (badness 1097) in paragraph at lines 8504--8507 []\T1/ptm/m/n/10 The name \T1/zi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b e used on Win-dows, in which case [2010] [2011] Underfull \hbox (badness 3000) in paragraph at lines 8640--8645 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 read.t able[][][]\T1/ptm/m/n/10 ; [2012] [2013] [2014] [2015] [2016] [2017] [2018] [2019] [2020] Underfull \hbox (badness 2134) in paragraph at lines 9222--9227 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 write. table[][][]\T1/ptm/m/n/10 ; [2021] [2022] [2023] [2024] [2025] [2026] [2027] Underfull \hbox (badness 2469) in paragraph at lines 9655--9659 []\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia , The Free En-cy-clo-pe-dia. Underfull \hbox (badness 3428) in paragraph at lines 9655--9659 [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / w / index . php ? title = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac- [2028] [2029] [2030] [2031] [2032] [2033] Underfull \hbox (badness 10000) in paragraph at lines 9996--9998 []\T1/ptm/m/n/10 For \T1/zi4/m/sl/10 type = "txt"\T1/ptm/m/n/10 , [][]\T1/zi4/m /sl/10 file.show[][][] \T1/ptm/m/n/10 is used. [][]\T1/zi4/m/sl/10 vignette[][] []\T1/ptm/m/n/10 s are nicely viewed via [2034] [2035] Underfull \hbox (badness 2150) in paragraph at lines 10172--10174 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/ ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emac s / manual / [2036] [2037] [2038] Underfull \hbox (badness 10000) in paragraph at lines 10350--10354 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n ow taken from the en-vi-ron-ment vari-able [2039] Underfull \hbox (badness 10000) in paragraph at lines 10381--10387 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a [2040] Underfull \hbox (badness 2096) in paragraph at lines 10499--10502 []\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing whether PNG fig-ures should be gen-er-ated. Ig-nored if Underfull \hbox (badness 1527) in paragraph at lines 10503--10506 []\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing whether JPEG fig-ures should be gen-er-ated. Ig-nored if [2041] Underfull \hbox (badness 1009) in paragraph at lines 10569--10580 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If [2042] [2043] [2044] [2045] [2046] Underfull \hbox (badness 3780) in paragraph at lines 10868--10872 []\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1 /zi4/m/sl/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via Underfull \hbox (badness 2635) in paragraph at lines 10884--10887 []\T1/ptm/m/n/10 Repository `\T1/zi4/m/sl/10 CRAN\T1/ptm/m/n/10 ' is treated sp e-cially: the value is taken from the cur-rent set-ting of [2047] [2048] [2049] [2050] [2051] [2052] Underfull \hbox (badness 5970) in paragraph at lines 11258--11261 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive [2053] [2054] [2055] Underfull \hbox (badness 10000) in paragraph at lines 11437--11439 []\T1/ptm/m/n/10 Options other than \T1/zi4/m/sl/10 memory = "none" \T1/ptm/m/n /10 ap-ply only to files pro-duced by [2056] [2057] [2058] [2059] [2060] [2061] Underfull \hbox (badness 10000) in paragraph at lines 11838--11841 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / pubs . opengroup . org / Underfull \hbox (badness 2245) in paragraph at lines 11838--11841 \T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9 2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX [2062] [2063] [2064] [2065] [2066] [2067] [2068] [2069] [2070] Underfull \hbox (badness 10000) in paragraph at lines 12368--12370 []\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/sl/10 destdir \T1/ptm/m/n/10 and \ T1/zi4/m/sl/10 dependencies \T1/ptm/m/n/10 to be passed to Underfull \hbox (badness 1052) in paragraph at lines 12371--12373 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. See [2071] Underfull \hbox (badness 10000) in paragraph at lines 12401--12406 []\T1/ptm/m/n/10 For how the list of suit-able avail-able pack-ages is de-ter-m ined see Underfull \hbox (badness 10000) in paragraph at lines 12401--12406 [][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 . \T1/zi4/m/sl/10 av ailable = NULL \T1/ptm/m/n/10 make a call to Underfull \hbox (badness 10000) in paragraph at lines 12430--12433 [][][]\T1/zi4/m/sl/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.package s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n /10 , [2072] [2073] [2074] [2075] Overfull \hbox (25.86961pt too wide) in paragraph at lines 12669--12672 [][][]\T1/zi4/m/sl/10 browseVignettes[][][] \T1/ptm/m/n/10 for an HTML-based vi -gnette browser; [][]\T1/zi4/m/sl/10 RShowDoc[][][](, package = "") [2076] [2077] Underfull \hbox (badness 1454) in paragraph at lines 12747--12751 []\T1/ptm/m/n/10 the char-ac-ter(s) to print at the end of each line (row). For ex-am-ple, [2078] Underfull \hbox (badness 10000) in paragraph at lines 12817--12819 []\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec- tion [2079] [2080] [2081]) [2082] No file fullrefman.ind. (./fullrefman.aux) Package rerunfilecheck Warning: File `fullrefman.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Font Warning: Some font shapes were not available, defaults substituted. ) (see the transcript file for additional information)pdfTeX warning (dest): name {Rfn.write.matrix} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.dgTMatrix} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.glht} has been referenced but does not exist, r eplaced by a fixed one pdfTeX warning (dest): name{Rfn.survreg} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.coxph} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.stepAIC} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.rinvGauss} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.gamma.shape} has been referenced but does not e xist, replaced by a fixed one pdfTeX 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Transcript written on fullrefman.log. This is makeindex, version 2.15 [TeX Live 2015] (kpathsea + Thai support). Scanning input file fullrefman.idx................done (12900 entries accepted, 33 rejected). Sorting entries......................................................................................................................................done (196192 comparisons). Generating output file fullrefman.ind................done (12825 lines written, 43 warnings). Output written in fullrefman.ind. Transcript written in fullrefman.ilg. This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./fullrefman.tex LaTeX2e <2015/10/01> patch level 2 Babel <3.9m> and hyphenation patterns for 2 languages loaded. 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Underfull \hbox (badness 4595) in paragraph at lines 40--43 []\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h igh-est, for [1] [2] Underfull \hbox (badness 1960) in paragraph at lines 141--149 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1 /ptm/m/n/10 such that \T1/zi4/m/n/10 1 - x != 1\T1/ptm/m/n/10 . Underfull \hbox (badness 10000) in paragraph at lines 141--149 \T1/ptm/m/n/10 It equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1 /ptm/m/n/10 if Underfull \hbox (badness 10000) in paragraph at lines 141--149 \T1/zi4/m/n/10 double.base \T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.roundin g \T1/ptm/m/n/10 is 0; oth-er-wise, it is Underfull \hbox (badness 1668) in paragraph at lines 152--159 []\T1/ptm/m/n/10 the largest nor-mal-ized floating-point num-ber. Typ-i-cally, it is equal to [3] [4] [5] Underfull \hbox (badness 1178) in paragraph at lines 296--300 []\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/ 10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues [6] Underfull \hbox (badness 3977) in paragraph at lines 381--384 []\T1/ptm/m/n/10 logical: should \T1/zi4/m/n/10 minlength \T1/ptm/m/n/10 be ob- served strictly? Note that set-ting [7] [8] Underfull \hbox (badness 2556) in paragraph at lines 511--517 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ', [9] [10] [11] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [12] [13] [14] [15] [16] [17] [18] Underfull \hbox (badness 2671) in paragraph at lines 1122--1125 []\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec- tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis t of length [19] [20] [21] [22] Underfull \hbox (badness 4072) in paragraph at lines 1339--1345 []\T1/zi4/m/n/10 %% \T1/ptm/m/n/10 in-di-cates \T1/zi4/m/n/10 x mod y \T1/ptm/m /n/10 and \T1/zi4/m/n/10 %/% \T1/ptm/m/n/10 in-di-cates in-te-ger di-vi-sion. I t is guar-an-teed that [23] [24] [25] [26] [27] [28] [29] Overfull \hbox (26.88089pt too wide) in paragraph at lines 1849--1849 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [30] [31] [32] Underfull \hbox (badness 10000) in paragraph at lines 2034--2036 []\T1/ptm/m/n/10 a date-time ob-ject, or some-thing which can be co-erced by [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] Underfull \hbox (badness 10000) in paragraph at lines 3532--3534 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] Underfull \hbox (badness 2521) in paragraph at lines 4728--4730 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] Underfull \hbox (badness 2096) in paragraph at lines 5945--5958 []\T1/ptm/m/n/10 New restarts for \T1/zi4/m/n/10 withRestarts \T1/ptm/m/n/10 ca n be spec-i-fied in sev-eral ways. The sim-plest is in [94] [95] [96] Overfull \hbox (58.35893pt too wide) in paragraph at lines 6146--6149 []\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa ult", "internal", "wininet", "libcurl")\T1/ptm/m/n/10 : [97] [98] Underfull \hbox (badness 10000) in paragraph at lines 6290--6293 []\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo st gen-eral form (from RFC1738) is [99] [100] Underfull \hbox (badness 1442) in paragraph at lines 6451--6457 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \ T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re- move a Underfull \hbox (badness 1248) in paragraph at lines 6451--6457 \T1/ptm/m/n/10 Byte Or-der Mark if present (which it of-ten is for files and we b-pages gen-er-ated by Mi- Underfull \hbox (badness 2080) in paragraph at lines 6451--6457 \T1/ptm/m/n/10 crosoft ap-pli-ca-tions). If a BOM is re-quired (it is not rec-o m-mended) when writ-ing it [101] Underfull \hbox (badness 3568) in paragraph at lines 6512--6519 \T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as [102] [103] Underfull \vbox (badness 10000) has occurred while \output is active [104] [105] [106] [107] [108] [109] [110] [111] Underfull \hbox (badness 2096) in paragraph at lines 7149--7153 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [112] Underfull \hbox (badness 4595) in paragraph at lines 7206--7209 []\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h igh-est, for [113] Underfull \hbox (badness 3000) in paragraph at lines 7242--7244 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0, \T1/zi4/m/n/10 getOption("OutDec") \T1/ptm/m/n/10 is con-sulted when la-bels are con-structed for Underfull \hbox (badness 2351) in paragraph at lines 7267--7270 [][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T 1/ptm/m/n/10 , [114] [115] [116] [117] Underfull \hbox (badness 10000) in paragraph at lines 7517--7528 []\T1/zi4/m/n/10 data.frame \T1/ptm/m/n/10 con-verts each of its ar-gu-ments to a data frame by call-ing [118] Underfull \hbox (badness 4479) in paragraph at lines 7589--7598 [][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[] [][] \T1/ptm/m/n/10 (for the col-umn names), Underfull \hbox (badness 2469) in paragraph at lines 7589--7598 [][]\T1/zi4/m/n/10 [.data.frame[][][] \T1/ptm/m/n/10 for sub-set-ting meth-ods, [][]\T1/zi4/m/n/10 Math.data.frame[][][] \T1/ptm/m/n/10 etc, about \T1/ptm/m/i t/10 Group \T1/ptm/m/n/10 meth-ods for [119] [120] [121] [122] [123] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] Underfull \hbox (badness 1394) in paragraph at lines 9200--9205 []\T1/ptm/m/n/10 Subtraction of date-time ob-jects gives an ob-ject of this cla ss, by call-ing \T1/zi4/m/n/10 difftime \T1/ptm/m/n/10 with [144] [145] [146] [147] [148] Underfull \hbox (badness 1052) in paragraph at lines 9537--9542 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 dontCheck \T1/ptm/m/n/10 func-tion is the s ame as [][]\T1/zi4/m/n/10 identity[][][]\T1/ptm/m/n/10 , but is in-ter-preted b y \T1/zi4/m/n/10 R CMD check Underfull \hbox (badness 1231) in paragraph at lines 9537--9542 \T1/ptm/m/n/10 code anal-y-sis as a di-rec-tive to sup-press check-ing of \T1/z i4/m/n/10 x\T1/ptm/m/n/10 . Cur-rently this is only used by [149] [150] Underfull \hbox (badness 1735) in paragraph at lines 9675--9679 \T1/zi4/m/n/10 754-[]2008$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Double _ precision$[][]\T1/ptm/m/n/10 , [][]$\T1/ zi4/m/n/10 https : / / en . wikipedia . [151] [152] [153] [154] [155] [156] Underfull \hbox (badness 2150) in paragraph at lines 10079--10082 []\T1/ptm/m/n/10 logical in-di-cat-ing if du-pli-ca-tion should be con-sid-ered from the re-verse [157] Underfull \hbox (badness 6396) in paragraph at lines 10093--10101 []\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len t method def-i-ni-tions for Underfull \hbox (badness 2409) in paragraph at lines 10134--10141 []\T1/ptm/m/n/10 Except for fac-tors, log-i-cal and raw vec-tors the de-fault \ T1/zi4/m/n/10 nmax = NA \T1/ptm/m/n/10 is equiv-a-lent to [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] Underfull \hbox (badness 4569) in paragraph at lines 11178--11182 []\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been passed as an ar-gu-ment Underfull \hbox (badness 2401) in paragraph at lines 11178--11182 \T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller' s en-vi-ron-ment, i.e., one needs [174] [175] [176] [177] [178] [179] [180] [181] Underfull \hbox (badness 2698) in paragraph at lines 11754--11763 []\T1/ptm/m/n/10 Both \T1/zi4/m/n/10 $ \T1/ptm/m/n/10 and \T1/zi4/m/n/10 [[ \T1 /ptm/m/n/10 can be ap-plied to en-vi-ron-ments. Only char-ac-ter in-dices are a l-lowed Underfull \hbox (badness 4341) in paragraph at lines 11754--11763 \T1/ptm/m/n/10 and no par-tial match-ing is done. The se-man-tics of these op-e r-a-tions are those of [182] [183] [184] [185] [186] [187] [188] [189] [190] [191] Underfull \hbox (badness 6236) in paragraph at lines 12398--12401 []\T1/ptm/m/n/10 For \T1/zi4/m/n/10 iconv \T1/ptm/m/n/10 this will give the im- ple-men-ta-tion as well as the ver-sion, for ex-am-ple [192] [193] [194] [195] [196] [197] Underfull \hbox (badness 2253) in paragraph at lines 12776--12778 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [198] Underfull \hbox (badness 1565) in paragraph at lines 12847--12851 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/ 10 , and [199] Underfull \hbox (badness 10000) in paragraph at lines 12891--12893 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m /n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with [200] [201] Underfull \hbox (badness 1466) in paragraph at lines 13032--13035 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/ zi4/m/n/10 file.copy \T1/ptm/m/n/10 and [202] [203] Underfull \hbox (badness 10000) in paragraph at lines 13140--13144 [][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [ ][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 13151--13154 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [204] [205] [206] [207] Underfull \hbox (badness 3965) in paragraph at lines 13403--13407 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] Underfull \hbox (badness 4429) in paragraph at lines 14133--14136 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] \T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for [219] Underfull \hbox (badness 10000) in paragraph at lines 14225--14227 []\T1/ptm/m/n/10 If you set \T1/zi4/m/n/10 format \T1/ptm/m/n/10 it over-rides the set-ting of \T1/zi4/m/n/10 mode\T1/ptm/m/n/10 , so Underfull \hbox (badness 10000) in paragraph at lines 14231--14235 []\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b ers on the dec-i-mal point, so [220] Underfull \hbox (badness 10000) in paragraph at lines 14273--14277 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt m/m/n/10 3.2.0: for use Underfull \hbox (badness 4156) in paragraph at lines 14273--14277 \T1/ptm/m/n/10 within [][]\T1/zi4/m/n/10 print[][][] \T1/ptm/m/n/10 meth-ods in pack-ages which might be used with ear-lier ver-sions: use [221] Underfull \vbox (badness 3803) has occurred while \output is active [222] [223] [224] [225] [226] [227] [228] [229] Underfull \hbox (badness 2452) in paragraph at lines 14853--14857 []\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 14853--14857 \T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_ WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and [230] [231] [232] Underfull \hbox (badness 1092) in paragraph at lines 15026--15031 [][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t he DLL has been loaded us-ing [233] [234] [235] [236] Underfull \hbox (badness 6741) in paragraph at lines 15274--15278 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \ T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10 , [237] [238] [239] [240] Underfull \hbox (badness 1867) in paragraph at lines 15580--15587 []\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][] [] (or char-ac-ter string for [241] [242] [243] [244] Underfull \vbox (badness 10000) has occurred while \output is active [245] [246] Underfull \hbox (badness 3679) in paragraph at lines 15960--15962 []\T1/ptm/m/n/10 The TRE li-brary of Ville Lau-rikari ([][]$\T1/zi4/m/n/10 http : / / laurikari . net / tre/$[][]\T1/ptm/m/n/10 ) is used ex-cept for [247] [248] [249] [250] [251] [252] [253] Underfull \hbox (badness 1478) in paragraph at lines 16440--16443 []\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [254] [255] [256] [257] Underfull \hbox (badness 10000) in paragraph at lines 16693--16695 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 http : / / www . unicode . org / reports / tr35 / [258] [259] [260] [261] [262] [263] [264] [265] [266] Underfull \hbox (badness 1442) in paragraph at lines 17256--17258 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see [267] Underfull \hbox (badness 2452) in paragraph at lines 17348--17364 [][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 , [268] [269] [270] [271] [272] [273] [274] Underfull \hbox (badness 1248) in paragraph at lines 17756--17759 []\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n /10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/ m/n/10 , [275] [276] [277] [278] Underfull \hbox (badness 4739) in paragraph at lines 18012--18014 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [279] [280] [281] [282] [283] [284] [285] [286] [287] [288] [289] [290] [291] [292] [293] [294] Underfull \hbox (badness 1360) in paragraph at lines 18960--18965 \T1/zi4/m/n/10 "none"\T1/ptm/m/n/10 . It is in-tended for the ver-sion of OpenS SL used, but not all Underfull \hbox (badness 10000) in paragraph at lines 18983--18989 [][][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / sslcerts . html$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / Underfull \hbox (badness 1127) in paragraph at lines 18983--18989 \T1/zi4/m/n/10 ssl-[]compared . html$[][] \T1/ptm/m/n/10 for more de-tails on S SL ver-sions. Nor-mally \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 used with \T1/phv /m/n/10 R [295] Underfull \hbox (badness 10000) in paragraph at lines 19056--19060 []\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory Underfull \hbox (badness 2460) in paragraph at lines 19056--19060 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/ 10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T 1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10 ' [296] [297] Underfull \hbox (badness 1509) in paragraph at lines 19191--19198 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 library \T1/ptm/m/n/10 is called with no \T1 /zi4/m/n/10 package \T1/ptm/m/n/10 or \T1/zi4/m/n/10 help \T1/ptm/m/n/10 ar-gu- ment, it lists all avail-able pack-ages Underfull \hbox (badness 1354) in paragraph at lines 19191--19198 \T1/ptm/m/n/10 Use \T1/zi4/m/n/10 .packages(all = TRUE) \T1/ptm/m/n/10 to ob-ta in just the names of all avail-able pack-ages, and Underfull \hbox (badness 1014) in paragraph at lines 19207--19212 []\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1 0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if [298] [299] [300] [301] [302] [303] [304] [305] [306] [307] [308] [309] Underfull \hbox (badness 1264) in paragraph at lines 19938--19943 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [310] [311] [312] [313] [314] [315] [316] [317] [318] [319] [320] Underfull \hbox (badness 10000) in paragraph at lines 20692--20694 []\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n /10 has the prop-erty that [321] [322] [323] [324] [325] [326] [327] [328] [329] [330] [331] [332] [333] [334] [335] [336] Underfull \hbox (badness 1077) in paragraph at lines 21690--21696 \T1/zi4/m/n/10 / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm/m/n/10 , [][ ]$\T1/zi4/m/n/10 http : / / tukaani . org / xz/$[][] \T1/ptm/m/n/10 and [][]$\T 1/zi4/m/n/10 https : / / en . wikipedia . [337] [338] [339] Underfull \hbox (badness 1484) in paragraph at lines 21851--21859 \T1/ptm/m/n/10 to al-low more (up to 3Gb). See [][]$\T1/zi4/m/n/10 https : / / www . microsoft . com / whdc / system / platform / [340] [341] [342] [343] Underfull \hbox (badness 2790) in paragraph at lines 22122--22125 []\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s ages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 22122--22125 \T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m es-sages, so can be sup-pressed by [344] [345] [346] [347] Underfull \hbox (badness 1194) in paragraph at lines 22403--22406 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 . It calls [348] [349] [350] [351] Underfull \hbox (badness 10000) in paragraph at lines 22609--22615 []\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 , \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond- ing Underfull \hbox (badness 5862) in paragraph at lines 22609--22615 \T1/ptm/m/n/10 list, i.e., \T1/zi4/m/n/10 names(as.list(env, all.names = TRUE)) \T1/ptm/m/n/10 which are also given by Underfull \hbox (badness 10000) in paragraph at lines 22619--22622 []\T1/ptm/m/n/10 It is pos-si-ble to up-date just part of the names at-tribute via the gen-eral rules: Underfull \hbox (badness 10000) in paragraph at lines 22619--22622 \T1/ptm/m/n/10 see the ex-am-ples. This works be-cause the ex-pres-sion there i s eval-u-ated as [352] [353] [354] [355] [356] [357] [358] [359] [360] [361] [362] [363] [364] [365] Underfull \hbox (badness 10000) in paragraph at lines 23544--23546 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m ore ef-fi-cient than [366] [367] [368] [369] Underfull \hbox (badness 1199) in paragraph at lines 23771--23777 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 is.numeric \T1/ptm/m/n/ 10 re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 if its ar-gu-ment is of [][]mode [][][] \T1/zi4/m/n/10 "numeric" Underfull \hbox (badness 2027) in paragraph at lines 23771--23777 \T1/ptm/m/n/10 ([][]type[][][] \T1/zi4/m/n/10 "double" \T1/ptm/m/n/10 or type \ T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 ) and not a fac-tor, and \T1/zi4/m/n/10 F ALSE \T1/ptm/m/n/10 oth-er-wise. That is, [370] [371] [372] [373] [374] [375] [376] [377] Underfull \hbox (badness 1038) in paragraph at lines 24336--24344 []\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/ 10 R \T1/ptm/m/n/10 starts up. Ini-tially Underfull \hbox (badness 1881) in paragraph at lines 24345--24348 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 24364--24366 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [378] Underfull \hbox (badness 10000) in paragraph at lines 24436--24446 []\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/zi4/m /n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to Underfull \hbox (badness 2142) in paragraph at lines 24447--24453 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able Underfull \hbox (badness 1968) in paragraph at lines 24460--24465 []\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 24470--24472 []\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v alue [379] [380] [381] Underfull \hbox (badness 10000) in paragraph at lines 24721--24727 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/ n/10 setRepositories[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 24721--24727 \T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "http://bioconductor.org"\T1/p tm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 24721--24727 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 "http://bioconductor.statistik.tu-dortmund.de"\T 1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 10000) in paragraph at lines 24734--24737 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][ ][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10 and [382] Underfull \hbox (badness 2689) in paragraph at lines 24758--24760 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see Underfull \hbox (badness 10000) in paragraph at lines 24790--24795 []\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/ 10 (and in-di-rectly Underfull \hbox (badness 1629) in paragraph at lines 24796--24807 \T1/ptm/m/n/10 si-ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi 4/m/n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use an d Underfull \hbox (badness 7203) in paragraph at lines 24808--24811 []\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/ n/10 and Underfull \hbox (badness 4084) in paragraph at lines 24818--24830 \T1/ptm/m/n/10 Pos-si-ble val-ues are \T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (t he de-fault ex-cept un-der a CRAN OS X build), Underfull \hbox (badness 10000) in paragraph at lines 24818--24830 \T1/zi4/m/n/10 "mac.binary."\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "mac.binary.maveric ks" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "both" \T1/ptm/m/n/10 (the de-fault for C RAN Underfull \hbox (badness 7397) in paragraph at lines 24818--24830 \T1/ptm/m/n/10 OS X builds). Win-dows uses \T1/zi4/m/n/10 "win.binary"\T1/ptm/m /n/10 . (\T1/zi4/m/n/10 "mac.binary.leopard" \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 24832--24839 []\T1/ptm/m/n/10 URLs of the repos-i-to-ries for use by [][]\T1/zi4/m/n/10 upda te.packages[][][]\T1/ptm/m/n/10 . De-faults to Underfull \hbox (badness 10000) in paragraph at lines 24832--24839 \T1/zi4/m/n/10 c(CRAN="@CRAN@")\T1/ptm/m/n/10 , a value that causes some util-i -ties to prompt for a Underfull \hbox (badness 6380) in paragraph at lines 24832--24839 \T1/ptm/m/n/10 CRAN mir-ror. To avoid this do set the CRAN mir-ror, by some-thi ng like Underfull \hbox (badness 1082) in paragraph at lines 24832--24839 \T1/zi4/m/n/10 local({r <- getOption("repos"); r["CRAN"] <- "http://my.local.cr an"; [383] [384] [385] [386] [387] Underfull \hbox (badness 10000) in paragraph at lines 25153--25157 []\T1/ptm/m/n/10 The outer prod-uct of the ar-rays \T1/zi4/m/n/10 X \T1/ptm/m/n /10 and \T1/zi4/m/n/10 Y \T1/ptm/m/n/10 is the ar-ray \T1/zi4/m/n/10 A \T1/ptm/ m/n/10 with di-men-sion Underfull \hbox (badness 10000) in paragraph at lines 25153--25157 \T1/zi4/m/n/10 c(dim(X), dim(Y)) \T1/ptm/m/n/10 where el-e-ment \T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] [388] [389] [390] [391] [392] Underfull \hbox (badness 1735) in paragraph at lines 25471--25475 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 paste() \T1/ptm/m/n/10 co-erces [][]\ T1/zi4/m/n/10 NA_character_[][][]\T1/ptm/m/n/10 , the char-ac-ter miss-ing valu e, to \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 which [393] [394] [395] [396] [397] [398] [399] [400] [401] [402] Underfull \hbox (badness 2726) in paragraph at lines 26030--26033 []\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di -cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put, see [403] [404] [405] [406] [407] [408] [409] [410] [411] [412] [413] [414] [415] Underfull \hbox (badness 1052) in paragraph at lines 26849--26854 []\T1/zi4/m/n/10 qr.X \T1/ptm/m/n/10 re-turns $\OML/cmm/b/it/10 X$\T1/ptm/m/n/1 0 , the orig-i-nal ma-trix from which the qr ob-ject was con-structed, pro-vide d [416] [417] [418] [419] [420] [421] [422] [423] [424] [425] [426] Underfull \hbox (badness 1533) in paragraph at lines 27577--27580 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [427] [428] Underfull \hbox (badness 1163) in paragraph at lines 27739--27749 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\ T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [429] [430] [431] [432] [433] [434] [435] [436] [437] [438] [439] [440] [441] [442] [443] [444] [445] [446] [447] [448] [449] [450] [451] [452] Underfull \hbox (badness 10000) in paragraph at lines 29241--29245 []\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n /10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 29241--29245 \T1/zi4/m/n/10 "(?[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t he matches are also re-turned by name. Underfull \hbox (badness 6188) in paragraph at lines 29263--29265 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p ubs . opengroup . org / onlinepubs / 9699919799 / [453] [454] [455] [456] [457] [458] [459] [460] [461] Underfull \hbox (badness 1655) in paragraph at lines 29808--29810 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm /m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for [462] [463] [464] [465] [466] [467] [468] [469] [470] [471] [472] Underfull \hbox (badness 10000) in paragraph at lines 30476--30480 []\T1/zi4/m/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my c ur-rent workspace', i.e., [473] [474] [475] Underfull \hbox (badness 2302) in paragraph at lines 30716--30723 []\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d e-fined as $[]$, Underfull \hbox (badness 2837) in paragraph at lines 30716--30723 \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non -missing Underfull \hbox (badness 2980) in paragraph at lines 30716--30723 \T1/ptm/m/n/10 val-ues. In the case \T1/zi4/m/n/10 center = TRUE\T1/ptm/m/n/10 , this is the same as the stan-dard de-vi-a-tion, Underfull \hbox (badness 2181) in paragraph at lines 30716--30723 \T1/ptm/m/n/10 but in gen-eral it is not. (To scale by the stan-dard de-vi-a-ti ons with-out cen-ter-ing, use [476] [477] [478] Underfull \hbox (badness 2261) in paragraph at lines 30870--30875 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i t ap-plies to all fields; oth-er-wise, if Underfull \hbox (badness 10000) in paragraph at lines 30897--30903 []\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac- ters [479] Underfull \hbox (badness 10000) in paragraph at lines 30973--30978 []\T1/ptm/m/n/10 Note that since \T1/zi4/m/n/10 sep \T1/ptm/m/n/10 is a sep-a-r a-tor and not a ter-mi-na-tor, read-ing a file by [480] [481] [482] [483] [484] [485] [486] [487] [488] [489] [490] [491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501] [502] [503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] [519] [520] [521] [522] Underfull \hbox (badness 1072) in paragraph at lines 33757--33761 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 33762--33766 []\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/ 10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 - -no-init-file\T1/ptm/m/n/10 ', [523] Underfull \hbox (badness 10000) in paragraph at lines 33790--33796 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 33790--33796 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 33790--33796 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in Underfull \hbox (badness 3343) in paragraph at lines 33803--33810 \T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 33803--33810 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 33803--33810 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [524] [525] [526] [527] [528] Underfull \hbox (badness 10000) in paragraph at lines 34094--34100 []\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form at \T1/ptm/m/n/10 meth-ods is Underfull \hbox (badness 1152) in paragraph at lines 34094--34100 \T1/zi4/m/n/10 "%Y-%m-%d %H:%M:%S" \T1/ptm/m/n/10 if any el-e-ment has a time c om-po-nent which is [529] [530] [531] [532] [533] [534] [535] [536] [537] [538] [539] [540] [541] [542] [543] [544] [545] [546] [547] [548] [549] [550] [551] [552] [553] [554] [555] [556] Underfull \hbox (badness 3333) in paragraph at lines 35877--35882 []\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi s may need to be matched ex-plic-itly: for ex-am-ple [557] [558] [559] [560] [561] [562] [563] [564] [565] [566] Underfull \hbox (badness 1472) in paragraph at lines 36497--36500 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee p their source in-clud-ing com-ments, see [567] [568] [569] [570] [571] [572] [573] [574] [575] [576] [577] Underfull \hbox (badness 2671) in paragraph at lines 37159--37162 []\T1/ptm/m/n/10 levels to re-move for all fac-tors in \T1/zi4/m/n/10 ...\T1/pt m/m/n/10 . If set to \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 , it im-plies [578] [579] [580] [581] [582] [583] Underfull \hbox (badness 10000) in paragraph at lines 37563--37566 [][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [ ][]$http : / / developer . r-[]project . org / [584] [585] Underfull \hbox (badness 10000) in paragraph at lines 37684--37688 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 getTaskCallbackNames [][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer . [586] Underfull \hbox (badness 10000) in paragraph at lines 37746--37750 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[ ][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer . [587] [588] [589] [590] [591] [592] [593] [594] [595] [596] [597] [598] [599] [600] [601] [602] [603] [604] [605] Underfull \hbox (badness 1990) in paragraph at lines 39041--39049 []\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e r-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 39041--39049 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less [606] [607] [608] [609] [610] Underfull \hbox (badness 1515) in paragraph at lines 39313--39318 []\T1/ptm/m/n/10 On most plat-forms `file' in-cludes sym-bolic links, fi-fos an d sock-ets. Prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 2.15.0 [611] [612] [613] Underfull \hbox (badness 1917) in paragraph at lines 39543--39550 []\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/ ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute [614] [615] [616] [617] [618] [619] [620] [621] [622] Underfull \hbox (badness 3668) in paragraph at lines 40128--40130 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di- ately, even if [623] [624] Underfull \hbox (badness 2401) in paragraph at lines 40233--40237 []\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [625] [626] [627] Underfull \hbox (badness 2111) in paragraph at lines 40402--40407 \T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n ot empty, these are used as col-umn names. Underfull \hbox (badness 6542) in paragraph at lines 40418--40423 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m /n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is [628] [629] [630] [631] [632] [633] [634] Underfull \hbox (badness 10000) in paragraph at lines 40863--40868 []\T1/ptm/m/n/10 This is a spe-cial case of rank-ing, but as a less gen-eral fu nc-tion than [][]\T1/zi4/m/n/10 rank[][][] Underfull \hbox (badness 10000) in paragraph at lines 40863--40868 \T1/ptm/m/n/10 is more suit-able to be made generic. The de-fault method is sim -i-lar to [635] [636] Underfull \hbox (badness 5417) in paragraph at lines 40955--40959 []\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [637] Underfull \hbox (badness 10000) in paragraph at lines 41016--41020 []\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard ' reg-exps, in-clud-ing el-e-ments named [638]) (./compiler-pkg.tex Chapter 2. [639] [640] [641] [642]) (./datasets-pkg.tex Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 12--14 []\T1/ptm/m/n/10 This pack-age con-tains a va-ri-ety of datasets. For a com-ple te list, use [643] [644] [645] [646] [647] [648] [649] [650] [651] [652] [653] [654] [655] [656] [657] [658] [659] [660] [661] [662] [663] [664] [665] [666] [667] [668] [669] [670] [671] [672] [673] [674] [675] [676] [677] [678] [679] [680] [681] [682] [683] [684] [685] [686] [687] [688] [689] Underfull \vbox (badness 1515) has occurred while \output is active [690] [691] [692] [693] [694] [695] [696] [697] [698] [699] [700] [701] [702] [703] [704] [705] [706] [707] [708] [709] Underfull \hbox (badness 6658) in paragraph at lines 3940--3942 []\T1/ptm/m/n/10 For some pho-tos of Methuse-lah Walk see [][]$\T1/zi4/m/n/10 h ttp : / / www . ltrr . arizona . edu / ~hallman / [710] Underfull \vbox (badness 10000) has occurred while \output is active [711] [712] [713] [714] Underfull \vbox (badness 10000) has occurred while \output is active [715] Underfull \vbox (badness 10000) has occurred while \output is active [716] [717] [718] [719] [720] [721] [722] [723]) (./grDevices-pkg.tex [724] Chapter 4. [725] [726] [727] [728] [729] [730] [731] [732] [733] [734] [735] [736] [737] [738] [739] [740] [741] Underfull \hbox (badness 5175) in paragraph at lines 1066--1068 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [742] [743] [744] [745] Underfull \hbox (badness 1852) in paragraph at lines 1263--1266 []\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col- ors that will be used in plot-ting, call-ing [746] [747] [748] Underfull \hbox (badness 1490) in paragraph at lines 1469--1474 \T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\ T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/ 10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and [749] Underfull \hbox (badness 2698) in paragraph at lines 1523--1526 []\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 if the de-vice does not sup-port cap-ture, oth-er-wise a ma-trix of color names (for [750] Underfull \hbox (badness 10000) in paragraph at lines 1592--1596 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , the func-tion also re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 when [751] [752] [753] [754] Underfull \hbox (badness 1325) in paragraph at lines 1875--1885 \T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/ 10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1 /ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 , [755] [756] Underfull \hbox (badness 10000) in paragraph at lines 1980--1982 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [757] [758] [759] Underfull \hbox (badness 6758) in paragraph at lines 2141--2144 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [760] [761] [762] [763] [764] [765] [766] [767] [768] Underfull \hbox (badness 10000) in paragraph at lines 2707--2708 [769] [770] [771] [772] [773] [774] [775] Underfull \hbox (badness 1152) in paragraph at lines 3145--3147 []\T1/ptm/m/n/10 A length two in-te-ger vec-tor \T1/zi4/m/n/10 nr, nc \T1/ptm/m /n/10 giv-ing the num-ber of rows and columns, ful-fill-ing [776] [777] [778] [779] [780] Underfull \hbox (badness 2856) in paragraph at lines 3465--3468 []\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv e a C in-te-ger for-mat such as Underfull \hbox (badness 2662) in paragraph at lines 3479--3481 []\T1/ptm/m/n/10 title string to em-bed as the `\T1/zi4/m/n/10 /Title\T1/ptm/m/ n/10 ' field in the file. De-faults to [781] [782] Underfull \hbox (badness 1173) in paragraph at lines 3595--3605 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 paper \T1/ptm/m/n/10 ar-gu-ment sets the `\ T1/zi4/m/n/10 /MediaBox\T1/ptm/m/n/10 ' en-try in the file, which de-faults to \T1/zi4/m/n/10 width \T1/ptm/m/n/10 by [783] [784] [785] [786] [787] [788] [789] [790] [791] [792] [793] Underfull \hbox (badness 1067) in paragraph at lines 4302--4309 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [794] [795] Underfull \hbox (badness 3364) in paragraph at lines 4463--4465 []\T1/ptm/m/n/10 The TIFF spec-i-fi-ca-tion, in-clud-ing ex-ten-sions, at [][]$ \T1/zi4/m/n/10 https : / / partners . adobe . com / public / [796] Underfull \hbox (badness 1789) in paragraph at lines 4540--4542 []\T1/ptm/m/n/10 title string to em-bed as the \T1/zi4/m/n/10 Title \T1/ptm/m/n /10 com-ment in the file. De-faults to [797] Underfull \hbox (badness 1377) in paragraph at lines 4590--4595 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [798] Underfull \hbox (badness 2671) in paragraph at lines 4617--4625 \T1/ptm/m/n/10 For use in this way you will prob-a-bly want to use [][]\T1/zi4/ m/n/10 setEPS[][][]() \T1/ptm/m/n/10 to set the de-faults as Underfull \hbox (badness 1418) in paragraph at lines 4666--4673 \T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4 /m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/ zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm /m/n/10 , Underfull \hbox (badness 2443) in paragraph at lines 4674--4683 \T1/ptm/m/n/10 PostScript de-vice is us-ing URW fonts, you will ob-tain ac-cess to more char-ac-ters and Underfull \hbox (badness 2653) in paragraph at lines 4674--4683 \T1/ptm/m/n/10 more ap-pro-pri-ate met-rics by us-ing these names. To make thes e eas-ier to re-mem-ber, Underfull \hbox (badness 1755) in paragraph at lines 4684--4686 []\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East Asian lan-guages -- see [799] [800] Underfull \hbox (badness 1057) in paragraph at lines 4795--4800 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \ T1/zi4/m/n/10 "rgb"\T1/ptm/m/n/10 ) (which is RGB+gray) and [801] Underfull \hbox (badness 7344) in paragraph at lines 4855--4857 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [802] [803] Underfull \hbox (badness 2035) in paragraph at lines 4979--4988 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 4979--4988 \T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/ n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 4979--4988 \T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 , [804] Underfull \hbox (badness 10000) in paragraph at lines 5048--5055 []\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4 /m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu / Underfull \hbox (badness 2189) in paragraph at lines 5048--5055 \T1/zi4/m/n/10 chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Lunde's CJK V re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly . [805] [806] [807] Underfull \hbox (badness 1546) in paragraph at lines 5186--5194 []\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T 1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/ n/10 , [808] Underfull \hbox (badness 1648) in paragraph at lines 5263--5267 []\T1/ptm/m/n/10 title for the Quartz win-dow (ap-plies to on-screen out-put on ly), de-fault [809] [810] [811] [812] [813] [814] [815] Underfull \hbox (badness 10000) in paragraph at lines 5686--5689 []\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red /green/blue) into HSV space [816] Underfull \vbox (badness 3803) has occurred while \output is active [817] [818] [819] [820] [821] Underfull \hbox (badness 1189) in paragraph at lines 6083--6085 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [822] [823] Underfull \hbox (badness 10000) in paragraph at lines 6181--6183 []\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK lan-guages and [824] [825] [826] [827] Underfull \hbox (badness 3780) in paragraph at lines 6472--6478 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1 0 "AvantGarde"\T1/ptm/m/n/10 , [828] [829] [830] Underfull \hbox (badness 2680) in paragraph at lines 6668--6670 []\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of [831] [832] [833]) (./graphics-pkg.tex [834] Chapter 5. [835] [836] [837] [838] [839] [840] [841] [842] [843] [844] [845] Underfull \hbox (badness 10000) in paragraph at lines 683--690 []\T1/zi4/m/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/p tm/m/n/10 in-ter-face to the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/pt m/m/n/10 in [846] [847] [848] [849] Underfull \vbox (badness 3803) has occurred while \output is active [850] [851] [852] [853] [854] Underfull \hbox (badness 4634) in paragraph at lines 1246--1249 [][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n /10 , [855] [856] [857] [858] [859] [860] [861] [862] [863] [864] [865] [866] [867] [868] [869] [870] [871] Underfull \hbox (badness 1009) in paragraph at lines 2277--2284 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [872] [873] [874] [875] [876] [877] [878] [879] [880] [881] [882] [883] [884] [885] [886] [887] [888] [889] [890] [891] [892] [893] Underfull \vbox (badness 10000) has occurred while \output is active [894] Underfull \vbox (badness 10000) has occurred while \output is active [895] [896] [897] [898] Underfull \hbox (badness 1867) in paragraph at lines 3901--3905 []\T1/ptm/m/n/10 vector of back-ground (fill) col-ors for the open plot sym-bol s given by [899] [900] [901] [902] [903] [904] [905] Underfull \hbox (badness 1924) in paragraph at lines 4348--4353 []\T1/ptm/m/n/10 a func-tion which in-di-cates what should hap-pen when the dat a con-tain [906] Underfull \hbox (badness 2529) in paragraph at lines 4379--4382 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used: see [907] [908] [909] [910] [911] Underfull \hbox (badness 10000) in paragraph at lines 4729--4735 []\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n /10 (width, height) \T1/ptm/m/n/10 in user co-or-di-nate units. Underfull \hbox (badness 5908) in paragraph at lines 4729--4735 \T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin" ) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that [912] Underfull \hbox (badness 10000) in paragraph at lines 4860--4863 [913] Syntax Error: Couldn't find trailer dictionary Syntax Error: Invalid XRef entry Syntax Error (1762): Missing 'endstream' or incorrect stream length [914 ] Underfull \hbox (badness 10000) in paragraph at lines 4921--4923 Syntax Error: Couldn't find trailer dictionary Syntax Error: Invalid XRef entry Syntax Error (2987): Missing 'endstream' or incorrect stream length [915 ] [916] Underfull \hbox (badness 10000) in paragraph at lines 5111--5113 []\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2 :6\T1/ptm/m/n/10 ) cor-re-spond to [917] [918] [919] [920] [921] Underfull \vbox (badness 10000) has occurred while \output is active [922] [923] [924] [925] [926] [927] [928] [929] [930] [931] [932] [933] [934] [935] [936] [937] [938] [939] [940] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6581--6582 [][] Syntax Error: Couldn't find trailer dictionary Syntax Error: Invalid XRef entry Syntax Error (1294): Missing 'endstream' or incorrect stream length Syntax Error (4194): Missing 'endstream' or incorrect stream length [941 ] [942] Underfull \vbox (badness 10000) has occurred while \output is active [943] [944] [945] [946] [947] [948] [949] [950] [951] [952] Underfull \hbox (badness 1048) in paragraph at lines 7290--7295 \T1/ptm/m/n/10 avoided (see the Warn-ings sec-tion be-low). Split-screen mode i s ex-ited by the com-mand [953] Underfull \hbox (badness 1038) in paragraph at lines 7406--7409 []\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d rawn be-tween the point \T1/zi4/m/n/10 (x0[i], y0[i]) \T1/ptm/m/n/10 and the po int [954] [955] [956] [957] [958] [959] [960] [961] [962] [963] [964] [965] [966] [967] [968] [969] [970] [971] [972] [973] [974] Underfull \hbox (badness 6691) in paragraph at lines 8625--8628 []\T1/ptm/m/n/10 The main ti-tle (on top) us-ing font and size (char-ac-ter ex- pan-sion) Underfull \hbox (badness 2799) in paragraph at lines 8628--8630 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font and size \T1/zi4/m/n/10 par ("font.sub") \T1/ptm/m/n/10 and color [975] [976]pdfTeX warning (ext4): destination with the same identifier (name{Rf n.units}) has been already used, duplicate ignored \relax l.8710 \HeaderA{units}{Graphical Units}{units} [977] [978] [979] [980]) (./grid-pkg.tex Chapter 6. Underfull \vbox (badness 10000) has occurred while \output is active [981] [982] [983] [984] [985] [986] Underfull \hbox (badness 2680) in paragraph at lines 390--393 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1 /zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio n of [987] [988] [989] [990] [991] [992] [993] [994] [995] [996] Underfull \hbox (badness 4279) in paragraph at lines 970--979 [][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m /n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 unit[][][]\T1/ptm/m/n/10 , [997] [998] [999] [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009] [1010] [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020] [1021] [1022] [1023] [1024] [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033] [1034] [1035] [1036] [1037] [1038] [1039] Underfull \vbox (badness 3803) has occurred while \output is active [1040] [1041] [1042] [1043] [1044] [1045] [1046] [1047] [1048] [1049] [1050] [1051] [1052] [1053] Underfull \hbox (badness 1067) in paragraph at lines 4340--4343 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1054] [1055] [1056] [1057] Underfull \hbox (badness 7256) in paragraph at lines 4583--4585 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] [1066] [1067] [1068] [1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] [1078] Underfull \hbox (badness 10000) in paragraph at lines 5854--5860 \T1/ptm/m/n/10 and to spec-ify the min-i-mum or max-i-mum of a list of unit ob- jects (e.g., [1079] [1080] [1081] [1082] [1083] [1084] [1085] [1086] Underfull \hbox (badness 7649) in paragraph at lines 6324--6327 []\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by do-ing some-thing like [1087] [1088] [1089] [1090]) (./methods-pkg.tex Chapter 7. [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100] [1101] [1102] [1103] [1104] [1105] [1106] [1107] [1108] [1109] [1110] Underfull \hbox (badness 2237) in paragraph at lines 1454--1456 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \ T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package "\T1/ptm/m/n/10 , also of class [1111] [1112] [1113] [1114] [1115] [1116] [1117] [1118] [1119] Underfull \hbox (badness 10000) in paragraph at lines 2050--2055 []\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c an be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 2050--2055 \T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1 0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the [1120] [1121] [1122] [1123] [1124] [1125] [1126] [1127] Underfull \hbox (badness 10000) in paragraph at lines 2655--2658 []\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o b-jects of class [1128] [1129] Underfull \hbox (badness 1132) in paragraph at lines 2795--2799 []\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1 0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re -turned re-sult is in [1130] Underfull \hbox (badness 1033) in paragraph at lines 2827--2832 \T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store s the [1131] [1132] [1133] [1134] [1135] [1136] [1137] Underfull \hbox (badness 1102) in paragraph at lines 3339--3341 []\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na me of the pack-age (with-out the ex-tra-ne-ous [1138] [1139] [1140] [1141] [1142] Underfull \hbox (badness 10000) in paragraph at lines 3667--3672 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these classes takes spe-cial ar-gu-ments Underfull \hbox (badness 10000) in paragraph at lines 3675--3684 []\T1/ptm/m/n/10 The [1143] [1144] [1145] [1146] [1147] [1148] Underfull \vbox (badness 10000) has occurred while \output is active [1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] Underfull \hbox (badness 1436) in paragraph at lines 4580--4583 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "SealedMethodDefinition" \T1/ptm/m/n/ 10 is cre-ated by a call to [][]\T1/zi4/m/n/10 setMethod[][][] \T1/ptm/m/n/10 w ith ar-gu-ment Underfull \hbox (badness 1769) in paragraph at lines 4609--4615 []\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4609--4615 \T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T 1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by [1157] [1158] [1159] [1160] [1161] [1162] Underfull \vbox (badness 2452) has occurred while \output is active [1163] [1164] Underfull \vbox (badness 10000) has occurred while \output is active [1165] [1166] Underfull \hbox (badness 1092) in paragraph at lines 5281--5288 \T1/ptm/m/n/10 names cor-re-spond-ing to some or all of the for-mal ar-gu-ments . In the pre-vi-ous ex-am-ple, Underfull \hbox (badness 1117) in paragraph at lines 5281--5288 \T1/ptm/m/n/10 if se-lect-ing class \T1/zi4/m/n/10 "track" \T1/ptm/m/n/10 for \ T1/zi4/m/n/10 x\T1/ptm/m/n/10 , find-ing that the se-lec-tion was an-other meth -ods list and Underfull \hbox (badness 4036) in paragraph at lines 5329--5332 []\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10 the method to use in re-sponse to a [1167] [1168] [1169] [1170] [1171] Underfull \hbox (badness 1087) in paragraph at lines 5649--5654 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1172] [1173] [1174] [1175] Underfull \hbox (badness 2221) in paragraph at lines 5878--5883 []\T1/ptm/m/n/10 Two op-tional method names are in-ter-preted spe-cially, \T1/z i4/m/n/10 initialize \T1/ptm/m/n/10 and [1176] [1177] [1178] [1179] [1180] Underfull \hbox (badness 1675) in paragraph at lines 6343--6349 \T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1181] [1182] [1183] [1184] Underfull \vbox (badness 10000) has occurred while \output is active [1185] [1186]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4} ) has been already used, duplicate ignored \relax l.6820 \aliasA{S4}{S3Part}{S4} [1187] [1188] [1189] [1190]pdfTeX warning (ext4) : destination with the same identifier (name{Rfn.Complex}) has been already use d, duplicate ignored \relax l.7096 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate ignored \relax l.7098 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) has been already used, duplicate igno red \relax l.7099 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination wi th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7101 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor ed \relax l.7102 \aliasA{Summary}{S4groupGeneric}{Summary} [1191] Underfull \hbox (badness 2050) in paragraph at lines 7163--7167 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1192] [1193] [1194] Underfull \hbox (badness 1286) in paragraph at lines 7348--7350 []\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal ly [1195] [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203] [1204] [1205] [1206] [1207] [1208] [1209] [1210] [1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218] [1219] [1220] [1221] [1222] [1223] [1224] [1225] [1226] [1227] [1228] Underfull \hbox (badness 1852) in paragraph at lines 9759--9763 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1229] [1230] [1231] [1232]) (./parallel-pkg.tex Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 15--17 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4 /m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[ ][][]: see [1233] [1234] [1235] [1236] [1237] [1238] [1239] [1240] [1241] [1242] [1243] [1244] [1245] [1246] [1247] [1248] [1249] [1250] [1251] [1252] Underfull \hbox (badness 3386) in paragraph at lines 1246--1249 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R andom.seed \T1/ptm/m/n/10 when the [1253] [1254]) (./splines-pkg.tex Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1255] [1256] [1257] [1258] [1259] [1260] [1261] [1262] [1263] [1264] [1265] [1266] [1267] [1268] [1269]) (./stats-pkg.tex [1270] Chapter 10. [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] [1281] [1282] [1283] Underfull \hbox (badness 1412) in paragraph at lines 844--846 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm \T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for [1284] [1285] [1286] [1287] [1288] [1289] [1290] [1291] Underfull \hbox (badness 2503) in paragraph at lines 1325--1328 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1292] [1293] [1294] Underfull \hbox (badness 10000) in paragraph at lines 1504--1508 []\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov", "lm") \T1/ptm/m/n/ 10 or for mul-ti-ple re-sponses of class [1295] [1296] [1297] [1298] [1299] [1300] [1301] [1302] [1303] [1304] [1305] Underfull \hbox (badness 3965) in paragraph at lines 2164--2166 []\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val id for [1306] [1307] [1308] [1309] [1310] Underfull \hbox (badness 3965) in paragraph at lines 2506--2508 []\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val id for [1311] [1312] [1313] [1314] [1315] [1316] [1317] [1318] [1319] [1320] [1321] [1322] [1323] Underfull \hbox (badness 2503) in paragraph at lines 3323--3326 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1324] [1325] [1326] [1327] [1328] [1329] [1330] [1331] [1332] [1333] [1334] [1335] [1336] [1337] [1338] [1339] [1340] [1341] [1342] [1343] Underfull \hbox (badness 3989) in paragraph at lines 4548--4555 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1344] [1345] [1346] [1347] [1348] [1349] [1350] [1351] [1352] [1353] Underfull \hbox (badness 2556) in paragraph at lines 5149--5152 []\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/ ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p tm/m/n/10 . For Underfull \hbox (badness 2932) in paragraph at lines 5166--5168 []\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se- quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is given by [1354] [1355] [1356] [1357] Underfull \hbox (badness 1142) in paragraph at lines 5407--5419 \T1/ptm/m/n/10 For \T1/zi4/m/n/10 cov()\T1/ptm/m/n/10 , a non-Pearson method is un-usual but avail-able for the sake of com-plete-ness. [1358] [1359] Underfull \hbox (badness 2503) in paragraph at lines 5546--5550 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1360] Underfull \hbox (badness 1168) in paragraph at lines 5607--5612 []\T1/ptm/m/n/10 For Spear-man's test, p-values are com-puted us-ing al-go-rith m AS 89 for $\OML/cmm/m/it/10 n < \OT1/cmr/m/n/10 1290$ \T1/ptm/m/n/10 and [1361] [1362] [1363] [1364] [1365] [1366] [1367] Underfull \hbox (badness 8132) in paragraph at lines 6049--6054 \T1/ptm/m/n/10 then \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is a den-dro-gram of the sa me graph struc-ture as \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and for each node, [1368] [1369] [1370] [1371] [1372] Underfull \hbox (badness 7081) in paragraph at lines 6324--6327 []\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 10000) in paragraph at lines 6328--6330 []\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also [1373] [1374] [1375] [1376] [1377] Underfull \vbox (badness 3803) has occurred while \output is active [1378] [1379] [1380] [1381] [1382] [1383] [1384] [1385] Underfull \hbox (badness 10000) in paragraph at lines 7136--7139 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T 1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the [1386] [1387] Underfull \hbox (badness 10000) in paragraph at lines 7273--7276 []\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/zi4/m/n/10 ht tps : / / cran . r-[]project . org / web / views / [1388] [1389] [1390] [1391] Underfull \vbox (badness 3803) has occurred while \output is active [1392] [1393] [1394] [1395] [1396] [1397] [1398] [1399] [1400] [1401] [1402] [1403] [1404] [1405] [1406] [1407] [1408] [1409] [1410] [1411] [1412] Underfull \hbox (badness 2626) in paragraph at lines 8771--8774 []\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1413] Underfull \hbox (badness 2503) in paragraph at lines 8871--8875 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1414] [1415] [1416] [1417] [1418] Overfull \hbox (6.88992pt too wide) in paragraph at lines 9205--9207 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Fligner-Killeen test of homogeneity of variances"\T1/ptm/m/n/10 . [1419] [1420] [1421] [1422] [1423] [1424] [1425] [1426] [1427] [1428] [1429] [1430] [1431] [1432] [1433] Underfull \hbox (badness 4518) in paragraph at lines 10132--10137 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1434] [1435] [1436] [1437] Underfull \hbox (badness 2142) in paragraph at lines 10474--10477 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ [1438] Underfull \hbox (badness 1253) in paragraph at lines 10493--10496 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][ ]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it- er-a-tion. Hence, [1439] Underfull \hbox (badness 1708) in paragraph at lines 10555--10559 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1440] [1441] [1442] [1443] [1444] [1445] Underfull \hbox (badness 1694) in paragraph at lines 10951--10954 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to Underfull \hbox (badness 1867) in paragraph at lines 10970--10979 \T1/ptm/m/n/10 in the row case. If ei-ther is miss-ing, as by de-fault, then th e or-der-ing of the cor-re- [1446] [1447] [1448] [1449] [1450] [1451] [1452] [1453]pdfTeX warning (ext4): d estination with the same identifier (name{Rfn.hat}) has been already used, dupl icate ignored \relax l.11417 \aliasA{hat}{influence.measures}{hat} [1454] [1455] Underfull \hbox (badness 1484) in paragraph at lines 11540--11542 []\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1456] [1457] [1458] [1459] [1460] [1461] [1462] [1463] [1464] Underfull \hbox (badness 4441) in paragraph at lines 12098--12100 []\T1/ptm/m/n/10 vector of dif-fer-enc-ing co-ef-fi-cients, so an ARMA model is fit-ted to Underfull \hbox (badness 10000) in paragraph at lines 12105--12107 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa ult[][][] \T1/ptm/m/n/10 when [1465] [1466] [1467] [1468] [1469] [1470] Underfull \hbox (badness 2894) in paragraph at lines 12439--12443 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1471] [1472] [1473] [1474] [1475] [1476] [1477] [1478] [1479] [1480] [1481] Underfull \hbox (badness 4518) in paragraph at lines 13134--13139 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1482] [1483] [1484] [1485] [1486] [1487] [1488] [1489] [1490] [1491] Underfull \hbox (badness 4518) in paragraph at lines 13781--13786 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1492] [1493] Underfull \hbox (badness 10000) in paragraph at lines 13919--13923 []\T1/ptm/m/n/10 Only for the (de-fault) case \T1/zi4/m/n/10 (surface = Underfull \hbox (badness 1199) in paragraph at lines 13926--13928 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if \T1/zi4/m/n/10 family \T1/ptm/m/n/10 is [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504] [1505] [1506] [1507] [1508] [1509] [1510] [1511] Underfull \hbox (badness 2503) in paragraph at lines 14990--14994 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1512] [1513] [1514] [1515] [1516] [1517] [1518] [1519] Underfull \hbox (badness 1418) in paragraph at lines 15499--15505 []\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response \T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(, "offset") \T1 /ptm/m/n/10 and [1520] [1521] [1522] [1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530] [1531] [1532] [1533] [1534] [1535] [1536] [1537] [1538] [1539] [1540] [1541] [1542] [1543] [1544] [1545] Underfull \hbox (badness 2359) in paragraph at lines 17123--17125 []\T1/ptm/m/n/10 Douglas M. Bates and Saikat De-bRoy: David M. Gay for the For- tran code used by [1546] [1547] Underfull \vbox (badness 10000) has occurred while \output is active [1548] Underfull \vbox (badness 10000) has occurred while \output is active [1549] [1550] [1551] [1552] [1553] [1554] [1555] [1556] [1557] [1558] [1559] [1560] [1561] Underfull \hbox (badness 1377) in paragraph at lines 18034--18039 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 18039--18042 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 1184) in paragraph at lines 18052--18056 \T1/ptm/m/n/10 value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + reltol ) \T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 18060--18064 []\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \ T1/ptm/m/n/10 meth-ods if [1562] [1563] [1564] Underfull \vbox (badness 10000) has occurred while \output is active [1565] [1566] [1567] [1568] [1569] [1570] [1571] Underfull \hbox (badness 1337) in paragraph at lines 18676--18679 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1572] [1573] [1574] [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] [1584] Underfull \hbox (badness 5563) in paragraph at lines 19406--19408 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , add to al-read y ex-ist-ing plot. Only valid for Underfull \hbox (badness 1194) in paragraph at lines 19409--19412 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1585] [1586] [1587] [1588] [1589] [1590] Underfull \hbox (badness 2503) in paragraph at lines 19776--19779 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1591] Underfull \hbox (badness 10000) in paragraph at lines 19803--19805 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1 /ptm/m/n/10 or [1592] [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601] [1602] [1603] [1604] [1605] [1606] [1607] Underfull \hbox (badness 10000) in paragraph at lines 20803--20809 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][ ][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 , [1608] [1609] [1610] [1611] [1612] [1613] [1614] [1615] [1616] [1617] [1618] [1619] [1620] [1621] [1622] [1623] [1624] [1625] [1626] [1627] [1628] [1629] [1630] Underfull \hbox (badness 1337) in paragraph at lines 22138--22144 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1631] [1632] [1633] [1634] [1635] [1636] [1637] [1638] [1639] [1640] [1641] [1642] Underfull \hbox (badness 10000) in paragraph at lines 22931--22934 []\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by [1643] [1644] [1645] [1646] [1647] [1648] [1649] [1650] [1651] Underfull \hbox (badness 10000) in paragraph at lines 23508--23511 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run med(x, k) \T1/ptm/m/n/10 sim-ply has [1652] Underfull \hbox (badness 3690) in paragraph at lines 23559--23563 [][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's end point rule and is called by de-fault from [1653] [1654] [1655] [1656] [1657] [1658] [1659] [1660] Underfull \hbox (badness 3439) in paragraph at lines 24029--24035 [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSasympO rig[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSbiexp[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 SSfol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSfpl[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 SSgompertz[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 SSlogis[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSmicmen[][][]\T1/ptm/m/n/1 0 , [1661] [1662] [1663] [1664] [1665] [1666] [1667] [1668] [1669] Underfull \hbox (badness 10000) in paragraph at lines 24577--24582 []\T1/ptm/m/n/10 integer or [][]\T1/zi4/m/n/10 function[][][] \T1/ptm/m/n/10 gi v-ing the num-ber of knots to use when [1670] [1671] [1672] [1673] [1674] [1675] [1676] [1677] [1678] [1679] [1680] [1681] [1682] [1683] [1684] Underfull \vbox (badness 3803) has occurred while \output is active [1685] [1686] Underfull \hbox (badness 3514) in paragraph at lines 25593--25598 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1687] Underfull \hbox (badness 3514) in paragraph at lines 25655--25660 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1688] Underfull \hbox (badness 3514) in paragraph at lines 25712--25717 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1689] Underfull \hbox (badness 3514) in paragraph at lines 25773--25779 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1690] [1691] [1692] [1693] Underfull \hbox (badness 3514) in paragraph at lines 25986--25991 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion Underfull \hbox (badness 3514) in paragraph at lines 26042--26047 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1694] Underfull \hbox (badness 3514) in paragraph at lines 26099--26104 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1695] Underfull \hbox (badness 3514) in paragraph at lines 26154--26159 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1696] [1697] Underfull \hbox (badness 6691) in paragraph at lines 26223--26228 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p tm/m/n/10 . It is the value of the ex-pres-sion [1698] [1699] [1700] [1701] [1702] [1703] [1704] [1705] Underfull \hbox (badness 10000) in paragraph at lines 26747--26750 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex- Underfull \hbox (badness 10000) in paragraph at lines 26747--26750 \T1/ptm/m/n/10 trac-tion, which should be odd. If \T1/zi4/m/n/10 NULL\T1/ptm/m/ n/10 , the de-fault, [1706] [1707] [1708] [1709] [1710] [1711] [1712] [1713] [1714] [1715] Underfull \hbox (badness 5431) in paragraph at lines 27353--27355 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1716] [1717] [1718] [1719] Underfull \hbox (badness 5431) in paragraph at lines 27563--27566 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1720] [1721] [1722] [1723] [1724] Underfull \hbox (badness 1337) in paragraph at lines 27875--27879 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1725] [1726] Underfull \hbox (badness 10000) in paragraph at lines 27992--27995 []\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/ 10 ; cur-rently ex-cept for \T1/zi4/m/n/10 rt()\T1/ptm/m/n/10 , only for [1727] [1728] [1729] Underfull \hbox (badness 1616) in paragraph at lines 28175--28178 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1730] [1731] [1732] [1733] [1734] [1735] [1736] [1737] [1738] [1739] [1740] [1741] [1742] [1743] [1744] [1745] [1746] [1747] [1748] Underfull \hbox (badness 10000) in paragraph at lines 29302--29306 []\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect [1749] [1750] [1751] Underfull \vbox (badness 10000) has occurred while \output is active [1752] [1753] [1754] Underfull \hbox (badness 1337) in paragraph at lines 29666--29670 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1755] [1756] [1757] [1758] [1759] [1760] [1761] [1762] Underfull \hbox (badness 1337) in paragraph at lines 30150--30154 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1763] Underfull \hbox (badness 5161) in paragraph at lines 30243--30245 []\T1/ptm/m/n/10 an es-ti-mate of the lo-ca-tion pa-ram-e-ter. (Only present if ar-gu-ment [1764] [1765] [1766] [1767] [1768] [1769] Underfull \hbox (badness 10000) in paragraph at lines 30607--30612 []\T1/ptm/m/n/10 There is a \T1/zi4/m/n/10 summary \T1/ptm/m/n/10 method for co n-tin-gency ta-ble ob-jects cre-ated by \T1/zi4/m/n/10 table \T1/ptm/m/n/10 or [1770] [1771] [1772]) (./stats4-pkg.tex Chapter 11. [1773] [1774] [1775] [1776] [1777] [1778]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup licate ignored \relax l.407 ...Package \pkg{stats4}}{show.Rdash.methods} [1779] [1780] [1781] [1782]) (./tcltk-pkg.tex Chapter 12. [1783] [1784] [1785] [1786] [1787] [1788] [1789] Underfull \vbox (badness 10000) has occurred while \output is active [1790] Underfull \vbox (badness 10000) has occurred while \output is active [1791] Underfull \hbox (badness 1546) in paragraph at lines 664--671 []\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing any Tk or Tcl com-mand by sim-ply run-ning [1792] [1793] [1794] [1795] [1796] [1797] [1798] [1799] [1800] [1801] [1802] Underfull \hbox (badness 3375) in paragraph at lines 1407--1410 [][][]\T1/zi4/m/n/10 select.list[][][] \T1/ptm/m/n/10 (a text ver-sion ex-cept on Win-dows and the OS X GUI), [][]\T1/zi4/m/n/10 menu[][][] \T1/ptm/m/n/10 (wh ose [1803]) (./tools-pkg.tex [1804] Chapter 13. [1805] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1806] Underfull \hbox (badness 3039) in paragraph at lines 164--167 []\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1807] [1808] Underfull \hbox (badness 1308) in paragraph at lines 285--298 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 285--298 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 formatMastersthesis\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm /m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma tTechreport \T1/ptm/m/n/10 and [1809] [1810] Underfull \hbox (badness 3039) in paragraph at lines 389--391 []\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine to use. Over-rides any [1811] [1812] [1813] [1814] [1815] [1816] [1817] [1818] [1819] [1820] [1821] Underfull \hbox (badness 1635) in paragraph at lines 1050--1052 []\T1/ptm/m/n/10 Delete files in the tem-po-rary di-rec-tory? This op-tion is i g-nored when [1822] Underfull \hbox (badness 4441) in paragraph at lines 1126--1136 \T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe n-den-cies (de- [1823] Underfull \hbox (badness 1014) in paragraph at lines 1148--1150 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1154--1156 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous Underfull \hbox (badness 10000) in paragraph at lines 1185--1188 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1185--1188 \T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 , [1824] [1825] [1826] Underfull \hbox (badness 10000) in paragraph at lines 1348--1350 []\T1/ptm/m/n/10 Re-save PDF files (es-pe-cially vi-gnettes) more com-pactly. S up-port func-tion for [1827] [1828] [1829] Underfull \hbox (badness 7981) in paragraph at lines 1518--1522 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of Underfull \hbox (badness 1082) in paragraph at lines 1524--1526 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see [1830] [1831] [1832] [1833]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ignored \relax l.1721 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [1834] [1835] Underfull \hbox (badness 5726) in paragraph at lines 1847--1852 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/n/10 De pendsList \T1/ptm/m/n/10 ob-ject Underfull \hbox (badness 7221) in paragraph at lines 1847--1852 \T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo r in-stance if there was [1836] [1837] [1838] [1839] [1840] [1841] [1842] [1843] Underfull \hbox (badness 7981) in paragraph at lines 2323--2329 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1844] [1845] [1846] [1847] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/n' instead on input line 2607. [1848] [1849] [1850] [1851] Underfull \hbox (badness 1424) in paragraph at lines 2844--2846 []\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t or of links, as re-turned by [1852] [1853] [1854] [1855] [1856] [1857] [1858] [1859] [1860] [1861] [1862] Underfull \hbox (badness 10000) in paragraph at lines 3539--3541 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [1863] [1864] [1865] [1866] [1867] [1868] Underfull \hbox (badness 1838) in paragraph at lines 3919--3925 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 3919--3925 \T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [1869] [1870] Underfull \hbox (badness 5726) in paragraph at lines 3999--4004 []\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/sl/10 TR UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/sl/10 DependsList \T1/ptm/m/n/10 ob-ject Underfull \hbox (badness 7221) in paragraph at lines 3999--4004 \T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo r in-stance if there was [1871] [1872] Underfull \hbox (badness 1688) in paragraph at lines 4142--4154 []\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to be used in the `\T 1/zi4/m/sl/10 PACKAGES\T1/ptm/m/n/10 ' and [1873] [1874] [1875] [1876]) (./utils-pkg.tex Chapter 14. [1877] Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ', [1878] [1879] Underfull \hbox (badness 1454) in paragraph at lines 197--200 []\T1/ptm/m/n/10 logical in-di-cat-ing if the search should be case-insensitive , \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 by de- Underfull \hbox (badness 1540) in paragraph at lines 213--216 []\T1/zi4/m/sl/10 find \T1/ptm/m/n/10 is a dif-fer-ent user in-ter-face for the same task as \T1/zi4/m/sl/10 apropos\T1/ptm/m/n/10 . How-ever, by de-fault [1880] [1881] [1882] [1883] [1884] [1885] Underfull \hbox (badness 10000) in paragraph at lines 543--549 []\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1 0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 543--549 \T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the [1886] Underfull \hbox (badness 5847) in paragraph at lines 656--662 []\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to se-lect which of the pack-ages on the repos-i-to- Underfull \hbox (badness 4229) in paragraph at lines 656--662 \T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi 4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as [1887] Underfull \hbox (badness 3861) in paragraph at lines 724--729 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/ 10 "License_is_FOSS"\T1/ptm/m/n/10 , [1888] [1889] [1890] [1891] [1892] Underfull \vbox (badness 10000) has occurred while \output is active [1893] [1894] [1895] [1896] [1897] Underfull \hbox (badness 1371) in paragraph at lines 1320--1322 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [1898] [1899] [1900] [1901] [1902] [1903] [1904] Underfull \hbox (badness 2057) in paragraph at lines 1812--1814 []\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th is func-tion is in-voked for its side ef-fect of up-dat-ing [1905] [1906] Underfull \hbox (badness 10000) in paragraph at lines 1913--1915 []\T1/ptm/m/n/10 One can in-clude an auto-generated pack-age ci-ta-tion in the `\T1/zi4/m/sl/10 CITATION\T1/ptm/m/n/10 ' file via [1907] Underfull \hbox (badness 5189) in paragraph at lines 2003--2005 []\T1/ptm/m/n/10 A list of keys that have been pre-vi-ously cited, to be used w hen [1908] [1909] [1910] [1911] Underfull \hbox (badness 1661) in paragraph at lines 2221--2228 []\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sim-pli-fied to an [][]\T1/zi4/m/sl/10 array[][][] \T1/ptm/m/n/10 (typ-i- Underfull \hbox (badness 1990) in paragraph at lines 2238--2241 []\T1/ptm/m/n/10 a [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4 /m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m /n/10 ar-gu-ment above. In the lat-ter case, the iden-tity [1912] [1913] [1914] [1915] [1916] [1917] [1918] [1919] [1920] [1921] [1922] [1923] [1924] [1925] [1926] Underfull \hbox (badness 1412) in paragraph at lines 3235--3239 []\T1/ptm/m/n/10 The \T1/zi4/m/sl/10 "libcurl" \T1/ptm/m/n/10 and \T1/zi4/m/sl/ 10 "wget" \T1/ptm/m/n/10 meth-ods fol-low `\T1/zi4/m/sl/10 http://\T1/ptm/m/n/1 0 ' and `\T1/zi4/m/sl/10 https://\T1/ptm/m/n/10 ' redi-rec-tions: the [1927] Underfull \hbox (badness 1430) in paragraph at lines 3259--3267 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the \T1/zi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the Underfull \hbox (badness 1231) in paragraph at lines 3302--3308 []\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers via en-vi-ron-ment vari-able [1928] [1929] [1930] [1931] [1932] [1933] [1934] [1935] [1936] [1937] [1938] [1939] [1940] [1941]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.4123 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.format.1}) has been already used, dupl icate ignored \relax l.4123 ...mat Unordered and Ordered Lists}{format} [1942] [1943] [1944] [1945] [1946] [1947] [1948] [1949] [1950] [1951] [1952] [1953] [1954] [1955] [1956] Underfull \hbox (badness 1371) in paragraph at lines 5073--5075 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [1957] Underfull \hbox (badness 1502) in paragraph at lines 5162--5167 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 5162--5167 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [1958] [1959] [1960] Underfull \hbox (badness 10000) in paragraph at lines 5335--5344 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, [1961] Underfull \hbox (badness 2150) in paragraph at lines 5398--5401 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [1962] [1963] Underfull \hbox (badness 3118) in paragraph at lines 5535--5537 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [1964] Underfull \hbox (badness 2409) in paragraph at lines 5568--5572 []\T1/ptm/m/n/10 To in-stall a source pack-age with com-piled code only for the sub-architecture used by [1965] Underfull \hbox (badness 1325) in paragraph at lines 5676--5680 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/sl/10 available.packag es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able [1966] Underfull \hbox (badness 10000) in paragraph at lines 5759--5762 []\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to be passed Underfull \hbox (badness 10000) in paragraph at lines 5759--5762 \T1/ptm/m/n/10 to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a source pac k-age in-stall. E.g., [1967] Underfull \hbox (badness 3219) in paragraph at lines 5832--5839 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/sl/ 10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 5832--5839 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 5832--5839 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by [1968] Underfull \hbox (badness 10000) in paragraph at lines 5912--5917 [][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/ 10 , [1969] [1970] [1971] [1972] [1973] [1974] [1975] [1976] [1977] [1978] [1979] [1980] [1981] [1982] [1983] [1984] [1985] [1986] [1987] [1988] Underfull \hbox (badness 10000) in paragraph at lines 7124--7126 []\T1/zi4/m/sl/10 packageVersion() \T1/ptm/m/n/10 is a con-ve-nience short-cut, al-low-ing things like Underfull \hbox (badness 2310) in paragraph at lines 7129--7134 []\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [1989] [1990] [1991] [1992] [1993] [1994] [1995] [1996] [1997] Underfull \hbox (badness 1789) in paragraph at lines 7679--7681 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [1998] [1999] [2000] [2001] [2002] [2003] [2004] [2005] [2006] [2007] [2008] [2009] Underfull \hbox (badness 1097) in paragraph at lines 8504--8507 []\T1/ptm/m/n/10 The name \T1/zi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b e used on Win-dows, in which case [2010] [2011] Underfull \hbox (badness 3000) in paragraph at lines 8640--8645 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 read.t able[][][]\T1/ptm/m/n/10 ; [2012] [2013] [2014] [2015] [2016] [2017] [2018] [2019] [2020] Underfull \hbox (badness 2134) in paragraph at lines 9222--9227 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 write. table[][][]\T1/ptm/m/n/10 ; [2021] [2022] [2023] [2024] [2025] [2026] [2027] Underfull \hbox (badness 2469) in paragraph at lines 9655--9659 []\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia , The Free En-cy-clo-pe-dia. Underfull \hbox (badness 3428) in paragraph at lines 9655--9659 [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / w / index . php ? title = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac- [2028] [2029] [2030] [2031] [2032] [2033] Underfull \hbox (badness 10000) in paragraph at lines 9996--9998 []\T1/ptm/m/n/10 For \T1/zi4/m/sl/10 type = "txt"\T1/ptm/m/n/10 , [][]\T1/zi4/m /sl/10 file.show[][][] \T1/ptm/m/n/10 is used. [][]\T1/zi4/m/sl/10 vignette[][] []\T1/ptm/m/n/10 s are nicely viewed via [2034] [2035] Underfull \hbox (badness 2150) in paragraph at lines 10172--10174 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/ ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emac s / manual / [2036] [2037] [2038] Underfull \hbox (badness 10000) in paragraph at lines 10350--10354 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n ow taken from the en-vi-ron-ment vari-able [2039] Underfull \hbox (badness 10000) in paragraph at lines 10381--10387 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a [2040] Underfull \hbox (badness 2096) in paragraph at lines 10499--10502 []\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing whether PNG fig-ures should be gen-er-ated. Ig-nored if Underfull \hbox (badness 1527) in paragraph at lines 10503--10506 []\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing whether JPEG fig-ures should be gen-er-ated. Ig-nored if [2041] Underfull \hbox (badness 1009) in paragraph at lines 10569--10580 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If [2042] [2043] [2044] [2045] [2046] Underfull \hbox (badness 3780) in paragraph at lines 10868--10872 []\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1 /zi4/m/sl/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via Underfull \hbox (badness 2635) in paragraph at lines 10884--10887 []\T1/ptm/m/n/10 Repository `\T1/zi4/m/sl/10 CRAN\T1/ptm/m/n/10 ' is treated sp e-cially: the value is taken from the cur-rent set-ting of [2047] [2048] [2049] [2050] [2051] [2052] Underfull \hbox (badness 5970) in paragraph at lines 11258--11261 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive [2053] [2054] [2055] Underfull \hbox (badness 10000) in paragraph at lines 11437--11439 []\T1/ptm/m/n/10 Options other than \T1/zi4/m/sl/10 memory = "none" \T1/ptm/m/n /10 ap-ply only to files pro-duced by [2056] [2057] [2058] [2059] [2060] [2061] Underfull \hbox (badness 10000) in paragraph at lines 11838--11841 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / pubs . opengroup . org / Underfull \hbox (badness 2245) in paragraph at lines 11838--11841 \T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9 2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX [2062] [2063] [2064] [2065] [2066] [2067] [2068] [2069] [2070] Underfull \hbox (badness 10000) in paragraph at lines 12368--12370 []\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/sl/10 destdir \T1/ptm/m/n/10 and \ T1/zi4/m/sl/10 dependencies \T1/ptm/m/n/10 to be passed to Underfull \hbox (badness 1052) in paragraph at lines 12371--12373 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. See [2071] Underfull \hbox (badness 10000) in paragraph at lines 12401--12406 []\T1/ptm/m/n/10 For how the list of suit-able avail-able pack-ages is de-ter-m ined see Underfull \hbox (badness 10000) in paragraph at lines 12401--12406 [][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 . \T1/zi4/m/sl/10 av ailable = NULL \T1/ptm/m/n/10 make a call to Underfull \hbox (badness 10000) in paragraph at lines 12430--12433 [][][]\T1/zi4/m/sl/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.package s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n /10 , [2072] [2073] [2074] [2075] Overfull \hbox (25.86961pt too wide) in paragraph at lines 12669--12672 [][][]\T1/zi4/m/sl/10 browseVignettes[][][] \T1/ptm/m/n/10 for an HTML-based vi -gnette browser; [][]\T1/zi4/m/sl/10 RShowDoc[][][](, package = "") [2076] [2077] Underfull \hbox (badness 1454) in paragraph at lines 12747--12751 []\T1/ptm/m/n/10 the char-ac-ter(s) to print at the end of each line (row). 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The sim-plest is in [94] [95] [96] Overfull \hbox (58.35893pt too wide) in paragraph at lines 6146--6149 []\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa ult", "internal", "wininet", "libcurl")\T1/ptm/m/n/10 : [97] [98] Underfull \hbox (badness 10000) in paragraph at lines 6290--6293 []\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo st gen-eral form (from RFC1738) is [99] [100] Underfull \hbox (badness 1442) in paragraph at lines 6451--6457 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \ T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re- move a Underfull \hbox (badness 1248) in paragraph at lines 6451--6457 \T1/ptm/m/n/10 Byte Or-der Mark if present (which it of-ten is for files and we b-pages gen-er-ated by Mi- Underfull \hbox (badness 2080) in paragraph at lines 6451--6457 \T1/ptm/m/n/10 crosoft ap-pli-ca-tions). If a BOM is re-quired (it is not rec-o m-mended) when writ-ing it [101] Underfull \hbox (badness 3568) in paragraph at lines 6512--6519 \T1/zi4/m/n/10 txt$[][]\T1/ptm/m/n/10 ), which can also be spec-i-fied as \T1/z i4/m/n/10 "X11_primary" \T1/ptm/m/n/10 and the sec-ondary se-lec-tion as [102] [103] Underfull \vbox (badness 10000) has occurred while \output is active [104] [105] [106] [107] [108] [109] [110] [111] Underfull \hbox (badness 2096) in paragraph at lines 7149--7153 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [112] Underfull \hbox (badness 4595) in paragraph at lines 7206--7209 []\T1/ptm/m/n/10 logical, in-di-cat-ing if an `x[i]' equal to the low-est (or h igh-est, for [113] Underfull \hbox (badness 3000) in paragraph at lines 7242--7244 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0, \T1/zi4/m/n/10 getOption("OutDec") \T1/ptm/m/n/10 is con-sulted when la-bels are con-structed for Underfull \hbox (badness 2351) in paragraph at lines 7267--7270 [][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T 1/ptm/m/n/10 , [114] [115] [116] [117] Underfull \hbox (badness 10000) in paragraph at lines 7517--7528 []\T1/zi4/m/n/10 data.frame \T1/ptm/m/n/10 con-verts each of its ar-gu-ments to a data frame by call-ing [118] Underfull \hbox (badness 4479) in paragraph at lines 7589--7598 [][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[] [][] \T1/ptm/m/n/10 (for the col-umn names), Underfull \hbox (badness 2469) in paragraph at lines 7589--7598 [][]\T1/zi4/m/n/10 [.data.frame[][][] \T1/ptm/m/n/10 for sub-set-ting meth-ods, [][]\T1/zi4/m/n/10 Math.data.frame[][][] \T1/ptm/m/n/10 etc, about \T1/ptm/m/i t/10 Group \T1/ptm/m/n/10 meth-ods for [119] [120] [121] [122] [123] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] Underfull \hbox (badness 1394) in paragraph at lines 9200--9205 []\T1/ptm/m/n/10 Subtraction of date-time ob-jects gives an ob-ject of this cla ss, by call-ing \T1/zi4/m/n/10 difftime \T1/ptm/m/n/10 with [144] [145] [146] [147] [148] Underfull \hbox (badness 1052) in paragraph at lines 9537--9542 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 dontCheck \T1/ptm/m/n/10 func-tion is the s ame as [][]\T1/zi4/m/n/10 identity[][][]\T1/ptm/m/n/10 , but is in-ter-preted b y \T1/zi4/m/n/10 R CMD check Underfull \hbox (badness 1231) in paragraph at lines 9537--9542 \T1/ptm/m/n/10 code anal-y-sis as a di-rec-tive to sup-press check-ing of \T1/z i4/m/n/10 x\T1/ptm/m/n/10 . Cur-rently this is only used by [149] [150] Underfull \hbox (badness 1735) in paragraph at lines 9675--9679 \T1/zi4/m/n/10 754-[]2008$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Double _ precision$[][]\T1/ptm/m/n/10 , [][]$\T1/ zi4/m/n/10 https : / / en . wikipedia . [151] [152] [153] [154] [155] [156] Underfull \hbox (badness 2150) in paragraph at lines 10079--10082 []\T1/ptm/m/n/10 logical in-di-cat-ing if du-pli-ca-tion should be con-sid-ered from the re-verse [157] Underfull \hbox (badness 6396) in paragraph at lines 10093--10101 []\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len t method def-i-ni-tions for Underfull \hbox (badness 2409) in paragraph at lines 10134--10141 []\T1/ptm/m/n/10 Except for fac-tors, log-i-cal and raw vec-tors the de-fault \ T1/zi4/m/n/10 nmax = NA \T1/ptm/m/n/10 is equiv-a-lent to [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] Underfull \hbox (badness 4569) in paragraph at lines 11178--11182 []\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been passed as an ar-gu-ment Underfull \hbox (badness 2401) in paragraph at lines 11178--11182 \T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller' s en-vi-ron-ment, i.e., one needs [174] [175] [176] [177] [178] [179] [180] [181] Underfull \hbox (badness 2698) in paragraph at lines 11754--11763 []\T1/ptm/m/n/10 Both \T1/zi4/m/n/10 $ \T1/ptm/m/n/10 and \T1/zi4/m/n/10 [[ \T1 /ptm/m/n/10 can be ap-plied to en-vi-ron-ments. Only char-ac-ter in-dices are a l-lowed Underfull \hbox (badness 4341) in paragraph at lines 11754--11763 \T1/ptm/m/n/10 and no par-tial match-ing is done. The se-man-tics of these op-e r-a-tions are those of [182] [183] [184] [185] [186] [187] [188] [189] [190] [191] Underfull \hbox (badness 6236) in paragraph at lines 12398--12401 []\T1/ptm/m/n/10 For \T1/zi4/m/n/10 iconv \T1/ptm/m/n/10 this will give the im- ple-men-ta-tion as well as the ver-sion, for ex-am-ple [192] [193] [194] [195] [196] [197] Underfull \hbox (badness 2253) in paragraph at lines 12776--12778 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [198] Underfull \hbox (badness 1565) in paragraph at lines 12847--12851 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/ 10 , and [199] Underfull \hbox (badness 10000) in paragraph at lines 12891--12893 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m /n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with [200] [201] Underfull \hbox (badness 1466) in paragraph at lines 13032--13035 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/ zi4/m/n/10 file.copy \T1/ptm/m/n/10 and [202] [203] Underfull \hbox (badness 10000) in paragraph at lines 13140--13144 [][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [ ][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 13151--13154 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [204] [205] [206] [207] Underfull \hbox (badness 3965) in paragraph at lines 13403--13407 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] Underfull \hbox (badness 4429) in paragraph at lines 14133--14136 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] \T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for [219] Underfull \hbox (badness 10000) in paragraph at lines 14225--14227 []\T1/ptm/m/n/10 If you set \T1/zi4/m/n/10 format \T1/ptm/m/n/10 it over-rides the set-ting of \T1/zi4/m/n/10 mode\T1/ptm/m/n/10 , so Underfull \hbox (badness 10000) in paragraph at lines 14231--14235 []\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b ers on the dec-i-mal point, so [220] Underfull \hbox (badness 10000) in paragraph at lines 14273--14277 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt m/m/n/10 3.2.0: for use Underfull \hbox (badness 4156) in paragraph at lines 14273--14277 \T1/ptm/m/n/10 within [][]\T1/zi4/m/n/10 print[][][] \T1/ptm/m/n/10 meth-ods in pack-ages which might be used with ear-lier ver-sions: use [221] Underfull \vbox (badness 3803) has occurred while \output is active [222] [223] [224] [225] [226] [227] [228] [229] Underfull \hbox (badness 2452) in paragraph at lines 14853--14857 []\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 14853--14857 \T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_ WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and [230] [231] [232] Underfull \hbox (badness 1092) in paragraph at lines 15026--15031 [][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t he DLL has been loaded us-ing [233] [234] [235] [236] Underfull \hbox (badness 6741) in paragraph at lines 15274--15278 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \ T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10 , [237] [238] [239] [240] Underfull \hbox (badness 1867) in paragraph at lines 15580--15587 []\T1/ptm/m/n/10 character string con-tain-ing a [][]reg-u-lar ex-pres-sion[][] [] (or char-ac-ter string for [241] [242] [243] [244] Underfull \vbox (badness 10000) has occurred while \output is active [245] [246] Underfull \hbox (badness 3679) in paragraph at lines 15960--15962 []\T1/ptm/m/n/10 The TRE li-brary of Ville Lau-rikari ([][]$\T1/zi4/m/n/10 http : / / laurikari . net / tre/$[][]\T1/ptm/m/n/10 ) is used ex-cept for [247] [248] [249] [250] [251] [252] [253] Underfull \hbox (badness 1478) in paragraph at lines 16440--16443 []\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [254] [255] [256] [257] Underfull \hbox (badness 10000) in paragraph at lines 16693--16695 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 http : / / www . unicode . org / reports / tr35 / [258] [259] [260] [261] [262] [263] [264] [265] [266] Underfull \hbox (badness 1442) in paragraph at lines 17256--17258 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see [267] Underfull \hbox (badness 2452) in paragraph at lines 17348--17364 [][][]\T1/zi4/m/n/10 as.character[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.c omplex[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.double[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.integer[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.logi cal[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 as.raw[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/n/10 as.vector[][][]\T1/ptm/m/n/10 , [268] [269] [270] [271] [272] [273] [274] Underfull \hbox (badness 1248) in paragraph at lines 17756--17759 []\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n /10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/ m/n/10 , [275] [276] [277] [278] Underfull \hbox (badness 4739) in paragraph at lines 18012--18014 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [279] [280] [281] [282] [283] [284] [285] [286] [287] [288] [289] [290] [291] [292] [293] [294] Underfull \hbox (badness 1360) in paragraph at lines 18960--18965 \T1/zi4/m/n/10 "none"\T1/ptm/m/n/10 . It is in-tended for the ver-sion of OpenS SL used, but not all Underfull \hbox (badness 10000) in paragraph at lines 18983--18989 [][][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / sslcerts . html$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 http : / / curl . haxx . se / docs / Underfull \hbox (badness 1127) in paragraph at lines 18983--18989 \T1/zi4/m/n/10 ssl-[]compared . html$[][] \T1/ptm/m/n/10 for more de-tails on S SL ver-sions. Nor-mally \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 used with \T1/phv /m/n/10 R [295] Underfull \hbox (badness 10000) in paragraph at lines 19056--19060 []\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory Underfull \hbox (badness 2460) in paragraph at lines 19056--19060 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/ 10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T 1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10 ' [296] [297] Underfull \hbox (badness 1509) in paragraph at lines 19191--19198 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 library \T1/ptm/m/n/10 is called with no \T1 /zi4/m/n/10 package \T1/ptm/m/n/10 or \T1/zi4/m/n/10 help \T1/ptm/m/n/10 ar-gu- ment, it lists all avail-able pack-ages Underfull \hbox (badness 1354) in paragraph at lines 19191--19198 \T1/ptm/m/n/10 Use \T1/zi4/m/n/10 .packages(all = TRUE) \T1/ptm/m/n/10 to ob-ta in just the names of all avail-able pack-ages, and Underfull \hbox (badness 1014) in paragraph at lines 19207--19212 []\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1 0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if [298] [299] [300] [301] [302] [303] [304] [305] [306] [307] [308] [309] Underfull \hbox (badness 1264) in paragraph at lines 19938--19943 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [310] [311] [312] [313] [314] [315] [316] [317] [318] [319] [320] Underfull \hbox (badness 10000) in paragraph at lines 20692--20694 []\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n /10 has the prop-erty that [321] [322] [323] [324] [325] [326] [327] [328] [329] [330] [331] [332] [333] [334] [335] [336] Underfull \hbox (badness 1077) in paragraph at lines 21690--21696 \T1/zi4/m/n/10 / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm/m/n/10 , [][ ]$\T1/zi4/m/n/10 http : / / tukaani . org / xz/$[][] \T1/ptm/m/n/10 and [][]$\T 1/zi4/m/n/10 https : / / en . wikipedia . [337] [338] [339] Underfull \hbox (badness 1484) in paragraph at lines 21851--21859 \T1/ptm/m/n/10 to al-low more (up to 3Gb). See [][]$\T1/zi4/m/n/10 https : / / www . microsoft . com / whdc / system / platform / [340] [341] [342] [343] Underfull \hbox (badness 2790) in paragraph at lines 22122--22125 []\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s ages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 22122--22125 \T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m es-sages, so can be sup-pressed by [344] [345] [346] [347] Underfull \hbox (badness 1194) in paragraph at lines 22403--22406 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 . It calls [348] [349] [350] [351] Underfull \hbox (badness 10000) in paragraph at lines 22609--22615 []\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 , \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond- ing Underfull \hbox (badness 5862) in paragraph at lines 22609--22615 \T1/ptm/m/n/10 list, i.e., \T1/zi4/m/n/10 names(as.list(env, all.names = TRUE)) \T1/ptm/m/n/10 which are also given by Underfull \hbox (badness 10000) in paragraph at lines 22619--22622 []\T1/ptm/m/n/10 It is pos-si-ble to up-date just part of the names at-tribute via the gen-eral rules: Underfull \hbox (badness 10000) in paragraph at lines 22619--22622 \T1/ptm/m/n/10 see the ex-am-ples. This works be-cause the ex-pres-sion there i s eval-u-ated as [352] [353] [354] [355] [356] [357] [358] [359] [360] [361] [362] [363] [364] [365] Underfull \hbox (badness 10000) in paragraph at lines 23544--23546 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m ore ef-fi-cient than [366] [367] [368] [369] Underfull \hbox (badness 1199) in paragraph at lines 23771--23777 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 is.numeric \T1/ptm/m/n/ 10 re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 if its ar-gu-ment is of [][]mode [][][] \T1/zi4/m/n/10 "numeric" Underfull \hbox (badness 2027) in paragraph at lines 23771--23777 \T1/ptm/m/n/10 ([][]type[][][] \T1/zi4/m/n/10 "double" \T1/ptm/m/n/10 or type \ T1/zi4/m/n/10 "integer"\T1/ptm/m/n/10 ) and not a fac-tor, and \T1/zi4/m/n/10 F ALSE \T1/ptm/m/n/10 oth-er-wise. That is, [370] [371] [372] [373] [374] [375] [376] [377] Underfull \hbox (badness 1038) in paragraph at lines 24336--24344 []\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/ 10 R \T1/ptm/m/n/10 starts up. Ini-tially Underfull \hbox (badness 1881) in paragraph at lines 24345--24348 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 24364--24366 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [378] Underfull \hbox (badness 10000) in paragraph at lines 24436--24446 []\T1/ptm/m/n/10 the com-mand used for dis-play-ing text files by [][]\T1/zi4/m /n/10 file.show[][][]\T1/ptm/m/n/10 . De-faults to Underfull \hbox (badness 2142) in paragraph at lines 24447--24453 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able Underfull \hbox (badness 1968) in paragraph at lines 24460--24465 []\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 24470--24472 []\T1/ptm/m/n/10 Used for the readline-based ter-mi-nal in-ter-face. De-fault v alue [379] [380] [381] Underfull \hbox (badness 10000) in paragraph at lines 24721--24727 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/ n/10 setRepositories[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 24721--24727 \T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "http://bioconductor.org"\T1/p tm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 24721--24727 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 "http://bioconductor.statistik.tu-dortmund.de"\T 1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 10000) in paragraph at lines 24734--24737 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][ ][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10 and [382] Underfull \hbox (badness 2689) in paragraph at lines 24758--24760 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see Underfull \hbox (badness 10000) in paragraph at lines 24790--24795 []\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/ 10 (and in-di-rectly Underfull \hbox (badness 1629) in paragraph at lines 24796--24807 \T1/ptm/m/n/10 si-ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi 4/m/n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use an d Underfull \hbox (badness 7203) in paragraph at lines 24808--24811 []\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/ n/10 and Underfull \hbox (badness 4084) in paragraph at lines 24818--24830 \T1/ptm/m/n/10 Pos-si-ble val-ues are \T1/zi4/m/n/10 "source" \T1/ptm/m/n/10 (t he de-fault ex-cept un-der a CRAN OS X build), Underfull \hbox (badness 10000) in paragraph at lines 24818--24830 \T1/zi4/m/n/10 "mac.binary."\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "mac.binary.maveric ks" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "both" \T1/ptm/m/n/10 (the de-fault for C RAN Underfull \hbox (badness 7397) in paragraph at lines 24818--24830 \T1/ptm/m/n/10 OS X builds). Win-dows uses \T1/zi4/m/n/10 "win.binary"\T1/ptm/m /n/10 . (\T1/zi4/m/n/10 "mac.binary.leopard" \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 24832--24839 []\T1/ptm/m/n/10 URLs of the repos-i-to-ries for use by [][]\T1/zi4/m/n/10 upda te.packages[][][]\T1/ptm/m/n/10 . De-faults to Underfull \hbox (badness 10000) in paragraph at lines 24832--24839 \T1/zi4/m/n/10 c(CRAN="@CRAN@")\T1/ptm/m/n/10 , a value that causes some util-i -ties to prompt for a Underfull \hbox (badness 6380) in paragraph at lines 24832--24839 \T1/ptm/m/n/10 CRAN mir-ror. To avoid this do set the CRAN mir-ror, by some-thi ng like Underfull \hbox (badness 1082) in paragraph at lines 24832--24839 \T1/zi4/m/n/10 local({r <- getOption("repos"); r["CRAN"] <- "http://my.local.cr an"; [383] [384] [385] [386] [387] Underfull \hbox (badness 10000) in paragraph at lines 25153--25157 []\T1/ptm/m/n/10 The outer prod-uct of the ar-rays \T1/zi4/m/n/10 X \T1/ptm/m/n /10 and \T1/zi4/m/n/10 Y \T1/ptm/m/n/10 is the ar-ray \T1/zi4/m/n/10 A \T1/ptm/ m/n/10 with di-men-sion Underfull \hbox (badness 10000) in paragraph at lines 25153--25157 \T1/zi4/m/n/10 c(dim(X), dim(Y)) \T1/ptm/m/n/10 where el-e-ment \T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] [388] [389] [390] [391] [392] Underfull \hbox (badness 1735) in paragraph at lines 25471--25475 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 paste() \T1/ptm/m/n/10 co-erces [][]\ T1/zi4/m/n/10 NA_character_[][][]\T1/ptm/m/n/10 , the char-ac-ter miss-ing valu e, to \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 which [393] [394] [395] [396] [397] [398] [399] [400] [401] [402] Underfull \hbox (badness 2726) in paragraph at lines 26030--26033 []\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di -cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put, see [403] [404] [405] [406] [407] [408] [409] [410] [411] [412] [413] [414] [415] Underfull \hbox (badness 1052) in paragraph at lines 26849--26854 []\T1/zi4/m/n/10 qr.X \T1/ptm/m/n/10 re-turns $\OML/cmm/b/it/10 X$\T1/ptm/m/n/1 0 , the orig-i-nal ma-trix from which the qr ob-ject was con-structed, pro-vide d [416] [417] [418] [419] [420] [421] [422] [423] [424] [425] [426] Underfull \hbox (badness 1533) in paragraph at lines 27577--27580 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [427] [428] Underfull \hbox (badness 1163) in paragraph at lines 27739--27749 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\ T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [429] [430] [431] [432] [433] [434] [435] [436] [437] [438] [439] [440] [441] [442] [443] [444] [445] [446] [447] [448] [449] [450] [451] [452] Underfull \hbox (badness 10000) in paragraph at lines 29241--29245 []\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n /10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 29241--29245 \T1/zi4/m/n/10 "(?[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t he matches are also re-turned by name. Underfull \hbox (badness 6188) in paragraph at lines 29263--29265 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 http : / / p ubs . opengroup . org / onlinepubs / 9699919799 / [453] [454] [455] [456] [457] [458] [459] [460] [461] Underfull \hbox (badness 1655) in paragraph at lines 29808--29810 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm /m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for [462] [463] [464] [465] [466] [467] [468] [469] [470] [471] [472] Underfull \hbox (badness 10000) in paragraph at lines 30476--30480 []\T1/zi4/m/n/10 save.image() \T1/ptm/m/n/10 is just a short-cut for `save my c ur-rent workspace', i.e., [473] [474] [475] Underfull \hbox (badness 2302) in paragraph at lines 30716--30723 []\T1/ptm/m/n/10 The root-mean-square for a (pos-si-bly cen-tered) col-umn is d e-fined as $[]$, Underfull \hbox (badness 2837) in paragraph at lines 30716--30723 \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 x$ \T1/ptm/m/n/10 is a vec-tor of the no n-missing val-ues and $\OML/cmm/m/it/10 n$ \T1/ptm/m/n/10 is the num-ber of non -missing Underfull \hbox (badness 2980) in paragraph at lines 30716--30723 \T1/ptm/m/n/10 val-ues. In the case \T1/zi4/m/n/10 center = TRUE\T1/ptm/m/n/10 , this is the same as the stan-dard de-vi-a-tion, Underfull \hbox (badness 2181) in paragraph at lines 30716--30723 \T1/ptm/m/n/10 but in gen-eral it is not. (To scale by the stan-dard de-vi-a-ti ons with-out cen-ter-ing, use [476] [477] [478] Underfull \hbox (badness 2261) in paragraph at lines 30870--30875 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i t ap-plies to all fields; oth-er-wise, if Underfull \hbox (badness 10000) in paragraph at lines 30897--30903 []\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac- ters [479] Underfull \hbox (badness 10000) in paragraph at lines 30973--30978 []\T1/ptm/m/n/10 Note that since \T1/zi4/m/n/10 sep \T1/ptm/m/n/10 is a sep-a-r a-tor and not a ter-mi-na-tor, read-ing a file by [480] [481] [482] [483] [484] [485] [486] [487] [488] [489] [490] [491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501] [502] [503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] [519] [520] [521] [522] Underfull \hbox (badness 1072) in paragraph at lines 33757--33761 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 33762--33766 []\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/ 10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 - -no-init-file\T1/ptm/m/n/10 ', [523] Underfull \hbox (badness 10000) in paragraph at lines 33790--33796 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 33790--33796 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 33790--33796 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in Underfull \hbox (badness 3343) in paragraph at lines 33803--33810 \T1/ptm/m/n/10 early in the start-up pro-cess-ing. It con-tains en-vi-ron-ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 33803--33810 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 33803--33810 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [524] [525] [526] [527] [528] Underfull \hbox (badness 10000) in paragraph at lines 34094--34100 []\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form at \T1/ptm/m/n/10 meth-ods is Underfull \hbox (badness 1152) in paragraph at lines 34094--34100 \T1/zi4/m/n/10 "%Y-%m-%d %H:%M:%S" \T1/ptm/m/n/10 if any el-e-ment has a time c om-po-nent which is [529] [530] [531] [532] [533] [534] [535] [536] [537] [538] [539] [540] [541] [542] [543] [544] [545] [546] [547] [548] [549] [550] [551] [552] [553] [554] [555] [556] Underfull \hbox (badness 3333) in paragraph at lines 35877--35882 []\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi s may need to be matched ex-plic-itly: for ex-am-ple [557] [558] [559] [560] [561] [562] [563] [564] [565] [566] Underfull \hbox (badness 1472) in paragraph at lines 36497--36500 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee p their source in-clud-ing com-ments, see [567] [568] [569] [570] [571] [572] [573] [574] [575] [576] [577] Underfull \hbox (badness 2671) in paragraph at lines 37159--37162 []\T1/ptm/m/n/10 levels to re-move for all fac-tors in \T1/zi4/m/n/10 ...\T1/pt m/m/n/10 . If set to \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 , it im-plies [578] [579] [580] [581] [582] [583] Underfull \hbox (badness 10000) in paragraph at lines 37563--37566 [][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [ ][]$http : / / developer . r-[]project . org / [584] [585] Underfull \hbox (badness 10000) in paragraph at lines 37684--37688 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 getTaskCallbackNames [][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer . [586] Underfull \hbox (badness 10000) in paragraph at lines 37746--37750 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[ ][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 http : / / developer . [587] [588] [589] [590] [591] [592] [593] [594] [595] [596] [597] [598] [599] [600] [601] [602] [603] [604] [605] Underfull \hbox (badness 1990) in paragraph at lines 39041--39049 []\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e r-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 39041--39049 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less [606] [607] [608] [609] [610] Underfull \hbox (badness 1515) in paragraph at lines 39313--39318 []\T1/ptm/m/n/10 On most plat-forms `file' in-cludes sym-bolic links, fi-fos an d sock-ets. Prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 2.15.0 [611] [612] [613] Underfull \hbox (badness 1917) in paragraph at lines 39543--39550 []\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/ ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute [614] [615] [616] [617] [618] [619] [620] [621] [622] Underfull \hbox (badness 3668) in paragraph at lines 40128--40130 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di- ately, even if [623] [624] Underfull \hbox (badness 2401) in paragraph at lines 40233--40237 []\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [625] [626] [627] Underfull \hbox (badness 2111) in paragraph at lines 40402--40407 \T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n ot empty, these are used as col-umn names. Underfull \hbox (badness 6542) in paragraph at lines 40418--40423 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m /n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is [628] [629] [630] [631] [632] [633] [634] Underfull \hbox (badness 10000) in paragraph at lines 40863--40868 []\T1/ptm/m/n/10 This is a spe-cial case of rank-ing, but as a less gen-eral fu nc-tion than [][]\T1/zi4/m/n/10 rank[][][] Underfull \hbox (badness 10000) in paragraph at lines 40863--40868 \T1/ptm/m/n/10 is more suit-able to be made generic. The de-fault method is sim -i-lar to [635] [636] Underfull \hbox (badness 5417) in paragraph at lines 40955--40959 []\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [637] Underfull \hbox (badness 10000) in paragraph at lines 41016--41020 []\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard ' reg-exps, in-clud-ing el-e-ments named [638]) (./compiler-pkg.tex Chapter 2. [639] [640] [641] [642]) (./datasets-pkg.tex Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 12--14 []\T1/ptm/m/n/10 This pack-age con-tains a va-ri-ety of datasets. For a com-ple te list, use [643] [644] [645] [646] [647] [648] [649] [650] [651] [652] [653] [654] [655] [656] [657] [658] [659] [660] [661] [662] [663] [664] [665] [666] [667] [668] [669] [670] [671] [672] [673] [674] [675] [676] [677] [678] [679] [680] [681] [682] [683] [684] [685] [686] [687] [688] [689] Underfull \vbox (badness 1515) has occurred while \output is active [690] [691] [692] [693] [694] [695] [696] [697] [698] [699] [700] [701] [702] [703] [704] [705] [706] [707] [708] [709] Underfull \hbox (badness 6658) in paragraph at lines 3940--3942 []\T1/ptm/m/n/10 For some pho-tos of Methuse-lah Walk see [][]$\T1/zi4/m/n/10 h ttp : / / www . ltrr . arizona . edu / ~hallman / [710] Underfull \vbox (badness 10000) has occurred while \output is active [711] [712] [713] [714] Underfull \vbox (badness 10000) has occurred while \output is active [715] Underfull \vbox (badness 10000) has occurred while \output is active [716] [717] [718] [719] [720] [721] [722] [723]) (./grDevices-pkg.tex [724] Chapter 4. [725] [726] [727] [728] [729] [730] [731] [732] [733] [734] [735] [736] [737] [738] [739] [740] [741] Underfull \hbox (badness 5175) in paragraph at lines 1066--1068 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [742] [743] [744] [745] Underfull \hbox (badness 1852) in paragraph at lines 1263--1266 []\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col- ors that will be used in plot-ting, call-ing [746] [747] [748] Underfull \hbox (badness 1490) in paragraph at lines 1469--1474 \T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\ T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/ 10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and [749] Underfull \hbox (badness 2698) in paragraph at lines 1523--1526 []\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 if the de-vice does not sup-port cap-ture, oth-er-wise a ma-trix of color names (for [750] Underfull \hbox (badness 10000) in paragraph at lines 1592--1596 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , the func-tion also re-turns \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 when [751] [752] [753] [754] Underfull \hbox (badness 1325) in paragraph at lines 1875--1885 \T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/ 10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1 /ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 , [755] [756] Underfull \hbox (badness 10000) in paragraph at lines 1980--1982 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [757] [758] [759] Underfull \hbox (badness 6758) in paragraph at lines 2141--2144 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [760] [761] [762] [763] [764] [765] [766] [767] [768] Underfull \hbox (badness 10000) in paragraph at lines 2707--2708 [769] [770] [771] [772] [773] [774] [775] Underfull \hbox (badness 1152) in paragraph at lines 3145--3147 []\T1/ptm/m/n/10 A length two in-te-ger vec-tor \T1/zi4/m/n/10 nr, nc \T1/ptm/m /n/10 giv-ing the num-ber of rows and columns, ful-fill-ing [776] [777] [778] [779] [780] Underfull \hbox (badness 2856) in paragraph at lines 3465--3468 []\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv e a C in-te-ger for-mat such as Underfull \hbox (badness 2662) in paragraph at lines 3479--3481 []\T1/ptm/m/n/10 title string to em-bed as the `\T1/zi4/m/n/10 /Title\T1/ptm/m/ n/10 ' field in the file. De-faults to [781] [782] Underfull \hbox (badness 1173) in paragraph at lines 3595--3605 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 paper \T1/ptm/m/n/10 ar-gu-ment sets the `\ T1/zi4/m/n/10 /MediaBox\T1/ptm/m/n/10 ' en-try in the file, which de-faults to \T1/zi4/m/n/10 width \T1/ptm/m/n/10 by [783] [784] [785] [786] [787] [788] [789] [790] [791] [792] [793] Underfull \hbox (badness 1067) in paragraph at lines 4302--4309 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [794] [795] Underfull \hbox (badness 3364) in paragraph at lines 4463--4465 []\T1/ptm/m/n/10 The TIFF spec-i-fi-ca-tion, in-clud-ing ex-ten-sions, at [][]$ \T1/zi4/m/n/10 https : / / partners . adobe . com / public / [796] Underfull \hbox (badness 1789) in paragraph at lines 4540--4542 []\T1/ptm/m/n/10 title string to em-bed as the \T1/zi4/m/n/10 Title \T1/ptm/m/n /10 com-ment in the file. De-faults to [797] Underfull \hbox (badness 1377) in paragraph at lines 4590--4595 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [798] Underfull \hbox (badness 2671) in paragraph at lines 4617--4625 \T1/ptm/m/n/10 For use in this way you will prob-a-bly want to use [][]\T1/zi4/ m/n/10 setEPS[][][]() \T1/ptm/m/n/10 to set the de-faults as Underfull \hbox (badness 1418) in paragraph at lines 4666--4673 \T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4 /m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/ zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm /m/n/10 , Underfull \hbox (badness 2443) in paragraph at lines 4674--4683 \T1/ptm/m/n/10 PostScript de-vice is us-ing URW fonts, you will ob-tain ac-cess to more char-ac-ters and Underfull \hbox (badness 2653) in paragraph at lines 4674--4683 \T1/ptm/m/n/10 more ap-pro-pri-ate met-rics by us-ing these names. To make thes e eas-ier to re-mem-ber, Underfull \hbox (badness 1755) in paragraph at lines 4684--4686 []\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East Asian lan-guages -- see [799] [800] Underfull \hbox (badness 1057) in paragraph at lines 4795--4800 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \ T1/zi4/m/n/10 "rgb"\T1/ptm/m/n/10 ) (which is RGB+gray) and [801] Underfull \hbox (badness 7344) in paragraph at lines 4855--4857 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [802] [803] Underfull \hbox (badness 2035) in paragraph at lines 4979--4988 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 4979--4988 \T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/ n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 4979--4988 \T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 , [804] Underfull \hbox (badness 10000) in paragraph at lines 5048--5055 []\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4 /m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu / Underfull \hbox (badness 2189) in paragraph at lines 5048--5055 \T1/zi4/m/n/10 chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Lunde's CJK V re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly . [805] [806] [807] Underfull \hbox (badness 1546) in paragraph at lines 5186--5194 []\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T 1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/ n/10 , [808] Underfull \hbox (badness 1648) in paragraph at lines 5263--5267 []\T1/ptm/m/n/10 title for the Quartz win-dow (ap-plies to on-screen out-put on ly), de-fault [809] [810] [811] [812] [813] [814] [815] Underfull \hbox (badness 10000) in paragraph at lines 5686--5689 []\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red /green/blue) into HSV space [816] Underfull \vbox (badness 3803) has occurred while \output is active [817] [818] [819] [820] [821] Underfull \hbox (badness 1189) in paragraph at lines 6083--6085 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [822] [823] Underfull \hbox (badness 10000) in paragraph at lines 6181--6183 []\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK lan-guages and [824] [825] [826] [827] Underfull \hbox (badness 3780) in paragraph at lines 6472--6478 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1 0 "AvantGarde"\T1/ptm/m/n/10 , [828] [829] [830] Underfull \hbox (badness 2680) in paragraph at lines 6668--6670 []\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of [831] [832] [833]) (./graphics-pkg.tex [834] Chapter 5. [835] [836] [837] [838] [839] [840] [841] [842] [843] [844] [845] Underfull \hbox (badness 10000) in paragraph at lines 683--690 []\T1/zi4/m/n/10 axTicks() \T1/ptm/m/n/10 can be used an \T1/phv/m/n/10 R \T1/p tm/m/n/10 in-ter-face to the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/pt m/m/n/10 in [846] [847] [848] [849] Underfull \vbox (badness 3803) has occurred while \output is active [850] [851] [852] [853] [854] Underfull \hbox (badness 4634) in paragraph at lines 1246--1249 [][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n /10 , [855] [856] [857] [858] [859] [860] [861] [862] [863] [864] [865] [866] [867] [868] [869] [870] [871] Underfull \hbox (badness 1009) in paragraph at lines 2277--2284 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [872] [873] [874] [875] [876] [877] [878] [879] [880] [881] [882] [883] [884] [885] [886] [887] [888] [889] [890] [891] [892] [893] Underfull \vbox (badness 10000) has occurred while \output is active [894] Underfull \vbox (badness 10000) has occurred while \output is active [895] [896] [897] [898] Underfull \hbox (badness 1867) in paragraph at lines 3901--3905 []\T1/ptm/m/n/10 vector of back-ground (fill) col-ors for the open plot sym-bol s given by [899] [900] [901] [902] [903] [904] [905] Underfull \hbox (badness 1924) in paragraph at lines 4348--4353 []\T1/ptm/m/n/10 a func-tion which in-di-cates what should hap-pen when the dat a con-tain [906] Underfull \hbox (badness 2529) in paragraph at lines 4379--4382 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used: see [907] [908] [909] [910] [911] Underfull \hbox (badness 10000) in paragraph at lines 4729--4735 []\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n /10 (width, height) \T1/ptm/m/n/10 in user co-or-di-nate units. Underfull \hbox (badness 5908) in paragraph at lines 4729--4735 \T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin" ) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that [912] Underfull \hbox (badness 10000) in paragraph at lines 4860--4863 [913] Syntax Error: Couldn't find trailer dictionary Syntax Error: Invalid XRef entry Syntax Error (1762): Missing 'endstream' or incorrect stream length [914 ] Underfull \hbox (badness 10000) in paragraph at lines 4921--4923 Syntax Error: Couldn't find trailer dictionary Syntax Error: Invalid XRef entry Syntax Error (2987): Missing 'endstream' or incorrect stream length [915 ] [916] Underfull \hbox (badness 10000) in paragraph at lines 5111--5113 []\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2 :6\T1/ptm/m/n/10 ) cor-re-spond to [917] [918] [919] [920] [921] Underfull \vbox (badness 10000) has occurred while \output is active [922] [923] [924] [925] [926] [927] [928] [929] [930] [931] [932] [933] [934] [935] [936] [937] [938] [939] [940] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6581--6582 [][] Syntax Error: Couldn't find trailer dictionary Syntax Error: Invalid XRef entry Syntax Error (1294): Missing 'endstream' or incorrect stream length Syntax Error (4194): Missing 'endstream' or incorrect stream length [941 ] [942] Underfull \vbox (badness 10000) has occurred while \output is active [943] [944] [945] [946] [947] [948] [949] [950] [951] [952] Underfull \hbox (badness 1048) in paragraph at lines 7290--7295 \T1/ptm/m/n/10 avoided (see the Warn-ings sec-tion be-low). Split-screen mode i s ex-ited by the com-mand [953] Underfull \hbox (badness 1038) in paragraph at lines 7406--7409 []\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d rawn be-tween the point \T1/zi4/m/n/10 (x0[i], y0[i]) \T1/ptm/m/n/10 and the po int [954] [955] [956] [957] [958] [959] [960] [961] [962] [963] [964] [965] [966] [967] [968] [969] [970] [971] [972] [973] [974] Underfull \hbox (badness 6691) in paragraph at lines 8625--8628 []\T1/ptm/m/n/10 The main ti-tle (on top) us-ing font and size (char-ac-ter ex- pan-sion) Underfull \hbox (badness 2799) in paragraph at lines 8628--8630 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font and size \T1/zi4/m/n/10 par ("font.sub") \T1/ptm/m/n/10 and color [975] [976]pdfTeX warning (ext4): destination with the same identifier (name{Rf n.units}) has been already used, duplicate ignored \relax l.8710 \HeaderA{units}{Graphical Units}{units} [977] [978] [979] [980]) (./grid-pkg.tex Chapter 6. Underfull \vbox (badness 10000) has occurred while \output is active [981] [982] [983] [984] [985] [986] Underfull \hbox (badness 2680) in paragraph at lines 390--393 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1 /zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio n of [987] [988] [989] [990] [991] [992] [993] [994] [995] [996] Underfull \hbox (badness 4279) in paragraph at lines 970--979 [][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m /n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 unit[][][]\T1/ptm/m/n/10 , [997] [998] [999] [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009] [1010] [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020] [1021] [1022] [1023] [1024] [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033] [1034] [1035] [1036] [1037] [1038] [1039] Underfull \vbox (badness 3803) has occurred while \output is active [1040] [1041] [1042] [1043] [1044] [1045] [1046] [1047] [1048] [1049] [1050] [1051] [1052] [1053] Underfull \hbox (badness 1067) in paragraph at lines 4340--4343 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1054] [1055] [1056] [1057] Underfull \hbox (badness 7256) in paragraph at lines 4583--4585 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] [1066] [1067] [1068] [1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] [1078] Underfull \hbox (badness 10000) in paragraph at lines 5854--5860 \T1/ptm/m/n/10 and to spec-ify the min-i-mum or max-i-mum of a list of unit ob- jects (e.g., [1079] [1080] [1081] [1082] [1083] [1084] [1085] [1086] Underfull \hbox (badness 7649) in paragraph at lines 6324--6327 []\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by do-ing some-thing like [1087] [1088] [1089] [1090]) (./methods-pkg.tex Chapter 7. [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100] [1101] [1102] [1103] [1104] [1105] [1106] [1107] [1108] [1109] [1110] Underfull \hbox (badness 2237) in paragraph at lines 1454--1456 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \ T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package "\T1/ptm/m/n/10 , also of class [1111] [1112] [1113] [1114] [1115] [1116] [1117] [1118] [1119] Underfull \hbox (badness 10000) in paragraph at lines 2050--2055 []\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c an be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 2050--2055 \T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1 0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the [1120] [1121] [1122] [1123] [1124] [1125] [1126] [1127] Underfull \hbox (badness 10000) in paragraph at lines 2655--2658 []\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o b-jects of class [1128] [1129] Underfull \hbox (badness 1132) in paragraph at lines 2795--2799 []\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1 0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re -turned re-sult is in [1130] Underfull \hbox (badness 1033) in paragraph at lines 2827--2832 \T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store s the [1131] [1132] [1133] [1134] [1135] [1136] [1137] Underfull \hbox (badness 1102) in paragraph at lines 3339--3341 []\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na me of the pack-age (with-out the ex-tra-ne-ous [1138] [1139] [1140] [1141] [1142] Underfull \hbox (badness 10000) in paragraph at lines 3667--3672 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these classes takes spe-cial ar-gu-ments Underfull \hbox (badness 10000) in paragraph at lines 3675--3684 []\T1/ptm/m/n/10 The [1143] [1144] [1145] [1146] [1147] [1148] Underfull \vbox (badness 10000) has occurred while \output is active [1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] Underfull \hbox (badness 1436) in paragraph at lines 4580--4583 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "SealedMethodDefinition" \T1/ptm/m/n/ 10 is cre-ated by a call to [][]\T1/zi4/m/n/10 setMethod[][][] \T1/ptm/m/n/10 w ith ar-gu-ment Underfull \hbox (badness 1769) in paragraph at lines 4609--4615 []\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4609--4615 \T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T 1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by [1157] [1158] [1159] [1160] [1161] [1162] Underfull \vbox (badness 2452) has occurred while \output is active [1163] [1164] Underfull \vbox (badness 10000) has occurred while \output is active [1165] [1166] Underfull \hbox (badness 1092) in paragraph at lines 5281--5288 \T1/ptm/m/n/10 names cor-re-spond-ing to some or all of the for-mal ar-gu-ments . In the pre-vi-ous ex-am-ple, Underfull \hbox (badness 1117) in paragraph at lines 5281--5288 \T1/ptm/m/n/10 if se-lect-ing class \T1/zi4/m/n/10 "track" \T1/ptm/m/n/10 for \ T1/zi4/m/n/10 x\T1/ptm/m/n/10 , find-ing that the se-lec-tion was an-other meth -ods list and Underfull \hbox (badness 4036) in paragraph at lines 5329--5332 []\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10 the method to use in re-sponse to a [1167] [1168] [1169] [1170] [1171] Underfull \hbox (badness 1087) in paragraph at lines 5649--5654 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1172] [1173] [1174] [1175] Underfull \hbox (badness 2221) in paragraph at lines 5878--5883 []\T1/ptm/m/n/10 Two op-tional method names are in-ter-preted spe-cially, \T1/z i4/m/n/10 initialize \T1/ptm/m/n/10 and [1176] [1177] [1178] [1179] [1180] Underfull \hbox (badness 1675) in paragraph at lines 6343--6349 \T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1181] [1182] [1183] [1184] Underfull \vbox (badness 10000) has occurred while \output is active [1185] [1186]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4} ) has been already used, duplicate ignored \relax l.6820 \aliasA{S4}{S3Part}{S4} [1187] [1188] [1189] [1190]pdfTeX warning (ext4) : destination with the same identifier (name{Rfn.Complex}) has been already use d, duplicate ignored \relax l.7096 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate ignored \relax l.7098 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) has been already used, duplicate igno red \relax l.7099 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination wi th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7101 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor ed \relax l.7102 \aliasA{Summary}{S4groupGeneric}{Summary} [1191] Underfull \hbox (badness 2050) in paragraph at lines 7163--7167 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1192] [1193] [1194] Underfull \hbox (badness 1286) in paragraph at lines 7348--7350 []\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal ly [1195] [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203] [1204] [1205] [1206] [1207] [1208] [1209] [1210] [1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218] [1219] [1220] [1221] [1222] [1223] [1224] [1225] [1226] [1227] [1228] Underfull \hbox (badness 1852) in paragraph at lines 9759--9763 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1229] [1230] [1231] [1232]) (./parallel-pkg.tex Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 15--17 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4 /m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[ ][][]: see [1233] [1234] [1235] [1236] [1237] [1238] [1239] [1240] [1241] [1242] [1243] [1244] [1245] [1246] [1247] [1248] [1249] [1250] [1251] [1252] Underfull \hbox (badness 3386) in paragraph at lines 1246--1249 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R andom.seed \T1/ptm/m/n/10 when the [1253] [1254]) (./splines-pkg.tex Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1255] [1256] [1257] [1258] [1259] [1260] [1261] [1262] [1263] [1264] [1265] [1266] [1267] [1268] [1269]) (./stats-pkg.tex [1270] Chapter 10. [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] [1281] [1282] [1283] Underfull \hbox (badness 1412) in paragraph at lines 844--846 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm \T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for [1284] [1285] [1286] [1287] [1288] [1289] [1290] [1291] Underfull \hbox (badness 2503) in paragraph at lines 1325--1328 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1292] [1293] [1294] Underfull \hbox (badness 10000) in paragraph at lines 1504--1508 []\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov", "lm") \T1/ptm/m/n/ 10 or for mul-ti-ple re-sponses of class [1295] [1296] [1297] [1298] [1299] [1300] [1301] [1302] [1303] [1304] [1305] Underfull \hbox (badness 3965) in paragraph at lines 2164--2166 []\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val id for [1306] [1307] [1308] [1309] [1310] Underfull \hbox (badness 3965) in paragraph at lines 2506--2508 []\T1/ptm/m/n/10 the AIC value cor-re-spond-ing to the log-likelihood. Only val id for [1311] [1312] [1313] [1314] [1315] [1316] [1317] [1318] [1319] [1320] [1321] [1322] [1323] Underfull \hbox (badness 2503) in paragraph at lines 3323--3326 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1324] [1325] [1326] [1327] [1328] [1329] [1330] [1331] [1332] [1333] [1334] [1335] [1336] [1337] [1338] [1339] [1340] [1341] [1342] [1343] Underfull \hbox (badness 3989) in paragraph at lines 4548--4555 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1344] [1345] [1346] [1347] [1348] [1349] [1350] [1351] [1352] [1353] Underfull \hbox (badness 2556) in paragraph at lines 5149--5152 []\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/ ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p tm/m/n/10 . For Underfull \hbox (badness 2932) in paragraph at lines 5166--5168 []\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se- quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is given by [1354] [1355] [1356] [1357] Underfull \hbox (badness 1142) in paragraph at lines 5407--5419 \T1/ptm/m/n/10 For \T1/zi4/m/n/10 cov()\T1/ptm/m/n/10 , a non-Pearson method is un-usual but avail-able for the sake of com-plete-ness. [1358] [1359] Underfull \hbox (badness 2503) in paragraph at lines 5546--5550 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1360] Underfull \hbox (badness 1168) in paragraph at lines 5607--5612 []\T1/ptm/m/n/10 For Spear-man's test, p-values are com-puted us-ing al-go-rith m AS 89 for $\OML/cmm/m/it/10 n < \OT1/cmr/m/n/10 1290$ \T1/ptm/m/n/10 and [1361] [1362] [1363] [1364] [1365] [1366] [1367] Underfull \hbox (badness 8132) in paragraph at lines 6049--6054 \T1/ptm/m/n/10 then \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is a den-dro-gram of the sa me graph struc-ture as \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and for each node, [1368] [1369] [1370] [1371] [1372] Underfull \hbox (badness 7081) in paragraph at lines 6324--6327 []\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 10000) in paragraph at lines 6328--6330 []\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also [1373] [1374] [1375] [1376] [1377] Underfull \vbox (badness 3803) has occurred while \output is active [1378] [1379] [1380] [1381] [1382] [1383] [1384] [1385] Underfull \hbox (badness 10000) in paragraph at lines 7136--7139 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T 1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the [1386] [1387] Underfull \hbox (badness 10000) in paragraph at lines 7273--7276 []\T1/ptm/m/n/10 The CRAN task view on dis-tri-bu-tions, [][]$\T1/zi4/m/n/10 ht tps : / / cran . r-[]project . org / web / views / [1388] [1389] [1390] [1391] Underfull \vbox (badness 3803) has occurred while \output is active [1392] [1393] [1394] [1395] [1396] [1397] [1398] [1399] [1400] [1401] [1402] [1403] [1404] [1405] [1406] [1407] [1408] [1409] [1410] [1411] [1412] Underfull \hbox (badness 2626) in paragraph at lines 8771--8774 []\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1413] Underfull \hbox (badness 2503) in paragraph at lines 8871--8875 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1414] [1415] [1416] [1417] [1418] Overfull \hbox (6.88992pt too wide) in paragraph at lines 9205--9207 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Fligner-Killeen test of homogeneity of variances"\T1/ptm/m/n/10 . [1419] [1420] [1421] [1422] [1423] [1424] [1425] [1426] [1427] [1428] [1429] [1430] [1431] [1432] [1433] Underfull \hbox (badness 4518) in paragraph at lines 10132--10137 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1434] [1435] [1436] [1437] Underfull \hbox (badness 2142) in paragraph at lines 10474--10477 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ [1438] Underfull \hbox (badness 1253) in paragraph at lines 10493--10496 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][ ]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it- er-a-tion. Hence, [1439] Underfull \hbox (badness 1708) in paragraph at lines 10555--10559 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1440] [1441] [1442] [1443] [1444] [1445] Underfull \hbox (badness 1694) in paragraph at lines 10951--10954 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to Underfull \hbox (badness 1867) in paragraph at lines 10970--10979 \T1/ptm/m/n/10 in the row case. If ei-ther is miss-ing, as by de-fault, then th e or-der-ing of the cor-re- [1446] [1447] [1448] [1449] [1450] [1451] [1452] [1453]pdfTeX warning (ext4): d estination with the same identifier (name{Rfn.hat}) has been already used, dupl icate ignored \relax l.11417 \aliasA{hat}{influence.measures}{hat} [1454] [1455] Underfull \hbox (badness 1484) in paragraph at lines 11540--11542 []\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1456] [1457] [1458] [1459] [1460] [1461] [1462] [1463] [1464] Underfull \hbox (badness 4441) in paragraph at lines 12098--12100 []\T1/ptm/m/n/10 vector of dif-fer-enc-ing co-ef-fi-cients, so an ARMA model is fit-ted to Underfull \hbox (badness 10000) in paragraph at lines 12105--12107 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa ult[][][] \T1/ptm/m/n/10 when [1465] [1466] [1467] [1468] [1469] [1470] Underfull \hbox (badness 2894) in paragraph at lines 12439--12443 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1471] [1472] [1473] [1474] [1475] [1476] [1477] [1478] [1479] [1480] [1481] Underfull \hbox (badness 4518) in paragraph at lines 13134--13139 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1482] [1483] [1484] [1485] [1486] [1487] [1488] [1489] [1490] [1491] Underfull \hbox (badness 4518) in paragraph at lines 13781--13786 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1492] [1493] Underfull \hbox (badness 10000) in paragraph at lines 13919--13923 []\T1/ptm/m/n/10 Only for the (de-fault) case \T1/zi4/m/n/10 (surface = Underfull \hbox (badness 1199) in paragraph at lines 13926--13928 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if \T1/zi4/m/n/10 family \T1/ptm/m/n/10 is [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] [1503] [1504] [1505] [1506] [1507] [1508] [1509] [1510] [1511] Underfull \hbox (badness 2503) in paragraph at lines 14990--14994 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1512] [1513] [1514] [1515] [1516] [1517] [1518] [1519] Underfull \hbox (badness 1418) in paragraph at lines 15499--15505 []\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response \T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(, "offset") \T1 /ptm/m/n/10 and [1520] [1521] [1522] [1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530] [1531] [1532] [1533] [1534] [1535] [1536] [1537] [1538] [1539] [1540] [1541] [1542] [1543] [1544] [1545] Underfull \hbox (badness 2359) in paragraph at lines 17123--17125 []\T1/ptm/m/n/10 Douglas M. Bates and Saikat De-bRoy: David M. Gay for the For- tran code used by [1546] [1547] Underfull \vbox (badness 10000) has occurred while \output is active [1548] Underfull \vbox (badness 10000) has occurred while \output is active [1549] [1550] [1551] [1552] [1553] [1554] [1555] [1556] [1557] [1558] [1559] [1560] [1561] Underfull \hbox (badness 1377) in paragraph at lines 18034--18039 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 18039--18042 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 1184) in paragraph at lines 18052--18056 \T1/ptm/m/n/10 value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + reltol ) \T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 18060--18064 []\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \ T1/ptm/m/n/10 meth-ods if [1562] [1563] [1564] Underfull \vbox (badness 10000) has occurred while \output is active [1565] [1566] [1567] [1568] [1569] [1570] [1571] Underfull \hbox (badness 1337) in paragraph at lines 18676--18679 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1572] [1573] [1574] [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] [1584] Underfull \hbox (badness 5563) in paragraph at lines 19406--19408 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , add to al-read y ex-ist-ing plot. Only valid for Underfull \hbox (badness 1194) in paragraph at lines 19409--19412 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1585] [1586] [1587] [1588] [1589] [1590] Underfull \hbox (badness 2503) in paragraph at lines 19776--19779 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1591] Underfull \hbox (badness 10000) in paragraph at lines 19803--19805 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1 /ptm/m/n/10 or [1592] [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601] [1602] [1603] [1604] [1605] [1606] [1607] Underfull \hbox (badness 10000) in paragraph at lines 20803--20809 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][ ][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 , [1608] [1609] [1610] [1611] [1612] [1613] [1614] [1615] [1616] [1617] [1618] [1619] [1620] [1621] [1622] [1623] [1624] [1625] [1626] [1627] [1628] [1629] [1630] Underfull \hbox (badness 1337) in paragraph at lines 22138--22144 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1631] [1632] [1633] [1634] [1635] [1636] [1637] [1638] [1639] [1640] [1641] [1642] Underfull \hbox (badness 10000) in paragraph at lines 22931--22934 []\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by [1643] [1644] [1645] [1646] [1647] [1648] [1649] [1650] [1651] Underfull \hbox (badness 10000) in paragraph at lines 23508--23511 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run med(x, k) \T1/ptm/m/n/10 sim-ply has [1652] Underfull \hbox (badness 3690) in paragraph at lines 23559--23563 [][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's end point rule and is called by de-fault from [1653] [1654] [1655] [1656] [1657] [1658] [1659] [1660] Underfull \hbox (badness 3439) in paragraph at lines 24029--24035 [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSasympO rig[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSbiexp[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 SSfol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSfpl[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 SSgompertz[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 SSlogis[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 SSmicmen[][][]\T1/ptm/m/n/1 0 , [1661] [1662] [1663] [1664] [1665] [1666] [1667] [1668] [1669] Underfull \hbox (badness 10000) in paragraph at lines 24577--24582 []\T1/ptm/m/n/10 integer or [][]\T1/zi4/m/n/10 function[][][] \T1/ptm/m/n/10 gi v-ing the num-ber of knots to use when [1670] [1671] [1672] [1673] [1674] [1675] [1676] [1677] [1678] [1679] [1680] [1681] [1682] [1683] [1684] Underfull \vbox (badness 3803) has occurred while \output is active [1685] [1686] Underfull \hbox (badness 3514) in paragraph at lines 25593--25598 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1687] Underfull \hbox (badness 3514) in paragraph at lines 25655--25660 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1688] Underfull \hbox (badness 3514) in paragraph at lines 25712--25717 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1689] Underfull \hbox (badness 3514) in paragraph at lines 25773--25779 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1690] [1691] [1692] [1693] Underfull \hbox (badness 3514) in paragraph at lines 25986--25991 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion Underfull \hbox (badness 3514) in paragraph at lines 26042--26047 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1694] Underfull \hbox (badness 3514) in paragraph at lines 26099--26104 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1695] Underfull \hbox (badness 3514) in paragraph at lines 26154--26159 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1696] [1697] Underfull \hbox (badness 6691) in paragraph at lines 26223--26228 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p tm/m/n/10 . It is the value of the ex-pres-sion [1698] [1699] [1700] [1701] [1702] [1703] [1704] [1705] Underfull \hbox (badness 10000) in paragraph at lines 26747--26750 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex- Underfull \hbox (badness 10000) in paragraph at lines 26747--26750 \T1/ptm/m/n/10 trac-tion, which should be odd. If \T1/zi4/m/n/10 NULL\T1/ptm/m/ n/10 , the de-fault, [1706] [1707] [1708] [1709] [1710] [1711] [1712] [1713] [1714] [1715] Underfull \hbox (badness 5431) in paragraph at lines 27353--27355 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1716] [1717] [1718] [1719] Underfull \hbox (badness 5431) in paragraph at lines 27563--27566 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1720] [1721] [1722] [1723] [1724] Underfull \hbox (badness 1337) in paragraph at lines 27875--27879 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1725] [1726] Underfull \hbox (badness 10000) in paragraph at lines 27992--27995 []\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/ 10 ; cur-rently ex-cept for \T1/zi4/m/n/10 rt()\T1/ptm/m/n/10 , only for [1727] [1728] [1729] Underfull \hbox (badness 1616) in paragraph at lines 28175--28178 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1730] [1731] [1732] [1733] [1734] [1735] [1736] [1737] [1738] [1739] [1740] [1741] [1742] [1743] [1744] [1745] [1746] [1747] [1748] Underfull \hbox (badness 10000) in paragraph at lines 29302--29306 []\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect [1749] [1750] [1751] Underfull \vbox (badness 10000) has occurred while \output is active [1752] [1753] [1754] Underfull \hbox (badness 1337) in paragraph at lines 29666--29670 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1755] [1756] [1757] [1758] [1759] [1760] [1761] [1762] Underfull \hbox (badness 1337) in paragraph at lines 30150--30154 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1763] Underfull \hbox (badness 5161) in paragraph at lines 30243--30245 []\T1/ptm/m/n/10 an es-ti-mate of the lo-ca-tion pa-ram-e-ter. (Only present if ar-gu-ment [1764] [1765] [1766] [1767] [1768] [1769] Underfull \hbox (badness 10000) in paragraph at lines 30607--30612 []\T1/ptm/m/n/10 There is a \T1/zi4/m/n/10 summary \T1/ptm/m/n/10 method for co n-tin-gency ta-ble ob-jects cre-ated by \T1/zi4/m/n/10 table \T1/ptm/m/n/10 or [1770] [1771] [1772]) (./stats4-pkg.tex Chapter 11. [1773] [1774] [1775] [1776] [1777] [1778]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.show.Rdash.methods}) has been already used, dup licate ignored \relax l.407 ...Package \pkg{stats4}}{show.Rdash.methods} [1779] [1780] [1781] [1782]) (./tcltk-pkg.tex Chapter 12. [1783] [1784] [1785] [1786] [1787] [1788] [1789] Underfull \vbox (badness 10000) has occurred while \output is active [1790] Underfull \vbox (badness 10000) has occurred while \output is active [1791] Underfull \hbox (badness 1546) in paragraph at lines 664--671 []\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing any Tk or Tcl com-mand by sim-ply run-ning [1792] [1793] [1794] [1795] [1796] [1797] [1798] [1799] [1800] [1801] [1802] Underfull \hbox (badness 3375) in paragraph at lines 1407--1410 [][][]\T1/zi4/m/n/10 select.list[][][] \T1/ptm/m/n/10 (a text ver-sion ex-cept on Win-dows and the OS X GUI), [][]\T1/zi4/m/n/10 menu[][][] \T1/ptm/m/n/10 (wh ose [1803]) (./tools-pkg.tex [1804] Chapter 13. [1805] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1806] Underfull \hbox (badness 3039) in paragraph at lines 164--167 []\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1807] [1808] Underfull \hbox (badness 1308) in paragraph at lines 285--298 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 285--298 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 formatMastersthesis\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 285--298 \T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm /m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma tTechreport \T1/ptm/m/n/10 and [1809] [1810] Underfull \hbox (badness 3039) in paragraph at lines 389--391 []\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine to use. Over-rides any [1811] [1812] [1813] [1814] [1815] [1816] [1817] [1818] [1819] [1820] [1821] Underfull \hbox (badness 1635) in paragraph at lines 1050--1052 []\T1/ptm/m/n/10 Delete files in the tem-po-rary di-rec-tory? This op-tion is i g-nored when [1822] Underfull \hbox (badness 4441) in paragraph at lines 1126--1136 \T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe n-den-cies (de- [1823] Underfull \hbox (badness 1014) in paragraph at lines 1148--1150 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1154--1156 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous Underfull \hbox (badness 10000) in paragraph at lines 1185--1188 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1185--1188 \T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 , [1824] [1825] [1826] Underfull \hbox (badness 10000) in paragraph at lines 1348--1350 []\T1/ptm/m/n/10 Re-save PDF files (es-pe-cially vi-gnettes) more com-pactly. S up-port func-tion for [1827] [1828] [1829] Underfull \hbox (badness 7981) in paragraph at lines 1518--1522 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of Underfull \hbox (badness 1082) in paragraph at lines 1524--1526 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see [1830] [1831] [1832] [1833]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ignored \relax l.1721 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [1834] [1835] Underfull \hbox (badness 5726) in paragraph at lines 1847--1852 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/n/10 De pendsList \T1/ptm/m/n/10 ob-ject Underfull \hbox (badness 7221) in paragraph at lines 1847--1852 \T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo r in-stance if there was [1836] [1837] [1838] [1839] [1840] [1841] [1842] [1843] Underfull \hbox (badness 7981) in paragraph at lines 2323--2329 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1844] [1845] [1846] [1847] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/n' instead on input line 2607. [1848] [1849] [1850] [1851] Underfull \hbox (badness 1424) in paragraph at lines 2844--2846 []\T1/zi4/m/sl/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t or of links, as re-turned by [1852] [1853] [1854] [1855] [1856] [1857] [1858] [1859] [1860] [1861] [1862] Underfull \hbox (badness 10000) in paragraph at lines 3539--3541 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [1863] [1864] [1865] [1866] [1867] [1868] Underfull \hbox (badness 1838) in paragraph at lines 3919--3925 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 3919--3925 \T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [1869] [1870] Underfull \hbox (badness 5726) in paragraph at lines 3999--4004 []\T1/ptm/m/n/10 If \T1/zi4/m/sl/10 reduce \T1/ptm/m/n/10 is \T1/zi4/m/sl/10 TR UE\T1/ptm/m/n/10 , the sys-tem will col-lapse the fields in the \T1/zi4/m/sl/10 DependsList \T1/ptm/m/n/10 ob-ject Underfull \hbox (badness 7221) in paragraph at lines 3999--4004 \T1/ptm/m/n/10 such that a min-i-mal set of de-pen-den-cies are spec-i-fied (fo r in-stance if there was [1871] [1872] Underfull \hbox (badness 1688) in paragraph at lines 4142--4154 []\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to be used in the `\T 1/zi4/m/sl/10 PACKAGES\T1/ptm/m/n/10 ' and [1873] [1874] [1875] [1876]) (./utils-pkg.tex Chapter 14. [1877] Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/sl/10 insertions\T1/ptm/m/n/10 ', [1878] [1879] Underfull \hbox (badness 1454) in paragraph at lines 197--200 []\T1/ptm/m/n/10 logical in-di-cat-ing if the search should be case-insensitive , \T1/zi4/m/sl/10 TRUE \T1/ptm/m/n/10 by de- Underfull \hbox (badness 1540) in paragraph at lines 213--216 []\T1/zi4/m/sl/10 find \T1/ptm/m/n/10 is a dif-fer-ent user in-ter-face for the same task as \T1/zi4/m/sl/10 apropos\T1/ptm/m/n/10 . How-ever, by de-fault [1880] [1881] [1882] [1883] [1884] [1885] Underfull \hbox (badness 10000) in paragraph at lines 543--549 []\T1/ptm/m/n/10 Functions \T1/zi4/m/sl/10 aspell_package_Rd_files\T1/ptm/m/n/1 0 , \T1/zi4/m/sl/10 aspell_package_vignettes\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 543--549 \T1/zi4/m/sl/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/sl/10 aspel l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the [1886] Underfull \hbox (badness 5847) in paragraph at lines 656--662 []\T1/ptm/m/n/10 Argument \T1/zi4/m/sl/10 filters \T1/ptm/m/n/10 can be used to se-lect which of the pack-ages on the repos-i-to- Underfull \hbox (badness 4229) in paragraph at lines 656--662 \T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi 4/m/sl/10 NULL\T1/ptm/m/n/10 ) by func-tions such as [1887] Underfull \hbox (badness 3861) in paragraph at lines 724--729 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/sl/10 "O S_type"\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/sl/ 10 "License_is_FOSS"\T1/ptm/m/n/10 , [1888] [1889] [1890] [1891] [1892] Underfull \vbox (badness 10000) has occurred while \output is active [1893] [1894] [1895] [1896] [1897] Underfull \hbox (badness 1371) in paragraph at lines 1320--1322 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [1898] [1899] [1900] [1901] [1902] [1903] [1904] Underfull \hbox (badness 2057) in paragraph at lines 1812--1814 []\T1/ptm/m/n/10 None for \T1/zi4/m/sl/10 chooseCRANmirror()\T1/ptm/m/n/10 , th is func-tion is in-voked for its side ef-fect of up-dat-ing [1905] [1906] Underfull \hbox (badness 10000) in paragraph at lines 1913--1915 []\T1/ptm/m/n/10 One can in-clude an auto-generated pack-age ci-ta-tion in the `\T1/zi4/m/sl/10 CITATION\T1/ptm/m/n/10 ' file via [1907] Underfull \hbox (badness 5189) in paragraph at lines 2003--2005 []\T1/ptm/m/n/10 A list of keys that have been pre-vi-ously cited, to be used w hen [1908] [1909] [1910] [1911] Underfull \hbox (badness 1661) in paragraph at lines 2221--2228 []\T1/ptm/m/n/10 logical in-di-cat-ing if the re-sult should be sim-pli-fied to an [][]\T1/zi4/m/sl/10 array[][][] \T1/ptm/m/n/10 (typ-i- Underfull \hbox (badness 1990) in paragraph at lines 2238--2241 []\T1/ptm/m/n/10 a [][]\T1/zi4/m/sl/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4 /m/sl/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/sl/10 simplify \T1/ptm/m /n/10 ar-gu-ment above. In the lat-ter case, the iden-tity [1912] [1913] [1914] [1915] [1916] [1917] [1918] [1919] [1920] [1921] [1922] [1923] [1924] [1925] [1926] Underfull \hbox (badness 1412) in paragraph at lines 3235--3239 []\T1/ptm/m/n/10 The \T1/zi4/m/sl/10 "libcurl" \T1/ptm/m/n/10 and \T1/zi4/m/sl/ 10 "wget" \T1/ptm/m/n/10 meth-ods fol-low `\T1/zi4/m/sl/10 http://\T1/ptm/m/n/1 0 ' and `\T1/zi4/m/sl/10 https://\T1/ptm/m/n/10 ' redi-rec-tions: the [1927] Underfull \hbox (badness 1430) in paragraph at lines 3259--3267 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the \T1/zi4/m/sl/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the Underfull \hbox (badness 1231) in paragraph at lines 3302--3308 []\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers via en-vi-ron-ment vari-able [1928] [1929] [1930] [1931] [1932] [1933] [1934] [1935] [1936] [1937] [1938] [1939] [1940] [1941]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.4123 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.format.1}) has been already used, dupl icate ignored \relax l.4123 ...mat Unordered and Ordered Lists}{format} [1942] [1943] [1944] [1945] [1946] [1947] [1948] [1949] [1950] [1951] [1952] [1953] [1954] [1955] [1956] Underfull \hbox (badness 1371) in paragraph at lines 5073--5075 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/sl/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/sl/10 ccaddress \T1/ptm/m/n/10 to pass to [1957] Underfull \hbox (badness 1502) in paragraph at lines 5162--5167 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 5162--5167 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [1958] [1959] [1960] Underfull \hbox (badness 10000) in paragraph at lines 5335--5344 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, [1961] Underfull \hbox (badness 2150) in paragraph at lines 5398--5401 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [1962] [1963] Underfull \hbox (badness 3118) in paragraph at lines 5535--5537 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [1964] Underfull \hbox (badness 2409) in paragraph at lines 5568--5572 []\T1/ptm/m/n/10 To in-stall a source pack-age with com-piled code only for the sub-architecture used by [1965] Underfull \hbox (badness 1325) in paragraph at lines 5676--5680 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/sl/10 available.packag es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able [1966] Underfull \hbox (badness 10000) in paragraph at lines 5759--5762 []\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to be passed Underfull \hbox (badness 10000) in paragraph at lines 5759--5762 \T1/ptm/m/n/10 to \T1/zi4/m/sl/10 R CMD INSTALL \T1/ptm/m/n/10 for a source pac k-age in-stall. E.g., [1967] Underfull \hbox (badness 3219) in paragraph at lines 5832--5839 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/sl/ 10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 5832--5839 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 5832--5839 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by [1968] Underfull \hbox (badness 10000) in paragraph at lines 5912--5917 [][][]\T1/zi4/m/sl/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.packages [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n/ 10 , [1969] [1970] [1971] [1972] [1973] [1974] [1975] [1976] [1977] [1978] [1979] [1980] [1981] [1982] [1983] [1984] [1985] [1986] [1987] [1988] Underfull \hbox (badness 10000) in paragraph at lines 7124--7126 []\T1/zi4/m/sl/10 packageVersion() \T1/ptm/m/n/10 is a con-ve-nience short-cut, al-low-ing things like Underfull \hbox (badness 2310) in paragraph at lines 7129--7134 []\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [1989] [1990] [1991] [1992] [1993] [1994] [1995] [1996] [1997] Underfull \hbox (badness 1789) in paragraph at lines 7679--7681 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [1998] [1999] [2000] [2001] [2002] [2003] [2004] [2005] [2006] [2007] [2008] [2009] Underfull \hbox (badness 1097) in paragraph at lines 8504--8507 []\T1/ptm/m/n/10 The name \T1/zi4/m/sl/10 "clipboard" \T1/ptm/m/n/10 may also b e used on Win-dows, in which case [2010] [2011] Underfull \hbox (badness 3000) in paragraph at lines 8640--8645 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 read.t able[][][]\T1/ptm/m/n/10 ; [2012] [2013] [2014] [2015] [2016] [2017] [2018] [2019] [2020] Underfull \hbox (badness 2134) in paragraph at lines 9222--9227 [][][]\T1/zi4/m/sl/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/sl/10 write. table[][][]\T1/ptm/m/n/10 ; [2021] [2022] [2023] [2024] [2025] [2026] [2027] Underfull \hbox (badness 2469) in paragraph at lines 9655--9659 []\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia , The Free En-cy-clo-pe-dia. Underfull \hbox (badness 3428) in paragraph at lines 9655--9659 [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / w / index . php ? title = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac- [2028] [2029] [2030] [2031] [2032] [2033] Underfull \hbox (badness 10000) in paragraph at lines 9996--9998 []\T1/ptm/m/n/10 For \T1/zi4/m/sl/10 type = "txt"\T1/ptm/m/n/10 , [][]\T1/zi4/m /sl/10 file.show[][][] \T1/ptm/m/n/10 is used. [][]\T1/zi4/m/sl/10 vignette[][] []\T1/ptm/m/n/10 s are nicely viewed via [2034] [2035] Underfull \hbox (badness 2150) in paragraph at lines 10172--10174 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/ ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emac s / manual / [2036] [2037] [2038] Underfull \hbox (badness 10000) in paragraph at lines 10350--10354 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/sl/10 stylepath \T1/ptm/m/n/10 is n ow taken from the en-vi-ron-ment vari-able [2039] Underfull \hbox (badness 10000) in paragraph at lines 10381--10387 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a [2040] Underfull \hbox (badness 2096) in paragraph at lines 10499--10502 []\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing whether PNG fig-ures should be gen-er-ated. Ig-nored if Underfull \hbox (badness 1527) in paragraph at lines 10503--10506 []\T1/ptm/m/n/10 logical (\T1/zi4/m/sl/10 FALSE\T1/ptm/m/n/10 ), in-di-cat-ing whether JPEG fig-ures should be gen-er-ated. Ig-nored if [2041] Underfull \hbox (badness 1009) in paragraph at lines 10569--10580 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If [2042] [2043] [2044] [2045] [2046] Underfull \hbox (badness 3780) in paragraph at lines 10868--10872 []\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1 /zi4/m/sl/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via Underfull \hbox (badness 2635) in paragraph at lines 10884--10887 []\T1/ptm/m/n/10 Repository `\T1/zi4/m/sl/10 CRAN\T1/ptm/m/n/10 ' is treated sp e-cially: the value is taken from the cur-rent set-ting of [2047] [2048] [2049] [2050] [2051] [2052] Underfull \hbox (badness 5970) in paragraph at lines 11258--11261 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive [2053] [2054] [2055] Underfull \hbox (badness 10000) in paragraph at lines 11437--11439 []\T1/ptm/m/n/10 Options other than \T1/zi4/m/sl/10 memory = "none" \T1/ptm/m/n /10 ap-ply only to files pro-duced by [2056] [2057] [2058] [2059] [2060] [2061] Underfull \hbox (badness 10000) in paragraph at lines 11838--11841 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 http : / / pubs . opengroup . org / Underfull \hbox (badness 2245) in paragraph at lines 11838--11841 \T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9 2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX [2062] [2063] [2064] [2065] [2066] [2067] [2068] [2069] [2070] Underfull \hbox (badness 10000) in paragraph at lines 12368--12370 []\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/sl/10 destdir \T1/ptm/m/n/10 and \ T1/zi4/m/sl/10 dependencies \T1/ptm/m/n/10 to be passed to Underfull \hbox (badness 1052) in paragraph at lines 12371--12373 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. See [2071] Underfull \hbox (badness 10000) in paragraph at lines 12401--12406 []\T1/ptm/m/n/10 For how the list of suit-able avail-able pack-ages is de-ter-m ined see Underfull \hbox (badness 10000) in paragraph at lines 12401--12406 [][]\T1/zi4/m/sl/10 available.packages[][][]\T1/ptm/m/n/10 . \T1/zi4/m/sl/10 av ailable = NULL \T1/ptm/m/n/10 make a call to Underfull \hbox (badness 10000) in paragraph at lines 12430--12433 [][][]\T1/zi4/m/sl/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/1 0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 download.package s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/sl/10 installed.packages[][][]\T1/ptm/m/n /10 , [2072] [2073] [2074] [2075] Overfull \hbox (25.86961pt too wide) in paragraph at lines 12669--12672 [][][]\T1/zi4/m/sl/10 browseVignettes[][][] \T1/ptm/m/n/10 for an HTML-based vi -gnette browser; [][]\T1/zi4/m/sl/10 RShowDoc[][][](, package = "") [2076] [2077] Underfull \hbox (badness 1454) in paragraph at lines 12747--12751 []\T1/ptm/m/n/10 the char-ac-ter(s) to print at the end of each line (row). For ex-am-ple, [2078] Underfull \hbox (badness 10000) in paragraph at lines 12817--12819 []\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec- tion [2079] [2080] [2081]) [2082] (./fullrefman.ind [2083] [2084] [2085] [2086] [2087] [2088] [2089] [2090] [2091] [2092] [2093] [2094] [2095] [2096] [2097] [2098] [2099] [2100] [2101] [2102] [2103] [2104] [2105] [2106] [2107] [2108] [2109] [2110] [2111] [2112] [2113] [2114] [2115] [2116] [2117] [2118] [2119] [2120] [2121] [2122] [2123] [2124] [2125] [2126] [2127] [2128] [2129] [2130] [2131] [2132] [2133] [2134] [2135] [2136] [2137] [2138] [2139] [2140] [2141] [2142] Overfull \hbox (5.8567pt too wide) in paragraph at lines 11156--11158 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_depends Overfull \hbox (5.8567pt too wide) in paragraph at lines 11158--11160 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_results Overfull \hbox (5.8567pt too wide) in paragraph at lines 11160--11162 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_timings [2143] [2144] [2145] [2146] [2147] [2148] [2149] [2150] [2151]) (./fullrefman.aux) LaTeX Font Warning: Some font shapes were not available, defaults substituted. ) (see the transcript file for additional information)pdfTeX warning (dest): name {Rfn.write.matrix} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.dgTMatrix} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.glht} has been referenced but does not exist, r eplaced by a fixed one pdfTeX warning (dest): name{Rfn.survreg} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.coxph} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.stepAIC} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.rinvGauss} has been referenced but does not exi st, replaced by a fixed one 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does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getNamespace} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.chron} has been referenced but does not exist, replaced by a fixed one {/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc}{/usr/share/texlive/ texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}{/usr/share/texlive/texmf-dis t/fonts/enc/dvips/inconsolata/i4-t1-0.enc}< /usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb> Output written on fullrefman.pdf (2182 pages, 5793346 bytes). Transcript written on fullrefman.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-FAQ.texi This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/«PKGBUILDDIR»/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2015-06-24.23]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (/usr/share/texmf/tex/texinfo/txi-en.tex) [1{/var/lib/texmf/fonts/map/pdftex/up dmap/pdftex.map}] [-1] Chapter 1 Cross reference values unknown; you must run TeX again. [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] Chapter 4 [18] [19] Chapter 5 [20] [21] [22] [23] [24] Chapter 6 [25] [26] Chapter 7 [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] Underfull \hbox (badness 10000) in paragraph at lines 3362--3370 @texttt download.file()[] @textrm func-tion), a down-load method is cho-sen bas ed on the Overfull \hbox (50.07326pt too wide) in paragraph at lines 3377--3377 []@texttt options(download.file.method = "wininet", url.method = "wininet") @textrm (Windows)[] Overfull \hbox (81.49376pt too wide) in paragraph at lines 3378--3378 []@texttt options(download.file.method = "libcurl", url.method = "libcurl") @textrm (Linux and OS X)[] Chapter 8 [42] Chapter 9 [43] [44] Chapter 10 [45] [46] [47] ) (see the transcript file for additional information) Output written on R-FAQ.pdf (49 pages, 364953 bytes). Transcript written on R-FAQ.log. This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/«PKGBUILDDIR»/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2015-06-24.23]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-FAQ.aux) (/usr/share/texmf/tex/texinfo/txi-en.tex) [1{/var/lib/texmf/fonts/map/pdftex/up dmap/pdftex.map}] (./R-FAQ.toc [-1] [-2]) [-3] (./R-FAQ.toc) (./R-FAQ.toc) Chapter 1 [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] Chapter 4 [18] [19] Chapter 5 [20] [21] [22] [23] [24] Chapter 6 [25] [26] Chapter 7 [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] Underfull \hbox (badness 10000) in paragraph at lines 3362--3370 @texttt download.file()[] @textrm func-tion), a down-load method is cho-sen bas ed on the Overfull \hbox (50.07326pt too wide) in paragraph at lines 3377--3377 []@texttt options(download.file.method = "wininet", url.method = "wininet") @textrm (Windows)[] Overfull \hbox (81.49376pt too wide) in paragraph at lines 3378--3378 []@texttt options(download.file.method = "libcurl", url.method = "libcurl") @textrm (Linux and OS X)[] Chapter 8 [42] Chapter 9 [43] [44] Chapter 10 [45] [46] [47] ) (see the transcript file for additional information) Output written on R-FAQ.pdf (51 pages, 380797 bytes). Transcript written on R-FAQ.log. This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/«PKGBUILDDIR»/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2015-06-24.23]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-FAQ.aux) (/usr/share/texmf/tex/texinfo/txi-en.tex) [1{/var/lib/texmf/fonts/map/pdftex/up dmap/pdftex.map}] (./R-FAQ.toc [-1] [-2]) [-3] (./R-FAQ.toc) (./R-FAQ.toc) Chapter 1 [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] Chapter 4 [18] [19] Chapter 5 [20] [21] [22] [23] [24] Chapter 6 [25] [26] Chapter 7 [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] Underfull \hbox (badness 10000) in paragraph at lines 3362--3370 @texttt download.file()[] @textrm func-tion), a down-load method is cho-sen bas ed on the Overfull \hbox (50.07326pt too wide) in paragraph at lines 3377--3377 []@texttt options(download.file.method = "wininet", url.method = "wininet") @textrm (Windows)[] Overfull \hbox (81.49376pt too wide) in paragraph at lines 3378--3378 []@texttt options(download.file.method = "libcurl", url.method = "libcurl") @textrm (Linux and OS X)[] Chapter 8 [42] Chapter 9 [43] [44] Chapter 10 [45] [46] [47] ) (see the transcript file for additional information) Output written on R-FAQ.pdf (51 pages, 380797 bytes). Transcript written on R-FAQ.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-admin.texi This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/«PKGBUILDDIR»/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2015-06-24.23]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 [1] Chapter 2 [2] Cross reference values unknown; you must run TeX again. [3] [4] [5] [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] [15] [16] [17] [18] Chapter 4 [19] [20] Underfull \hbox (badness 10000) in paragraph at lines 1794--1803 @texttt org.r-project.R.x86_64.GUI.pkg[]@textrm , @texttt org.r-project.x86_64. tcltk.x11[] @textrm and [21] Chapter 5 [22] Chapter 6 [23] Overfull \hbox (14.94176pt too wide) in paragraph at lines 1923--1923 []@texttt [1] "datasets" "utils" "grDevices" "graphics" "stats" "met hods"[] [24] [25] Underfull \hbox (badness 6842) in paragraph at lines 2114--2123 []@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age s. No ad-di- [26] Overfull \hbox (50.73642pt too wide) in paragraph at lines 2213--2223 []@textrm The de-fault com-pil-ers spec-i-fied in @texttt /Library/Frameworks/R .framework/Resources/etc/Makeconf[] [27] [28] [29] [30] Overfull \hbox (20.69044pt too wide) in paragraph at lines 2499--2499 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl lib-dir @text tt --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 2519--2519 []@texttt .../bin/i386/Rcmd check -l @textttsl lib-dir @texttt --extra-arch -- install=check:@textttsl pkg@texttt .log @textttsl pkg[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 2520--2520 []@texttt .../bin/x64/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --i nstall=check:@textttsl pkg@texttt .log @textttsl pkg[] Chapter 7 [31] [32] [33] Chapter 8 [34] Chapter 9 [35] [36] [37] Appendix A [38] [39] [40] [41] [42] [43] [44] [45] [46] Overfull \hbox (26.43913pt too wide) in paragraph at lines 3744--3744 []@texttt ln -s /opt/acml5.1.0/gfortran64_mp/lib/libacml_mp.so @textttsl R_HOM E@texttt /lib/libRblas.so[] [47] Appendix B [48] [49] [50] [51] [52] [53] Appendix C [54] [55] [56] [57] Overfull \hbox (22.38167pt too wide) in paragraph at lines 4602--4606 []@textrm Others have re-ported suc-cess with ver-sions 10.x and 11.x. % https: //stat.ethz.ch/pipermail/r- [58] [59] [60] Overfull \hbox (106.92076pt too wide) in paragraph at lines 4791--4791 []@texttt export PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconf ig:/usr/lib/pkgconfig[] [61] [62] Overfull \hbox (66.67995pt too wide) in paragraph at lines 4931--4931 []@texttt PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr /lib/pkgconfig[] [63] Underfull \hbox (badness 10000) in paragraph at lines 5061--5066 []@textrm To see what com-pat-i-ble ver-sions of Java are cur-rently in-stalled , run [64] Overfull \hbox (14.94176pt too wide) in paragraph at lines 5084--5084 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/jdk1.8.0_51.jdk/Contents /Home[] [65] [66] Underfull \hbox (badness 10000) in paragraph at lines 5242--5248 @texttt LDFLAGS=-L/usr/local/lib/sparcv9[] @textrm or @texttt LDFLAGS=-L/usr/lo cal/lib/amd64[] @textrm as Overfull \hbox (14.94176pt too wide) in paragraph at lines 5251--5251 []@texttt PKG_CONFIG_PATH=/opt/csw/lib/sparcv9/pkgconfig:/usr/lib/sparcv9/pkgc onfig[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 5258--5258 []@texttt JAVA_CPPFLAGS="-I${JAVA_HOME}/../include -I${JAVA_HOME}/../include/s olaris"[] [67] [68] [69] [70] [71] [72] Appendix D [73] [74] [75] (Function and variable index) [76] (Concept index) [77] (Environment variable index) [78] [79] ) (see the transcript file for additional information) Output written on R-admin.pdf (82 pages, 459643 bytes). Transcript written on R-admin.log. This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/«PKGBUILDDIR»/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2015-06-24.23]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-admin.aux) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-admin.toc [-1] [-2]) [-3] [-4] (./R-admin.toc) (./R-admin.toc) Chapter 1 [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] [15] [16] [17] [18] Chapter 4 [19] [20] Underfull \hbox (badness 10000) in paragraph at lines 1794--1803 @texttt org.r-project.R.x86_64.GUI.pkg[]@textrm , @texttt org.r-project.x86_64. tcltk.x11[] @textrm and [21] Chapter 5 [22] Chapter 6 [23] Overfull \hbox (14.94176pt too wide) in paragraph at lines 1923--1923 []@texttt [1] "datasets" "utils" "grDevices" "graphics" "stats" "met hods"[] [24] [25] Underfull \hbox (badness 6842) in paragraph at lines 2114--2123 []@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age s. No ad-di- [26] Overfull \hbox (50.73642pt too wide) in paragraph at lines 2213--2223 []@textrm The de-fault com-pil-ers spec-i-fied in @texttt /Library/Frameworks/R .framework/Resources/etc/Makeconf[] [27] [28] [29] [30] Overfull \hbox (20.69044pt too wide) in paragraph at lines 2499--2499 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl lib-dir @text tt --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 2519--2519 []@texttt .../bin/i386/Rcmd check -l @textttsl lib-dir @texttt --extra-arch -- install=check:@textttsl pkg@texttt .log @textttsl pkg[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 2520--2520 []@texttt .../bin/x64/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --i nstall=check:@textttsl pkg@texttt .log @textttsl pkg[] Chapter 7 [31] [32] [33] Chapter 8 [34] Chapter 9 [35] [36] [37] Appendix A [38] [39] [40] [41] [42] [43] [44] [45] [46] Overfull \hbox (26.43913pt too wide) in paragraph at lines 3744--3744 []@texttt ln -s /opt/acml5.1.0/gfortran64_mp/lib/libacml_mp.so @textttsl R_HOM E@texttt /lib/libRblas.so[] [47] Appendix B [48] [49] [50] [51] [52] [53] Appendix C [54] [55] [56] [57] Overfull \hbox (22.38167pt too wide) in paragraph at lines 4602--4606 []@textrm Others have re-ported suc-cess with ver-sions 10.x and 11.x. % https: //stat.ethz.ch/pipermail/r- [58] [59] [60] Overfull \hbox (106.92076pt too wide) in paragraph at lines 4791--4791 []@texttt export PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconf ig:/usr/lib/pkgconfig[] [61] [62] Overfull \hbox (66.67995pt too wide) in paragraph at lines 4931--4931 []@texttt PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr /lib/pkgconfig[] [63] Underfull \hbox (badness 10000) in paragraph at lines 5061--5066 []@textrm To see what com-pat-i-ble ver-sions of Java are cur-rently in-stalled , run [64] Overfull \hbox (14.94176pt too wide) in paragraph at lines 5084--5084 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/jdk1.8.0_51.jdk/Contents /Home[] [65] [66] Underfull \hbox (badness 10000) in paragraph at lines 5242--5248 @texttt LDFLAGS=-L/usr/local/lib/sparcv9[] @textrm or @texttt LDFLAGS=-L/usr/lo cal/lib/amd64[] @textrm as Overfull \hbox (14.94176pt too wide) in paragraph at lines 5251--5251 []@texttt PKG_CONFIG_PATH=/opt/csw/lib/sparcv9/pkgconfig:/usr/lib/sparcv9/pkgc onfig[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 5258--5258 []@texttt JAVA_CPPFLAGS="-I${JAVA_HOME}/../include -I${JAVA_HOME}/../include/s olaris"[] [67] [68] [69] [70] [71] [72] Appendix D [73] [74] [75] (Function and variable index) [76] (./R-admin.vrs) (Concept index) [77] (./R-admin.cps) (Environment variable index) [78] (./R-admin.ens) [79] ) (see the transcript file for additional information) Output written on R-admin.pdf (85 pages, 506091 bytes). Transcript written on R-admin.log. This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/«PKGBUILDDIR»/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2015-06-24.23]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-admin.aux) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-admin.toc [-1] [-2]) [-3] [-4] (./R-admin.toc) (./R-admin.toc) Chapter 1 [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] [15] [16] [17] [18] Chapter 4 [19] [20] Underfull \hbox (badness 10000) in paragraph at lines 1794--1803 @texttt org.r-project.R.x86_64.GUI.pkg[]@textrm , @texttt org.r-project.x86_64. tcltk.x11[] @textrm and [21] Chapter 5 [22] Chapter 6 [23] Overfull \hbox (14.94176pt too wide) in paragraph at lines 1923--1923 []@texttt [1] "datasets" "utils" "grDevices" "graphics" "stats" "met hods"[] [24] [25] Underfull \hbox (badness 6842) in paragraph at lines 2114--2123 []@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age s. No ad-di- [26] Overfull \hbox (50.73642pt too wide) in paragraph at lines 2213--2223 []@textrm The de-fault com-pil-ers spec-i-fied in @texttt /Library/Frameworks/R .framework/Resources/etc/Makeconf[] [27] [28] [29] [30] Overfull \hbox (20.69044pt too wide) in paragraph at lines 2499--2499 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl lib-dir @text tt --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 2519--2519 []@texttt .../bin/i386/Rcmd check -l @textttsl lib-dir @texttt --extra-arch -- install=check:@textttsl pkg@texttt .log @textttsl pkg[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 2520--2520 []@texttt .../bin/x64/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --i nstall=check:@textttsl pkg@texttt .log @textttsl pkg[] Chapter 7 [31] [32] [33] Chapter 8 [34] Chapter 9 [35] [36] [37] Appendix A [38] [39] [40] [41] [42] [43] [44] [45] [46] Overfull \hbox (26.43913pt too wide) in paragraph at lines 3744--3744 []@texttt ln -s /opt/acml5.1.0/gfortran64_mp/lib/libacml_mp.so @textttsl R_HOM E@texttt /lib/libRblas.so[] [47] Appendix B [48] [49] [50] [51] [52] [53] Appendix C [54] [55] [56] [57] Overfull \hbox (22.38167pt too wide) in paragraph at lines 4602--4606 []@textrm Others have re-ported suc-cess with ver-sions 10.x and 11.x. % https: //stat.ethz.ch/pipermail/r- [58] [59] [60] Overfull \hbox (106.92076pt too wide) in paragraph at lines 4791--4791 []@texttt export PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconf ig:/usr/lib/pkgconfig[] [61] [62] Overfull \hbox (66.67995pt too wide) in paragraph at lines 4931--4931 []@texttt PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr /lib/pkgconfig[] [63] Underfull \hbox (badness 10000) in paragraph at lines 5061--5066 []@textrm To see what com-pat-i-ble ver-sions of Java are cur-rently in-stalled , run [64] Overfull \hbox (14.94176pt too wide) in paragraph at lines 5084--5084 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/jdk1.8.0_51.jdk/Contents /Home[] [65] [66] Underfull \hbox (badness 10000) in paragraph at lines 5242--5248 @texttt LDFLAGS=-L/usr/local/lib/sparcv9[] @textrm or @texttt LDFLAGS=-L/usr/lo cal/lib/amd64[] @textrm as Overfull \hbox (14.94176pt too wide) in paragraph at lines 5251--5251 []@texttt PKG_CONFIG_PATH=/opt/csw/lib/sparcv9/pkgconfig:/usr/lib/sparcv9/pkgc onfig[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 5258--5258 []@texttt JAVA_CPPFLAGS="-I${JAVA_HOME}/../include -I${JAVA_HOME}/../include/s olaris"[] [67] [68] [69] [70] [71] [72] Appendix D [73] [74] [75] (Function and variable index) [76] (./R-admin.vrs) (Concept index) [77] (./R-admin.cps) (Environment variable index) [78] (./R-admin.ens) [79] ) (see the transcript file for additional information) Output written on R-admin.pdf (85 pages, 506089 bytes). Transcript written on R-admin.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-data.texi This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/«PKGBUILDDIR»/doc/manual/R-data.t2d/pdf/xtr/R-data.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2015-06-24.23]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Acknowledgements) Underfull \hbox (badness 10000) in paragraph at lines 87--87 [][]@textbf DBI Underfull \hbox (badness 10000) in paragraph at lines 87--87 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 87--87 @texttt org / Overfull \hbox (4.50087pt too wide) in paragraph at lines 87--87 @texttt package=DBI[]@textrm )[][]| Overfull \hbox (8.53186pt too wide) in paragraph at lines 88--88 [][]@textbf dataframes2xls Underfull \hbox (badness 10000) in paragraph at lines 88--88 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 88--88 @texttt org / Overfull \hbox (67.73643pt too wide) in paragraph at lines 88--88 @texttt package=dataframes2xls[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 89--89 [][]@textbf foreign Underfull \hbox (badness 10000) in paragraph at lines 89--89 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 89--89 @texttt org / Overfull \hbox (27.49562pt too wide) in paragraph at lines 89--89 @texttt package=foreign[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 90--90 [][]@textbf gdata Underfull \hbox (badness 10000) in paragraph at lines 90--90 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 90--90 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 90--90 @texttt package=gdata[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 91--91 [][]@textbf hdf5 Underfull \hbox (badness 10000) in paragraph at lines 91--91 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 91--91 @texttt org / Overfull \hbox (10.24956pt too wide) in paragraph at lines 91--91 @texttt package=hdf5[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 92--92 [][]@textbf ncdf Underfull \hbox (badness 10000) in paragraph at lines 92--92 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 92--92 @texttt org / Overfull \hbox (13.29123pt too wide) in paragraph at lines 92--92 @texttt package=ncdf[]@textrm )[][], Underfull \hbox (badness 10000) in paragraph at lines 92--92 [][]@textbf ncdf4 Underfull \hbox (badness 10000) in paragraph at lines 92--92 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 92--92 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 92--92 @texttt package=ncdf4[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 93--93 [][]@textbf rJava Underfull \hbox (badness 10000) in paragraph at lines 93--93 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 93--93 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 93--93 @texttt package=rJava[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 94--94 [][]@textbf RJDBC Underfull \hbox (badness 10000) in paragraph at lines 94--94 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 94--94 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 94--94 @texttt package=RJDBC[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 95--95 [][]@textbf RMySQL Underfull \hbox (badness 10000) in paragraph at lines 95--95 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 95--95 @texttt org / Overfull \hbox (21.74693pt too wide) in paragraph at lines 95--95 @texttt package=RMySQL[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 96--96 [][]@textbf RNetCDF Underfull \hbox (badness 10000) in paragraph at lines 96--96 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 96--96 @texttt org / Overfull \hbox (27.49562pt too wide) in paragraph at lines 96--96 @texttt package=RNetCDF[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 97--97 [][]@textbf RODBC Underfull \hbox (badness 10000) in paragraph at lines 97--97 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 97--97 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 97--97 @texttt package=RODBC[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 98--98 [][]@textbf ROracle Underfull \hbox (badness 10000) in paragraph at lines 98--98 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 98--98 @texttt org / Overfull \hbox (27.49562pt too wide) in paragraph at lines 98--98 @texttt package=ROracle[]@textrm )[][]| Overfull \hbox (2.70708pt too wide) in paragraph at lines 99--99 [][]@textbf RPostgreSQL Underfull \hbox (badness 10000) in paragraph at lines 99--99 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 99--99 @texttt org / Overfull \hbox (50.49037pt too wide) in paragraph at lines 99--99 @texttt package=RPostgreSQL[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 102--102 [][]@textbf RSQLite Underfull \hbox (badness 10000) in paragraph at lines 102--102 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 102--102 @texttt org / Overfull \hbox (27.49562pt too wide) in paragraph at lines 102--102 @texttt package=RSQLite[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 104--104 [][]@textbf WriteXLS Underfull \hbox (badness 10000) in paragraph at lines 104--104 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 104--104 @texttt org / Overfull \hbox (33.24431pt too wide) in paragraph at lines 104--104 @texttt package=WriteXLS[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 105--105 [][]@textbf XLConnect Underfull \hbox (badness 10000) in paragraph at lines 105--105 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 105--105 @texttt org / Overfull \hbox (38.993pt too wide) in paragraph at lines 105--105 @texttt package=XLConnect[]@textrm )[][]| Overfull \hbox (2.49414pt too wide) in paragraph at lines 106--106 [][]@textbf xlsReadWrite Underfull \hbox (badness 10000) in paragraph at lines 106--106 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 106--106 @texttt org / Overfull \hbox (56.23906pt too wide) in paragraph at lines 106--106 @texttt package=xlsReadWrite[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 107--107 [][]@textbf XML Underfull \hbox (badness 10000) in paragraph at lines 107--107 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 107--107 @texttt org / Overfull \hbox (4.50087pt too wide) in paragraph at lines 107--107 @texttt package=XML[]@textrm )[][]| [1] [2] Chapter 1 [3] Cross reference values unknown; you must run TeX again. [4] [5] [6] [7] Chapter 2 [8] [9] [10] [11] [12] [13] [14] Chapter 3 [15] [16] Chapter 4 [17] [18] [19] [20] [21] [22] [23] Chapter 5 [24] Chapter 6 [25] Chapter 7 [26] [27] [28] [29] [30] Chapter 8 [31] Chapter 9 [32] Appendix A [33] (Function and variable index) [34] (Concept index) [35] [36] ) (see the transcript file for additional information) Output written on R-data.pdf (39 pages, 276092 bytes). Transcript written on R-data.log. This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/«PKGBUILDDIR»/doc/manual/R-data.t2d/pdf/xtr/R-data.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2015-06-24.23]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-data.aux ) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-data.toc [-1]) [-2] (./R-data.toc) (./R-data.toc) (Acknowledgements) Underfull \hbox (badness 10000) in paragraph at lines 87--87 [][]@textbf DBI Underfull \hbox (badness 10000) in paragraph at lines 87--87 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 87--87 @texttt org / Overfull \hbox (4.50087pt too wide) in paragraph at lines 87--87 @texttt package=DBI[]@textrm )[][]| Overfull \hbox (8.53186pt too wide) in paragraph at lines 88--88 [][]@textbf dataframes2xls Underfull \hbox (badness 10000) in paragraph at lines 88--88 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 88--88 @texttt org / Overfull \hbox (67.73643pt too wide) in paragraph at lines 88--88 @texttt package=dataframes2xls[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 89--89 [][]@textbf foreign Underfull \hbox (badness 10000) in paragraph at lines 89--89 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 89--89 @texttt org / Overfull \hbox (27.49562pt too wide) in paragraph at lines 89--89 @texttt package=foreign[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 90--90 [][]@textbf gdata Underfull \hbox (badness 10000) in paragraph at lines 90--90 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 90--90 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 90--90 @texttt package=gdata[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 91--91 [][]@textbf hdf5 Underfull \hbox (badness 10000) in paragraph at lines 91--91 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 91--91 @texttt org / Overfull \hbox (10.24956pt too wide) in paragraph at lines 91--91 @texttt package=hdf5[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 92--92 [][]@textbf ncdf Underfull \hbox (badness 10000) in paragraph at lines 92--92 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 92--92 @texttt org / Overfull \hbox (13.29123pt too wide) in paragraph at lines 92--92 @texttt package=ncdf[]@textrm )[][], Underfull \hbox (badness 10000) in paragraph at lines 92--92 [][]@textbf ncdf4 Underfull \hbox (badness 10000) in paragraph at lines 92--92 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 92--92 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 92--92 @texttt package=ncdf4[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 93--93 [][]@textbf rJava Underfull \hbox (badness 10000) in paragraph at lines 93--93 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 93--93 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 93--93 @texttt package=rJava[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 94--94 [][]@textbf RJDBC Underfull \hbox (badness 10000) in paragraph at lines 94--94 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 94--94 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 94--94 @texttt package=RJDBC[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 95--95 [][]@textbf RMySQL Underfull \hbox (badness 10000) in paragraph at lines 95--95 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 95--95 @texttt org / Overfull \hbox (21.74693pt too wide) in paragraph at lines 95--95 @texttt package=RMySQL[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 96--96 [][]@textbf RNetCDF Underfull \hbox (badness 10000) in paragraph at lines 96--96 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 96--96 @texttt org / Overfull \hbox (27.49562pt too wide) in paragraph at lines 96--96 @texttt package=RNetCDF[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 97--97 [][]@textbf RODBC Underfull \hbox (badness 10000) in paragraph at lines 97--97 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 97--97 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 97--97 @texttt package=RODBC[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 98--98 [][]@textbf ROracle Underfull \hbox (badness 10000) in paragraph at lines 98--98 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 98--98 @texttt org / Overfull \hbox (27.49562pt too wide) in paragraph at lines 98--98 @texttt package=ROracle[]@textrm )[][]| Overfull \hbox (2.70708pt too wide) in paragraph at lines 99--99 [][]@textbf RPostgreSQL Underfull \hbox (badness 10000) in paragraph at lines 99--99 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 99--99 @texttt org / Overfull \hbox (50.49037pt too wide) in paragraph at lines 99--99 @texttt package=RPostgreSQL[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 102--102 [][]@textbf RSQLite Underfull \hbox (badness 10000) in paragraph at lines 102--102 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 102--102 @texttt org / Overfull \hbox (27.49562pt too wide) in paragraph at lines 102--102 @texttt package=RSQLite[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 104--104 [][]@textbf WriteXLS Underfull \hbox (badness 10000) in paragraph at lines 104--104 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 104--104 @texttt org / Overfull \hbox (33.24431pt too wide) in paragraph at lines 104--104 @texttt package=WriteXLS[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 105--105 [][]@textbf XLConnect Underfull \hbox (badness 10000) in paragraph at lines 105--105 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 105--105 @texttt org / Overfull \hbox (38.993pt too wide) in paragraph at lines 105--105 @texttt package=XLConnect[]@textrm )[][]| Overfull \hbox (2.49414pt too wide) in paragraph at lines 106--106 [][]@textbf xlsReadWrite Underfull \hbox (badness 10000) in paragraph at lines 106--106 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 106--106 @texttt org / Overfull \hbox (56.23906pt too wide) in paragraph at lines 106--106 @texttt package=xlsReadWrite[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 107--107 [][]@textbf XML Underfull \hbox (badness 10000) in paragraph at lines 107--107 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 107--107 @texttt org / Overfull \hbox (4.50087pt too wide) in paragraph at lines 107--107 @texttt package=XML[]@textrm )[][]| [1] [2] Chapter 1 [3] [4] [5] [6] [7] Chapter 2 [8] [9] [10] [11] [12] [13] [14] Chapter 3 [15] [16] Chapter 4 [17] [18] [19] [20] [21] [22] [23] Chapter 5 [24] Chapter 6 [25] Chapter 7 [26] [27] [28] [29] [30] Chapter 8 [31] Chapter 9 [32] Appendix A [33] (Function and variable index) [34] (./R-data.vrs [35]) (Concept index) [36] (./R-data.cps) [37] ) (see the transcript file for additional information) Output written on R-data.pdf (41 pages, 315416 bytes). Transcript written on R-data.log. This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/«PKGBUILDDIR»/doc/manual/R-data.t2d/pdf/xtr/R-data.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2015-06-24.23]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-data.aux ) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-data.toc [-1]) [-2] (./R-data.toc) (./R-data.toc) (Acknowledgements) Underfull \hbox (badness 10000) in paragraph at lines 87--87 [][]@textbf DBI Underfull \hbox (badness 10000) in paragraph at lines 87--87 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 87--87 @texttt org / Overfull \hbox (4.50087pt too wide) in paragraph at lines 87--87 @texttt package=DBI[]@textrm )[][]| Overfull \hbox (8.53186pt too wide) in paragraph at lines 88--88 [][]@textbf dataframes2xls Underfull \hbox (badness 10000) in paragraph at lines 88--88 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 88--88 @texttt org / Overfull \hbox (67.73643pt too wide) in paragraph at lines 88--88 @texttt package=dataframes2xls[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 89--89 [][]@textbf foreign Underfull \hbox (badness 10000) in paragraph at lines 89--89 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 89--89 @texttt org / Overfull \hbox (27.49562pt too wide) in paragraph at lines 89--89 @texttt package=foreign[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 90--90 [][]@textbf gdata Underfull \hbox (badness 10000) in paragraph at lines 90--90 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 90--90 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 90--90 @texttt package=gdata[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 91--91 [][]@textbf hdf5 Underfull \hbox (badness 10000) in paragraph at lines 91--91 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 91--91 @texttt org / Overfull \hbox (10.24956pt too wide) in paragraph at lines 91--91 @texttt package=hdf5[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 92--92 [][]@textbf ncdf Underfull \hbox (badness 10000) in paragraph at lines 92--92 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 92--92 @texttt org / Overfull \hbox (13.29123pt too wide) in paragraph at lines 92--92 @texttt package=ncdf[]@textrm )[][], Underfull \hbox (badness 10000) in paragraph at lines 92--92 [][]@textbf ncdf4 Underfull \hbox (badness 10000) in paragraph at lines 92--92 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 92--92 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 92--92 @texttt package=ncdf4[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 93--93 [][]@textbf rJava Underfull \hbox (badness 10000) in paragraph at lines 93--93 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 93--93 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 93--93 @texttt package=rJava[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 94--94 [][]@textbf RJDBC Underfull \hbox (badness 10000) in paragraph at lines 94--94 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 94--94 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 94--94 @texttt package=RJDBC[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 95--95 [][]@textbf RMySQL Underfull \hbox (badness 10000) in paragraph at lines 95--95 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 95--95 @texttt org / Overfull \hbox (21.74693pt too wide) in paragraph at lines 95--95 @texttt package=RMySQL[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 96--96 [][]@textbf RNetCDF Underfull \hbox (badness 10000) in paragraph at lines 96--96 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 96--96 @texttt org / Overfull \hbox (27.49562pt too wide) in paragraph at lines 96--96 @texttt package=RNetCDF[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 97--97 [][]@textbf RODBC Underfull \hbox (badness 10000) in paragraph at lines 97--97 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 97--97 @texttt org / Overfull \hbox (15.99825pt too wide) in paragraph at lines 97--97 @texttt package=RODBC[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 98--98 [][]@textbf ROracle Underfull \hbox (badness 10000) in paragraph at lines 98--98 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 98--98 @texttt org / Overfull \hbox (27.49562pt too wide) in paragraph at lines 98--98 @texttt package=ROracle[]@textrm )[][]| Overfull \hbox (2.70708pt too wide) in paragraph at lines 99--99 [][]@textbf RPostgreSQL Underfull \hbox (badness 10000) in paragraph at lines 99--99 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 99--99 @texttt org / Overfull \hbox (50.49037pt too wide) in paragraph at lines 99--99 @texttt package=RPostgreSQL[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 102--102 [][]@textbf RSQLite Underfull \hbox (badness 10000) in paragraph at lines 102--102 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 102--102 @texttt org / Overfull \hbox (27.49562pt too wide) in paragraph at lines 102--102 @texttt package=RSQLite[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 104--104 [][]@textbf WriteXLS Underfull \hbox (badness 10000) in paragraph at lines 104--104 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 104--104 @texttt org / Overfull \hbox (33.24431pt too wide) in paragraph at lines 104--104 @texttt package=WriteXLS[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 105--105 [][]@textbf XLConnect Underfull \hbox (badness 10000) in paragraph at lines 105--105 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 105--105 @texttt org / Overfull \hbox (38.993pt too wide) in paragraph at lines 105--105 @texttt package=XLConnect[]@textrm )[][]| Overfull \hbox (2.49414pt too wide) in paragraph at lines 106--106 [][]@textbf xlsReadWrite Underfull \hbox (badness 10000) in paragraph at lines 106--106 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 106--106 @texttt org / Overfull \hbox (56.23906pt too wide) in paragraph at lines 106--106 @texttt package=xlsReadWrite[]@textrm )[][]| Underfull \hbox (badness 10000) in paragraph at lines 107--107 [][]@textbf XML Underfull \hbox (badness 10000) in paragraph at lines 107--107 @texttt CRAN . Underfull \hbox (badness 10000) in paragraph at lines 107--107 @texttt org / Overfull \hbox (4.50087pt too wide) in paragraph at lines 107--107 @texttt package=XML[]@textrm )[][]| [1] [2] Chapter 1 [3] [4] [5] [6] [7] Chapter 2 [8] [9] [10] [11] [12] [13] [14] Chapter 3 [15] [16] Chapter 4 [17] [18] [19] [20] [21] [22] [23] Chapter 5 [24] Chapter 6 [25] Chapter 7 [26] [27] [28] [29] [30] Chapter 8 [31] Chapter 9 [32] Appendix A [33] (Function and variable index) [34] (./R-data.vrs [35]) (Concept index) [36] (./R-data.cps) [37] ) (see the transcript file for additional information) Output written on R-data.pdf (41 pages, 315439 bytes). Transcript written on R-data.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-exts.texi This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/«PKGBUILDDIR»/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2015-06-24.23]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Acknowledgements) Chapter 1 [1] Cross reference values unknown; you must run TeX again. [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 494--497 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] Underfull \hbox (badness 10000) in paragraph at lines 1820--1823 []@textrm [@texttt libRlapack[] @textrm in-cludes all the double-precision LA- PACK rou-tines Overfull \hbox (14.94176pt too wide) in paragraph at lines 1864--1864 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF LAGS)[] [24] [25] [26] [27] Overfull \hbox (67.78206pt too wide) in paragraph at lines 2162--2162 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (53.60722pt too wide) in paragraph at lines 2164--2164 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [28] [29] Overfull \hbox (16.92342pt too wide) in paragraph at lines 2303--2303 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar e defined.[] [30] [31] [32] Overfull \hbox (2.98494pt too wide) in paragraph at lines 2526--2528 [][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v er-sions such as @smalltt ~/.R/check.Renviron.i386[] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] Overfull \hbox (14.94176pt too wide) in paragraph at lines 4434--4434 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@ euro"[] [58] [59] [60] [61] Overfull \hbox (13.62822pt too wide) in paragraph at lines 4764--4764 []@texttt #define dngettext(pkg, String, StringP, N) (N > 1 ? StringP : String )[] [62] [63] Chapter 2 [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] Underfull \hbox (badness 10000) in paragraph at lines 6018--6025 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [79] [80] [81] [82] Underfull \hbox (badness 10000) in paragraph at lines 6337--6341 []@textrm As of R ver-sion 3.2.0, a num-ber of macros are de-fined in the file [83] [84] Chapter 3 [85] [86] [87] [88] [89] [90] Overfull \hbox (20.69044pt too wide) in paragraph at lines 6939--6939 [] @texttt as.integer(runif(N, 1, 12)), as.integer(runif(N, 1, 28)))[] [91] [92] [93] Chapter 4 [94] [95] [96] Overfull \hbox (14.94176pt too wide) in paragraph at lines 7312--7312 []@texttt evaluation nested too deeply: infinite recursion / options(expressio ns=)?[] [97] Overfull \hbox (25.25755pt too wide) in paragraph at lines 7352--7352 []@smalltt Message: Error: no valid set of coefficients has been found: pleas e supply starting values[] [98] Overfull \hbox (20.53261pt too wide) in paragraph at lines 7456--7456 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star t, etastart = etastart,[] Overfull \hbox (38.96663pt too wide) in paragraph at lines 7486--7495 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. @texttt debug(stats:::predict.Arima)[]@textrm . [99] [100] [101] [102] [103] [104] Overfull \hbox (78.17732pt too wide) in paragraph at lines 7878--7878 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_ odr_violation=0'[] Overfull \hbox (29.50735pt too wide) in paragraph at lines 7909--7911 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by @t exttt -fsanitize=undefined,address[] [105] [106] Overfull \hbox (72.42863pt too wide) in paragraph at lines 8042--8042 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 8091--8091 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl assi,[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 8094--8094 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t( cu)),[] [107] [108] Overfull \hbox (26.43913pt too wide) in paragraph at lines 8173--8173 []@texttt #5 0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9 698f98,[] [109] [110] Chapter 5 [111] [112] [113] [114] [115] [116] [117] [118] [119] [120] [121] [122] [123] Overfull \hbox (37.93651pt too wide) in paragraph at lines 9352--9352 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10123--10123 [] @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL SE");[] [134] Underfull \hbox (badness 10000) in paragraph at lines 10184--10186 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [135] [136] [137] [138] [139] [140] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10693--10693 [] @texttt // a version with (too) much PROTECT()ion .. "better safe than s orry"[] [141] [142] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10816--10816 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] [143] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10821--10821 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10876--10876 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10888--10888 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] [144] [145] [146] Overfull \hbox (14.94176pt too wide) in paragraph at lines 11113--11113 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one xit);[] [147] Overfull \hbox (43.6852pt too wide) in paragraph at lines 11195--11195 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [148] [149] Overfull \hbox (14.94176pt too wide) in paragraph at lines 11281--11281 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_SYMBOL, CE_ANY} cety pe_t;[] Chapter 6 [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] Chapter 7 [170] [171] Chapter 8 [172] [173] [174] Overfull \hbox (43.6852pt too wide) in paragraph at lines 13305--13305 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [175] Overfull \hbox (20.69044pt too wide) in paragraph at lines 13337--13337 []@texttt extern int (*ptr_R_ReadConsole)(const char *, unsigned char *, int, int);[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 13353--13353 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [176] [177] [178] Underfull \hbox (badness 10000) in paragraph at lines 13596--13603 @texttt modules/internet/nanoftp.c[]@textrm , @texttt src/modules/internet/nan ohttp.c[] @textrm and @texttt src/ [179] [180] [181] [182] [183] [184] Underfull \hbox (badness 10000) in paragraph at lines 13985--13989 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R -core\R32[] @textrm or kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+3/600 --dpi 603 ecrm1095 mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; 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Output written on ecrm1095.603gf (256 characters, 55528 bytes). Transcript written on ecrm1095.log. mktexpk: /home/buildd/.texmf-var/fonts/pk/ljfour/jknappen/ec/ecrm1095.603pk: successfully generated. (Function and variable index) [185] (Concept index) [186] [187] ) (see the transcript file for additional information) Output written on R-exts.pdf (190 pages, 839627 bytes). Transcript written on R-exts.log. This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/«PKGBUILDDIR»/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2015-06-24.23]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-exts.aux ) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-exts.toc [-1] [-2] [-3] [-4]) [-5] (./R-exts.toc) (./R-exts.toc) (Acknowledgements) Chapter 1 [1] [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 494--497 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] Underfull \hbox (badness 10000) in paragraph at lines 1820--1823 []@textrm [@texttt libRlapack[] @textrm in-cludes all the double-precision LA- PACK rou-tines Overfull \hbox (14.94176pt too wide) in paragraph at lines 1864--1864 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF LAGS)[] [24] [25] [26] [27] Overfull \hbox (67.78206pt too wide) in paragraph at lines 2162--2162 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (53.60722pt too wide) in paragraph at lines 2164--2164 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [28] [29] Overfull \hbox (16.92342pt too wide) in paragraph at lines 2303--2303 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar e defined.[] [30] [31] [32] Overfull \hbox (2.98494pt too wide) in paragraph at lines 2526--2528 [][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v er-sions such as @smalltt ~/.R/check.Renviron.i386[] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] Overfull \hbox (14.94176pt too wide) in paragraph at lines 4434--4434 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@ euro"[] [58] [59] [60] [61] Overfull \hbox (13.62822pt too wide) in paragraph at lines 4764--4764 []@texttt #define dngettext(pkg, String, StringP, N) (N > 1 ? StringP : String )[] [62] [63] Chapter 2 [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] Underfull \hbox (badness 10000) in paragraph at lines 6018--6025 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [79] [80] [81] [82] Underfull \hbox (badness 10000) in paragraph at lines 6337--6341 []@textrm As of R ver-sion 3.2.0, a num-ber of macros are de-fined in the file [83] [84] Chapter 3 [85] [86] [87] [88] [89] [90] Overfull \hbox (20.69044pt too wide) in paragraph at lines 6939--6939 [] @texttt as.integer(runif(N, 1, 12)), as.integer(runif(N, 1, 28)))[] [91] [92] [93] Chapter 4 [94] [95] [96] Overfull \hbox (14.94176pt too wide) in paragraph at lines 7312--7312 []@texttt evaluation nested too deeply: infinite recursion / options(expressio ns=)?[] [97] Overfull \hbox (25.25755pt too wide) in paragraph at lines 7352--7352 []@smalltt Message: Error: no valid set of coefficients has been found: pleas e supply starting values[] [98] Overfull \hbox (20.53261pt too wide) in paragraph at lines 7456--7456 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star t, etastart = etastart,[] Overfull \hbox (38.96663pt too wide) in paragraph at lines 7486--7495 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. @texttt debug(stats:::predict.Arima)[]@textrm . [99] [100] [101] [102] [103] [104] Overfull \hbox (78.17732pt too wide) in paragraph at lines 7878--7878 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_ odr_violation=0'[] Overfull \hbox (29.50735pt too wide) in paragraph at lines 7909--7911 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by @t exttt -fsanitize=undefined,address[] [105] [106] Overfull \hbox (72.42863pt too wide) in paragraph at lines 8042--8042 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 8091--8091 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl assi,[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 8094--8094 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t( cu)),[] [107] [108] Overfull \hbox (26.43913pt too wide) in paragraph at lines 8173--8173 []@texttt #5 0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9 698f98,[] [109] [110] Chapter 5 [111] [112] [113] [114] [115] [116] [117] [118] [119] [120] [121] [122] [123] Overfull \hbox (37.93651pt too wide) in paragraph at lines 9352--9352 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10123--10123 [] @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL SE");[] [134] Underfull \hbox (badness 10000) in paragraph at lines 10184--10186 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [135] [136] [137] [138] [139] [140] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10693--10693 [] @texttt // a version with (too) much PROTECT()ion .. "better safe than s orry"[] [141] [142] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10816--10816 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] [143] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10821--10821 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10876--10876 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10888--10888 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] [144] [145] [146] Overfull \hbox (14.94176pt too wide) in paragraph at lines 11113--11113 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one xit);[] [147] Overfull \hbox (43.6852pt too wide) in paragraph at lines 11195--11195 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [148] [149] Overfull \hbox (14.94176pt too wide) in paragraph at lines 11281--11281 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_SYMBOL, CE_ANY} cety pe_t;[] Chapter 6 [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] Chapter 7 [170] [171] Chapter 8 [172] [173] [174] Overfull \hbox (43.6852pt too wide) in paragraph at lines 13305--13305 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [175] Overfull \hbox (20.69044pt too wide) in paragraph at lines 13337--13337 []@texttt extern int (*ptr_R_ReadConsole)(const char *, unsigned char *, int, int);[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 13353--13353 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [176] [177] [178] Underfull \hbox (badness 10000) in paragraph at lines 13596--13603 @texttt modules/internet/nanoftp.c[]@textrm , @texttt src/modules/internet/nan ohttp.c[] @textrm and @texttt src/ [179] [180] [181] [182] [183] [184] Underfull \hbox (badness 10000) in paragraph at lines 13985--13989 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R -core\R32[] @textrm or (Function and variable index) [185] (./R-exts.vrs [186] [187] [188]) (Concept index) [189] (./R-exts.cps [190]) [191] ) (see the transcript file for additional information) Output written on R-exts.pdf (198 pages, 901156 bytes). Transcript written on R-exts.log. This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/«PKGBUILDDIR»/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2015-06-24.23]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-exts.aux ) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-exts.toc [-1] [-2] [-3] [-4]) [-5] (./R-exts.toc) (./R-exts.toc) (Acknowledgements) Chapter 1 [1] [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 494--497 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] Underfull \hbox (badness 10000) in paragraph at lines 1820--1823 []@textrm [@texttt libRlapack[] @textrm in-cludes all the double-precision LA- PACK rou-tines Overfull \hbox (14.94176pt too wide) in paragraph at lines 1864--1864 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF LAGS)[] [24] [25] [26] [27] Overfull \hbox (67.78206pt too wide) in paragraph at lines 2162--2162 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (53.60722pt too wide) in paragraph at lines 2164--2164 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [28] [29] Overfull \hbox (16.92342pt too wide) in paragraph at lines 2303--2303 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar e defined.[] [30] [31] [32] Overfull \hbox (2.98494pt too wide) in paragraph at lines 2526--2528 [][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v er-sions such as @smalltt ~/.R/check.Renviron.i386[] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] Overfull \hbox (14.94176pt too wide) in paragraph at lines 4434--4434 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@ euro"[] [58] [59] [60] [61] Overfull \hbox (13.62822pt too wide) in paragraph at lines 4764--4764 []@texttt #define dngettext(pkg, String, StringP, N) (N > 1 ? StringP : String )[] [62] [63] Chapter 2 [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] Underfull \hbox (badness 10000) in paragraph at lines 6018--6025 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [79] [80] [81] [82] Underfull \hbox (badness 10000) in paragraph at lines 6337--6341 []@textrm As of R ver-sion 3.2.0, a num-ber of macros are de-fined in the file [83] [84] Chapter 3 [85] [86] [87] [88] [89] [90] Overfull \hbox (20.69044pt too wide) in paragraph at lines 6939--6939 [] @texttt as.integer(runif(N, 1, 12)), as.integer(runif(N, 1, 28)))[] [91] [92] [93] Chapter 4 [94] [95] [96] Overfull \hbox (14.94176pt too wide) in paragraph at lines 7312--7312 []@texttt evaluation nested too deeply: infinite recursion / options(expressio ns=)?[] [97] Overfull \hbox (25.25755pt too wide) in paragraph at lines 7352--7352 []@smalltt Message: Error: no valid set of coefficients has been found: pleas e supply starting values[] [98] Overfull \hbox (20.53261pt too wide) in paragraph at lines 7456--7456 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star t, etastart = etastart,[] Overfull \hbox (38.96663pt too wide) in paragraph at lines 7486--7495 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. @texttt debug(stats:::predict.Arima)[]@textrm . [99] [100] [101] [102] [103] [104] Overfull \hbox (78.17732pt too wide) in paragraph at lines 7878--7878 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_ odr_violation=0'[] Overfull \hbox (29.50735pt too wide) in paragraph at lines 7909--7911 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by @t exttt -fsanitize=undefined,address[] [105] [106] Overfull \hbox (72.42863pt too wide) in paragraph at lines 8042--8042 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 8091--8091 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl assi,[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 8094--8094 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t( cu)),[] [107] [108] Overfull \hbox (26.43913pt too wide) in paragraph at lines 8173--8173 []@texttt #5 0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9 698f98,[] [109] [110] Chapter 5 [111] [112] [113] [114] [115] [116] [117] [118] [119] [120] [121] [122] [123] Overfull \hbox (37.93651pt too wide) in paragraph at lines 9352--9352 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10123--10123 [] @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL SE");[] [134] Underfull \hbox (badness 10000) in paragraph at lines 10184--10186 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [135] [136] [137] [138] [139] [140] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10693--10693 [] @texttt // a version with (too) much PROTECT()ion .. "better safe than s orry"[] [141] [142] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10816--10816 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] [143] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10821--10821 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10876--10876 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10888--10888 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] [144] [145] [146] Overfull \hbox (14.94176pt too wide) in paragraph at lines 11113--11113 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one xit);[] [147] Overfull \hbox (43.6852pt too wide) in paragraph at lines 11195--11195 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [148] [149] Overfull \hbox (14.94176pt too wide) in paragraph at lines 11281--11281 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_SYMBOL, CE_ANY} cety pe_t;[] Chapter 6 [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] Chapter 7 [170] [171] Chapter 8 [172] [173] [174] Overfull \hbox (43.6852pt too wide) in paragraph at lines 13305--13305 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [175] Overfull \hbox (20.69044pt too wide) in paragraph at lines 13337--13337 []@texttt extern int (*ptr_R_ReadConsole)(const char *, unsigned char *, int, int);[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 13353--13353 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [176] [177] [178] Underfull \hbox (badness 10000) in paragraph at lines 13596--13603 @texttt modules/internet/nanoftp.c[]@textrm , @texttt src/modules/internet/nan ohttp.c[] @textrm and @texttt src/ [179] [180] [181] [182] [183] [184] Underfull \hbox (badness 10000) in paragraph at lines 13985--13989 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R -core\R32[] @textrm or (Function and variable index) [185] (./R-exts.vrs [186] [187] [188]) (Concept index) [189] (./R-exts.cps [190]) [191] ) (see the transcript file for additional information) Output written on R-exts.pdf (198 pages, 901157 bytes). Transcript written on R-exts.log. This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/«PKGBUILDDIR»/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2015-06-24.23]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-exts.aux ) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-exts.toc [-1] [-2] [-3] [-4]) [-5] (./R-exts.toc) (./R-exts.toc) (Acknowledgements) Chapter 1 [1] [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 494--497 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] Underfull \hbox (badness 10000) in paragraph at lines 1820--1823 []@textrm [@texttt libRlapack[] @textrm in-cludes all the double-precision LA- PACK rou-tines Overfull \hbox (14.94176pt too wide) in paragraph at lines 1864--1864 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF LAGS)[] [24] [25] [26] [27] Overfull \hbox (67.78206pt too wide) in paragraph at lines 2162--2162 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (53.60722pt too wide) in paragraph at lines 2164--2164 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [28] [29] Overfull \hbox (16.92342pt too wide) in paragraph at lines 2303--2303 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar e defined.[] [30] [31] [32] Overfull \hbox (2.98494pt too wide) in paragraph at lines 2526--2528 [][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v er-sions such as @smalltt ~/.R/check.Renviron.i386[] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] Overfull \hbox (14.94176pt too wide) in paragraph at lines 4434--4434 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@ euro"[] [58] [59] [60] [61] Overfull \hbox (13.62822pt too wide) in paragraph at lines 4764--4764 []@texttt #define dngettext(pkg, String, StringP, N) (N > 1 ? StringP : String )[] [62] [63] Chapter 2 [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] Underfull \hbox (badness 10000) in paragraph at lines 6018--6025 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [79] [80] [81] [82] Underfull \hbox (badness 10000) in paragraph at lines 6337--6341 []@textrm As of R ver-sion 3.2.0, a num-ber of macros are de-fined in the file [83] [84] Chapter 3 [85] [86] [87] [88] [89] [90] Overfull \hbox (20.69044pt too wide) in paragraph at lines 6939--6939 [] @texttt as.integer(runif(N, 1, 12)), as.integer(runif(N, 1, 28)))[] [91] [92] [93] Chapter 4 [94] [95] [96] Overfull \hbox (14.94176pt too wide) in paragraph at lines 7312--7312 []@texttt evaluation nested too deeply: infinite recursion / options(expressio ns=)?[] [97] Overfull \hbox (25.25755pt too wide) in paragraph at lines 7352--7352 []@smalltt Message: Error: no valid set of coefficients has been found: pleas e supply starting values[] [98] Overfull \hbox (20.53261pt too wide) in paragraph at lines 7456--7456 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star t, etastart = etastart,[] Overfull \hbox (38.96663pt too wide) in paragraph at lines 7486--7495 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. @texttt debug(stats:::predict.Arima)[]@textrm . [99] [100] [101] [102] [103] [104] Overfull \hbox (78.17732pt too wide) in paragraph at lines 7878--7878 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_ odr_violation=0'[] Overfull \hbox (29.50735pt too wide) in paragraph at lines 7909--7911 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by @t exttt -fsanitize=undefined,address[] [105] [106] Overfull \hbox (72.42863pt too wide) in paragraph at lines 8042--8042 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 8091--8091 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl assi,[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 8094--8094 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t( cu)),[] [107] [108] Overfull \hbox (26.43913pt too wide) in paragraph at lines 8173--8173 []@texttt #5 0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9 698f98,[] [109] [110] Chapter 5 [111] [112] [113] [114] [115] [116] [117] [118] [119] [120] [121] [122] [123] Overfull \hbox (37.93651pt too wide) in paragraph at lines 9352--9352 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10123--10123 [] @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL SE");[] [134] Underfull \hbox (badness 10000) in paragraph at lines 10184--10186 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [135] [136] [137] [138] [139] [140] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10693--10693 [] @texttt // a version with (too) much PROTECT()ion .. "better safe than s orry"[] [141] [142] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10816--10816 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] [143] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10821--10821 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10876--10876 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10888--10888 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] [144] [145] [146] Overfull \hbox (14.94176pt too wide) in paragraph at lines 11113--11113 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one xit);[] [147] Overfull \hbox (43.6852pt too wide) in paragraph at lines 11195--11195 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [148] [149] Overfull \hbox (14.94176pt too wide) in paragraph at lines 11281--11281 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_SYMBOL, CE_ANY} cety pe_t;[] Chapter 6 [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] Chapter 7 [170] [171] Chapter 8 [172] [173] [174] Overfull \hbox (43.6852pt too wide) in paragraph at lines 13305--13305 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [175] Overfull \hbox (20.69044pt too wide) in paragraph at lines 13337--13337 []@texttt extern int (*ptr_R_ReadConsole)(const char *, unsigned char *, int, int);[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 13353--13353 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [176] [177] [178] Underfull \hbox (badness 10000) in paragraph at lines 13596--13603 @texttt modules/internet/nanoftp.c[]@textrm , @texttt src/modules/internet/nan ohttp.c[] @textrm and @texttt src/ [179] [180] [181] [182] [183] [184] Underfull \hbox (badness 10000) in paragraph at lines 13985--13989 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R -core\R32[] @textrm or (Function and variable index) [185] (./R-exts.vrs [186] [187] [188]) (Concept index) [189] (./R-exts.cps [190]) [191] ) (see the transcript file for additional information) Output written on R-exts.pdf (198 pages, 901157 bytes). Transcript written on R-exts.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-intro.texi This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/«PKGBUILDDIR»/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2015-06-24.23]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Preface) Cross reference values unknown; you must run TeX again. Chapter 1 [1] [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] [17] Chapter 5 [18] [19] [20] [21] [22] [23] [24] [25] [26] Chapter 6 [27] [28] [29] [30] Chapter 7 [31] [32] [33] Chapter 8 [34] [35] [36] <./images/hist.pdf> <./images/ecdf.pdf> [37] <./images/QQ.pdf> [38] <./images/ice.pdf> [39] [40] Chapter 9 [41] [42] Chapter 10 [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] Chapter 11 [53] [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] Chapter 12 [66] [67] [68] [69] [70] Overfull \hbox (26.43913pt too wide) in paragraph at lines 5743--5743 []@texttt > text(x, y, expression(paste(bgroup("(", atop(n, x), ")"), p^x, q^{ n-x})))[] [71] [72] [73] [74] [75] <./images/fig11.pdf> [76] <./images/fig12.pdf> [77] [78] [79] [80] Chapter 13 [81] Underfull \hbox (badness 10000) in paragraph at lines 6449--6454 []@textrm Users con-nected to the In-ter-net can use the @texttt install.packag es()[] @textrm and [82] Chapter 14 [83] [84] Underfull \hbox (badness 10000) in paragraph at lines 6650--6655 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and [85] Appendix A [86] [87] [88] [89] Appendix B [90] [91] [92] [93] [94] [95] [96] [97] Appendix C [98] [99] Appendix D [100] Appendix E [101] Appendix F [102] [103] ) (see the transcript file for additional information) Output written on R-intro.pdf (106 pages, 584554 bytes). Transcript written on R-intro.log. This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/«PKGBUILDDIR»/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2015-06-24.23]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-intro.aux) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-intro.toc [-1] [-2] [-3]) [-4] (./R-intro.toc) (./R-intro.toc) (Preface) Chapter 1 [1] [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] [17] Chapter 5 [18] [19] [20] [21] [22] [23] [24] [25] [26] Chapter 6 [27] [28] [29] [30] Chapter 7 [31] [32] [33] Chapter 8 [34] [35] [36] <./images/hist.pdf> <./images/ecdf.pdf> [37] <./images/QQ.pdf> [38] <./images/ice.pdf> [39] [40] Chapter 9 [41] [42] Chapter 10 [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] Chapter 11 [53] [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] Chapter 12 [66] [67] [68] [69] [70] Overfull \hbox (26.43913pt too wide) in paragraph at lines 5743--5743 []@texttt > text(x, y, expression(paste(bgroup("(", atop(n, x), ")"), p^x, q^{ n-x})))[] [71] [72] [73] [74] [75] <./images/fig11.pdf> [76] <./images/fig12.pdf> [77] [78] [79] [80] Chapter 13 [81] Underfull \hbox (badness 10000) in paragraph at lines 6449--6454 []@textrm Users con-nected to the In-ter-net can use the @texttt install.packag es()[] @textrm and [82] Chapter 14 [83] [84] Underfull \hbox (badness 10000) in paragraph at lines 6650--6655 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and [85] Appendix A [86] [87] [88] [89] Appendix B [90] [91] [92] [93] [94] [95] [96] [97] Appendix C [98] [99] Appendix D [100] (./R-intro.vrs [101] [102]) Appendix E [103] (./R-intro.cps [104]) Appendix F [105] [106] ) (see the transcript file for additional information) < /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pfb> Output written on R-intro.pdf (112 pages, 633833 bytes). Transcript written on R-intro.log. This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/«PKGBUILDDIR»/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2015-06-24.23]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-intro.aux) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-intro.toc [-1] [-2] [-3]) [-4] (./R-intro.toc) (./R-intro.toc) (Preface) Chapter 1 [1] [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] [17] Chapter 5 [18] [19] [20] [21] [22] [23] [24] [25] [26] Chapter 6 [27] [28] [29] [30] Chapter 7 [31] [32] [33] Chapter 8 [34] [35] [36] <./images/hist.pdf> <./images/ecdf.pdf> [37] <./images/QQ.pdf> [38] <./images/ice.pdf> [39] [40] Chapter 9 [41] [42] Chapter 10 [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] Chapter 11 [53] [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] Chapter 12 [66] [67] [68] [69] [70] Overfull \hbox (26.43913pt too wide) in paragraph at lines 5743--5743 []@texttt > text(x, y, expression(paste(bgroup("(", atop(n, x), ")"), p^x, q^{ n-x})))[] [71] [72] [73] [74] [75] <./images/fig11.pdf> [76] <./images/fig12.pdf> [77] [78] [79] [80] Chapter 13 [81] Underfull \hbox (badness 10000) in paragraph at lines 6449--6454 []@textrm Users con-nected to the In-ter-net can use the @texttt install.packag es()[] @textrm and [82] Chapter 14 [83] [84] Underfull \hbox (badness 10000) in paragraph at lines 6650--6655 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and [85] Appendix A [86] [87] [88] [89] Appendix B [90] [91] [92] [93] [94] [95] [96] [97] Appendix C [98] [99] Appendix D [100] (./R-intro.vrs [101] [102]) Appendix E [103] (./R-intro.cps [104]) Appendix F [105] [106] ) (see the transcript file for additional information) < /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi7.pfb> Output written on R-intro.pdf (112 pages, 633798 bytes). Transcript written on R-intro.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-ints.texi This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/«PKGBUILDDIR»/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2015-06-24.23]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] Chapter 2 [24] [25] Overfull \hbox (26.43913pt too wide) in paragraph at lines 1970--1970 [] @texttt if (!is.character(x)) x <- structure(as.character(x), names = na mes(x))[] [26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34] Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] Chapter 7 [48] Underfull \hbox (badness 10000) in paragraph at lines 3617--3626 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, Underfull \hbox (badness 10000) in paragraph at lines 3617--3626 @texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib/libR.dyl ib[]@textrm , [49] Chapter 8 [50] [51] [52] [53] [54] Underfull \hbox (badness 10000) in paragraph at lines 3989--3997 @texttt CRAN . R-project . org / package=codetools[]@textrm )[][] func-tions u sed for Underfull \hbox (badness 7869) in paragraph at lines 3989--3997 @textrm an-a-lyz-ing pack-age code. E.g., use @texttt _R_CHECK_CODETOOLS_PROFI LE_ Underfull \hbox (badness 10000) in paragraph at lines 3989--3997 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa tchArgs = FALSE[] @textrm and [55] [56] Chapter 9 [57] [58] Chapter 10 [59] Chapter 11 [60] Chapter 12 [61] [62] (Function and variable index) [63] [64] (Concept index) [65] [66] ) (see the transcript file for additional information) Output written on R-ints.pdf (69 pages, 383233 bytes). Transcript written on R-ints.log. This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/«PKGBUILDDIR»/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2015-06-24.23]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-ints.aux ) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-ints.toc [-1] [-2]) [-3] (./R-ints.toc) (./R-ints.toc) Chapter 1 [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] Chapter 2 [24] [25] Overfull \hbox (26.43913pt too wide) in paragraph at lines 1970--1970 [] @texttt if (!is.character(x)) x <- structure(as.character(x), names = na mes(x))[] [26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34] Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] Chapter 7 [48] Underfull \hbox (badness 10000) in paragraph at lines 3617--3626 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, Underfull \hbox (badness 10000) in paragraph at lines 3617--3626 @texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib/libR.dyl ib[]@textrm , [49] Chapter 8 [50] [51] [52] [53] [54] Underfull \hbox (badness 10000) in paragraph at lines 3989--3997 @texttt CRAN . R-project . org / package=codetools[]@textrm )[][] func-tions u sed for Underfull \hbox (badness 7869) in paragraph at lines 3989--3997 @textrm an-a-lyz-ing pack-age code. E.g., use @texttt _R_CHECK_CODETOOLS_PROFI LE_ Underfull \hbox (badness 10000) in paragraph at lines 3989--3997 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa tchArgs = FALSE[] @textrm and [55] [56] Chapter 9 [57] [58] Chapter 10 [59] Chapter 11 [60] Chapter 12 [61] [62] (Function and variable index) [63] [64] (./R-ints.vrs [65]) (Concept index) [66] (./R-ints.cps) [67] ) (see the transcript file for additional information) Output written on R-ints.pdf (72 pages, 431130 bytes). Transcript written on R-ints.log. This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/«PKGBUILDDIR»/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2015-06-24.23]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-ints.aux ) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-ints.toc [-1] [-2]) [-3] (./R-ints.toc) (./R-ints.toc) Chapter 1 [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] Chapter 2 [24] [25] Overfull \hbox (26.43913pt too wide) in paragraph at lines 1970--1970 [] @texttt if (!is.character(x)) x <- structure(as.character(x), names = na mes(x))[] [26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34] Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] Chapter 7 [48] Underfull \hbox (badness 10000) in paragraph at lines 3617--3626 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, Underfull \hbox (badness 10000) in paragraph at lines 3617--3626 @texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib/libR.dyl ib[]@textrm , [49] Chapter 8 [50] [51] [52] [53] [54] Underfull \hbox (badness 10000) in paragraph at lines 3989--3997 @texttt CRAN . R-project . org / package=codetools[]@textrm )[][] func-tions u sed for Underfull \hbox (badness 7869) in paragraph at lines 3989--3997 @textrm an-a-lyz-ing pack-age code. E.g., use @texttt _R_CHECK_CODETOOLS_PROFI LE_ Underfull \hbox (badness 10000) in paragraph at lines 3989--3997 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa tchArgs = FALSE[] @textrm and [55] [56] Chapter 9 [57] [58] Chapter 10 [59] Chapter 11 [60] Chapter 12 [61] [62] (Function and variable index) [63] [64] (./R-ints.vrs [65]) (Concept index) [66] (./R-ints.cps) [67] ) (see the transcript file for additional information) Output written on R-ints.pdf (72 pages, 431130 bytes). Transcript written on R-ints.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-lang.texi This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/«PKGBUILDDIR»/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2015-06-24.23]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Chapter 2 [1] [2] Cross reference values unknown; you must run TeX again. Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294 @textbf storage.mode| [3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] [28] Chapter 5 [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] Chapter 7 [44] [45] Chapter 8 [46] [47] Chapter 9 [48] [49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58] (Function and Variable Index) [59] (Concept Index) [60] Appendix A [61] [62] ) (see the transcript file for additional information) Output written on R-lang.pdf (65 pages, 331051 bytes). Transcript written on R-lang.log. This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/«PKGBUILDDIR»/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2015-06-24.23]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-lang.aux ) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-lang.toc [-1] [-2]) [-3] (./R-lang.toc) (./R-lang.toc) Chapter 1 Chapter 2 [1] [2] Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294 @textbf storage.mode| [3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] [28] Chapter 5 [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] Chapter 7 [44] [45] Chapter 8 [46] [47] Chapter 9 [48] [49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58] (Function and Variable Index) [59] (./R-lang.vrs [60]) (Concept Index) [61] (./R-lang.cps) Appendix A [62] [63] ) (see the transcript file for additional information) Output written on R-lang.pdf (68 pages, 379645 bytes). Transcript written on R-lang.log. This is pdfTeX, Version 3.14159265-2.6-1.40.16 (TeX Live 2015/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/«PKGBUILDDIR»/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2015-06-24.23]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (./epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./R-lang.aux ) (./R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (./version.texi) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] (./R-lang.toc [-1] [-2]) [-3] (./R-lang.toc) (./R-lang.toc) Chapter 1 Chapter 2 [1] [2] Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294 @textbf storage.mode| [3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] [28] Chapter 5 [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] Chapter 7 [44] [45] Chapter 8 [46] [47] Chapter 9 [48] [49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58] (Function and Variable Index) [59] (./R-lang.vrs [60]) (Concept Index) [61] (./R-lang.cps) Appendix A [62] [63] ) (see the transcript file for additional information) Output written on R-lang.pdf (68 pages, 379648 bytes). Transcript written on R-lang.log. installing R manuals in PDF format ... make[2]: Leaving directory '/«PKGBUILDDIR»/doc/manual' make[1]: Leaving directory '/«PKGBUILDDIR»' make prefix=/«PKGBUILDDIR»/debian/r-base-core/usr \ infodir=/«PKGBUILDDIR»/debian/r-base-core/usr/share/info install-info make[1]: Entering directory '/«PKGBUILDDIR»' make[2]: Entering directory '/«PKGBUILDDIR»/doc/manual' /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-FAQ.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-admin.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-data.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-exts.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-intro.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-ints.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-lang.texi mkdir -p -- /«PKGBUILDDIR»/debian/r-base-core/usr/share/info /usr/bin/install -c -m 644 "./dir" "/«PKGBUILDDIR»/debian/r-base-core/usr/share/info" installing R info pages ... updating '/«PKGBUILDDIR»/debian/r-base-core/usr/share/info/dir' ... you need to adjust /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/dir manually you need to adjust /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/dir manually you need to adjust /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/dir manually you need to adjust /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/dir manually you need to adjust /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/dir manually you need to adjust /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/dir manually you need to adjust /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/dir manually make[2]: Leaving directory '/«PKGBUILDDIR»/doc/manual' make[1]: Leaving directory '/«PKGBUILDDIR»' dh_movefiles --sourcedir=debian/r-base-core -pr-doc-pdf dh_movefiles --sourcedir=debian/r-base-core -pr-doc-html touch install-indep-stamp gunzip -9v /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/*.gz /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-FAQ.info.gz: 67.0% -- replaced with /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-FAQ.info /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-admin.info.gz: 68.3% -- replaced with /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-admin.info /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-data.info.gz: 70.6% -- replaced with /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-data.info /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-exts.info-1.gz: 66.9% -- replaced with /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-exts.info-1 /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-exts.info-2.gz: 70.8% -- replaced with /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-exts.info-2 /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-exts.info.gz: 68.2% -- replaced with /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-exts.info /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-intro.info.gz: 70.0% -- replaced with /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-intro.info /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-ints.info.gz: 67.8% -- replaced with /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-ints.info /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-lang.info.gz: 71.7% -- replaced with /«PKGBUILDDIR»/debian/r-base-core/usr/share/info/R-lang.info dh_movefiles --sourcedir=debian/r-base-core -pr-doc-info rm -vf /«PKGBUILDDIR»/debian/r-doc-info/usr/share/info/dir \ /«PKGBUILDDIR»/debian/r-doc-info/usr/share/info/dir.old removed '/«PKGBUILDDIR»/debian/r-doc-info/usr/share/info/dir' dh_installdirs -pr-mathlib usr/include usr/lib \ usr/share/lintian/overrides \ usr/lib/pkgconfig dh_movefiles --sourcedir=debian/r-base-core -pr-mathlib (cd /«PKGBUILDDIR»/debian/r-mathlib/usr/lib; \ ls -l ; \ mv -v libRmath.so libRmath.so.1.0.0; \ ln -sv libRmath.so.1.0.0 libRmath.so.1; \ ln -sv libRmath.so.1 libRmath.so) total 1912 -rw-rw-r-- 1 root root 1212890 Jan 13 07:25 libRmath.a -rwxrwxr-x 1 root root 733644 Jan 13 07:25 libRmath.so drwxr-xr-x 2 root root 4096 Jan 13 07:34 pkgconfig 'libRmath.so' -> 'libRmath.so.1.0.0' 'libRmath.so.1' -> 'libRmath.so.1.0.0' 'libRmath.so' -> 'libRmath.so.1' install -m 0644 src/include/Rmath.h \ /«PKGBUILDDIR»/debian/r-mathlib/usr/include install -m 0644 debian/Rprofile.site /«PKGBUILDDIR»/debian/r-base-core/etc/R install -m 0644 debian/Renviron.site /«PKGBUILDDIR»/debian/r-base-core/etc/R (cd /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/etc; \ cat /«PKGBUILDDIR»/debian/Renviron-R_LIBS.patch | patch --verbose; \ mv Makeconf repositories ldpaths ../../../../etc/R/; \ mv Renviron Renviron.ucf; \ ln -s /etc/R/Makeconf .; \ ln -s /etc/R/Renviron .; \ ln -s /etc/R/Renviron.site .; \ ln -s /etc/R/Rprofile.site .; \ ln -s /etc/R/ldpaths .; \ ln -s /etc/R/repositories . ) Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |--- Renviron.orig 2003-04-04 06:52:22.000000000 -0500 |+++ Renviron 2003-04-04 06:49:05.000000000 -0500 -------------------------- patching file Renviron Using Plan A... Hunk #1 succeeded at 43 with fuzz 2 (offset 10 lines). done #dh_bash-completion # edd 12 Jan 2016 new location install -m 0644 debian/R.bash-completion \ debian/r-base-core/usr/share/bash-completion/completions/R (cd /«PKGBUILDDIR»/debian/r-base-core/usr/lib/; \ ln -sv R/lib/libR.so . ) './libR.so' -> 'R/lib/libR.so' (cd debian/icon-class-patch && munpack rlogo_icon.png.mpack) rlogo_icon.png (application/octet-stream) install -m 0644 debian/icon-class-patch/rlogo_icon.png \ debian/r-base-core/usr/share/icons/hicolor/48x48/apps install -m 0644 debian/icon-class-patch/R.desktop \ debian/r-base-core/usr/share/applications rm debian/icon-class-patch/rlogo_icon.png touch install-arch-stamp *** binary-arch *** dh_testdir -a dh_testroot -a dh_installdocs -pr-base-core doc/NEWS.* README \ debian/README.Atlas \ debian/README.mathlib dh_installdocs -pr-mathlib doc/NEWS.* README \ debian/README.mathlib dh_installdocs -pr-base-core-dbg dh_installexamples -pr-mathlib src/nmath/standalone/test.c #dh_installmenu -a # (cd /«PKGBUILDDIR»/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../../lib/R/doc .) (cd /«PKGBUILDDIR»/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../R/doc .) (cd /«PKGBUILDDIR»/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../../lib/R/library .) install -p -m 0644 debian/r-base-core.lintian \ /«PKGBUILDDIR»/debian/r-base-core/usr/share/lintian/overrides/r-base-core install -p -m 0644 debian/r-recommended.lintian \ /«PKGBUILDDIR»/debian/r-recommended/usr/share/lintian/overrides/r-recommended install -p -m 0644 debian/r-mathlib.lintian \ /«PKGBUILDDIR»/debian/r-mathlib/usr/share/lintian/overrides/r-mathlib dh_installchangelogs -a -k doc/NEWS dh_strip --sourcedir=/«PKGBUILDDIR»/debian/r-base-core --dbg-package=r-base-core-dbg dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform armhf: r-base-core r-mathlib r-base-core-dbg dh_strip debug symbol extraction: not adding gnu debuglinks since --dbg-package is given dh_strip debug symbol extraction: packages to act on: r-base-core r-mathlib r-base-core-dbg dh_strip debug symbol extraction: ignored packages: we have -dbg package(s), not installing anything into ddeb find: `/«PKGBUILDDIR»/debian/r-base-core-dbgsym': No such file or directory dpkg-gencontrol: warning: -is is deprecated; it is without effect dpkg-gencontrol: warning: -ip is deprecated; it is without effect dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol we have -dbg package(s), not installing anything into ddeb find: `/«PKGBUILDDIR»/debian/r-mathlib-dbgsym': No such file or directory dpkg-gencontrol: warning: -is is deprecated; it is without effect dpkg-gencontrol: warning: -ip is deprecated; it is without effect dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol Unknown option: sourcedir dh_strip --sourcedir=/«PKGBUILDDIR»/debian/r-mathlib dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform armhf: r-base-core r-mathlib r-base-core-dbg dh_strip debug symbol extraction: packages to act on: r-base-core r-mathlib r-base-core-dbg dh_strip debug symbol extraction: ignored packages: pkg_create_dbgsym: /«PKGBUILDDIR»/debian/r-base-core-dbgsym already exists, ignoring pkg_create_dbgsym: /«PKGBUILDDIR»/debian/r-mathlib-dbgsym already exists, ignoring Unknown option: sourcedir dh_compress -a dh_fixperms -a dh_link -a dh_makeshlibs -a dh_installdeb -a dh_perl -a dh_shlibdeps -a -l /«PKGBUILDDIR»/debian/r-base-core/usr/lib/R/lib dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libtk8.6.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libtcl8.6.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package r-base-core: unknown substitution variable ${perl:Depends} dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform armhf: r-base-core r-mathlib r-base-core-dbg dh_gencontrol debug symbol wrapper: packages to act on: r-base-core r-mathlib r-base-core-dbg dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: processing package r-base-core (pkgdir debian/r-base-core, ddeb package dir debian/r-base-core-dbgsym) dh_gencontrol debug symbol wrapper: building r-base-core-dbgsym_3.2.3-3_armhf.ddeb dpkg-deb: building package 'r-base-core-dbgsym' in '../r-base-core-dbgsym_3.2.3-3_armhf.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile r-base-core-dbgsym_3.2.3-3_armhf.ddeb gnu-r extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: processing package r-mathlib (pkgdir debian/r-mathlib, ddeb package dir debian/r-mathlib-dbgsym) dh_gencontrol debug symbol wrapper: building r-mathlib-dbgsym_3.2.3-3_armhf.ddeb dpkg-deb: building package 'r-mathlib-dbgsym' in '../r-mathlib-dbgsym_3.2.3-3_armhf.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile r-mathlib-dbgsym_3.2.3-3_armhf.ddeb gnu-r extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 128 INFO: pkgstriptranslations version 128 INFO: pkgstriptranslations version 128 pkgstriptranslations: processing r-mathlib (in debian/r-mathlib); do_strip: , oemstrip: pkgstriptranslations: processing r-base-core (in debian/r-base-core); do_strip: , oemstrip: pkgstriptranslations: processing r-base-core-dbg (in debian/r-base-core-dbg); do_strip: , oemstrip: debian/r-base-core/usr/share/applications/R.desktop: does not have gettext domain, not stripping pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-base-core/DEBIAN/control, package r-base-core, directory debian/r-base-core .. removing usr/share/doc/r-base-core/changelog.gz pkgstripfiles: Truncating usr/share/doc/r-base-core/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-base-core ... opkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-base-core-dbg/DEBIAN/control, package r-base-core-dbg, directory debian/r-base-core-dbg .. removing usr/share/doc/r-base-core-dbg/changelog.gz INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... ooINFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... WARNING: optipng failed on usr/lib/R/library/graphics/help/figures/oma.png, ignoring Invalid PNG signature on usr/lib/R/library/graphics/help/figures/oma.png [at void throw_png_error():pngex.h:37] WARNING: advpng failed on usr/lib/R/library/graphics/help/figures/oma.png, ignoring WARNING: optipng failed on usr/lib/R/library/graphics/help/figures/mai.png, ignoring Invalid PNG signature on usr/lib/R/library/graphics/help/figures/mai.png [at void throw_png_error():pngex.h:37] WARNING: advpng failed on usr/lib/R/library/graphics/help/figures/mai.png, ignoring WARNING: optipng failed on usr/lib/R/library/graphics/help/figures/pch.png, ignoring Invalid PNG signature on usr/lib/R/library/graphics/help/figures/pch.png [at void throw_png_error():pngex.h:37] WARNING: advpng failed on usr/lib/R/library/graphics/help/figures/pch.png, ignoring o...INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... opkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... pkgstripfiles: processing control file: debian/r-mathlib/DEBIAN/control, package r-mathlib, directory debian/r-mathlib .. removing usr/share/doc/r-mathlib/changelog.gz pkgstripfiles: Truncating usr/share/doc/r-mathlib/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-mathlib ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-mathlib' in '../r-mathlib_3.2.3-3_armhf.deb'. Searching for duplicated docs in dependency r-base-core... symlinking changelog.Debian.gz in r-base-core-dbg to file in r-base-core pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-base-core-dbg ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-base-core-dbg' in '../r-base-core-dbg_3.2.3-3_armhf.deb'. oo pkgstripfiles: PNG optimization (7/0) for package r-base-core took 20 s dpkg-deb: building package 'r-base-core' in '../r-base-core_3.2.3-3_armhf.deb'. dpkg-genchanges -B -mLaunchpad Build Daemon >../r-base_3.2.3-3_armhf.changes dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build r-base-3.2.3 dpkg-buildpackage: binary-only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20160113-0735 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build Chroot │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ r-base_3.2.3-3_armhf.changes: ───────────────────────────── Format: 1.8 Date: Tue, 12 Jan 2016 12:51:40 -0600 Source: r-base Binary: r-base r-base-core r-base-dev r-mathlib r-base-html r-doc-pdf r-doc-html r-doc-info r-recommended r-base-core-dbg Architecture: armhf Version: 3.2.3-3 Distribution: xenial-proposed Urgency: low Maintainer: Launchpad Build Daemon Changed-By: Dirk Eddelbuettel Description: r-base - GNU R statistical computation and graphics system r-base-core - GNU R core of statistical computation and graphics system r-base-core-dbg - GNU R debug symbols for statistical comp. language and environmen r-base-dev - GNU R installation of auxiliary GNU R packages r-base-html - GNU R html docs for statistical computing system functions r-doc-html - GNU R html manuals for statistical computing system r-doc-info - GNU R info manuals statistical computing system r-doc-pdf - GNU R pdf manuals for statistical computing system r-mathlib - GNU R standalone mathematics library r-recommended - GNU R collection of recommended packages [metapackage] Changes: r-base (3.2.3-3) unstable; urgency=low . * debian/control: Also add 'gcc-4.9 [mips]' to Depends: for r-base-core to ensure compiler is present on installed system (thanks, Sébastien) . * debian/rules: Set 'R_GZIPCMD=gzip -n' to avoid a Lintian warning about gzip files with timestamps . * debian/rules: No longer install menu file (and we have a desktop file) Checksums-Sha1: dd901d0caf74d4e75f1d39a42fc00aebc5449a3c 2874834 r-base-core-dbg_3.2.3-3_armhf.deb c7a6b7dd7b88b6281cb92d501a3da06a82ee701f 1508 r-base-core-dbgsym_3.2.3-3_armhf.ddeb 583fe5a0eee6f93fa2c03f440808aee0645ef385 20130074 r-base-core_3.2.3-3_armhf.deb 3d522eb0f97b80a0cf992880ff65be77e4a634c7 1474 r-mathlib-dbgsym_3.2.3-3_armhf.ddeb bcbe212889d8ef88bda19f5820bba904d14c004e 1289618 r-mathlib_3.2.3-3_armhf.deb Checksums-Sha256: 6f54d1fb053372256ca221247980e080fce96c7d0a2798ea51f529c1717bdd8b 2874834 r-base-core-dbg_3.2.3-3_armhf.deb d20855020dda1369e700c1b0821a6ff9d88c4d9dfbd7023199acdfac2f01eb9e 1508 r-base-core-dbgsym_3.2.3-3_armhf.ddeb edf9f0f1dcfd275e869146707969d1faba4da57152da25ecc9382344a07610b6 20130074 r-base-core_3.2.3-3_armhf.deb 3d9bdb76028d89317434ede6a0c52a68d44d6d3ab86bbf566b915abbd9363c66 1474 r-mathlib-dbgsym_3.2.3-3_armhf.ddeb 3eda1bf23383b65fe1792448069111f38cd0b07af816400282bf9b870682ad9f 1289618 r-mathlib_3.2.3-3_armhf.deb Files: 0bbaadd933400862bdd1f1dd1ad60b1e 2874834 debug extra r-base-core-dbg_3.2.3-3_armhf.deb 95cf8d6e532360a73cb7d48f287dd046 1508 gnu-r extra r-base-core-dbgsym_3.2.3-3_armhf.ddeb 70656210e40ac11efc08e60d68d08eed 20130074 gnu-r optional r-base-core_3.2.3-3_armhf.deb 15156c26357c0b80bd070306a374d127 1474 gnu-r extra r-mathlib-dbgsym_3.2.3-3_armhf.ddeb cf13cc9e18ac72be1905cf6536a7f856 1289618 gnu-r optional r-mathlib_3.2.3-3_armhf.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ r-base-core-dbg_3.2.3-3_armhf.deb ───────────────────────────────── new debian package, version 2.0. size 2874834 bytes: control archive= 1845 bytes. 1844 bytes, 39 lines control 1700 bytes, 21 lines md5sums Package: r-base-core-dbg Source: r-base Version: 3.2.3-3 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Dirk Eddelbuettel Installed-Size: 10037 Depends: r-base-core (= 3.2.3-3), r-base-dev (= 3.2.3-3) Section: debug Priority: extra Homepage: http://www.r-project.org/ Description: GNU R debug symbols for statistical comp. language and environment R is a system for statistical computation and graphics. It consists of a language plus a run-time environment with graphics, a debugger, access to certain system functions, and the ability to run programs stored in script files. . The design of R has been heavily influenced by two existing languages: Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the resulting language is very similar in appearance to S, the underlying implementation and semantics are derived from Scheme. . The core of R is an interpreted computer language which allows branching and looping as well as modular programming using functions. Most of the user-visible functions in R are written in R. It is possible for the user to interface to procedures written in the C, C++, or FORTRAN languages for efficiency, and many of R's core functions do so. The R distribution contains functionality for a large number of statistical procedures and underlying applied math computations. There is also a large set of functions which provide a flexible graphical environment for creating various kinds of data presentations. . Additionally, several thousand extension "packages" are available from CRAN, the Comprehensive R Archive Network, many also as Debian packages, named 'r-cran-'. . This package contains debugging symbol tables for the binaries and dynamic libraries in the r-base-core package. drwxr-xr-x root/root 0 2016-01-13 07:34 ./ drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/ drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/lib/ drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/lib/debug/ drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/lib/debug/usr/ drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/lib/debug/usr/bin/ -rw-r--r-- root/root 15920 2016-01-13 07:34 ./usr/lib/debug/usr/bin/Rscript drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/lib/debug/usr/lib/ drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/ drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/bin/ -rw-r--r-- root/root 15920 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/bin/Rscript drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/bin/exec/ -rw-r--r-- root/root 7688 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/bin/exec/R drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/lib/ -rw-r--r-- root/root 5518924 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/lib/libR.so drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/library/ drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/library/grDevices/ drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/library/grDevices/libs/ -rw-r--r-- root/root 86304 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/library/grDevices/libs/cairo.so -rw-r--r-- root/root 446816 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/library/grDevices/libs/grDevices.so drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/library/graphics/ drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/library/graphics/libs/ -rw-r--r-- root/root 582584 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/library/graphics/libs/graphics.so drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/library/grid/ drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/library/grid/libs/ -rw-r--r-- root/root 310708 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/library/grid/libs/grid.so drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/library/methods/ drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/library/methods/libs/ -rw-r--r-- root/root 70912 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/library/methods/libs/methods.so drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/library/parallel/ drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/library/parallel/libs/ -rw-r--r-- root/root 40252 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/library/parallel/libs/parallel.so drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/library/splines/ drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/library/splines/libs/ -rw-r--r-- root/root 15536 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/library/splines/libs/splines.so drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/library/stats/ drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/library/stats/libs/ -rw-r--r-- root/root 1402276 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/library/stats/libs/stats.so drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/library/tcltk/ drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/library/tcltk/libs/ -rw-r--r-- root/root 59512 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/library/tcltk/libs/tcltk.so drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/library/tools/ drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/library/tools/libs/ -rw-r--r-- root/root 190968 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/library/tools/libs/tools.so drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/library/utils/ drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/library/utils/libs/ -rw-r--r-- root/root 94480 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/library/utils/libs/utils.so drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/modules/ -rw-r--r-- root/root 248784 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/modules/R_X11.so -rw-r--r-- root/root 105032 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/modules/R_de.so -rw-r--r-- root/root 208320 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/modules/internet.so -rw-r--r-- root/root 83972 2016-01-13 07:34 ./usr/lib/debug/usr/lib/R/modules/lapack.so -rw-r--r-- root/root 610772 2016-01-13 07:34 ./usr/lib/debug/usr/lib/libRmath.so.1.0.0 drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/share/ drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/share/doc/r-base-core-dbg/ lrwxrwxrwx root/root 0 2016-01-13 07:34 ./usr/share/doc/r-base-core-dbg/NEWS.gz -> changelog.gz lrwxrwxrwx root/root 0 2016-01-13 07:34 ./usr/share/doc/r-base-core-dbg/changelog.Debian.gz -> ../r-base-core/changelog.Debian.gz -rw-r--r-- root/root 20761 2016-01-13 07:01 ./usr/share/doc/r-base-core-dbg/copyright drwxr-xr-x root/root 0 2016-01-13 07:25 ./usr/share/lintian/ drwxr-xr-x root/root 0 2016-01-13 07:25 ./usr/share/lintian/overrides/ r-base-core_3.2.3-3_armhf.deb ───────────────────────────── new debian package, version 2.0. size 20130074 bytes: control archive= 26601 bytes. 93 bytes, 5 lines conffiles 2756 bytes, 45 lines control 69422 bytes, 878 lines md5sums 2235 bytes, 65 lines * postinst #!/bin/sh 667 bytes, 34 lines * preinst #!/bin/sh 689 bytes, 26 lines * prerm #!/bin/sh 30 bytes, 1 lines shlibs Package: r-base-core Source: r-base Version: 3.2.3-3 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Dirk Eddelbuettel Installed-Size: 31248 Depends: zip, unzip, libpaper-utils, xdg-utils, libblas3 | libblas.so.3, libbz2-1.0, libc6 (>= 2.16), libcairo2 (>= 1.6.0), libcurl3 (>= 7.28.0), libglib2.0-0 (>= 2.12.0), libgomp1 (>= 4.9), libjpeg8 (>= 8c), liblapack3 | liblapack.so.3, liblzma5 (>= 5.1.1alpha+20120614), libpango-1.0-0 (>= 1.14.0), libpangocairo-1.0-0 (>= 1.14.0), libpcre3, libpng12-0 (>= 1.2.13-4), libreadline6 (>= 6.0), libtcl8.6 (>= 8.6.0), libtiff5 (>= 4.0.3), libtk8.6 (>= 8.6.0), libx11-6, libxt6, zlib1g (>= 1:1.1.4), ucf (>= 3.0), ca-certificates Recommends: r-recommended, r-base-dev, r-doc-html Suggests: ess, r-doc-info | r-doc-pdf, r-mathlib, r-base-html Conflicts: r-base-latex, r-cran-rcompgen, r-gnome Replaces: r-base (<= 1.4.1-1), r-base-latex (<= 2.9.2-4), r-cran-rcompgen (<= 0.1-17-1), r-gnome (<= 2.3.1), r-recommended (<< 1.9.0) Provides: r-api-3, r-base-latex, r-cran-rcompgen, r-gnome Section: gnu-r Priority: optional Homepage: http://www.r-project.org/ Description: GNU R core of statistical computation and graphics system R is a system for statistical computation and graphics. It consists of a language plus a run-time environment with graphics, a debugger, access to certain system functions, and the ability to run programs stored in script files. . The design of R has been heavily influenced by two existing languages: Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the resulting language is very similar in appearance to S, the underlying implementation and semantics are derived from Scheme. . The core of R is an interpreted computer language which allows branching and looping as well as modular programming using functions. Most of the user-visible functions in R are written in R. It is possible for the user to interface to procedures written in the C, C++, or FORTRAN languages for efficiency, and many of R's core functions do so. The R distribution contains functionality for a large number of statistical procedures and underlying applied math computations. There is also a large set of functions which provide a flexible graphical environment for creating various kinds of data presentations. . Additionally, several thousand extension "packages" are available from CRAN, the Comprehensive R Archive Network, many also as Debian packages, named 'r-cran-'. . 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r-mathlib Source: r-base Version: 3.2.3-3 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Dirk Eddelbuettel Installed-Size: 1678 Depends: libc6 (>= 2.4) Recommends: r-base-core (= 3.2.3-3), r-base-dev (= 3.2.3-3) Section: gnu-r Priority: optional Homepage: http://www.r-project.org/ Description: GNU R standalone mathematics library R is a system for statistical computation and graphics. It consists of a language plus a run-time environment with graphics, a debugger, access to certain system functions, and the ability to run programs stored in script files. . The design of R has been heavily influenced by two existing languages: Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the resulting language is very similar in appearance to S, the underlying implementation and semantics are derived from Scheme. . The core of R is an interpreted computer language which allows branching and looping as well as modular programming using functions. Most of the user-visible functions in R are written in R. It is possible for the user to interface to procedures written in the C, C++, or FORTRAN languages for efficiency, and many of R's core functions do so. The R distribution contains functionality for a large number of statistical procedures and underlying applied math computations. There is also a large set of functions which provide a flexible graphical environment for creating various kinds of data presentations. . Additionally, several thousand extension "packages" are available from CRAN, the Comprehensive R Archive Network, many also as Debian packages, named 'r-cran-'. . This package provides the libRmath shared and static libraries which can be called from standalone C or C++ code. drwxr-xr-x root/root 0 2016-01-13 07:34 ./ drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/ drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/include/ -rw-r--r-- root/root 17620 2016-01-13 07:34 ./usr/include/Rmath.h drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/lib/ -rw-r--r-- root/root 263586 2016-01-13 07:34 ./usr/lib/libRmath.a lrwxrwxrwx root/root 0 2016-01-13 07:34 ./usr/lib/libRmath.so -> libRmath.so.1 lrwxrwxrwx root/root 0 2016-01-13 07:34 ./usr/lib/libRmath.so.1 -> libRmath.so.1.0.0 -rw-r--r-- root/root 124448 2016-01-13 07:34 ./usr/lib/libRmath.so.1.0.0 drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/lib/pkgconfig/ -rw-r--r-- root/root 173 2016-01-13 07:25 ./usr/lib/pkgconfig/libRmath.pc drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/share/ drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/share/doc/r-mathlib/ -rw-r--r-- root/root 35933 2014-03-12 23:03 ./usr/share/doc/r-mathlib/NEWS.0.gz -rw-r--r-- root/root 108753 2014-03-12 23:03 ./usr/share/doc/r-mathlib/NEWS.1.gz -rw-r--r-- root/root 96602 2015-03-18 23:04 ./usr/share/doc/r-mathlib/NEWS.2.Rd.gz -rw-r--r-- root/root 229656 2014-03-12 23:03 ./usr/share/doc/r-mathlib/NEWS.2.gz -rw-r--r-- root/root 61973 2015-12-06 23:15 ./usr/share/doc/r-mathlib/NEWS.Rd.gz lrwxrwxrwx root/root 0 2016-01-13 07:34 ./usr/share/doc/r-mathlib/NEWS.gz -> changelog.gz -rw-r--r-- root/root 375494 2016-01-13 07:22 ./usr/share/doc/r-mathlib/NEWS.pdf.gz -rw-r--r-- root/root 259235 2016-01-13 07:22 ./usr/share/doc/r-mathlib/NEWS.rds.gz -rw-r--r-- root/root 2107 2014-07-07 22:15 ./usr/share/doc/r-mathlib/README.gz -rw-r--r-- root/root 3026 2016-01-13 07:01 ./usr/share/doc/r-mathlib/README.mathlib -rw-r--r-- root/root 1162 2016-01-13 07:34 ./usr/share/doc/r-mathlib/changelog.Debian.gz -rw-r--r-- root/root 20761 2016-01-13 07:01 ./usr/share/doc/r-mathlib/copyright drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/share/doc/r-mathlib/examples/ -rw-r--r-- root/root 1371 2015-08-25 22:18 ./usr/share/doc/r-mathlib/examples/test.c drwxr-xr-x root/root 0 2016-01-13 07:25 ./usr/share/lintian/ drwxr-xr-x root/root 0 2016-01-13 07:34 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 231 2016-01-13 07:01 ./usr/share/lintian/overrides/r-mathlib ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Not removing build depends: as requested Keeping session: ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: armhf Build-Space: 276936 Build-Time: 2070 Distribution: xenial-proposed Host Architecture: armhf Install-Time: 587 Job: r-base_3.2.3-3.dsc Machine Architecture: armhf Package: r-base Package-Time: 2665 Source-Version: 3.2.3-3 Space: 276936 Status: successful Version: 3.2.3-3 ──────────────────────────────────────────────────────────────────────────────── Finished at 20160113-0735 Build needed 00:44:25, 276936k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-8841486'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-8841486/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-8841486'] Unmounting chroot for build PACKAGEBUILD-8841486... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-8841486'] Removing build PACKAGEBUILD-8841486