https://launchpad.net/ubuntu/+source/r-base/4.1.2-1ubuntu1/+build/22387473 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux riscv64-qemu-lcy01-010 5.11.0-1021-generic #22~20.04.1-Ubuntu SMP Wed Sep 29 15:58:33 UTC 2021 riscv64 Buildd toolchain package versions: launchpad-buildd_203~505~ubuntu18.04.1 python3-lpbuildd_203~505~ubuntu18.04.1 sbuild_0.79.0-1ubuntu1 git_1:2.25.1-1ubuntu3.2 dpkg-dev_1.19.7ubuntu3 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 9 Nov 13:12:42 ntpdate[619323]: adjust time server 10.211.37.1 offset -0.000182 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=jammy --arch=riscv64 PACKAGEBUILD-22387473 --image-type chroot /home/buildd/filecache-default/03bec7884d85d5bd8bcd177f093129b6620b2195 Creating target for build PACKAGEBUILD-22387473 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=jammy --arch=riscv64 PACKAGEBUILD-22387473 Starting target for build PACKAGEBUILD-22387473 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=jammy --arch=riscv64 PACKAGEBUILD-22387473 'deb http://ftpmaster.internal/ubuntu jammy main universe' 'deb http://ftpmaster.internal/ubuntu jammy-security main universe' 'deb http://ftpmaster.internal/ubuntu jammy-updates main universe' 'deb http://ftpmaster.internal/ubuntu jammy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-22387473 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=jammy --arch=riscv64 PACKAGEBUILD-22387473 Updating target for build PACKAGEBUILD-22387473 Get:1 http://ftpmaster.internal/ubuntu jammy InRelease [254 kB] Get:2 http://ftpmaster.internal/ubuntu jammy-security InRelease [74.9 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-updates InRelease [74.9 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed InRelease [105 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main riscv64 Packages [1290 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main Translation-en [512 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/universe riscv64 Packages [12.5 MB] Get:8 http://ftpmaster.internal/ubuntu jammy/universe Translation-en [5516 kB] Get:9 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 Packages [173 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main Translation-en [58.1 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/universe riscv64 Packages [969 kB] Get:12 http://ftpmaster.internal/ubuntu jammy-proposed/universe Translation-en [495 kB] Fetched 22.0 MB in 33s (659 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt base-files bsdutils ca-certificates cpp-11 dash debconf debianutils e2fsprogs g++-11 gcc-11 gcc-11-base gpg gpg-agent gpgconf gpgv grep libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libattr1 libblkid1 libcc1-0 libcom-err2 libext2fs2 libgcc-11-dev libgcc-s1 libgcrypt20 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libidn2-0 libisl23 libk5crypto3 libkrb5-3 libkrb5support0 libmount1 libmpc3 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libseccomp2 libselinux1 libsmartcols1 libsqlite3-0 libss2 libstdc++-11-dev libstdc++6 libtasn1-6 libtinfo6 libuuid1 libzstd1 lockfile-progs logsave make mount ncurses-base ncurses-bin pkgbinarymangler sensible-utils tzdata usrmerge util-linux 71 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 55.3 MB of archives. After this operation, 834 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 base-files riscv64 12ubuntu2 [62.9 kB] Get:2 http://ftpmaster.internal/ubuntu jammy/main riscv64 bsdutils riscv64 1:2.37.2-4ubuntu1 [91.2 kB] Get:3 http://ftpmaster.internal/ubuntu jammy/main riscv64 debianutils riscv64 5.5-1 [76.7 kB] Get:4 http://ftpmaster.internal/ubuntu jammy/main riscv64 debconf all 1.5.79 [126 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main riscv64 dash riscv64 0.5.11+git20210903+057cd650a4ed-3 [86.3 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main riscv64 grep riscv64 3.7-1 [151 kB] Get:7 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libncursesw6 riscv64 6.2+20210905-1 [126 kB] Get:8 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libncurses6 riscv64 6.2+20210905-1 [93.2 kB] Get:9 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libtinfo6 riscv64 6.2+20210905-1 [96.4 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 ncurses-bin riscv64 6.2+20210905-1 [173 kB] Get:11 http://ftpmaster.internal/ubuntu jammy/main riscv64 libblkid1 riscv64 2.37.2-4ubuntu1 [148 kB] Get:12 http://ftpmaster.internal/ubuntu jammy/main riscv64 libselinux1 riscv64 3.1-3build3 [70.6 kB] Get:13 http://ftpmaster.internal/ubuntu jammy/main riscv64 libmount1 riscv64 2.37.2-4ubuntu1 [156 kB] Get:14 http://ftpmaster.internal/ubuntu jammy/main riscv64 util-linux riscv64 2.37.2-4ubuntu1 [1122 kB] Get:15 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 ncurses-base all 6.2+20210905-1 [19.9 kB] Get:16 http://ftpmaster.internal/ubuntu jammy/main riscv64 libcc1-0 riscv64 11.2.0-10ubuntu1 [41.9 kB] Get:17 http://ftpmaster.internal/ubuntu jammy/main riscv64 gcc-11-base riscv64 11.2.0-10ubuntu1 [21.0 kB] Get:18 http://ftpmaster.internal/ubuntu jammy/main riscv64 libgcc-s1 riscv64 11.2.0-10ubuntu1 [43.4 kB] Get:19 http://ftpmaster.internal/ubuntu jammy/main riscv64 libgomp1 riscv64 11.2.0-10ubuntu1 [103 kB] Get:20 http://ftpmaster.internal/ubuntu jammy/main riscv64 libatomic1 riscv64 11.2.0-10ubuntu1 [7784 B] Get:21 http://ftpmaster.internal/ubuntu jammy/main riscv64 libasan6 riscv64 11.2.0-10ubuntu1 [2106 kB] Get:22 http://ftpmaster.internal/ubuntu jammy/main riscv64 g++-11 riscv64 11.2.0-10ubuntu1 [9281 kB] Get:23 http://ftpmaster.internal/ubuntu jammy/main riscv64 libstdc++-11-dev riscv64 11.2.0-10ubuntu1 [4754 kB] Get:24 http://ftpmaster.internal/ubuntu jammy/main riscv64 libgcc-11-dev riscv64 11.2.0-10ubuntu1 [2367 kB] Get:25 http://ftpmaster.internal/ubuntu jammy/main riscv64 gcc-11 riscv64 11.2.0-10ubuntu1 [15.8 MB] Get:26 http://ftpmaster.internal/ubuntu jammy/main riscv64 cpp-11 riscv64 11.2.0-10ubuntu1 [7982 kB] Get:27 http://ftpmaster.internal/ubuntu jammy/main riscv64 libstdc++6 riscv64 11.2.0-10ubuntu1 [664 kB] Get:28 http://ftpmaster.internal/ubuntu jammy/main riscv64 libisl23 riscv64 0.24-2 [593 kB] Get:29 http://ftpmaster.internal/ubuntu jammy/main riscv64 libmpc3 riscv64 1.2.1-1 [44.4 kB] Get:30 http://ftpmaster.internal/ubuntu jammy/main riscv64 libzstd1 riscv64 1.4.8+dfsg-3 [370 kB] Get:31 http://ftpmaster.internal/ubuntu jammy/main riscv64 libgpg-error0 riscv64 1.42-3 [61.5 kB] Get:32 http://ftpmaster.internal/ubuntu jammy/main riscv64 libgcrypt20 riscv64 1.9.4-3ubuntu2 [498 kB] Get:33 http://ftpmaster.internal/ubuntu jammy/main riscv64 libapt-pkg6.0 riscv64 2.3.11 [916 kB] Get:34 http://ftpmaster.internal/ubuntu jammy/main riscv64 gpgv riscv64 2.2.27-2ubuntu1 [195 kB] Get:35 http://ftpmaster.internal/ubuntu jammy/main riscv64 libidn2-0 riscv64 2.3.2-2 [67.5 kB] Get:36 http://ftpmaster.internal/ubuntu jammy/main riscv64 libp11-kit0 riscv64 0.24.0-5 [203 kB] Get:37 http://ftpmaster.internal/ubuntu jammy/main riscv64 libtasn1-6 riscv64 4.17.0-2 [38.7 kB] Get:38 http://ftpmaster.internal/ubuntu jammy/main riscv64 libgnutls30 riscv64 3.7.2-2ubuntu1 [858 kB] Get:39 http://ftpmaster.internal/ubuntu jammy/main riscv64 apt riscv64 2.3.11 [1350 kB] Get:40 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libpam0g riscv64 1.4.0-10ubuntu1 [56.7 kB] Get:41 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libpam-modules-bin riscv64 1.4.0-10ubuntu1 [36.6 kB] Get:42 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libpam-modules riscv64 1.4.0-10ubuntu1 [264 kB] Get:43 http://ftpmaster.internal/ubuntu jammy/main riscv64 logsave riscv64 1.46.4-1ubuntu1 [10.3 kB] Get:44 http://ftpmaster.internal/ubuntu jammy/main riscv64 libext2fs2 riscv64 1.46.4-1ubuntu1 [196 kB] Get:45 http://ftpmaster.internal/ubuntu jammy/main riscv64 e2fsprogs riscv64 1.46.4-1ubuntu1 [552 kB] Get:46 http://ftpmaster.internal/ubuntu jammy/main riscv64 mount riscv64 2.37.2-4ubuntu1 [129 kB] Get:47 http://ftpmaster.internal/ubuntu jammy/main riscv64 libattr1 riscv64 1:2.5.1-1 [12.7 kB] Get:48 http://ftpmaster.internal/ubuntu jammy/main riscv64 libcom-err2 riscv64 1.46.4-1ubuntu1 [8994 B] Get:49 http://ftpmaster.internal/ubuntu jammy/main riscv64 libk5crypto3 riscv64 1.18.3-7 [101 kB] Get:50 http://ftpmaster.internal/ubuntu jammy/main riscv64 libkrb5support0 riscv64 1.18.3-7 [30.6 kB] Get:51 http://ftpmaster.internal/ubuntu jammy/main riscv64 libkrb5-3 riscv64 1.18.3-7 [338 kB] Get:52 http://ftpmaster.internal/ubuntu jammy/main riscv64 libgssapi-krb5-2 riscv64 1.18.3-7 [126 kB] Get:53 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libpam-runtime all 1.4.0-10ubuntu1 [40.2 kB] Get:54 http://ftpmaster.internal/ubuntu jammy/main riscv64 libsmartcols1 riscv64 2.37.2-4ubuntu1 [102 kB] Get:55 http://ftpmaster.internal/ubuntu jammy/main riscv64 libuuid1 riscv64 2.37.2-4ubuntu1 [27.0 kB] Get:56 http://ftpmaster.internal/ubuntu jammy/main riscv64 libss2 riscv64 1.46.4-1ubuntu1 [10.7 kB] Get:57 http://ftpmaster.internal/ubuntu jammy/main riscv64 sensible-utils all 0.0.17 [20.1 kB] Get:58 http://ftpmaster.internal/ubuntu jammy/main riscv64 usrmerge all 25ubuntu2 [54.7 kB] Get:59 http://ftpmaster.internal/ubuntu jammy/main riscv64 ca-certificates all 20211016 [148 kB] Get:60 http://ftpmaster.internal/ubuntu jammy/main riscv64 libapparmor1 riscv64 3.0.3-0ubuntu3 [33.3 kB] Get:61 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libseccomp2 riscv64 2.5.1-1ubuntu2 [46.0 kB] Get:62 http://ftpmaster.internal/ubuntu jammy/main riscv64 libsqlite3-0 riscv64 3.36.0-2 [575 kB] Get:63 http://ftpmaster.internal/ubuntu jammy/main riscv64 tzdata all 2021e-1ubuntu1 [343 kB] Get:64 http://ftpmaster.internal/ubuntu jammy/main riscv64 libgdbm6 riscv64 1.22-1 [30.9 kB] Get:65 http://ftpmaster.internal/ubuntu jammy/main riscv64 gpg riscv64 2.2.27-2ubuntu1 [488 kB] Get:66 http://ftpmaster.internal/ubuntu jammy/main riscv64 gpgconf riscv64 2.2.27-2ubuntu1 [115 kB] Get:67 http://ftpmaster.internal/ubuntu jammy/main riscv64 gpg-agent riscv64 2.2.27-2ubuntu1 [231 kB] Get:68 http://ftpmaster.internal/ubuntu jammy/main riscv64 libgdbm-compat4 riscv64 1.22-1 [5824 B] Get:69 http://ftpmaster.internal/ubuntu jammy/main riscv64 lockfile-progs riscv64 0.1.19 [9330 B] Get:70 http://ftpmaster.internal/ubuntu jammy/main riscv64 make riscv64 4.3-4ubuntu2 [164 kB] Get:71 http://ftpmaster.internal/ubuntu jammy/main riscv64 pkgbinarymangler all 149 [32.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 55.3 MB in 12s (4741 kB/s) (Reading database ... 13170 files and directories currently installed.) Preparing to unpack .../base-files_12ubuntu2_riscv64.deb ... Unpacking base-files (12ubuntu2) over (12ubuntu1) ... Setting up base-files (12ubuntu2) ... (Reading database ... 13170 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.37.2-4ubuntu1_riscv64.deb ... Unpacking bsdutils (1:2.37.2-4ubuntu1) over (1:2.36.1-8ubuntu1) ... Setting up bsdutils (1:2.37.2-4ubuntu1) ... (Reading database ... 13170 files and directories currently installed.) Preparing to unpack .../debianutils_5.5-1_riscv64.deb ... Unpacking debianutils (5.5-1) over (4.11.2build1) ... Setting up debianutils (5.5-1) ... update-alternatives: using /usr/bin/which.debianutils to provide /usr/bin/which (which) in auto mode (Reading database ... 13165 files and directories currently installed.) Preparing to unpack .../debconf_1.5.79_all.deb ... Unpacking debconf (1.5.79) over (1.5.77) ... Setting up debconf (1.5.79) ... (Reading database ... 13164 files and directories currently installed.) Preparing to unpack .../dash_0.5.11+git20210903+057cd650a4ed-3_riscv64.deb ... Unpacking dash (0.5.11+git20210903+057cd650a4ed-3) over (0.5.11+git20210120+802ebd4-1build1) ... Setting up dash (0.5.11+git20210903+057cd650a4ed-3) ... (Reading database ... 13164 files and directories currently installed.) Preparing to unpack .../grep_3.7-1_riscv64.deb ... Unpacking grep (3.7-1) over (3.7-0ubuntu1) ... Setting up grep (3.7-1) ... (Reading database ... 13164 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.2+20210905-1_riscv64.deb ... Unpacking libncursesw6:riscv64 (6.2+20210905-1) over (6.2+20201114-2build2) ... Preparing to unpack .../libncurses6_6.2+20210905-1_riscv64.deb ... Unpacking libncurses6:riscv64 (6.2+20210905-1) over (6.2+20201114-2build2) ... Preparing to unpack .../libtinfo6_6.2+20210905-1_riscv64.deb ... Unpacking libtinfo6:riscv64 (6.2+20210905-1) over (6.2+20201114-2build2) ... Setting up libtinfo6:riscv64 (6.2+20210905-1) ... (Reading database ... 13164 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.2+20210905-1_riscv64.deb ... Unpacking ncurses-bin (6.2+20210905-1) over (6.2+20201114-2build2) ... Setting up ncurses-bin (6.2+20210905-1) ... (Reading database ... 13164 files and directories currently installed.) Preparing to unpack .../libblkid1_2.37.2-4ubuntu1_riscv64.deb ... Unpacking libblkid1:riscv64 (2.37.2-4ubuntu1) over (2.36.1-8ubuntu1) ... Setting up libblkid1:riscv64 (2.37.2-4ubuntu1) ... (Reading database ... 13164 files and directories currently installed.) Preparing to unpack .../libselinux1_3.1-3build3_riscv64.deb ... Unpacking libselinux1:riscv64 (3.1-3build3) over (3.1-3build2) ... Setting up libselinux1:riscv64 (3.1-3build3) ... (Reading database ... 13164 files and directories currently installed.) Preparing to unpack .../libmount1_2.37.2-4ubuntu1_riscv64.deb ... Unpacking libmount1:riscv64 (2.37.2-4ubuntu1) over (2.36.1-8ubuntu1) ... Setting up libmount1:riscv64 (2.37.2-4ubuntu1) ... (Reading database ... 13164 files and directories currently installed.) Preparing to unpack .../util-linux_2.37.2-4ubuntu1_riscv64.deb ... Unpacking util-linux (2.37.2-4ubuntu1) over (2.36.1-8ubuntu1) ... Setting up util-linux (2.37.2-4ubuntu1) ... (Reading database ... 13159 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.2+20210905-1_all.deb ... Unpacking ncurses-base (6.2+20210905-1) over (6.2+20201114-2build2) ... Setting up ncurses-base (6.2+20210905-1) ... (Reading database ... 13159 files and directories currently installed.) Preparing to unpack .../libcc1-0_11.2.0-10ubuntu1_riscv64.deb ... Unpacking libcc1-0:riscv64 (11.2.0-10ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../gcc-11-base_11.2.0-10ubuntu1_riscv64.deb ... Unpacking gcc-11-base:riscv64 (11.2.0-10ubuntu1) over (11.2.0-7ubuntu2) ... Setting up gcc-11-base:riscv64 (11.2.0-10ubuntu1) ... (Reading database ... 13159 files and directories currently installed.) Preparing to unpack .../libgcc-s1_11.2.0-10ubuntu1_riscv64.deb ... Unpacking libgcc-s1:riscv64 (11.2.0-10ubuntu1) over (11.2.0-7ubuntu2) ... Setting up libgcc-s1:riscv64 (11.2.0-10ubuntu1) ... (Reading database ... 13159 files and directories currently installed.) Preparing to unpack .../0-libgomp1_11.2.0-10ubuntu1_riscv64.deb ... Unpacking libgomp1:riscv64 (11.2.0-10ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../1-libatomic1_11.2.0-10ubuntu1_riscv64.deb ... Unpacking libatomic1:riscv64 (11.2.0-10ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../2-libasan6_11.2.0-10ubuntu1_riscv64.deb ... Unpacking libasan6:riscv64 (11.2.0-10ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../3-g++-11_11.2.0-10ubuntu1_riscv64.deb ... Unpacking g++-11 (11.2.0-10ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../4-libstdc++-11-dev_11.2.0-10ubuntu1_riscv64.deb ... Unpacking libstdc++-11-dev:riscv64 (11.2.0-10ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../5-libgcc-11-dev_11.2.0-10ubuntu1_riscv64.deb ... Unpacking libgcc-11-dev:riscv64 (11.2.0-10ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../6-gcc-11_11.2.0-10ubuntu1_riscv64.deb ... Unpacking gcc-11 (11.2.0-10ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../7-cpp-11_11.2.0-10ubuntu1_riscv64.deb ... Unpacking cpp-11 (11.2.0-10ubuntu1) over (11.2.0-7ubuntu2) ... Preparing to unpack .../8-libstdc++6_11.2.0-10ubuntu1_riscv64.deb ... Unpacking libstdc++6:riscv64 (11.2.0-10ubuntu1) over (11.2.0-7ubuntu2) ... Setting up libstdc++6:riscv64 (11.2.0-10ubuntu1) ... (Reading database ... 13159 files and directories currently installed.) Preparing to unpack .../libisl23_0.24-2_riscv64.deb ... Unpacking libisl23:riscv64 (0.24-2) over (0.24-1build1) ... Preparing to unpack .../libmpc3_1.2.1-1_riscv64.deb ... Unpacking libmpc3:riscv64 (1.2.1-1) over (1.2.0-1build2) ... Preparing to unpack .../libzstd1_1.4.8+dfsg-3_riscv64.deb ... Unpacking libzstd1:riscv64 (1.4.8+dfsg-3) over (1.4.8+dfsg-2.1build1) ... Setting up libzstd1:riscv64 (1.4.8+dfsg-3) ... (Reading database ... 13159 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.42-3_riscv64.deb ... Unpacking libgpg-error0:riscv64 (1.42-3) over (1.38-2build2) ... Setting up libgpg-error0:riscv64 (1.42-3) ... (Reading database ... 13159 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.9.4-3ubuntu2_riscv64.deb ... Unpacking libgcrypt20:riscv64 (1.9.4-3ubuntu2) over (1.8.7-5ubuntu2) ... Setting up libgcrypt20:riscv64 (1.9.4-3ubuntu2) ... (Reading database ... 13159 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.3.11_riscv64.deb ... Unpacking libapt-pkg6.0:riscv64 (2.3.11) over (2.3.9) ... Setting up libapt-pkg6.0:riscv64 (2.3.11) ... (Reading database ... 13159 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.27-2ubuntu1_riscv64.deb ... Unpacking gpgv (2.2.27-2ubuntu1) over (2.2.20-1ubuntu4) ... Setting up gpgv (2.2.27-2ubuntu1) ... (Reading database ... 13159 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.3.2-2_riscv64.deb ... Unpacking libidn2-0:riscv64 (2.3.2-2) over (2.3.1-1build1) ... Setting up libidn2-0:riscv64 (2.3.2-2) ... (Reading database ... 13159 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.24.0-5_riscv64.deb ... Unpacking libp11-kit0:riscv64 (0.24.0-5) over (0.23.22-1build1) ... Setting up libp11-kit0:riscv64 (0.24.0-5) ... (Reading database ... 13159 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.17.0-2_riscv64.deb ... Unpacking libtasn1-6:riscv64 (4.17.0-2) over (4.16.0-2build1) ... Setting up libtasn1-6:riscv64 (4.17.0-2) ... (Reading database ... 13159 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.7.2-2ubuntu1_riscv64.deb ... Unpacking libgnutls30:riscv64 (3.7.2-2ubuntu1) over (3.7.1-5ubuntu1) ... Setting up libgnutls30:riscv64 (3.7.2-2ubuntu1) ... (Reading database ... 13159 files and directories currently installed.) Preparing to unpack .../apt_2.3.11_riscv64.deb ... Unpacking apt (2.3.11) over (2.3.9) ... Setting up apt (2.3.11) ... (Reading database ... 13159 files and directories currently installed.) Preparing to unpack .../libpam0g_1.4.0-10ubuntu1_riscv64.deb ... Unpacking libpam0g:riscv64 (1.4.0-10ubuntu1) over (1.3.1-5ubuntu11) ... Setting up libpam0g:riscv64 (1.4.0-10ubuntu1) ... Checking for services that may need to be restarted...Checking init scripts... Nothing to restart. (Reading database ... 13159 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.4.0-10ubuntu1_riscv64.deb ... Unpacking libpam-modules-bin (1.4.0-10ubuntu1) over (1.3.1-5ubuntu11) ... Setting up libpam-modules-bin (1.4.0-10ubuntu1) ... (Reading database ... 13157 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.4.0-10ubuntu1_riscv64.deb ... Unpacking libpam-modules:riscv64 (1.4.0-10ubuntu1) over (1.3.1-5ubuntu11) ... Setting up libpam-modules:riscv64 (1.4.0-10ubuntu1) ... Installing new version of config file /etc/security/namespace.conf ... Installing new version of config file /etc/security/pam_env.conf ... (Reading database ... 13158 files and directories currently installed.) Preparing to unpack .../logsave_1.46.4-1ubuntu1_riscv64.deb ... Unpacking logsave (1.46.4-1ubuntu1) over (1.46.3-1ubuntu3) ... Preparing to unpack .../libext2fs2_1.46.4-1ubuntu1_riscv64.deb ... Unpacking libext2fs2:riscv64 (1.46.4-1ubuntu1) over (1.46.3-1ubuntu3) ... Setting up libext2fs2:riscv64 (1.46.4-1ubuntu1) ... (Reading database ... 13158 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.46.4-1ubuntu1_riscv64.deb ... Unpacking e2fsprogs (1.46.4-1ubuntu1) over (1.46.3-1ubuntu3) ... Preparing to unpack .../mount_2.37.2-4ubuntu1_riscv64.deb ... Unpacking mount (2.37.2-4ubuntu1) over (2.36.1-8ubuntu1) ... Preparing to unpack .../libattr1_1%3a2.5.1-1_riscv64.deb ... Unpacking libattr1:riscv64 (1:2.5.1-1) over (1:2.4.48-6build2) ... Setting up libattr1:riscv64 (1:2.5.1-1) ... Installing new version of config file /etc/xattr.conf ... (Reading database ... 13159 files and directories currently installed.) Preparing to unpack .../libcom-err2_1.46.4-1ubuntu1_riscv64.deb ... Unpacking libcom-err2:riscv64 (1.46.4-1ubuntu1) over (1.46.3-1ubuntu3) ... Setting up libcom-err2:riscv64 (1.46.4-1ubuntu1) ... (Reading database ... 13159 files and directories currently installed.) Preparing to unpack .../libk5crypto3_1.18.3-7_riscv64.deb ... Unpacking libk5crypto3:riscv64 (1.18.3-7) over (1.18.3-6) ... Setting up libk5crypto3:riscv64 (1.18.3-7) ... (Reading database ... 13159 files and directories currently installed.) Preparing to unpack .../libkrb5support0_1.18.3-7_riscv64.deb ... Unpacking libkrb5support0:riscv64 (1.18.3-7) over (1.18.3-6) ... Setting up libkrb5support0:riscv64 (1.18.3-7) ... (Reading database ... 13159 files and directories currently installed.) Preparing to unpack .../libkrb5-3_1.18.3-7_riscv64.deb ... Unpacking libkrb5-3:riscv64 (1.18.3-7) over (1.18.3-6) ... Setting up libkrb5-3:riscv64 (1.18.3-7) ... (Reading database ... 13159 files and directories currently installed.) Preparing to unpack .../libgssapi-krb5-2_1.18.3-7_riscv64.deb ... Unpacking libgssapi-krb5-2:riscv64 (1.18.3-7) over (1.18.3-6) ... Setting up libgssapi-krb5-2:riscv64 (1.18.3-7) ... (Reading database ... 13159 files and directories currently installed.) Preparing to unpack .../libpam-runtime_1.4.0-10ubuntu1_all.deb ... Unpacking libpam-runtime (1.4.0-10ubuntu1) over (1.3.1-5ubuntu11) ... Setting up libpam-runtime (1.4.0-10ubuntu1) ... (Reading database ... 13159 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.37.2-4ubuntu1_riscv64.deb ... Unpacking libsmartcols1:riscv64 (2.37.2-4ubuntu1) over (2.36.1-8ubuntu1) ... Setting up libsmartcols1:riscv64 (2.37.2-4ubuntu1) ... (Reading database ... 13159 files and directories currently installed.) Preparing to unpack .../libuuid1_2.37.2-4ubuntu1_riscv64.deb ... Unpacking libuuid1:riscv64 (2.37.2-4ubuntu1) over (2.36.1-8ubuntu1) ... Setting up libuuid1:riscv64 (2.37.2-4ubuntu1) ... (Reading database ... 13159 files and directories currently installed.) Preparing to unpack .../00-libss2_1.46.4-1ubuntu1_riscv64.deb ... Unpacking libss2:riscv64 (1.46.4-1ubuntu1) over (1.46.3-1ubuntu3) ... Preparing to unpack .../01-sensible-utils_0.0.17_all.deb ... Unpacking sensible-utils (0.0.17) over (0.0.14) ... Preparing to unpack .../02-usrmerge_25ubuntu2_all.deb ... Unpacking usrmerge (25ubuntu2) over (25ubuntu1) ... Preparing to unpack .../03-ca-certificates_20211016_all.deb ... Unpacking ca-certificates (20211016) over (20210119ubuntu1) ... Preparing to unpack .../04-libapparmor1_3.0.3-0ubuntu3_riscv64.deb ... Unpacking libapparmor1:riscv64 (3.0.3-0ubuntu3) over (3.0.3-0ubuntu1) ... Preparing to unpack .../05-libseccomp2_2.5.1-1ubuntu2_riscv64.deb ... Unpacking libseccomp2:riscv64 (2.5.1-1ubuntu2) over (2.5.1-1ubuntu1) ... Preparing to unpack .../06-libsqlite3-0_3.36.0-2_riscv64.deb ... Unpacking libsqlite3-0:riscv64 (3.36.0-2) over (3.35.5-1) ... Preparing to unpack .../07-tzdata_2021e-1ubuntu1_all.deb ... Unpacking tzdata (2021e-1ubuntu1) over (2021a-2ubuntu1) ... Preparing to unpack .../08-libgdbm6_1.22-1_riscv64.deb ... Unpacking libgdbm6:riscv64 (1.22-1) over (1.19-2build1) ... Preparing to unpack .../09-gpg_2.2.27-2ubuntu1_riscv64.deb ... Unpacking gpg (2.2.27-2ubuntu1) over (2.2.20-1ubuntu4) ... Preparing to unpack .../10-gpgconf_2.2.27-2ubuntu1_riscv64.deb ... Unpacking gpgconf (2.2.27-2ubuntu1) over (2.2.20-1ubuntu4) ... Preparing to unpack .../11-gpg-agent_2.2.27-2ubuntu1_riscv64.deb ... Unpacking gpg-agent (2.2.27-2ubuntu1) over (2.2.20-1ubuntu4) ... Preparing to unpack .../12-libgdbm-compat4_1.22-1_riscv64.deb ... Unpacking libgdbm-compat4:riscv64 (1.22-1) over (1.19-2build1) ... Preparing to unpack .../13-lockfile-progs_0.1.19_riscv64.deb ... Unpacking lockfile-progs (0.1.19) over (0.1.18build1) ... Preparing to unpack .../14-make_4.3-4ubuntu2_riscv64.deb ... Unpacking make (4.3-4ubuntu2) over (4.3-4ubuntu1) ... Preparing to unpack .../15-pkgbinarymangler_149_all.deb ... Unpacking pkgbinarymangler (149) over (148) ... Setting up libapparmor1:riscv64 (3.0.3-0ubuntu3) ... Setting up libsqlite3-0:riscv64 (3.36.0-2) ... Setting up libgomp1:riscv64 (11.2.0-10ubuntu1) ... Setting up libseccomp2:riscv64 (2.5.1-1ubuntu2) ... Setting up libasan6:riscv64 (11.2.0-10ubuntu1) ... Setting up tzdata (2021e-1ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Nov 9 13:18:04 UTC 2021. Universal Time is now: Tue Nov 9 13:18:04 UTC 2021. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 7 added, 8 removed; done. Setting up make (4.3-4ubuntu2) ... Setting up libncurses6:riscv64 (6.2+20210905-1) ... Setting up libmpc3:riscv64 (1.2.1-1) ... Setting up lockfile-progs (0.1.19) ... Setting up libatomic1:riscv64 (11.2.0-10ubuntu1) ... Setting up usrmerge (25ubuntu2) ... Setting up libss2:riscv64 (1.46.4-1ubuntu1) ... Setting up libncursesw6:riscv64 (6.2+20210905-1) ... Setting up logsave (1.46.4-1ubuntu1) ... Setting up libgcc-11-dev:riscv64 (11.2.0-10ubuntu1) ... Setting up mount (2.37.2-4ubuntu1) ... Setting up sensible-utils (0.0.17) ... Setting up gpgconf (2.2.27-2ubuntu1) ... Setting up libisl23:riscv64 (0.24-2) ... Setting up libcc1-0:riscv64 (11.2.0-10ubuntu1) ... Setting up gpg (2.2.27-2ubuntu1) ... Setting up libgdbm6:riscv64 (1.22-1) ... Setting up cpp-11 (11.2.0-10ubuntu1) ... Setting up gpg-agent (2.2.27-2ubuntu1) ... Setting up pkgbinarymangler (149) ... Setting up e2fsprogs (1.46.4-1ubuntu1) ... Installing new version of config file /etc/mke2fs.conf ... Setting up libgdbm-compat4:riscv64 (1.22-1) ... Setting up libstdc++-11-dev:riscv64 (11.2.0-10ubuntu1) ... Setting up gcc-11 (11.2.0-10ubuntu1) ... Setting up g++-11 (11.2.0-10ubuntu1) ... Processing triggers for libc-bin (2.34-0ubuntu3) ... Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-22387473 riscv64 jammy-proposed -c chroot:build-PACKAGEBUILD-22387473 --arch=riscv64 --dist=jammy-proposed --nolog r-base_4.1.2-1ubuntu1.dsc Initiating build PACKAGEBUILD-22387473 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 5.11.0-1021-generic #22~20.04.1-Ubuntu SMP Wed Sep 29 15:58:33 UTC 2021 riscv64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on riscv64-qemu-lcy01-010.buildd +==============================================================================+ | r-base 4.1.2-1ubuntu1 (riscv64) Tue, 09 Nov 2021 13:20:19 +0000 | +==============================================================================+ Package: r-base Version: 4.1.2-1ubuntu1 Source Version: 4.1.2-1ubuntu1 Distribution: jammy-proposed Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-22387473/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/r-base-3b8eI3/resolver-85yedo' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-base_4.1.2-1ubuntu1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/r-base-3b8eI3/r-base-4.1.2' with '<>' I: NOTICE: Log filtering will replace 'build/r-base-3b8eI3' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: gcc (>= 4:4.9.2-2), g++ (>= 4:4.9.2-2), gfortran (>= 4:4.9.2-2), libblas-dev, liblapack-dev, tcl8.6-dev, tk8.6-dev, bison, groff-base, libncurses5-dev, libreadline-dev, debhelper-compat (= 11), texinfo (>= 4.1-2), libbz2-dev, liblzma-dev, libpcre2-dev, libpcre3-dev, libcurl4-openssl-dev | libcurl4-dev, xdg-utils, zlib1g-dev, libpng-dev, libjpeg-dev, libx11-dev, libxt-dev, x11proto-core-dev, libpango1.0-dev, libcairo2-dev, libtiff5-dev, xvfb, xauth, xfonts-base, texlive-base, texlive-latex-base, texlive-plain-generic, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, default-jdk | openjdk-10-jdk, mpack, bash-completion, build-essential, fakeroot Filtered Build-Depends: gcc (>= 4:4.9.2-2), g++ (>= 4:4.9.2-2), gfortran (>= 4:4.9.2-2), libblas-dev, liblapack-dev, tcl8.6-dev, tk8.6-dev, bison, groff-base, libncurses5-dev, libreadline-dev, debhelper-compat (= 11), texinfo (>= 4.1-2), libbz2-dev, liblzma-dev, libpcre2-dev, libpcre3-dev, libcurl4-openssl-dev | libcurl4-dev, xdg-utils, zlib1g-dev, libpng-dev, libjpeg-dev, libx11-dev, libxt-dev, x11proto-core-dev, libpango1.0-dev, libcairo2-dev, libtiff5-dev, xvfb, xauth, xfonts-base, texlive-base, texlive-latex-base, texlive-plain-generic, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, default-jdk | openjdk-10-jdk, mpack, bash-completion, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [678 B] Get:5 copy:/<>/apt_archive ./ Packages [731 B] Fetched 2372 B in 1s (3067 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bash-completion bison bsdextrautils ca-certificates-java debhelper debugedit default-jdk default-jdk-headless default-jre default-jre-headless dh-autoreconf dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-lmodern gettext gettext-base gfortran gfortran-11 gir1.2-freedesktop gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 gir1.2-pango-1.0 groff-base icu-devtools intltool-debian java-common libapache-pom-java libarchive-zip-perl libasound2 libasound2-data libavahi-client3 libavahi-common-data libavahi-common3 libblas-dev libblas3 libblkid-dev libbrotli-dev libbrotli1 libbsd0 libbz2-dev libcairo-gobject2 libcairo-script-interpreter2 libcairo2 libcairo2-dev libcommons-logging-java libcommons-parent-java libcups2 libcurl4 libcurl4-openssl-dev libdatrie-dev libdatrie1 libdbus-1-3 libdebhelper-perl libdeflate-dev libdeflate0 libdrm-amdgpu1 libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libdw1 libedit2 libelf1 libexpat1 libexpat1-dev libffi-dev libfile-stripnondeterminism-perl libfontbox-java libfontconfig-dev libfontconfig1 libfontconfig1-dev libfontenc1 libfreetype-dev libfreetype6 libfreetype6-dev libfribidi-dev libfribidi0 libgfortran-11-dev libgfortran5 libgif7 libgirepository-1.0-1 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libgraphite2-dev libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libice-dev libice6 libicu-dev libicu67 libjbig-dev libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-jquery libkpathsea6 liblapack-dev liblapack3 liblcms2-2 libldap-2.5-0 libllvm12 liblzma-dev liblzo2-2 libmagic-mgc libmagic1 libmd0 libmime-charset-perl libmount-dev libmpdec3 libncurses-dev libncurses5-dev libnghttp2-14 libnspr4 libnss3 libpango-1.0-0 libpango1.0-dev libpangocairo-1.0-0 libpangoft2-1.0-0 libpangoxft-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpcsclite1 libpdfbox-java libpipeline1 libpixman-1-0 libpixman-1-dev libpng-dev libpsl5 libptexenc1 libpthread-stubs0-dev libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libreadline-dev librtmp1 libsasl2-2 libsasl2-modules-db libselinux1-dev libsensors-config libsensors5 libsepol1-dev libsigsegv2 libsm-dev libsm6 libsombok3 libssh-4 libsub-override-perl libsynctex2 libtcl8.6 libteckit0 libtexlua53 libtext-unidecode-perl libthai-data libthai-dev libthai0 libtiff-dev libtiff5 libtiff5-dev libtiffxx5 libtk8.6 libtool libuchardet0 libunicode-linebreak-perl libvulkan1 libwebp6 libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-render0-dev libxcb-shm0 libxcb-shm0-dev libxcb-sync1 libxcb-xfixes0 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxfont2 libxft-dev libxft2 libxi6 libxkbfile1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml2 libxmu6 libxmuu1 libxpm4 libxrender-dev libxrender1 libxshmfence1 libxss-dev libxss1 libxt-dev libxt6 libxtst6 libxxf86vm1 libzzip-0-13 lmodern m4 man-db media-types mpack openjdk-11-jdk openjdk-11-jdk-headless openjdk-11-jre openjdk-11-jre-headless pango1.0-tools pkg-config po-debconf preview-latex-style python3 python3-distutils python3-lib2to3 python3-minimal python3.9 python3.9-minimal t1utils tcl8.6 tcl8.6-dev tex-common texinfo texlive-base texlive-binaries texlive-extra-utils texlive-fonts-extra texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-luatex texlive-pictures texlive-plain-generic tk8.6 tk8.6-dev ucf uuid-dev x11-common x11-xkb-utils x11proto-core-dev x11proto-dev xauth xdg-utils xfonts-base xfonts-encodings xfonts-utils xkb-data xorg-sgml-doctools xserver-common xtrans-dev xvfb zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc bison-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc gfortran-11-doc libcoarrays-dev groff libasound2-plugins alsa-utils liblapack-doc libcairo2-doc libavalon-framework-java libcommons-logging-java-doc libexcalibur-logkit-java liblog4j1.2-java cups-common libcurl4-doc libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev libssl-dev libdatrie-doc freetype2-doc libgirepository1.0-dev libglib2.0-doc libgdk-pixbuf2.0-bin | libgdk-pixbuf2.0-dev libxml2-utils libgraphite2-utils libice-doc icu-doc liblcms2-utils liblzma-doc libencode-hanextra-perl libpod2-base-perl ncurses-doc imagemagick libpango1.0-doc pcscd readline-doc lm-sensors libsm-doc libthai-doc libtool-doc gcj-jdk libx11-doc libxcb-doc libxext-doc libxt-doc m4-doc apparmor less www-browser default-mta | mail-transport-agent inews openjdk-11-demo openjdk-11-source visualvm libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic graphicsmagick libmail-box-perl python3-doc python3-tk python3-venv python3.9-venv python3.9-doc binfmt-support tcl-tclreadline tcl8.6-doc ghostscript gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec chktex dvidvi dvipng fragmaster lacheck latexdiff latexmk purifyeps xindy cm-super texlive-fonts-extra-doc texlive-fonts-recommended-doc texlive-latex-base-doc python3-pygments icc-profiles libfile-which-perl libspreadsheet-parseexcel-perl texlive-latex-extra-doc texlive-latex-recommended-doc texlive-pstricks dot2tex prerex ruby-tcltk | libtcltk-ruby texlive-pictures-doc vprerex tk8.6-doc Recommended packages: curl | wget | lynx alsa-ucm-conf alsa-topology-conf bzip2-doc dbus libarchive-cpio-perl shared-mime-info xdg-user-dirs javascript-common libldap-common libpng-tools publicsuffix libsasl2-modules libltdl-dev mesa-vulkan-drivers | vulkan-icd libwww-perl libxml-sax-expat-perl libatk-wrapper-java-jni fonts-dejavu-extra libmail-sendmail-perl dvisvgm ghostscript libfile-homedir-perl liblog-log4perl-perl libyaml-tiny-perl ruby fonts-adf-accanthis fonts-adf-berenis fonts-adf-gillius fonts-adf-universalis fonts-cabin fonts-cantarell fonts-comfortaa fonts-croscore fonts-crosextra-caladea fonts-crosextra-carlito fonts-ebgaramond fonts-ebgaramond-extra fonts-font-awesome fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga fonts-gfs-solomos fonts-go fonts-junicode fonts-lato fonts-linuxlibertine fonts-lobstertwo fonts-noto-color-emoji fonts-noto-core fonts-noto-mono fonts-oflb-asana-math fonts-open-sans fonts-roboto-unhinted fonts-sil-charis fonts-sil-gentium fonts-sil-gentium-basic fonts-sil-gentiumplus fonts-sil-gentiumplus-compact fonts-stix texlive-fonts-extra-links tex-gyre tipa tk xterm | x-terminal-emulator libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bash-completion bison bsdextrautils ca-certificates-java debhelper debugedit default-jdk default-jdk-headless default-jre default-jre-headless dh-autoreconf dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-lmodern gettext gettext-base gfortran gfortran-11 gir1.2-freedesktop gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 gir1.2-pango-1.0 groff-base icu-devtools intltool-debian java-common libapache-pom-java libarchive-zip-perl libasound2 libasound2-data libavahi-client3 libavahi-common-data libavahi-common3 libblas-dev libblas3 libblkid-dev libbrotli-dev libbrotli1 libbsd0 libbz2-dev libcairo-gobject2 libcairo-script-interpreter2 libcairo2 libcairo2-dev libcommons-logging-java libcommons-parent-java libcups2 libcurl4 libcurl4-openssl-dev libdatrie-dev libdatrie1 libdbus-1-3 libdebhelper-perl libdeflate-dev libdeflate0 libdrm-amdgpu1 libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libdw1 libedit2 libelf1 libexpat1 libexpat1-dev libffi-dev libfile-stripnondeterminism-perl libfontbox-java libfontconfig-dev libfontconfig1 libfontconfig1-dev libfontenc1 libfreetype-dev libfreetype6 libfreetype6-dev libfribidi-dev libfribidi0 libgfortran-11-dev libgfortran5 libgif7 libgirepository-1.0-1 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libgraphite2-dev libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libice-dev libice6 libicu-dev libicu67 libjbig-dev libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-jquery libkpathsea6 liblapack-dev liblapack3 liblcms2-2 libldap-2.5-0 libllvm12 liblzma-dev liblzo2-2 libmagic-mgc libmagic1 libmd0 libmime-charset-perl libmount-dev libmpdec3 libncurses-dev libncurses5-dev libnghttp2-14 libnspr4 libnss3 libpango-1.0-0 libpango1.0-dev libpangocairo-1.0-0 libpangoft2-1.0-0 libpangoxft-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpcsclite1 libpdfbox-java libpipeline1 libpixman-1-0 libpixman-1-dev libpng-dev libpsl5 libptexenc1 libpthread-stubs0-dev libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libreadline-dev librtmp1 libsasl2-2 libsasl2-modules-db libselinux1-dev libsensors-config libsensors5 libsepol1-dev libsigsegv2 libsm-dev libsm6 libsombok3 libssh-4 libsub-override-perl libsynctex2 libtcl8.6 libteckit0 libtexlua53 libtext-unidecode-perl libthai-data libthai-dev libthai0 libtiff-dev libtiff5 libtiff5-dev libtiffxx5 libtk8.6 libtool libuchardet0 libunicode-linebreak-perl libvulkan1 libwebp6 libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-render0-dev libxcb-shm0 libxcb-shm0-dev libxcb-sync1 libxcb-xfixes0 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxfont2 libxft-dev libxft2 libxi6 libxkbfile1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml2 libxmu6 libxmuu1 libxpm4 libxrender-dev libxrender1 libxshmfence1 libxss-dev libxss1 libxt-dev libxt6 libxtst6 libxxf86vm1 libzzip-0-13 lmodern m4 man-db media-types mpack openjdk-11-jdk openjdk-11-jdk-headless openjdk-11-jre openjdk-11-jre-headless pango1.0-tools pkg-config po-debconf preview-latex-style python3 python3-distutils python3-lib2to3 python3-minimal python3.9 python3.9-minimal sbuild-build-depends-main-dummy t1utils tcl8.6 tcl8.6-dev tex-common texinfo texlive-base texlive-binaries texlive-extra-utils texlive-fonts-extra texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-luatex texlive-pictures texlive-plain-generic tk8.6 tk8.6-dev ucf uuid-dev x11-common x11-xkb-utils x11proto-core-dev x11proto-dev xauth xdg-utils xfonts-base xfonts-encodings xfonts-utils xkb-data xorg-sgml-doctools xserver-common xtrans-dev xvfb zlib1g-dev 0 upgraded, 298 newly installed, 0 to remove and 0 not upgraded. Need to get 979 MB of archives. After this operation, 2780 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [954 B] Get:2 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libpython3.9-minimal riscv64 3.9.8-1 [772 kB] Get:3 http://ftpmaster.internal/ubuntu jammy/main riscv64 libexpat1 riscv64 2.4.1-3 [83.6 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 python3.9-minimal riscv64 3.9.8-1 [1686 kB] Get:5 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 python3-minimal riscv64 3.9.7-4 [24.7 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main riscv64 media-types all 4.0.0 [22.2 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/main riscv64 libmpdec3 riscv64 2.5.1-2build1 [84.9 kB] Get:8 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libpython3.9-stdlib riscv64 3.9.8-1 [1698 kB] Get:9 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 python3.9 riscv64 3.9.8-1 [437 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libpython3-stdlib riscv64 3.9.7-4 [7298 B] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 python3 riscv64 3.9.7-4 [22.8 kB] Get:12 http://ftpmaster.internal/ubuntu jammy/main riscv64 bsdextrautils riscv64 2.37.2-4ubuntu1 [81.4 kB] Get:13 http://ftpmaster.internal/ubuntu jammy/main riscv64 libuchardet0 riscv64 0.0.7-1build1 [78.9 kB] Get:14 http://ftpmaster.internal/ubuntu jammy/main riscv64 groff-base riscv64 1.22.4-7 [925 kB] Get:15 http://ftpmaster.internal/ubuntu jammy/main riscv64 libpipeline1 riscv64 1.5.4-1 [25.9 kB] Get:16 http://ftpmaster.internal/ubuntu jammy/main riscv64 man-db riscv64 2.9.4-2build1 [1138 kB] Get:17 http://ftpmaster.internal/ubuntu jammy/main riscv64 ucf all 3.0043 [56.1 kB] Get:18 http://ftpmaster.internal/ubuntu jammy/universe riscv64 tex-common all 6.17 [33.7 kB] Get:19 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libglib2.0-0 riscv64 2.70.1-1 [1288 kB] Get:20 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libgirepository-1.0-1 riscv64 1.70.0-2ubuntu1 [80.7 kB] Get:21 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 gir1.2-glib-2.0 riscv64 1.70.0-2ubuntu1 [163 kB] Get:22 http://ftpmaster.internal/ubuntu jammy/main riscv64 libmd0 riscv64 1.0.4-1 [30.0 kB] Get:23 http://ftpmaster.internal/ubuntu jammy/main riscv64 libbsd0 riscv64 0.11.3-1ubuntu3 [40.5 kB] Get:24 http://ftpmaster.internal/ubuntu jammy/main riscv64 libdbus-1-3 riscv64 1.12.20-2ubuntu2 [174 kB] Get:25 http://ftpmaster.internal/ubuntu jammy/main riscv64 libelf1 riscv64 0.185-2 [46.6 kB] Get:26 http://ftpmaster.internal/ubuntu jammy/main riscv64 libfribidi0 riscv64 1.0.8-2ubuntu2 [25.3 kB] Get:27 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libglib2.0-data all 2.70.1-1 [6678 B] Get:28 http://ftpmaster.internal/ubuntu jammy/main riscv64 libicu67 riscv64 67.1-7ubuntu1 [9987 kB] Get:29 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libxml2 riscv64 2.9.12+dfsg-5 [605 kB] Get:30 http://ftpmaster.internal/ubuntu jammy/main riscv64 xkb-data all 2.33-1 [394 kB] Get:31 http://ftpmaster.internal/ubuntu jammy/main riscv64 bash-completion all 1:2.11-4ubuntu1 [180 kB] Get:32 http://ftpmaster.internal/ubuntu jammy/main riscv64 libmagic-mgc riscv64 1:5.39-3build1 [236 kB] Get:33 http://ftpmaster.internal/ubuntu jammy/main riscv64 libmagic1 riscv64 1:5.39-3build1 [89.0 kB] Get:34 http://ftpmaster.internal/ubuntu jammy/main riscv64 file riscv64 1:5.39-3build1 [23.5 kB] Get:35 http://ftpmaster.internal/ubuntu jammy/main riscv64 gettext-base riscv64 0.21-4ubuntu3 [37.2 kB] Get:36 http://ftpmaster.internal/ubuntu jammy/main riscv64 libdrm-common all 2.4.107-8ubuntu1 [5490 B] Get:37 http://ftpmaster.internal/ubuntu jammy/main riscv64 libdrm2 riscv64 2.4.107-8ubuntu1 [34.2 kB] Get:38 http://ftpmaster.internal/ubuntu jammy/main riscv64 libedit2 riscv64 3.1-20210910-1 [81.8 kB] Get:39 http://ftpmaster.internal/ubuntu jammy/main riscv64 libpsl5 riscv64 0.21.0-1.2build1 [56.4 kB] Get:40 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxau6 riscv64 1:1.0.9-1build4 [6784 B] Get:41 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxdmcp6 riscv64 1:1.1.3-0ubuntu4 [10.4 kB] Get:42 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxcb1 riscv64 1.14-3ubuntu2 [42.6 kB] Get:43 http://ftpmaster.internal/ubuntu jammy/main riscv64 libx11-data all 2:1.7.2-2 [123 kB] Get:44 http://ftpmaster.internal/ubuntu jammy/main riscv64 libx11-6 riscv64 2:1.7.2-2 [619 kB] Get:45 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxext6 riscv64 2:1.3.4-0ubuntu4 [27.1 kB] Get:46 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxmuu1 riscv64 2:1.1.3-0ubuntu2 [9320 B] Get:47 http://ftpmaster.internal/ubuntu jammy/main riscv64 xauth riscv64 1:1.1-1build1 [24.9 kB] Get:48 http://ftpmaster.internal/ubuntu jammy/main riscv64 libsigsegv2 riscv64 2.13-1ubuntu2 [13.6 kB] Get:49 http://ftpmaster.internal/ubuntu jammy/main riscv64 m4 riscv64 1.4.18-5ubuntu1 [193 kB] Get:50 http://ftpmaster.internal/ubuntu jammy/main riscv64 autoconf all 2.71-2 [338 kB] Get:51 http://ftpmaster.internal/ubuntu jammy/main riscv64 autotools-dev all 20180224.1+nmu1 [39.4 kB] Get:52 http://ftpmaster.internal/ubuntu jammy/main riscv64 automake all 1:1.16.5-1ubuntu1 [558 kB] Get:53 http://ftpmaster.internal/ubuntu jammy/main riscv64 autopoint all 0.21-4ubuntu3 [422 kB] Get:54 http://ftpmaster.internal/ubuntu jammy/main riscv64 bison riscv64 2:3.8.2+dfsg-1 [734 kB] Get:55 http://ftpmaster.internal/ubuntu jammy/main riscv64 java-common all 0.72build1 [6892 B] Get:56 http://ftpmaster.internal/ubuntu jammy/main riscv64 libavahi-common-data riscv64 0.8-5ubuntu4 [24.2 kB] Get:57 http://ftpmaster.internal/ubuntu jammy/main riscv64 libavahi-common3 riscv64 0.8-5ubuntu4 [20.0 kB] Get:58 http://ftpmaster.internal/ubuntu jammy/main riscv64 libavahi-client3 riscv64 0.8-5ubuntu4 [24.6 kB] Get:59 http://ftpmaster.internal/ubuntu jammy/main riscv64 libcups2 riscv64 2.3.3op2-7ubuntu2 [239 kB] Get:60 http://ftpmaster.internal/ubuntu jammy/main riscv64 liblcms2-2 riscv64 2.12~rc1-2build1 [143 kB] Get:61 http://ftpmaster.internal/ubuntu jammy/main riscv64 libjpeg-turbo8 riscv64 2.0.6-0ubuntu3 [108 kB] Get:62 http://ftpmaster.internal/ubuntu jammy/main riscv64 libjpeg8 riscv64 8c-2ubuntu8 [2224 B] Get:63 http://ftpmaster.internal/ubuntu jammy/main riscv64 libbrotli1 riscv64 1.0.9-2build4 [330 kB] Get:64 http://ftpmaster.internal/ubuntu jammy/main riscv64 libfreetype6 riscv64 2.11.0+dfsg-1 [359 kB] Get:65 http://ftpmaster.internal/ubuntu jammy/main riscv64 fonts-dejavu-core all 2.37-2build1 [1041 kB] Get:66 http://ftpmaster.internal/ubuntu jammy/main riscv64 fontconfig-config all 2.13.1-4.2ubuntu4 [29.1 kB] Get:67 http://ftpmaster.internal/ubuntu jammy/main riscv64 libfontconfig1 riscv64 2.13.1-4.2ubuntu4 [116 kB] Get:68 http://ftpmaster.internal/ubuntu jammy/main riscv64 libnspr4 riscv64 2:4.32-1 [99.7 kB] Get:69 http://ftpmaster.internal/ubuntu jammy/main riscv64 libnss3 riscv64 2:3.68-1ubuntu1 [1161 kB] Get:70 http://ftpmaster.internal/ubuntu jammy/main riscv64 libasound2-data all 1.2.4-1.1ubuntu4 [18.8 kB] Get:71 http://ftpmaster.internal/ubuntu jammy/main riscv64 libasound2 riscv64 1.2.4-1.1ubuntu4 [329 kB] Get:72 http://ftpmaster.internal/ubuntu jammy/main riscv64 libgraphite2-3 riscv64 1.3.14-1build1 [71.5 kB] Get:73 http://ftpmaster.internal/ubuntu jammy/main riscv64 libharfbuzz0b riscv64 2.7.4-1ubuntu2 [369 kB] Get:74 http://ftpmaster.internal/ubuntu jammy/main riscv64 libpcsclite1 riscv64 1.9.4-1 [20.4 kB] Get:75 http://ftpmaster.internal/ubuntu jammy/main riscv64 openjdk-11-jre-headless riscv64 11.0.13+8-0ubuntu1 [34.1 MB] Get:76 http://ftpmaster.internal/ubuntu jammy/main riscv64 default-jre-headless riscv64 2:1.11-72build1 [3168 B] Get:77 http://ftpmaster.internal/ubuntu jammy/main riscv64 ca-certificates-java all 20190909 [12.1 kB] Get:78 http://ftpmaster.internal/ubuntu jammy/main riscv64 libdebhelper-perl all 13.3.4ubuntu3 [62.4 kB] Get:79 http://ftpmaster.internal/ubuntu jammy/main riscv64 libtool all 2.4.6-15build1 [164 kB] Get:80 http://ftpmaster.internal/ubuntu jammy/main riscv64 dh-autoreconf all 20 [16.1 kB] Get:81 http://ftpmaster.internal/ubuntu jammy/main riscv64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:82 http://ftpmaster.internal/ubuntu jammy/main riscv64 libsub-override-perl all 0.09-2 [9532 B] Get:83 http://ftpmaster.internal/ubuntu jammy/main riscv64 libfile-stripnondeterminism-perl all 1.12.0-2 [18.0 kB] Get:84 http://ftpmaster.internal/ubuntu jammy/main riscv64 dh-strip-nondeterminism all 1.12.0-2 [5208 B] Get:85 http://ftpmaster.internal/ubuntu jammy/main riscv64 libdw1 riscv64 0.185-2 [227 kB] Get:86 http://ftpmaster.internal/ubuntu jammy/main riscv64 debugedit riscv64 1:5.0-0ubuntu2 [50.5 kB] Get:87 http://ftpmaster.internal/ubuntu jammy/main riscv64 dwz riscv64 0.14-1build1 [105 kB] Get:88 http://ftpmaster.internal/ubuntu jammy/main riscv64 gettext riscv64 0.21-4ubuntu3 [769 kB] Get:89 http://ftpmaster.internal/ubuntu jammy/main riscv64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:90 http://ftpmaster.internal/ubuntu jammy/main riscv64 po-debconf all 1.0.21+nmu1 [233 kB] Get:91 http://ftpmaster.internal/ubuntu jammy/main riscv64 debhelper all 13.3.4ubuntu3 [921 kB] Get:92 http://ftpmaster.internal/ubuntu jammy/main riscv64 libglvnd0 riscv64 1.3.4-2 [81.9 kB] Get:93 http://ftpmaster.internal/ubuntu jammy/main riscv64 libglapi-mesa riscv64 21.2.2-1ubuntu1 [51.2 kB] Get:94 http://ftpmaster.internal/ubuntu jammy/main riscv64 libx11-xcb1 riscv64 2:1.7.2-2 [7432 B] Get:95 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxcb-dri2-0 riscv64 1.14-3ubuntu2 [6378 B] Get:96 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxcb-dri3-0 riscv64 1.14-3ubuntu2 [6084 B] Get:97 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxcb-glx0 riscv64 1.14-3ubuntu2 [21.1 kB] Get:98 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxcb-present0 riscv64 1.14-3ubuntu2 [5196 B] Get:99 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxcb-shm0 riscv64 1.14-3ubuntu2 [5196 B] Get:100 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxcb-sync1 riscv64 1.14-3ubuntu2 [8030 B] Get:101 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxcb-xfixes0 riscv64 1.14-3ubuntu2 [8646 B] Get:102 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxfixes3 riscv64 1:5.0.3-2build2 [9920 B] Get:103 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxshmfence1 riscv64 1.3-1build3 [4838 B] Get:104 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxxf86vm1 riscv64 1:1.1.4-1build2 [9824 B] Get:105 http://ftpmaster.internal/ubuntu jammy/main riscv64 libdrm-amdgpu1 riscv64 2.4.107-8ubuntu1 [17.2 kB] Get:106 http://ftpmaster.internal/ubuntu jammy/main riscv64 libdrm-nouveau2 riscv64 2.4.107-8ubuntu1 [15.3 kB] Get:107 http://ftpmaster.internal/ubuntu jammy/main riscv64 libdrm-radeon1 riscv64 2.4.107-8ubuntu1 [20.4 kB] Get:108 http://ftpmaster.internal/ubuntu jammy/main riscv64 libllvm12 riscv64 1:12.0.1-16 [19.4 MB] Get:109 http://ftpmaster.internal/ubuntu jammy/main riscv64 libsensors-config all 1:3.6.0-7build1 [5364 B] Get:110 http://ftpmaster.internal/ubuntu jammy/main riscv64 libsensors5 riscv64 1:3.6.0-7build1 [24.4 kB] Get:111 http://ftpmaster.internal/ubuntu jammy/main riscv64 libvulkan1 riscv64 1.2.189.0-2 [103 kB] Get:112 http://ftpmaster.internal/ubuntu jammy/main riscv64 libgl1-mesa-dri riscv64 21.2.2-1ubuntu1 [7010 kB] Get:113 http://ftpmaster.internal/ubuntu jammy/main riscv64 libglx-mesa0 riscv64 21.2.2-1ubuntu1 [149 kB] Get:114 http://ftpmaster.internal/ubuntu jammy/main riscv64 libglx0 riscv64 1.3.4-2 [26.1 kB] Get:115 http://ftpmaster.internal/ubuntu jammy/main riscv64 libgl1 riscv64 1.3.4-2 [127 kB] Get:116 http://ftpmaster.internal/ubuntu jammy/main riscv64 libgif7 riscv64 5.1.9-2build1 [31.8 kB] Get:117 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxi6 riscv64 2:1.8-1 [29.6 kB] Get:118 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxrender1 riscv64 1:0.9.10-1build3 [17.2 kB] Get:119 http://ftpmaster.internal/ubuntu jammy/main riscv64 x11-common all 1:7.7+23ubuntu1 [23.5 kB] Get:120 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxtst6 riscv64 2:1.2.3-1build3 [12.1 kB] Get:121 http://ftpmaster.internal/ubuntu jammy/main riscv64 openjdk-11-jre riscv64 11.0.13+8-0ubuntu1 [172 kB] Get:122 http://ftpmaster.internal/ubuntu jammy/main riscv64 default-jre riscv64 2:1.11-72build1 [900 B] Get:123 http://ftpmaster.internal/ubuntu jammy/main riscv64 openjdk-11-jdk-headless riscv64 11.0.13+8-0ubuntu1 [135 MB] Get:124 http://ftpmaster.internal/ubuntu jammy/main riscv64 default-jdk-headless riscv64 2:1.11-72build1 [946 B] Get:125 http://ftpmaster.internal/ubuntu jammy/main riscv64 openjdk-11-jdk riscv64 11.0.13+8-0ubuntu1 [13.5 kB] Get:126 http://ftpmaster.internal/ubuntu jammy/main riscv64 default-jdk riscv64 2:1.11-72build1 [908 B] Get:127 http://ftpmaster.internal/ubuntu jammy/main riscv64 fontconfig riscv64 2.13.1-4.2ubuntu4 [182 kB] Get:128 http://ftpmaster.internal/ubuntu jammy/universe riscv64 fonts-lmodern all 2.004.5-6.1 [4532 kB] Get:129 http://ftpmaster.internal/ubuntu jammy/main riscv64 libgfortran5 riscv64 11.2.0-10ubuntu1 [376 kB] Get:130 http://ftpmaster.internal/ubuntu jammy/main riscv64 libgfortran-11-dev riscv64 11.2.0-10ubuntu1 [1152 kB] Get:131 http://ftpmaster.internal/ubuntu jammy/main riscv64 gfortran-11 riscv64 11.2.0-10ubuntu1 [8481 kB] Get:132 http://ftpmaster.internal/ubuntu jammy/main riscv64 gfortran riscv64 4:11.2.0-1ubuntu1 [1178 B] Get:133 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 gir1.2-freedesktop riscv64 1.70.0-2ubuntu1 [22.3 kB] Get:134 http://ftpmaster.internal/ubuntu jammy/main riscv64 gir1.2-harfbuzz-0.0 riscv64 2.7.4-1ubuntu2 [31.6 kB] Get:135 http://ftpmaster.internal/ubuntu jammy/main riscv64 libthai-data all 0.1.28-4.1 [159 kB] Get:136 http://ftpmaster.internal/ubuntu jammy/main riscv64 libdatrie1 riscv64 0.2.13-1ubuntu3 [17.4 kB] Get:137 http://ftpmaster.internal/ubuntu jammy/main riscv64 libthai0 riscv64 0.1.28-4.1 [16.7 kB] Get:138 http://ftpmaster.internal/ubuntu jammy/main riscv64 libpango-1.0-0 riscv64 1.48.10+ds1-1 [179 kB] Get:139 http://ftpmaster.internal/ubuntu jammy/main riscv64 libpixman-1-0 riscv64 0.40.0-1build3 [164 kB] Get:140 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxcb-render0 riscv64 1.14-3ubuntu2 [13.7 kB] Get:141 http://ftpmaster.internal/ubuntu jammy/main riscv64 libcairo2 riscv64 1.16.0-5ubuntu2 [571 kB] Get:142 http://ftpmaster.internal/ubuntu jammy/main riscv64 libpangoft2-1.0-0 riscv64 1.48.10+ds1-1 [45.0 kB] Get:143 http://ftpmaster.internal/ubuntu jammy/main riscv64 libpangocairo-1.0-0 riscv64 1.48.10+ds1-1 [33.0 kB] Get:144 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxft2 riscv64 2.3.3-0ubuntu4 [36.7 kB] Get:145 http://ftpmaster.internal/ubuntu jammy/main riscv64 libpangoxft-1.0-0 riscv64 1.48.10+ds1-1 [26.2 kB] Get:146 http://ftpmaster.internal/ubuntu jammy/main riscv64 gir1.2-pango-1.0 riscv64 1.48.10+ds1-1 [40.1 kB] Get:147 http://ftpmaster.internal/ubuntu jammy/main riscv64 icu-devtools riscv64 67.1-7ubuntu1 [194 kB] Get:148 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libapache-pom-java all 18-1 [4720 B] Get:149 http://ftpmaster.internal/ubuntu jammy/main riscv64 libblas3 riscv64 3.9.0-3ubuntu3 [120 kB] Get:150 http://ftpmaster.internal/ubuntu jammy/main riscv64 libblas-dev riscv64 3.9.0-3ubuntu3 [273 kB] Get:151 http://ftpmaster.internal/ubuntu jammy/main riscv64 libbrotli-dev riscv64 1.0.9-2build4 [816 kB] Get:152 http://ftpmaster.internal/ubuntu jammy/main riscv64 libbz2-dev riscv64 1.0.8-4ubuntu4 [89.2 kB] Get:153 http://ftpmaster.internal/ubuntu jammy/main riscv64 libcairo-gobject2 riscv64 1.16.0-5ubuntu2 [18.3 kB] Get:154 http://ftpmaster.internal/ubuntu jammy/main riscv64 liblzo2-2 riscv64 2.10-2build2 [52.9 kB] Get:155 http://ftpmaster.internal/ubuntu jammy/main riscv64 libcairo-script-interpreter2 riscv64 1.16.0-5ubuntu2 [54.0 kB] Get:156 http://ftpmaster.internal/ubuntu jammy/main riscv64 libexpat1-dev riscv64 2.4.1-3 [336 kB] Get:157 http://ftpmaster.internal/ubuntu jammy/main riscv64 zlib1g-dev riscv64 1:1.2.11.dfsg-2ubuntu7 [240 kB] Get:158 http://ftpmaster.internal/ubuntu jammy/main riscv64 libpng-dev riscv64 1.6.37-3build4 [378 kB] Get:159 http://ftpmaster.internal/ubuntu jammy/main riscv64 libfreetype-dev riscv64 2.11.0+dfsg-1 [1169 kB] Get:160 http://ftpmaster.internal/ubuntu jammy/main riscv64 libfreetype6-dev riscv64 2.11.0+dfsg-1 [8340 B] Get:161 http://ftpmaster.internal/ubuntu jammy/main riscv64 uuid-dev riscv64 2.37.2-4ubuntu1 [52.0 kB] Get:162 http://ftpmaster.internal/ubuntu jammy/main riscv64 pkg-config riscv64 0.29.2-1ubuntu2 [46.1 kB] Get:163 http://ftpmaster.internal/ubuntu jammy/main riscv64 libfontconfig-dev riscv64 2.13.1-4.2ubuntu4 [344 kB] Get:164 http://ftpmaster.internal/ubuntu jammy/main riscv64 libfontconfig1-dev riscv64 2.13.1-4.2ubuntu4 [1840 B] Get:165 http://ftpmaster.internal/ubuntu jammy/main riscv64 xorg-sgml-doctools all 1:1.11-1.1 [10.9 kB] Get:166 http://ftpmaster.internal/ubuntu jammy/main riscv64 x11proto-dev all 2021.5-1 [604 kB] Get:167 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxau-dev riscv64 1:1.0.9-1build4 [12.8 kB] Get:168 http://ftpmaster.internal/ubuntu jammy/main riscv64 x11proto-core-dev all 2021.5-1 [2438 B] Get:169 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxdmcp-dev riscv64 1:1.1.3-0ubuntu4 [35.5 kB] Get:170 http://ftpmaster.internal/ubuntu jammy/main riscv64 xtrans-dev all 1.4.0-1 [68.9 kB] Get:171 http://ftpmaster.internal/ubuntu jammy/main riscv64 libpthread-stubs0-dev riscv64 0.4-1build1 [5442 B] Get:172 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxcb1-dev riscv64 1.14-3ubuntu2 [163 kB] Get:173 http://ftpmaster.internal/ubuntu jammy/main riscv64 libx11-dev riscv64 2:1.7.2-2 [1262 kB] Get:174 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxrender-dev riscv64 1:0.9.10-1build3 [49.0 kB] Get:175 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxext-dev riscv64 2:1.3.4-0ubuntu4 [127 kB] Get:176 http://ftpmaster.internal/ubuntu jammy/main riscv64 libice6 riscv64 2:1.0.10-1build1 [37.3 kB] Get:177 http://ftpmaster.internal/ubuntu jammy/main riscv64 libsm6 riscv64 2:1.2.3-1build1 [15.4 kB] Get:178 http://ftpmaster.internal/ubuntu jammy/main riscv64 libice-dev riscv64 2:1.0.10-1build1 [111 kB] Get:179 http://ftpmaster.internal/ubuntu jammy/main riscv64 libsm-dev riscv64 2:1.2.3-1build1 [37.0 kB] Get:180 http://ftpmaster.internal/ubuntu jammy/main riscv64 libpixman-1-dev riscv64 0.40.0-1build3 [631 kB] Get:181 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxcb-render0-dev riscv64 1.14-3ubuntu2 [34.5 kB] Get:182 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxcb-shm0-dev riscv64 1.14-3ubuntu2 [9440 B] Get:183 http://ftpmaster.internal/ubuntu jammy/main riscv64 libffi-dev riscv64 3.4.2-1ubuntu5 [86.7 kB] Get:184 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libglib2.0-bin riscv64 2.70.1-1 [73.6 kB] Get:185 http://ftpmaster.internal/ubuntu jammy/main riscv64 python3-lib2to3 all 3.9.7-1 [77.9 kB] Get:186 http://ftpmaster.internal/ubuntu jammy/main riscv64 python3-distutils all 3.9.7-1 [144 kB] Get:187 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libglib2.0-dev-bin riscv64 2.70.1-1 [113 kB] Get:188 http://ftpmaster.internal/ubuntu jammy/main riscv64 libblkid-dev riscv64 2.37.2-4ubuntu1 [448 kB] Get:189 http://ftpmaster.internal/ubuntu jammy/main riscv64 libsepol1-dev riscv64 3.1-1ubuntu2 [996 kB] Get:190 http://ftpmaster.internal/ubuntu jammy/main riscv64 libpcre2-16-0 riscv64 10.37-0ubuntu2 [119 kB] Get:191 http://ftpmaster.internal/ubuntu jammy/main riscv64 libpcre2-32-0 riscv64 10.37-0ubuntu2 [110 kB] Get:192 http://ftpmaster.internal/ubuntu jammy/main riscv64 libpcre2-posix3 riscv64 10.37-0ubuntu2 [5452 B] Get:193 http://ftpmaster.internal/ubuntu jammy/main riscv64 libpcre2-dev riscv64 10.37-0ubuntu2 [1145 kB] Get:194 http://ftpmaster.internal/ubuntu jammy/main riscv64 libselinux1-dev riscv64 3.1-3build3 [271 kB] Get:195 http://ftpmaster.internal/ubuntu jammy/main riscv64 libmount-dev riscv64 2.37.2-4ubuntu1 [14.6 kB] Get:196 http://ftpmaster.internal/ubuntu jammy/main riscv64 libpcre16-3 riscv64 2:8.39-13build4 [87.2 kB] Get:197 http://ftpmaster.internal/ubuntu jammy/main riscv64 libpcre32-3 riscv64 2:8.39-13build4 [80.9 kB] Get:198 http://ftpmaster.internal/ubuntu jammy/main riscv64 libpcrecpp0v5 riscv64 2:8.39-13build4 [15.8 kB] Get:199 http://ftpmaster.internal/ubuntu jammy/main riscv64 libpcre3-dev riscv64 2:8.39-13build4 [899 kB] Get:200 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libglib2.0-dev riscv64 2.70.1-1 [4057 kB] Get:201 http://ftpmaster.internal/ubuntu jammy/main riscv64 libcairo2-dev riscv64 1.16.0-5ubuntu2 [1880 kB] Get:202 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libcommons-parent-java all 43-1 [10.8 kB] Get:203 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libcommons-logging-java all 1.2-2 [60.3 kB] Get:204 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libsasl2-modules-db riscv64 2.1.27+dfsg-2.3 [14.9 kB] Get:205 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libsasl2-2 riscv64 2.1.27+dfsg-2.3 [49.1 kB] Get:206 http://ftpmaster.internal/ubuntu jammy/main riscv64 libldap-2.5-0 riscv64 2.5.6+dfsg-1~exp1ubuntu1 [165 kB] Get:207 http://ftpmaster.internal/ubuntu jammy/main riscv64 libnghttp2-14 riscv64 1.43.0-1build1 [73.2 kB] Get:208 http://ftpmaster.internal/ubuntu jammy/main riscv64 librtmp1 riscv64 2.4+20151223.gitfa8646d.1-2build3 [54.7 kB] Get:209 http://ftpmaster.internal/ubuntu jammy/main riscv64 libssh-4 riscv64 0.9.6-1 [163 kB] Get:210 http://ftpmaster.internal/ubuntu jammy/main riscv64 libcurl4 riscv64 7.74.0-1.3ubuntu2 [245 kB] Get:211 http://ftpmaster.internal/ubuntu jammy/main riscv64 libcurl4-openssl-dev riscv64 7.74.0-1.3ubuntu2 [817 kB] Get:212 http://ftpmaster.internal/ubuntu jammy/main riscv64 libdatrie-dev riscv64 0.2.13-1ubuntu3 [39.8 kB] Get:213 http://ftpmaster.internal/ubuntu jammy/main riscv64 libdeflate0 riscv64 1.7-2ubuntu2 [51.0 kB] Get:214 http://ftpmaster.internal/ubuntu jammy/main riscv64 libdeflate-dev riscv64 1.7-2ubuntu2 [91.5 kB] Get:215 http://ftpmaster.internal/ubuntu jammy/main riscv64 libfontenc1 riscv64 1:1.1.4-1build2 [13.2 kB] Get:216 http://ftpmaster.internal/ubuntu jammy/main riscv64 libfribidi-dev riscv64 1.0.8-2ubuntu2 [71.6 kB] Get:217 http://ftpmaster.internal/ubuntu jammy/main riscv64 libgraphite2-dev riscv64 1.3.14-1build1 [14.7 kB] Get:218 http://ftpmaster.internal/ubuntu jammy/main riscv64 libharfbuzz-icu0 riscv64 2.7.4-1ubuntu2 [5230 B] Get:219 http://ftpmaster.internal/ubuntu jammy/main riscv64 libharfbuzz-gobject0 riscv64 2.7.4-1ubuntu2 [22.2 kB] Get:220 http://ftpmaster.internal/ubuntu jammy/main riscv64 libicu-dev riscv64 67.1-7ubuntu1 [15.5 MB] Get:221 http://ftpmaster.internal/ubuntu jammy/main riscv64 libharfbuzz-dev riscv64 2.7.4-1ubuntu2 [2062 kB] Get:222 http://ftpmaster.internal/ubuntu jammy/main riscv64 libjpeg-turbo8-dev riscv64 2.0.6-0ubuntu3 [451 kB] Get:223 http://ftpmaster.internal/ubuntu jammy/main riscv64 libjpeg8-dev riscv64 8c-2ubuntu8 [1692 B] Get:224 http://ftpmaster.internal/ubuntu jammy/main riscv64 libjpeg-dev riscv64 8c-2ubuntu8 [1688 B] Get:225 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libjs-jquery all 3.5.1+dfsg+~3.5.5-8 [321 kB] Get:226 http://ftpmaster.internal/ubuntu jammy/main riscv64 libkpathsea6 riscv64 2021.20210626.59705-1 [56.4 kB] Get:227 http://ftpmaster.internal/ubuntu jammy/main riscv64 liblapack3 riscv64 3.9.0-3ubuntu3 [1864 kB] Get:228 http://ftpmaster.internal/ubuntu jammy/main riscv64 liblapack-dev riscv64 3.9.0-3ubuntu3 [9925 kB] Get:229 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libmime-charset-perl all 1.012.2-1 [30.9 kB] Get:230 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libncurses-dev riscv64 6.2+20210905-1 [892 kB] Get:231 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libncurses5-dev riscv64 6.2+20210905-1 [794 B] Get:232 http://ftpmaster.internal/ubuntu jammy/main riscv64 libthai-dev riscv64 0.1.28-4.1 [43.2 kB] Get:233 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxft-dev riscv64 2.3.3-0ubuntu4 [109 kB] Get:234 http://ftpmaster.internal/ubuntu jammy/main riscv64 pango1.0-tools riscv64 1.48.10+ds1-1 [37.3 kB] Get:235 http://ftpmaster.internal/ubuntu jammy/main riscv64 libpango1.0-dev riscv64 1.48.10+ds1-1 [143 kB] Get:236 http://ftpmaster.internal/ubuntu jammy/main riscv64 libpaper1 riscv64 1.1.28build1 [12.8 kB] Get:237 http://ftpmaster.internal/ubuntu jammy/main riscv64 libpaper-utils riscv64 1.1.28build1 [8184 B] Get:238 http://ftpmaster.internal/ubuntu jammy/main riscv64 libptexenc1 riscv64 2021.20210626.59705-1 [37.0 kB] Get:239 http://ftpmaster.internal/ubuntu jammy/main riscv64 libreadline-dev riscv64 8.1-2build1 [362 kB] Get:240 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libsombok3 riscv64 2.4.0-2 [24.2 kB] Get:241 http://ftpmaster.internal/ubuntu jammy/main riscv64 libsynctex2 riscv64 2021.20210626.59705-1 [49.9 kB] Get:242 http://ftpmaster.internal/ubuntu jammy/main riscv64 libtcl8.6 riscv64 8.6.12+dfsg-1 [937 kB] Get:243 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libteckit0 riscv64 2.5.10+ds1-3 [264 kB] Get:244 http://ftpmaster.internal/ubuntu jammy/main riscv64 libtexlua53 riscv64 2021.20210626.59705-1 [103 kB] Get:245 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libtext-unidecode-perl all 1.30-1 [99.0 kB] Get:246 http://ftpmaster.internal/ubuntu jammy/main riscv64 libjbig0 riscv64 2.1-3.1build2 [27.4 kB] Get:247 http://ftpmaster.internal/ubuntu jammy/main riscv64 libjbig-dev riscv64 2.1-3.1build2 [55.2 kB] Get:248 http://ftpmaster.internal/ubuntu jammy/main riscv64 liblzma-dev riscv64 5.2.5-2build1 [279 kB] Get:249 http://ftpmaster.internal/ubuntu jammy/main riscv64 libwebp6 riscv64 0.6.1-2.1build1 [160 kB] Get:250 http://ftpmaster.internal/ubuntu jammy/main riscv64 libtiff5 riscv64 4.3.0-2 [165 kB] Get:251 http://ftpmaster.internal/ubuntu jammy/main riscv64 libtiffxx5 riscv64 4.3.0-2 [5556 B] Get:252 http://ftpmaster.internal/ubuntu jammy/main riscv64 libtiff-dev riscv64 4.3.0-2 [603 kB] Get:253 http://ftpmaster.internal/ubuntu jammy/main riscv64 libtiff5-dev riscv64 4.3.0-2 [2088 B] Get:254 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxss1 riscv64 1:1.2.3-1build1 [7654 B] Get:255 http://ftpmaster.internal/ubuntu jammy/main riscv64 libtk8.6 riscv64 8.6.12-1 [701 kB] Get:256 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libunicode-linebreak-perl riscv64 0.0.20190101-1build2 [93.1 kB] Get:257 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxt6 riscv64 1:1.2.0-1build1 [149 kB] Get:258 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxmu6 riscv64 2:1.1.3-0ubuntu2 [43.6 kB] Get:259 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxpm4 riscv64 1:3.5.12-1build1 [33.4 kB] Get:260 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxaw7 riscv64 2:1.0.13-1.1build1 [163 kB] Get:261 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxfont2 riscv64 1:2.0.4-1build3 [88.5 kB] Get:262 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxkbfile1 riscv64 1:1.1.0-1build2 [65.2 kB] Get:263 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxml-namespacesupport-perl all 1.12-1.1 [13.2 kB] Get:264 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxml-sax-base-perl all 1.09-1.1 [19.0 kB] Get:265 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxml-sax-perl all 1.02+dfsg-3 [57.0 kB] Get:266 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxml-libxml-perl riscv64 2.0134+dfsg-2build2 [315 kB] Get:267 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxss-dev riscv64 1:1.2.3-1build1 [15.5 kB] Get:268 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxt-dev riscv64 1:1.2.0-1build1 [633 kB] Get:269 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libzzip-0-13 riscv64 0.13.72+dfsg.1-1.1 [23.7 kB] Get:270 http://ftpmaster.internal/ubuntu jammy/main riscv64 xfonts-encodings all 1:1.0.5-0ubuntu1 [573 kB] Get:271 http://ftpmaster.internal/ubuntu jammy/main riscv64 xfonts-utils riscv64 1:7.7+6build1 [92.4 kB] Get:272 http://ftpmaster.internal/ubuntu jammy/universe riscv64 lmodern all 2.004.5-6.1 [9471 kB] Get:273 http://ftpmaster.internal/ubuntu jammy/universe riscv64 mpack riscv64 1.6-18 [37.3 kB] Get:274 http://ftpmaster.internal/ubuntu jammy/universe riscv64 preview-latex-style all 12.2-1ubuntu1 [185 kB] Get:275 http://ftpmaster.internal/ubuntu jammy/main riscv64 t1utils riscv64 1.41-4build1 [55.6 kB] Get:276 http://ftpmaster.internal/ubuntu jammy/main riscv64 tcl8.6 riscv64 8.6.12+dfsg-1 [14.8 kB] Get:277 http://ftpmaster.internal/ubuntu jammy/main riscv64 tcl8.6-dev riscv64 8.6.12+dfsg-1 [2469 kB] Get:278 http://ftpmaster.internal/ubuntu jammy/universe riscv64 texinfo riscv64 6.7.0.dfsg.2-6build1 [1393 kB] Get:279 http://ftpmaster.internal/ubuntu jammy/universe riscv64 texlive-binaries riscv64 2021.20210626.59705-1 [8030 kB] Get:280 http://ftpmaster.internal/ubuntu jammy/main riscv64 xdg-utils all 1.1.3-2ubuntu2 [61.5 kB] Get:281 http://ftpmaster.internal/ubuntu jammy-proposed/universe riscv64 texlive-base all 2021.20210921-1 [20.9 MB] Get:282 http://ftpmaster.internal/ubuntu jammy-proposed/universe riscv64 texlive-latex-base all 2021.20210921-1 [1119 kB] Get:283 http://ftpmaster.internal/ubuntu jammy-proposed/universe riscv64 texlive-luatex all 2021.20210921-1 [16.6 MB] Get:284 http://ftpmaster.internal/ubuntu jammy-proposed/universe riscv64 texlive-plain-generic all 2021.20210921-1 [27.3 MB] Get:285 http://ftpmaster.internal/ubuntu jammy-proposed/universe riscv64 texlive-extra-utils all 2021.20210921-1 [52.0 MB] Get:286 http://ftpmaster.internal/ubuntu jammy-proposed/universe riscv64 texlive-fonts-extra all 2021.20210921-1 [482 MB] Get:287 http://ftpmaster.internal/ubuntu jammy-proposed/universe riscv64 texlive-fonts-recommended all 2021.20210921-1 [4972 kB] Get:288 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libfontbox-java all 1:1.8.16-2 [207 kB] Get:289 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libpdfbox-java all 1:1.8.16-2 [5199 kB] Get:290 http://ftpmaster.internal/ubuntu jammy-proposed/universe riscv64 texlive-latex-recommended all 2021.20210921-1 [14.4 MB] Get:291 http://ftpmaster.internal/ubuntu jammy-proposed/universe riscv64 texlive-pictures all 2021.20210921-1 [8679 kB] Get:292 http://ftpmaster.internal/ubuntu jammy-proposed/universe riscv64 texlive-latex-extra all 2021.20210921-1 [14.1 MB] Get:293 http://ftpmaster.internal/ubuntu jammy/main riscv64 tk8.6 riscv64 8.6.12-1 [12.5 kB] Get:294 http://ftpmaster.internal/ubuntu jammy/main riscv64 tk8.6-dev riscv64 8.6.12-1 [1679 kB] Get:295 http://ftpmaster.internal/ubuntu jammy/main riscv64 x11-xkb-utils riscv64 7.7+5build3 [163 kB] Get:296 http://ftpmaster.internal/ubuntu jammy/main riscv64 xfonts-base all 1:1.0.5 [5896 kB] Get:297 http://ftpmaster.internal/ubuntu jammy/main riscv64 xserver-common all 2:1.20.13-1ubuntu1 [27.5 kB] Get:298 http://ftpmaster.internal/ubuntu jammy/universe riscv64 xvfb riscv64 2:1.20.13-1ubuntu1 [792 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 979 MB in 3min 1s (5403 kB/s) Selecting previously unselected package libpython3.9-minimal:riscv64. (Reading database ... 13169 files and directories currently installed.) Preparing to unpack .../libpython3.9-minimal_3.9.8-1_riscv64.deb ... Unpacking libpython3.9-minimal:riscv64 (3.9.8-1) ... Selecting previously unselected package libexpat1:riscv64. Preparing to unpack .../libexpat1_2.4.1-3_riscv64.deb ... Unpacking libexpat1:riscv64 (2.4.1-3) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../python3.9-minimal_3.9.8-1_riscv64.deb ... Unpacking python3.9-minimal (3.9.8-1) ... Setting up libpython3.9-minimal:riscv64 (3.9.8-1) ... Setting up libexpat1:riscv64 (2.4.1-3) ... Setting up python3.9-minimal (3.9.8-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 13462 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.7-4_riscv64.deb ... Unpacking python3-minimal (3.9.7-4) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package libmpdec3:riscv64. Preparing to unpack .../2-libmpdec3_2.5.1-2build1_riscv64.deb ... Unpacking libmpdec3:riscv64 (2.5.1-2build1) ... Selecting previously unselected package libpython3.9-stdlib:riscv64. Preparing to unpack .../3-libpython3.9-stdlib_3.9.8-1_riscv64.deb ... Unpacking libpython3.9-stdlib:riscv64 (3.9.8-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../4-python3.9_3.9.8-1_riscv64.deb ... Unpacking python3.9 (3.9.8-1) ... Selecting previously unselected package libpython3-stdlib:riscv64. Preparing to unpack .../5-libpython3-stdlib_3.9.7-4_riscv64.deb ... Unpacking libpython3-stdlib:riscv64 (3.9.7-4) ... Setting up python3-minimal (3.9.7-4) ... Selecting previously unselected package python3. (Reading database ... 13859 files and directories currently installed.) Preparing to unpack .../000-python3_3.9.7-4_riscv64.deb ... Unpacking python3 (3.9.7-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../001-bsdextrautils_2.37.2-4ubuntu1_riscv64.deb ... Unpacking bsdextrautils (2.37.2-4ubuntu1) ... Selecting previously unselected package libuchardet0:riscv64. Preparing to unpack .../002-libuchardet0_0.0.7-1build1_riscv64.deb ... Unpacking libuchardet0:riscv64 (0.0.7-1build1) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-7_riscv64.deb ... Unpacking groff-base (1.22.4-7) ... Selecting previously unselected package libpipeline1:riscv64. Preparing to unpack .../004-libpipeline1_1.5.4-1_riscv64.deb ... Unpacking libpipeline1:riscv64 (1.5.4-1) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.9.4-2build1_riscv64.deb ... Unpacking man-db (2.9.4-2build1) ... Selecting previously unselected package ucf. Preparing to unpack .../006-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package tex-common. Preparing to unpack .../007-tex-common_6.17_all.deb ... Unpacking tex-common (6.17) ... Selecting previously unselected package libglib2.0-0:riscv64. Preparing to unpack .../008-libglib2.0-0_2.70.1-1_riscv64.deb ... Unpacking libglib2.0-0:riscv64 (2.70.1-1) ... Selecting previously unselected package libgirepository-1.0-1:riscv64. Preparing to unpack .../009-libgirepository-1.0-1_1.70.0-2ubuntu1_riscv64.deb ... Unpacking libgirepository-1.0-1:riscv64 (1.70.0-2ubuntu1) ... Selecting previously unselected package gir1.2-glib-2.0:riscv64. Preparing to unpack .../010-gir1.2-glib-2.0_1.70.0-2ubuntu1_riscv64.deb ... Unpacking gir1.2-glib-2.0:riscv64 (1.70.0-2ubuntu1) ... Selecting previously unselected package libmd0:riscv64. Preparing to unpack .../011-libmd0_1.0.4-1_riscv64.deb ... Unpacking libmd0:riscv64 (1.0.4-1) ... Selecting previously unselected package libbsd0:riscv64. Preparing to unpack .../012-libbsd0_0.11.3-1ubuntu3_riscv64.deb ... Unpacking libbsd0:riscv64 (0.11.3-1ubuntu3) ... Selecting previously unselected package libdbus-1-3:riscv64. Preparing to unpack .../013-libdbus-1-3_1.12.20-2ubuntu2_riscv64.deb ... Unpacking libdbus-1-3:riscv64 (1.12.20-2ubuntu2) ... Selecting previously unselected package libelf1:riscv64. Preparing to unpack .../014-libelf1_0.185-2_riscv64.deb ... Unpacking libelf1:riscv64 (0.185-2) ... Selecting previously unselected package libfribidi0:riscv64. Preparing to unpack .../015-libfribidi0_1.0.8-2ubuntu2_riscv64.deb ... Unpacking libfribidi0:riscv64 (1.0.8-2ubuntu2) ... Selecting previously unselected package libglib2.0-data. Preparing to unpack .../016-libglib2.0-data_2.70.1-1_all.deb ... Unpacking libglib2.0-data (2.70.1-1) ... Selecting previously unselected package libicu67:riscv64. Preparing to unpack .../017-libicu67_67.1-7ubuntu1_riscv64.deb ... Unpacking libicu67:riscv64 (67.1-7ubuntu1) ... Selecting previously unselected package libxml2:riscv64. Preparing to unpack .../018-libxml2_2.9.12+dfsg-5_riscv64.deb ... Unpacking libxml2:riscv64 (2.9.12+dfsg-5) ... Selecting previously unselected package xkb-data. Preparing to unpack .../019-xkb-data_2.33-1_all.deb ... Unpacking xkb-data (2.33-1) ... Selecting previously unselected package bash-completion. Preparing to unpack .../020-bash-completion_1%3a2.11-4ubuntu1_all.deb ... Unpacking bash-completion (1:2.11-4ubuntu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../021-libmagic-mgc_1%3a5.39-3build1_riscv64.deb ... Unpacking libmagic-mgc (1:5.39-3build1) ... Selecting previously unselected package libmagic1:riscv64. Preparing to unpack .../022-libmagic1_1%3a5.39-3build1_riscv64.deb ... Unpacking libmagic1:riscv64 (1:5.39-3build1) ... Selecting previously unselected package file. Preparing to unpack .../023-file_1%3a5.39-3build1_riscv64.deb ... Unpacking file (1:5.39-3build1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../024-gettext-base_0.21-4ubuntu3_riscv64.deb ... Unpacking gettext-base (0.21-4ubuntu3) ... Selecting previously unselected package libdrm-common. Preparing to unpack .../025-libdrm-common_2.4.107-8ubuntu1_all.deb ... Unpacking libdrm-common (2.4.107-8ubuntu1) ... Selecting previously unselected package libdrm2:riscv64. Preparing to unpack .../026-libdrm2_2.4.107-8ubuntu1_riscv64.deb ... Unpacking libdrm2:riscv64 (2.4.107-8ubuntu1) ... Selecting previously unselected package libedit2:riscv64. Preparing to unpack .../027-libedit2_3.1-20210910-1_riscv64.deb ... Unpacking libedit2:riscv64 (3.1-20210910-1) ... Selecting previously unselected package libpsl5:riscv64. Preparing to unpack .../028-libpsl5_0.21.0-1.2build1_riscv64.deb ... Unpacking libpsl5:riscv64 (0.21.0-1.2build1) ... Selecting previously unselected package libxau6:riscv64. Preparing to unpack .../029-libxau6_1%3a1.0.9-1build4_riscv64.deb ... Unpacking libxau6:riscv64 (1:1.0.9-1build4) ... Selecting previously unselected package libxdmcp6:riscv64. Preparing to unpack .../030-libxdmcp6_1%3a1.1.3-0ubuntu4_riscv64.deb ... Unpacking libxdmcp6:riscv64 (1:1.1.3-0ubuntu4) ... Selecting previously unselected package libxcb1:riscv64. Preparing to unpack .../031-libxcb1_1.14-3ubuntu2_riscv64.deb ... Unpacking libxcb1:riscv64 (1.14-3ubuntu2) ... Selecting previously unselected package libx11-data. Preparing to unpack .../032-libx11-data_2%3a1.7.2-2_all.deb ... Unpacking libx11-data (2:1.7.2-2) ... Selecting previously unselected package libx11-6:riscv64. Preparing to unpack .../033-libx11-6_2%3a1.7.2-2_riscv64.deb ... Unpacking libx11-6:riscv64 (2:1.7.2-2) ... Selecting previously unselected package libxext6:riscv64. Preparing to unpack .../034-libxext6_2%3a1.3.4-0ubuntu4_riscv64.deb ... Unpacking libxext6:riscv64 (2:1.3.4-0ubuntu4) ... Selecting previously unselected package libxmuu1:riscv64. Preparing to unpack .../035-libxmuu1_2%3a1.1.3-0ubuntu2_riscv64.deb ... Unpacking libxmuu1:riscv64 (2:1.1.3-0ubuntu2) ... Selecting previously unselected package xauth. Preparing to unpack .../036-xauth_1%3a1.1-1build1_riscv64.deb ... Unpacking xauth (1:1.1-1build1) ... Selecting previously unselected package libsigsegv2:riscv64. Preparing to unpack .../037-libsigsegv2_2.13-1ubuntu2_riscv64.deb ... Unpacking libsigsegv2:riscv64 (2.13-1ubuntu2) ... Selecting previously unselected package m4. Preparing to unpack .../038-m4_1.4.18-5ubuntu1_riscv64.deb ... Unpacking m4 (1.4.18-5ubuntu1) ... Selecting previously unselected package autoconf. Preparing to unpack .../039-autoconf_2.71-2_all.deb ... Unpacking autoconf (2.71-2) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../040-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../041-automake_1%3a1.16.5-1ubuntu1_all.deb ... Unpacking automake (1:1.16.5-1ubuntu1) ... Selecting previously unselected package autopoint. Preparing to unpack .../042-autopoint_0.21-4ubuntu3_all.deb ... Unpacking autopoint (0.21-4ubuntu3) ... Selecting previously unselected package bison. Preparing to unpack .../043-bison_2%3a3.8.2+dfsg-1_riscv64.deb ... Unpacking bison (2:3.8.2+dfsg-1) ... Selecting previously unselected package java-common. Preparing to unpack .../044-java-common_0.72build1_all.deb ... Unpacking java-common (0.72build1) ... Selecting previously unselected package libavahi-common-data:riscv64. Preparing to unpack .../045-libavahi-common-data_0.8-5ubuntu4_riscv64.deb ... Unpacking libavahi-common-data:riscv64 (0.8-5ubuntu4) ... Selecting previously unselected package libavahi-common3:riscv64. Preparing to unpack .../046-libavahi-common3_0.8-5ubuntu4_riscv64.deb ... Unpacking libavahi-common3:riscv64 (0.8-5ubuntu4) ... Selecting previously unselected package libavahi-client3:riscv64. Preparing to unpack .../047-libavahi-client3_0.8-5ubuntu4_riscv64.deb ... Unpacking libavahi-client3:riscv64 (0.8-5ubuntu4) ... Selecting previously unselected package libcups2:riscv64. Preparing to unpack .../048-libcups2_2.3.3op2-7ubuntu2_riscv64.deb ... Unpacking libcups2:riscv64 (2.3.3op2-7ubuntu2) ... Selecting previously unselected package liblcms2-2:riscv64. Preparing to unpack .../049-liblcms2-2_2.12~rc1-2build1_riscv64.deb ... Unpacking liblcms2-2:riscv64 (2.12~rc1-2build1) ... Selecting previously unselected package libjpeg-turbo8:riscv64. Preparing to unpack .../050-libjpeg-turbo8_2.0.6-0ubuntu3_riscv64.deb ... Unpacking libjpeg-turbo8:riscv64 (2.0.6-0ubuntu3) ... Selecting previously unselected package libjpeg8:riscv64. Preparing to unpack .../051-libjpeg8_8c-2ubuntu8_riscv64.deb ... Unpacking libjpeg8:riscv64 (8c-2ubuntu8) ... Selecting previously unselected package libbrotli1:riscv64. Preparing to unpack .../052-libbrotli1_1.0.9-2build4_riscv64.deb ... Unpacking libbrotli1:riscv64 (1.0.9-2build4) ... Selecting previously unselected package libfreetype6:riscv64. Preparing to unpack .../053-libfreetype6_2.11.0+dfsg-1_riscv64.deb ... Unpacking libfreetype6:riscv64 (2.11.0+dfsg-1) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../054-fonts-dejavu-core_2.37-2build1_all.deb ... Unpacking fonts-dejavu-core (2.37-2build1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../055-fontconfig-config_2.13.1-4.2ubuntu4_all.deb ... Unpacking fontconfig-config (2.13.1-4.2ubuntu4) ... Selecting previously unselected package libfontconfig1:riscv64. Preparing to unpack .../056-libfontconfig1_2.13.1-4.2ubuntu4_riscv64.deb ... Unpacking libfontconfig1:riscv64 (2.13.1-4.2ubuntu4) ... Selecting previously unselected package libnspr4:riscv64. Preparing to unpack .../057-libnspr4_2%3a4.32-1_riscv64.deb ... Unpacking libnspr4:riscv64 (2:4.32-1) ... Selecting previously unselected package libnss3:riscv64. Preparing to unpack .../058-libnss3_2%3a3.68-1ubuntu1_riscv64.deb ... Unpacking libnss3:riscv64 (2:3.68-1ubuntu1) ... Selecting previously unselected package libasound2-data. Preparing to unpack .../059-libasound2-data_1.2.4-1.1ubuntu4_all.deb ... Unpacking libasound2-data (1.2.4-1.1ubuntu4) ... Selecting previously unselected package libasound2:riscv64. Preparing to unpack .../060-libasound2_1.2.4-1.1ubuntu4_riscv64.deb ... Unpacking libasound2:riscv64 (1.2.4-1.1ubuntu4) ... Selecting previously unselected package libgraphite2-3:riscv64. Preparing to unpack .../061-libgraphite2-3_1.3.14-1build1_riscv64.deb ... Unpacking libgraphite2-3:riscv64 (1.3.14-1build1) ... Selecting previously unselected package libharfbuzz0b:riscv64. Preparing to unpack .../062-libharfbuzz0b_2.7.4-1ubuntu2_riscv64.deb ... Unpacking libharfbuzz0b:riscv64 (2.7.4-1ubuntu2) ... Selecting previously unselected package libpcsclite1:riscv64. Preparing to unpack .../063-libpcsclite1_1.9.4-1_riscv64.deb ... Unpacking libpcsclite1:riscv64 (1.9.4-1) ... Selecting previously unselected package openjdk-11-jre-headless:riscv64. Preparing to unpack .../064-openjdk-11-jre-headless_11.0.13+8-0ubuntu1_riscv64.deb ... Unpacking openjdk-11-jre-headless:riscv64 (11.0.13+8-0ubuntu1) ... Selecting previously unselected package default-jre-headless. Preparing to unpack .../065-default-jre-headless_2%3a1.11-72build1_riscv64.deb ... Unpacking default-jre-headless (2:1.11-72build1) ... Selecting previously unselected package ca-certificates-java. Preparing to unpack .../066-ca-certificates-java_20190909_all.deb ... Unpacking ca-certificates-java (20190909) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../067-libdebhelper-perl_13.3.4ubuntu3_all.deb ... Unpacking libdebhelper-perl (13.3.4ubuntu3) ... Selecting previously unselected package libtool. Preparing to unpack .../068-libtool_2.4.6-15build1_all.deb ... Unpacking libtool (2.4.6-15build1) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../069-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../070-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../071-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../072-libfile-stripnondeterminism-perl_1.12.0-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../073-dh-strip-nondeterminism_1.12.0-2_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-2) ... Selecting previously unselected package libdw1:riscv64. Preparing to unpack .../074-libdw1_0.185-2_riscv64.deb ... Unpacking libdw1:riscv64 (0.185-2) ... Selecting previously unselected package debugedit. Preparing to unpack .../075-debugedit_1%3a5.0-0ubuntu2_riscv64.deb ... Unpacking debugedit (1:5.0-0ubuntu2) ... Selecting previously unselected package dwz. Preparing to unpack .../076-dwz_0.14-1build1_riscv64.deb ... Unpacking dwz (0.14-1build1) ... Selecting previously unselected package gettext. Preparing to unpack .../077-gettext_0.21-4ubuntu3_riscv64.deb ... Unpacking gettext (0.21-4ubuntu3) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../078-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../079-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../080-debhelper_13.3.4ubuntu3_all.deb ... Unpacking debhelper (13.3.4ubuntu3) ... Selecting previously unselected package libglvnd0:riscv64. Preparing to unpack .../081-libglvnd0_1.3.4-2_riscv64.deb ... Unpacking libglvnd0:riscv64 (1.3.4-2) ... Selecting previously unselected package libglapi-mesa:riscv64. Preparing to unpack .../082-libglapi-mesa_21.2.2-1ubuntu1_riscv64.deb ... Unpacking libglapi-mesa:riscv64 (21.2.2-1ubuntu1) ... Selecting previously unselected package libx11-xcb1:riscv64. Preparing to unpack .../083-libx11-xcb1_2%3a1.7.2-2_riscv64.deb ... Unpacking libx11-xcb1:riscv64 (2:1.7.2-2) ... Selecting previously unselected package libxcb-dri2-0:riscv64. Preparing to unpack .../084-libxcb-dri2-0_1.14-3ubuntu2_riscv64.deb ... Unpacking libxcb-dri2-0:riscv64 (1.14-3ubuntu2) ... Selecting previously unselected package libxcb-dri3-0:riscv64. Preparing to unpack .../085-libxcb-dri3-0_1.14-3ubuntu2_riscv64.deb ... Unpacking libxcb-dri3-0:riscv64 (1.14-3ubuntu2) ... Selecting previously unselected package libxcb-glx0:riscv64. Preparing to unpack .../086-libxcb-glx0_1.14-3ubuntu2_riscv64.deb ... Unpacking libxcb-glx0:riscv64 (1.14-3ubuntu2) ... Selecting previously unselected package libxcb-present0:riscv64. Preparing to unpack .../087-libxcb-present0_1.14-3ubuntu2_riscv64.deb ... Unpacking libxcb-present0:riscv64 (1.14-3ubuntu2) ... Selecting previously unselected package libxcb-shm0:riscv64. Preparing to unpack .../088-libxcb-shm0_1.14-3ubuntu2_riscv64.deb ... Unpacking libxcb-shm0:riscv64 (1.14-3ubuntu2) ... Selecting previously unselected package libxcb-sync1:riscv64. Preparing to unpack .../089-libxcb-sync1_1.14-3ubuntu2_riscv64.deb ... Unpacking libxcb-sync1:riscv64 (1.14-3ubuntu2) ... Selecting previously unselected package libxcb-xfixes0:riscv64. Preparing to unpack .../090-libxcb-xfixes0_1.14-3ubuntu2_riscv64.deb ... Unpacking libxcb-xfixes0:riscv64 (1.14-3ubuntu2) ... Selecting previously unselected package libxfixes3:riscv64. Preparing to unpack .../091-libxfixes3_1%3a5.0.3-2build2_riscv64.deb ... Unpacking libxfixes3:riscv64 (1:5.0.3-2build2) ... Selecting previously unselected package libxshmfence1:riscv64. Preparing to unpack .../092-libxshmfence1_1.3-1build3_riscv64.deb ... Unpacking libxshmfence1:riscv64 (1.3-1build3) ... Selecting previously unselected package libxxf86vm1:riscv64. Preparing to unpack .../093-libxxf86vm1_1%3a1.1.4-1build2_riscv64.deb ... Unpacking libxxf86vm1:riscv64 (1:1.1.4-1build2) ... Selecting previously unselected package libdrm-amdgpu1:riscv64. Preparing to unpack .../094-libdrm-amdgpu1_2.4.107-8ubuntu1_riscv64.deb ... Unpacking libdrm-amdgpu1:riscv64 (2.4.107-8ubuntu1) ... Selecting previously unselected package libdrm-nouveau2:riscv64. Preparing to unpack .../095-libdrm-nouveau2_2.4.107-8ubuntu1_riscv64.deb ... Unpacking libdrm-nouveau2:riscv64 (2.4.107-8ubuntu1) ... Selecting previously unselected package libdrm-radeon1:riscv64. Preparing to unpack .../096-libdrm-radeon1_2.4.107-8ubuntu1_riscv64.deb ... Unpacking libdrm-radeon1:riscv64 (2.4.107-8ubuntu1) ... Selecting previously unselected package libllvm12:riscv64. Preparing to unpack .../097-libllvm12_1%3a12.0.1-16_riscv64.deb ... Unpacking libllvm12:riscv64 (1:12.0.1-16) ... Selecting previously unselected package libsensors-config. Preparing to unpack .../098-libsensors-config_1%3a3.6.0-7build1_all.deb ... Unpacking libsensors-config (1:3.6.0-7build1) ... Selecting previously unselected package libsensors5:riscv64. Preparing to unpack .../099-libsensors5_1%3a3.6.0-7build1_riscv64.deb ... Unpacking libsensors5:riscv64 (1:3.6.0-7build1) ... Selecting previously unselected package libvulkan1:riscv64. Preparing to unpack .../100-libvulkan1_1.2.189.0-2_riscv64.deb ... Unpacking libvulkan1:riscv64 (1.2.189.0-2) ... Selecting previously unselected package libgl1-mesa-dri:riscv64. Preparing to unpack .../101-libgl1-mesa-dri_21.2.2-1ubuntu1_riscv64.deb ... Unpacking libgl1-mesa-dri:riscv64 (21.2.2-1ubuntu1) ... Selecting previously unselected package libglx-mesa0:riscv64. Preparing to unpack .../102-libglx-mesa0_21.2.2-1ubuntu1_riscv64.deb ... Unpacking libglx-mesa0:riscv64 (21.2.2-1ubuntu1) ... Selecting previously unselected package libglx0:riscv64. Preparing to unpack .../103-libglx0_1.3.4-2_riscv64.deb ... Unpacking libglx0:riscv64 (1.3.4-2) ... Selecting previously unselected package libgl1:riscv64. Preparing to unpack .../104-libgl1_1.3.4-2_riscv64.deb ... Unpacking libgl1:riscv64 (1.3.4-2) ... Selecting previously unselected package libgif7:riscv64. Preparing to unpack .../105-libgif7_5.1.9-2build1_riscv64.deb ... Unpacking libgif7:riscv64 (5.1.9-2build1) ... Selecting previously unselected package libxi6:riscv64. Preparing to unpack .../106-libxi6_2%3a1.8-1_riscv64.deb ... Unpacking libxi6:riscv64 (2:1.8-1) ... Selecting previously unselected package libxrender1:riscv64. Preparing to unpack .../107-libxrender1_1%3a0.9.10-1build3_riscv64.deb ... Unpacking libxrender1:riscv64 (1:0.9.10-1build3) ... Selecting previously unselected package x11-common. Preparing to unpack .../108-x11-common_1%3a7.7+23ubuntu1_all.deb ... Unpacking x11-common (1:7.7+23ubuntu1) ... Selecting previously unselected package libxtst6:riscv64. Preparing to unpack .../109-libxtst6_2%3a1.2.3-1build3_riscv64.deb ... Unpacking libxtst6:riscv64 (2:1.2.3-1build3) ... Selecting previously unselected package openjdk-11-jre:riscv64. Preparing to unpack .../110-openjdk-11-jre_11.0.13+8-0ubuntu1_riscv64.deb ... Unpacking openjdk-11-jre:riscv64 (11.0.13+8-0ubuntu1) ... Selecting previously unselected package default-jre. Preparing to unpack .../111-default-jre_2%3a1.11-72build1_riscv64.deb ... Unpacking default-jre (2:1.11-72build1) ... Selecting previously unselected package openjdk-11-jdk-headless:riscv64. Preparing to unpack .../112-openjdk-11-jdk-headless_11.0.13+8-0ubuntu1_riscv64.deb ... Unpacking openjdk-11-jdk-headless:riscv64 (11.0.13+8-0ubuntu1) ... Selecting previously unselected package default-jdk-headless. Preparing to unpack .../113-default-jdk-headless_2%3a1.11-72build1_riscv64.deb ... Unpacking default-jdk-headless (2:1.11-72build1) ... Selecting previously unselected package openjdk-11-jdk:riscv64. Preparing to unpack .../114-openjdk-11-jdk_11.0.13+8-0ubuntu1_riscv64.deb ... Unpacking openjdk-11-jdk:riscv64 (11.0.13+8-0ubuntu1) ... Selecting previously unselected package default-jdk. Preparing to unpack .../115-default-jdk_2%3a1.11-72build1_riscv64.deb ... Unpacking default-jdk (2:1.11-72build1) ... Selecting previously unselected package fontconfig. Preparing to unpack .../116-fontconfig_2.13.1-4.2ubuntu4_riscv64.deb ... Unpacking fontconfig (2.13.1-4.2ubuntu4) ... Selecting previously unselected package fonts-lmodern. Preparing to unpack .../117-fonts-lmodern_2.004.5-6.1_all.deb ... Unpacking fonts-lmodern (2.004.5-6.1) ... Selecting previously unselected package libgfortran5:riscv64. Preparing to unpack .../118-libgfortran5_11.2.0-10ubuntu1_riscv64.deb ... Unpacking libgfortran5:riscv64 (11.2.0-10ubuntu1) ... Selecting previously unselected package libgfortran-11-dev:riscv64. Preparing to unpack .../119-libgfortran-11-dev_11.2.0-10ubuntu1_riscv64.deb ... Unpacking libgfortran-11-dev:riscv64 (11.2.0-10ubuntu1) ... Selecting previously unselected package gfortran-11. Preparing to unpack .../120-gfortran-11_11.2.0-10ubuntu1_riscv64.deb ... Unpacking gfortran-11 (11.2.0-10ubuntu1) ... Selecting previously unselected package gfortran. Preparing to unpack .../121-gfortran_4%3a11.2.0-1ubuntu1_riscv64.deb ... Unpacking gfortran (4:11.2.0-1ubuntu1) ... Selecting previously unselected package gir1.2-freedesktop:riscv64. Preparing to unpack .../122-gir1.2-freedesktop_1.70.0-2ubuntu1_riscv64.deb ... Unpacking gir1.2-freedesktop:riscv64 (1.70.0-2ubuntu1) ... Selecting previously unselected package gir1.2-harfbuzz-0.0:riscv64. Preparing to unpack .../123-gir1.2-harfbuzz-0.0_2.7.4-1ubuntu2_riscv64.deb ... Unpacking gir1.2-harfbuzz-0.0:riscv64 (2.7.4-1ubuntu2) ... Selecting previously unselected package libthai-data. Preparing to unpack .../124-libthai-data_0.1.28-4.1_all.deb ... Unpacking libthai-data (0.1.28-4.1) ... Selecting previously unselected package libdatrie1:riscv64. Preparing to unpack .../125-libdatrie1_0.2.13-1ubuntu3_riscv64.deb ... Unpacking libdatrie1:riscv64 (0.2.13-1ubuntu3) ... Selecting previously unselected package libthai0:riscv64. Preparing to unpack .../126-libthai0_0.1.28-4.1_riscv64.deb ... Unpacking libthai0:riscv64 (0.1.28-4.1) ... Selecting previously unselected package libpango-1.0-0:riscv64. Preparing to unpack .../127-libpango-1.0-0_1.48.10+ds1-1_riscv64.deb ... Unpacking libpango-1.0-0:riscv64 (1.48.10+ds1-1) ... Selecting previously unselected package libpixman-1-0:riscv64. Preparing to unpack .../128-libpixman-1-0_0.40.0-1build3_riscv64.deb ... Unpacking libpixman-1-0:riscv64 (0.40.0-1build3) ... Selecting previously unselected package libxcb-render0:riscv64. Preparing to unpack .../129-libxcb-render0_1.14-3ubuntu2_riscv64.deb ... Unpacking libxcb-render0:riscv64 (1.14-3ubuntu2) ... Selecting previously unselected package libcairo2:riscv64. Preparing to unpack .../130-libcairo2_1.16.0-5ubuntu2_riscv64.deb ... Unpacking libcairo2:riscv64 (1.16.0-5ubuntu2) ... Selecting previously unselected package libpangoft2-1.0-0:riscv64. Preparing to unpack .../131-libpangoft2-1.0-0_1.48.10+ds1-1_riscv64.deb ... Unpacking libpangoft2-1.0-0:riscv64 (1.48.10+ds1-1) ... Selecting previously unselected package libpangocairo-1.0-0:riscv64. Preparing to unpack .../132-libpangocairo-1.0-0_1.48.10+ds1-1_riscv64.deb ... Unpacking libpangocairo-1.0-0:riscv64 (1.48.10+ds1-1) ... Selecting previously unselected package libxft2:riscv64. Preparing to unpack .../133-libxft2_2.3.3-0ubuntu4_riscv64.deb ... Unpacking libxft2:riscv64 (2.3.3-0ubuntu4) ... Selecting previously unselected package libpangoxft-1.0-0:riscv64. Preparing to unpack .../134-libpangoxft-1.0-0_1.48.10+ds1-1_riscv64.deb ... Unpacking libpangoxft-1.0-0:riscv64 (1.48.10+ds1-1) ... Selecting previously unselected package gir1.2-pango-1.0:riscv64. Preparing to unpack .../135-gir1.2-pango-1.0_1.48.10+ds1-1_riscv64.deb ... Unpacking gir1.2-pango-1.0:riscv64 (1.48.10+ds1-1) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../136-icu-devtools_67.1-7ubuntu1_riscv64.deb ... Unpacking icu-devtools (67.1-7ubuntu1) ... Selecting previously unselected package libapache-pom-java. Preparing to unpack .../137-libapache-pom-java_18-1_all.deb ... Unpacking libapache-pom-java (18-1) ... Selecting previously unselected package libblas3:riscv64. Preparing to unpack .../138-libblas3_3.9.0-3ubuntu3_riscv64.deb ... Unpacking libblas3:riscv64 (3.9.0-3ubuntu3) ... Selecting previously unselected package libblas-dev:riscv64. Preparing to unpack .../139-libblas-dev_3.9.0-3ubuntu3_riscv64.deb ... Unpacking libblas-dev:riscv64 (3.9.0-3ubuntu3) ... Selecting previously unselected package libbrotli-dev:riscv64. Preparing to unpack .../140-libbrotli-dev_1.0.9-2build4_riscv64.deb ... Unpacking libbrotli-dev:riscv64 (1.0.9-2build4) ... Selecting previously unselected package libbz2-dev:riscv64. Preparing to unpack .../141-libbz2-dev_1.0.8-4ubuntu4_riscv64.deb ... Unpacking libbz2-dev:riscv64 (1.0.8-4ubuntu4) ... Selecting previously unselected package libcairo-gobject2:riscv64. Preparing to unpack .../142-libcairo-gobject2_1.16.0-5ubuntu2_riscv64.deb ... Unpacking libcairo-gobject2:riscv64 (1.16.0-5ubuntu2) ... Selecting previously unselected package liblzo2-2:riscv64. Preparing to unpack .../143-liblzo2-2_2.10-2build2_riscv64.deb ... Unpacking liblzo2-2:riscv64 (2.10-2build2) ... Selecting previously unselected package libcairo-script-interpreter2:riscv64. Preparing to unpack .../144-libcairo-script-interpreter2_1.16.0-5ubuntu2_riscv64.deb ... Unpacking libcairo-script-interpreter2:riscv64 (1.16.0-5ubuntu2) ... Selecting previously unselected package libexpat1-dev:riscv64. Preparing to unpack .../145-libexpat1-dev_2.4.1-3_riscv64.deb ... Unpacking libexpat1-dev:riscv64 (2.4.1-3) ... Selecting previously unselected package zlib1g-dev:riscv64. Preparing to unpack .../146-zlib1g-dev_1%3a1.2.11.dfsg-2ubuntu7_riscv64.deb ... Unpacking zlib1g-dev:riscv64 (1:1.2.11.dfsg-2ubuntu7) ... Selecting previously unselected package libpng-dev:riscv64. Preparing to unpack .../147-libpng-dev_1.6.37-3build4_riscv64.deb ... Unpacking libpng-dev:riscv64 (1.6.37-3build4) ... Selecting previously unselected package libfreetype-dev:riscv64. Preparing to unpack .../148-libfreetype-dev_2.11.0+dfsg-1_riscv64.deb ... Unpacking libfreetype-dev:riscv64 (2.11.0+dfsg-1) ... Selecting previously unselected package libfreetype6-dev:riscv64. Preparing to unpack .../149-libfreetype6-dev_2.11.0+dfsg-1_riscv64.deb ... Unpacking libfreetype6-dev:riscv64 (2.11.0+dfsg-1) ... Selecting previously unselected package uuid-dev:riscv64. Preparing to unpack .../150-uuid-dev_2.37.2-4ubuntu1_riscv64.deb ... Unpacking uuid-dev:riscv64 (2.37.2-4ubuntu1) ... Selecting previously unselected package pkg-config. Preparing to unpack .../151-pkg-config_0.29.2-1ubuntu2_riscv64.deb ... Unpacking pkg-config (0.29.2-1ubuntu2) ... Selecting previously unselected package libfontconfig-dev:riscv64. Preparing to unpack .../152-libfontconfig-dev_2.13.1-4.2ubuntu4_riscv64.deb ... Unpacking libfontconfig-dev:riscv64 (2.13.1-4.2ubuntu4) ... Selecting previously unselected package libfontconfig1-dev:riscv64. Preparing to unpack .../153-libfontconfig1-dev_2.13.1-4.2ubuntu4_riscv64.deb ... Unpacking libfontconfig1-dev:riscv64 (2.13.1-4.2ubuntu4) ... Selecting previously unselected package xorg-sgml-doctools. Preparing to unpack .../154-xorg-sgml-doctools_1%3a1.11-1.1_all.deb ... Unpacking xorg-sgml-doctools (1:1.11-1.1) ... Selecting previously unselected package x11proto-dev. Preparing to unpack .../155-x11proto-dev_2021.5-1_all.deb ... Unpacking x11proto-dev (2021.5-1) ... Selecting previously unselected package libxau-dev:riscv64. Preparing to unpack .../156-libxau-dev_1%3a1.0.9-1build4_riscv64.deb ... Unpacking libxau-dev:riscv64 (1:1.0.9-1build4) ... Selecting previously unselected package x11proto-core-dev. Preparing to unpack .../157-x11proto-core-dev_2021.5-1_all.deb ... Unpacking x11proto-core-dev (2021.5-1) ... Selecting previously unselected package libxdmcp-dev:riscv64. Preparing to unpack .../158-libxdmcp-dev_1%3a1.1.3-0ubuntu4_riscv64.deb ... Unpacking libxdmcp-dev:riscv64 (1:1.1.3-0ubuntu4) ... Selecting previously unselected package xtrans-dev. Preparing to unpack .../159-xtrans-dev_1.4.0-1_all.deb ... Unpacking xtrans-dev (1.4.0-1) ... Selecting previously unselected package libpthread-stubs0-dev:riscv64. Preparing to unpack .../160-libpthread-stubs0-dev_0.4-1build1_riscv64.deb ... Unpacking libpthread-stubs0-dev:riscv64 (0.4-1build1) ... Selecting previously unselected package libxcb1-dev:riscv64. Preparing to unpack .../161-libxcb1-dev_1.14-3ubuntu2_riscv64.deb ... Unpacking libxcb1-dev:riscv64 (1.14-3ubuntu2) ... Selecting previously unselected package libx11-dev:riscv64. Preparing to unpack .../162-libx11-dev_2%3a1.7.2-2_riscv64.deb ... Unpacking libx11-dev:riscv64 (2:1.7.2-2) ... Selecting previously unselected package libxrender-dev:riscv64. Preparing to unpack .../163-libxrender-dev_1%3a0.9.10-1build3_riscv64.deb ... Unpacking libxrender-dev:riscv64 (1:0.9.10-1build3) ... Selecting previously unselected package libxext-dev:riscv64. Preparing to unpack .../164-libxext-dev_2%3a1.3.4-0ubuntu4_riscv64.deb ... Unpacking libxext-dev:riscv64 (2:1.3.4-0ubuntu4) ... Selecting previously unselected package libice6:riscv64. Preparing to unpack .../165-libice6_2%3a1.0.10-1build1_riscv64.deb ... Unpacking libice6:riscv64 (2:1.0.10-1build1) ... Selecting previously unselected package libsm6:riscv64. Preparing to unpack .../166-libsm6_2%3a1.2.3-1build1_riscv64.deb ... Unpacking libsm6:riscv64 (2:1.2.3-1build1) ... Selecting previously unselected package libice-dev:riscv64. Preparing to unpack .../167-libice-dev_2%3a1.0.10-1build1_riscv64.deb ... Unpacking libice-dev:riscv64 (2:1.0.10-1build1) ... Selecting previously unselected package libsm-dev:riscv64. Preparing to unpack .../168-libsm-dev_2%3a1.2.3-1build1_riscv64.deb ... Unpacking libsm-dev:riscv64 (2:1.2.3-1build1) ... Selecting previously unselected package libpixman-1-dev:riscv64. Preparing to unpack .../169-libpixman-1-dev_0.40.0-1build3_riscv64.deb ... Unpacking libpixman-1-dev:riscv64 (0.40.0-1build3) ... Selecting previously unselected package libxcb-render0-dev:riscv64. Preparing to unpack .../170-libxcb-render0-dev_1.14-3ubuntu2_riscv64.deb ... Unpacking libxcb-render0-dev:riscv64 (1.14-3ubuntu2) ... Selecting previously unselected package libxcb-shm0-dev:riscv64. Preparing to unpack .../171-libxcb-shm0-dev_1.14-3ubuntu2_riscv64.deb ... Unpacking libxcb-shm0-dev:riscv64 (1.14-3ubuntu2) ... Selecting previously unselected package libffi-dev:riscv64. Preparing to unpack .../172-libffi-dev_3.4.2-1ubuntu5_riscv64.deb ... Unpacking libffi-dev:riscv64 (3.4.2-1ubuntu5) ... Selecting previously unselected package libglib2.0-bin. Preparing to unpack .../173-libglib2.0-bin_2.70.1-1_riscv64.deb ... Unpacking libglib2.0-bin (2.70.1-1) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../174-python3-lib2to3_3.9.7-1_all.deb ... Unpacking python3-lib2to3 (3.9.7-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../175-python3-distutils_3.9.7-1_all.deb ... Unpacking python3-distutils (3.9.7-1) ... Selecting previously unselected package libglib2.0-dev-bin. Preparing to unpack .../176-libglib2.0-dev-bin_2.70.1-1_riscv64.deb ... Unpacking libglib2.0-dev-bin (2.70.1-1) ... Selecting previously unselected package libblkid-dev:riscv64. Preparing to unpack .../177-libblkid-dev_2.37.2-4ubuntu1_riscv64.deb ... Unpacking libblkid-dev:riscv64 (2.37.2-4ubuntu1) ... Selecting previously unselected package libsepol1-dev:riscv64. Preparing to unpack .../178-libsepol1-dev_3.1-1ubuntu2_riscv64.deb ... Unpacking libsepol1-dev:riscv64 (3.1-1ubuntu2) ... Selecting previously unselected package libpcre2-16-0:riscv64. Preparing to unpack .../179-libpcre2-16-0_10.37-0ubuntu2_riscv64.deb ... Unpacking libpcre2-16-0:riscv64 (10.37-0ubuntu2) ... Selecting previously unselected package libpcre2-32-0:riscv64. Preparing to unpack .../180-libpcre2-32-0_10.37-0ubuntu2_riscv64.deb ... Unpacking libpcre2-32-0:riscv64 (10.37-0ubuntu2) ... Selecting previously unselected package libpcre2-posix3:riscv64. Preparing to unpack .../181-libpcre2-posix3_10.37-0ubuntu2_riscv64.deb ... Unpacking libpcre2-posix3:riscv64 (10.37-0ubuntu2) ... Selecting previously unselected package libpcre2-dev:riscv64. Preparing to unpack .../182-libpcre2-dev_10.37-0ubuntu2_riscv64.deb ... Unpacking libpcre2-dev:riscv64 (10.37-0ubuntu2) ... Selecting previously unselected package libselinux1-dev:riscv64. Preparing to unpack .../183-libselinux1-dev_3.1-3build3_riscv64.deb ... Unpacking libselinux1-dev:riscv64 (3.1-3build3) ... Selecting previously unselected package libmount-dev:riscv64. Preparing to unpack .../184-libmount-dev_2.37.2-4ubuntu1_riscv64.deb ... Unpacking libmount-dev:riscv64 (2.37.2-4ubuntu1) ... Selecting previously unselected package libpcre16-3:riscv64. Preparing to unpack .../185-libpcre16-3_2%3a8.39-13build4_riscv64.deb ... Unpacking libpcre16-3:riscv64 (2:8.39-13build4) ... Selecting previously unselected package libpcre32-3:riscv64. Preparing to unpack .../186-libpcre32-3_2%3a8.39-13build4_riscv64.deb ... Unpacking libpcre32-3:riscv64 (2:8.39-13build4) ... Selecting previously unselected package libpcrecpp0v5:riscv64. Preparing to unpack .../187-libpcrecpp0v5_2%3a8.39-13build4_riscv64.deb ... Unpacking libpcrecpp0v5:riscv64 (2:8.39-13build4) ... Selecting previously unselected package libpcre3-dev:riscv64. Preparing to unpack .../188-libpcre3-dev_2%3a8.39-13build4_riscv64.deb ... Unpacking libpcre3-dev:riscv64 (2:8.39-13build4) ... Selecting previously unselected package libglib2.0-dev:riscv64. Preparing to unpack .../189-libglib2.0-dev_2.70.1-1_riscv64.deb ... Unpacking libglib2.0-dev:riscv64 (2.70.1-1) ... Selecting previously unselected package libcairo2-dev:riscv64. Preparing to unpack .../190-libcairo2-dev_1.16.0-5ubuntu2_riscv64.deb ... Unpacking libcairo2-dev:riscv64 (1.16.0-5ubuntu2) ... Selecting previously unselected package libcommons-parent-java. Preparing to unpack .../191-libcommons-parent-java_43-1_all.deb ... Unpacking libcommons-parent-java (43-1) ... Selecting previously unselected package libcommons-logging-java. Preparing to unpack .../192-libcommons-logging-java_1.2-2_all.deb ... Unpacking libcommons-logging-java (1.2-2) ... Selecting previously unselected package libsasl2-modules-db:riscv64. Preparing to unpack .../193-libsasl2-modules-db_2.1.27+dfsg-2.3_riscv64.deb ... Unpacking libsasl2-modules-db:riscv64 (2.1.27+dfsg-2.3) ... Selecting previously unselected package libsasl2-2:riscv64. Preparing to unpack .../194-libsasl2-2_2.1.27+dfsg-2.3_riscv64.deb ... Unpacking libsasl2-2:riscv64 (2.1.27+dfsg-2.3) ... Selecting previously unselected package libldap-2.5-0:riscv64. Preparing to unpack .../195-libldap-2.5-0_2.5.6+dfsg-1~exp1ubuntu1_riscv64.deb ... Unpacking libldap-2.5-0:riscv64 (2.5.6+dfsg-1~exp1ubuntu1) ... Selecting previously unselected package libnghttp2-14:riscv64. Preparing to unpack .../196-libnghttp2-14_1.43.0-1build1_riscv64.deb ... Unpacking libnghttp2-14:riscv64 (1.43.0-1build1) ... Selecting previously unselected package librtmp1:riscv64. Preparing to unpack .../197-librtmp1_2.4+20151223.gitfa8646d.1-2build3_riscv64.deb ... Unpacking librtmp1:riscv64 (2.4+20151223.gitfa8646d.1-2build3) ... Selecting previously unselected package libssh-4:riscv64. Preparing to unpack .../198-libssh-4_0.9.6-1_riscv64.deb ... Unpacking libssh-4:riscv64 (0.9.6-1) ... Selecting previously unselected package libcurl4:riscv64. Preparing to unpack .../199-libcurl4_7.74.0-1.3ubuntu2_riscv64.deb ... Unpacking libcurl4:riscv64 (7.74.0-1.3ubuntu2) ... Selecting previously unselected package libcurl4-openssl-dev:riscv64. Preparing to unpack .../200-libcurl4-openssl-dev_7.74.0-1.3ubuntu2_riscv64.deb ... Unpacking libcurl4-openssl-dev:riscv64 (7.74.0-1.3ubuntu2) ... Selecting previously unselected package libdatrie-dev:riscv64. Preparing to unpack .../201-libdatrie-dev_0.2.13-1ubuntu3_riscv64.deb ... Unpacking libdatrie-dev:riscv64 (0.2.13-1ubuntu3) ... Selecting previously unselected package libdeflate0:riscv64. Preparing to unpack .../202-libdeflate0_1.7-2ubuntu2_riscv64.deb ... Unpacking libdeflate0:riscv64 (1.7-2ubuntu2) ... Selecting previously unselected package libdeflate-dev:riscv64. Preparing to unpack .../203-libdeflate-dev_1.7-2ubuntu2_riscv64.deb ... Unpacking libdeflate-dev:riscv64 (1.7-2ubuntu2) ... Selecting previously unselected package libfontenc1:riscv64. Preparing to unpack .../204-libfontenc1_1%3a1.1.4-1build2_riscv64.deb ... Unpacking libfontenc1:riscv64 (1:1.1.4-1build2) ... Selecting previously unselected package libfribidi-dev:riscv64. Preparing to unpack .../205-libfribidi-dev_1.0.8-2ubuntu2_riscv64.deb ... Unpacking libfribidi-dev:riscv64 (1.0.8-2ubuntu2) ... Selecting previously unselected package libgraphite2-dev:riscv64. Preparing to unpack .../206-libgraphite2-dev_1.3.14-1build1_riscv64.deb ... Unpacking libgraphite2-dev:riscv64 (1.3.14-1build1) ... Selecting previously unselected package libharfbuzz-icu0:riscv64. Preparing to unpack .../207-libharfbuzz-icu0_2.7.4-1ubuntu2_riscv64.deb ... Unpacking libharfbuzz-icu0:riscv64 (2.7.4-1ubuntu2) ... Selecting previously unselected package libharfbuzz-gobject0:riscv64. Preparing to unpack .../208-libharfbuzz-gobject0_2.7.4-1ubuntu2_riscv64.deb ... Unpacking libharfbuzz-gobject0:riscv64 (2.7.4-1ubuntu2) ... Selecting previously unselected package libicu-dev:riscv64. Preparing to unpack .../209-libicu-dev_67.1-7ubuntu1_riscv64.deb ... Unpacking libicu-dev:riscv64 (67.1-7ubuntu1) ... Selecting previously unselected package libharfbuzz-dev:riscv64. Preparing to unpack .../210-libharfbuzz-dev_2.7.4-1ubuntu2_riscv64.deb ... Unpacking libharfbuzz-dev:riscv64 (2.7.4-1ubuntu2) ... Selecting previously unselected package libjpeg-turbo8-dev:riscv64. Preparing to unpack .../211-libjpeg-turbo8-dev_2.0.6-0ubuntu3_riscv64.deb ... Unpacking libjpeg-turbo8-dev:riscv64 (2.0.6-0ubuntu3) ... Selecting previously unselected package libjpeg8-dev:riscv64. Preparing to unpack .../212-libjpeg8-dev_8c-2ubuntu8_riscv64.deb ... Unpacking libjpeg8-dev:riscv64 (8c-2ubuntu8) ... Selecting previously unselected package libjpeg-dev:riscv64. Preparing to unpack .../213-libjpeg-dev_8c-2ubuntu8_riscv64.deb ... Unpacking libjpeg-dev:riscv64 (8c-2ubuntu8) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../214-libjs-jquery_3.5.1+dfsg+~3.5.5-8_all.deb ... Unpacking libjs-jquery (3.5.1+dfsg+~3.5.5-8) ... Selecting previously unselected package libkpathsea6:riscv64. Preparing to unpack .../215-libkpathsea6_2021.20210626.59705-1_riscv64.deb ... Unpacking libkpathsea6:riscv64 (2021.20210626.59705-1) ... Selecting previously unselected package liblapack3:riscv64. Preparing to unpack .../216-liblapack3_3.9.0-3ubuntu3_riscv64.deb ... Unpacking liblapack3:riscv64 (3.9.0-3ubuntu3) ... Selecting previously unselected package liblapack-dev:riscv64. Preparing to unpack .../217-liblapack-dev_3.9.0-3ubuntu3_riscv64.deb ... Unpacking liblapack-dev:riscv64 (3.9.0-3ubuntu3) ... Selecting previously unselected package libmime-charset-perl. Preparing to unpack .../218-libmime-charset-perl_1.012.2-1_all.deb ... Unpacking libmime-charset-perl (1.012.2-1) ... Selecting previously unselected package libncurses-dev:riscv64. Preparing to unpack .../219-libncurses-dev_6.2+20210905-1_riscv64.deb ... Unpacking libncurses-dev:riscv64 (6.2+20210905-1) ... Selecting previously unselected package libncurses5-dev:riscv64. Preparing to unpack .../220-libncurses5-dev_6.2+20210905-1_riscv64.deb ... Unpacking libncurses5-dev:riscv64 (6.2+20210905-1) ... Selecting previously unselected package libthai-dev:riscv64. Preparing to unpack .../221-libthai-dev_0.1.28-4.1_riscv64.deb ... Unpacking libthai-dev:riscv64 (0.1.28-4.1) ... Selecting previously unselected package libxft-dev:riscv64. Preparing to unpack .../222-libxft-dev_2.3.3-0ubuntu4_riscv64.deb ... Unpacking libxft-dev:riscv64 (2.3.3-0ubuntu4) ... Selecting previously unselected package pango1.0-tools. Preparing to unpack .../223-pango1.0-tools_1.48.10+ds1-1_riscv64.deb ... Unpacking pango1.0-tools (1.48.10+ds1-1) ... Selecting previously unselected package libpango1.0-dev:riscv64. Preparing to unpack .../224-libpango1.0-dev_1.48.10+ds1-1_riscv64.deb ... Unpacking libpango1.0-dev:riscv64 (1.48.10+ds1-1) ... Selecting previously unselected package libpaper1:riscv64. Preparing to unpack .../225-libpaper1_1.1.28build1_riscv64.deb ... Unpacking libpaper1:riscv64 (1.1.28build1) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../226-libpaper-utils_1.1.28build1_riscv64.deb ... Unpacking libpaper-utils (1.1.28build1) ... Selecting previously unselected package libptexenc1:riscv64. Preparing to unpack .../227-libptexenc1_2021.20210626.59705-1_riscv64.deb ... Unpacking libptexenc1:riscv64 (2021.20210626.59705-1) ... Selecting previously unselected package libreadline-dev:riscv64. Preparing to unpack .../228-libreadline-dev_8.1-2build1_riscv64.deb ... Unpacking libreadline-dev:riscv64 (8.1-2build1) ... Selecting previously unselected package libsombok3:riscv64. Preparing to unpack .../229-libsombok3_2.4.0-2_riscv64.deb ... Unpacking libsombok3:riscv64 (2.4.0-2) ... Selecting previously unselected package libsynctex2:riscv64. Preparing to unpack .../230-libsynctex2_2021.20210626.59705-1_riscv64.deb ... Unpacking libsynctex2:riscv64 (2021.20210626.59705-1) ... Selecting previously unselected package libtcl8.6:riscv64. Preparing to unpack .../231-libtcl8.6_8.6.12+dfsg-1_riscv64.deb ... Unpacking libtcl8.6:riscv64 (8.6.12+dfsg-1) ... Selecting previously unselected package libteckit0:riscv64. Preparing to unpack .../232-libteckit0_2.5.10+ds1-3_riscv64.deb ... Unpacking libteckit0:riscv64 (2.5.10+ds1-3) ... Selecting previously unselected package libtexlua53:riscv64. Preparing to unpack .../233-libtexlua53_2021.20210626.59705-1_riscv64.deb ... Unpacking libtexlua53:riscv64 (2021.20210626.59705-1) ... Selecting previously unselected package libtext-unidecode-perl. Preparing to unpack .../234-libtext-unidecode-perl_1.30-1_all.deb ... Unpacking libtext-unidecode-perl (1.30-1) ... Selecting previously unselected package libjbig0:riscv64. Preparing to unpack .../235-libjbig0_2.1-3.1build2_riscv64.deb ... Unpacking libjbig0:riscv64 (2.1-3.1build2) ... Selecting previously unselected package libjbig-dev:riscv64. Preparing to unpack .../236-libjbig-dev_2.1-3.1build2_riscv64.deb ... Unpacking libjbig-dev:riscv64 (2.1-3.1build2) ... Selecting previously unselected package liblzma-dev:riscv64. Preparing to unpack .../237-liblzma-dev_5.2.5-2build1_riscv64.deb ... Unpacking liblzma-dev:riscv64 (5.2.5-2build1) ... Selecting previously unselected package libwebp6:riscv64. Preparing to unpack .../238-libwebp6_0.6.1-2.1build1_riscv64.deb ... Unpacking libwebp6:riscv64 (0.6.1-2.1build1) ... Selecting previously unselected package libtiff5:riscv64. Preparing to unpack .../239-libtiff5_4.3.0-2_riscv64.deb ... Unpacking libtiff5:riscv64 (4.3.0-2) ... Selecting previously unselected package libtiffxx5:riscv64. Preparing to unpack .../240-libtiffxx5_4.3.0-2_riscv64.deb ... Unpacking libtiffxx5:riscv64 (4.3.0-2) ... Selecting previously unselected package libtiff-dev:riscv64. Preparing to unpack .../241-libtiff-dev_4.3.0-2_riscv64.deb ... Unpacking libtiff-dev:riscv64 (4.3.0-2) ... Selecting previously unselected package libtiff5-dev. Preparing to unpack .../242-libtiff5-dev_4.3.0-2_riscv64.deb ... Unpacking libtiff5-dev (4.3.0-2) ... Selecting previously unselected package libxss1:riscv64. Preparing to unpack .../243-libxss1_1%3a1.2.3-1build1_riscv64.deb ... Unpacking libxss1:riscv64 (1:1.2.3-1build1) ... Selecting previously unselected package libtk8.6:riscv64. Preparing to unpack .../244-libtk8.6_8.6.12-1_riscv64.deb ... Unpacking libtk8.6:riscv64 (8.6.12-1) ... Selecting previously unselected package libunicode-linebreak-perl. Preparing to unpack .../245-libunicode-linebreak-perl_0.0.20190101-1build2_riscv64.deb ... Unpacking libunicode-linebreak-perl (0.0.20190101-1build2) ... Selecting previously unselected package libxt6:riscv64. Preparing to unpack .../246-libxt6_1%3a1.2.0-1build1_riscv64.deb ... Unpacking libxt6:riscv64 (1:1.2.0-1build1) ... Selecting previously unselected package libxmu6:riscv64. Preparing to unpack .../247-libxmu6_2%3a1.1.3-0ubuntu2_riscv64.deb ... Unpacking libxmu6:riscv64 (2:1.1.3-0ubuntu2) ... Selecting previously unselected package libxpm4:riscv64. Preparing to unpack .../248-libxpm4_1%3a3.5.12-1build1_riscv64.deb ... Unpacking libxpm4:riscv64 (1:3.5.12-1build1) ... Selecting previously unselected package libxaw7:riscv64. Preparing to unpack .../249-libxaw7_2%3a1.0.13-1.1build1_riscv64.deb ... Unpacking libxaw7:riscv64 (2:1.0.13-1.1build1) ... Selecting previously unselected package libxfont2:riscv64. Preparing to unpack .../250-libxfont2_1%3a2.0.4-1build3_riscv64.deb ... Unpacking libxfont2:riscv64 (1:2.0.4-1build3) ... Selecting previously unselected package libxkbfile1:riscv64. Preparing to unpack .../251-libxkbfile1_1%3a1.1.0-1build2_riscv64.deb ... Unpacking libxkbfile1:riscv64 (1:1.1.0-1build2) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../252-libxml-namespacesupport-perl_1.12-1.1_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-1.1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../253-libxml-sax-base-perl_1.09-1.1_all.deb ... Unpacking libxml-sax-base-perl (1.09-1.1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../254-libxml-sax-perl_1.02+dfsg-3_all.deb ... Unpacking libxml-sax-perl (1.02+dfsg-3) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../255-libxml-libxml-perl_2.0134+dfsg-2build2_riscv64.deb ... Unpacking libxml-libxml-perl (2.0134+dfsg-2build2) ... Selecting previously unselected package libxss-dev:riscv64. Preparing to unpack .../256-libxss-dev_1%3a1.2.3-1build1_riscv64.deb ... Unpacking libxss-dev:riscv64 (1:1.2.3-1build1) ... Selecting previously unselected package libxt-dev:riscv64. Preparing to unpack .../257-libxt-dev_1%3a1.2.0-1build1_riscv64.deb ... Unpacking libxt-dev:riscv64 (1:1.2.0-1build1) ... Selecting previously unselected package libzzip-0-13:riscv64. Preparing to unpack .../258-libzzip-0-13_0.13.72+dfsg.1-1.1_riscv64.deb ... Unpacking libzzip-0-13:riscv64 (0.13.72+dfsg.1-1.1) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../259-xfonts-encodings_1%3a1.0.5-0ubuntu1_all.deb ... Unpacking xfonts-encodings (1:1.0.5-0ubuntu1) ... Selecting previously unselected package xfonts-utils. Preparing to unpack .../260-xfonts-utils_1%3a7.7+6build1_riscv64.deb ... Unpacking xfonts-utils (1:7.7+6build1) ... Selecting previously unselected package lmodern. Preparing to unpack .../261-lmodern_2.004.5-6.1_all.deb ... Unpacking lmodern (2.004.5-6.1) ... Selecting previously unselected package mpack. Preparing to unpack .../262-mpack_1.6-18_riscv64.deb ... Unpacking mpack (1.6-18) ... Selecting previously unselected package preview-latex-style. Preparing to unpack .../263-preview-latex-style_12.2-1ubuntu1_all.deb ... Unpacking preview-latex-style (12.2-1ubuntu1) ... Selecting previously unselected package t1utils. Preparing to unpack .../264-t1utils_1.41-4build1_riscv64.deb ... Unpacking t1utils (1.41-4build1) ... Selecting previously unselected package tcl8.6. Preparing to unpack .../265-tcl8.6_8.6.12+dfsg-1_riscv64.deb ... Unpacking tcl8.6 (8.6.12+dfsg-1) ... Selecting previously unselected package tcl8.6-dev:riscv64. Preparing to unpack .../266-tcl8.6-dev_8.6.12+dfsg-1_riscv64.deb ... Unpacking tcl8.6-dev:riscv64 (8.6.12+dfsg-1) ... Selecting previously unselected package texinfo. Preparing to unpack .../267-texinfo_6.7.0.dfsg.2-6build1_riscv64.deb ... Unpacking texinfo (6.7.0.dfsg.2-6build1) ... Selecting previously unselected package texlive-binaries. Preparing to unpack .../268-texlive-binaries_2021.20210626.59705-1_riscv64.deb ... Unpacking texlive-binaries (2021.20210626.59705-1) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../269-xdg-utils_1.1.3-2ubuntu2_all.deb ... Unpacking xdg-utils (1.1.3-2ubuntu2) ... Selecting previously unselected package texlive-base. Preparing to unpack .../270-texlive-base_2021.20210921-1_all.deb ... Unpacking texlive-base (2021.20210921-1) ... Selecting previously unselected package texlive-latex-base. Preparing to unpack .../271-texlive-latex-base_2021.20210921-1_all.deb ... Unpacking texlive-latex-base (2021.20210921-1) ... Selecting previously unselected package texlive-luatex. Preparing to unpack .../272-texlive-luatex_2021.20210921-1_all.deb ... Unpacking texlive-luatex (2021.20210921-1) ... Selecting previously unselected package texlive-plain-generic. Preparing to unpack .../273-texlive-plain-generic_2021.20210921-1_all.deb ... Unpacking texlive-plain-generic (2021.20210921-1) ... Selecting previously unselected package texlive-extra-utils. Preparing to unpack .../274-texlive-extra-utils_2021.20210921-1_all.deb ... Unpacking texlive-extra-utils (2021.20210921-1) ... Selecting previously unselected package texlive-fonts-extra. Preparing to unpack .../275-texlive-fonts-extra_2021.20210921-1_all.deb ... Unpacking texlive-fonts-extra (2021.20210921-1) ... Selecting previously unselected package texlive-fonts-recommended. Preparing to unpack .../276-texlive-fonts-recommended_2021.20210921-1_all.deb ... Unpacking texlive-fonts-recommended (2021.20210921-1) ... Selecting previously unselected package libfontbox-java. Preparing to unpack .../277-libfontbox-java_1%3a1.8.16-2_all.deb ... Unpacking libfontbox-java (1:1.8.16-2) ... Selecting previously unselected package libpdfbox-java. Preparing to unpack .../278-libpdfbox-java_1%3a1.8.16-2_all.deb ... Unpacking libpdfbox-java (1:1.8.16-2) ... Selecting previously unselected package texlive-latex-recommended. Preparing to unpack .../279-texlive-latex-recommended_2021.20210921-1_all.deb ... Unpacking texlive-latex-recommended (2021.20210921-1) ... Selecting previously unselected package texlive-pictures. Preparing to unpack .../280-texlive-pictures_2021.20210921-1_all.deb ... Unpacking texlive-pictures (2021.20210921-1) ... Selecting previously unselected package texlive-latex-extra. Preparing to unpack .../281-texlive-latex-extra_2021.20210921-1_all.deb ... Unpacking texlive-latex-extra (2021.20210921-1) ... Selecting previously unselected package tk8.6. Preparing to unpack .../282-tk8.6_8.6.12-1_riscv64.deb ... Unpacking tk8.6 (8.6.12-1) ... Selecting previously unselected package tk8.6-dev:riscv64. Preparing to unpack .../283-tk8.6-dev_8.6.12-1_riscv64.deb ... Unpacking tk8.6-dev:riscv64 (8.6.12-1) ... Selecting previously unselected package x11-xkb-utils. Preparing to unpack .../284-x11-xkb-utils_7.7+5build3_riscv64.deb ... Unpacking x11-xkb-utils (7.7+5build3) ... Selecting previously unselected package xfonts-base. Preparing to unpack .../285-xfonts-base_1%3a1.0.5_all.deb ... Unpacking xfonts-base (1:1.0.5) ... Selecting previously unselected package xserver-common. Preparing to unpack .../286-xserver-common_2%3a1.20.13-1ubuntu1_all.deb ... Unpacking xserver-common (2:1.20.13-1ubuntu1) ... Selecting previously unselected package xvfb. Preparing to unpack .../287-xvfb_2%3a1.20.13-1ubuntu1_riscv64.deb ... Unpacking xvfb (2:1.20.13-1ubuntu1) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../288-sbuild-build-depends-main-dummy_0.invalid.0_riscv64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up media-types (4.0.0) ... Setting up libpcrecpp0v5:riscv64 (2:8.39-13build4) ... Setting up libpipeline1:riscv64 (1.5.4-1) ... Setting up libgraphite2-3:riscv64 (1.3.14-1build1) ... Setting up liblcms2-2:riscv64 (2.12~rc1-2build1) ... Setting up libpixman-1-0:riscv64 (0.40.0-1build3) ... Setting up libxau6:riscv64 (1:1.0.9-1build4) ... Setting up libncurses-dev:riscv64 (6.2+20210905-1) ... Setting up libpsl5:riscv64 (0.21.0-1.2build1) ... Setting up libpixman-1-dev:riscv64 (0.40.0-1build3) ... Setting up bsdextrautils (2.37.2-4ubuntu1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libpcre16-3:riscv64 (2:8.39-13build4) ... Setting up java-common (0.72build1) ... Setting up libicu67:riscv64 (67.1-7ubuntu1) ... Setting up libdatrie1:riscv64 (0.2.13-1ubuntu3) ... Setting up libmagic-mgc (1:5.39-3build1) ... Setting up mpack (1.6-18) ... Setting up libtexlua53:riscv64 (2021.20210626.59705-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:riscv64 (2.70.1-1) ... No schema files found: doing nothing. Setting up libglvnd0:riscv64 (1.3.4-2) ... Setting up libdebhelper-perl (13.3.4ubuntu3) ... Setting up libbrotli1:riscv64 (1.0.9-2build4) ... Setting up libfontbox-java (1:1.8.16-2) ... Setting up x11-common (1:7.7+23ubuntu1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libsensors-config (1:3.6.0-7build1) ... Setting up libnghttp2-14:riscv64 (1.43.0-1build1) ... Setting up libmagic1:riscv64 (1:5.39-3build1) ... Setting up libsepol1-dev:riscv64 (3.1-1ubuntu2) ... Setting up libdeflate0:riscv64 (1.7-2ubuntu2) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up gettext-base (0.21-4ubuntu3) ... Setting up xkb-data (2.33-1) ... Setting up liblzo2-2:riscv64 (2.10-2build2) ... Setting up libzzip-0-13:riscv64 (0.13.72+dfsg.1-1.1) ... Setting up file (1:5.39-3build1) ... Setting up libreadline-dev:riscv64 (8.1-2build1) ... Setting up libffi-dev:riscv64 (3.4.2-1ubuntu5) ... Setting up libpthread-stubs0-dev:riscv64 (0.4-1build1) ... Setting up libjbig0:riscv64 (2.1-3.1build2) ... Setting up libpcre2-16-0:riscv64 (10.37-0ubuntu2) ... Setting up libsasl2-modules-db:riscv64 (2.1.27+dfsg-2.3) ... Setting up libasound2-data (1.2.4-1.1ubuntu4) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up xtrans-dev (1.4.0-1) ... Setting up libgraphite2-dev:riscv64 (1.3.14-1build1) ... Setting up libfontenc1:riscv64 (1:1.1.4-1build2) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libpcre2-32-0:riscv64 (10.37-0ubuntu2) ... Setting up libblas3:riscv64 (3.9.0-3ubuntu3) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/riscv64-linux-gnu/libblas.so.3 (libblas.so.3-riscv64-linux-gnu) in auto mode Setting up libglib2.0-data (2.70.1-1) ... Setting up libexpat1-dev:riscv64 (2.4.1-3) ... Setting up libfreetype6:riscv64 (2.11.0+dfsg-1) ... Setting up libx11-data (2:1.7.2-2) ... Setting up libnspr4:riscv64 (2:4.32-1) ... Setting up librtmp1:riscv64 (2.4+20151223.gitfa8646d.1-2build3) ... Setting up libteckit0:riscv64 (2.5.10+ds1-3) ... Setting up bash-completion (1:2.11-4ubuntu1) ... Setting up uuid-dev:riscv64 (2.37.2-4ubuntu1) ... Setting up libapache-pom-java (18-1) ... Setting up libavahi-common-data:riscv64 (0.8-5ubuntu4) ... Setting up libdbus-1-3:riscv64 (1.12.20-2ubuntu2) ... Setting up libsigsegv2:riscv64 (2.13-1ubuntu2) ... Setting up xfonts-encodings (1:1.0.5-0ubuntu1) ... Setting up libfribidi0:riscv64 (1.0.8-2ubuntu2) ... Setting up t1utils (1.41-4build1) ... Setting up libpcre32-3:riscv64 (2:8.39-13build4) ... Setting up libtcl8.6:riscv64 (8.6.12+dfsg-1) ... Setting up autopoint (0.21-4ubuntu3) ... Setting up libwebp6:riscv64 (0.6.1-2.1build1) ... Setting up icu-devtools (67.1-7ubuntu1) ... Setting up pkg-config (0.29.2-1ubuntu2) ... Setting up fonts-dejavu-core (2.37-2build1) ... Setting up libpcsclite1:riscv64 (1.9.4-1) ... Setting up ucf (3.0043) ... Setting up libsensors5:riscv64 (1:3.6.0-7build1) ... Setting up libjpeg-turbo8:riscv64 (2.0.6-0ubuntu3) ... Setting up libglapi-mesa:riscv64 (21.2.2-1ubuntu1) ... Setting up libkpathsea6:riscv64 (2021.20210626.59705-1) ... Setting up libsasl2-2:riscv64 (2.1.27+dfsg-2.3) ... Setting up libssh-4:riscv64 (0.9.6-1) ... Setting up libgfortran5:riscv64 (11.2.0-10ubuntu1) ... Setting up libvulkan1:riscv64 (1.2.189.0-2) ... Setting up liblzma-dev:riscv64 (5.2.5-2build1) ... Setting up libgif7:riscv64 (5.1.9-2build1) ... Setting up zlib1g-dev:riscv64 (1:1.2.11.dfsg-2ubuntu7) ... Setting up libpcre2-posix3:riscv64 (10.37-0ubuntu2) ... Setting up libmd0:riscv64 (1.0.4-1) ... Setting up libdatrie-dev:riscv64 (0.2.13-1ubuntu3) ... Setting up libxshmfence1:riscv64 (1.3-1build3) ... Setting up libmime-charset-perl (1.012.2-1) ... Setting up libuchardet0:riscv64 (0.0.7-1build1) ... Setting up libasound2:riscv64 (1.2.4-1.1ubuntu4) ... Setting up libncurses5-dev:riscv64 (6.2+20210905-1) ... Setting up libmpdec3:riscv64 (2.5.1-2build1) ... Setting up fonts-lmodern (2.004.5-6.1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libharfbuzz0b:riscv64 (2.7.4-1ubuntu2) ... Setting up libthai-data (0.1.28-4.1) ... Setting up libgirepository-1.0-1:riscv64 (1.70.0-2ubuntu1) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-8) ... Setting up libtext-unidecode-perl (1.30-1) ... Setting up libbsd0:riscv64 (0.11.3-1ubuntu3) ... Setting up libdeflate-dev:riscv64 (1.7-2ubuntu2) ... Setting up libdrm-common (2.4.107-8ubuntu1) ... Setting up libelf1:riscv64 (0.185-2) ... Setting up libxfont2:riscv64 (1:2.0.4-1build3) ... Setting up libicu-dev:riscv64 (67.1-7ubuntu1) ... Setting up libxml2:riscv64 (2.9.12+dfsg-5) ... Setting up xdg-utils (1.1.3-2ubuntu2) ... Setting up libbrotli-dev:riscv64 (1.0.9-2build4) ... Setting up libblas-dev:riscv64 (3.9.0-3ubuntu3) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/blas/libblas.so to provide /usr/lib/riscv64-linux-gnu/libblas.so (libblas.so-riscv64-linux-gnu) in auto mode Setting up libsynctex2:riscv64 (2021.20210626.59705-1) ... Setting up libpython3.9-stdlib:riscv64 (3.9.8-1) ... Setting up libpython3-stdlib:riscv64 (3.9.7-4) ... Setting up libbz2-dev:riscv64 (1.0.8-4ubuntu4) ... Setting up libjpeg8:riscv64 (8c-2ubuntu8) ... Setting up x11proto-dev (2021.5-1) ... Setting up libfile-stripnondeterminism-perl (1.12.0-2) ... Setting up libblkid-dev:riscv64 (2.37.2-4ubuntu1) ... Setting up libpaper1:riscv64 (1.1.28build1) ... Creating config file /etc/papersize with new version Setting up libice6:riscv64 (2:1.0.10-1build1) ... Setting up libdw1:riscv64 (0.185-2) ... Setting up libjpeg-turbo8-dev:riscv64 (2.0.6-0ubuntu3) ... Setting up libxdmcp6:riscv64 (1:1.1.3-0ubuntu4) ... Setting up tcl8.6 (8.6.12+dfsg-1) ... Setting up liblapack3:riscv64 (3.9.0-3ubuntu3) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/riscv64-linux-gnu/liblapack.so.3 (liblapack.so.3-riscv64-linux-gnu) in auto mode Setting up libxcb1:riscv64 (1.14-3ubuntu2) ... Setting up gettext (0.21-4ubuntu3) ... Setting up libharfbuzz-icu0:riscv64 (2.7.4-1ubuntu2) ... Setting up libxcb-xfixes0:riscv64 (1.14-3ubuntu2) ... Setting up libpdfbox-java (1:1.8.16-2) ... Setting up libxau-dev:riscv64 (1:1.0.9-1build4) ... Setting up libpcre2-dev:riscv64 (10.37-0ubuntu2) ... Setting up libice-dev:riscv64 (2:1.0.10-1build1) ... Setting up libtool (2.4.6-15build1) ... Setting up libxcb-render0:riscv64 (1.14-3ubuntu2) ... Setting up libselinux1-dev:riscv64 (3.1-3build3) ... Setting up libpcre3-dev:riscv64 (2:8.39-13build4) ... Setting up libgfortran-11-dev:riscv64 (11.2.0-10ubuntu1) ... Setting up fontconfig-config (2.13.1-4.2ubuntu4) ... Setting up libfribidi-dev:riscv64 (1.0.8-2ubuntu2) ... Setting up libxcb-glx0:riscv64 (1.14-3ubuntu2) ... Setting up tcl8.6-dev:riscv64 (8.6.12+dfsg-1) ... Setting up libedit2:riscv64 (3.1-20210910-1) ... Setting up libpng-dev:riscv64 (1.6.37-3build4) ... Setting up libcommons-parent-java (43-1) ... Setting up libavahi-common3:riscv64 (0.8-5ubuntu4) ... Setting up libjbig-dev:riscv64 (2.1-3.1build2) ... Setting up libcommons-logging-java (1.2-2) ... Setting up libglib2.0-bin (2.70.1-1) ... Setting up m4 (1.4.18-5ubuntu1) ... Setting up libnss3:riscv64 (2:3.68-1ubuntu1) ... Setting up libxcb-shm0:riscv64 (1.14-3ubuntu2) ... Setting up libharfbuzz-gobject0:riscv64 (2.7.4-1ubuntu2) ... Setting up libpaper-utils (1.1.28build1) ... Setting up xfonts-utils (1:7.7+6build1) ... Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libldap-2.5-0:riscv64 (2.5.6+dfsg-1~exp1ubuntu1) ... Setting up libfreetype-dev:riscv64 (2.11.0+dfsg-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxcb-present0:riscv64 (1.14-3ubuntu2) ... Setting up tex-common (6.17) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libthai0:riscv64 (0.1.28-4.1) ... Setting up libxdmcp-dev:riscv64 (1:1.1.3-0ubuntu4) ... Setting up xfonts-base (1:1.0.5) ... Setting up libptexenc1:riscv64 (2021.20210626.59705-1) ... Setting up libxcb-sync1:riscv64 (1.14-3ubuntu2) ... Setting up x11proto-core-dev (2021.5-1) ... Setting up libllvm12:riscv64 (1:12.0.1-16) ... Setting up liblapack-dev:riscv64 (3.9.0-3ubuntu3) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/lapack/liblapack.so to provide /usr/lib/riscv64-linux-gnu/liblapack.so (liblapack.so-riscv64-linux-gnu) in auto mode Setting up gir1.2-glib-2.0:riscv64 (1.70.0-2ubuntu1) ... Setting up gfortran-11 (11.2.0-10ubuntu1) ... Setting up autoconf (2.71-2) ... Setting up libthai-dev:riscv64 (0.1.28-4.1) ... Setting up libxml-libxml-perl (2.0134+dfsg-2build2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxcb-dri2-0:riscv64 (1.14-3ubuntu2) ... Setting up dh-strip-nondeterminism (1.12.0-2) ... Setting up libdrm2:riscv64 (2.4.107-8ubuntu1) ... Setting up dwz (0.14-1build1) ... Setting up groff-base (1.22.4-7) ... Setting up lmodern (2.004.5-6.1) ... Setting up bison (2:3.8.2+dfsg-1) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode Setting up debugedit (1:5.0-0ubuntu2) ... Setting up libcurl4:riscv64 (7.74.0-1.3ubuntu2) ... Setting up libx11-6:riscv64 (2:1.7.2-2) ... Setting up libtiff5:riscv64 (4.3.0-2) ... Setting up libfontconfig1:riscv64 (2.13.1-4.2ubuntu4) ... Setting up libxkbfile1:riscv64 (1:1.1.0-1build2) ... Setting up libjpeg8-dev:riscv64 (8c-2ubuntu8) ... Setting up libsm6:riscv64 (2:1.2.3-1build1) ... Setting up libavahi-client3:riscv64 (0.8-5ubuntu4) ... Setting up libmount-dev:riscv64 (2.37.2-4ubuntu1) ... Setting up libxmuu1:riscv64 (2:1.1.3-0ubuntu2) ... Setting up python3.9 (3.9.8-1) ... Setting up libtiffxx5:riscv64 (4.3.0-2) ... Setting up libdrm-amdgpu1:riscv64 (2.4.107-8ubuntu1) ... Setting up automake (1:1.16.5-1ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libxcb-dri3-0:riscv64 (1.14-3ubuntu2) ... Setting up libx11-xcb1:riscv64 (2:1.7.2-2) ... Setting up fontconfig (2.13.1-4.2ubuntu4) ... Regenerating fonts cache... done. Setting up libdrm-nouveau2:riscv64 (2.4.107-8ubuntu1) ... Setting up gir1.2-freedesktop:riscv64 (1.70.0-2ubuntu1) ... Setting up libxcb1-dev:riscv64 (1.14-3ubuntu2) ... Setting up libxpm4:riscv64 (1:3.5.12-1build1) ... Setting up libxrender1:riscv64 (1:0.9.10-1build3) ... Setting up libsombok3:riscv64 (2.4.0-2) ... Setting up libsm-dev:riscv64 (2:1.2.3-1build1) ... Setting up libdrm-radeon1:riscv64 (2.4.107-8ubuntu1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up preview-latex-style (12.2-1ubuntu1) ... Setting up libpango-1.0-0:riscv64 (1.48.10+ds1-1) ... Setting up libgl1-mesa-dri:riscv64 (21.2.2-1ubuntu1) ... Setting up libjpeg-dev:riscv64 (8c-2ubuntu8) ... Setting up libx11-dev:riscv64 (2:1.7.2-2) ... Setting up libxext6:riscv64 (2:1.3.4-0ubuntu4) ... Setting up python3 (3.9.7-4) ... Setting up man-db (2.9.4-2build1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up gir1.2-harfbuzz-0.0:riscv64 (2.7.4-1ubuntu2) ... Setting up gfortran (4:11.2.0-1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:riscv64 (1.16.0-5ubuntu2) ... Setting up libfreetype6-dev:riscv64 (2.11.0+dfsg-1) ... Setting up libxxf86vm1:riscv64 (1:1.1.4-1build2) ... Setting up dh-autoreconf (20) ... Setting up libxcb-shm0-dev:riscv64 (1.14-3ubuntu2) ... Setting up libtiff-dev:riscv64 (4.3.0-2) ... Setting up libxfixes3:riscv64 (1:5.0.3-2build2) ... Setting up libcurl4-openssl-dev:riscv64 (7.74.0-1.3ubuntu2) ... Setting up libunicode-linebreak-perl (0.0.20190101-1build2) ... Setting up libxcb-render0-dev:riscv64 (1.14-3ubuntu2) ... Setting up libxt6:riscv64 (1:1.2.0-1build1) ... Setting up texinfo (6.7.0.dfsg.2-6build1) ... /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. Running mktexlsr. This may take some time. ... done. Setting up libxext-dev:riscv64 (2:1.3.4-0ubuntu4) ... Setting up libcups2:riscv64 (2.3.3op2-7ubuntu2) ... Setting up xauth (1:1.1-1build1) ... Setting up libcairo-gobject2:riscv64 (1.16.0-5ubuntu2) ... Setting up libxss1:riscv64 (1:1.2.3-1build1) ... Setting up libpangoft2-1.0-0:riscv64 (1.48.10+ds1-1) ... Setting up python3-lib2to3 (3.9.7-1) ... Setting up libxrender-dev:riscv64 (1:0.9.10-1build3) ... Setting up libpangocairo-1.0-0:riscv64 (1.48.10+ds1-1) ... Setting up python3-distutils (3.9.7-1) ... Setting up libcairo-script-interpreter2:riscv64 (1.16.0-5ubuntu2) ... Setting up libglib2.0-dev-bin (2.70.1-1) ... Setting up libxft2:riscv64 (2.3.3-0ubuntu4) ... Setting up libxmu6:riscv64 (2:1.1.3-0ubuntu2) ... Setting up libglx-mesa0:riscv64 (21.2.2-1ubuntu1) ... Setting up libpangoxft-1.0-0:riscv64 (1.48.10+ds1-1) ... Setting up libxi6:riscv64 (2:1.8-1) ... Setting up libglx0:riscv64 (1.3.4-2) ... Setting up libfontconfig-dev:riscv64 (2.13.1-4.2ubuntu4) ... Setting up libxtst6:riscv64 (2:1.2.3-1build3) ... Setting up libtk8.6:riscv64 (8.6.12-1) ... Setting up pango1.0-tools (1.48.10+ds1-1) ... Setting up libtiff5-dev (4.3.0-2) ... Setting up debhelper (13.3.4ubuntu3) ... Setting up libxaw7:riscv64 (2:1.0.13-1.1build1) ... Setting up libxss-dev:riscv64 (1:1.2.3-1build1) ... Setting up gir1.2-pango-1.0:riscv64 (1.48.10+ds1-1) ... Setting up libgl1:riscv64 (1.3.4-2) ... Setting up libglib2.0-dev:riscv64 (2.70.1-1) ... Setting up libxt-dev:riscv64 (1:1.2.0-1build1) ... Setting up texlive-binaries (2021.20210626.59705-1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up libcairo2-dev:riscv64 (1.16.0-5ubuntu2) ... Setting up texlive-base (2021.20210921-1) ... /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up libxft-dev:riscv64 (2.3.3-0ubuntu4) ... Setting up tk8.6 (8.6.12-1) ... Setting up libharfbuzz-dev:riscv64 (2.7.4-1ubuntu2) ... Setting up libfontconfig1-dev:riscv64 (2.13.1-4.2ubuntu4) ... Setting up texlive-luatex (2021.20210921-1) ... Setting up x11-xkb-utils (7.7+5build3) ... Setting up texlive-plain-generic (2021.20210921-1) ... Setting up texlive-latex-base (2021.20210921-1) ... Setting up texlive-extra-utils (2021.20210921-1) ... Setting up texlive-fonts-extra (2021.20210921-1) ... Setting up libpango1.0-dev:riscv64 (1.48.10+ds1-1) ... Setting up texlive-latex-recommended (2021.20210921-1) ... Setting up texlive-pictures (2021.20210921-1) ... Setting up tk8.6-dev:riscv64 (8.6.12-1) ... Setting up texlive-fonts-recommended (2021.20210921-1) ... Setting up xserver-common (2:1.20.13-1ubuntu1) ... Setting up xvfb (2:1.20.13-1ubuntu1) ... Setting up texlive-latex-extra (2021.20210921-1) ... Setting up default-jre-headless (2:1.11-72build1) ... Setting up openjdk-11-jre-headless:riscv64 (11.0.13+8-0ubuntu1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. Setting up openjdk-11-jre:riscv64 (11.0.13+8-0ubuntu1) ... Setting up openjdk-11-jdk-headless:riscv64 (11.0.13+8-0ubuntu1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode Setting up default-jre (2:1.11-72build1) ... Setting up default-jdk-headless (2:1.11-72build1) ... Setting up openjdk-11-jdk:riscv64 (11.0.13+8-0ubuntu1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-riscv64/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode Setting up ca-certificates-java (20190909) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:EC-ACC.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:Certum_EC-384_CA.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:AffirmTrust_Premium.pem Adding debian:Certigna.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:GTS_Root_R2.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:AffirmTrust_Networking.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:ISRG_Root_X1.pem Adding debian:ACCVRAIZ1.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:SecureSign_RootCA11.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Certigna_Root_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:GTS_Root_R1.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:SecureTrust_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Izenpe.com.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:GTS_Root_R3.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:GTS_Root_R4.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:TrustCor_ECA-1.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem done. Setting up default-jdk (2:1.11-72build1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.34-0ubuntu3) ... Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. Processing triggers for tex-common (6.17) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.11.0-1021-generic #22~20.04.1-Ubuntu SMP Wed Sep 29 15:58:33 UTC 2021 riscv64 (riscv64) Toolchain package versions: binutils_2.37-7ubuntu1 dpkg-dev_1.20.9ubuntu2 g++-11_11.2.0-10ubuntu1 gcc-11_11.2.0-10ubuntu1 libc6-dev_2.34-0ubuntu3 libstdc++-11-dev_11.2.0-10ubuntu1 libstdc++6_11.2.0-10ubuntu1 linux-libc-dev_5.13.0-19.19 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1ubuntu1 apt_2.3.11 autoconf_2.71-2 automake_1:1.16.5-1ubuntu1 autopoint_0.21-4ubuntu3 autotools-dev_20180224.1+nmu1 base-files_12ubuntu2 base-passwd_3.5.52 bash_5.1-3ubuntu2 bash-completion_1:2.11-4ubuntu1 binutils_2.37-7ubuntu1 binutils-common_2.37-7ubuntu1 binutils-riscv64-linux-gnu_2.37-7ubuntu1 bison_2:3.8.2+dfsg-1 bsdextrautils_2.37.2-4ubuntu1 bsdutils_1:2.37.2-4ubuntu1 build-essential_12.9ubuntu2 bzip2_1.0.8-4ubuntu4 ca-certificates_20211016 ca-certificates-java_20190909 coreutils_8.32-4ubuntu3 cpp_4:11.2.0-1ubuntu1 cpp-11_11.2.0-10ubuntu1 dash_0.5.11+git20210903+057cd650a4ed-3 debconf_1.5.79 debhelper_13.3.4ubuntu3 debianutils_5.5-1 debugedit_1:5.0-0ubuntu2 default-jdk_2:1.11-72build1 default-jdk-headless_2:1.11-72build1 default-jre_2:1.11-72build1 default-jre-headless_2:1.11-72build1 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-2 diffutils_1:3.8-0ubuntu1 dpkg_1.20.9ubuntu2 dpkg-dev_1.20.9ubuntu2 dwz_0.14-1build1 e2fsprogs_1.46.4-1ubuntu1 fakeroot_1.25.3-1.1ubuntu3 file_1:5.39-3build1 findutils_4.8.0-1ubuntu2 fontconfig_2.13.1-4.2ubuntu4 fontconfig-config_2.13.1-4.2ubuntu4 fonts-dejavu-core_2.37-2build1 fonts-lmodern_2.004.5-6.1 g++_4:11.2.0-1ubuntu1 g++-11_11.2.0-10ubuntu1 gcc_4:11.2.0-1ubuntu1 gcc-11_11.2.0-10ubuntu1 gcc-11-base_11.2.0-10ubuntu1 gettext_0.21-4ubuntu3 gettext-base_0.21-4ubuntu3 gfortran_4:11.2.0-1ubuntu1 gfortran-11_11.2.0-10ubuntu1 gir1.2-freedesktop_1.70.0-2ubuntu1 gir1.2-glib-2.0_1.70.0-2ubuntu1 gir1.2-harfbuzz-0.0_2.7.4-1ubuntu2 gir1.2-pango-1.0_1.48.10+ds1-1 gpg_2.2.27-2ubuntu1 gpg-agent_2.2.27-2ubuntu1 gpgconf_2.2.27-2ubuntu1 gpgv_2.2.27-2ubuntu1 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4ubuntu2 hostname_3.23ubuntu1 icu-devtools_67.1-7ubuntu1 init_1.60build1 init-system-helpers_1.60build1 intltool-debian_0.35.0+20060710.5 java-common_0.72build1 libacl1_2.2.53-10ubuntu2 libapache-pom-java_18-1 libapparmor1_3.0.3-0ubuntu3 libapt-pkg6.0_2.3.11 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.2build22 libasan6_11.2.0-10ubuntu1 libasound2_1.2.4-1.1ubuntu4 libasound2-data_1.2.4-1.1ubuntu4 libassuan0_2.5.5-1 libatomic1_11.2.0-10ubuntu1 libattr1_1:2.5.1-1 libaudit-common_1:3.0-2ubuntu3 libaudit1_1:3.0-2ubuntu3 libavahi-client3_0.8-5ubuntu4 libavahi-common-data_0.8-5ubuntu4 libavahi-common3_0.8-5ubuntu4 libbinutils_2.37-7ubuntu1 libblas-dev_3.9.0-3ubuntu3 libblas3_3.9.0-3ubuntu3 libblkid-dev_2.37.2-4ubuntu1 libblkid1_2.37.2-4ubuntu1 libbrotli-dev_1.0.9-2build4 libbrotli1_1.0.9-2build4 libbsd0_0.11.3-1ubuntu3 libbz2-1.0_1.0.8-4ubuntu4 libbz2-dev_1.0.8-4ubuntu4 libc-bin_2.34-0ubuntu3 libc-dev-bin_2.34-0ubuntu3 libc6_2.34-0ubuntu3 libc6-dev_2.34-0ubuntu3 libcairo-gobject2_1.16.0-5ubuntu2 libcairo-script-interpreter2_1.16.0-5ubuntu2 libcairo2_1.16.0-5ubuntu2 libcairo2-dev_1.16.0-5ubuntu2 libcap-ng0_0.7.9-2.2build2 libcap2_1:2.44-1build2 libcc1-0_11.2.0-10ubuntu1 libcom-err2_1.46.4-1ubuntu1 libcommons-logging-java_1.2-2 libcommons-parent-java_43-1 libcrypt-dev_1:4.4.18-4ubuntu2 libcrypt1_1:4.4.18-4ubuntu2 libcryptsetup12_2:2.3.6-0ubuntu1 libctf-nobfd0_2.37-7ubuntu1 libctf0_2.37-7ubuntu1 libcups2_2.3.3op2-7ubuntu2 libcurl4_7.74.0-1.3ubuntu2 libcurl4-openssl-dev_7.74.0-1.3ubuntu2 libdatrie-dev_0.2.13-1ubuntu3 libdatrie1_0.2.13-1ubuntu3 libdb5.3_5.3.28+dfsg1-0.8ubuntu2 libdbus-1-3_1.12.20-2ubuntu2 libdebconfclient0_0.256ubuntu4 libdebhelper-perl_13.3.4ubuntu3 libdeflate-dev_1.7-2ubuntu2 libdeflate0_1.7-2ubuntu2 libdevmapper1.02.1_2:1.02.175-2.1ubuntu3 libdpkg-perl_1.20.9ubuntu2 libdrm-amdgpu1_2.4.107-8ubuntu1 libdrm-common_2.4.107-8ubuntu1 libdrm-nouveau2_2.4.107-8ubuntu1 libdrm-radeon1_2.4.107-8ubuntu1 libdrm2_2.4.107-8ubuntu1 libdw1_0.185-2 libedit2_3.1-20210910-1 libelf1_0.185-2 libexpat1_2.4.1-3 libexpat1-dev_2.4.1-3 libext2fs2_1.46.4-1ubuntu1 libfakeroot_1.25.3-1.1ubuntu3 libffi-dev_3.4.2-1ubuntu5 libffi8_3.4.2-1ubuntu5 libfile-stripnondeterminism-perl_1.12.0-2 libfontbox-java_1:1.8.16-2 libfontconfig-dev_2.13.1-4.2ubuntu4 libfontconfig1_2.13.1-4.2ubuntu4 libfontconfig1-dev_2.13.1-4.2ubuntu4 libfontenc1_1:1.1.4-1build2 libfreetype-dev_2.11.0+dfsg-1 libfreetype6_2.11.0+dfsg-1 libfreetype6-dev_2.11.0+dfsg-1 libfribidi-dev_1.0.8-2ubuntu2 libfribidi0_1.0.8-2ubuntu2 libgcc-11-dev_11.2.0-10ubuntu1 libgcc-s1_11.2.0-10ubuntu1 libgcrypt20_1.9.4-3ubuntu2 libgdbm-compat4_1.22-1 libgdbm6_1.22-1 libgfortran-11-dev_11.2.0-10ubuntu1 libgfortran5_11.2.0-10ubuntu1 libgif7_5.1.9-2build1 libgirepository-1.0-1_1.70.0-2ubuntu1 libgl1_1.3.4-2 libgl1-mesa-dri_21.2.2-1ubuntu1 libglapi-mesa_21.2.2-1ubuntu1 libglib2.0-0_2.70.1-1 libglib2.0-bin_2.70.1-1 libglib2.0-data_2.70.1-1 libglib2.0-dev_2.70.1-1 libglib2.0-dev-bin_2.70.1-1 libglvnd0_1.3.4-2 libglx-mesa0_21.2.2-1ubuntu1 libglx0_1.3.4-2 libgmp10_2:6.2.1+dfsg-1ubuntu3 libgnutls30_3.7.2-2ubuntu1 libgomp1_11.2.0-10ubuntu1 libgpg-error0_1.42-3 libgraphite2-3_1.3.14-1build1 libgraphite2-dev_1.3.14-1build1 libgssapi-krb5-2_1.18.3-7 libharfbuzz-dev_2.7.4-1ubuntu2 libharfbuzz-gobject0_2.7.4-1ubuntu2 libharfbuzz-icu0_2.7.4-1ubuntu2 libharfbuzz0b_2.7.4-1ubuntu2 libhogweed6_3.7.3-1build1 libice-dev_2:1.0.10-1build1 libice6_2:1.0.10-1build1 libicu-dev_67.1-7ubuntu1 libicu67_67.1-7ubuntu1 libidn2-0_2.3.2-2 libip4tc2_1.8.7-1ubuntu3 libisl23_0.24-2 libjbig-dev_2.1-3.1build2 libjbig0_2.1-3.1build2 libjpeg-dev_8c-2ubuntu8 libjpeg-turbo8_2.0.6-0ubuntu3 libjpeg-turbo8-dev_2.0.6-0ubuntu3 libjpeg8_8c-2ubuntu8 libjpeg8-dev_8c-2ubuntu8 libjs-jquery_3.5.1+dfsg+~3.5.5-8 libjson-c5_0.15-2build3 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2ubuntu2 libkmod2_28-1ubuntu4 libkpathsea6_2021.20210626.59705-1 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 liblapack-dev_3.9.0-3ubuntu3 liblapack3_3.9.0-3ubuntu3 liblcms2-2_2.12~rc1-2build1 libldap-2.5-0_2.5.6+dfsg-1~exp1ubuntu1 libllvm12_1:12.0.1-16 liblockfile-bin_1.17-1build1 liblockfile1_1.17-1build1 liblz4-1_1.9.3-2build1 liblzma-dev_5.2.5-2build1 liblzma5_5.2.5-2build1 liblzo2-2_2.10-2build2 libmagic-mgc_1:5.39-3build1 libmagic1_1:5.39-3build1 libmd0_1.0.4-1 libmime-charset-perl_1.012.2-1 libmount-dev_2.37.2-4ubuntu1 libmount1_2.37.2-4ubuntu1 libmpc3_1.2.1-1 libmpdec3_2.5.1-2build1 libmpfr6_4.1.0-3build2 libncurses-dev_6.2+20210905-1 libncurses5-dev_6.2+20210905-1 libncurses6_6.2+20210905-1 libncursesw6_6.2+20210905-1 libnettle8_3.7.3-1build1 libnghttp2-14_1.43.0-1build1 libnpth0_1.6-3build1 libnsl-dev_1.3.0-2build1 libnsl2_1.3.0-2build1 libnspr4_2:4.32-1 libnss3_2:3.68-1ubuntu1 libp11-kit0_0.24.0-5 libpam-modules_1.4.0-10ubuntu1 libpam-modules-bin_1.4.0-10ubuntu1 libpam-runtime_1.4.0-10ubuntu1 libpam0g_1.4.0-10ubuntu1 libpango-1.0-0_1.48.10+ds1-1 libpango1.0-dev_1.48.10+ds1-1 libpangocairo-1.0-0_1.48.10+ds1-1 libpangoft2-1.0-0_1.48.10+ds1-1 libpangoxft-1.0-0_1.48.10+ds1-1 libpaper-utils_1.1.28build1 libpaper1_1.1.28build1 libpcre16-3_2:8.39-13build4 libpcre2-16-0_10.37-0ubuntu2 libpcre2-32-0_10.37-0ubuntu2 libpcre2-8-0_10.37-0ubuntu2 libpcre2-dev_10.37-0ubuntu2 libpcre2-posix3_10.37-0ubuntu2 libpcre3_2:8.39-13build4 libpcre3-dev_2:8.39-13build4 libpcre32-3_2:8.39-13build4 libpcrecpp0v5_2:8.39-13build4 libpcsclite1_1.9.4-1 libpdfbox-java_1:1.8.16-2 libperl5.32_5.32.1-3ubuntu3 libpipeline1_1.5.4-1 libpixman-1-0_0.40.0-1build3 libpixman-1-dev_0.40.0-1build3 libpng-dev_1.6.37-3build4 libpng16-16_1.6.37-3build4 libprocps8_2:3.3.17-5ubuntu3 libpsl5_0.21.0-1.2build1 libptexenc1_2021.20210626.59705-1 libpthread-stubs0-dev_0.4-1build1 libpython3-stdlib_3.9.7-4 libpython3.9-minimal_3.9.8-1 libpython3.9-stdlib_3.9.8-1 libreadline-dev_8.1-2build1 libreadline8_8.1-2build1 librtmp1_2.4+20151223.gitfa8646d.1-2build3 libsasl2-2_2.1.27+dfsg-2.3 libsasl2-modules-db_2.1.27+dfsg-2.3 libseccomp2_2.5.1-1ubuntu2 libselinux1_3.1-3build3 libselinux1-dev_3.1-3build3 libsemanage-common_3.1-1ubuntu3 libsemanage1_3.1-1ubuntu3 libsensors-config_1:3.6.0-7build1 libsensors5_1:3.6.0-7build1 libsepol1_3.1-1ubuntu2 libsepol1-dev_3.1-1ubuntu2 libsigsegv2_2.13-1ubuntu2 libsm-dev_2:1.2.3-1build1 libsm6_2:1.2.3-1build1 libsmartcols1_2.37.2-4ubuntu1 libsombok3_2.4.0-2 libsqlite3-0_3.36.0-2 libss2_1.46.4-1ubuntu1 libssh-4_0.9.6-1 libssl1.1_1.1.1l-1ubuntu1 libstdc++-11-dev_11.2.0-10ubuntu1 libstdc++6_11.2.0-10ubuntu1 libsub-override-perl_0.09-2 libsynctex2_2021.20210626.59705-1 libsystemd0_248.3-1ubuntu8 libtasn1-6_4.17.0-2 libtcl8.6_8.6.12+dfsg-1 libteckit0_2.5.10+ds1-3 libtexlua53_2021.20210626.59705-1 libtext-unidecode-perl_1.30-1 libthai-data_0.1.28-4.1 libthai-dev_0.1.28-4.1 libthai0_0.1.28-4.1 libtiff-dev_4.3.0-2 libtiff5_4.3.0-2 libtiff5-dev_4.3.0-2 libtiffxx5_4.3.0-2 libtinfo6_6.2+20210905-1 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtk8.6_8.6.12-1 libtool_2.4.6-15build1 libuchardet0_0.0.7-1build1 libudev1_248.3-1ubuntu8 libunicode-linebreak-perl_0.0.20190101-1build2 libunistring2_0.9.10-6 libuuid1_2.37.2-4ubuntu1 libvulkan1_1.2.189.0-2 libwebp6_0.6.1-2.1build1 libx11-6_2:1.7.2-2 libx11-data_2:1.7.2-2 libx11-dev_2:1.7.2-2 libx11-xcb1_2:1.7.2-2 libxau-dev_1:1.0.9-1build4 libxau6_1:1.0.9-1build4 libxaw7_2:1.0.13-1.1build1 libxcb-dri2-0_1.14-3ubuntu2 libxcb-dri3-0_1.14-3ubuntu2 libxcb-glx0_1.14-3ubuntu2 libxcb-present0_1.14-3ubuntu2 libxcb-render0_1.14-3ubuntu2 libxcb-render0-dev_1.14-3ubuntu2 libxcb-shm0_1.14-3ubuntu2 libxcb-shm0-dev_1.14-3ubuntu2 libxcb-sync1_1.14-3ubuntu2 libxcb-xfixes0_1.14-3ubuntu2 libxcb1_1.14-3ubuntu2 libxcb1-dev_1.14-3ubuntu2 libxdmcp-dev_1:1.1.3-0ubuntu4 libxdmcp6_1:1.1.3-0ubuntu4 libxext-dev_2:1.3.4-0ubuntu4 libxext6_2:1.3.4-0ubuntu4 libxfixes3_1:5.0.3-2build2 libxfont2_1:2.0.4-1build3 libxft-dev_2.3.3-0ubuntu4 libxft2_2.3.3-0ubuntu4 libxi6_2:1.8-1 libxkbfile1_1:1.1.0-1build2 libxml-libxml-perl_2.0134+dfsg-2build2 libxml-namespacesupport-perl_1.12-1.1 libxml-sax-base-perl_1.09-1.1 libxml-sax-perl_1.02+dfsg-3 libxml2_2.9.12+dfsg-5 libxmu6_2:1.1.3-0ubuntu2 libxmuu1_2:1.1.3-0ubuntu2 libxpm4_1:3.5.12-1build1 libxrender-dev_1:0.9.10-1build3 libxrender1_1:0.9.10-1build3 libxshmfence1_1.3-1build3 libxss-dev_1:1.2.3-1build1 libxss1_1:1.2.3-1build1 libxt-dev_1:1.2.0-1build1 libxt6_1:1.2.0-1build1 libxtst6_2:1.2.3-1build3 libxxf86vm1_1:1.1.4-1build2 libxxhash0_0.8.0-2build1 libzstd1_1.4.8+dfsg-3 libzzip-0-13_0.13.72+dfsg.1-1.1 linux-libc-dev_5.13.0-19.19 lmodern_2.004.5-6.1 lockfile-progs_0.1.19 login_1:4.8.1-1ubuntu9 logsave_1.46.4-1ubuntu1 lsb-base_11.1.0ubuntu3 lto-disabled-list_16 m4_1.4.18-5ubuntu1 make_4.3-4ubuntu2 man-db_2.9.4-2build1 mawk_1.3.4.20200120-2build1 media-types_4.0.0 mount_2.37.2-4ubuntu1 mpack_1.6-18 ncurses-base_6.2+20210905-1 ncurses-bin_6.2+20210905-1 openjdk-11-jdk_11.0.13+8-0ubuntu1 openjdk-11-jdk-headless_11.0.13+8-0ubuntu1 openjdk-11-jre_11.0.13+8-0ubuntu1 openjdk-11-jre-headless_11.0.13+8-0ubuntu1 openssl_1.1.1l-1ubuntu1 optipng_0.7.7-2 pango1.0-tools_1.48.10+ds1-1 passwd_1:4.8.1-1ubuntu9 patch_2.7.6-7build1 perl_5.32.1-3ubuntu3 perl-base_5.32.1-3ubuntu3 perl-modules-5.32_5.32.1-3ubuntu3 pinentry-curses_1.1.1-1build1 pkg-config_0.29.2-1ubuntu2 pkgbinarymangler_149 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3 preview-latex-style_12.2-1ubuntu1 procps_2:3.3.17-5ubuntu3 python3_3.9.7-4 python3-distutils_3.9.7-1 python3-lib2to3_3.9.7-1 python3-minimal_3.9.7-4 python3.9_3.9.8-1 python3.9-minimal_3.9.8-1 readline-common_8.1-2build1 rpcsvc-proto_1.4.2-0ubuntu5 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1ubuntu2 sensible-utils_0.0.17 systemd_248.3-1ubuntu8 systemd-sysv_248.3-1ubuntu8 systemd-timesyncd_248.3-1ubuntu8 sysvinit-utils_2.96-7ubuntu2 t1utils_1.41-4build1 tar_1.34+dfsg-1build2 tcl8.6_8.6.12+dfsg-1 tcl8.6-dev_8.6.12+dfsg-1 tex-common_6.17 texinfo_6.7.0.dfsg.2-6build1 texlive-base_2021.20210921-1 texlive-binaries_2021.20210626.59705-1 texlive-extra-utils_2021.20210921-1 texlive-fonts-extra_2021.20210921-1 texlive-fonts-recommended_2021.20210921-1 texlive-latex-base_2021.20210921-1 texlive-latex-extra_2021.20210921-1 texlive-latex-recommended_2021.20210921-1 texlive-luatex_2021.20210921-1 texlive-pictures_2021.20210921-1 texlive-plain-generic_2021.20210921-1 tk8.6_8.6.12-1 tk8.6-dev_8.6.12-1 tzdata_2021e-1ubuntu1 ubuntu-keyring_2021.03.26 ucf_3.0043 usrmerge_25ubuntu2 util-linux_2.37.2-4ubuntu1 uuid-dev_2.37.2-4ubuntu1 x11-common_1:7.7+23ubuntu1 x11-xkb-utils_7.7+5build3 x11proto-core-dev_2021.5-1 x11proto-dev_2021.5-1 xauth_1:1.1-1build1 xdg-utils_1.1.3-2ubuntu2 xfonts-base_1:1.0.5 xfonts-encodings_1:1.0.5-0ubuntu1 xfonts-utils_1:7.7+6build1 xkb-data_2.33-1 xorg-sgml-doctools_1:1.11-1.1 xserver-common_2:1.20.13-1ubuntu1 xtrans-dev_1.4.0-1 xvfb_2:1.20.13-1ubuntu1 xz-utils_5.2.5-2build1 zlib1g_1:1.2.11.dfsg-2ubuntu7 zlib1g-dev_1:1.2.11.dfsg-2ubuntu7 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-base Binary: r-base, r-base-core, r-base-dev, r-mathlib, r-base-html, r-doc-pdf, r-doc-html, r-doc-info, r-recommended, r-base-core-dbg Architecture: any all Version: 4.1.2-1ubuntu1 Maintainer: Ubuntu Developers Homepage: http://www.r-project.org/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/edd/r-base Vcs-Git: https://salsa.debian.org/edd/r-base.git Build-Depends: gcc (>= 4:4.9.2-2), g++ (>= 4:4.9.2-2), gfortran (>= 4:4.9.2-2), libblas-dev, liblapack-dev, tcl8.6-dev, tk8.6-dev, bison, groff-base, libncurses5-dev, libreadline-dev, debhelper-compat (= 11), texinfo (>= 4.1-2), libbz2-dev, liblzma-dev, libpcre2-dev, libpcre3-dev, libcurl4-openssl-dev | libcurl4-dev, xdg-utils, zlib1g-dev, libpng-dev, libjpeg-dev, libx11-dev, libxt-dev, x11proto-core-dev, libpango1.0-dev, libcairo2-dev, libtiff5-dev, xvfb, xauth, xfonts-base, texlive-base, texlive-latex-base, texlive-plain-generic, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, default-jdk [!arm !hppa !kfreebsd-i386 !kfreebsd-amd64 !hurd-i386] | openjdk-10-jdk [!arm !hppa !kfreebsd-i386 !kfreebsd-amd64 !hurd-i386], mpack, bash-completion Package-List: r-base deb gnu-r optional arch=all r-base-core deb gnu-r optional arch=any r-base-core-dbg deb debug optional arch=any r-base-dev deb gnu-r optional arch=all r-base-html deb doc optional arch=all r-doc-html deb doc optional arch=all r-doc-info deb doc optional arch=all r-doc-pdf deb doc optional arch=all r-mathlib deb gnu-r optional arch=any r-recommended deb gnu-r optional arch=all Checksums-Sha1: a0a305a899286488a3392b581779acff58cae01a 34009074 r-base_4.1.2.orig.tar.gz 638e373a052876f567e4d8fdb5a005bf2280f828 97632 r-base_4.1.2-1ubuntu1.debian.tar.xz Checksums-Sha256: 2036225e9f7207d4ce097e54972aecdaa8b40d7d9911cd26491fac5a0fab38af 34009074 r-base_4.1.2.orig.tar.gz 7351e877a29ab68dc1e87798ae5ddc868c356bd8fdf94b76a54e63d67c12cb17 97632 r-base_4.1.2-1ubuntu1.debian.tar.xz Files: 6e28db9d02c6d3dae51a149b8e261ab1 34009074 r-base_4.1.2.orig.tar.gz 63d1acf4726ded91aaf203a65a2ea07d 97632 r-base_4.1.2-1ubuntu1.debian.tar.xz Original-Maintainer: Dirk Eddelbuettel -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEE7iQKBSojGtiSWEHXm47ISdXvcO0FAmGKcUUACgkQm47ISdXv cO0nTRAAp0l8i18gxMiPBd0+HHiLNMjf3fpPptnuuCvpGMwAzhrd6rYfIczaOUf9 I42QqQ0QWSt52XbUASr8o9A8hTxGqS5dolUusjk3MKJqGLKswUGHtXoHBCspYLPd 6rQCwZIXAx/j0VfsD7zozlyUkeAH59TFtEKNN3q+PgRvglfNTEdMsYBQtu0zoGlm FDmhFxCoF/kgQpQf9cllnSY/fQTz+b6id5A3rk8JaMeriit9hHkxZkvVVXMoD8gr 2IWx9LuBCh/TjXNETHIYS621Sfh0iLySyNS9Nc0ERT51fdGOx2Hy9um4XVz/JiML bLjd8vB3fN5JvaTsq187b11JM8JJHb07TI91rcZo5LKyZcFt/GCKEgfQdqBclmvy 2eJSWILXU5GXn0DL4eQo3yY8afXhrv30b3ZPsM9rj//bli8vqe6ikJxMzS1bwCZP I5SP/Ul/nJ8hxWx2S8AC0SrywFq5W80EUrhnrksCSmnMalw1L/6XgSuIqxR7x9zA 5cwmFgbhwPyvb4A/Y7Q+cCTapRg8hyfUuNj9O/o8wpuTqiTYBjRLnarRLmUkk2SJ 2FsnYtWPKfZI6c4zMWBpTIHkT60ifJ899dBhRcD9kPDge8A3bKjPb/MtmJuKpWCr 4dBh1VAIyMzn7DDHgumJvBaz4PoPtcGDb3gGyXsNKB213QrUpj0= =YDH1 -----END PGP SIGNATURE----- gpgv: Signature made Tue Nov 9 13:01:57 2021 UTC gpgv: using RSA key EE240A052A231AD8925841D79B8EC849D5EF70ED gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-base_4.1.2-1ubuntu1.dsc dpkg-source: info: extracting r-base in /<> dpkg-source: info: unpacking r-base_4.1.2.orig.tar.gz dpkg-source: info: unpacking r-base_4.1.2-1ubuntu1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=8 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-22387473 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-22387473 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-22387473 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package r-base dpkg-buildpackage: info: source version 4.1.2-1ubuntu1 dpkg-buildpackage: info: source distribution jammy dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 fakeroot debian/rules clean *** clean *** dh_testdir dh_testroot rm -f configure-stamp \ build-stamp build-indep-stamp build-arch-stamp \ make-stamp make-arch-stamp make-indep-stamp \ install-indep-stamp install-arch-stamp \ check-stamp [ ! -f Makefile ] || /usr/bin/make distclean rm -f `find . -name "*~"` rm -rf debian/tmp debian/files* core debian/substvars rm -f doc/html/function.html doc/html/packages.html rm -f modules/*.so src/unix/Rscript dh_clean debian/rules build-arch *** configure *** #automake #autoconf dh_testdir R_SHELL=/bin/bash \ mkdir_p="/bin/mkdir -p" \ MKDIR_P="/bin/mkdir -p" \ R_TEXI2DVICMD=emulation \ R_PAPERSIZE=letter \ R_BROWSER=xdg-open \ R_BZIPCMD=/bin/bzip2 \ R_GZIPCMD="/bin/gzip -n" \ PAGER=/usr/bin/pager \ PERL=/usr/bin/perl \ JAVA_HOME=/usr/lib/jvm/default-java \ R_UNZIPCMD=/usr/bin/unzip \ R_ZIPCMD=/usr/bin/zip \ R_PRINTCMD=/usr/bin/lpr \ TAR=/bin/tar \ LIBnn=lib \ AWK=/usr/bin/awk \ DD=/bin/dd \ GREP=/bin/grep \ FGREP="/bin/grep -F" \ EGREP="/bin/grep -E" \ SED=/bin/sed \ GETWD="/bin/pwd" \ CC=gcc \ CXX=g++ \ F77=gfortran \ FC=gfortran \ CFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g" \ CXXFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g" \ FFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong" \ FCFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong" \ CPPFLAGS= \ LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro" \ FLIBS= \ rsharedir=/usr/share/R/share \ rincludedir=/usr/share/R/include \ rdocdir=/usr/share/R/doc \ ./configure --prefix=/usr \ --with-cairo \ --with-jpeglib \ --with-readline \ --with-tcltk \ --with-system-bzlib \ --with-system-pcre \ --with-system-zlib \ --mandir=/usr/share/man \ --infodir=/usr/share/info \ --datadir=/usr/share/R/share \ --includedir=/usr/share/R/include \ --with-blas \ --with-lapack \ --enable-long-double \ --enable-R-profiling \ --enable-R-shlib \ --enable-memory-profiling \ --without-recommended-packages \ --build riscv64-linux-gnu configure: WARNING: unrecognized options: --with-system-bzlib, --with-system-pcre, --with-system-zlib checking build system type... riscv64-unknown-linux-gnu checking host system type... riscv64-unknown-linux-gnu loading site script './config.site' loading build-specific script './config.site' checking for pwd... /bin/pwd checking whether builddir is srcdir... yes checking whether ln -s works... yes checking for ar... ar checking for a BSD-compatible install... /usr/bin/install -c checking for sed... /bin/sed checking for which... /usr/bin/which checking for /usr/bin/pager... /usr/bin/pager checking for /bin/tar... /bin/tar checking for tex... /usr/bin/tex checking for pdftex... /usr/bin/pdftex checking for pdflatex... /usr/bin/pdflatex checking for makeindex... /usr/bin/makeindex checking for texi2any... /usr/bin/texi2any checking whether texi2any version is at least 5.1... yes checking for ginstall-info... no checking for install-info... no checking for texi2dvi... /usr/bin/texi2dvi checking for kpsewhich... /usr/bin/kpsewhich checking for latex inconsolata package... found zi4.sty checking for unzip... /usr/bin/unzip checking for zip... /usr/bin/zip checking for gzip... /bin/gzip -n checking for bzip2... /bin/bzip2 using default browser ... xdg-open checking for acroread... no checking for acroread4... no checking for xdg-open... /usr/bin/xdg-open checking for working aclocal... found checking for working autoconf... found checking for working autoheader... found checking for bison... bison -y checking for notangle... false checking for realpath... /usr/bin/realpath checking for pkg-config... /usr/bin/pkg-config checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking whether gcc needs -traditional... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for wchar.h... yes checking for minix/config.h... no checking for sys/time.h... yes checking for sys/param.h... yes checking whether it is safe to define __EXTENSIONS__... yes checking whether _XOPEN_SOURCE should be defined... no checking how to run the C preprocessor... gcc -E looking for a modern Fortran compiler checking whether the compiler supports GNU Fortran... yes checking whether gfortran accepts -g... yes checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking whether g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g can compile C++ code... yes checking how to run the C++ preprocessor... g++ -E checking whether __attribute__((visibility())) is supported... yes checking whether gcc accepts -fvisibility... yes checking whether g++ accepts -fvisibility... yes checking whether gfortran accepts -fvisibility... yes checking for gcc... gcc checking whether the compiler supports GNU Objective C... no checking whether gcc accepts -g... no checking whether g++ can compile ObjC++... no checking whether can compile ObjC++... no checking for Objective C++ compiler... no working ObjC++ compiler found checking how to print strings... printf checking for a sed that does not truncate output... (cached) /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert riscv64-unknown-linux-gnu file names to riscv64-unknown-linux-gnu format... func_convert_file_noop checking how to convert riscv64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking for gawk... /usr/bin/awk checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... no checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for cos in -lm... yes checking for sin in -lm... yes checking for dlopen in -ldl... yes checking for readline/history.h... yes checking for readline/readline.h... yes checking for rl_callback_read_char in -lreadline... yes checking for history_truncate_file... yes checking for tilde_expand_word... yes checking whether rl_completion_matches exists and is declared... yes checking whether rl_resize_terminal exists and is declared... yes checking whether rl_sort_completion_matches exists and is declared... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for sys/wait.h that is POSIX.1 compatible... yes checking for dlfcn.h... (cached) yes checking for fcntl.h... yes checking for glob.h... yes checking for grp.h... yes checking for pwd.h... yes checking for sched.h... yes checking for strings.h... (cached) yes checking for sys/resource.h... yes checking for sys/select.h... yes checking for sys/socket.h... yes checking for sys/stat.h... (cached) yes checking for sys/time.h... (cached) yes checking for sys/times.h... yes checking for sys/utsname.h... yes checking for unistd.h... (cached) yes checking for utime.h... yes checking for arpa/inet.h... yes checking for elf.h... yes checking for features.h... yes checking for floatingpoint.h... no checking for langinfo.h... yes checking for netdb.h... yes checking for netinet/in.h... yes checking for sys/param.h... (cached) yes checking for stdalign.h... yes checking for errno.h... yes checking for inttypes.h... (cached) yes checking for limits.h... yes checking for locale.h... yes checking for stdarg.h... yes checking for stdbool.h... yes checking for stdint.h... (cached) yes checking for string.h... (cached) yes checking for gcc options needed to detect all undeclared functions... none needed checking whether setjmp.h is POSIX.1 compatible... yes checking whether sigsetjmp is declared... yes checking whether siglongjmp is declared... yes checking for GNU C library with version >= 2... yes checking for uint64_t... yes checking for int64_t... yes checking for int_fast64_t... yes checking for pid_t... yes checking for size_t... yes checking whether SIZE_MAX is declared... yes checking for blkcnt_t... yes checking for type of socket length... socklen_t * checking for stack_t... yes checking for intptr_t... yes checking for uintptr_t... yes checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for inline... inline checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of double... 8 checking size of size_t... 8 checking for C stack direction... down checking size of long double... 16 checking whether we can compute C Make dependencies... yes, using $(CC) -MM checking whether gcc supports -c -o FILE.lo... yes checking for gcc option to support OpenMP... -fopenmp checking how to get verbose linking output from gfortran... -v checking for Fortran libraries of gfortran... -L/usr/lib/gcc/riscv64-linux-gnu/11 -L/lib/riscv64-linux-gnu -L/usr/lib/riscv64-linux-gnu -lgfortran -lm checking how to get verbose linking output from gcc... -v checking for C libraries of gcc... -L/usr/lib/gcc/riscv64-linux-gnu/11 -L/lib/riscv64-linux-gnu -L/usr/lib/riscv64-linux-gnu -lgcc_s checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking whether gfortran appends underscores to external names... yes checking whether gfortran appends extra underscores to external names... no checking whether mixed C/Fortran code can be run... yes checking whether gfortran and gcc agree on int and double... yes checking whether gfortran and gcc agree on double complex... yes checking for gfortran option to support OpenMP... -fopenmp checking whether g++ accepts -M for generating dependencies... yes checking whether we can compute ObjC Make dependencies... no checking if need -fno-optimize-sibling-calls for gfortran... yes checking for type of 'hidden' Fortran character lengths... size_t checking for xmkmf... no checking whether g++ supports C++11 features with -std=gnu++11... yes checking whether g++ supports C++14 features with -std=gnu++14... yes checking whether g++ supports C++17 features with -std=gnu++17... yes checking whether g++ supports C++20 features with -std=gnu++20... yes checking for g++ -std=gnu++14 option to support OpenMP... -fopenmp checking for option providing pthread_kill... none required checking whether POSIX threads are supported... yes checking for off_t... yes checking for working alloca.h... yes checking for alloca... yes checking whether alloca is declared... yes checking whether expm1 exists and is declared... yes checking whether hypot exists and is declared... yes checking whether log1p exists and is declared... yes checking whether log1pl exists and is declared... yes checking whether log2 exists and is declared... yes checking whether log10 exists and is declared... yes checking whether nearbyint exists and is declared... yes checking whether nearbyintl exists and is declared... yes checking whether powl exists and is declared... yes checking whether rintl exists and is declared... yes checking whether va_copy exists and is declared... yes checking for isblank... yes checking for sunmath.h... no checking for cospi in -lsunmath... no checking for atanpi... no checking for atan2pi... no checking for cospi... no checking for exp10... yes checking for pown... no checking for sinpi... no checking for tanpi... no checking for __cospi... no checking for __sinpi... no checking for __tanpi... no checking for fseeko... yes checking for ftello... yes checking for matherr... no checking whether fcntl exists and is declared... yes checking whether getgrgid exists and is declared... yes checking whether getpwnam exists and is declared... yes checking whether getpwuid exists and is declared... yes checking whether kill exists and is declared... yes checking whether sigaction exists and is declared... yes checking whether sigaltstack exists and is declared... yes checking whether sigemptyset exists and is declared... yes checking whether fdopen exists and is declared... yes checking whether popen exists and is declared... yes checking whether getline exists and is declared... yes checking whether select exists and is declared... yes checking whether setenv exists and is declared... yes checking whether unsetenv exists and is declared... yes checking whether getrlimit exists and is declared... yes checking whether setrlimit exists and is declared... yes checking whether getrusage exists and is declared... yes checking whether getpriority exists and is declared... yes checking whether chmod exists and is declared... yes checking whether mkfifo exists and is declared... yes checking whether stat exists and is declared... yes checking whether umask exists and is declared... yes checking whether gettimeofday exists and is declared... yes checking whether utimes exists and is declared... yes checking whether times exists and is declared... yes checking whether gmtime_r exists and is declared... yes checking whether localtime_r exists and is declared... yes checking whether nl_langinfo exists and is declared... yes checking whether access exists and is declared... yes checking whether chdir exists and is declared... yes checking whether execv exists and is declared... yes checking whether ftruncate exists and is declared... yes checking whether getcwd exists and is declared... yes checking whether geteuid exists and is declared... yes checking whether getuid exists and is declared... yes checking whether link exists and is declared... yes checking whether readlink exists and is declared... yes checking whether symlink exists and is declared... yes checking whether sysconf exists and is declared... yes checking whether sched_setaffinity exists and is declared... yes checking whether sched_getaffinity exists and is declared... yes checking whether utime exists and is declared... yes checking whether utimensat exists and is declared... yes checking for clock_gettime in -lrt... yes checking whether clock_gettime exists and is declared... yes checking whether timespec_get exists and is declared... yes checking for putenv... yes checking whether putenv is declared... yes checking for vasprintf... yes checking whether vasprintf is declared... yes checking for mempcpy... yes checking for realpath... yes checking whether realpath is declared... yes checking whether glob exists and is declared... yes checking for dladdr... yes checking for dlsym... yes checking whether dladdr is declared... yes checking whether dlsym is declared... yes checking whether RTLD_DEFAULT is declared... yes checking whether RTLD_NEXT is declared... yes checking for thread.h... no checking whether thr_stksegment exists and is declared... no checking for isnan... yes checking whether isfinite is declared... yes checking whether isnan is declared... yes checking whether you have IEEE 754 floating-point arithmetic... yes checking whether putenv("FOO") can unset an environment variable... yes checking whether putenv("FOO=") can unset an environment variable... no checking for nl_langinfo and CODESET... yes checking for mkdtemp... yes checking for strdup... yes checking for strncasecmp... yes checking whether mkdtemp is declared... yes checking whether strdup is declared... yes checking whether strncasecmp is declared... yes checking for library containing connect... none required checking for library containing gethostbyname... none required checking for library containing xdr_string... -ltirpc checking for working calloc... yes checking for working isfinite... yes checking for working log1p... yes checking whether ftell works correctly on files opened for append... yes checking for working sigaction... yes checking whether mktime sets errno... no checking whether mktime works correctly outside 1902-2037... yes checking for complex.h... yes checking for double complex... yes checking whether C99 double complex is supported... yes checking whether cabs exists and is declared... yes checking whether carg exists and is declared... yes checking whether cexp exists and is declared... yes checking whether clog exists and is declared... yes checking whether csqrt exists and is declared... yes checking whether cpow exists and is declared... yes checking whether ccos exists and is declared... yes checking whether csin exists and is declared... yes checking whether ctan exists and is declared... yes checking whether cacos exists and is declared... yes checking whether casin exists and is declared... yes checking whether catan exists and is declared... yes checking whether ccosh exists and is declared... yes checking whether csinh exists and is declared... yes checking whether ctanh exists and is declared... yes checking for working ctanh... yes checking whether 'struct tm' includes tm_zone... yes checking whether 'struct tm' includes tm_gmtoff... yes configure: searching for an external BLAS configure: searching for BLAS in default libraries checking for dgemm_... no configure: searching for OpenBLAS checking for sgemm_ in -lopenblas... no configure: searching for ATLAS checking for ATL_xerbla in -latlas... no configure: searching for PhiPACK checking for dgemm_ in -lblas... yes checking for dgemm_ in -ldgemm... no configure: searching for IBM ESSL checking for dgemm_ in -lblas... (cached) yes checking for dgemm_ in -lessl... no configure: searching for generic BLAS library checking for dgemm_ in -lblas... (cached) yes checking whether double complex BLAS can be used... yes checking whether the BLAS is complete... yes checking for dpstrf_... no checking for dpstrf_ in -llapack... yes checking for iconv.h... yes checking for iconv... yes checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes checking whether iconv accepts "CP1252"... yes checking for iconvlist... no checking for iconv... yes checking for iconv declaration... extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for wchar.h... (cached) yes checking for wctype.h... yes checking whether mbrtowc exists and is declared... yes checking whether wcrtomb exists and is declared... yes checking whether wcscoll exists and is declared... yes checking whether wcsftime exists and is declared... yes checking whether wcstod exists and is declared... yes checking whether mbstowcs exists and is declared... yes checking whether wcstombs exists and is declared... yes checking whether wctrans exists and is declared... yes checking whether wctype exists and is declared... yes checking whether iswctype exists and is declared... yes checking whether wcwidth exists and is declared... yes checking whether wcswidth exists and is declared... yes checking for wctrans_t... yes checking for mbstate_t... yes checking for ICU... yes checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking for X11/Intrinsic.h... yes checking for XtToolkitInitialize in -lXt... yes using X11 ... yes checking for KeySym... yes checking for X11/Xmu/Atoms.h... no checking whether pkg-config knows about cairo and pango... yes checking whether cairo including pango is >= 1.2 and works... yes checking for tclConfig.sh... no checking for tclConfig.sh in library (sub)directories... /usr/lib/tcl8.6/tclConfig.sh checking for tkConfig.sh... no checking for tkConfig.sh in library (sub)directories... /usr/lib/tk8.6/tkConfig.sh checking for tcl.h... yes checking for tk.h... yes checking whether compiling/linking Tcl/Tk code works... yes checking for BSD networking... yes checking for rpc/types.h... no checking for tirpc/rpc/types.h... yes checking for tirpc/rpc/xdr.h... yes checking for XDR support... yes checking for inflateInit2_ in -lz... yes checking for zlib.h... yes checking if zlib version >= 1.2.5... yes checking whether zlib support suffices... yes checking for BZ2_bzlibVersion in -lbz2... yes checking for bzlib.h... yes checking if bzip2 version >= 1.0.6... yes checking whether bzip2 support suffices... yes checking for lzma_version_number in -llzma... yes checking for lzma.h... yes checking if lzma version >= 5.0.3... yes checking for pcre2.h... yes checking for pcre2_compile_8 in -lpcre2-8... yes checking if PCRE2 has Unicode support... yes checking whether PCRE support suffices... yes checking for curl-config... /usr/bin/curl-config checking libcurl version ... 7.74.0 checking for curl/curl.h... yes checking if libcurl is version 7 and >= 7.28.0... yes checking if libcurl supports https... yes checking if pkg-config knows about libjpeg... yes checking if jpeglib version >= 6b... yes checking for jpeg_destroy_compress in -ljpeg... yes checking if pkg-config knows about libpng... yes checking if libpng version >= 1.2.7... yes checking for png_create_write_struct in -lpng... yes checking if pkg-config knows about libtiff... yes checking for tiffio.h... yes checking for TIFFOpen in -ltiff... yes checking whether leap seconds are treated according to POSIX... yes checking for inline... inline checking for struct stat.st_atim.tv_nsec... yes checking whether struct stat.st_atim is of type struct timespec... yes checking for setitimer... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for _LARGEFILE_SOURCE value needed for large files... no checking whether KERN_USRSTACK sysctl is supported... no checking for visible __lib_stack_end... yes checking for paperconf... /usr/bin/paperconf checking for Fortran flag to compile .f90 files... none checking for Fortran flag to compile .f95 files... none checking for gfortran option to support OpenMP... (cached) -fopenmp checking whether NLS is requested... yes Configuring src/extra/intl directory checking for a race-free mkdir -p... /bin/mkdir -p checking whether we are using the GNU C Library 2 or newer... yes checking for ranlib... (cached) ranlib checking for simple visibility declarations... yes checking for stdint.h... yes checking for getpagesize... yes checking for working mmap... yes checking whether integer division by zero raises SIGFPE... no checking for inttypes.h... yes checking for unsigned long long int... yes checking for inttypes.h... (cached) yes checking whether the inttypes.h PRIxNN macros are broken... no checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for shared library run path origin... done checking whether imported symbols can be declared weak... yes checking for multithread API to use... none checking for argz.h... yes checking for inttypes.h... (cached) yes checking for limits.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... (cached) yes checking for getcwd... yes checking for getegid... yes checking for geteuid... yes checking for getgid... yes checking for getuid... yes checking for mempcpy... (cached) yes checking for munmap... yes checking for stpcpy... yes checking for strcasecmp... yes checking for strdup... (cached) yes checking for strtoul... yes checking for tsearch... yes checking for argz_count... yes checking for argz_stringify... yes checking for argz_next... yes checking for __fsetlocking... yes checking whether feof_unlocked is declared... yes checking whether fgets_unlocked is declared... yes checking for iconv... (cached) yes checking for iconv declaration... (cached) extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for NL_LOCALE_NAME macro... yes checking for bison... bison checking version of bison... 3.8.2, ok checking for long long int... yes checking for long double... yes checking for wchar_t... yes checking for wint_t... yes checking for intmax_t... yes checking whether printf() supports POSIX/XSI format strings... yes checking whether we are using the GNU C Library 2.1 or newer... yes checking for stdint.h... (cached) yes checking for SIZE_MAX... yes checking for stdint.h... (cached) yes checking for CFPreferencesCopyAppValue... no checking for CFLocaleCopyCurrent... no checking for ptrdiff_t... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for asprintf... yes checking for fwprintf... yes checking for putenv... (cached) yes checking for setenv... yes checking for setlocale... yes checking for snprintf... yes checking for wcslen... yes checking whether _snprintf is declared... no checking whether _snwprintf is declared... no checking whether getc_unlocked is declared... yes checking for nl_langinfo and CODESET... (cached) yes checking for LC_MESSAGES... yes checking for CFPreferencesCopyAppValue... (cached) no checking for CFLocaleCopyCurrent... (cached) no checking whether included gettext is requested... no checking for GNU gettext in libc... yes checking whether to use NLS... yes checking where the gettext function comes from... libc Finished configuring src/extra/intl directory checking whether OpenMP SIMD reduction is supported... yes using as R_SHELL for scripts ... /bin/bash configure: creating ./config.status config.status: creating Makeconf config.status: creating Makefile config.status: creating doc/Makefile config.status: creating doc/html/Makefile config.status: creating doc/manual/Makefile config.status: creating etc/Makefile config.status: creating etc/Makeconf config.status: creating etc/Renviron config.status: creating etc/javaconf config.status: creating etc/ldpaths config.status: creating m4/Makefile config.status: creating po/Makefile config.status: creating share/Makefile config.status: creating src/Makefile config.status: creating src/appl/Makefile config.status: creating src/extra/Makefile config.status: creating src/extra/blas/Makefile config.status: creating src/extra/intl/Makefile config.status: creating src/extra/tre/Makefile config.status: creating src/extra/tzone/Makefile config.status: creating src/extra/xdr/Makefile config.status: creating src/include/Makefile config.status: creating src/include/Rmath.h0 config.status: creating src/include/R_ext/Makefile config.status: creating src/library/Recommended/Makefile config.status: creating src/library/Makefile config.status: creating src/library/base/DESCRIPTION config.status: creating src/library/base/Makefile config.status: creating src/library/compiler/DESCRIPTION config.status: creating src/library/compiler/Makefile config.status: creating src/library/datasets/DESCRIPTION config.status: creating src/library/datasets/Makefile config.status: creating src/library/graphics/DESCRIPTION config.status: creating src/library/graphics/Makefile config.status: creating src/library/graphics/src/Makefile config.status: creating src/library/grDevices/DESCRIPTION config.status: creating src/library/grDevices/Makefile config.status: creating src/library/grDevices/src/Makefile config.status: creating src/library/grDevices/src/cairo/Makefile config.status: creating src/library/grid/DESCRIPTION config.status: creating src/library/grid/Makefile config.status: creating src/library/grid/src/Makefile config.status: creating src/library/methods/DESCRIPTION config.status: creating src/library/methods/Makefile config.status: creating src/library/methods/src/Makefile config.status: creating src/library/parallel/DESCRIPTION config.status: creating src/library/parallel/Makefile config.status: creating src/library/parallel/src/Makefile config.status: creating src/library/profile/Makefile config.status: creating src/library/stats/DESCRIPTION config.status: creating src/library/stats/Makefile config.status: creating src/library/stats/src/Makefile config.status: creating src/library/stats4/DESCRIPTION config.status: creating src/library/stats4/Makefile config.status: creating src/library/splines/DESCRIPTION config.status: creating src/library/splines/Makefile config.status: creating src/library/splines/src/Makefile config.status: creating src/library/tcltk/DESCRIPTION config.status: creating src/library/tcltk/Makefile config.status: creating src/library/tcltk/src/Makefile config.status: creating src/library/tools/DESCRIPTION config.status: creating src/library/tools/Makefile config.status: creating src/library/tools/src/Makefile config.status: creating src/library/translations/DESCRIPTION config.status: creating src/library/translations/Makefile config.status: creating src/library/utils/DESCRIPTION config.status: creating src/library/utils/Makefile config.status: creating src/library/utils/src/Makefile config.status: creating src/main/Makefile config.status: creating src/modules/Makefile config.status: creating src/modules/X11/Makefile config.status: creating src/modules/internet/Makefile config.status: creating src/modules/lapack/Makefile config.status: creating src/nmath/Makefile config.status: creating src/nmath/standalone/Makefile config.status: creating src/scripts/Makefile config.status: creating src/scripts/R.sh config.status: creating src/scripts/Rcmd config.status: creating src/scripts/javareconf config.status: creating src/scripts/mkinstalldirs config.status: creating src/scripts/pager config.status: creating src/scripts/rtags config.status: creating src/unix/Makefile config.status: creating tests/Makefile config.status: creating tests/Embedding/Makefile config.status: creating tests/Examples/Makefile config.status: creating tools/Makefile config.status: creating src/include/config.h config.status: executing libtool commands config.status: executing stamp-h commands configure: WARNING: unrecognized options: --with-system-bzlib, --with-system-pcre, --with-system-zlib R is now configured for riscv64-unknown-linux-gnu Source directory: . Installation directory: /usr C compiler: gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g Fortran fixed-form compiler: gfortran -fno-optimize-sibling-calls -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong Default C++ compiler: g++ -std=gnu++14 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g C++11 compiler: g++ -std=gnu++11 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g C++14 compiler: g++ -std=gnu++14 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g C++17 compiler: g++ -std=gnu++17 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g C++20 compiler: g++ -std=gnu++20 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g Fortran free-form compiler: gfortran -fno-optimize-sibling-calls -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong Obj-C compiler: Interfaces supported: X11, tcltk External libraries: pcre2, readline, BLAS(generic), LAPACK(generic), curl Additional capabilities: PNG, JPEG, TIFF, NLS, cairo, ICU Options enabled: shared R library, R profiling, memory profiling Capabilities skipped: Options not enabled: shared BLAS Recommended packages: no touch configure-stamp *** make-arch *** /usr/bin/make CFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g" \ CXXFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g" \ FFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong" \ FCFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong" \ CC=gcc \ CXX=g++ \ F77=gfortran \ LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro" \ PKG_BUILT_STAMP="""" \ R_GZIPCMD="/bin/gzip -n" \ R make[1]: Entering directory '/<>' make[2]: Entering directory '/<>/m4' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/<>/m4' make[2]: Entering directory '/<>/tools' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/<>/tools' make[2]: Entering directory '/<>/doc' make[3]: Entering directory '/<>/doc/html' make[3]: Leaving directory '/<>/doc/html' make[3]: Entering directory '/<>/doc/manual' make[3]: Nothing to be done for 'R'. make[3]: Leaving directory '/<>/doc/manual' make[2]: Leaving directory '/<>/doc' make[2]: Entering directory '/<>/etc' make[2]: Leaving directory '/<>/etc' make[2]: Entering directory '/<>/share' make[2]: Leaving directory '/<>/share' make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src/scripts' creating src/scripts/R.fe make[4]: Entering directory '/<>/src/scripts' mkdir -p -- ../../bin make[4]: Leaving directory '/<>/src/scripts' make[3]: Leaving directory '/<>/src/scripts' make[3]: Entering directory '/<>/src/include' mkdir -p -- ../../include make[4]: Entering directory '/<>/src/include/R_ext' mkdir -p -- ../../../include/R_ext make[4]: Leaving directory '/<>/src/include/R_ext' make[3]: Leaving directory '/<>/src/include' make[3]: Entering directory '/<>/src/extra' make[4]: Entering directory '/<>/src/extra/tre' make[5]: Entering directory '/<>/src/extra/tre' making regcomp.d from regcomp.c making regerror.d from regerror.c making regexec.d from regexec.c making tre-ast.d from tre-ast.c making tre-compile.d from tre-compile.c making tre-match-approx.d from tre-match-approx.c making tre-match-backtrack.d from tre-match-backtrack.c making tre-match-parallel.d from tre-match-parallel.c making tre-mem.d from tre-mem.c making tre-parse.d from tre-parse.c making tre-stack.d from tre-stack.c making xmalloc.d from xmalloc.c make[5]: Leaving directory '/<>/src/extra/tre' make[5]: Entering directory '/<>/src/extra/tre' gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c regcomp.c -o regcomp.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c regerror.c -o regerror.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c regexec.c -o regexec.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-ast.c -o tre-ast.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-compile.c -o tre-compile.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-match-approx.c -o tre-match-approx.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-match-backtrack.c -o tre-match-backtrack.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-match-parallel.c -o tre-match-parallel.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-mem.c -o tre-mem.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-parse.c -o tre-parse.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c tre-stack.c -o tre-stack.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c xmalloc.c -o xmalloc.o ar -cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o xmalloc.o ranlib libtre.a make[5]: Leaving directory '/<>/src/extra/tre' make[4]: Leaving directory '/<>/src/extra/tre' make[3]: Leaving directory '/<>/src/extra' make[3]: Entering directory '/<>/src/appl' making integrate.d from integrate.c making interv.d from interv.c making maxcol.d from maxcol.c making optim.d from optim.c making pretty.d from pretty.c making uncmin.d from uncmin.c make[4]: Entering directory '/<>/src/appl' gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c integrate.c -o integrate.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c interv.c -o interv.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c maxcol.c -o maxcol.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c optim.c -o optim.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pretty.c -o pretty.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c uncmin.c -o uncmin.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c dchdc.f -o dchdc.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c dpbfa.f -o dpbfa.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c dpbsl.f -o dpbsl.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c dpoco.f -o dpoco.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c dpodi.f -o dpodi.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c dpofa.f -o dpofa.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c dposl.f -o dposl.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c dqrdc.f -o dqrdc.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c dqrdc2.f -o dqrdc2.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c dqrls.f -o dqrls.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c dqrsl.f -o dqrsl.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c dqrutl.f -o dqrutl.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c dsvdc.f -o dsvdc.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c dtrco.f -o dtrco.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c dtrsl.f -o dtrsl.o ar -cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o ranlib libappl.a make[4]: Leaving directory '/<>/src/appl' #@/usr/bin/make install-Linpack make[3]: Leaving directory '/<>/src/appl' make[3]: Entering directory '/<>/src/nmath' making mlutils.d from mlutils.c making d1mach.d from d1mach.c making i1mach.d from i1mach.c making fmax2.d from fmax2.c making fmin2.d from fmin2.c making fprec.d from fprec.c making fround.d from fround.c making ftrunc.d from ftrunc.c making sign.d from sign.c making fsign.d from fsign.c making imax2.d from imax2.c making imin2.d from imin2.c making chebyshev.d from chebyshev.c making log1p.d from log1p.c making lgammacor.d from lgammacor.c making gammalims.d from gammalims.c making stirlerr.d from stirlerr.c making bd0.d from bd0.c making gamma.d from gamma.c making lgamma.d from lgamma.c making gamma_cody.d from gamma_cody.c making beta.d from beta.c making lbeta.d from lbeta.c making polygamma.d from polygamma.c making cospi.d from cospi.c making bessel_i.d from bessel_i.c making bessel_j.d from bessel_j.c making bessel_k.d from bessel_k.c making bessel_y.d from bessel_y.c making choose.d from choose.c making snorm.d from snorm.c making sexp.d from sexp.c making dgamma.d from dgamma.c making pgamma.d from pgamma.c making qgamma.d from qgamma.c making rgamma.d from rgamma.c making dbeta.d from dbeta.c making pbeta.d from pbeta.c making qbeta.d from qbeta.c making rbeta.d from rbeta.c making dunif.d from dunif.c making punif.d from punif.c making qunif.d from qunif.c making runif.d from runif.c making dnorm.d from dnorm.c making pnorm.d from pnorm.c making qnorm.d from qnorm.c making rnorm.d from rnorm.c making dlnorm.d from dlnorm.c making plnorm.d from plnorm.c making qlnorm.d from qlnorm.c making rlnorm.d from rlnorm.c making df.d from df.c making pf.d from pf.c making qf.d from qf.c making rf.d from rf.c making dnf.d from dnf.c making dt.d from dt.c making pt.d from pt.c making qt.d from qt.c making rt.d from rt.c making dnt.d from dnt.c making dchisq.d from dchisq.c making pchisq.d from pchisq.c making qchisq.d from qchisq.c making rchisq.d from rchisq.c making rnchisq.d from rnchisq.c making dbinom.d from dbinom.c making pbinom.d from pbinom.c making qbinom.d from qbinom.c making rbinom.d from rbinom.c making rmultinom.d from rmultinom.c making dcauchy.d from dcauchy.c making pcauchy.d from pcauchy.c making qcauchy.d from qcauchy.c making rcauchy.d from rcauchy.c making dexp.d from dexp.c making pexp.d from pexp.c making qexp.d from qexp.c making rexp.d from rexp.c making dgeom.d from dgeom.c making pgeom.d from pgeom.c making qgeom.d from qgeom.c making rgeom.d from rgeom.c making dhyper.d from dhyper.c making phyper.d from phyper.c making qhyper.d from qhyper.c making rhyper.d from rhyper.c making dnbinom.d from dnbinom.c making pnbinom.d from pnbinom.c making qnbinom.d from qnbinom.c making qnbinom_mu.d from qnbinom_mu.c making rnbinom.d from rnbinom.c making dpois.d from dpois.c making ppois.d from ppois.c making qpois.d from qpois.c making rpois.d from rpois.c making dweibull.d from dweibull.c making pweibull.d from pweibull.c making qweibull.d from qweibull.c making rweibull.d from rweibull.c making dlogis.d from dlogis.c making plogis.d from plogis.c making qlogis.d from qlogis.c making rlogis.d from rlogis.c making dnchisq.d from dnchisq.c making pnchisq.d from pnchisq.c making qnchisq.d from qnchisq.c making dnbeta.d from dnbeta.c making pnbeta.d from pnbeta.c making qnbeta.d from qnbeta.c making pnf.d from pnf.c making pnt.d from pnt.c making qnf.d from qnf.c making qnt.d from qnt.c making ptukey.d from ptukey.c making qtukey.d from qtukey.c making toms708.d from toms708.c making wilcox.d from wilcox.c making signrank.d from signrank.c make[4]: Entering directory '/<>/src/nmath' gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mlutils.c -o mlutils.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c d1mach.c -o d1mach.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c i1mach.c -o i1mach.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fmax2.c -o fmax2.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fmin2.c -o fmin2.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fprec.c -o fprec.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fround.c -o fround.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ftrunc.c -o ftrunc.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sign.c -o sign.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fsign.c -o fsign.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c imax2.c -o imax2.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c imin2.c -o imin2.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c chebyshev.c -o chebyshev.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c log1p.c -o log1p.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lgammacor.c -o lgammacor.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gammalims.c -o gammalims.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stirlerr.c -o stirlerr.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bd0.c -o bd0.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gamma.c -o gamma.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lgamma.c -o lgamma.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gamma_cody.c -o gamma_cody.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c beta.c -o beta.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lbeta.c -o lbeta.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c polygamma.c -o polygamma.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cospi.c -o cospi.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bessel_i.c -o bessel_i.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bessel_j.c -o bessel_j.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bessel_k.c -o bessel_k.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bessel_y.c -o bessel_y.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c choose.c -o choose.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c snorm.c -o snorm.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sexp.c -o sexp.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dgamma.c -o dgamma.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pgamma.c -o pgamma.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qgamma.c -o qgamma.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rgamma.c -o rgamma.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dbeta.c -o dbeta.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pbeta.c -o pbeta.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qbeta.c -o qbeta.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rbeta.c -o rbeta.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dunif.c -o dunif.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c punif.c -o punif.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qunif.c -o qunif.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c runif.c -o runif.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dnorm.c -o dnorm.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pnorm.c -o pnorm.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qnorm.c -o qnorm.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rnorm.c -o rnorm.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dlnorm.c -o dlnorm.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c plnorm.c -o plnorm.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qlnorm.c -o qlnorm.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rlnorm.c -o rlnorm.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c df.c -o df.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pf.c -o pf.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qf.c -o qf.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rf.c -o rf.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dnf.c -o dnf.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dt.c -o dt.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pt.c -o pt.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qt.c -o qt.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rt.c -o rt.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dnt.c -o dnt.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dchisq.c -o dchisq.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pchisq.c -o pchisq.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qchisq.c -o qchisq.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rchisq.c -o rchisq.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rnchisq.c -o rnchisq.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dbinom.c -o dbinom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pbinom.c -o pbinom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qbinom.c -o qbinom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rbinom.c -o rbinom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rmultinom.c -o rmultinom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dcauchy.c -o dcauchy.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pcauchy.c -o pcauchy.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qcauchy.c -o qcauchy.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rcauchy.c -o rcauchy.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dexp.c -o dexp.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pexp.c -o pexp.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qexp.c -o qexp.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rexp.c -o rexp.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dgeom.c -o dgeom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pgeom.c -o pgeom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qgeom.c -o qgeom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rgeom.c -o rgeom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dhyper.c -o dhyper.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c phyper.c -o phyper.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qhyper.c -o qhyper.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rhyper.c -o rhyper.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dnbinom.c -o dnbinom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pnbinom.c -o pnbinom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qnbinom.c -o qnbinom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qnbinom_mu.c -o qnbinom_mu.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rnbinom.c -o rnbinom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dpois.c -o dpois.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ppois.c -o ppois.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qpois.c -o qpois.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rpois.c -o rpois.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dweibull.c -o dweibull.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pweibull.c -o pweibull.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qweibull.c -o qweibull.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rweibull.c -o rweibull.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dlogis.c -o dlogis.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c plogis.c -o plogis.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qlogis.c -o qlogis.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rlogis.c -o rlogis.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dnchisq.c -o dnchisq.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pnchisq.c -o pnchisq.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qnchisq.c -o qnchisq.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dnbeta.c -o dnbeta.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pnbeta.c -o pnbeta.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qnbeta.c -o qnbeta.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pnf.c -o pnf.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pnt.c -o pnt.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qnf.c -o qnf.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qnt.c -o qnt.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ptukey.c -o ptukey.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qtukey.c -o qtukey.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c toms708.c -o toms708.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c wilcox.c -o wilcox.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c signrank.c -o signrank.o ar -cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o qnbinom_mu.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o ranlib libnmath.a make[4]: Leaving directory '/<>/src/nmath' make[3]: Leaving directory '/<>/src/nmath' make[3]: Entering directory '/<>/src/unix' config.status: creating src/unix/Makefile making Rembedded.d from Rembedded.c making dynload.d from dynload.c making system.d from system.c making sys-unix.d from sys-unix.c making sys-std.d from sys-std.c making X11.d from X11.c make[4]: Entering directory '/<>/src/unix' gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rembedded.c -o Rembedded.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dynload.c -o dynload.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c system.c -o system.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sys-unix.c -o sys-unix.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sys-std.c -o sys-std.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c X11.c -o X11.o ar -cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o ranlib libunix.a make[4]: Leaving directory '/<>/src/unix' make[4]: Entering directory '/<>/src/unix' gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wl,-Bsymbolic-functions -Wl,-z,relro -DR_HOME='"/<>"' \ -o Rscript ./Rscript.c make[4]: Leaving directory '/<>/src/unix' make[3]: Leaving directory '/<>/src/unix' make[3]: Entering directory '/<>/src/main' config.status: creating src/main/Makefile making CommandLineArgs.d from CommandLineArgs.c making Rdynload.d from Rdynload.c making Renviron.d from Renviron.c making RNG.d from RNG.c making agrep.d from agrep.c making altclasses.d from altclasses.c making altrep.d from altrep.c making apply.d from apply.c making arithmetic.d from arithmetic.c making array.d from array.c making attrib.d from attrib.c making bind.d from bind.c making builtin.d from builtin.c making character.d from character.c making coerce.d from coerce.c making colors.d from colors.c making complex.d from complex.c making connections.d from connections.c making context.d from context.c making cum.d from cum.c making dcf.d from dcf.c making datetime.d from datetime.c making debug.d from debug.c making deparse.d from deparse.c making devices.d from devices.c making dotcode.d from dotcode.c making dounzip.d from dounzip.c making dstruct.d from dstruct.c making duplicate.d from duplicate.c making edit.d from edit.c making engine.d from engine.c making envir.d from envir.c making errors.d from errors.c making eval.d from eval.c making format.d from format.c making gevents.d from gevents.c making gram.d from gram.c making gram-ex.d from gram-ex.c making graphics.d from graphics.c making grep.d from grep.c making identical.d from identical.c making inlined.d from inlined.c making inspect.d from inspect.c making internet.d from internet.c making iosupport.d from iosupport.c making lapack.d from lapack.c making list.d from list.c making localecharset.d from localecharset.c making logic.d from logic.c making main.d from main.c making mapply.d from mapply.c making match.d from match.c making memory.d from memory.c making names.d from names.c making objects.d from objects.c making options.d from options.c making paste.d from paste.c making patterns.d from patterns.c making platform.d from platform.c making plot.d from plot.c making plot3d.d from plot3d.c making plotmath.d from plotmath.c making print.d from print.c making printarray.d from printarray.c making printvector.d from printvector.c making printutils.d from printutils.c making qsort.d from qsort.c making radixsort.d from radixsort.c making random.d from random.c making raw.d from raw.c making registration.d from registration.c making relop.d from relop.c making rlocale.d from rlocale.c making saveload.d from saveload.c making scan.d from scan.c making seq.d from seq.c making serialize.d from serialize.c making sort.d from sort.c making source.d from source.c making split.d from split.c making sprintf.d from sprintf.c making startup.d from startup.c making subassign.d from subassign.c making subscript.d from subscript.c making subset.d from subset.c making summary.d from summary.c making sysutils.d from sysutils.c making times.d from times.c making unique.d from unique.c making util.d from util.c making version.d from version.c making g_alab_her.d from g_alab_her.c making g_cntrlify.d from g_cntrlify.c making g_fontdb.d from g_fontdb.c making g_her_glyph.d from g_her_glyph.c making Rmain.d from Rmain.c making alloca.d from alloca.c making mkdtemp.d from mkdtemp.c making strdup.d from strdup.c making strncasecmp.d from strncasecmp.c make[4]: Entering directory '/<>/src/main' gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c CommandLineArgs.c -o CommandLineArgs.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rdynload.c -o Rdynload.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Renviron.c -o Renviron.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RNG.c -o RNG.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c agrep.c -o agrep.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c altclasses.c -o altclasses.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c altrep.c -o altrep.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c apply.c -o apply.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c arithmetic.c -o arithmetic.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c array.c -o array.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c attrib.c -o attrib.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bind.c -o bind.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c builtin.c -o builtin.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c character.c -o character.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c coerce.c -o coerce.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c colors.c -o colors.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c complex.c -o complex.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c connections.c -o connections.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c context.c -o context.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cum.c -o cum.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dcf.c -o dcf.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c datetime.c -o datetime.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c debug.c -o debug.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c deparse.c -o deparse.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c devices.c -o devices.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dotcode.c -o dotcode.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dounzip.c -o dounzip.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dstruct.c -o dstruct.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c duplicate.c -o duplicate.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c edit.c -o edit.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c engine.c -o engine.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c envir.c -o envir.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c errors.c -o errors.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c eval.c -o eval.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c format.c -o format.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gevents.c -o gevents.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gram.c -o gram.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gram-ex.c -o gram-ex.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c graphics.c -o graphics.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c grep.c -o grep.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c identical.c -o identical.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c inlined.c -o inlined.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c inspect.c -o inspect.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c internet.c -o internet.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c iosupport.c -o iosupport.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lapack.c -o lapack.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c list.c -o list.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c localecharset.c -o localecharset.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c logic.c -o logic.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c main.c -o main.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mapply.c -o mapply.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c match.c -o match.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c memory.c -o memory.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c names.c -o names.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c objects.c -o objects.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c options.c -o options.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c paste.c -o paste.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c patterns.c -o patterns.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c platform.c -o platform.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c plot.c -o plot.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c plot3d.c -o plot3d.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c plotmath.c -o plotmath.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c print.c -o print.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c printarray.c -o printarray.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c printvector.c -o printvector.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c printutils.c -o printutils.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c qsort.c -o qsort.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c radixsort.c -o radixsort.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c random.c -o random.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c raw.c -o raw.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c registration.c -o registration.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c relop.c -o relop.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rlocale.c -o rlocale.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c saveload.c -o saveload.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c scan.c -o scan.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c seq.c -o seq.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c serialize.c -o serialize.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sort.c -o sort.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c source.c -o source.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c split.c -o split.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sprintf.c -o sprintf.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c startup.c -o startup.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c subassign.c -o subassign.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c subscript.c -o subscript.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c subset.c -o subset.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c summary.c -o summary.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sysutils.c -o sysutils.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c times.c -o times.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unique.c -o unique.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c util.c -o util.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c version.c -o version.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c g_alab_her.c -o g_alab_her.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c g_cntrlify.c -o g_cntrlify.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c g_fontdb.c -o g_fontdb.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c g_her_glyph.c -o g_her_glyph.o gfortran -fno-optimize-sibling-calls -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c xxxpr.f -o xxxpr.o gcc -shared -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o altclasses.o altrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o names.o objects.o options.o paste.o patterns.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o radixsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/tre/libtre.a -lblas -lgfortran -lm -lreadline -lpcre2-8 -llzma -lbz2 -lz -ltirpc -lrt -ldl -lm -licuuc -licui18n make[5]: Entering directory '/<>/src/main' mkdir -p -- /<>/bin/exec mkdir -p -- /<>/lib make[5]: Leaving directory '/<>/src/main' make[4]: Leaving directory '/<>/src/main' make[4]: Entering directory '/<>/src/main' gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rmain.c -o Rmain.o gcc -Wl,--export-dynamic -fopenmp -L"../../lib" -Wl,-Bsymbolic-functions -Wl,-z,relro -o R.bin Rmain.o -lR make[5]: Entering directory '/<>/src/main' make[5]: Leaving directory '/<>/src/main' make[4]: Leaving directory '/<>/src/main' make[3]: Leaving directory '/<>/src/main' make[3]: Entering directory '/<>/src/modules' make[4]: Entering directory '/<>/src/modules/internet' making Rhttpd.d from Rhttpd.c making Rsock.d from Rsock.c making internet.d from internet.c making libcurl.d from libcurl.c making nanoftp.d from nanoftp.c making nanohttp.d from nanohttp.c making sock.d from sock.c making sockconn.d from sockconn.c make[5]: Entering directory '/<>/src/modules/internet' gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c Rhttpd.c -o Rhttpd.o gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c Rsock.c -o Rsock.o gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c internet.c -o internet.o gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c libcurl.c -o libcurl.o gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c nanoftp.c -o nanoftp.o gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c nanohttp.c -o nanohttp.o gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c sock.c -o sock.o gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fvisibility=hidden -c sockconn.c -o sockconn.o gcc -shared -L"../../../lib" -Wl,-Bsymbolic-functions -Wl,-z,relro -o internet.so Rhttpd.o Rsock.o internet.o libcurl.o nanoftp.o nanohttp.o sock.o sockconn.o -lcurl -lR make[6]: Entering directory '/<>/src/modules/internet' mkdir -p -- /<>/modules make[6]: Leaving directory '/<>/src/modules/internet' make[5]: Leaving directory '/<>/src/modules/internet' make[4]: Leaving directory '/<>/src/modules/internet' make[4]: Entering directory '/<>/src/modules/lapack' making Lapack.d from Lapack.c make[5]: Entering directory '/<>/src/modules/lapack' gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Lapack.c -o Lapack.o gcc -shared -L"../../../lib" -Wl,-Bsymbolic-functions -Wl,-z,relro -o lapack.so Lapack.o -lR -llapack -lblas -lgfortran -lm make[6]: Entering directory '/<>/src/modules/lapack' make[6]: Leaving directory '/<>/src/modules/lapack' make[5]: Leaving directory '/<>/src/modules/lapack' make[4]: Leaving directory '/<>/src/modules/lapack' make[4]: Entering directory '/<>/src/modules/X11' making devX11.d from devX11.c making rotated.d from rotated.c making rbitmap.d from rbitmap.c make[5]: Entering directory '/<>/src/modules/X11' gcc -I/usr/include/libpng16 -I/usr/include/riscv64-linux-gnu -I. -I../../../src/include -I../../../src/include -pthread -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/riscv64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I../../../src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c devX11.c -o devX11.o gcc -I/usr/include/libpng16 -I/usr/include/riscv64-linux-gnu -I. -I../../../src/include -I../../../src/include -pthread -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/riscv64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I../../../src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rotated.c -o rotated.o gcc -I/usr/include/libpng16 -I/usr/include/riscv64-linux-gnu -I. -I../../../src/include -I../../../src/include -pthread -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/riscv64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I../../../src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rbitmap.c -o rbitmap.o gcc -shared -L"../../../lib" -Wl,-Bsymbolic-functions -Wl,-z,relro -o R_X11.so devX11.o rotated.o rbitmap.o -ltiff -L/build/libjpeg-turbo-piRd5P/libjpeg-turbo-2.0.6/obj-riscv64-linux-gnu/lib/riscv64-linux-gnu -ljpeg -lpng16 -lz -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lpng16 -lz -lcairo -lX11 -lXext -lX11 -lXt -lR -lm gcc -I/usr/include/libpng16 -I/usr/include/riscv64-linux-gnu -I. -I../../../src/include -I../../../src/include -pthread -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/riscv64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I../../../src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dataentry.c -o dataentry.o gcc -shared -L"../../../lib" -Wl,-Bsymbolic-functions -Wl,-z,relro -o R_de.so dataentry.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lpng16 -lz -lcairo -lX11 -lXext -lX11 -lXt -lR -lm make[5]: Leaving directory '/<>/src/modules/X11' make[5]: Entering directory '/<>/src/modules/X11' make[5]: Leaving directory '/<>/src/modules/X11' make[4]: Leaving directory '/<>/src/modules/X11' make[3]: Leaving directory '/<>/src/modules' make[3]: Entering directory '/<>/src/library' mkdir -p -- ../../library make[4]: Entering directory '/<>/src/library/profile' building system startup profile mkdir -p -- ../../../library/base/R make[4]: Leaving directory '/<>/src/library/profile' make[4]: Entering directory '/<>/src/library/translations' building package 'translations' mkdir -p -- ../../../library/translations make[5]: Entering directory '/<>/src/library/translations' make[5]: Leaving directory '/<>/src/library/translations' make[4]: Leaving directory '/<>/src/library/translations' make[4]: Entering directory '/<>/src/library/base' building package 'base' make[5]: Entering directory '/<>/src/library/base' mkdir -p -- ../../../library/base/demo make[5]: Leaving directory '/<>/src/library/base' make[4]: Leaving directory '/<>/src/library/base' make[4]: Entering directory '/<>/src/library/tools' building package 'tools' mkdir -p -- ../../../library/tools make[5]: Entering directory '/<>/src/library/tools' mkdir -p -- ../../../library/tools/R make[5]: Leaving directory '/<>/src/library/tools' make[5]: Entering directory '/<>/src/library/tools' make[6]: Entering directory '/<>/src/library/tools/src' making text.d from text.c making init.d from init.c making Rmd5.d from Rmd5.c making md5.d from md5.c making signals.d from signals.c making install.d from install.c making getfmts.d from getfmts.c making http.d from http.c making gramLatex.d from gramLatex.c making gramRd.d from gramRd.c making pdscan.d from pdscan.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c text.c -o text.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rmd5.c -o Rmd5.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c md5.c -o md5.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c signals.c -o signals.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c install.c -o install.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c getfmts.c -o getfmts.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c http.c -o http.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gramLatex.c -o gramLatex.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gramRd.c -o gramRd.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pdscan.c -o pdscan.o gcc -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o pdscan.o -L../../../../lib -lR make[7]: Entering directory '/<>/src/library/tools/src' mkdir -p -- ../../../../library/tools/libs make[7]: Leaving directory '/<>/src/library/tools/src' make[6]: Leaving directory '/<>/src/library/tools/src' make[5]: Leaving directory '/<>/src/library/tools' make[5]: Entering directory '/<>/src/library/tools' installing 'sysdata.rda' make[5]: Leaving directory '/<>/src/library/tools' make[4]: Leaving directory '/<>/src/library/tools' make[4]: Entering directory '/<>/src/library/compiler' building package 'compiler' mkdir -p -- ../../../library/compiler make[5]: Entering directory '/<>/src/library/compiler' mkdir -p -- ../../../library/compiler/R make[5]: Leaving directory '/<>/src/library/compiler' make[5]: Entering directory '/<>/src/library/compiler' byte-compiling package 'compiler' make[5]: Leaving directory '/<>/src/library/compiler' make[4]: Leaving directory '/<>/src/library/compiler' make[4]: Entering directory '/<>/src/library/base' byte-compiling package 'base' make[4]: Leaving directory '/<>/src/library/base' make[4]: Entering directory '/<>/src/library/tools' byte-compiling package 'tools' make[4]: Leaving directory '/<>/src/library/tools' make[4]: Entering directory '/<>/src/library/utils' building package 'utils' mkdir -p -- ../../../library/utils mkdir -p -- ../../../library/utils/doc make[5]: Entering directory '/<>/src/library/utils' mkdir -p -- ../../../library/utils/R mkdir -p -- ../../../library/utils/Sweave mkdir -p -- ../../../library/utils/misc make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' make[6]: Entering directory '/<>/src/library/utils/src' making init.d from init.c making io.d from io.c making size.d from size.c making sock.d from sock.c making stubs.d from stubs.c making utils.d from utils.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c io.c -o io.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c size.c -o size.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sock.c -o sock.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stubs.c -o stubs.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o gcc -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o utils.so init.o io.o size.o sock.o stubs.o utils.o -L../../../../lib -lR make[7]: Entering directory '/<>/src/library/utils/src' mkdir -p -- ../../../../library/utils/libs make[7]: Leaving directory '/<>/src/library/utils/src' make[6]: Leaving directory '/<>/src/library/utils/src' make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' installing 'sysdata.rda' make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' byte-compiling package 'utils' make[5]: Leaving directory '/<>/src/library/utils' make[4]: Leaving directory '/<>/src/library/utils' make[4]: Entering directory '/<>/src/library/grDevices' building package 'grDevices' mkdir -p -- ../../../library/grDevices make[5]: Entering directory '/<>/src/library/grDevices' mkdir -p -- ../../../library/grDevices/R mkdir -p -- ../../../library/grDevices/afm mkdir -p -- ../../../library/grDevices/enc mkdir -p -- ../../../library/grDevices/icc make[5]: Leaving directory '/<>/src/library/grDevices' make[5]: Entering directory '/<>/src/library/grDevices' make[6]: Entering directory '/<>/src/library/grDevices/src' making axis_scales.d from axis_scales.c making chull.d from chull.c making devices.d from devices.c making init.d from init.c making stubs.d from stubs.c making colors.d from colors.c making clippath.d from clippath.c making patterns.d from patterns.c making mask.d from mask.c making devCairo.d from devCairo.c making devPicTeX.d from devPicTeX.c making devPS.d from devPS.c making devQuartz.d from devQuartz.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c axis_scales.c -o axis_scales.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c chull.c -o chull.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c devices.c -o devices.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stubs.c -o stubs.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c colors.c -o colors.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c clippath.c -o clippath.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c patterns.c -o patterns.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mask.c -o mask.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c devCairo.c -o devCairo.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c devPicTeX.c -o devPicTeX.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c devPS.c -o devPS.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c devQuartz.c -o devQuartz.o gcc -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o clippath.o patterns.o mask.o devCairo.o devPicTeX.o devPS.o devQuartz.o -lz -L../../../../lib -lR make[7]: Entering directory '/<>/src/library/grDevices/src' mkdir -p -- ../../../../library/grDevices/libs make[8]: Entering directory '/<>/src/library/grDevices/src/cairo' making cairoBM.d from cairoBM.c make[9]: Entering directory '/<>/src/library/grDevices/src/cairo' make[10]: Entering directory '/<>/src/library/grDevices/src/cairo' gcc -I. -I../../../../../src/include -I../../../../../src/include -pthread -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/riscv64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -I../../../../../src/modules/X11 -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cairoBM.c -o cairoBM.o gcc -shared -L"../../../../../lib" -Wl,-Bsymbolic-functions -Wl,-z,relro -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -ltiff -L/build/libjpeg-turbo-piRd5P/libjpeg-turbo-2.0.6/obj-riscv64-linux-gnu/lib/riscv64-linux-gnu -ljpeg -lpng16 -lz -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lpng16 -lz -lcairo -L"../../../../../lib" -lR -lm make[10]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[9]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[8]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[7]: Leaving directory '/<>/src/library/grDevices/src' make[6]: Leaving directory '/<>/src/library/grDevices/src' make[5]: Leaving directory '/<>/src/library/grDevices' make[5]: Entering directory '/<>/src/library/grDevices' byte-compiling package 'grDevices' make[5]: Leaving directory '/<>/src/library/grDevices' make[4]: Leaving directory '/<>/src/library/grDevices' make[4]: Entering directory '/<>/src/library/graphics' building package 'graphics' mkdir -p -- ../../../library/graphics make[5]: Entering directory '/<>/src/library/graphics' mkdir -p -- ../../../library/graphics/R make[5]: Leaving directory '/<>/src/library/graphics' make[5]: Entering directory '/<>/src/library/graphics' make[6]: Entering directory '/<>/src/library/graphics/src' making init.d from init.c making base.d from base.c making graphics.d from graphics.c making par.d from par.c making plot.d from plot.c making plot3d.d from plot3d.c making stem.d from stem.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c base.c -o base.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c graphics.c -o graphics.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c par.c -o par.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c plot.c -o plot.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c plot3d.c -o plot3d.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stem.c -o stem.o gcc -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR make[7]: Entering directory '/<>/src/library/graphics/src' mkdir -p -- ../../../../library/graphics/libs make[7]: Leaving directory '/<>/src/library/graphics/src' make[6]: Leaving directory '/<>/src/library/graphics/src' make[5]: Leaving directory '/<>/src/library/graphics' make[5]: Entering directory '/<>/src/library/graphics' byte-compiling package 'graphics' make[5]: Leaving directory '/<>/src/library/graphics' make[4]: Leaving directory '/<>/src/library/graphics' make[4]: Entering directory '/<>/src/library/stats' building package 'stats' mkdir -p -- ../../../library/stats make[5]: Entering directory '/<>/src/library/stats' mkdir -p -- ../../../library/stats/R make[5]: Leaving directory '/<>/src/library/stats' make[5]: Entering directory '/<>/src/library/stats' make[6]: Entering directory '/<>/src/library/stats/src' making init.d from init.c making kmeans.d from kmeans.c making ansari.d from ansari.c making bandwidths.d from bandwidths.c making chisqsim.d from chisqsim.c making d2x2xk.d from d2x2xk.c making fexact.d from fexact.c making kendall.d from kendall.c making ks.d from ks.c making line.d from line.c making smooth.d from smooth.c making prho.d from prho.c making swilk.d from swilk.c making ksmooth.d from ksmooth.c making loessc.d from loessc.c making monoSpl.d from monoSpl.c making isoreg.d from isoreg.c making Srunmed.d from Srunmed.c making dblcen.d from dblcen.c making distance.d from distance.c making hclust-utils.d from hclust-utils.c making nls.d from nls.c making rWishart.d from rWishart.c making HoltWinters.d from HoltWinters.c making PPsum.d from PPsum.c making arima.d from arima.c making burg.d from burg.c making filter.d from filter.c making mAR.d from mAR.c making pacf.d from pacf.c making starma.d from starma.c making port.d from port.c making family.d from family.c making sbart.d from sbart.c making approx.d from approx.c making loglin.d from loglin.c making lowess.d from lowess.c making massdist.d from massdist.c making splines.d from splines.c making lm.d from lm.c making complete_cases.d from complete_cases.c making cov.d from cov.c making deriv.d from deriv.c making fft.d from fft.c making fourier.d from fourier.c making model.d from model.c making optim.d from optim.c making optimize.d from optimize.c making integrate.d from integrate.c making random.d from random.c making distn.d from distn.c making zeroin.d from zeroin.c making rcont.d from rcont.c making influence.d from influence.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c kmeans.c -o kmeans.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ansari.c -o ansari.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bandwidths.c -o bandwidths.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c chisqsim.c -o chisqsim.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c d2x2xk.c -o d2x2xk.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fexact.c -o fexact.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c kendall.c -o kendall.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ks.c -o ks.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c line.c -o line.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c smooth.c -o smooth.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c prho.c -o prho.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c swilk.c -o swilk.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ksmooth.c -o ksmooth.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c loessc.c -o loessc.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c monoSpl.c -o monoSpl.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c isoreg.c -o isoreg.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Srunmed.c -o Srunmed.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dblcen.c -o dblcen.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c distance.c -o distance.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hclust-utils.c -o hclust-utils.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nls.c -o nls.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rWishart.c -o rWishart.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c HoltWinters.c -o HoltWinters.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c PPsum.c -o PPsum.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c arima.c -o arima.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c burg.c -o burg.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c filter.c -o filter.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mAR.c -o mAR.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pacf.c -o pacf.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c starma.c -o starma.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c port.c -o port.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c family.c -o family.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sbart.c -o sbart.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c approx.c -o approx.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c loglin.c -o loglin.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lowess.c -o lowess.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c massdist.c -o massdist.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c splines.c -o splines.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lm.c -o lm.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c complete_cases.c -o complete_cases.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cov.c -o cov.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c deriv.c -o deriv.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fft.c -o fft.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fourier.c -o fourier.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c model.c -o model.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c optim.c -o optim.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c optimize.c -o optimize.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c integrate.c -o integrate.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c random.c -o random.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c distn.c -o distn.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c zeroin.c -o zeroin.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rcont.c -o rcont.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c influence.c -o influence.o gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c bsplvd.f -o bsplvd.o gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c bvalue.f -o bvalue.o gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c bvalus.f -o bvalus.o gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c loessf.f -o loessf.o gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c ppr.f -o ppr.o gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c qsbart.f -o qsbart.o gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c sgram.f -o sgram.o gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c sinerp.f -o sinerp.o gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c sslvrg.f -o sslvrg.o gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c stxwx.f -o stxwx.o gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c hclust.f -o hclust.o gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c kmns.f -o kmns.o gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c eureka.f -o eureka.o gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c stl.f -o stl.o gfortran -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c portsrc.f -o portsrc.o gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -c lminfl.f -o lminfl.o gcc -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -llapack -lblas -lgfortran -lm -L../../../../lib -lR make[7]: Entering directory '/<>/src/library/stats/src' mkdir -p -- ../../../../library/stats/libs make[7]: Leaving directory '/<>/src/library/stats/src' make[6]: Leaving directory '/<>/src/library/stats/src' make[5]: Leaving directory '/<>/src/library/stats' make[5]: Entering directory '/<>/src/library/stats' byte-compiling package 'stats' make[5]: Leaving directory '/<>/src/library/stats' make[4]: Leaving directory '/<>/src/library/stats' make[4]: Entering directory '/<>/src/library/datasets' building package 'datasets' mkdir -p -- ../../../library/datasets make[5]: Entering directory '/<>/src/library/datasets' make[5]: Leaving directory '/<>/src/library/datasets' mkdir -p -- ../../../library/datasets/data make[4]: Leaving directory '/<>/src/library/datasets' make[4]: Entering directory '/<>/src/library/methods' building package 'methods' mkdir -p -- ../../../library/methods make[5]: Entering directory '/<>/src/library/methods' mkdir -p -- ../../../library/methods/R make[5]: Leaving directory '/<>/src/library/methods' make[5]: Entering directory '/<>/src/library/methods' make[6]: Entering directory '/<>/src/library/methods/src' making do_substitute_direct.d from do_substitute_direct.c making init.d from init.c making methods_list_dispatch.d from methods_list_dispatch.c making slot.d from slot.c making class_support.d from class_support.c making tests.d from tests.c making utils.d from utils.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c do_substitute_direct.c -o do_substitute_direct.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c methods_list_dispatch.c -o methods_list_dispatch.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c slot.c -o slot.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c class_support.c -o class_support.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tests.c -o tests.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o gcc -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR make[7]: Entering directory '/<>/src/library/methods/src' mkdir -p -- ../../../../library/methods/libs make[7]: Leaving directory '/<>/src/library/methods/src' make[6]: Leaving directory '/<>/src/library/methods/src' make[5]: Leaving directory '/<>/src/library/methods' make[5]: Entering directory '/<>/src/library/methods' byte-compiling package 'methods' initializing class and method definitions ... done make[5]: Leaving directory '/<>/src/library/methods' make[4]: Leaving directory '/<>/src/library/methods' make[4]: Entering directory '/<>/src/library/grid' building package 'grid' mkdir -p -- ../../../library/grid mkdir -p -- ../../../library/grid/doc make[5]: Entering directory '/<>/src/library/grid' mkdir -p -- ../../../library/grid/R make[5]: Leaving directory '/<>/src/library/grid' make[5]: Entering directory '/<>/src/library/grid' make[6]: Entering directory '/<>/src/library/grid/src' making clippath.d from clippath.c making gpar.d from gpar.c making grid.d from grid.c making just.d from just.c making layout.d from layout.c making mask.d from mask.c making matrix.d from matrix.c making register.d from register.c making state.d from state.c making unit.d from unit.c making util.d from util.c making viewport.d from viewport.c gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c clippath.c -o clippath.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c gpar.c -o gpar.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c grid.c -o grid.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c just.c -o just.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c layout.c -o layout.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mask.c -o mask.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c matrix.c -o matrix.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c register.c -o register.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c state.c -o state.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unit.c -o unit.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c util.c -o util.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c viewport.c -o viewport.o gcc -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o grid.so clippath.o gpar.o grid.o just.o layout.o mask.o matrix.o register.o state.o unit.o util.o viewport.o -L../../../../lib -lR make[7]: Entering directory '/<>/src/library/grid/src' mkdir -p -- ../../../../library/grid/libs make[7]: Leaving directory '/<>/src/library/grid/src' make[6]: Leaving directory '/<>/src/library/grid/src' make[5]: Leaving directory '/<>/src/library/grid' make[5]: Entering directory '/<>/src/library/grid' byte-compiling package 'grid' make[5]: Leaving directory '/<>/src/library/grid' make[4]: Leaving directory '/<>/src/library/grid' make[4]: Entering directory '/<>/src/library/splines' building package 'splines' mkdir -p -- ../../../library/splines make[5]: Entering directory '/<>/src/library/splines' mkdir -p -- ../../../library/splines/R make[5]: Leaving directory '/<>/src/library/splines' make[5]: Entering directory '/<>/src/library/splines' make[6]: Entering directory '/<>/src/library/splines/src' making splines.d from splines.c gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c splines.c -o splines.o gcc -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o splines.so splines.o -L../../../../lib -lR make[7]: Entering directory '/<>/src/library/splines/src' mkdir -p -- ../../../../library/splines/libs make[7]: Leaving directory '/<>/src/library/splines/src' make[6]: Leaving directory '/<>/src/library/splines/src' make[5]: Leaving directory '/<>/src/library/splines' make[5]: Entering directory '/<>/src/library/splines' byte-compiling package 'splines' make[5]: Leaving directory '/<>/src/library/splines' make[4]: Leaving directory '/<>/src/library/splines' make[4]: Entering directory '/<>/src/library/stats4' building package 'stats4' mkdir -p -- ../../../library/stats4 make[5]: Entering directory '/<>/src/library/stats4' mkdir -p -- ../../../library/stats4/R make[5]: Leaving directory '/<>/src/library/stats4' make[5]: Entering directory '/<>/src/library/stats4' byte-compiling package 'stats4' make[5]: Leaving directory '/<>/src/library/stats4' make[4]: Leaving directory '/<>/src/library/stats4' make[4]: Entering directory '/<>/src/library/tcltk' building package 'tcltk' mkdir -p -- ../../../library/tcltk/R make[5]: Entering directory '/<>/src/library/tcltk' mkdir -p -- ../../../library/tcltk/exec make[5]: Leaving directory '/<>/src/library/tcltk' make[5]: Entering directory '/<>/src/library/tcltk/src' making init.d from init.c making tcltk.d from tcltk.c making tcltk_unix.d from tcltk_unix.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6 -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6 -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tcltk.c -o tcltk.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6 -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tcltk_unix.c -o tcltk_unix.o gcc -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/lib/riscv64-linux-gnu -ltcl8.6 -L/usr/lib/riscv64-linux-gnu -ltk8.6 -lX11 -lXss -lXext -lm -L../../../../lib -lR make[6]: Entering directory '/<>/src/library/tcltk/src' mkdir -p -- ../../../../library/tcltk/libs make[6]: Leaving directory '/<>/src/library/tcltk/src' make[5]: Leaving directory '/<>/src/library/tcltk/src' make[5]: Entering directory '/<>/src/library/tcltk' byte-compiling package 'tcltk' make[5]: Leaving directory '/<>/src/library/tcltk' make[4]: Leaving directory '/<>/src/library/tcltk' make[4]: Entering directory '/<>/src/library/parallel' building package 'parallel' mkdir -p -- ../../../library/parallel mkdir -p -- ../../../library/parallel/doc make[5]: Entering directory '/<>/src/library/parallel' mkdir -p -- ../../../library/parallel/R make[5]: Leaving directory '/<>/src/library/parallel' make[5]: Entering directory '/<>/src/library/parallel' make[6]: Entering directory '/<>/src/library/parallel/src' making init.d from init.c making rngstream.d from rngstream.c making fork.d from fork.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rngstream.c -o rngstream.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c fork.c -o fork.o gcc -shared -L../../../../lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR make[7]: Entering directory '/<>/src/library/parallel/src' mkdir -p -- ../../../../library/parallel/libs make[7]: Leaving directory '/<>/src/library/parallel/src' make[6]: Leaving directory '/<>/src/library/parallel/src' make[5]: Leaving directory '/<>/src/library/parallel' make[5]: Entering directory '/<>/src/library/parallel' byte-compiling package 'parallel' make[5]: Leaving directory '/<>/src/library/parallel' make[4]: Leaving directory '/<>/src/library/parallel' make[4]: Entering directory '/<>/src/library/base' make[4]: Leaving directory '/<>/src/library/base' installing parsed NAMESPACE files make[3]: Leaving directory '/<>/src/library' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>/tests' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/<>/tests' you should 'make docs' now ... make[1]: Leaving directory '/<>' (cd src/nmath/standalone; \ /usr/bin/make CFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT" \ CXXFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT" \ FFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -D_REENTRANT" \ CC=gcc \ CXX=g++ \ F77=gfortran \ R_GZIPCMD="/bin/gzip -n" \ libRmath_la_LDFLAGS=-Wl,-soname,libRmath.so.1 \ shared static ) make[1]: Entering directory '/<>/src/nmath/standalone' (cd ../../include; /usr/bin/make Rmath.h) make[2]: Entering directory '/<>/src/include' make[2]: 'Rmath.h' is up to date. make[2]: Leaving directory '/<>/src/include' Copying source files make[2]: Entering directory '/<>/src/nmath/standalone' making mlutils.d from mlutils.c making d1mach.d from d1mach.c making i1mach.d from i1mach.c making fmax2.d from fmax2.c making fmin2.d from fmin2.c making fprec.d from fprec.c making fround.d from fround.c making ftrunc.d from ftrunc.c making sign.d from sign.c making fsign.d from fsign.c making imax2.d from imax2.c making imin2.d from imin2.c making chebyshev.d from chebyshev.c making log1p.d from log1p.c making lgammacor.d from lgammacor.c making gammalims.d from gammalims.c making stirlerr.d from stirlerr.c making bd0.d from bd0.c making gamma.d from gamma.c making lgamma.d from lgamma.c making gamma_cody.d from gamma_cody.c making beta.d from beta.c making lbeta.d from lbeta.c making polygamma.d from polygamma.c making cospi.d from cospi.c making bessel_i.d from bessel_i.c making bessel_j.d from bessel_j.c making bessel_k.d from bessel_k.c making bessel_y.d from bessel_y.c making choose.d from choose.c making snorm.d from snorm.c making sexp.d from sexp.c making dgamma.d from dgamma.c making pgamma.d from pgamma.c making qgamma.d from qgamma.c making rgamma.d from rgamma.c making dbeta.d from dbeta.c making pbeta.d from pbeta.c making qbeta.d from qbeta.c making rbeta.d from rbeta.c making dunif.d from dunif.c making punif.d from punif.c making qunif.d from qunif.c making runif.d from runif.c making dnorm.d from dnorm.c making pnorm.d from pnorm.c making qnorm.d from qnorm.c making rnorm.d from rnorm.c making dlnorm.d from dlnorm.c making plnorm.d from plnorm.c making qlnorm.d from qlnorm.c making rlnorm.d from rlnorm.c making df.d from df.c making pf.d from pf.c making qf.d from qf.c making rf.d from rf.c making dnf.d from dnf.c making dt.d from dt.c making pt.d from pt.c making qt.d from qt.c making rt.d from rt.c making dnt.d from dnt.c making dchisq.d from dchisq.c making pchisq.d from pchisq.c making qchisq.d from qchisq.c making rchisq.d from rchisq.c making rnchisq.d from rnchisq.c making dbinom.d from dbinom.c making pbinom.d from pbinom.c making qbinom.d from qbinom.c making rbinom.d from rbinom.c making rmultinom.d from rmultinom.c making dcauchy.d from dcauchy.c making pcauchy.d from pcauchy.c making qcauchy.d from qcauchy.c making rcauchy.d from rcauchy.c making dexp.d from dexp.c making pexp.d from pexp.c making qexp.d from qexp.c making rexp.d from rexp.c making dgeom.d from dgeom.c making pgeom.d from pgeom.c making qgeom.d from qgeom.c making rgeom.d from rgeom.c making dhyper.d from dhyper.c making phyper.d from phyper.c making qhyper.d from qhyper.c making rhyper.d from rhyper.c making dnbinom.d from dnbinom.c making pnbinom.d from pnbinom.c making qnbinom.d from qnbinom.c making qnbinom_mu.d from qnbinom_mu.c making rnbinom.d from rnbinom.c making dpois.d from dpois.c making ppois.d from ppois.c making qpois.d from qpois.c making rpois.d from rpois.c making dweibull.d from dweibull.c making pweibull.d from pweibull.c making qweibull.d from qweibull.c making rweibull.d from rweibull.c making dlogis.d from dlogis.c making plogis.d from plogis.c making qlogis.d from qlogis.c making rlogis.d from rlogis.c making dnchisq.d from dnchisq.c making pnchisq.d from pnchisq.c making qnchisq.d from qnchisq.c making dnbeta.d from dnbeta.c making pnbeta.d from pnbeta.c making qnbeta.d from qnbeta.c making pnf.d from pnf.c making pnt.d from pnt.c making qnf.d from qnf.c making qnt.d from qnt.c making ptukey.d from ptukey.c making qtukey.d from qtukey.c making toms708.d from toms708.c making wilcox.d from wilcox.c making signrank.d from signrank.c making std_unif.d from std_unif.c make[2]: Leaving directory '/<>/src/nmath/standalone' make[2]: Entering directory '/<>/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c mlutils.c -o mlutils.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c d1mach.c -o d1mach.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c i1mach.c -o i1mach.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fmax2.c -o fmax2.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fmin2.c -o fmin2.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fprec.c -o fprec.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fround.c -o fround.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ftrunc.c -o ftrunc.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c sign.c -o sign.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fsign.c -o fsign.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c imax2.c -o imax2.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c imin2.c -o imin2.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c chebyshev.c -o chebyshev.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c log1p.c -o log1p.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lgammacor.c -o lgammacor.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gammalims.c -o gammalims.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c stirlerr.c -o stirlerr.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bd0.c -o bd0.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gamma.c -o gamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lgamma.c -o lgamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gamma_cody.c -o gamma_cody.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c beta.c -o beta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lbeta.c -o lbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c polygamma.c -o polygamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c cospi.c -o cospi.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_i.c -o bessel_i.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_j.c -o bessel_j.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_k.c -o bessel_k.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_y.c -o bessel_y.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c choose.c -o choose.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c snorm.c -o snorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c sexp.c -o sexp.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dgamma.c -o dgamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pgamma.c -o pgamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qgamma.c -o qgamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rgamma.c -o rgamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dbeta.c -o dbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pbeta.c -o pbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qbeta.c -o qbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rbeta.c -o rbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dunif.c -o dunif.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c punif.c -o punif.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qunif.c -o qunif.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c runif.c -o runif.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnorm.c -o dnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnorm.c -o pnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnorm.c -o qnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnorm.c -o rnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dlnorm.c -o dlnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c plnorm.c -o plnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qlnorm.c -o qlnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rlnorm.c -o rlnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c df.c -o df.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pf.c -o pf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qf.c -o qf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rf.c -o rf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnf.c -o dnf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dt.c -o dt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pt.c -o pt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qt.c -o qt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rt.c -o rt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnt.c -o dnt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dchisq.c -o dchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pchisq.c -o pchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qchisq.c -o qchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rchisq.c -o rchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnchisq.c -o rnchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dbinom.c -o dbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pbinom.c -o pbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qbinom.c -o qbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rbinom.c -o rbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rmultinom.c -o rmultinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dcauchy.c -o dcauchy.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pcauchy.c -o pcauchy.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qcauchy.c -o qcauchy.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rcauchy.c -o rcauchy.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dexp.c -o dexp.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pexp.c -o pexp.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qexp.c -o qexp.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rexp.c -o rexp.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dgeom.c -o dgeom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pgeom.c -o pgeom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qgeom.c -o qgeom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rgeom.c -o rgeom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dhyper.c -o dhyper.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c phyper.c -o phyper.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qhyper.c -o qhyper.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rhyper.c -o rhyper.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnbinom.c -o dnbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnbinom.c -o pnbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnbinom.c -o qnbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnbinom_mu.c -o qnbinom_mu.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnbinom.c -o rnbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dpois.c -o dpois.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ppois.c -o ppois.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qpois.c -o qpois.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rpois.c -o rpois.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dweibull.c -o dweibull.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pweibull.c -o pweibull.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qweibull.c -o qweibull.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rweibull.c -o rweibull.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dlogis.c -o dlogis.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c plogis.c -o plogis.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qlogis.c -o qlogis.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rlogis.c -o rlogis.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnchisq.c -o dnchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnchisq.c -o pnchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnchisq.c -o qnchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnbeta.c -o dnbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnbeta.c -o pnbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnbeta.c -o qnbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnf.c -o pnf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnt.c -o pnt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnf.c -o qnf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnt.c -o qnt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ptukey.c -o ptukey.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qtukey.c -o qtukey.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c toms708.c -o toms708.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c wilcox.c -o wilcox.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c signrank.c -o signrank.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c std_unif.c -o std_unif.lo gcc -shared -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -o libRmath.so -Wl,-soname,libRmath.so.1 mlutils.lo d1mach.lo i1mach.lo fmax2.lo fmin2.lo fprec.lo fround.lo ftrunc.lo sign.lo fsign.lo imax2.lo imin2.lo chebyshev.lo log1p.lo lgammacor.lo gammalims.lo stirlerr.lo bd0.lo gamma.lo lgamma.lo gamma_cody.lo beta.lo lbeta.lo polygamma.lo cospi.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_y.lo choose.lo snorm.lo sexp.lo dgamma.lo pgamma.lo qgamma.lo rgamma.lo dbeta.lo pbeta.lo qbeta.lo rbeta.lo dunif.lo punif.lo qunif.lo runif.lo dnorm.lo pnorm.lo qnorm.lo rnorm.lo dlnorm.lo plnorm.lo qlnorm.lo rlnorm.lo df.lo pf.lo qf.lo rf.lo dnf.lo dt.lo pt.lo qt.lo rt.lo dnt.lo dchisq.lo pchisq.lo qchisq.lo rchisq.lo rnchisq.lo dbinom.lo pbinom.lo qbinom.lo rbinom.lo rmultinom.lo dcauchy.lo pcauchy.lo qcauchy.lo rcauchy.lo dexp.lo pexp.lo qexp.lo rexp.lo dgeom.lo pgeom.lo qgeom.lo rgeom.lo dhyper.lo phyper.lo qhyper.lo rhyper.lo dnbinom.lo pnbinom.lo qnbinom.lo qnbinom_mu.lo rnbinom.lo dpois.lo ppois.lo qpois.lo rpois.lo dweibull.lo pweibull.lo qweibull.lo rweibull.lo dlogis.lo plogis.lo qlogis.lo rlogis.lo dnchisq.lo pnchisq.lo qnchisq.lo dnbeta.lo pnbeta.lo qnbeta.lo pnf.lo pnt.lo qnf.lo qnt.lo ptukey.lo qtukey.lo toms708.lo wilcox.lo signrank.lo std_unif.lo -lm make[2]: Leaving directory '/<>/src/nmath/standalone' make[2]: Entering directory '/<>/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c mlutils.c -o mlutils.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c d1mach.c -o d1mach.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c i1mach.c -o i1mach.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fmax2.c -o fmax2.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fmin2.c -o fmin2.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fprec.c -o fprec.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fround.c -o fround.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ftrunc.c -o ftrunc.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c sign.c -o sign.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c fsign.c -o fsign.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c imax2.c -o imax2.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c imin2.c -o imin2.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c chebyshev.c -o chebyshev.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c log1p.c -o log1p.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lgammacor.c -o lgammacor.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gammalims.c -o gammalims.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c stirlerr.c -o stirlerr.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bd0.c -o bd0.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gamma.c -o gamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lgamma.c -o lgamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c gamma_cody.c -o gamma_cody.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c beta.c -o beta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c lbeta.c -o lbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c polygamma.c -o polygamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c cospi.c -o cospi.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_i.c -o bessel_i.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_j.c -o bessel_j.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_k.c -o bessel_k.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c bessel_y.c -o bessel_y.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c choose.c -o choose.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c snorm.c -o snorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c sexp.c -o sexp.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dgamma.c -o dgamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pgamma.c -o pgamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qgamma.c -o qgamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rgamma.c -o rgamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dbeta.c -o dbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pbeta.c -o pbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qbeta.c -o qbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rbeta.c -o rbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dunif.c -o dunif.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c punif.c -o punif.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qunif.c -o qunif.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c runif.c -o runif.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnorm.c -o dnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnorm.c -o pnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnorm.c -o qnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnorm.c -o rnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dlnorm.c -o dlnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c plnorm.c -o plnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qlnorm.c -o qlnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rlnorm.c -o rlnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c df.c -o df.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pf.c -o pf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qf.c -o qf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rf.c -o rf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnf.c -o dnf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dt.c -o dt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pt.c -o pt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qt.c -o qt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rt.c -o rt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnt.c -o dnt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dchisq.c -o dchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pchisq.c -o pchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qchisq.c -o qchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rchisq.c -o rchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnchisq.c -o rnchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dbinom.c -o dbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pbinom.c -o pbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qbinom.c -o qbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rbinom.c -o rbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rmultinom.c -o rmultinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dcauchy.c -o dcauchy.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pcauchy.c -o pcauchy.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qcauchy.c -o qcauchy.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rcauchy.c -o rcauchy.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dexp.c -o dexp.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pexp.c -o pexp.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qexp.c -o qexp.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rexp.c -o rexp.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dgeom.c -o dgeom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pgeom.c -o pgeom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qgeom.c -o qgeom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rgeom.c -o rgeom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dhyper.c -o dhyper.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c phyper.c -o phyper.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qhyper.c -o qhyper.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rhyper.c -o rhyper.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnbinom.c -o dnbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnbinom.c -o pnbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnbinom.c -o qnbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnbinom_mu.c -o qnbinom_mu.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rnbinom.c -o rnbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dpois.c -o dpois.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ppois.c -o ppois.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qpois.c -o qpois.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rpois.c -o rpois.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dweibull.c -o dweibull.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pweibull.c -o pweibull.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qweibull.c -o qweibull.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rweibull.c -o rweibull.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dlogis.c -o dlogis.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c plogis.c -o plogis.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qlogis.c -o qlogis.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c rlogis.c -o rlogis.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnchisq.c -o dnchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnchisq.c -o pnchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnchisq.c -o qnchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c dnbeta.c -o dnbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnbeta.c -o pnbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnbeta.c -o qnbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnf.c -o pnf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c pnt.c -o pnt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnf.c -o qnf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qnt.c -o qnt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c ptukey.c -o ptukey.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c qtukey.c -o qtukey.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c toms708.c -o toms708.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c wilcox.c -o wilcox.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c signrank.c -o signrank.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -c std_unif.c -o std_unif.o ar -cr libRmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o qnbinom_mu.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o std_unif.o ranlib libRmath.a make[2]: Leaving directory '/<>/src/nmath/standalone' make[1]: Leaving directory '/<>/src/nmath/standalone' R_GZIPCMD="/bin/gzip -n" \ /usr/bin/make docs R_CMD_BUILD_HELP_OPTS="--txt --example" make[1]: Entering directory '/<>' make[2]: Entering directory '/<>/m4' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/<>/m4' make[2]: Entering directory '/<>/tools' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/<>/tools' make[2]: Entering directory '/<>/doc' make[3]: Entering directory '/<>/doc/html' make[3]: Leaving directory '/<>/doc/html' make[3]: Entering directory '/<>/doc/manual' make[3]: Nothing to be done for 'R'. make[3]: Leaving directory '/<>/doc/manual' make[2]: Leaving directory '/<>/doc' make[2]: Entering directory '/<>/etc' make[2]: Leaving directory '/<>/etc' make[2]: Entering directory '/<>/share' make[2]: Leaving directory '/<>/share' make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src/scripts' make[4]: Entering directory '/<>/src/scripts' make[4]: Leaving directory '/<>/src/scripts' make[3]: Leaving directory '/<>/src/scripts' make[3]: Entering directory '/<>/src/include' make[4]: Entering directory '/<>/src/include/R_ext' make[4]: Nothing to be done for 'R'. make[4]: Leaving directory '/<>/src/include/R_ext' make[3]: Leaving directory '/<>/src/include' make[3]: Entering directory '/<>/src/extra' make[4]: Entering directory '/<>/src/extra/tre' make[5]: Entering directory '/<>/src/extra/tre' make[5]: 'Makedeps' is up to date. make[5]: Leaving directory '/<>/src/extra/tre' make[5]: Entering directory '/<>/src/extra/tre' make[5]: 'libtre.a' is up to date. make[5]: Leaving directory '/<>/src/extra/tre' make[4]: Leaving directory '/<>/src/extra/tre' make[3]: Leaving directory '/<>/src/extra' make[3]: Entering directory '/<>/src/appl' make[4]: Entering directory '/<>/src/appl' make[4]: 'libappl.a' is up to date. make[4]: Leaving directory '/<>/src/appl' #@/usr/bin/make install-Linpack make[3]: Leaving directory '/<>/src/appl' make[3]: Entering directory '/<>/src/nmath' make[4]: Entering directory '/<>/src/nmath' make[4]: 'libnmath.a' is up to date. make[4]: Leaving directory '/<>/src/nmath' make[3]: Leaving directory '/<>/src/nmath' make[3]: Entering directory '/<>/src/unix' make[4]: Entering directory '/<>/src/unix' make[4]: 'libunix.a' is up to date. make[4]: Leaving directory '/<>/src/unix' make[4]: Entering directory '/<>/src/unix' gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wl,-Bsymbolic-functions -Wl,-z,relro -DR_HOME='"/<>"' \ -o Rscript ./Rscript.c make[4]: Leaving directory '/<>/src/unix' make[3]: Leaving directory '/<>/src/unix' make[3]: Entering directory '/<>/src/main' make[4]: Entering directory '/<>/src/main' make[5]: Entering directory '/<>/src/main' /<>/lib/libR.so is unchanged make[5]: Leaving directory '/<>/src/main' make[4]: Leaving directory '/<>/src/main' make[4]: Entering directory '/<>/src/main' make[5]: Entering directory '/<>/src/main' /<>/bin/exec/R is unchanged make[5]: Leaving directory '/<>/src/main' make[4]: Leaving directory '/<>/src/main' make[3]: Leaving directory '/<>/src/main' make[3]: Entering directory '/<>/src/modules' make[4]: Entering directory '/<>/src/modules/internet' make[5]: Entering directory '/<>/src/modules/internet' make[5]: 'internet.so' is up to date. make[5]: Leaving directory '/<>/src/modules/internet' make[4]: Leaving directory '/<>/src/modules/internet' make[4]: Entering directory '/<>/src/modules/lapack' make[5]: Entering directory '/<>/src/modules/lapack' make[5]: 'lapack.so' is up to date. make[5]: Leaving directory '/<>/src/modules/lapack' make[4]: Leaving directory '/<>/src/modules/lapack' make[4]: Entering directory '/<>/src/modules/X11' make[5]: Entering directory '/<>/src/modules/X11' make[5]: 'R_X11.so' is up to date. make[5]: 'R_de.so' is up to date. make[5]: Leaving directory '/<>/src/modules/X11' make[5]: Entering directory '/<>/src/modules/X11' /<>/modules/R_X11.so is unchanged /<>/modules/R_de.so is unchanged make[5]: Leaving directory '/<>/src/modules/X11' make[4]: Leaving directory '/<>/src/modules/X11' make[3]: Leaving directory '/<>/src/modules' make[3]: Entering directory '/<>/src/library' make[4]: Entering directory '/<>/src/library/profile' building system startup profile make[4]: Leaving directory '/<>/src/library/profile' make[4]: Entering directory '/<>/src/library/translations' building package 'translations' make[5]: Entering directory '/<>/src/library/translations' make[5]: Leaving directory '/<>/src/library/translations' make[4]: Leaving directory '/<>/src/library/translations' make[4]: Entering directory '/<>/src/library/base' building package 'base' make[5]: Entering directory '/<>/src/library/base' all.R is unchanged make[5]: Leaving directory '/<>/src/library/base' make[4]: Leaving directory '/<>/src/library/base' make[4]: Entering directory '/<>/src/library/tools' building package 'tools' make[5]: Entering directory '/<>/src/library/tools' all.R is unchanged make[5]: Leaving directory '/<>/src/library/tools' make[5]: Entering directory '/<>/src/library/tools' make[6]: Entering directory '/<>/src/library/tools/src' make[7]: Entering directory '/<>/src/library/tools/src' ../../../../library/tools/libs/tools.so is unchanged make[7]: Leaving directory '/<>/src/library/tools/src' make[6]: Leaving directory '/<>/src/library/tools/src' make[5]: Leaving directory '/<>/src/library/tools' make[5]: Entering directory '/<>/src/library/tools' installing 'sysdata.rda' make[5]: Leaving directory '/<>/src/library/tools' make[4]: Leaving directory '/<>/src/library/tools' make[4]: Entering directory '/<>/src/library/compiler' building package 'compiler' make[5]: Entering directory '/<>/src/library/compiler' all.R is unchanged make[5]: Leaving directory '/<>/src/library/compiler' make[5]: Entering directory '/<>/src/library/compiler' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/compiler' make[4]: Leaving directory '/<>/src/library/compiler' make[4]: Entering directory '/<>/src/library/base' make[4]: Nothing to be done for 'mklazycomp'. make[4]: Leaving directory '/<>/src/library/base' make[4]: Entering directory '/<>/src/library/tools' make[4]: Nothing to be done for 'mklazycomp'. make[4]: Leaving directory '/<>/src/library/tools' make[4]: Entering directory '/<>/src/library/utils' building package 'utils' make[5]: Entering directory '/<>/src/library/utils' all.R is unchanged make[5]: Nothing to be done for 'iconvlist'. make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' make[6]: Entering directory '/<>/src/library/utils/src' make[7]: Entering directory '/<>/src/library/utils/src' ../../../../library/utils/libs/utils.so is unchanged make[7]: Leaving directory '/<>/src/library/utils/src' make[6]: Leaving directory '/<>/src/library/utils/src' make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' installing 'sysdata.rda' make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/utils' make[4]: Leaving directory '/<>/src/library/utils' make[4]: Entering directory '/<>/src/library/grDevices' building package 'grDevices' make[5]: Entering directory '/<>/src/library/grDevices' all.R is unchanged make[5]: Leaving directory '/<>/src/library/grDevices' make[5]: Entering directory '/<>/src/library/grDevices' make[6]: Entering directory '/<>/src/library/grDevices/src' make[7]: Entering directory '/<>/src/library/grDevices/src' ../../../../library/grDevices/libs/grDevices.so is unchanged make[8]: Entering directory '/<>/src/library/grDevices/src/cairo' make[9]: Entering directory '/<>/src/library/grDevices/src/cairo' make[10]: Entering directory '/<>/src/library/grDevices/src/cairo' make[10]: 'cairo.so' is up to date. make[10]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[9]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[8]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[7]: Leaving directory '/<>/src/library/grDevices/src' make[6]: Leaving directory '/<>/src/library/grDevices/src' make[5]: Leaving directory '/<>/src/library/grDevices' make[5]: Entering directory '/<>/src/library/grDevices' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/grDevices' make[4]: Leaving directory '/<>/src/library/grDevices' make[4]: Entering directory '/<>/src/library/graphics' building package 'graphics' make[5]: Entering directory '/<>/src/library/graphics' all.R is unchanged make[5]: Leaving directory '/<>/src/library/graphics' make[5]: Entering directory '/<>/src/library/graphics' make[6]: Entering directory '/<>/src/library/graphics/src' make[7]: Entering directory '/<>/src/library/graphics/src' ../../../../library/graphics/libs/graphics.so is unchanged make[7]: Leaving directory '/<>/src/library/graphics/src' make[6]: Leaving directory '/<>/src/library/graphics/src' make[5]: Leaving directory '/<>/src/library/graphics' make[5]: Entering directory '/<>/src/library/graphics' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/graphics' make[4]: Leaving directory '/<>/src/library/graphics' make[4]: Entering directory '/<>/src/library/stats' building package 'stats' make[5]: Entering directory '/<>/src/library/stats' all.R is unchanged make[5]: Leaving directory '/<>/src/library/stats' make[5]: Entering directory '/<>/src/library/stats' make[6]: Entering directory '/<>/src/library/stats/src' make[7]: Entering directory '/<>/src/library/stats/src' ../../../../library/stats/libs/stats.so is unchanged make[7]: Leaving directory '/<>/src/library/stats/src' make[6]: Leaving directory '/<>/src/library/stats/src' make[5]: Leaving directory '/<>/src/library/stats' make[5]: Entering directory '/<>/src/library/stats' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/stats' make[4]: Leaving directory '/<>/src/library/stats' make[4]: Entering directory '/<>/src/library/datasets' building package 'datasets' make[5]: Entering directory '/<>/src/library/datasets' make[5]: Leaving directory '/<>/src/library/datasets' make[4]: Leaving directory '/<>/src/library/datasets' make[4]: Entering directory '/<>/src/library/methods' building package 'methods' make[5]: Entering directory '/<>/src/library/methods' all.R is unchanged make[5]: Leaving directory '/<>/src/library/methods' make[5]: Entering directory '/<>/src/library/methods' make[6]: Entering directory '/<>/src/library/methods/src' make[7]: Entering directory '/<>/src/library/methods/src' ../../../../library/methods/libs/methods.so is unchanged make[7]: Leaving directory '/<>/src/library/methods/src' make[6]: Leaving directory '/<>/src/library/methods/src' make[5]: Leaving directory '/<>/src/library/methods' make[5]: Entering directory '/<>/src/library/methods' make[5]: Nothing to be done for 'RfilesLazy'. make[5]: Leaving directory '/<>/src/library/methods' make[4]: Leaving directory '/<>/src/library/methods' make[4]: Entering directory '/<>/src/library/grid' building package 'grid' make[5]: Entering directory '/<>/src/library/grid' all.R is unchanged make[5]: Leaving directory '/<>/src/library/grid' make[5]: Entering directory '/<>/src/library/grid' make[6]: Entering directory '/<>/src/library/grid/src' make[7]: Entering directory '/<>/src/library/grid/src' ../../../../library/grid/libs/grid.so is unchanged make[7]: Leaving directory '/<>/src/library/grid/src' make[6]: Leaving directory '/<>/src/library/grid/src' make[5]: Leaving directory '/<>/src/library/grid' make[5]: Entering directory '/<>/src/library/grid' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/grid' make[4]: Leaving directory '/<>/src/library/grid' make[4]: Entering directory '/<>/src/library/splines' building package 'splines' make[5]: Entering directory '/<>/src/library/splines' all.R is unchanged make[5]: Leaving directory '/<>/src/library/splines' make[5]: Entering directory '/<>/src/library/splines' make[6]: Entering directory '/<>/src/library/splines/src' make[7]: Entering directory '/<>/src/library/splines/src' ../../../../library/splines/libs/splines.so is unchanged make[7]: Leaving directory '/<>/src/library/splines/src' make[6]: Leaving directory '/<>/src/library/splines/src' make[5]: Leaving directory '/<>/src/library/splines' make[5]: Entering directory '/<>/src/library/splines' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/splines' make[4]: Leaving directory '/<>/src/library/splines' make[4]: Entering directory '/<>/src/library/stats4' building package 'stats4' make[5]: Entering directory '/<>/src/library/stats4' all.R is unchanged make[5]: Leaving directory '/<>/src/library/stats4' make[5]: Entering directory '/<>/src/library/stats4' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/stats4' make[4]: Leaving directory '/<>/src/library/stats4' make[4]: Entering directory '/<>/src/library/tcltk' building package 'tcltk' all.R is unchanged make[5]: Entering directory '/<>/src/library/tcltk' make[5]: Leaving directory '/<>/src/library/tcltk' make[5]: Entering directory '/<>/src/library/tcltk/src' make[6]: Entering directory '/<>/src/library/tcltk/src' ../../../../library/tcltk/libs/tcltk.so is unchanged make[6]: Leaving directory '/<>/src/library/tcltk/src' make[5]: Leaving directory '/<>/src/library/tcltk/src' make[5]: Entering directory '/<>/src/library/tcltk' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/tcltk' make[4]: Leaving directory '/<>/src/library/tcltk' make[4]: Entering directory '/<>/src/library/parallel' building package 'parallel' make[5]: Entering directory '/<>/src/library/parallel' all.R is unchanged make[5]: Leaving directory '/<>/src/library/parallel' make[5]: Entering directory '/<>/src/library/parallel' make[6]: Entering directory '/<>/src/library/parallel/src' make[7]: Entering directory '/<>/src/library/parallel/src' ../../../../library/parallel/libs/parallel.so is unchanged make[7]: Leaving directory '/<>/src/library/parallel/src' make[6]: Leaving directory '/<>/src/library/parallel/src' make[5]: Leaving directory '/<>/src/library/parallel' make[5]: Entering directory '/<>/src/library/parallel' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/parallel' make[4]: Leaving directory '/<>/src/library/parallel' make[4]: Entering directory '/<>/src/library/base' make[4]: Leaving directory '/<>/src/library/base' installing parsed NAMESPACE files make[3]: Leaving directory '/<>/src/library' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>/tests' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/<>/tests' you should 'make docs' now ... make[2]: Entering directory '/<>/doc' creating doc/NEWS creating doc/NEWS.pdf make[3]: Entering directory '/<>/doc/manual' creating doc/manual/R-FAQ.html creating doc/manual/version.texi creating doc/manual/R-admin.html creating doc/manual/R-data.html creating doc/manual/R-exts.html creating doc/manual/R-intro.html creating doc/manual/R-ints.html creating doc/manual/R-lang.html make[4]: Entering directory '/<>/doc/html' make[4]: Leaving directory '/<>/doc/html' make[3]: Leaving directory '/<>/doc/manual' make[2]: Leaving directory '/<>/doc' make[2]: Entering directory '/<>/src/library' make[3]: Entering directory '/<>/src/library' installing parsed Rd make[4]: Entering directory '/<>/src/library' base stats utils methods graphics grDevices datasets grid tools tcltk splines stats4 compiler parallel make[4]: Leaving directory '/<>/src/library' make[3]: Leaving directory '/<>/src/library' make[3]: Entering directory '/<>/src/library' building/updating package metadata ... make[3]: Leaving directory '/<>/src/library' make[3]: Entering directory '/<>/src/library' writing package indices make[4]: Entering directory '/<>/src/library' make[4]: Leaving directory '/<>/src/library' make[3]: Leaving directory '/<>/src/library' make[2]: Leaving directory '/<>/src/library' make[1]: Leaving directory '/<>' /usr/bin/make javaconf make[1]: Entering directory '/<>' make[2]: Entering directory '/<>/m4' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/<>/m4' make[2]: Entering directory '/<>/tools' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/<>/tools' make[2]: Entering directory '/<>/doc' make[3]: Entering directory '/<>/doc/html' make[3]: Leaving directory '/<>/doc/html' make[3]: Entering directory '/<>/doc/manual' make[3]: Nothing to be done for 'R'. make[3]: Leaving directory '/<>/doc/manual' make[2]: Leaving directory '/<>/doc' make[2]: Entering directory '/<>/etc' make[2]: Leaving directory '/<>/etc' make[2]: Entering directory '/<>/share' make[2]: Leaving directory '/<>/share' make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src/scripts' make[4]: Entering directory '/<>/src/scripts' make[4]: Leaving directory '/<>/src/scripts' make[3]: Leaving directory '/<>/src/scripts' make[3]: Entering directory '/<>/src/include' make[4]: Entering directory '/<>/src/include/R_ext' make[4]: Nothing to be done for 'R'. make[4]: Leaving directory '/<>/src/include/R_ext' make[3]: Leaving directory '/<>/src/include' make[3]: Entering directory '/<>/src/extra' make[4]: Entering directory '/<>/src/extra/tre' make[5]: Entering directory '/<>/src/extra/tre' make[5]: 'Makedeps' is up to date. make[5]: Leaving directory '/<>/src/extra/tre' make[5]: Entering directory '/<>/src/extra/tre' make[5]: 'libtre.a' is up to date. make[5]: Leaving directory '/<>/src/extra/tre' make[4]: Leaving directory '/<>/src/extra/tre' make[3]: Leaving directory '/<>/src/extra' make[3]: Entering directory '/<>/src/appl' make[4]: Entering directory '/<>/src/appl' make[4]: 'libappl.a' is up to date. make[4]: Leaving directory '/<>/src/appl' #@/usr/bin/make install-Linpack make[3]: Leaving directory '/<>/src/appl' make[3]: Entering directory '/<>/src/nmath' make[4]: Entering directory '/<>/src/nmath' make[4]: 'libnmath.a' is up to date. make[4]: Leaving directory '/<>/src/nmath' make[3]: Leaving directory '/<>/src/nmath' make[3]: Entering directory '/<>/src/unix' make[4]: Entering directory '/<>/src/unix' make[4]: 'libunix.a' is up to date. make[4]: Leaving directory '/<>/src/unix' make[4]: Entering directory '/<>/src/unix' gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wl,-Bsymbolic-functions -Wl,-z,relro -DR_HOME='"/<>"' \ -o Rscript ./Rscript.c make[4]: Leaving directory '/<>/src/unix' make[3]: Leaving directory '/<>/src/unix' make[3]: Entering directory '/<>/src/main' make[4]: Entering directory '/<>/src/main' make[5]: Entering directory '/<>/src/main' /<>/lib/libR.so is unchanged make[5]: Leaving directory '/<>/src/main' make[4]: Leaving directory '/<>/src/main' make[4]: Entering directory '/<>/src/main' make[5]: Entering directory '/<>/src/main' /<>/bin/exec/R is unchanged make[5]: Leaving directory '/<>/src/main' make[4]: Leaving directory '/<>/src/main' make[3]: Leaving directory '/<>/src/main' make[3]: Entering directory '/<>/src/modules' make[4]: Entering directory '/<>/src/modules/internet' make[5]: Entering directory '/<>/src/modules/internet' make[5]: 'internet.so' is up to date. make[5]: Leaving directory '/<>/src/modules/internet' make[4]: Leaving directory '/<>/src/modules/internet' make[4]: Entering directory '/<>/src/modules/lapack' make[5]: Entering directory '/<>/src/modules/lapack' make[5]: 'lapack.so' is up to date. make[5]: Leaving directory '/<>/src/modules/lapack' make[4]: Leaving directory '/<>/src/modules/lapack' make[4]: Entering directory '/<>/src/modules/X11' make[5]: Entering directory '/<>/src/modules/X11' make[5]: 'R_X11.so' is up to date. make[5]: 'R_de.so' is up to date. make[5]: Leaving directory '/<>/src/modules/X11' make[5]: Entering directory '/<>/src/modules/X11' /<>/modules/R_X11.so is unchanged /<>/modules/R_de.so is unchanged make[5]: Leaving directory '/<>/src/modules/X11' make[4]: Leaving directory '/<>/src/modules/X11' make[3]: Leaving directory '/<>/src/modules' make[3]: Entering directory '/<>/src/library' make[4]: Entering directory '/<>/src/library/profile' building system startup profile make[4]: Leaving directory '/<>/src/library/profile' make[4]: Entering directory '/<>/src/library/translations' building package 'translations' make[5]: Entering directory '/<>/src/library/translations' make[5]: Leaving directory '/<>/src/library/translations' make[4]: Leaving directory '/<>/src/library/translations' make[4]: Entering directory '/<>/src/library/base' building package 'base' make[5]: Entering directory '/<>/src/library/base' all.R is unchanged make[5]: Leaving directory '/<>/src/library/base' make[4]: Leaving directory '/<>/src/library/base' make[4]: Entering directory '/<>/src/library/tools' building package 'tools' make[5]: Entering directory '/<>/src/library/tools' all.R is unchanged make[5]: Leaving directory '/<>/src/library/tools' make[5]: Entering directory '/<>/src/library/tools' make[6]: Entering directory '/<>/src/library/tools/src' make[7]: Entering directory '/<>/src/library/tools/src' ../../../../library/tools/libs/tools.so is unchanged make[7]: Leaving directory '/<>/src/library/tools/src' make[6]: Leaving directory '/<>/src/library/tools/src' make[5]: Leaving directory '/<>/src/library/tools' make[5]: Entering directory '/<>/src/library/tools' installing 'sysdata.rda' make[5]: Leaving directory '/<>/src/library/tools' make[4]: Leaving directory '/<>/src/library/tools' make[4]: Entering directory '/<>/src/library/compiler' building package 'compiler' make[5]: Entering directory '/<>/src/library/compiler' all.R is unchanged make[5]: Leaving directory '/<>/src/library/compiler' make[5]: Entering directory '/<>/src/library/compiler' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/compiler' make[4]: Leaving directory '/<>/src/library/compiler' make[4]: Entering directory '/<>/src/library/base' make[4]: Nothing to be done for 'mklazycomp'. make[4]: Leaving directory '/<>/src/library/base' make[4]: Entering directory '/<>/src/library/tools' make[4]: Nothing to be done for 'mklazycomp'. make[4]: Leaving directory '/<>/src/library/tools' make[4]: Entering directory '/<>/src/library/utils' building package 'utils' make[5]: Entering directory '/<>/src/library/utils' all.R is unchanged make[5]: Nothing to be done for 'iconvlist'. make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' make[6]: Entering directory '/<>/src/library/utils/src' make[7]: Entering directory '/<>/src/library/utils/src' ../../../../library/utils/libs/utils.so is unchanged make[7]: Leaving directory '/<>/src/library/utils/src' make[6]: Leaving directory '/<>/src/library/utils/src' make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' installing 'sysdata.rda' make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/utils' make[4]: Leaving directory '/<>/src/library/utils' make[4]: Entering directory '/<>/src/library/grDevices' building package 'grDevices' make[5]: Entering directory '/<>/src/library/grDevices' all.R is unchanged make[5]: Leaving directory '/<>/src/library/grDevices' make[5]: Entering directory '/<>/src/library/grDevices' make[6]: Entering directory '/<>/src/library/grDevices/src' make[7]: Entering directory '/<>/src/library/grDevices/src' ../../../../library/grDevices/libs/grDevices.so is unchanged make[8]: Entering directory '/<>/src/library/grDevices/src/cairo' make[9]: Entering directory '/<>/src/library/grDevices/src/cairo' make[10]: Entering directory '/<>/src/library/grDevices/src/cairo' make[10]: 'cairo.so' is up to date. make[10]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[9]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[8]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[7]: Leaving directory '/<>/src/library/grDevices/src' make[6]: Leaving directory '/<>/src/library/grDevices/src' make[5]: Leaving directory '/<>/src/library/grDevices' make[5]: Entering directory '/<>/src/library/grDevices' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/grDevices' make[4]: Leaving directory '/<>/src/library/grDevices' make[4]: Entering directory '/<>/src/library/graphics' building package 'graphics' make[5]: Entering directory '/<>/src/library/graphics' all.R is unchanged make[5]: Leaving directory '/<>/src/library/graphics' make[5]: Entering directory '/<>/src/library/graphics' make[6]: Entering directory '/<>/src/library/graphics/src' make[7]: Entering directory '/<>/src/library/graphics/src' ../../../../library/graphics/libs/graphics.so is unchanged make[7]: Leaving directory '/<>/src/library/graphics/src' make[6]: Leaving directory '/<>/src/library/graphics/src' make[5]: Leaving directory '/<>/src/library/graphics' make[5]: Entering directory '/<>/src/library/graphics' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/graphics' make[4]: Leaving directory '/<>/src/library/graphics' make[4]: Entering directory '/<>/src/library/stats' building package 'stats' make[5]: Entering directory '/<>/src/library/stats' all.R is unchanged make[5]: Leaving directory '/<>/src/library/stats' make[5]: Entering directory '/<>/src/library/stats' make[6]: Entering directory '/<>/src/library/stats/src' make[7]: Entering directory '/<>/src/library/stats/src' ../../../../library/stats/libs/stats.so is unchanged make[7]: Leaving directory '/<>/src/library/stats/src' make[6]: Leaving directory '/<>/src/library/stats/src' make[5]: Leaving directory '/<>/src/library/stats' make[5]: Entering directory '/<>/src/library/stats' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/stats' make[4]: Leaving directory '/<>/src/library/stats' make[4]: Entering directory '/<>/src/library/datasets' building package 'datasets' make[5]: Entering directory '/<>/src/library/datasets' make[5]: Leaving directory '/<>/src/library/datasets' make[4]: Leaving directory '/<>/src/library/datasets' make[4]: Entering directory '/<>/src/library/methods' building package 'methods' make[5]: Entering directory '/<>/src/library/methods' all.R is unchanged make[5]: Leaving directory '/<>/src/library/methods' make[5]: Entering directory '/<>/src/library/methods' make[6]: Entering directory '/<>/src/library/methods/src' make[7]: Entering directory '/<>/src/library/methods/src' ../../../../library/methods/libs/methods.so is unchanged make[7]: Leaving directory '/<>/src/library/methods/src' make[6]: Leaving directory '/<>/src/library/methods/src' make[5]: Leaving directory '/<>/src/library/methods' make[5]: Entering directory '/<>/src/library/methods' make[5]: Nothing to be done for 'RfilesLazy'. make[5]: Leaving directory '/<>/src/library/methods' make[4]: Leaving directory '/<>/src/library/methods' make[4]: Entering directory '/<>/src/library/grid' building package 'grid' make[5]: Entering directory '/<>/src/library/grid' all.R is unchanged make[5]: Leaving directory '/<>/src/library/grid' make[5]: Entering directory '/<>/src/library/grid' make[6]: Entering directory '/<>/src/library/grid/src' make[7]: Entering directory '/<>/src/library/grid/src' ../../../../library/grid/libs/grid.so is unchanged make[7]: Leaving directory '/<>/src/library/grid/src' make[6]: Leaving directory '/<>/src/library/grid/src' make[5]: Leaving directory '/<>/src/library/grid' make[5]: Entering directory '/<>/src/library/grid' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/grid' make[4]: Leaving directory '/<>/src/library/grid' make[4]: Entering directory '/<>/src/library/splines' building package 'splines' make[5]: Entering directory '/<>/src/library/splines' all.R is unchanged make[5]: Leaving directory '/<>/src/library/splines' make[5]: Entering directory '/<>/src/library/splines' make[6]: Entering directory '/<>/src/library/splines/src' make[7]: Entering directory '/<>/src/library/splines/src' ../../../../library/splines/libs/splines.so is unchanged make[7]: Leaving directory '/<>/src/library/splines/src' make[6]: Leaving directory '/<>/src/library/splines/src' make[5]: Leaving directory '/<>/src/library/splines' make[5]: Entering directory '/<>/src/library/splines' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/splines' make[4]: Leaving directory '/<>/src/library/splines' make[4]: Entering directory '/<>/src/library/stats4' building package 'stats4' make[5]: Entering directory '/<>/src/library/stats4' all.R is unchanged make[5]: Leaving directory '/<>/src/library/stats4' make[5]: Entering directory '/<>/src/library/stats4' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/stats4' make[4]: Leaving directory '/<>/src/library/stats4' make[4]: Entering directory '/<>/src/library/tcltk' building package 'tcltk' all.R is unchanged make[5]: Entering directory '/<>/src/library/tcltk' make[5]: Leaving directory '/<>/src/library/tcltk' make[5]: Entering directory '/<>/src/library/tcltk/src' make[6]: Entering directory '/<>/src/library/tcltk/src' ../../../../library/tcltk/libs/tcltk.so is unchanged make[6]: Leaving directory '/<>/src/library/tcltk/src' make[5]: Leaving directory '/<>/src/library/tcltk/src' make[5]: Entering directory '/<>/src/library/tcltk' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/tcltk' make[4]: Leaving directory '/<>/src/library/tcltk' make[4]: Entering directory '/<>/src/library/parallel' building package 'parallel' make[5]: Entering directory '/<>/src/library/parallel' all.R is unchanged make[5]: Leaving directory '/<>/src/library/parallel' make[5]: Entering directory '/<>/src/library/parallel' make[6]: Entering directory '/<>/src/library/parallel/src' make[7]: Entering directory '/<>/src/library/parallel/src' ../../../../library/parallel/libs/parallel.so is unchanged make[7]: Leaving directory '/<>/src/library/parallel/src' make[6]: Leaving directory '/<>/src/library/parallel/src' make[5]: Leaving directory '/<>/src/library/parallel' make[5]: Entering directory '/<>/src/library/parallel' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/parallel' make[4]: Leaving directory '/<>/src/library/parallel' make[4]: Entering directory '/<>/src/library/base' make[4]: Leaving directory '/<>/src/library/base' installing parsed NAMESPACE files make[3]: Leaving directory '/<>/src/library' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>/tests' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/<>/tests' make[2]: Entering directory '/<>' configuring Java ... Java interpreter : /usr/lib/jvm/default-java/bin/java Java version : 11.0.13 Java home path : /usr/lib/jvm/default-java Java compiler : /usr/lib/jvm/default-java/bin/javac Java headers gen.: Java archive tool: /usr/lib/jvm/default-java/bin/jar trying to compile and link a JNI program detected JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux detected JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm make[3]: Entering directory '/tmp/Rjavareconf.j8a9hS' gcc -I"/<>/include" -DNDEBUG -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -fpic -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c conftest.c -o conftest.o gcc -shared -L/<>/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o conftest.so conftest.o -L/usr/lib/jvm/default-java/lib/server -ljvm -L/<>/lib -lR make[3]: Leaving directory '/tmp/Rjavareconf.j8a9hS' JAVA_HOME : /usr/lib/jvm/default-java Java library path: $(JAVA_HOME)/lib/server JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm Updating Java configuration in /<> Done. make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' touch make-arch-stamp fakeroot debian/rules binary-arch *** install-arch *** dh_testdir dh_testroot dh_prep -a dh_installdirs -A /<>/debian/r-base-core /usr/bin/make DESTDIR=/<>/debian/r-base-core install make[1]: Entering directory '/<>' make[2]: Entering directory '/<>/m4' make[2]: Nothing to be done for 'install'. make[2]: Leaving directory '/<>/m4' make[2]: Entering directory '/<>/tools' make[2]: Nothing to be done for 'install'. make[2]: Leaving directory '/<>/tools' make[2]: Entering directory '/<>/doc' installing doc ... mkdir -p -- /<>/debian/r-base-core/usr/share/R/doc mkdir -p -- /<>/debian/r-base-core/usr/share/man/man1 make[3]: Entering directory '/<>/doc/html' installing doc/html ... mkdir -p -- /<>/debian/r-base-core/usr/share/R/doc/html make[3]: Leaving directory '/<>/doc/html' make[3]: Entering directory '/<>/doc/manual' installing doc/manual ... mkdir -p -- /<>/debian/r-base-core/usr/share/R/doc/manual mkdir -p -- /<>/debian/r-base-core/usr/share/R/doc/manual/images make[3]: Leaving directory '/<>/doc/manual' make[2]: Leaving directory '/<>/doc' make[2]: Entering directory '/<>/etc' mkdir -p -- /<>/debian/r-base-core/usr/lib/R/etc installing etc ... make[2]: Leaving directory '/<>/etc' make[2]: Entering directory '/<>/share' installing share ... mkdir -p -- /<>/debian/r-base-core/usr/share/R/share mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/R mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/dictionaries mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/encodings mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/java mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/licenses mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/make mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/Rd mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/Rd/macros mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/sh mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/texmf mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/texmf/bibtex/bib mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/texmf/bibtex/bst mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/texmf/tex/latex make[2]: Leaving directory '/<>/share' make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src/scripts' mkdir -p -- /<>/debian/r-base-core/usr/lib/R/bin make[3]: Leaving directory '/<>/src/scripts' make[3]: Entering directory '/<>/src/include' make[4]: Entering directory '/<>/src/include/R_ext' mkdir -p -- /<>/debian/r-base-core/usr/share/R/include/R_ext make[4]: Leaving directory '/<>/src/include/R_ext' make[3]: Leaving directory '/<>/src/include' make[3]: Entering directory '/<>/src/extra' make[4]: Entering directory '/<>/src/extra/blas' make[4]: Nothing to be done for 'install'. make[4]: Leaving directory '/<>/src/extra/blas' make[4]: Entering directory '/<>/src/extra/tre' make[4]: Nothing to be done for 'install'. make[4]: Leaving directory '/<>/src/extra/tre' make[4]: Entering directory '/<>/src/extra/tzone' make[4]: Nothing to be done for 'install'. make[4]: Leaving directory '/<>/src/extra/tzone' make[4]: Entering directory '/<>/src/extra/xdr' make[4]: Nothing to be done for 'install'. make[4]: Leaving directory '/<>/src/extra/xdr' make[4]: Entering directory '/<>/src/extra/intl' make[4]: Nothing to be done for 'install'. make[4]: Leaving directory '/<>/src/extra/intl' make[3]: Leaving directory '/<>/src/extra' make[3]: Entering directory '/<>/src/appl' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/<>/src/appl' make[3]: Entering directory '/<>/src/nmath' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/<>/src/nmath' make[3]: Entering directory '/<>/src/unix' gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wl,-Bsymbolic-functions -Wl,-z,relro -DR_HOME='"/usr/lib/R"' \ -o Rscript ./Rscript.c mkdir -p -- /<>/debian/r-base-core/usr/lib/pkgconfig make[3]: Leaving directory '/<>/src/unix' make[3]: Entering directory '/<>/src/main' mkdir -p -- /<>/debian/r-base-core/usr/lib/R/bin/exec make[4]: Entering directory '/<>/src/main' make[4]: Leaving directory '/<>/src/main' make[4]: Entering directory '/<>/src/main' mkdir -p -- /<>/debian/r-base-core/usr/lib/R/lib make[4]: Leaving directory '/<>/src/main' make[3]: Leaving directory '/<>/src/main' make[3]: Entering directory '/<>/src/modules' make[4]: Entering directory '/<>/src/modules/internet' mkdir -p -- /<>/debian/r-base-core/usr/lib/R/modules make[4]: Leaving directory '/<>/src/modules/internet' make[4]: Entering directory '/<>/src/modules/lapack' make[4]: Leaving directory '/<>/src/modules/lapack' make[4]: Entering directory '/<>/src/modules/X11' make[4]: Leaving directory '/<>/src/modules/X11' make[3]: Leaving directory '/<>/src/modules' make[3]: Entering directory '/<>/src/library' mkdir -p -- /<>/debian/r-base-core/usr/lib/R/library installing packages ... building HTML index ... make[3]: Leaving directory '/<>/src/library' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>/tests' make[2]: Nothing to be done for 'install'. make[2]: Leaving directory '/<>/tests' make[1]: Leaving directory '/<>' (cd src/unix; \ rm -vf Rscript /<>/debian/r-base-core/usr/bin/Rscript; \ /usr/bin/make CFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT" \ CXXFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT" \ FFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -D_REENTRANT" \ CC=gcc \ CXX=g++ \ F77=gfortran \ RHOME=/usr/lib/R \ DESTDIR=/<>/debian/r-base-core \ install-Rscript ) removed 'Rscript' removed '/<>/debian/r-base-core/usr/bin/Rscript' make[1]: Entering directory '/<>/src/unix' gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -D_REENTRANT -Wl,-Bsymbolic-functions -Wl,-z,relro -DR_HOME='"/usr/lib/R"' \ -o Rscript ./Rscript.c make[1]: Leaving directory '/<>/src/unix' #ls -ltr /<>/debian/r-base-core/usr/bin/ #strings src/unix/Rscript cp -vax src/unix/Rscript /<>/debian/r-base-core/usr/bin/ 'src/unix/Rscript' -> '/<>/debian/r-base-core/usr/bin/Rscript' #ls -ltr /<>/debian/r-base-core/usr/bin/ #strings /<>/debian/r-base-core/usr/bin/Rscript (cd src/nmath/standalone; \ /usr/bin/make DESTDIR=/<>/debian/r-base-core install ) make[1]: Entering directory '/<>/src/nmath/standalone' make[2]: Entering directory '/<>/src/include' make[2]: 'Rmath.h' is up to date. make[2]: Leaving directory '/<>/src/include' /<>/debian/r-base-core/usr/share/R/include/Rmath.h is unchanged make[1]: Leaving directory '/<>/src/nmath/standalone' chmod a+x /<>/debian/r-base-core/usr/share/R/share/sh/echo.sh rm -v /<>/debian/r-base-core/usr/lib/R/COPYING removed '/<>/debian/r-base-core/usr/lib/R/COPYING' (cd /<>/debian/r-base-core/usr/lib/R/; \ ln -s ../../share/common-licenses/GPL-2 COPYING) rm -v /<>/debian/r-base-core/usr/share/R/doc/COPYING removed '/<>/debian/r-base-core/usr/share/R/doc/COPYING' (cd /<>/debian/r-base-core/usr/share/R/doc; \ ln -s ../../../share/common-licenses/GPL-2 COPYING) (cd /<>/debian/r-base-core/usr/share/texmf/tex/latex && \ ln -s ../../../R/share/texmf R) dh_movefiles --sourcedir=debian/r-base-core -pr-doc-html dh_movefiles --sourcedir=debian/r-base-core -pr-base-html make prefix=/<>/debian/r-base-core/usr \ rdocdir=/<>/debian/r-base-core/usr/share/R/doc \ install-pdf make[1]: Entering directory '/<>' make[2]: Entering directory '/<>/doc/manual' creating doc/manual/version.tex collecting LaTeX docs for package 'base' ... Converting parsed Rd's to LaTeX ........................................... collecting LaTeX docs for package 'tools' ... Converting parsed Rd's to LaTeX ...... collecting LaTeX docs for package 'utils' ... Converting parsed Rd's to LaTeX ............... collecting LaTeX docs for package 'grDevices' ... Converting parsed Rd's to LaTeX ....... collecting LaTeX docs for package 'graphics' ... Converting parsed Rd's to LaTeX ....... collecting LaTeX docs for package 'stats' ... Converting parsed Rd's to LaTeX ............................... collecting LaTeX docs for package 'datasets' ... Converting parsed Rd's to LaTeX ........ collecting LaTeX docs for package 'methods' ... Converting parsed Rd's to LaTeX ........ collecting LaTeX docs for package 'grid' ... Converting parsed Rd's to LaTeX ......... collecting LaTeX docs for package 'splines' ... Converting parsed Rd's to LaTeX . collecting LaTeX docs for package 'stats4' ... Converting parsed Rd's to LaTeX . collecting LaTeX docs for package 'tcltk' ... Converting parsed Rd's to LaTeX . collecting LaTeX docs for package 'compiler' ... Converting parsed Rd's to LaTeX collecting LaTeX docs for package 'parallel' ... Converting parsed Rd's to LaTeX . PDF/LaTeX documentation: full reference index ... This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./fullrefman.tex LaTeX2e <2021-06-01> patch level 1 L3 programming layer <2021-08-27> (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2021/02/12 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (../../share/texmf/tex/latex/Rd.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/zi4.sty `inconsolata-zi4' v1.12, 2019/05/17 Text macros for Inconsolata (msharpe) (/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/keyval.tex))))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref-langpatches.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 377. Package hyperref Warning: Option `pagebackref' has already been used, (hyperref) setting the option has no effect on input line 377. ) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg))) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty) Writing index file fullrefman.idx (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) No file fullrefman.aux. (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [1] [2] (./base-pkg.tex Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd) [1] [2] Underfull \hbox (badness 6995) in paragraph at lines 143--151 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1 /ptm/m/n/10 such that \T1/zi4/m/n/10 1 -x != 1\T1/ptm/m/n/10 . It Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/ptm/m/n/10 equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1/pt m/m/n/10 if \T1/zi4/m/n/10 double.base Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.rounding \T1/ptm/m/n/10 is 0; oth- er-wise, it is \T1/zi4/m/n/10 (double.base Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2\T1/ptm/m/n/10 . Nor-mally \T1/zi4/m /n/10 1.110223e-16\T1/ptm/m/n/10 . As Underfull \hbox (badness 4995) in paragraph at lines 143--151 \T1/zi4/m/n/10 double.neg.ulp.digits \T1/ptm/m/n/10 is bounded be-low by \T1/zi 4/m/n/10 -(double.digits + 3)\T1/ptm/m/n/10 , [3] [4] Underfull \hbox (badness 10000) in paragraph at lines 212--217 []\T1/ptm/m/n/10 when [][]\T1/zi4/m/n/10 capabilities[][][]("long.double") \T1/ ptm/m/n/10 is true, there are 10 such Underfull \hbox (badness 1675) in paragraph at lines 212--217 \T1/zi4/m/n/10 "longdouble." \T1/ptm/m/n/10 val-ues, spec-i-fy-ing the \T 1/zi4/m/n/10 long double \T1/ptm/m/n/10 prop-erty cor- [5] Underfull \hbox (badness 1178) in paragraph at lines 322--325 []\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/ 10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues [6] [7] [8] [9] Underfull \hbox (badness 2556) in paragraph at lines 561--567 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ', [10] [11] [12] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] (/usr/share/texlive/texmf-dist/tex/latex/base/t1cmtt.fd) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [23] [24] [25] Underfull \hbox (badness 10000) in paragraph at lines 1567--1573 [26] [27] [28] [29] [30] [31] [32] Overfull \hbox (26.27782pt too wide) in paragraph at lines 2045--2045 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [33] [34] [35] [36] [37] [38] Underfull \hbox (badness 10000) in paragraph at lines 2492--2494 []\T1/ptm/m/n/10 The val-ues of the splits can also be ob-tained (less ef-fi-ci ently) by Underfull \hbox (badness 10000) in paragraph at lines 2495--2500 [][][]\T1/zi4/m/n/10 apply[][][] \T1/ptm/m/n/10 al-ways sim-pli-fies com-mon le ngth re-sults, so at-tempt-ing to split via Underfull \hbox (badness 1102) in paragraph at lines 2495--2500 \T1/zi4/m/n/10 apply(x,MARGIN,identity) \T1/ptm/m/n/10 does not work (as it sim -ply gives \T1/zi4/m/n/10 x\T1/ptm/m/n/10 ). By chain-ing \T1/zi4/m/n/10 asplit [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] Underfull \hbox (badness 10000) in paragraph at lines 3890--3892 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [61] [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] Underfull \hbox (badness 2521) in paragraph at lines 5180--5182 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] [94] [95] [96] [97] [98] [99] Overfull \hbox (5.27168pt too wide) in paragraph at lines 6371--6371 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [100] [101] [102] [103] [104] [105] Overfull \hbox (46.35893pt too wide) in paragraph at lines 6837--6840 []\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa ult","internal","wininet","libcurl")\T1/ptm/m/n/10 : [106] [107] [108] Underfull \hbox (badness 10000) in paragraph at lines 7020--7023 []\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo st gen-eral form (from RFC1738) is [109] [110] Underfull \hbox (badness 6063) in paragraph at lines 7202--7208 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \ T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re- Underfull \hbox (badness 2343) in paragraph at lines 7202--7208 \T1/ptm/m/n/10 move a Byte Or-der Mark if present (which it of-ten is for files and web-pages gen-er- Underfull \hbox (badness 1708) in paragraph at lines 7202--7208 \T1/ptm/m/n/10 ated by Mi-crosoft ap-pli-ca-tions). If a BOM is re-quired (it i s not rec-om-mended) when Underfull \hbox (badness 1831) in paragraph at lines 7202--7208 \T1/ptm/m/n/10 writ-ing it should be writ-ten ex-plic-itly, e.g. by \T1/zi4/m/n /10 writeChar("\ufeff",con,eos = NULL) \T1/ptm/m/n/10 or [111] Underfull \hbox (badness 1303) in paragraph at lines 7264--7271 []\T1/zi4/m/n/10 file \T1/ptm/m/n/10 can be used with \T1/zi4/m/n/10 descriptio n = "clipboard" \T1/ptm/m/n/10 in mode \T1/zi4/m/n/10 "r" \T1/ptm/m/n/10 only. This reads the Underfull \hbox (badness 2111) in paragraph at lines 7275--7280 []\T1/ptm/m/n/10 Unix users wish-ing to \T1/ptm/m/it/10 write \T1/ptm/m/n/10 to one of the X11 se-lec-tions may be able to do so via [112] [113] Underfull \vbox (badness 3803) has occurred while \output is active [114] Underfull \vbox (badness 10000) has occurred while \output is active [115] [116] Underfull \hbox (badness 1077) in paragraph at lines 7593--7599 []\T1/ptm/m/n/10 A length-one log-i-cal vec-tor that is not \T1/zi4/m/n/10 NA\T 1/ptm/m/n/10 . Con-di-tions of length greater Underfull \hbox (badness 1231) in paragraph at lines 7593--7599 \T1/ptm/m/n/10 than one are cur-rently ac-cepted with a warn-ing, but only the first el-e- [117] [118] [119] [120] [121] [122] Underfull \hbox (badness 2096) in paragraph at lines 7948--7952 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [123] [124] Underfull \hbox (badness 2351) in paragraph at lines 8062--8065 [][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T 1/ptm/m/n/10 , [125] [126] [127] [128] [129] Underfull \hbox (badness 4479) in paragraph at lines 8388--8399 [][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[] [][] \T1/ptm/m/n/10 (for the col-umn names), [130] [131] [132] [133] [134] [135] [136] Underfull \hbox (badness 1629) in paragraph at lines 8839--8851 []\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a re ig-nored, and real times Underfull \hbox (badness 1609) in paragraph at lines 8839--8851 \T1/ptm/m/n/10 there is a prob-lem in the POSIX/C99 stan-dard with \T1/zi4/m/n/ 10 "1969-12-31 23:59:59 UTC"\T1/ptm/m/n/10 , which Underfull \hbox (badness 2426) in paragraph at lines 8839--8851 \T1/ptm/m/n/10 is \T1/zi4/m/n/10 -1 \T1/ptm/m/n/10 in cal-en-dar time and that value is on those OSes also used as an er-ror code. [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] Underfull \hbox (badness 1178) in paragraph at lines 9596--9600 []\T1/ptm/m/n/10 If true, [][]\T1/zi4/m/n/10 list[][][]\T1/ptm/m/n/10 s and ato mic vec-tors with non-[][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 names (see [][ ]\T1/zi4/m/n/10 names[][][]\T1/ptm/m/n/10 ) are de- [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] Underfull \hbox (badness 6396) in paragraph at lines 11228--11236 []\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len t method def-i-ni-tions for Underfull \hbox (badness 1946) in paragraph at lines 11228--11236 \T1/zi4/m/n/10 duplicated \T1/ptm/m/n/10 and \T1/zi4/m/n/10 anyDuplicated\T1/pt m/m/n/10 , \T1/zi4/m/n/10 anyDuplicated(x,...) \T1/ptm/m/n/10 is a ``gen-er-al- ized'' short-cut for [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188] Underfull \hbox (badness 4569) in paragraph at lines 12377--12381 []\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been passed as an ar-gu-ment Underfull \hbox (badness 2401) in paragraph at lines 12377--12381 \T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller' s en-vi-ron-ment, i.e., one needs [189] [190] [191] [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] Underfull \hbox (badness 2253) in paragraph at lines 14062--14064 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [215] Underfull \hbox (badness 1565) in paragraph at lines 14138--14142 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/ 10 , and [216] Underfull \hbox (badness 4927) in paragraph at lines 14182--14184 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m /n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with \T1/zi4 /m/n/10 fsep = [217] [218] Underfull \hbox (badness 3148) in paragraph at lines 14284--14289 [][][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 help[][][]\T1/ptm/m/n/10 ; [][]\T1/zi4 /m/n/10 RShowDoc[][][] \T1/ptm/m/n/10 call \T1/zi4/m/n/10 file.show() \T1/ptm/m /n/10 for \T1/zi4/m/n/10 type = "text"\T1/ptm/m/n/10 . Con-sider Underfull \hbox (badness 1466) in paragraph at lines 14331--14334 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/ zi4/m/n/10 file.copy \T1/ptm/m/n/10 and [219] [220] Underfull \hbox (badness 10000) in paragraph at lines 14458--14462 [][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [ ][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 14469--14472 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [221] [222] [223] [224] [225] Underfull \hbox (badness 3965) in paragraph at lines 14766--14770 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [226] [227] [228] [229] [230] [231] [232] [233] [234] [235] [236] [237] Underfull \hbox (badness 4429) in paragraph at lines 15546--15549 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] \T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for [238] [239] Underfull \hbox (badness 10000) in paragraph at lines 15652--15654 []\T1/ptm/m/n/10 This works via \T1/zi4/m/n/10 prettyNum()\T1/ptm/m/n/10 , whic h calls Underfull \hbox (badness 1215) in paragraph at lines 15652--15654 \T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero) \T1/ptm/m/n/10 three times in this case, see Underfull \hbox (badness 10000) in paragraph at lines 15674--15679 []\T1/ptm/m/n/10 For num-bers, \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 calls \T 1/zi4/m/n/10 prettyNum() \T1/ptm/m/n/10 when needed which it-self calls Underfull \hbox (badness 1558) in paragraph at lines 15674--15679 \T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero)\T1/ptm/m/n/10 . (\T1/ptm/m /it/10 ``when needed''\T1/ptm/m/n/10 : when \T1/zi4/m/n/10 zero.print \T1/ptm/m /n/10 is not Underfull \hbox (badness 10000) in paragraph at lines 15686--15690 []\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b ers on the dec-i-mal point, so Underfull \hbox (badness 2426) in paragraph at lines 15686--15690 \T1/zi4/m/n/10 formatC(c(6.11,13.1),digits = 2,format = "fg") \T1/ptm/m/n/10 gi ves \T1/zi4/m/n/10 c("6.1"," 13")\T1/ptm/m/n/10 . If you want [240] Underfull \hbox (badness 2035) in paragraph at lines 15725--15729 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt m/m/n/10 3.2.0: for use within [241] Underfull \vbox (badness 10000) has occurred while \output is active [242] [243] [244] [245] [246] [247] [248] [249] [250] Underfull \hbox (badness 2452) in paragraph at lines 16338--16342 []\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 16338--16342 \T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_ WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and [251] [252] Underfull \hbox (badness 1092) in paragraph at lines 16511--16516 [][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t he DLL has been loaded us-ing [253] [254] [255] [256] Underfull \hbox (badness 6741) in paragraph at lines 16764--16768 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \ T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10 , [257] [258] [259] [260] [261] [262] [263] [264] [265] [266] Underfull \vbox (badness 10000) has occurred while \output is active [267] [268] [269] [270] [271] [272] [273] [274] [275] [276] [277] Underfull \hbox (badness 1478) in paragraph at lines 18113--18116 []\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [278] [279] [280] [281] Underfull \hbox (badness 10000) in paragraph at lines 18381--18383 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww w . unicode . org / reports / tr35 / [282] [283] [284] [285] [286] [287] [288] [289] [290] Underfull \hbox (badness 1442) in paragraph at lines 18980--18982 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see [291] [292] [293] [294] [295] Underfull \hbox (badness 10000) in paragraph at lines 19311--19317 [296] [297] [298] [299] Underfull \hbox (badness 1248) in paragraph at lines 19556--19559 []\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n /10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/ m/n/10 , [300] [301] [302] [303] Underfull \hbox (badness 4739) in paragraph at lines 19819--19821 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [304] [305] [306] [307] Underfull \hbox (badness 1603) in paragraph at lines 20046--20049 []\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/zi4/m/n/10 https : / / w ww . netlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / www . [308] [309] [310] Underfull \hbox (badness 1596) in paragraph at lines 20273--20278 \T1/ptm/m/n/10 trix or, if \T1/zi4/m/n/10 simplify = "array"\T1/ptm/m/n/10 , an ar-ray if ap-pro-pri-ate, by ap-ply-ing \T1/zi4/m/n/10 simplify2array()\T1/ptm /m/n/10 . [311] [312] [313] [314] [315] [316] [317] [318] [319] [320] Underfull \hbox (badness 2469) in paragraph at lines 20878--20883 []\T1/ptm/m/n/10 In late 2017 a \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 in-stal-l a-tion was seen di-vided into two li-braries, \T1/zi4/m/n/10 libcurl \T1/ptm/m/ n/10 and [321] Underfull \hbox (badness 10000) in paragraph at lines 20972--20976 []\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory [322] [323] [324] Underfull \hbox (badness 1014) in paragraph at lines 21142--21147 []\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1 0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if [325] [326] [327] [328] [329] [330] [331] [332] [333] [334] [335] [336] [337] Underfull \hbox (badness 1264) in paragraph at lines 21991--21996 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [338] Underfull \hbox (badness 4441) in paragraph at lines 22020--22023 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory \T1/zi4/m/n/10 "LC_ALL" \T1/ptm/ m/n/10 sets only cat-e-gories \T1/zi4/m/n/10 "LC_COLLATE"\T1/ptm/m/n/10 , \T1/z i4/m/n/10 "LC_CTYPE"\T1/ptm/m/n/10 , [339] [340] [341] [342] [343] [344] [345] [346] [347] [348] [349] Underfull \hbox (badness 6047) in paragraph at lines 22794--22796 []\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n /10 has the prop-erty that \T1/zi4/m/n/10 make.unique(c(A,B)) == [350] [351] [352] [353] [354] [355] [356] [357] [358] [359] [360] [361] [362] [363] [364] [365] [366] [367] Underfull \hbox (badness 10000) in paragraph at lines 23874--23880 [][]$\T1/zi4/m/n/10 https : / / zlib . net/$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m /n/10 https : / / en . wikipedia . org / wiki / Gzip$[][]\T1/ptm/m/n/10 , [][]$ \T1/zi4/m/n/10 http : / / www . bzip . org/$[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 23874--23880 [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm /m/n/10 , [][]$\T1/zi4/m/n/10 https : / / tukaani . org / xz/$[][] \T1/ptm/m/n/ 10 and [][]$\T1/zi4/m/n/10 https : [368] [369] [370] [371] [372] [373] [374] Underfull \hbox (badness 2790) in paragraph at lines 24375--24378 []\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s ages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 24375--24378 \T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m es-sages, so can be sup-pressed by [375] [376] [377] [378] [379] Underfull \hbox (badness 1194) in paragraph at lines 24664--24667 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 . It calls [380] [381] [382] Underfull \hbox (badness 2368) in paragraph at lines 24871--24877 []\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 , \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond- ing list, i.e., Underfull \hbox (badness 4981) in paragraph at lines 24871--24877 \T1/zi4/m/n/10 names(as.list(env,all.names = TRUE)) \T1/ptm/m/n/10 which are al so given by [][]\T1/zi4/m/n/10 ls[][][](env,all.names = [383] [384] [385] [386] [387] [388] Underfull \hbox (badness 10000) in paragraph at lines 25256--25259 []\T1/ptm/m/n/10 optional [][]\T1/zi4/m/n/10 logical[][][] \T1/ptm/m/n/10 even- tu-ally to be passed to \T1/zi4/m/n/10 print()\T1/ptm/m/n/10 , used by [389] [390] [391] [392] [393] [394] [395] [396] [397] [398] Underfull \hbox (badness 10000) in paragraph at lines 25876--25878 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m ore ef-fi-cient than \T1/zi4/m/n/10 pkg %in% [399] [400] [401] [402] [403] [404] [405] [406] [407] [408] [409] [410] Underfull \hbox (badness 1038) in paragraph at lines 26737--26745 []\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/ 10 R \T1/ptm/m/n/10 starts up. Ini-tially Underfull \hbox (badness 1735) in paragraph at lines 26737--26745 \T1/ptm/m/n/10 set from value of the en-vi-ron-ment vari-able \T1/zi4/m/n/10 R_ DEFAULT_PACKAGES\T1/ptm/m/n/10 , or if that is un- Underfull \hbox (badness 1292) in paragraph at lines 26737--26745 \T1/ptm/m/n/10 set to \T1/zi4/m/n/10 c("datasets","utils","grDevices","graphics ","stats","methods")\T1/ptm/m/n/10 . (Set Underfull \hbox (badness 1881) in paragraph at lines 26746--26749 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are [411] Underfull \hbox (badness 6220) in paragraph at lines 26770--26772 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [412] Underfull \hbox (badness 2142) in paragraph at lines 26911--26915 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able [413] Underfull \hbox (badness 1968) in paragraph at lines 26968--26973 []\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able [414] [415] [416] Underfull \hbox (badness 10000) in paragraph at lines 27262--27268 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/ n/10 setRepositories[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 27262--27268 \T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "https://bioconductor.org"\T1/ ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 27262--27268 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de"\ T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 10000) in paragraph at lines 27275--27278 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][ ][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10 and [417] Underfull \hbox (badness 2689) in paragraph at lines 27301--27303 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see Underfull \hbox (badness 10000) in paragraph at lines 27336--27341 []\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/ 10 (and in-di-rectly Underfull \hbox (badness 2529) in paragraph at lines 27342--27353 \T1/ptm/m/n/10 in-di-rectly [][]\T1/zi4/m/n/10 update.packages[][][]\T1/ptm/m/n /10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si- Underfull \hbox (badness 2512) in paragraph at lines 27342--27353 \T1/ptm/m/n/10 ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi4/m /n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use and Underfull \hbox (badness 7203) in paragraph at lines 27354--27357 []\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/ n/10 and [418] [419] Underfull \vbox (badness 3803) has occurred while \output is active [420] [421] [422] [423] [424] [425] Underfull \hbox (badness 10000) in paragraph at lines 27901--27904 []\T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 str2lang(s ) \T1/ptm/m/n/10 re-turn spe-cial ver-sions of [426] Underfull \hbox (badness 7925) in paragraph at lines 27982--27986 []\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 vec-to r \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n /10 cor-re-sponds to Underfull \hbox (badness 1622) in paragraph at lines 27982--27986 [][]\T1/zi4/m/n/10 parse[][][](text = s,keep.source=FALSE)\T1/ptm/m/n/10 , whic h is al-ways of type ([][]\T1/zi4/m/n/10 typeof[][][]\T1/ptm/m/n/10 ) and [][]\ T1/zi4/m/n/10 class[][][] [427] Underfull \hbox (badness 6125) in paragraph at lines 27987--27996 []\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 string \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2lang(s) \T1/ptm/m/n/10 cor -re-sponds to [][]\T1/zi4/m/n/10 parse[][][](text = [428] [429] [430] [431] [432] [433] [434] [435] [436] [437] [438] [439] [440] [441] [442] Underfull \hbox (badness 2726) in paragraph at lines 28935--28938 []\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di -cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put, see [443] [444] [445] [446] [447] [448] [449] [450] [451] [452] [453] [454] Underfull \hbox (badness 1603) in paragraph at lines 29685--29688 []\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/zi4/m/n/10 https : / / w ww . netlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / www . [455] [456] [457] [458] [459] [460] [461] [462] [463] [464] [465] [466] [467] [468] [469] Underfull \hbox (badness 1533) in paragraph at lines 30713--30716 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [470] [471] [472] Underfull \hbox (badness 1163) in paragraph at lines 30876--30887 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\ T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [473] [474] [475] [476] [477] [478] [479] Underfull \vbox (badness 10000) has occurred while \output is active [480] [481] [482] [483] [484] [485] [486] [487] [488] [489] [490] [491] [492] [493] [494] [495] [496] [497] [498] Underfull \hbox (badness 10000) in paragraph at lines 32539--32543 []\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n /10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 32539--32543 \T1/zi4/m/n/10 "(?[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t he matches are also re-turned by name. Underfull \hbox (badness 3557) in paragraph at lines 32560--32562 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919799 / Underfull \hbox (badness 1122) in paragraph at lines 32563--32567 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 pcre2pattern \T1/ptm/m/n/10 or \T1/zi4/m/n/ 10 pcrepattern man \T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m/n/10 ht tps : / / www . pcre . org / [499] [500] Underfull \vbox (badness 10000) has occurred while \output is active [501] [502] [503] [504] [505] [506] [507] [508] Underfull \hbox (badness 1655) in paragraph at lines 33157--33159 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm /m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] [519] [520] [521] [522] [523] [524] [525] [526] Underfull \hbox (badness 2261) in paragraph at lines 34349--34354 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i t ap-plies to all fields; oth-er-wise, if [527] Underfull \hbox (badness 10000) in paragraph at lines 34376--34382 []\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac- ters Underfull \hbox (badness 1484) in paragraph at lines 34376--34382 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 \a,\b,\f,\n,\r,\t,\v\T1/ptm/m/n/10 ' and oc-tal and hex-adec-i-mal rep-re-sen-ta-tions like [528] [529] [530] [531] [532] [533] [534] [535] [536] [537] [538] [539] [540] [541] [542] [543] [544] [545] [546] [547] [548] [549] [550] [551] [552] [553] [554] [555] [556] [557] [558] [559] [560] [561] [562] [563] [564] [565] [566] [567] Underfull \hbox (badness 10000) in paragraph at lines 36987--36989 [][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919 799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for [568] Underfull \vbox (badness 10000) has occurred while \output is active [569] [570] [571] [572] [573] [574] [575] [576] Underfull \hbox (badness 1072) in paragraph at lines 37584--37588 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 37589--37593 []\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/ 10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 - -no-init-file\T1/ptm/m/n/10 ', [577] Underfull \hbox (badness 10000) in paragraph at lines 37619--37625 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 37619--37625 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 37619--37625 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in Underfull \hbox (badness 3009) in paragraph at lines 37634--37641 []\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt m/m/n/10 ' which is read Underfull \hbox (badness 1038) in paragraph at lines 37634--37641 \T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron- ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 37634--37641 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 37634--37641 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [578] [579] [580] Underfull \hbox (badness 2644) in paragraph at lines 37866--37870 []\T1/ptm/m/n/10 alternative to \T1/zi4/m/n/10 exprs \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 ...\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an [581] [582] [583] Underfull \hbox (badness 1142) in paragraph at lines 38018--38024 []\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form at \T1/ptm/m/n/10 meth-ods is \T1/zi4/m/n/10 "%Y-%m-%d [584] [585] [586] [587] [588] [589] [590] [591] [592] [593] [594] [595] [596] [597] [598] [599] [600] [601] [602] [603] Underfull \hbox (badness 1565) in paragraph at lines 39297--39299 []\T1/ptm/m/n/10 integer code used in \T1/zi4/m/n/10 quantile(*,type=quantile.t ype) \T1/ptm/m/n/10 for the de-fault [604] [605] [606] [607] [608] [609] [610] [611] [612] [613] Underfull \hbox (badness 1137) in paragraph at lines 39887--39893 []\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild -cards in file paths. For pre-cise de-tails Underfull \hbox (badness 4967) in paragraph at lines 39906--39911 []\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi s may need to be matched ex-plic-itly: for ex-am-ple [614] [615] Underfull \hbox (badness 1616) in paragraph at lines 40026--40031 \T1/zi4/m/n/10 system("id") \T1/ptm/m/n/10 is much more portable on Unix-alikes , pro-vided only the POSIX op-tions [616] [617] [618] [619] [620] [621] [622] [623] [624] Underfull \hbox (badness 1472) in paragraph at lines 40568--40571 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee p their source in-clud-ing com-ments, see [625] [626] [627] [628] [629] [630] [631] [632] [633] [634] [635] [636] [637] Underfull \vbox (badness 3803) has occurred while \output is active [638] Underfull \hbox (badness 10000) in paragraph at lines 41487--41491 []\T1/ptm/m/n/10 On 64-bit plat-forms \T1/zi4/m/n/10 bin \T1/ptm/m/n/10 can hav e $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., \T1/zi4/m/n/10 length(bin) > [639] [640] [641] [642] Underfull \hbox (badness 10000) in paragraph at lines 41738--41741 [][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [ ][]$https : / / developer . r-[]project . org / [643] [644] [645] Underfull \hbox (badness 10000) in paragraph at lines 41922--41926 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[ ][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer . [646] [647] [648] [649] [650] [651] [652] [653] [654] Underfull \hbox (badness 10000) in paragraph at lines 42547--42550 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / data . iana . org / time-[ ]zones / [655] [656] [657] [658] [659] [660] Underfull \vbox (badness 10000) has occurred while \output is active [661] [662] [663] [664] [665] [666] [667] [668] Underfull \hbox (badness 1990) in paragraph at lines 43469--43477 []\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e r-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 43469--43477 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less [669] [670] [671] [672] [673] [674] [675] [676] Underfull \hbox (badness 1917) in paragraph at lines 43975--43982 []\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/ ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute [677] [678] [679] [680] [681] [682] [683] Underfull \hbox (badness 2452) in paragraph at lines 44428--44434 [][][]\T1/zi4/m/n/10 file[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.access[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.append[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 file.copy[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.create[] [][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.exists[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [684] [685] [686] [687] [688] [689] Underfull \hbox (badness 3668) in paragraph at lines 44802--44804 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di- ately, even if [690] [691] Underfull \hbox (badness 2401) in paragraph at lines 44932--44936 []\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [692] [693] [694] Underfull \hbox (badness 2111) in paragraph at lines 45139--45144 \T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n ot empty, these are used as col-umn names. Underfull \hbox (badness 10000) in paragraph at lines 45160--45165 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m /n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is [695] [696] [697] [698] Underfull \hbox (badness 4001) in paragraph at lines 45385--45387 []\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/n/10 https : / / developer . [699] [700] [701] [702] [703] Underfull \hbox (badness 5417) in paragraph at lines 45750--45754 []\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [704] Underfull \hbox (badness 10000) in paragraph at lines 45811--45815 []\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard ' reg-exps, in-clud-ing el-e-ments named [705] [706]) (./compiler-pkg.tex Chapter 2. [707] [708] [709] [710]) (./datasets-pkg.tex Chapter 3. [711] [712] [713] [714] [715] [716] [717] [718] [719] [720] [721] [722] [723] [724] [725] [726] [727] Underfull \hbox (badness 1097) in paragraph at lines 1037--1041 []\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th e iden-ti-fi-ca-tion of crim-i-nals. [728] [729] [730] [731] [732] [733] [734] [735] [736] [737] [738] [739] [740] [741] [742] [743] [744] [745] [746] [747] [748] [749] [750] [751] [752] [753] [754] [755] [756] [757] [758] [759] [760] [761] [762] [763] [764] [765] [766] [767] [768] [769] [770] [771] [772] [773] [774] [775] [776] [777] [778] [779] [780] [781] [782] [783] [784] [785] [786] [787] [788] [789] [790] [791] [792] [793]) (./grDevices-pkg.tex [794] Chapter 4. [795] [796] [797] [798] [799] Underfull \hbox (badness 3158) in paragraph at lines 282--286 []\T1/ptm/m/n/10 numeric vec-tor of length 3, \T1/zi4/m/n/10 c(mi,ma,n.)\T1/ptm /m/n/10 , with iden-ti-cal mean-ing to Underfull \hbox (badness 10000) in paragraph at lines 298--303 []\T1/ptm/m/n/10 Apart from that, [][]\T1/zi4/m/n/10 axisTicks[][][]() \T1/ptm/ m/n/10 just calls the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/ptm/m/n/1 0 in Underfull \hbox (badness 1852) in paragraph at lines 298--303 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 /src/main/plot.c\T1/ptm/m/n/10 ' which is also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack-age func-t ion [800] [801] [802] [803] [804] [805] [806] [807] [808] [809] Underfull \hbox (badness 1424) in paragraph at lines 898--900 [][][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) and \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 mean trans-par-ent, which can also be spec-i -fied as [810] [811] [812] [813] Underfull \hbox (badness 5175) in paragraph at lines 1192--1194 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [814] [815] Underfull \hbox (badness 2512) in paragraph at lines 1311--1313 []\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/n/10 https : / / web . arc hive . org / web / 20190613001950 / http : / / efg2 . com / [816] [817] Underfull \hbox (badness 1852) in paragraph at lines 1405--1408 []\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col- ors that will be used in plot-ting, call-ing [818] [819] [820] Underfull \hbox (badness 1490) in paragraph at lines 1611--1616 \T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\ T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/ 10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and [821] [822] [823] [824] [825] [826] Underfull \hbox (badness 1325) in paragraph at lines 2017--2027 \T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/ 10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1 /ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 , [827] [828] Underfull \hbox (badness 10000) in paragraph at lines 2129--2131 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [829] [830] [831] Underfull \hbox (badness 6758) in paragraph at lines 2308--2311 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [832] [833] [834] [835] [836] [837] [838] [839] [840] [841] Underfull \hbox (badness 10000) in paragraph at lines 2919--2920 [842] [843] [844] [845] [846] [847] [848] [849] [850] Underfull \hbox (badness 10000) in paragraph at lines 3493--3498 []\T1/zi4/m/n/10 nclass.FD \T1/ptm/m/n/10 uses the Freedman-Diaconis choice bas ed on the inter-quartile range [851] [852] [853] Underfull \vbox (badness 3803) has occurred while \output is active [854] [855] [856] [857] Underfull \vbox (badness 3803) has occurred while \output is active [858] Underfull \hbox (badness 10000) in paragraph at lines 3992--3995 []\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv e a C in-te-ger for-mat such as [859] [860] [861] [862] [863] [864] [865] [866] [867] [868] [869] Underfull \hbox (badness 10000) in paragraph at lines 4732--4737 [][][]$\T1/zi4/m/n/10 https : / / www . adobe . com / content / dam / acom / en / devnet / actionscript / articles / PLRM . pdf$[][] Underfull \hbox (badness 10000) in paragraph at lines 4732--4737 \T1/ptm/m/n/10 or PDF [][]$\T1/zi4/m/n/10 https : / / www . adobe . com / conte nt / dam / acom / en / devnet / acrobat / pdfs / pdf _ Underfull \hbox (badness 1881) in paragraph at lines 4732--4737 \T1/zi4/m/n/10 reference _ 1-[]7 . pdf$[][] \T1/ptm/m/n/10 and in dec-i-mal, oc -tal and hex at [][]$\T1/zi4/m/n/10 https : / / www . stat . auckland . ac . [870] [871] [872] Underfull \hbox (badness 1584) in paragraph at lines 4888--4890 []\T1/ptm/m/n/10 For type \T1/zi4/m/n/10 "cairo"\T1/ptm/m/n/10 , the \T1/zi4/m/ n/10 symbolfamily \T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See Underfull \hbox (badness 1067) in paragraph at lines 4892--4899 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [873] [874] [875] [876] Underfull \hbox (badness 1377) in paragraph at lines 5198--5203 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [877] Underfull \hbox (badness 1418) in paragraph at lines 5274--5281 \T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4 /m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/ zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm /m/n/10 , [878] Underfull \hbox (badness 1755) in paragraph at lines 5292--5294 []\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East Asian lan-guages -- see [879] Underfull \hbox (badness 1377) in paragraph at lines 5403--5408 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \ T1/zi4/m/n/10 "rgb" \T1/ptm/m/n/10 (which is RGB+gray) and [880] Underfull \hbox (badness 7344) in paragraph at lines 5472--5474 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [881] Underfull \vbox (badness 3803) has occurred while \output is active [882] Underfull \hbox (badness 2035) in paragraph at lines 5610--5619 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5610--5619 \T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/ n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 5610--5619 \T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 , [883] [884] Underfull \hbox (badness 10000) in paragraph at lines 5678--5680 []\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4 /m/n/10 https : / / ftp . gnu . org / pub / non-[]gnu / [885] [886] Underfull \hbox (badness 1546) in paragraph at lines 5820--5828 []\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T 1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/ n/10 , [887] [888] [889] [890] [891] [892] [893] [894] Underfull \hbox (badness 10000) in paragraph at lines 6358--6361 []\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red /green/blue) into HSV space [895] [896] Underfull \vbox (badness 3803) has occurred while \output is active [897] [898] [899] [900] [901] [902] [903] [904] [905] [906] [907] [908] Underfull \hbox (badness 1189) in paragraph at lines 7184--7186 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [909] Underfull \hbox (badness 10000) in paragraph at lines 7289--7291 []\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK lan-guages and [910] [911] [912] [913] [914] Underfull \hbox (badness 3780) in paragraph at lines 7603--7609 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1 0 "AvantGarde"\T1/ptm/m/n/10 , [915] [916] [917] Underfull \hbox (badness 2680) in paragraph at lines 7805--7807 []\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of [918] [919] [920]) (./graphics-pkg.tex Chapter 5. [921] [922] [923] [924] [925] [926] [927] [928] [929] [930] [931] [932] [933] [934] [935] [936] Overfull \hbox (12.71341pt too wide) in paragraph at lines 981--981 [] \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = " # {passengers}", legend.text = TRUE)[] [937] [938] [939] [940] [941] [942] Underfull \hbox (badness 4634) in paragraph at lines 1355--1358 [][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n /10 , [943] [944] [945] [946] [947] [948] [949] [950] [951] [952] [953] [954] [955] [956] [957] [958] [959] Underfull \hbox (badness 1728) in paragraph at lines 2333--2335 []\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use \T1/zi4/m/n/10 "n " \T1/ptm/m/n/10 to sup-press and see also [960] Underfull \hbox (badness 1009) in paragraph at lines 2426--2433 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [961] [962] [963] [964] [965] [966] [967] [968] [969] [970] [971] [972] [973] [974] [975] [976] [977] [978] [979] [980] [981] [982] Underfull \vbox (badness 10000) has occurred while \output is active [983] Underfull \vbox (badness 10000) has occurred while \output is active [984] [985] [986] [987] [988] [989] [990] [991] [992] [993] [994] [995] Underfull \hbox (badness 3229) in paragraph at lines 4602--4607 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used, see [996] [997] [998] [999] [1000] Underfull \hbox (badness 10000) in paragraph at lines 5032--5038 []\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n /10 (width,height) \T1/ptm/m/n/10 in user co-or-di-nate units. Underfull \hbox (badness 5908) in paragraph at lines 5032--5038 \T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin" ) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that [1001] [1002] Underfull \hbox (badness 10000) in paragraph at lines 5163--5166 [1003 >/library/graphics/help/figures//mai.pdf >] Underfull \hbox (badness 10000) in paragraph at lines 5224--5226 Underfull \vbox (badness 10000) has occurred while \output is active [1004] [1005 >/library/graphics/help/figures//oma.pdf >] [1006] Underfull \hbox (badness 10000) in paragraph at lines 5414--5416 []\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2 :6\T1/ptm/m/n/10 ) cor-re-spond to [1007] Underfull \vbox (badness 3803) has occurred while \output is active [1008] [1009] [1010] [1011] [1012] [1013] [1014]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.plot}) has been already used, duplicate ignored \relax l.5896 \aliasA{plot}{plot.default}{plot} [1015] [1016] [1017] [1018] [1019] [1020] [1021] [1022] [1023] [1024] [1025] [1026] [1027] [1028] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6801--6802 [][] [1029 >/library/graphics/help/figures//pch.pdf >] [1030] Underfull \vbox (badness 3803) has occurred while \output is active [1031] [1032] [1033] [1034] [1035] [1036] [1037] [1038] [1039] [1040] [1041] [1042] Underfull \hbox (badness 2012) in paragraph at lines 7623--7626 []\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d rawn be-tween the point \T1/zi4/m/n/10 (x0[i],y0[i]) \T1/ptm/m/n/10 and the poi nt [1043] [1044] [1045] [1046] [1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] [1055] [1056] [1057] [1058] [1059] [1060] [1061] [1062] [1063] Underfull \hbox (badness 10000) in paragraph at lines 8889--8891 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color Underfull \hbox (badness 10000) in paragraph at lines 8891--8893 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color [1064]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.uni ts}) has been already used, duplicate ignored \relax l.8971 \HeaderA{units}{Graphical Units}{units} [1065] [1066] [1067] [1068]) (./grid-pkg.tex Chapter 6. [1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] Underfull \hbox (badness 2680) in paragraph at lines 486--489 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1 /zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio n of [1077] [1078] [1079] [1080] [1081] [1082] [1083] [1084] [1085] [1086] [1087] Underfull \hbox (badness 4279) in paragraph at lines 1112--1121 [][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m /n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 unit[][][]\T1/ptm/m/n/10 , [1088] [1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100] [1101] [1102] [1103] [1104] [1105] [1106] [1107] [1108] [1109] [1110] [1111] [1112] [1113] [1114] [1115] [1116] [1117] [1118] [1119] [1120] [1121] [1122] [1123] [1124] [1125] [1126] [1127] [1128] [1129] [1130] [1131] [1132] [1133] [1134] [1135] [1136] [1137] [1138] [1139] [1140] [1141] [1142] [1143] [1144] [1145] [1146] Underfull \hbox (badness 1067) in paragraph at lines 4537--4540 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1147] [1148] [1149] [1150] Underfull \hbox (badness 7256) in paragraph at lines 4782--4784 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1151] [1152] [1153] [1154] [1155] [1156] [1157] [1158] [1159] [1160] [1161] [1162] [1163] [1164] [1165] [1166] [1167] [1168] [1169] [1170] [1171] [1172] [1173] [1174] [1175] [1176] [1177] [1178] [1179] [1180] [1181] [1182] [1183] [1184] Underfull \hbox (badness 1824) in paragraph at lines 6753--6756 []\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by do-ing some-thing like \T1/zi4/m/n/10 depth [1185] [1186] [1187] [1188]) (./methods-pkg.tex Chapter 7. [1189] [1190] [1191] [1192] [1193] [1194] [1195] [1196] Underfull \vbox (badness 10000) has occurred while \output is active [1197] Underfull \vbox (badness 10000) has occurred while \output is active [1198] [1199] [1200] [1201] [1202] [1203] [1204] [1205] [1206] [1207] Underfull \hbox (badness 2237) in paragraph at lines 1385--1387 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \ T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package "\T1/ptm/m/n/10 , also of class [1208] [1209] [1210] [1211] [1212] [1213] [1214] [1215] Underfull \hbox (badness 2181) in paragraph at lines 1932--1939 []\T1/ptm/m/n/10 Two vir-tual classes are sup-plied to test for ref-er-ence ob- jects: \T1/zi4/m/n/10 is(x,"refClass") \T1/ptm/m/n/10 tests [1216] Underfull \hbox (badness 10000) in paragraph at lines 1981--1986 []\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c an be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1981--1986 \T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1 0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the [1217] [1218] [1219] Underfull \hbox (badness 2213) in paragraph at lines 2214--2219 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use \T1/zi4/m/n/10 where = [1220] [1221] [1222] [1223] [1224] Underfull \hbox (badness 10000) in paragraph at lines 2574--2577 []\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o b-jects of class [1225] [1226] Underfull \hbox (badness 1132) in paragraph at lines 2714--2718 []\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1 0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re -turned re-sult is in [1227] Underfull \hbox (badness 1033) in paragraph at lines 2746--2751 \T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store s the [1228] [1229] [1230] [1231] [1232] [1233] [1234] Underfull \hbox (badness 1102) in paragraph at lines 3303--3305 []\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na me of the pack-age (with-out the ex-tra-ne-ous [1235] [1236] [1237] [1238] [1239] Underfull \hbox (badness 10000) in paragraph at lines 3634--3639 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these classes takes spe-cial ar-gu-ments [1240] Underfull \hbox (badness 10000) in paragraph at lines 3642--3651 []\T1/ptm/m/n/10 The [1241] Underfull \hbox (badness 10000) in paragraph at lines 3762--3763 [] \T1/zi4/m/n/10 Pos <-setClass("Pos",slots = c(latitude = "numeric",longitude = "numeric",altitude [1242] [1243] [1244] [1245] [1246] [1247] [1248] [1249] [1250] [1251] [1252] Underfull \hbox (badness 1769) in paragraph at lines 4472--4478 []\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4472--4478 \T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T 1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by [1253] [1254] [1255] [1256] [1257] [1258] [1259] [1260] [1261] [1262] Underfull \vbox (badness 10000) has occurred while \output is active [1263] [1264] [1265] Underfull \hbox (badness 4036) in paragraph at lines 5437--5440 []\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10 the method to use in re-sponse to a [1266] Underfull \hbox (badness 3803) in paragraph at lines 5512--5514 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1267] [1268] [1269] [1270] Underfull \hbox (badness 1087) in paragraph at lines 5744--5749 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] Underfull \hbox (badness 1675) in paragraph at lines 6451--6457 \T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1279] [1280] [1281] [1282] Underfull \vbox (badness 10000) has occurred while \output is active [1283] [1284] [1285] [1286]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has been already used, duplicate ignored \relax l.6973 \aliasA{S4}{S3Part}{S4} [1287] [1288] [1289]pdfTeX warning (ext4): desti nation with the same identifier (name{Rfn.Complex}) has been already used, dupl icate ignored \relax l.7229 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate ignored \relax l.7231 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) has been already used, duplicate igno red \relax l.7232 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination wi th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7234 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor ed \relax l.7235 \aliasA{Summary}{S4groupGeneric}{Summary} [1290] Underfull \hbox (badness 2050) in paragraph at lines 7296--7300 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1291] [1292] [1293] Underfull \hbox (badness 1286) in paragraph at lines 7484--7486 []\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal ly [1294] [1295] [1296] [1297] [1298] [1299] [1300] [1301] [1302] [1303] [1304] [1305] [1306] [1307] [1308] [1309] [1310] [1311] [1312] [1313] [1314] [1315] [1316] [1317] [1318] [1319] [1320] Underfull \vbox (badness 10000) has occurred while \output is active [1321] [1322] [1323] [1324] [1325] [1326] [1327] [1328] Underfull \hbox (badness 1137) in paragraph at lines 10011--10019 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/n/10 ne w("signature",functionDef,...)\T1/ptm/m/n/10 . The [1329] [1330] [1331] [1332] [1333] [1334] [1335] Underfull \hbox (badness 1852) in paragraph at lines 10564--10568 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1336] [1337] [1338] [1339]) (./parallel-pkg.tex [1340] Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4 /m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[ ][][]: see [1341] [1342] [1343] [1344] [1345] Underfull \hbox (badness 1320) in paragraph at lines 300--303 []\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, So-laris and Win-dows. [1346] [1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355] [1356] [1357] [1358] [1359] [1360] [1361] [1362] Underfull \hbox (badness 3386) in paragraph at lines 1401--1404 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R andom.seed \T1/ptm/m/n/10 when the [1363] [1364] [1365]) (./splines-pkg.tex [1366] Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] [1377] [1378] [1379] [1380] [1381] [1382]) (./stats-pkg.tex Chapter 10. [1383] [1384] [1385] [1386] [1387] [1388] [1389] [1390] [1391] [1392] [1393] [1394] [1395] [1396] Underfull \hbox (badness 1412) in paragraph at lines 882--884 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm \T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for [1397] [1398] [1399] [1400] [1401] [1402] [1403] [1404] Underfull \hbox (badness 2503) in paragraph at lines 1364--1367 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1405] [1406] [1407] Underfull \hbox (badness 10000) in paragraph at lines 1544--1548 []\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov","lm") \T1/ptm/m/n/1 0 or for mul-ti-ple re-sponses of class [1408] [1409] [1410] [1411] [1412] [1413] [1414] [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] [1423] [1424] [1425] [1426] [1427] [1428] [1429] [1430] [1431] [1432] [1433] [1434] [1435] [1436] [1437] [1438] Underfull \hbox (badness 2503) in paragraph at lines 3514--3517 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1439] [1440] [1441] [1442] [1443] [1444] [1445] [1446] [1447] [1448] [1449] [1450] [1451] [1452] [1453] Underfull \hbox (badness 1127) in paragraph at lines 4430--4433 []\T1/ptm/m/n/10 standardized resid-u-als, \T1/zi4/m/n/10 (observed -expected) / sqrt(V)\T1/ptm/m/n/10 , where \T1/zi4/m/n/10 V \T1/ptm/m/n/10 is the [1454] [1455] [1456] [1457] [1458] Underfull \hbox (badness 3989) in paragraph at lines 4770--4777 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468] Underfull \hbox (badness 2556) in paragraph at lines 5406--5409 []\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/ ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p tm/m/n/10 . For Underfull \hbox (badness 2932) in paragraph at lines 5423--5425 []\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se- quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is given by [1469] [1470] [1471] [1472] [1473] [1474] [1475] Underfull \hbox (badness 2503) in paragraph at lines 5820--5824 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1476] [1477] [1478] [1479] [1480] [1481] [1482] [1483] [1484] [1485] [1486] [1487] [1488] Underfull \hbox (badness 7081) in paragraph at lines 6614--6617 []\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 10000) in paragraph at lines 6618--6620 []\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also [1489] [1490] [1491] [1492] [1493] Underfull \vbox (badness 3803) has occurred while \output is active [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] Underfull \hbox (badness 10000) in paragraph at lines 7465--7468 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T 1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the [1502] [1503] [1504] [1505] [1506] [1507] [1508] [1509] [1510] [1511] [1512] [1513] [1514] [1515] [1516] [1517] [1518] [1519] [1520] [1521] [1522] [1523] Underfull \vbox (badness 10000) has occurred while \output is active [1524] [1525] [1526] [1527] [1528] Underfull \hbox (badness 2626) in paragraph at lines 9144--9147 []\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1529] [1530] Underfull \hbox (badness 2503) in paragraph at lines 9251--9255 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1531] [1532] [1533] [1534] [1535] [1536] [1537] [1538] [1539] [1540] [1541] [1542] [1543] [1544] [1545] [1546] [1547] [1548] [1549] [1550] Underfull \hbox (badness 4518) in paragraph at lines 10587--10592 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1551] [1552] [1553] [1554] [1555] Underfull \hbox (badness 2142) in paragraph at lines 10948--10951 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ [1556] Underfull \hbox (badness 1253) in paragraph at lines 10967--10970 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][ ]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it- er-a-tion. Hence, [1557] Underfull \hbox (badness 1708) in paragraph at lines 11029--11033 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1558] [1559] [1560] [1561] [1562] [1563] Underfull \hbox (badness 1694) in paragraph at lines 11425--11428 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1564] [1565] [1566] [1567] [1568] [1569] [1570] [1571]pdfTeX warning (ext4): d estination with the same identifier (name{Rfn.hat}) has been already used, dupl icate ignored \relax l.11909 \aliasA{hat}{influence.measures}{hat} [1572] [1573] Underfull \hbox (badness 1484) in paragraph at lines 12051--12053 []\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1574] [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] Underfull \hbox (badness 10000) in paragraph at lines 12650--12652 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa ult[][][] \T1/ptm/m/n/10 when \T1/zi4/m/n/10 SSinit = [1584] [1585] [1586] [1587] [1588] [1589] Underfull \hbox (badness 2894) in paragraph at lines 12986--12990 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1590] [1591] [1592] [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601] Underfull \hbox (badness 4518) in paragraph at lines 13737--13742 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1602] [1603] [1604] [1605] [1606] [1607] [1608] [1609] [1610] Underfull \hbox (badness 4518) in paragraph at lines 14390--14395 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1611] [1612] [1613] Underfull \hbox (badness 8151) in paragraph at lines 14528--14532 []\T1/ptm/m/n/10 Only for the (de-fault) case \T1/zi4/m/n/10 (surface = "interp olate",statistics = Underfull \hbox (badness 1199) in paragraph at lines 14535--14537 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if \T1/zi4/m/n/10 family \T1/ptm/m/n/10 is [1614] [1615] [1616] [1617] [1618] [1619] [1620] [1621] [1622] [1623] [1624] [1625] [1626] [1627] [1628] [1629] [1630] [1631] Underfull \hbox (badness 2503) in paragraph at lines 15611--15615 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1632] [1633] [1634] [1635] [1636] [1637] [1638] [1639] Underfull \hbox (badness 10000) in paragraph at lines 16124--16130 []\T1/zi4/m/n/10 model.extract(m,"offset") \T1/ptm/m/n/10 and \T1/zi4/m/n/10 mo del.extract(m,"response") \T1/ptm/m/n/10 are equiv-a-lent to Underfull \hbox (badness 1867) in paragraph at lines 16124--16130 \T1/zi4/m/n/10 model.offset(m) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response (m) \T1/ptm/m/n/10 re-spec-tively. \T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 s ums any terms [1640] [1641] [1642] [1643] [1644] [1645] [1646] [1647] [1648] [1649] [1650] [1651] [1652] [1653] [1654] [1655] [1656] [1657] [1658] [1659] [1660] [1661] [1662] [1663] [1664] [1665] Underfull \hbox (badness 1158) in paragraph at lines 17767--17770 []\T1/ptm/m/n/10 the ex-pres-sion that was passed to \T1/zi4/m/n/10 nls \T1/ptm /m/n/10 as the data ar-gu-ment. The ac- [1666] [1667] Underfull \vbox (badness 3803) has occurred while \output is active [1668] Underfull \vbox (badness 10000) has occurred while \output is active [1669] Underfull \vbox (badness 10000) has occurred while \output is active [1670] [1671] [1672] [1673] [1674] [1675] [1676] [1677] [1678] [1679] [1680] [1681] [1682] [1683] Underfull \hbox (badness 1377) in paragraph at lines 18790--18795 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 18795--18798 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 2343) in paragraph at lines 18808--18812 []\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i t is un-able to re-duce Underfull \hbox (badness 3471) in paragraph at lines 18808--18812 \T1/ptm/m/n/10 the value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + re ltol) \T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 18816--18820 []\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \ T1/ptm/m/n/10 meth-ods if [1684] [1685] [1686] Underfull \vbox (badness 10000) has occurred while \output is active [1687] Overfull \hbox (15.73795pt too wide) in paragraph at lines 19041--19041 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Overfull \hbox (3.75941pt too wide) in paragraph at lines 19044--19044 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1688] [1689] [1690] [1691] [1692] [1693] [1694] Underfull \hbox (badness 1337) in paragraph at lines 19503--19506 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1695] [1696] [1697] [1698] [1699] [1700] [1701] [1702] [1703] Underfull \hbox (badness 3049) in paragraph at lines 20001--20005 []\T1/ptm/m/n/10 In the Cook's dis-tance vs leverage/(1-leverage) plot, con-tou rs of stan-dard-ized resid-u-als [1704] [1705] [1706] [1707] Underfull \hbox (badness 1194) in paragraph at lines 20264--20267 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1708] [1709] [1710] [1711] [1712] [1713] [1714] Underfull \hbox (badness 2503) in paragraph at lines 20643--20646 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , Underfull \hbox (badness 3919) in paragraph at lines 20670--20672 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1 /ptm/m/n/10 or \T1/zi4/m/n/10 "Comparison of Poisson [1715] [1716] [1717] [1718] [1719] [1720] [1721] [1722] [1723] [1724] [1725] [1726] [1727] [1728] [1729] [1730] [1731] [1732] Underfull \hbox (badness 10000) in paragraph at lines 21748--21754 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][ ][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 , [1733] [1734] [1735] [1736] [1737] [1738] [1739] [1740] [1741] [1742] [1743] [1744] [1745] [1746] [1747] [1748] [1749] [1750] [1751] [1752] [1753] [1754] [1755] Underfull \hbox (badness 1337) in paragraph at lines 23105--23111 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1756] [1757] [1758] [1759] [1760] [1761] [1762] Underfull \hbox (badness 3780) in paragraph at lines 23530--23533 []\T1/ptm/m/n/10 used only when \T1/zi4/m/n/10 names \T1/ptm/m/n/10 is true: th e pre-ci-sion to use when for-mat- Underfull \hbox (badness 1152) in paragraph at lines 23530--23533 \T1/ptm/m/n/10 ting the per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-s ions up to 4.0.x, this had been set to [1763] Underfull \hbox (badness 10000) in paragraph at lines 23671--23672 []\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . or g / wiki / Quantile # Estimating _ quantiles _ from _ a _ [1764] [1765] [1766] [1767] [1768] Underfull \hbox (badness 10000) in paragraph at lines 23955--23958 []\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by Underfull \hbox (badness 4205) in paragraph at lines 23955--23958 \T1/zi4/m/n/10 cutree(hclust.obj,k = k)\T1/ptm/m/n/10 , can be spec-i-fied for ef-fi-ciency if al-ready [1769] [1770] [1771] [1772] [1773] [1774] [1775] [1776] [1777] [1778] [1779] Underfull \hbox (badness 1824) in paragraph at lines 24632--24638 []\T1/ptm/m/n/10 Here, all the NAs in \T1/zi4/m/n/10 x \T1/ptm/m/n/10 are first re-placed by al-ter- Underfull \hbox (badness 1033) in paragraph at lines 24632--24638 \T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/ m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where [1780] Underfull \hbox (badness 10000) in paragraph at lines 24653--24656 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run med(x,k) \T1/ptm/m/n/10 sim-ply has \T1/zi4/m/n/10 y[j] = Underfull \hbox (badness 3690) in paragraph at lines 24722--24726 [][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's end point rule and is called by de-fault from [1781] Underfull \vbox (badness 3803) has occurred while \output is active [1782] [1783] [1784] [1785] [1786] [1787] [1788] [1789] Underfull \hbox (badness 2165) in paragraph at lines 25234--25239 []\T1/ptm/m/n/10 Each of the fol-low-ing are \T1/zi4/m/n/10 "selfStart" \T1/ptm /m/n/10 mod-els (with ex-am-ples) [][]\T1/zi4/m/n/10 SSasymp[][][]\T1/ptm/m/n/1 0 , [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [1790] [1791] [1792] [1793] Underfull \hbox (badness 1867) in paragraph at lines 25439--25441 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 25454--25458 []\T1/ptm/m/n/10 where \T1/zi4/m/n/10 NN <-[][]nobs[][][](object,use.fallback = use.fallback) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 PP [1794] [1795] [1796] [1797] [1798] [1799] [1800] [1801] [1802] [1803] [1804] [1805] [1806] [1807] [1808] [1809] [1810] [1811] [1812] [1813] [1814] [1815] [1816] [1817] Underfull \vbox (badness 10000) has occurred while \output is active [1818] Underfull \hbox (badness 3514) in paragraph at lines 27017--27022 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1819] [1820] [1821] [1822] Overfull \hbox (2.23795pt too wide) in paragraph at lines 27251--27251 [] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] [1823] Underfull \hbox (badness 3514) in paragraph at lines 27287--27293 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1824] Overfull \hbox (20.23795pt too wide) in paragraph at lines 27344--27344 []\T1/zi4/m/n/9 fmX1 <- nls(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), data = d atN, control = list(scaleOffset=1))[] Overfull \hbox (11.22874pt too wide) in paragraph at lines 27346--27346 [] \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=1 e-11, nDcentral=TRUE), trace=TRUE)[] [1825] [1826] [1827] Underfull \hbox (badness 3514) in paragraph at lines 27520--27525 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1828] [1829] Underfull \hbox (badness 3514) in paragraph at lines 27607--27612 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1830] Underfull \hbox (badness 3514) in paragraph at lines 27672--27677 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1831] [1832] Underfull \hbox (badness 3514) in paragraph at lines 27766--27771 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1833] Underfull \hbox (badness 6691) in paragraph at lines 27858--27863 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p tm/m/n/10 . It is the value of the ex-pres-sion [1834] [1835] [1836] [1837] [1838] [1839] [1840] [1841] Underfull \hbox (badness 4024) in paragraph at lines 28349--28352 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion , which [1842] [1843] [1844] [1845] [1846] [1847] [1848] [1849] [1850] [1851] Underfull \hbox (badness 5431) in paragraph at lines 28955--28957 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1852] [1853] [1854] [1855] Underfull \hbox (badness 5431) in paragraph at lines 29165--29168 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1856] [1857] [1858] [1859] [1860] Underfull \hbox (badness 1337) in paragraph at lines 29480--29484 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1861] [1862] [1863] [1864] [1865] Underfull \hbox (badness 1616) in paragraph at lines 29792--29795 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1866] [1867] [1868] [1869] [1870] [1871] [1872] [1873] [1874] [1875] [1876] [1877] [1878] [1879] [1880] [1881] [1882] [1883] [1884] Underfull \hbox (badness 3557) in paragraph at lines 30927--30931 []\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect \T1/zi4 /m/n/10 interval = [1885] [1886] [1887] Underfull \vbox (badness 10000) has occurred while \output is active [1888] [1889] [1890] Underfull \hbox (badness 1337) in paragraph at lines 31291--31295 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1891] [1892] [1893] [1894] [1895] [1896] [1897] [1898] [1899] Underfull \hbox (badness 1337) in paragraph at lines 31820--31824 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of Underfull \hbox (badness 10000) in paragraph at lines 31834--31836 []\T1/ptm/m/n/10 (when \T1/zi4/m/n/10 conf.int \T1/ptm/m/n/10 is true:) a pos-i -tive nu-meric tol-er-ance, used in [1900] [1901] [1902] Overfull \hbox (0.71648pt too wide) in paragraph at lines 32027--32027 []\T1/zi4/m/n/9 wilcox.test( 4:2, 3:1, paired=TRUE) # Warning: canno t compute exact p-value with ties[] [1903] [1904] [1905] Overfull \hbox (19.71954pt too wide) in paragraph at lines 32188--32188 [] \T1/zi4/m/n/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.eps = getOption("ts.eps"), ...)[] [1906] [1907] [1908] [1909] [1910]) (./stats4-pkg.tex Chapter 11. [1911] [1912] [1913] Underfull \vbox (badness 10000) has occurred while \output is active [1914] Underfull \vbox (badness 10000) has occurred while \output is active [1915] [1916] [1917] [1918]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.show.Rdash.methods}) has been already used, duplicate ignored \relax l.503 ...Package \pkg{stats4}}{show.Rdash.methods} [1919] [1920] [1921]) (./tcltk-pkg.tex [1922] Chapter 12. [1923] [1924] [1925] [1926] [1927] [1928] [1929] Underfull \vbox (badness 10000) has occurred while \output is active [1930] Underfull \vbox (badness 10000) has occurred while \output is active [1931] Underfull \hbox (badness 1546) in paragraph at lines 666--673 []\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing any Tk or Tcl com-mand by sim-ply run-ning [1932] [1933] [1934] [1935] [1936] Underfull \vbox (badness 10000) has occurred while \output is active [1937] [1938] [1939] [1940] [1941] [1942] [1943] [1944]) (./tools-pkg.tex Chapter 13. [1945] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1946] Underfull \hbox (badness 3039) in paragraph at lines 167--170 []\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1947] [1948] Underfull \hbox (badness 1308) in paragraph at lines 288--301 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 288--301 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 288--301 \T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 formatMastersthesis\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 288--301 \T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm /m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma tTechreport \T1/ptm/m/n/10 and [1949] [1950] Underfull \hbox (badness 3039) in paragraph at lines 392--394 []\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine to use. Over-rides any [1951] Underfull \hbox (badness 1142) in paragraph at lines 463--467 \T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s ub-di-rec-tory [1952] [1953] [1954] [1955] [1956] [1957] [1958] [1959] [1960] [1961] [1962] [1963] Underfull \hbox (badness 1014) in paragraph at lines 1174--1176 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1180--1182 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous [1964] Underfull \hbox (badness 10000) in paragraph at lines 1217--1220 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1217--1220 \T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 , [1965] [1966] [1967] [1968] [1969] Underfull \hbox (badness 2293) in paragraph at lines 1569--1571 []\T1/zi4/m/n/10 CRAN_memtest_notes() \T1/ptm/m/n/10 is now dep-re-cated, with its func-tion-al-ity in-te-grated into that of [1970] [1971] Underfull \hbox (badness 7981) in paragraph at lines 1707--1715 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of Underfull \hbox (badness 1082) in paragraph at lines 1717--1719 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see [1972] [1973] [1974] [1975]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.GSC}) has been already used, duplicate ignored \relax l.1919 \aliasA{GSC}{find\_gs\_cmd}{GSC} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ig nored \relax l.1920 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [1976] [1977] [1978] [1979] [1980] Overfull \hbox (17.27782pt too wide) in paragraph at lines 2222--2222 []\T1/zi4/m/n/9 writeLines(paste0("\\newcommand{\\logo}{\\if{html}{\\figure{Rl ogo.svg}{options: width=100}",[] [1981] [1982] [1983] Underfull \hbox (badness 7981) in paragraph at lines 2391--2399 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1984] [1985] [1986] [1987] [1988] [1989] [1990] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2885. LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2886. LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2886. [1991] [1992] [1993] [1994] [1995] Underfull \hbox (badness 1424) in paragraph at lines 3177--3179 []\T1/zi4/m/it/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t or of links, as re-turned by [1996] [1997] [1998] [1999] [2000] [2001] [2002] [2003] [2004] [2005] [2006] Underfull \hbox (badness 10000) in paragraph at lines 3878--3880 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [2007] [2008] Underfull \hbox (badness 10000) in paragraph at lines 4017--4020 []\T1/ptm/m/n/10 Where sup-ported (\T1/zi4/m/it/10 texi2dvi \T1/ptm/m/n/10 5.0 and later; \T1/zi4/m/it/10 texify.exe \T1/ptm/m/n/10 from MiK-TeX), op-tion [2009] [2010] Underfull \hbox (badness 1137) in paragraph at lines 4119--4121 []\T1/ptm/m/n/10 a ma-trix spec-i-fy-ing all pack-ages in-stalled on the lo-cal sys-tem, as from [2011] [2012] [2013] [2014] [2015] Underfull \hbox (badness 1796) in paragraph at lines 4427--4432 []\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over \T 1/zi4/m/it/10 write_PACKAGES \T1/ptm/m/n/10 in the \T1/zi4/m/it/10 type == [2016] Underfull \hbox (badness 1838) in paragraph at lines 4501--4507 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/it/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4501--4507 \T1/ptm/m/n/10 `\T1/zi4/m/it/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [2017] [2018] [2019] [2020] Underfull \hbox (badness 2197) in paragraph at lines 4776--4786 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][]\T1/zi4 /m/it/10 available.packages[][][]\T1/ptm/m/n/10 : [2021] Underfull \hbox (badness 1571) in paragraph at lines 4842--4846 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [2022] [2023] [2024]) (./utils-pkg.tex Chapter 14. [2025] Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/it/10 insertions\T1/ptm/m/n/10 ', [2026] [2027] [2028] [2029] [2030] Underfull \hbox (badness 10000) in paragraph at lines 378--383 \T1/zi4/m/it/10 c("vertical","horizontal","cascade","minimize","restore") \T1/p tm/m/n/10 with [2031] [2032] [2033] [2034] [2035] Underfull \hbox (badness 10000) in paragraph at lines 720--726 []\T1/ptm/m/n/10 Functions \T1/zi4/m/it/10 aspell_package_Rd_files\T1/ptm/m/n/1 0 , \T1/zi4/m/it/10 aspell_package_vignettes\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 720--726 \T1/zi4/m/it/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/it/10 aspel l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the [2036] [2037] Underfull \hbox (badness 5847) in paragraph at lines 857--863 []\T1/ptm/m/n/10 Argument \T1/zi4/m/it/10 filters \T1/ptm/m/n/10 can be used to se-lect which of the pack-ages on the repos-i-to- Underfull \hbox (badness 4229) in paragraph at lines 857--863 \T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi 4/m/it/10 NULL\T1/ptm/m/n/10 ) by func-tions such as [2038] Underfull \hbox (badness 3861) in paragraph at lines 925--930 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/it/10 "O S_type"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/it/ 10 "License_is_FOSS"\T1/ptm/m/n/10 , [2039] [2040] [2041] Underfull \hbox (badness 3323) in paragraph at lines 1108--1116 []\T1/ptm/m/n/10 (\T1/ptm/m/it/10 deprecated\T1/ptm/m/n/10 , use \T1/zi4/m/it/1 0 bibtex = T|F \T1/ptm/m/n/10 in-stead!) a num-ber, say $\OML/cmm/m/it/10 m$\T1 /ptm/m/n/10 , in-di-cat- Underfull \hbox (badness 2961) in paragraph at lines 1108--1116 \T1/ptm/m/n/10 ing that the bib-tex code should be given in ad-di-tion to the f or-mat- Underfull \hbox (badness 3919) in paragraph at lines 1108--1116 \T1/ptm/m/n/10 ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not more t han $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is Underfull \hbox (badness 3735) in paragraph at lines 1108--1116 \T1/ptm/m/n/10 taken as [][]\T1/zi4/m/it/10 getOption[][][]("citation.bibtex.ma x",1) \T1/ptm/m/n/10 which is \T1/zi4/m/it/10 1 \T1/ptm/m/n/10 typ-i-cally. Underfull \hbox (badness 1817) in paragraph at lines 1108--1116 \T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f ault by Underfull \hbox (badness 10000) in paragraph at lines 1120--1122 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [2042] [2043] [2044] [2045] [2046] [2047] [2048] [2049] Underfull \hbox (badness 1371) in paragraph at lines 1625--1627 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/it/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/it/10 ccaddress \T1/ptm/m/n/10 to pass to [2050] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 1695. [2051] [2052] [2053] [2054] [2055] [2056] [2057] [2058] [2059] [2060] Underfull \hbox (badness 2057) in paragraph at lines 2346--2348 []\T1/ptm/m/n/10 None for \T1/zi4/m/it/10 chooseCRANmirror()\T1/ptm/m/n/10 , th is func-tion is in-voked for its side ef-fect of up-dat-ing [2061] [2062] [2063] [2064] [2065] [2066]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.clipboard}) has been already used, duplicate ig nored \relax l.2697 ... the Clipboard in MS Windows}{clipboard} [2067] [2068] [2069] Underfull \hbox (badness 1748) in paragraph at lines 2864--2867 []\T1/ptm/m/n/10 A [][]\T1/zi4/m/it/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4 /m/it/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/it/10 simplify \T1/ptm/m /n/10 ar-gu-ment above. In the lat-ter case, the iden-tity [2070] [2071] [2072] [2073] [2074] [2075] Underfull \hbox (badness 5388) in paragraph at lines 3274--3278 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/it/10 .tab\T1/ptm/m/n/10 ', `\T1/zi4/ m/it/10 .txt\T1/ptm/m/n/10 ' or `\T1/zi4/m/it/10 .TXT\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/it/10 read.table[][][](...,header = Underfull \hbox (badness 2285) in paragraph at lines 3279--3282 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/it/10 .csv\T1/ptm/m/n/10 ' or `\T1/zi 4/m/it/10 .CSV\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/it/10 read.table[] [][](...,header = TRUE,sep = [2076] [2077] [2078] [2079] [2080] [2081] [2082] [2083] [2084] [2085] [2086] [2087] Underfull \hbox (badness 1430) in paragraph at lines 4063--4071 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the \T1/zi4/m/it/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the [2088] Underfull \hbox (badness 1231) in paragraph at lines 4140--4152 []\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers via en-vi-ron-ment vari-able [2089] [2090] Underfull \hbox (badness 10000) in paragraph at lines 4297--4299 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][]\T1/zi4/m/it/10 dow nload.file[][][] \T1/ptm/m/n/10 and [2091] [2092] [2093] [2094] [2095] [2096] [2097] [2098] [2099] [2100] [2101]pdf TeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.4995 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.format.1}) has been already used, dupl icate ignored \relax l.4995 ...mat Unordered and Ordered Lists}{format} [2102] [2103] [2104] [2105] [2106] [2107] [2108] [2109] Underfull \hbox (badness 1622) in paragraph at lines 5514--5518 []\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing to ex-ter-nal GUIs or to the [2110] [2111] [2112] [2113] [2114] [2115] [2116] [2117] Underfull \vbox (badness 3803) has occurred while \output is active [2118] [2119] [2120] [2121] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 6232. Underfull \hbox (badness 1371) in paragraph at lines 6236--6238 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/it/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/it/10 ccaddress \T1/ptm/m/n/10 to pass to [2122] Underfull \hbox (badness 1502) in paragraph at lines 6325--6330 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 6325--6330 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [2123] [2124] [2125] Underfull \hbox (badness 10000) in paragraph at lines 6498--6507 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, [2126] Underfull \hbox (badness 2150) in paragraph at lines 6562--6565 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [2127] [2128] Underfull \hbox (badness 3118) in paragraph at lines 6701--6703 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [2129] [2130] [2131] Underfull \hbox (badness 1325) in paragraph at lines 6880--6884 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/it/10 available.packag es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able Underfull \hbox (badness 4726) in paragraph at lines 6892--6898 \T1/ptm/m/n/10 used if \T1/zi4/m/it/10 repos = NULL\T1/ptm/m/n/10 . Can also be a char-ac-ter vec-tor, a sub-set of [2132] Underfull \hbox (badness 10000) in paragraph at lines 6964--6967 []\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to be Underfull \hbox (badness 10000) in paragraph at lines 6964--6967 \T1/ptm/m/n/10 passed to \T1/zi4/m/it/10 R CMD INSTALL \T1/ptm/m/n/10 for a sou rce pack-age in-stall. E.g., Underfull \hbox (badness 1424) in paragraph at lines 6972--6975 []\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p tm/m/it/10 not \T1/ptm/m/n/10 passed to [2133] Underfull \hbox (badness 3219) in paragraph at lines 7043--7050 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/it/ 10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 7043--7050 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 7043--7050 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by Underfull \hbox (badness 1596) in paragraph at lines 7043--7050 [][]\T1/zi4/m/it/10 getOption[][][]("install.packages.compile.from.source")\T1/ ptm/m/n/10 . \T1/zi4/m/it/10 type = "both" \T1/ptm/m/n/10 will be silently Underfull \hbox (badness 2932) in paragraph at lines 7051--7054 []\T1/ptm/m/n/10 Using pack-ages with \T1/zi4/m/it/10 type = "source" \T1/ptm/m /n/10 al-ways works pro-vided the pack-age con-tains no [2134] Underfull \hbox (badness 1546) in paragraph at lines 7177--7180 []\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing \T1/zi4/m/it/10 available.pa ckages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 ,] \T1/ptm/m /n/10 will [2135] Underfull \hbox (badness 10000) in paragraph at lines 7210--7215 [][][]\T1/zi4/m/it/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 download.packages [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 installed.packages[][][]\T1/ptm/m/n/ 10 , [2136] [2137] [2138] [2139] [2140] [2141] [2142] [2143] [2144] [2145] [2146] [2147] [2148] Underfull \hbox (badness 10000) in paragraph at lines 7997--7999 []\T1/ptm/m/n/10 typically the re-sult of \T1/zi4/m/it/10 methods(..)\T1/ptm/m/ n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class [2149] [2150] [2151] [2152] [2153] [2154] [2155] [2156] [2157] [2158] [2159] [2160] Underfull \hbox (badness 10000) in paragraph at lines 8735--8737 []\T1/ptm/m/n/10 for \T1/zi4/m/it/10 asDateBuilt()\T1/ptm/m/n/10 , a [][]\T1/zi 4/m/it/10 character[][][] \T1/ptm/m/n/10 string as from Underfull \hbox (badness 2310) in paragraph at lines 8757--8762 []\T1/ptm/m/n/10 If a `\T1/zi4/m/it/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [2161] [2162] [2163] [2164] [2165] [2166] [2167] [2168] [2169] Underfull \hbox (badness 1248) in paragraph at lines 9283--9287 []\T1/zi4/m/it/10 R CMD build \T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/m/ n/10 source tar-balls. The name(s) of the pack-ages are taken from the [2170] Underfull \hbox (badness 1789) in paragraph at lines 9363--9365 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [2171] [2172] [2173] [2174] [2175] [2176] [2177] [2178] [2179] [2180] [2181] [2182] Underfull \hbox (badness 1097) in paragraph at lines 10200--10203 []\T1/ptm/m/n/10 The name \T1/zi4/m/it/10 "clipboard" \T1/ptm/m/n/10 may also b e used on Win-dows, in which case [2183] [2184] Underfull \hbox (badness 3000) in paragraph at lines 10336--10341 [][][]\T1/zi4/m/it/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/it/10 read.t able[][][]\T1/ptm/m/n/10 ; [2185] [2186] [2187] [2188] [2189] [2190] [2191] [2192] [2193] Underfull \hbox (badness 2134) in paragraph at lines 10925--10930 [][][]\T1/zi4/m/it/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/it/10 write. table[][][]\T1/ptm/m/n/10 ; [2194] Underfull \hbox (badness 10000) in paragraph at lines 10981--10986 []\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for Underfull \hbox (badness 10000) in paragraph at lines 10981--10986 \T1/zi4/m/it/10 HKEY_LOCAL_MACHINE\T1/ptm/m/n/10 , \T1/zi4/m/it/10 HKEY_CLASSES _ROOT\T1/ptm/m/n/10 . \T1/zi4/m/it/10 HKEY_CURRENT_USER\T1/ptm/m/n/10 , [2195] [2196] [2197] [2198] [2199] [2200] [2201] [2202] [2203] Underfull \hbox (badness 2469) in paragraph at lines 11475--11479 []\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia , The Free En-cy-clo-pe-dia. Underfull \hbox (badness 3428) in paragraph at lines 11475--11479 [][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / w / index . php ? title = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac- [2204] [2205] [2206] [2207] [2208] [2209] Underfull \hbox (badness 4060) in paragraph at lines 11891--11894 []\T1/ptm/m/n/10 If `\T1/zi4/m/it/10 --default-packages\T1/ptm/m/n/10 ' is not used, then \T1/zi4/m/it/10 Rscript \T1/ptm/m/n/10 checks the en-vi-ron-ment var i-able Overfull \hbox (18.77168pt too wide) in paragraph at lines 11914--11914 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] [2210] [2211] [2212] [2213] Underfull \hbox (badness 2150) in paragraph at lines 12162--12164 [][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/ ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / www . gnu . org / software / emac s / manual / [2214] [2215] [2216] [2217] Underfull \hbox (badness 10000) in paragraph at lines 12381--12385 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/it/10 stylepath \T1/ptm/m/n/10 is n ow taken from the en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 12412--12418 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a [2218] [2219] Underfull \hbox (badness 1009) in paragraph at lines 12606--12618 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If [2220] Underfull \hbox (badness 4779) in paragraph at lines 12646--12648 []\T1/ptm/m/n/10 The file `\T1/zi4/m/it/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure s the R GUI (\T1/zi4/m/it/10 Rgui\T1/ptm/m/n/10 ) con-sole un-der MS Win-dows a nd Underfull \hbox (badness 1077) in paragraph at lines 12676--12683 \T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p er-sonal' di-rec-tory, oth-er-wise to [2221] [2222] [2223] [2224] [2225] [2226] [2227] Underfull \hbox (badness 3780) in paragraph at lines 13084--13088 []\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1 /zi4/m/it/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via Underfull \hbox (badness 2635) in paragraph at lines 13100--13103 []\T1/ptm/m/n/10 Repository `\T1/zi4/m/it/10 CRAN\T1/ptm/m/n/10 ' is treated sp e-cially: the value is taken from the cur-rent set-ting of [2228] [2229] [2230] [2231] Underfull \hbox (badness 2302) in paragraph at lines 13305--13307 []\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t o the Win-dows API call [2232] [2233] [2234] [2235] Underfull \hbox (badness 10000) in paragraph at lines 13603--13608 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/it/10 TRUE \T1/ptm/m/n/10 (de-fault), [] []\T1/zi4/m/it/10 deparse[][][](control = ) \T1/ptm/m/n/10 will not have Underfull \hbox (badness 5970) in paragraph at lines 13612--13615 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive [2236] [2237] Underfull \vbox (badness 3803) has occurred while \output is active [2238] [2239] [2240] [2241] [2242] [2243] Underfull \hbox (badness 2932) in paragraph at lines 14050--14057 []\T1/ptm/m/n/10 If \T1/zi4/m/it/10 syntax = NULL \T1/ptm/m/n/10 (the de-fault) then the avail-able syn-tax ob-jects are con-sulted in turn, Underfull \hbox (badness 1688) in paragraph at lines 14050--14057 \T1/ptm/m/n/10 and se-lected if their \T1/zi4/m/it/10 extension \T1/ptm/m/n/10 com-po-nent matches (as a reg-exp) the file name. Ob- [2244] [2245] [2246] [2247] Underfull \hbox (badness 6510) in paragraph at lines 14358--14362 []\T1/ptm/m/n/10 When ar-gu-ment \T1/zi4/m/it/10 tar \T1/ptm/m/n/10 is set to t he com-mand \T1/zi4/m/it/10 tar \T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment vari-a ble Underfull \hbox (badness 10000) in paragraph at lines 14365--14368 [][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / pubs . opengroup . org / Underfull \hbox (badness 2245) in paragraph at lines 14365--14368 \T1/zi4/m/it/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9 2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX [2248] [2249] [2250] [2251] [2252] [2253] [2254] [2255] [2256] [2257] Underfull \hbox (badness 10000) in paragraph at lines 15032--15037 []\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/it/10 destdir \T1/ptm/m/n/10 and \ T1/zi4/m/it/10 dependencies \T1/ptm/m/n/10 to be passed to Underfull \hbox (badness 3861) in paragraph at lines 15032--15037 [][]\T1/zi4/m/it/10 install.packages[][][] \T1/ptm/m/n/10 and \T1/zi4/m/it/10 i gnore_repo_cache\T1/ptm/m/n/10 , \T1/zi4/m/it/10 max_repo_cache_age \T1/ptm/m/n /10 and Underfull \hbox (badness 1052) in paragraph at lines 15038--15040 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. See [2258] Underfull \hbox (badness 10000) in paragraph at lines 15097--15100 [][][]\T1/zi4/m/it/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1 0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 download.package s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 installed.packages[][][]\T1/ptm/m/n /10 , [2259] [2260] [2261] [2262] [2263] [2264] [2265] [2266] [2267] [2268] [2269] [2270] [2271] Underfull \hbox (badness 10000) in paragraph at lines 15875--15877 []\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec- tion e.g. \T1/zi4/m/it/10 file = [2272] [2273] [2274]) No file fullrefman.ind. (./fullrefman.aux) LaTeX Font Warning: Some font shapes were not available, defaults substituted. Package rerunfilecheck Warning: File `fullrefman.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information)pdfTeX warning (dest): name {Rfn.write.matrix} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.lmList} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.dgTMatrix} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.glht} has been referenced but does not exist, r eplaced by a fixed one pdfTeX warning (dest): name{Rfn.survreg} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.coxph} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.stepAIC} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.rinvGauss} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.gamma.shape} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.profile.glm} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.cov.mcd} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.cov.mve} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.Insurance} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.sparse.model.matrix} has been referenced but do es not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.lqs} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.logLik.lme} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.logLik.gls} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.lmrob} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.rlm} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.wilcox.Rul.test} has been referenced but does n ot exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.loglm} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.nlsList} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.daisy} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.spearman.test} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.pSpearman} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.pKendall} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.Kendall} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.cor.fk} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.dMatrix} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.dgCMatrix} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.confint.nls} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.confint.glm} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.sammon} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.isoMDS} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.width.SJ} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.bcv} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.ucv} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.bandwidth.nrd} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.agnes} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.diana} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.lme} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.ansari.Rul.test} has been referenced but does n ot exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.rpart} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.sparseMatrix} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.showDefault} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getGroupMembers} has been referenced but does n ot exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.resetGeneric} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.linearizeMlist} has been referenced but does no t exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getGeneric} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getMethodsForDispatch} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.setDataPart} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getDataPart} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.rBind} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.cBind} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.possibleExtends} has been referenced but does n ot exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.panel.identify} has been referenced but does no t exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.trellis.focus} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.mosaic} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.levelplot} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.contourplot} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.assoc} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.dpih} has been referenced but does not exist, r eplaced by a fixed one pdfTeX warning (dest): name{Rfn.truehist} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.bkde2D} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.which.is.max} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.roundX} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getNamespace} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.asNamespace} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.formalArgs} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.isRematched} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.chron} has been referenced but does not exist, replaced by a fixed one {/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc} kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 tctt0900 mkdir: cannot create directory ‘././sbuild-nonexistent’: Permission denied mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input tctt0900 This is METAFONT, Version 2.71828182 (TeX Live 2022/dev/Debian) (preloaded base=mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tctt0900.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tctt.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymb.mf Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txpseudo.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txaccent.mf Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [27] [29]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txgen.mf Ok [100] [109] [98] [99] [108]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymbol.mf Ok [13] [18] [21] [22] [23] [24] [25] [26] [28] [31] [32] [36] [39] [44] [45] [46] [42] [47] [60] [61] [62] [77] [79] [87] [110] [91] [93] [94] [95] [96] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [171] [172] [173] [174] [175] [177] [176] [180] [181] [182] [183] [184] [187] [191] [214] [246]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txromod.mf Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrsuper.mf Ok [185] [178] [179] [170] [186]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrfract.mf Ok [188] [189] [190]) ) ) ) Font metrics written on tctt0900.tfm. Output written on tctt0900.600gf (128 characters, 17564 bytes). Transcript written on tctt0900.log. mktexpk: /tmp/texfonts/pk/ljfour/jknappen/ec/tctt0900.600pk: successfully generated. {/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}{/ usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-t1-0.enc} Output written on fullrefman.pdf (2277 pages, 5720236 bytes). Transcript written on fullrefman.log. This is makeindex, version 2.15 [TeX Live 2022/dev] (kpathsea + Thai support). Scanning input file fullrefman.idx..................done (14524 entries accepted, 35 rejected). Sorting entries...................................................................................................................................................................done (238768 comparisons). Generating output file fullrefman.ind.................done (14470 lines written, 50 warnings). Output written in fullrefman.ind. Transcript written in fullrefman.ilg. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./fullrefman.tex LaTeX2e <2021-06-01> patch level 1 L3 programming layer <2021-08-27> (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2021/02/12 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (../../share/texmf/tex/latex/Rd.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/zi4.sty `inconsolata-zi4' v1.12, 2019/05/17 Text macros for Inconsolata (msharpe) (/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/keyval.tex))))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref-langpatches.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 377. Package hyperref Warning: Option `pagebackref' has already been used, (hyperref) setting the option has no effect on input line 377. ) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg))) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty) Writing index file fullrefman.idx (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./fullrefman.aux) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (./fullrefman.out) (./fullrefman.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] (./fullrefman.toc (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd) [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29]) [30] (./base-pkg.tex Chapter 1. [1] [2] Underfull \hbox (badness 6995) in paragraph at lines 143--151 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1 /ptm/m/n/10 such that \T1/zi4/m/n/10 1 -x != 1\T1/ptm/m/n/10 . It Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/ptm/m/n/10 equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1/pt m/m/n/10 if \T1/zi4/m/n/10 double.base Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.rounding \T1/ptm/m/n/10 is 0; oth- er-wise, it is \T1/zi4/m/n/10 (double.base Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2\T1/ptm/m/n/10 . Nor-mally \T1/zi4/m /n/10 1.110223e-16\T1/ptm/m/n/10 . As Underfull \hbox (badness 4995) in paragraph at lines 143--151 \T1/zi4/m/n/10 double.neg.ulp.digits \T1/ptm/m/n/10 is bounded be-low by \T1/zi 4/m/n/10 -(double.digits + 3)\T1/ptm/m/n/10 , [3] [4] Underfull \hbox (badness 10000) in paragraph at lines 212--217 []\T1/ptm/m/n/10 when [][]\T1/zi4/m/n/10 capabilities[][][]("long.double") \T1/ ptm/m/n/10 is true, there are 10 such Underfull \hbox (badness 1675) in paragraph at lines 212--217 \T1/zi4/m/n/10 "longdouble." \T1/ptm/m/n/10 val-ues, spec-i-fy-ing the \T 1/zi4/m/n/10 long double \T1/ptm/m/n/10 prop-erty cor- [5] Underfull \hbox (badness 1178) in paragraph at lines 322--325 []\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/ 10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues [6] [7] [8] [9] Underfull \hbox (badness 2556) in paragraph at lines 561--567 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ', [10] [11] [12] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] (/usr/share/texlive/texmf-dist/tex/latex/base/t1cmtt.fd) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [23] [24] [25] Underfull \hbox (badness 10000) in paragraph at lines 1567--1573 [26] [27] [28] [29] [30] [31] [32] Overfull \hbox (26.27782pt too wide) in paragraph at lines 2045--2045 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [33] [34] [35] [36] [37] [38] Underfull \hbox (badness 10000) in paragraph at lines 2492--2494 []\T1/ptm/m/n/10 The val-ues of the splits can also be ob-tained (less ef-fi-ci ently) by Underfull \hbox (badness 10000) in paragraph at lines 2495--2500 [][][]\T1/zi4/m/n/10 apply[][][] \T1/ptm/m/n/10 al-ways sim-pli-fies com-mon le ngth re-sults, so at-tempt-ing to split via Underfull \hbox (badness 1102) in paragraph at lines 2495--2500 \T1/zi4/m/n/10 apply(x,MARGIN,identity) \T1/ptm/m/n/10 does not work (as it sim -ply gives \T1/zi4/m/n/10 x\T1/ptm/m/n/10 ). By chain-ing \T1/zi4/m/n/10 asplit [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] Underfull \hbox (badness 10000) in paragraph at lines 3890--3892 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [61] [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] Underfull \hbox (badness 2521) in paragraph at lines 5180--5182 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] [94] [95] [96] [97] [98] [99] Overfull \hbox (5.27168pt too wide) in paragraph at lines 6371--6371 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [100] [101] [102] [103] [104] [105] Overfull \hbox (46.35893pt too wide) in paragraph at lines 6837--6840 []\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa ult","internal","wininet","libcurl")\T1/ptm/m/n/10 : [106] [107] [108] Underfull \hbox (badness 10000) in paragraph at lines 7020--7023 []\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo st gen-eral form (from RFC1738) is [109] [110] Underfull \hbox (badness 6063) in paragraph at lines 7202--7208 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \ T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re- Underfull \hbox (badness 2343) in paragraph at lines 7202--7208 \T1/ptm/m/n/10 move a Byte Or-der Mark if present (which it of-ten is for files and web-pages gen-er- Underfull \hbox (badness 1708) in paragraph at lines 7202--7208 \T1/ptm/m/n/10 ated by Mi-crosoft ap-pli-ca-tions). If a BOM is re-quired (it i s not rec-om-mended) when Underfull \hbox (badness 1831) in paragraph at lines 7202--7208 \T1/ptm/m/n/10 writ-ing it should be writ-ten ex-plic-itly, e.g. by \T1/zi4/m/n /10 writeChar("\ufeff",con,eos = NULL) \T1/ptm/m/n/10 or [111] Underfull \hbox (badness 1303) in paragraph at lines 7264--7271 []\T1/zi4/m/n/10 file \T1/ptm/m/n/10 can be used with \T1/zi4/m/n/10 descriptio n = "clipboard" \T1/ptm/m/n/10 in mode \T1/zi4/m/n/10 "r" \T1/ptm/m/n/10 only. This reads the Underfull \hbox (badness 2111) in paragraph at lines 7275--7280 []\T1/ptm/m/n/10 Unix users wish-ing to \T1/ptm/m/it/10 write \T1/ptm/m/n/10 to one of the X11 se-lec-tions may be able to do so via [112] [113] Underfull \vbox (badness 3803) has occurred while \output is active [114] Underfull \vbox (badness 10000) has occurred while \output is active [115] [116] Underfull \hbox (badness 1077) in paragraph at lines 7593--7599 []\T1/ptm/m/n/10 A length-one log-i-cal vec-tor that is not \T1/zi4/m/n/10 NA\T 1/ptm/m/n/10 . Con-di-tions of length greater Underfull \hbox (badness 1231) in paragraph at lines 7593--7599 \T1/ptm/m/n/10 than one are cur-rently ac-cepted with a warn-ing, but only the first el-e- [117] [118] [119] [120] [121] [122] Underfull \hbox (badness 2096) in paragraph at lines 7948--7952 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [123] [124] Underfull \hbox (badness 2351) in paragraph at lines 8062--8065 [][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T 1/ptm/m/n/10 , [125] [126] [127] [128] [129] Underfull \hbox (badness 4479) in paragraph at lines 8388--8399 [][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[] [][] \T1/ptm/m/n/10 (for the col-umn names), [130] [131] [132] [133] [134] [135] [136] Underfull \hbox (badness 1629) in paragraph at lines 8839--8851 []\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a re ig-nored, and real times Underfull \hbox (badness 1609) in paragraph at lines 8839--8851 \T1/ptm/m/n/10 there is a prob-lem in the POSIX/C99 stan-dard with \T1/zi4/m/n/ 10 "1969-12-31 23:59:59 UTC"\T1/ptm/m/n/10 , which Underfull \hbox (badness 2426) in paragraph at lines 8839--8851 \T1/ptm/m/n/10 is \T1/zi4/m/n/10 -1 \T1/ptm/m/n/10 in cal-en-dar time and that value is on those OSes also used as an er-ror code. [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] Underfull \hbox (badness 1178) in paragraph at lines 9596--9600 []\T1/ptm/m/n/10 If true, [][]\T1/zi4/m/n/10 list[][][]\T1/ptm/m/n/10 s and ato mic vec-tors with non-[][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 names (see [][ ]\T1/zi4/m/n/10 names[][][]\T1/ptm/m/n/10 ) are de- [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] Underfull \hbox (badness 6396) in paragraph at lines 11228--11236 []\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len t method def-i-ni-tions for Underfull \hbox (badness 1946) in paragraph at lines 11228--11236 \T1/zi4/m/n/10 duplicated \T1/ptm/m/n/10 and \T1/zi4/m/n/10 anyDuplicated\T1/pt m/m/n/10 , \T1/zi4/m/n/10 anyDuplicated(x,...) \T1/ptm/m/n/10 is a ``gen-er-al- ized'' short-cut for [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188] Underfull \hbox (badness 4569) in paragraph at lines 12377--12381 []\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been passed as an ar-gu-ment Underfull \hbox (badness 2401) in paragraph at lines 12377--12381 \T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller' s en-vi-ron-ment, i.e., one needs [189] [190] [191] [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] Underfull \hbox (badness 2253) in paragraph at lines 14062--14064 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [215] Underfull \hbox (badness 1565) in paragraph at lines 14138--14142 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/ 10 , and [216] Underfull \hbox (badness 4927) in paragraph at lines 14182--14184 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m /n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with \T1/zi4 /m/n/10 fsep = [217] [218] Underfull \hbox (badness 3148) in paragraph at lines 14284--14289 [][][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 help[][][]\T1/ptm/m/n/10 ; [][]\T1/zi4 /m/n/10 RShowDoc[][][] \T1/ptm/m/n/10 call \T1/zi4/m/n/10 file.show() \T1/ptm/m /n/10 for \T1/zi4/m/n/10 type = "text"\T1/ptm/m/n/10 . Con-sider Underfull \hbox (badness 1466) in paragraph at lines 14331--14334 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/ zi4/m/n/10 file.copy \T1/ptm/m/n/10 and [219] [220] Underfull \hbox (badness 10000) in paragraph at lines 14458--14462 [][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [ ][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 14469--14472 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [221] [222] [223] [224] [225] Underfull \hbox (badness 3965) in paragraph at lines 14766--14770 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [226] [227] [228] [229] [230] [231] [232] [233] [234] [235] [236] [237] Underfull \hbox (badness 4429) in paragraph at lines 15546--15549 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] \T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for [238] [239] Underfull \hbox (badness 10000) in paragraph at lines 15652--15654 []\T1/ptm/m/n/10 This works via \T1/zi4/m/n/10 prettyNum()\T1/ptm/m/n/10 , whic h calls Underfull \hbox (badness 1215) in paragraph at lines 15652--15654 \T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero) \T1/ptm/m/n/10 three times in this case, see Underfull \hbox (badness 10000) in paragraph at lines 15674--15679 []\T1/ptm/m/n/10 For num-bers, \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 calls \T 1/zi4/m/n/10 prettyNum() \T1/ptm/m/n/10 when needed which it-self calls Underfull \hbox (badness 1558) in paragraph at lines 15674--15679 \T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero)\T1/ptm/m/n/10 . (\T1/ptm/m /it/10 ``when needed''\T1/ptm/m/n/10 : when \T1/zi4/m/n/10 zero.print \T1/ptm/m /n/10 is not Underfull \hbox (badness 10000) in paragraph at lines 15686--15690 []\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b ers on the dec-i-mal point, so Underfull \hbox (badness 2426) in paragraph at lines 15686--15690 \T1/zi4/m/n/10 formatC(c(6.11,13.1),digits = 2,format = "fg") \T1/ptm/m/n/10 gi ves \T1/zi4/m/n/10 c("6.1"," 13")\T1/ptm/m/n/10 . If you want [240] Underfull \hbox (badness 2035) in paragraph at lines 15725--15729 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt m/m/n/10 3.2.0: for use within [241] Underfull \vbox (badness 10000) has occurred while \output is active [242] [243] [244] [245] [246] [247] [248] [249] [250] Underfull \hbox (badness 2452) in paragraph at lines 16338--16342 []\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 16338--16342 \T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_ WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and [251] [252] Underfull \hbox (badness 1092) in paragraph at lines 16511--16516 [][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t he DLL has been loaded us-ing [253] [254] [255] [256] Underfull \hbox (badness 6741) in paragraph at lines 16764--16768 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \ T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10 , [257] [258] [259] [260] [261] [262] [263] [264] [265] [266] Underfull \vbox (badness 10000) has occurred while \output is active [267] [268] [269] [270] [271] [272] [273] [274] [275] [276] [277] Underfull \hbox (badness 1478) in paragraph at lines 18113--18116 []\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [278] [279] [280] [281] Underfull \hbox (badness 10000) in paragraph at lines 18381--18383 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww w . unicode . org / reports / tr35 / [282] [283] [284] [285] [286] [287] [288] [289] [290] Underfull \hbox (badness 1442) in paragraph at lines 18980--18982 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see [291] [292] [293] [294] [295] Underfull \hbox (badness 10000) in paragraph at lines 19311--19317 [296] [297] [298] [299] Underfull \hbox (badness 1248) in paragraph at lines 19556--19559 []\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n /10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/ m/n/10 , [300] [301] [302] [303] Underfull \hbox (badness 4739) in paragraph at lines 19819--19821 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [304] [305] [306] [307] Underfull \hbox (badness 1603) in paragraph at lines 20046--20049 []\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/zi4/m/n/10 https : / / w ww . netlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / www . [308] [309] [310] Underfull \hbox (badness 1596) in paragraph at lines 20273--20278 \T1/ptm/m/n/10 trix or, if \T1/zi4/m/n/10 simplify = "array"\T1/ptm/m/n/10 , an ar-ray if ap-pro-pri-ate, by ap-ply-ing \T1/zi4/m/n/10 simplify2array()\T1/ptm /m/n/10 . [311] [312] [313] [314] [315] [316] [317] [318] [319] [320] Underfull \hbox (badness 2469) in paragraph at lines 20878--20883 []\T1/ptm/m/n/10 In late 2017 a \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 in-stal-l a-tion was seen di-vided into two li-braries, \T1/zi4/m/n/10 libcurl \T1/ptm/m/ n/10 and [321] Underfull \hbox (badness 10000) in paragraph at lines 20972--20976 []\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory [322] [323] [324] Underfull \hbox (badness 1014) in paragraph at lines 21142--21147 []\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1 0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if [325] [326] [327] [328] [329] [330] [331] [332] [333] [334] [335] [336] [337] Underfull \hbox (badness 1264) in paragraph at lines 21991--21996 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [338] Underfull \hbox (badness 4441) in paragraph at lines 22020--22023 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory \T1/zi4/m/n/10 "LC_ALL" \T1/ptm/ m/n/10 sets only cat-e-gories \T1/zi4/m/n/10 "LC_COLLATE"\T1/ptm/m/n/10 , \T1/z i4/m/n/10 "LC_CTYPE"\T1/ptm/m/n/10 , [339] [340] [341] [342] [343] [344] [345] [346] [347] [348] [349] Underfull \hbox (badness 6047) in paragraph at lines 22794--22796 []\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n /10 has the prop-erty that \T1/zi4/m/n/10 make.unique(c(A,B)) == [350] [351] [352] [353] [354] [355] [356] [357] [358] [359] [360] [361] [362] [363] [364] [365] [366] [367] Underfull \hbox (badness 10000) in paragraph at lines 23874--23880 [][]$\T1/zi4/m/n/10 https : / / zlib . net/$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m /n/10 https : / / en . wikipedia . org / wiki / Gzip$[][]\T1/ptm/m/n/10 , [][]$ \T1/zi4/m/n/10 http : / / www . bzip . org/$[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 23874--23880 [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm /m/n/10 , [][]$\T1/zi4/m/n/10 https : / / tukaani . org / xz/$[][] \T1/ptm/m/n/ 10 and [][]$\T1/zi4/m/n/10 https : [368] [369] [370] [371] [372] [373] [374] Underfull \hbox (badness 2790) in paragraph at lines 24375--24378 []\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s ages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 24375--24378 \T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m es-sages, so can be sup-pressed by [375] [376] [377] [378] [379] Underfull \hbox (badness 1194) in paragraph at lines 24664--24667 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 . It calls [380] [381] [382] Underfull \hbox (badness 2368) in paragraph at lines 24871--24877 []\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 , \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond- ing list, i.e., Underfull \hbox (badness 4981) in paragraph at lines 24871--24877 \T1/zi4/m/n/10 names(as.list(env,all.names = TRUE)) \T1/ptm/m/n/10 which are al so given by [][]\T1/zi4/m/n/10 ls[][][](env,all.names = [383] [384] [385] [386] [387] [388] Underfull \hbox (badness 10000) in paragraph at lines 25256--25259 []\T1/ptm/m/n/10 optional [][]\T1/zi4/m/n/10 logical[][][] \T1/ptm/m/n/10 even- tu-ally to be passed to \T1/zi4/m/n/10 print()\T1/ptm/m/n/10 , used by [389] [390] [391] [392] [393] [394] [395] [396] [397] [398] Underfull \hbox (badness 10000) in paragraph at lines 25876--25878 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m ore ef-fi-cient than \T1/zi4/m/n/10 pkg %in% [399] [400] [401] [402] [403] [404] [405] [406] [407] [408] [409] [410] Underfull \hbox (badness 1038) in paragraph at lines 26737--26745 []\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/ 10 R \T1/ptm/m/n/10 starts up. Ini-tially Underfull \hbox (badness 1735) in paragraph at lines 26737--26745 \T1/ptm/m/n/10 set from value of the en-vi-ron-ment vari-able \T1/zi4/m/n/10 R_ DEFAULT_PACKAGES\T1/ptm/m/n/10 , or if that is un- Underfull \hbox (badness 1292) in paragraph at lines 26737--26745 \T1/ptm/m/n/10 set to \T1/zi4/m/n/10 c("datasets","utils","grDevices","graphics ","stats","methods")\T1/ptm/m/n/10 . (Set Underfull \hbox (badness 1881) in paragraph at lines 26746--26749 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are [411] Underfull \hbox (badness 6220) in paragraph at lines 26770--26772 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [412] Underfull \hbox (badness 2142) in paragraph at lines 26911--26915 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able [413] Underfull \hbox (badness 1968) in paragraph at lines 26968--26973 []\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able [414] [415] [416] Underfull \hbox (badness 10000) in paragraph at lines 27262--27268 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/ n/10 setRepositories[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 27262--27268 \T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "https://bioconductor.org"\T1/ ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 27262--27268 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de"\ T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 10000) in paragraph at lines 27275--27278 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][ ][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10 and [417] Underfull \hbox (badness 2689) in paragraph at lines 27301--27303 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see Underfull \hbox (badness 10000) in paragraph at lines 27336--27341 []\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/ 10 (and in-di-rectly Underfull \hbox (badness 2529) in paragraph at lines 27342--27353 \T1/ptm/m/n/10 in-di-rectly [][]\T1/zi4/m/n/10 update.packages[][][]\T1/ptm/m/n /10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si- Underfull \hbox (badness 2512) in paragraph at lines 27342--27353 \T1/ptm/m/n/10 ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi4/m /n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use and Underfull \hbox (badness 7203) in paragraph at lines 27354--27357 []\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/ n/10 and [418] [419] Underfull \vbox (badness 3803) has occurred while \output is active [420] [421] [422] [423] [424] [425] Underfull \hbox (badness 10000) in paragraph at lines 27901--27904 []\T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 str2lang(s ) \T1/ptm/m/n/10 re-turn spe-cial ver-sions of [426] Underfull \hbox (badness 7925) in paragraph at lines 27982--27986 []\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 vec-to r \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n /10 cor-re-sponds to Underfull \hbox (badness 1622) in paragraph at lines 27982--27986 [][]\T1/zi4/m/n/10 parse[][][](text = s,keep.source=FALSE)\T1/ptm/m/n/10 , whic h is al-ways of type ([][]\T1/zi4/m/n/10 typeof[][][]\T1/ptm/m/n/10 ) and [][]\ T1/zi4/m/n/10 class[][][] [427] Underfull \hbox (badness 6125) in paragraph at lines 27987--27996 []\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 string \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2lang(s) \T1/ptm/m/n/10 cor -re-sponds to [][]\T1/zi4/m/n/10 parse[][][](text = [428] [429] [430] [431] [432] [433] [434] [435] [436] [437] [438] [439] [440] [441] [442] Underfull \hbox (badness 2726) in paragraph at lines 28935--28938 []\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di -cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put, see [443] [444] [445] [446] [447] [448] [449] [450] [451] [452] [453] [454] Underfull \hbox (badness 1603) in paragraph at lines 29685--29688 []\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/zi4/m/n/10 https : / / w ww . netlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / www . [455] [456] [457] [458] [459] [460] [461] [462] [463] [464] [465] [466] [467] [468] [469] Underfull \hbox (badness 1533) in paragraph at lines 30713--30716 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [470] [471] [472] Underfull \hbox (badness 1163) in paragraph at lines 30876--30887 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\ T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [473] [474] [475] [476] [477] [478] [479] Underfull \vbox (badness 10000) has occurred while \output is active [480] [481] [482] [483] [484] [485] [486] [487] [488] [489] [490] [491] [492] [493] [494] [495] [496] [497] [498] Underfull \hbox (badness 10000) in paragraph at lines 32539--32543 []\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n /10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 32539--32543 \T1/zi4/m/n/10 "(?[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t he matches are also re-turned by name. Underfull \hbox (badness 3557) in paragraph at lines 32560--32562 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919799 / Underfull \hbox (badness 1122) in paragraph at lines 32563--32567 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 pcre2pattern \T1/ptm/m/n/10 or \T1/zi4/m/n/ 10 pcrepattern man \T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m/n/10 ht tps : / / www . pcre . org / [499] [500] Underfull \vbox (badness 10000) has occurred while \output is active [501] [502] [503] [504] [505] [506] [507] [508] Underfull \hbox (badness 1655) in paragraph at lines 33157--33159 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm /m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] [519] [520] [521] [522] [523] [524] [525] [526] Underfull \hbox (badness 2261) in paragraph at lines 34349--34354 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i t ap-plies to all fields; oth-er-wise, if [527] Underfull \hbox (badness 10000) in paragraph at lines 34376--34382 []\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac- ters Underfull \hbox (badness 1484) in paragraph at lines 34376--34382 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 \a,\b,\f,\n,\r,\t,\v\T1/ptm/m/n/10 ' and oc-tal and hex-adec-i-mal rep-re-sen-ta-tions like [528] [529] [530] [531] [532] [533] [534] [535] [536] [537] [538] [539] [540] [541] [542] [543] [544] [545] [546] [547] [548] [549] [550] [551] [552] [553] [554] [555] [556] [557] [558] [559] [560] [561] [562] [563] [564] [565] [566] [567] Underfull \hbox (badness 10000) in paragraph at lines 36987--36989 [][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919 799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for [568] Underfull \vbox (badness 10000) has occurred while \output is active [569] [570] [571] [572] [573] [574] [575] [576] Underfull \hbox (badness 1072) in paragraph at lines 37584--37588 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 37589--37593 []\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/ 10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 - -no-init-file\T1/ptm/m/n/10 ', [577] Underfull \hbox (badness 10000) in paragraph at lines 37619--37625 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 37619--37625 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 37619--37625 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in Underfull \hbox (badness 3009) in paragraph at lines 37634--37641 []\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt m/m/n/10 ' which is read Underfull \hbox (badness 1038) in paragraph at lines 37634--37641 \T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron- ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 37634--37641 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 37634--37641 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [578] [579] [580] Underfull \hbox (badness 2644) in paragraph at lines 37866--37870 []\T1/ptm/m/n/10 alternative to \T1/zi4/m/n/10 exprs \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 ...\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an [581] [582] [583] Underfull \hbox (badness 1142) in paragraph at lines 38018--38024 []\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form at \T1/ptm/m/n/10 meth-ods is \T1/zi4/m/n/10 "%Y-%m-%d [584] [585] [586] [587] [588] [589] [590] [591] [592] [593] [594] [595] [596] [597] [598] [599] [600] [601] [602] [603] Underfull \hbox (badness 1565) in paragraph at lines 39297--39299 []\T1/ptm/m/n/10 integer code used in \T1/zi4/m/n/10 quantile(*,type=quantile.t ype) \T1/ptm/m/n/10 for the de-fault [604] [605] [606] [607] [608] [609] [610] [611] [612] [613] Underfull \hbox (badness 1137) in paragraph at lines 39887--39893 []\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild -cards in file paths. For pre-cise de-tails Underfull \hbox (badness 4967) in paragraph at lines 39906--39911 []\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi s may need to be matched ex-plic-itly: for ex-am-ple [614] [615] Underfull \hbox (badness 1616) in paragraph at lines 40026--40031 \T1/zi4/m/n/10 system("id") \T1/ptm/m/n/10 is much more portable on Unix-alikes , pro-vided only the POSIX op-tions [616] [617] [618] [619] [620] [621] [622] [623] [624] Underfull \hbox (badness 1472) in paragraph at lines 40568--40571 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee p their source in-clud-ing com-ments, see [625] [626] [627] [628] [629] [630] [631] [632] [633] [634] [635] [636] [637] Underfull \vbox (badness 3803) has occurred while \output is active [638] Underfull \hbox (badness 10000) in paragraph at lines 41487--41491 []\T1/ptm/m/n/10 On 64-bit plat-forms \T1/zi4/m/n/10 bin \T1/ptm/m/n/10 can hav e $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., \T1/zi4/m/n/10 length(bin) > [639] [640] [641] [642] Underfull \hbox (badness 10000) in paragraph at lines 41738--41741 [][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [ ][]$https : / / developer . r-[]project . org / [643] [644] [645] Underfull \hbox (badness 10000) in paragraph at lines 41922--41926 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[ ][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer . [646] [647] [648] [649] [650] [651] [652] [653] [654] Underfull \hbox (badness 10000) in paragraph at lines 42547--42550 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / data . iana . org / time-[ ]zones / [655] [656] [657] [658] [659] [660] Underfull \vbox (badness 10000) has occurred while \output is active [661] [662] [663] [664] [665] [666] [667] [668] Underfull \hbox (badness 1990) in paragraph at lines 43469--43477 []\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e r-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 43469--43477 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less [669] [670] [671] [672] [673] [674] [675] [676] Underfull \hbox (badness 1917) in paragraph at lines 43975--43982 []\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/ ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute [677] [678] [679] [680] [681] [682] [683] Underfull \hbox (badness 2452) in paragraph at lines 44428--44434 [][][]\T1/zi4/m/n/10 file[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.access[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.append[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 file.copy[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.create[] [][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.exists[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [684] [685] [686] [687] [688] [689] Underfull \hbox (badness 3668) in paragraph at lines 44802--44804 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di- ately, even if [690] [691] Underfull \hbox (badness 2401) in paragraph at lines 44932--44936 []\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [692] [693] [694] Underfull \hbox (badness 2111) in paragraph at lines 45139--45144 \T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n ot empty, these are used as col-umn names. Underfull \hbox (badness 10000) in paragraph at lines 45160--45165 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m /n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is [695] [696] [697] [698] Underfull \hbox (badness 4001) in paragraph at lines 45385--45387 []\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/n/10 https : / / developer . [699] [700] [701] [702] [703] Underfull \hbox (badness 5417) in paragraph at lines 45750--45754 []\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [704] Underfull \hbox (badness 10000) in paragraph at lines 45811--45815 []\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard ' reg-exps, in-clud-ing el-e-ments named [705] [706]) (./compiler-pkg.tex Chapter 2. [707] [708] [709] [710]) (./datasets-pkg.tex Chapter 3. [711] [712] [713] [714] [715] [716] [717] [718] [719] [720] [721] [722] [723] [724] [725] [726] [727] Underfull \hbox (badness 1097) in paragraph at lines 1037--1041 []\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th e iden-ti-fi-ca-tion of crim-i-nals. [728] [729] [730] [731] [732] [733] [734] [735] [736] [737] [738] [739] [740] [741] [742] [743] [744] [745] [746] [747] [748] [749] [750] [751] [752] [753] [754] [755] [756] [757] [758] [759] [760] [761] [762] [763] [764] [765] [766] [767] [768] [769] [770] [771] [772] [773] [774] [775] [776] [777] [778] [779] [780] [781] [782] [783] [784] [785] [786] [787] [788] [789] [790] [791] [792] [793]) (./grDevices-pkg.tex [794] Chapter 4. [795] [796] [797] [798] [799] Underfull \hbox (badness 3158) in paragraph at lines 282--286 []\T1/ptm/m/n/10 numeric vec-tor of length 3, \T1/zi4/m/n/10 c(mi,ma,n.)\T1/ptm /m/n/10 , with iden-ti-cal mean-ing to Underfull \hbox (badness 10000) in paragraph at lines 298--303 []\T1/ptm/m/n/10 Apart from that, [][]\T1/zi4/m/n/10 axisTicks[][][]() \T1/ptm/ m/n/10 just calls the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/ptm/m/n/1 0 in Underfull \hbox (badness 1852) in paragraph at lines 298--303 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 /src/main/plot.c\T1/ptm/m/n/10 ' which is also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack-age func-t ion [800] [801] [802] [803] [804] [805] [806] [807] [808] [809] Underfull \hbox (badness 1424) in paragraph at lines 898--900 [][][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) and \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 mean trans-par-ent, which can also be spec-i -fied as [810] [811] [812] [813] Underfull \hbox (badness 5175) in paragraph at lines 1192--1194 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [814] [815] Underfull \hbox (badness 2512) in paragraph at lines 1311--1313 []\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/n/10 https : / / web . arc hive . org / web / 20190613001950 / http : / / efg2 . com / [816] [817] Underfull \hbox (badness 1852) in paragraph at lines 1405--1408 []\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col- ors that will be used in plot-ting, call-ing [818] [819] [820] Underfull \hbox (badness 1490) in paragraph at lines 1611--1616 \T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\ T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/ 10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and [821] [822] [823] [824] [825] [826] Underfull \hbox (badness 1325) in paragraph at lines 2017--2027 \T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/ 10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1 /ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 , [827] [828] Underfull \hbox (badness 10000) in paragraph at lines 2129--2131 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [829] [830] [831] Underfull \hbox (badness 6758) in paragraph at lines 2308--2311 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [832] [833] [834] [835] [836] [837] [838] [839] [840] [841] Underfull \hbox (badness 10000) in paragraph at lines 2919--2920 [842] [843] [844] [845] [846] [847] [848] [849] [850] Underfull \hbox (badness 10000) in paragraph at lines 3493--3498 []\T1/zi4/m/n/10 nclass.FD \T1/ptm/m/n/10 uses the Freedman-Diaconis choice bas ed on the inter-quartile range [851] [852] [853] Underfull \vbox (badness 3803) has occurred while \output is active [854] [855] [856] [857] Underfull \vbox (badness 3803) has occurred while \output is active [858] Underfull \hbox (badness 10000) in paragraph at lines 3992--3995 []\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv e a C in-te-ger for-mat such as [859] [860] [861] [862] [863] [864] [865] [866] [867] [868] [869] Underfull \hbox (badness 10000) in paragraph at lines 4732--4737 [][][]$\T1/zi4/m/n/10 https : / / www . adobe . com / content / dam / acom / en / devnet / actionscript / articles / PLRM . pdf$[][] Underfull \hbox (badness 10000) in paragraph at lines 4732--4737 \T1/ptm/m/n/10 or PDF [][]$\T1/zi4/m/n/10 https : / / www . adobe . com / conte nt / dam / acom / en / devnet / acrobat / pdfs / pdf _ Underfull \hbox (badness 1881) in paragraph at lines 4732--4737 \T1/zi4/m/n/10 reference _ 1-[]7 . pdf$[][] \T1/ptm/m/n/10 and in dec-i-mal, oc -tal and hex at [][]$\T1/zi4/m/n/10 https : / / www . stat . auckland . ac . [870] [871] [872] Underfull \hbox (badness 1584) in paragraph at lines 4888--4890 []\T1/ptm/m/n/10 For type \T1/zi4/m/n/10 "cairo"\T1/ptm/m/n/10 , the \T1/zi4/m/ n/10 symbolfamily \T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See Underfull \hbox (badness 1067) in paragraph at lines 4892--4899 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [873] [874] [875] [876] Underfull \hbox (badness 1377) in paragraph at lines 5198--5203 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [877] Underfull \hbox (badness 1418) in paragraph at lines 5274--5281 \T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4 /m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/ zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm /m/n/10 , [878] Underfull \hbox (badness 1755) in paragraph at lines 5292--5294 []\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East Asian lan-guages -- see [879] Underfull \hbox (badness 1377) in paragraph at lines 5403--5408 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \ T1/zi4/m/n/10 "rgb" \T1/ptm/m/n/10 (which is RGB+gray) and [880] Underfull \hbox (badness 7344) in paragraph at lines 5472--5474 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [881] Underfull \vbox (badness 3803) has occurred while \output is active [882] Underfull \hbox (badness 2035) in paragraph at lines 5610--5619 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5610--5619 \T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/ n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 5610--5619 \T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 , [883] [884] Underfull \hbox (badness 10000) in paragraph at lines 5678--5680 []\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4 /m/n/10 https : / / ftp . gnu . org / pub / non-[]gnu / [885] [886] Underfull \hbox (badness 1546) in paragraph at lines 5820--5828 []\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T 1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/ n/10 , [887] [888] [889] [890] [891] [892] [893] [894] Underfull \hbox (badness 10000) in paragraph at lines 6358--6361 []\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red /green/blue) into HSV space [895] [896] Underfull \vbox (badness 3803) has occurred while \output is active [897] [898] [899] [900] [901] [902] [903] [904] [905] [906] [907] [908] Underfull \hbox (badness 1189) in paragraph at lines 7184--7186 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [909] Underfull \hbox (badness 10000) in paragraph at lines 7289--7291 []\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK lan-guages and [910] [911] [912] [913] [914] Underfull \hbox (badness 3780) in paragraph at lines 7603--7609 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1 0 "AvantGarde"\T1/ptm/m/n/10 , [915] [916] [917] Underfull \hbox (badness 2680) in paragraph at lines 7805--7807 []\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of [918] [919] [920]) (./graphics-pkg.tex Chapter 5. [921] [922] [923] [924] [925] [926] [927] [928] [929] [930] [931] [932] [933] [934] [935] [936] Overfull \hbox (12.71341pt too wide) in paragraph at lines 981--981 [] \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = " # {passengers}", legend.text = TRUE)[] [937] [938] [939] [940] [941] [942] Underfull \hbox (badness 4634) in paragraph at lines 1355--1358 [][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n /10 , [943] [944] [945] [946] [947] [948] [949] [950] [951] [952] [953] [954] [955] [956] [957] [958] [959] Underfull \hbox (badness 1728) in paragraph at lines 2333--2335 []\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use \T1/zi4/m/n/10 "n " \T1/ptm/m/n/10 to sup-press and see also [960] Underfull \hbox (badness 1009) in paragraph at lines 2426--2433 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [961] [962] [963] [964] [965] [966] [967] [968] [969] [970] [971] [972] [973] [974] [975] [976] [977] [978] [979] [980] [981] [982] Underfull \vbox (badness 10000) has occurred while \output is active [983] Underfull \vbox (badness 10000) has occurred while \output is active [984] [985] [986] [987] [988] [989] [990] [991] [992] [993] [994] [995] Underfull \hbox (badness 3229) in paragraph at lines 4602--4607 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used, see [996] [997] [998] [999] [1000] Underfull \hbox (badness 10000) in paragraph at lines 5032--5038 []\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n /10 (width,height) \T1/ptm/m/n/10 in user co-or-di-nate units. Underfull \hbox (badness 5908) in paragraph at lines 5032--5038 \T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin" ) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that [1001] [1002] Underfull \hbox (badness 10000) in paragraph at lines 5163--5166 [1003 >/library/graphics/help/figures//mai.pdf >] Underfull \hbox (badness 10000) in paragraph at lines 5224--5226 Underfull \vbox (badness 10000) has occurred while \output is active [1004] [1005 >/library/graphics/help/figures//oma.pdf >] [1006] Underfull \hbox (badness 10000) in paragraph at lines 5414--5416 []\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2 :6\T1/ptm/m/n/10 ) cor-re-spond to [1007] Underfull \vbox (badness 3803) has occurred while \output is active [1008] [1009] [1010] [1011] [1012] [1013] [1014]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.plot}) has been already used, duplicate ignored \relax l.5896 \aliasA{plot}{plot.default}{plot} [1015] [1016] [1017] [1018] [1019] [1020] [1021] [1022] [1023] [1024] [1025] [1026] [1027] [1028] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6801--6802 [][] [1029 >/library/graphics/help/figures//pch.pdf >] [1030] Underfull \vbox (badness 3803) has occurred while \output is active [1031] [1032] [1033] [1034] [1035] [1036] [1037] [1038] [1039] [1040] [1041] [1042] Underfull \hbox (badness 2012) in paragraph at lines 7623--7626 []\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d rawn be-tween the point \T1/zi4/m/n/10 (x0[i],y0[i]) \T1/ptm/m/n/10 and the poi nt [1043] [1044] [1045] [1046] [1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] [1055] [1056] [1057] [1058] [1059] [1060] [1061] [1062] [1063] Underfull \hbox (badness 10000) in paragraph at lines 8889--8891 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color Underfull \hbox (badness 10000) in paragraph at lines 8891--8893 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color [1064]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.uni ts}) has been already used, duplicate ignored \relax l.8971 \HeaderA{units}{Graphical Units}{units} [1065] [1066] [1067] [1068]) (./grid-pkg.tex Chapter 6. [1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] Underfull \hbox (badness 2680) in paragraph at lines 486--489 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1 /zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio n of [1077] [1078] [1079] [1080] [1081] [1082] [1083] [1084] [1085] [1086] [1087] Underfull \hbox (badness 4279) in paragraph at lines 1112--1121 [][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m /n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 unit[][][]\T1/ptm/m/n/10 , [1088] [1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100] [1101] [1102] [1103] [1104] [1105] [1106] [1107] [1108] [1109] [1110] [1111] [1112] [1113] [1114] [1115] [1116] [1117] [1118] [1119] [1120] [1121] [1122] [1123] [1124] [1125] [1126] [1127] [1128] [1129] [1130] [1131] [1132] [1133] [1134] [1135] [1136] [1137] [1138] [1139] [1140] [1141] [1142] [1143] [1144] [1145] [1146] Underfull \hbox (badness 1067) in paragraph at lines 4537--4540 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1147] [1148] [1149] [1150] Underfull \hbox (badness 7256) in paragraph at lines 4782--4784 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1151] [1152] [1153] [1154] [1155] [1156] [1157] [1158] [1159] [1160] [1161] [1162] [1163] [1164] [1165] [1166] [1167] [1168] [1169] [1170] [1171] [1172] [1173] [1174] [1175] [1176] [1177] [1178] [1179] [1180] [1181] [1182] [1183] [1184] Underfull \hbox (badness 1824) in paragraph at lines 6753--6756 []\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by do-ing some-thing like \T1/zi4/m/n/10 depth [1185] [1186] [1187] [1188]) (./methods-pkg.tex Chapter 7. [1189] [1190] [1191] [1192] [1193] [1194] [1195] [1196] Underfull \vbox (badness 10000) has occurred while \output is active [1197] Underfull \vbox (badness 10000) has occurred while \output is active [1198] [1199] [1200] [1201] [1202] [1203] [1204] [1205] [1206] [1207] Underfull \hbox (badness 2237) in paragraph at lines 1385--1387 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \ T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package "\T1/ptm/m/n/10 , also of class [1208] [1209] [1210] [1211] [1212] [1213] [1214] [1215] Underfull \hbox (badness 2181) in paragraph at lines 1932--1939 []\T1/ptm/m/n/10 Two vir-tual classes are sup-plied to test for ref-er-ence ob- jects: \T1/zi4/m/n/10 is(x,"refClass") \T1/ptm/m/n/10 tests [1216] Underfull \hbox (badness 10000) in paragraph at lines 1981--1986 []\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c an be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1981--1986 \T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1 0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the [1217] [1218] [1219] Underfull \hbox (badness 2213) in paragraph at lines 2214--2219 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use \T1/zi4/m/n/10 where = [1220] [1221] [1222] [1223] [1224] Underfull \hbox (badness 10000) in paragraph at lines 2574--2577 []\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o b-jects of class [1225] [1226] Underfull \hbox (badness 1132) in paragraph at lines 2714--2718 []\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1 0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re -turned re-sult is in [1227] Underfull \hbox (badness 1033) in paragraph at lines 2746--2751 \T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store s the [1228] [1229] [1230] [1231] [1232] [1233] [1234] Underfull \hbox (badness 1102) in paragraph at lines 3303--3305 []\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na me of the pack-age (with-out the ex-tra-ne-ous [1235] [1236] [1237] [1238] [1239] Underfull \hbox (badness 10000) in paragraph at lines 3634--3639 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these classes takes spe-cial ar-gu-ments [1240] Underfull \hbox (badness 10000) in paragraph at lines 3642--3651 []\T1/ptm/m/n/10 The [1241] Underfull \hbox (badness 10000) in paragraph at lines 3762--3763 [] \T1/zi4/m/n/10 Pos <-setClass("Pos",slots = c(latitude = "numeric",longitude = "numeric",altitude [1242] [1243] [1244] [1245] [1246] [1247] [1248] [1249] [1250] [1251] [1252] Underfull \hbox (badness 1769) in paragraph at lines 4472--4478 []\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4472--4478 \T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T 1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by [1253] [1254] [1255] [1256] [1257] [1258] [1259] [1260] [1261] [1262] Underfull \vbox (badness 10000) has occurred while \output is active [1263] [1264] [1265] Underfull \hbox (badness 4036) in paragraph at lines 5437--5440 []\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10 the method to use in re-sponse to a [1266] Underfull \hbox (badness 3803) in paragraph at lines 5512--5514 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1267] [1268] [1269] [1270] Underfull \hbox (badness 1087) in paragraph at lines 5744--5749 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] Underfull \hbox (badness 1675) in paragraph at lines 6451--6457 \T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1279] [1280] [1281] [1282] Underfull \vbox (badness 10000) has occurred while \output is active [1283] [1284] [1285] [1286]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has been already used, duplicate ignored \relax l.6973 \aliasA{S4}{S3Part}{S4} [1287] [1288] [1289]pdfTeX warning (ext4): desti nation with the same identifier (name{Rfn.Complex}) has been already used, dupl icate ignored \relax l.7229 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate ignored \relax l.7231 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) has been already used, duplicate igno red \relax l.7232 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination wi th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7234 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor ed \relax l.7235 \aliasA{Summary}{S4groupGeneric}{Summary} [1290] Underfull \hbox (badness 2050) in paragraph at lines 7296--7300 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1291] [1292] [1293] Underfull \hbox (badness 1286) in paragraph at lines 7484--7486 []\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal ly [1294] [1295] [1296] [1297] [1298] [1299] [1300] [1301] [1302] [1303] [1304] [1305] [1306] [1307] [1308] [1309] [1310] [1311] [1312] [1313] [1314] [1315] [1316] [1317] [1318] [1319] [1320] Underfull \vbox (badness 10000) has occurred while \output is active [1321] [1322] [1323] [1324] [1325] [1326] [1327] [1328] Underfull \hbox (badness 1137) in paragraph at lines 10011--10019 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/n/10 ne w("signature",functionDef,...)\T1/ptm/m/n/10 . The [1329] [1330] [1331] [1332] [1333] [1334] [1335] Underfull \hbox (badness 1852) in paragraph at lines 10564--10568 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1336] [1337] [1338] [1339]) (./parallel-pkg.tex [1340] Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4 /m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[ ][][]: see [1341] [1342] [1343] [1344] [1345] Underfull \hbox (badness 1320) in paragraph at lines 300--303 []\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, So-laris and Win-dows. [1346] [1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355] [1356] [1357] [1358] [1359] [1360] [1361] [1362] Underfull \hbox (badness 3386) in paragraph at lines 1401--1404 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R andom.seed \T1/ptm/m/n/10 when the [1363] [1364] [1365]) (./splines-pkg.tex [1366] Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] [1377] [1378] [1379] [1380] [1381] [1382]) (./stats-pkg.tex Chapter 10. [1383] [1384] [1385] [1386] [1387] [1388] [1389] [1390] [1391] [1392] [1393] [1394] [1395] [1396] Underfull \hbox (badness 1412) in paragraph at lines 882--884 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm \T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for [1397] [1398] [1399] [1400] [1401] [1402] [1403] [1404] Underfull \hbox (badness 2503) in paragraph at lines 1364--1367 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1405] [1406] [1407] Underfull \hbox (badness 10000) in paragraph at lines 1544--1548 []\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov","lm") \T1/ptm/m/n/1 0 or for mul-ti-ple re-sponses of class [1408] [1409] [1410] [1411] [1412] [1413] [1414] [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] [1423] [1424] [1425] [1426] [1427] [1428] [1429] [1430] [1431] [1432] [1433] [1434] [1435] [1436] [1437] [1438] Underfull \hbox (badness 2503) in paragraph at lines 3514--3517 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1439] [1440] [1441] [1442] [1443] [1444] [1445] [1446] [1447] [1448] [1449] [1450] [1451] [1452] [1453] Underfull \hbox (badness 1127) in paragraph at lines 4430--4433 []\T1/ptm/m/n/10 standardized resid-u-als, \T1/zi4/m/n/10 (observed -expected) / sqrt(V)\T1/ptm/m/n/10 , where \T1/zi4/m/n/10 V \T1/ptm/m/n/10 is the [1454] [1455] [1456] [1457] [1458] Underfull \hbox (badness 3989) in paragraph at lines 4770--4777 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468] Underfull \hbox (badness 2556) in paragraph at lines 5406--5409 []\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/ ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p tm/m/n/10 . For Underfull \hbox (badness 2932) in paragraph at lines 5423--5425 []\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se- quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is given by [1469] [1470] [1471] [1472] [1473] [1474] [1475] Underfull \hbox (badness 2503) in paragraph at lines 5820--5824 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1476] [1477] [1478] [1479] [1480] [1481] [1482] [1483] [1484] [1485] [1486] [1487] [1488] Underfull \hbox (badness 7081) in paragraph at lines 6614--6617 []\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 10000) in paragraph at lines 6618--6620 []\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also [1489] [1490] [1491] [1492] [1493] Underfull \vbox (badness 3803) has occurred while \output is active [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] Underfull \hbox (badness 10000) in paragraph at lines 7465--7468 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T 1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the [1502] [1503] [1504] [1505] [1506] [1507] [1508] [1509] [1510] [1511] [1512] [1513] [1514] [1515] [1516] [1517] [1518] [1519] [1520] [1521] [1522] [1523] Underfull \vbox (badness 10000) has occurred while \output is active [1524] [1525] [1526] [1527] [1528] Underfull \hbox (badness 2626) in paragraph at lines 9144--9147 []\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1529] [1530] Underfull \hbox (badness 2503) in paragraph at lines 9251--9255 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1531] [1532] [1533] [1534] [1535] [1536] [1537] [1538] [1539] [1540] [1541] [1542] [1543] [1544] [1545] [1546] [1547] [1548] [1549] [1550] Underfull \hbox (badness 4518) in paragraph at lines 10587--10592 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1551] [1552] [1553] [1554] [1555] Underfull \hbox (badness 2142) in paragraph at lines 10948--10951 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ [1556] Underfull \hbox (badness 1253) in paragraph at lines 10967--10970 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][ ]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it- er-a-tion. Hence, [1557] Underfull \hbox (badness 1708) in paragraph at lines 11029--11033 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1558] [1559] [1560] [1561] [1562] [1563] Underfull \hbox (badness 1694) in paragraph at lines 11425--11428 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1564] [1565] [1566] [1567] [1568] [1569] [1570] [1571]pdfTeX warning (ext4): d estination with the same identifier (name{Rfn.hat}) has been already used, dupl icate ignored \relax l.11909 \aliasA{hat}{influence.measures}{hat} [1572] [1573] Underfull \hbox (badness 1484) in paragraph at lines 12051--12053 []\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1574] [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] Underfull \hbox (badness 10000) in paragraph at lines 12650--12652 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa ult[][][] \T1/ptm/m/n/10 when \T1/zi4/m/n/10 SSinit = [1584] [1585] [1586] [1587] [1588] [1589] Underfull \hbox (badness 2894) in paragraph at lines 12986--12990 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1590] [1591] [1592] [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601] Underfull \hbox (badness 4518) in paragraph at lines 13737--13742 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1602] [1603] [1604] [1605] [1606] [1607] [1608] [1609] [1610] Underfull \hbox (badness 4518) in paragraph at lines 14390--14395 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1611] [1612] [1613] Underfull \hbox (badness 8151) in paragraph at lines 14528--14532 []\T1/ptm/m/n/10 Only for the (de-fault) case \T1/zi4/m/n/10 (surface = "interp olate",statistics = Underfull \hbox (badness 1199) in paragraph at lines 14535--14537 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if \T1/zi4/m/n/10 family \T1/ptm/m/n/10 is [1614] [1615] [1616] [1617] [1618] [1619] [1620] [1621] [1622] [1623] [1624] [1625] [1626] [1627] [1628] [1629] [1630] [1631] Underfull \hbox (badness 2503) in paragraph at lines 15611--15615 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1632] [1633] [1634] [1635] [1636] [1637] [1638] [1639] Underfull \hbox (badness 10000) in paragraph at lines 16124--16130 []\T1/zi4/m/n/10 model.extract(m,"offset") \T1/ptm/m/n/10 and \T1/zi4/m/n/10 mo del.extract(m,"response") \T1/ptm/m/n/10 are equiv-a-lent to Underfull \hbox (badness 1867) in paragraph at lines 16124--16130 \T1/zi4/m/n/10 model.offset(m) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response (m) \T1/ptm/m/n/10 re-spec-tively. \T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 s ums any terms [1640] [1641] [1642] [1643] [1644] [1645] [1646] [1647] [1648] [1649] [1650] [1651] [1652] [1653] [1654] [1655] [1656] [1657] [1658] [1659] [1660] [1661] [1662] [1663] [1664] [1665] Underfull \hbox (badness 1158) in paragraph at lines 17767--17770 []\T1/ptm/m/n/10 the ex-pres-sion that was passed to \T1/zi4/m/n/10 nls \T1/ptm /m/n/10 as the data ar-gu-ment. The ac- [1666] [1667] Underfull \vbox (badness 3803) has occurred while \output is active [1668] Underfull \vbox (badness 10000) has occurred while \output is active [1669] Underfull \vbox (badness 10000) has occurred while \output is active [1670] [1671] [1672] [1673] [1674] [1675] [1676] [1677] [1678] [1679] [1680] [1681] [1682] [1683] Underfull \hbox (badness 1377) in paragraph at lines 18790--18795 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 18795--18798 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 2343) in paragraph at lines 18808--18812 []\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i t is un-able to re-duce Underfull \hbox (badness 3471) in paragraph at lines 18808--18812 \T1/ptm/m/n/10 the value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + re ltol) \T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 18816--18820 []\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \ T1/ptm/m/n/10 meth-ods if [1684] [1685] [1686] Underfull \vbox (badness 10000) has occurred while \output is active [1687] Overfull \hbox (15.73795pt too wide) in paragraph at lines 19041--19041 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Overfull \hbox (3.75941pt too wide) in paragraph at lines 19044--19044 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1688] [1689] [1690] [1691] [1692] [1693] [1694] Underfull \hbox (badness 1337) in paragraph at lines 19503--19506 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1695] [1696] [1697] [1698] [1699] [1700] [1701] [1702] [1703] Underfull \hbox (badness 3049) in paragraph at lines 20001--20005 []\T1/ptm/m/n/10 In the Cook's dis-tance vs leverage/(1-leverage) plot, con-tou rs of stan-dard-ized resid-u-als [1704] [1705] [1706] [1707] Underfull \hbox (badness 1194) in paragraph at lines 20264--20267 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1708] [1709] [1710] [1711] [1712] [1713] [1714] Underfull \hbox (badness 2503) in paragraph at lines 20643--20646 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , Underfull \hbox (badness 3919) in paragraph at lines 20670--20672 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1 /ptm/m/n/10 or \T1/zi4/m/n/10 "Comparison of Poisson [1715] [1716] [1717] [1718] [1719] [1720] [1721] [1722] [1723] [1724] [1725] [1726] [1727] [1728] [1729] [1730] [1731] [1732] Underfull \hbox (badness 10000) in paragraph at lines 21748--21754 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][ ][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 , [1733] [1734] [1735] [1736] [1737] [1738] [1739] [1740] [1741] [1742] [1743] [1744] [1745] [1746] [1747] [1748] [1749] [1750] [1751] [1752] [1753] [1754] [1755] Underfull \hbox (badness 1337) in paragraph at lines 23105--23111 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1756] [1757] [1758] [1759] [1760] [1761] [1762] Underfull \hbox (badness 3780) in paragraph at lines 23530--23533 []\T1/ptm/m/n/10 used only when \T1/zi4/m/n/10 names \T1/ptm/m/n/10 is true: th e pre-ci-sion to use when for-mat- Underfull \hbox (badness 1152) in paragraph at lines 23530--23533 \T1/ptm/m/n/10 ting the per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-s ions up to 4.0.x, this had been set to [1763] Underfull \hbox (badness 10000) in paragraph at lines 23671--23672 []\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . or g / wiki / Quantile # Estimating _ quantiles _ from _ a _ [1764] [1765] [1766] [1767] [1768] Underfull \hbox (badness 10000) in paragraph at lines 23955--23958 []\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by Underfull \hbox (badness 4205) in paragraph at lines 23955--23958 \T1/zi4/m/n/10 cutree(hclust.obj,k = k)\T1/ptm/m/n/10 , can be spec-i-fied for ef-fi-ciency if al-ready [1769] [1770] [1771] [1772] [1773] [1774] [1775] [1776] [1777] [1778] [1779] Underfull \hbox (badness 1824) in paragraph at lines 24632--24638 []\T1/ptm/m/n/10 Here, all the NAs in \T1/zi4/m/n/10 x \T1/ptm/m/n/10 are first re-placed by al-ter- Underfull \hbox (badness 1033) in paragraph at lines 24632--24638 \T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/ m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where [1780] Underfull \hbox (badness 10000) in paragraph at lines 24653--24656 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run med(x,k) \T1/ptm/m/n/10 sim-ply has \T1/zi4/m/n/10 y[j] = Underfull \hbox (badness 3690) in paragraph at lines 24722--24726 [][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's end point rule and is called by de-fault from [1781] Underfull \vbox (badness 3803) has occurred while \output is active [1782] [1783] [1784] [1785] [1786] [1787] [1788] [1789] Underfull \hbox (badness 2165) in paragraph at lines 25234--25239 []\T1/ptm/m/n/10 Each of the fol-low-ing are \T1/zi4/m/n/10 "selfStart" \T1/ptm /m/n/10 mod-els (with ex-am-ples) [][]\T1/zi4/m/n/10 SSasymp[][][]\T1/ptm/m/n/1 0 , [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [1790] [1791] [1792] [1793] Underfull \hbox (badness 1867) in paragraph at lines 25439--25441 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 25454--25458 []\T1/ptm/m/n/10 where \T1/zi4/m/n/10 NN <-[][]nobs[][][](object,use.fallback = use.fallback) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 PP [1794] [1795] [1796] [1797] [1798] [1799] [1800] [1801] [1802] [1803] [1804] [1805] [1806] [1807] [1808] [1809] [1810] [1811] [1812] [1813] [1814] [1815] [1816] [1817] Underfull \vbox (badness 10000) has occurred while \output is active [1818] Underfull \hbox (badness 3514) in paragraph at lines 27017--27022 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1819] [1820] [1821] [1822] Overfull \hbox (2.23795pt too wide) in paragraph at lines 27251--27251 [] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] [1823] Underfull \hbox (badness 3514) in paragraph at lines 27287--27293 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1824] Overfull \hbox (20.23795pt too wide) in paragraph at lines 27344--27344 []\T1/zi4/m/n/9 fmX1 <- nls(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), data = d atN, control = list(scaleOffset=1))[] Overfull \hbox (11.22874pt too wide) in paragraph at lines 27346--27346 [] \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=1 e-11, nDcentral=TRUE), trace=TRUE)[] [1825] [1826] [1827] Underfull \hbox (badness 3514) in paragraph at lines 27520--27525 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1828] [1829] Underfull \hbox (badness 3514) in paragraph at lines 27607--27612 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1830] Underfull \hbox (badness 3514) in paragraph at lines 27672--27677 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1831] [1832] Underfull \hbox (badness 3514) in paragraph at lines 27766--27771 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1833] Underfull \hbox (badness 6691) in paragraph at lines 27858--27863 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p tm/m/n/10 . It is the value of the ex-pres-sion [1834] [1835] [1836] [1837] [1838] [1839] [1840] [1841] Underfull \hbox (badness 4024) in paragraph at lines 28349--28352 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion , which [1842] [1843] [1844] [1845] [1846] [1847] [1848] [1849] [1850] [1851] Underfull \hbox (badness 5431) in paragraph at lines 28955--28957 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1852] [1853] [1854] [1855] Underfull \hbox (badness 5431) in paragraph at lines 29165--29168 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1856] [1857] [1858] [1859] [1860] Underfull \hbox (badness 1337) in paragraph at lines 29480--29484 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1861] [1862] [1863] [1864] [1865] Underfull \hbox (badness 1616) in paragraph at lines 29792--29795 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1866] [1867] [1868] [1869] [1870] [1871] [1872] [1873] [1874] [1875] [1876] [1877] [1878] [1879] [1880] [1881] [1882] [1883] [1884] Underfull \hbox (badness 3557) in paragraph at lines 30927--30931 []\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect \T1/zi4 /m/n/10 interval = [1885] [1886] [1887] Underfull \vbox (badness 10000) has occurred while \output is active [1888] [1889] [1890] Underfull \hbox (badness 1337) in paragraph at lines 31291--31295 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1891] [1892] [1893] [1894] [1895] [1896] [1897] [1898] [1899] Underfull \hbox (badness 1337) in paragraph at lines 31820--31824 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of Underfull \hbox (badness 10000) in paragraph at lines 31834--31836 []\T1/ptm/m/n/10 (when \T1/zi4/m/n/10 conf.int \T1/ptm/m/n/10 is true:) a pos-i -tive nu-meric tol-er-ance, used in [1900] [1901] [1902] Overfull \hbox (0.71648pt too wide) in paragraph at lines 32027--32027 []\T1/zi4/m/n/9 wilcox.test( 4:2, 3:1, paired=TRUE) # Warning: canno t compute exact p-value with ties[] [1903] [1904] [1905] Overfull \hbox (19.71954pt too wide) in paragraph at lines 32188--32188 [] \T1/zi4/m/n/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.eps = getOption("ts.eps"), ...)[] [1906] [1907] [1908] [1909] [1910]) (./stats4-pkg.tex Chapter 11. [1911] [1912] [1913] Underfull \vbox (badness 10000) has occurred while \output is active [1914] Underfull \vbox (badness 10000) has occurred while \output is active [1915] [1916] [1917] [1918]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.show.Rdash.methods}) has been already used, duplicate ignored \relax l.503 ...Package \pkg{stats4}}{show.Rdash.methods} [1919] [1920] [1921]) (./tcltk-pkg.tex [1922] Chapter 12. [1923] [1924] [1925] [1926] [1927] [1928] [1929] Underfull \vbox (badness 10000) has occurred while \output is active [1930] Underfull \vbox (badness 10000) has occurred while \output is active [1931] Underfull \hbox (badness 1546) in paragraph at lines 666--673 []\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing any Tk or Tcl com-mand by sim-ply run-ning [1932] [1933] [1934] [1935] [1936] Underfull \vbox (badness 10000) has occurred while \output is active [1937] [1938] [1939] [1940] [1941] [1942] [1943] [1944]) (./tools-pkg.tex Chapter 13. [1945] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1946] Underfull \hbox (badness 3039) in paragraph at lines 167--170 []\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1947] [1948] Underfull \hbox (badness 1308) in paragraph at lines 288--301 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 288--301 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 288--301 \T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 formatMastersthesis\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 288--301 \T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm /m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma tTechreport \T1/ptm/m/n/10 and [1949] [1950] Underfull \hbox (badness 3039) in paragraph at lines 392--394 []\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine to use. Over-rides any [1951] Underfull \hbox (badness 1142) in paragraph at lines 463--467 \T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s ub-di-rec-tory [1952] [1953] [1954] [1955] [1956] [1957] [1958] [1959] [1960] [1961] [1962] [1963] Underfull \hbox (badness 1014) in paragraph at lines 1174--1176 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1180--1182 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous [1964] Underfull \hbox (badness 10000) in paragraph at lines 1217--1220 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1217--1220 \T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 , [1965] [1966] [1967] [1968] [1969] Underfull \hbox (badness 2293) in paragraph at lines 1569--1571 []\T1/zi4/m/n/10 CRAN_memtest_notes() \T1/ptm/m/n/10 is now dep-re-cated, with its func-tion-al-ity in-te-grated into that of [1970] [1971] Underfull \hbox (badness 7981) in paragraph at lines 1707--1715 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of Underfull \hbox (badness 1082) in paragraph at lines 1717--1719 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see [1972] [1973] [1974] [1975]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.GSC}) has been already used, duplicate ignored \relax l.1919 \aliasA{GSC}{find\_gs\_cmd}{GSC} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ig nored \relax l.1920 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [1976] [1977] [1978] [1979] [1980] Overfull \hbox (17.27782pt too wide) in paragraph at lines 2222--2222 []\T1/zi4/m/n/9 writeLines(paste0("\\newcommand{\\logo}{\\if{html}{\\figure{Rl ogo.svg}{options: width=100}",[] [1981] [1982] [1983] Underfull \hbox (badness 7981) in paragraph at lines 2391--2399 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1984] [1985] [1986] [1987] [1988] [1989] [1990] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2885. LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2886. LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2886. [1991] [1992] [1993] [1994] [1995] Underfull \hbox (badness 1424) in paragraph at lines 3177--3179 []\T1/zi4/m/it/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t or of links, as re-turned by [1996] [1997] [1998] [1999] [2000] [2001] [2002] [2003] [2004] [2005] [2006] Underfull \hbox (badness 10000) in paragraph at lines 3878--3880 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [2007] [2008] Underfull \hbox (badness 10000) in paragraph at lines 4017--4020 []\T1/ptm/m/n/10 Where sup-ported (\T1/zi4/m/it/10 texi2dvi \T1/ptm/m/n/10 5.0 and later; \T1/zi4/m/it/10 texify.exe \T1/ptm/m/n/10 from MiK-TeX), op-tion [2009] [2010] Underfull \hbox (badness 1137) in paragraph at lines 4119--4121 []\T1/ptm/m/n/10 a ma-trix spec-i-fy-ing all pack-ages in-stalled on the lo-cal sys-tem, as from [2011] [2012] [2013] [2014] [2015] Underfull \hbox (badness 1796) in paragraph at lines 4427--4432 []\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over \T 1/zi4/m/it/10 write_PACKAGES \T1/ptm/m/n/10 in the \T1/zi4/m/it/10 type == [2016] Underfull \hbox (badness 1838) in paragraph at lines 4501--4507 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/it/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4501--4507 \T1/ptm/m/n/10 `\T1/zi4/m/it/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [2017] [2018] [2019] [2020] Underfull \hbox (badness 2197) in paragraph at lines 4776--4786 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][]\T1/zi4 /m/it/10 available.packages[][][]\T1/ptm/m/n/10 : [2021] Underfull \hbox (badness 1571) in paragraph at lines 4842--4846 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [2022] [2023] [2024]) (./utils-pkg.tex Chapter 14. [2025] Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/it/10 insertions\T1/ptm/m/n/10 ', [2026] [2027] [2028] [2029] [2030] Underfull \hbox (badness 10000) in paragraph at lines 378--383 \T1/zi4/m/it/10 c("vertical","horizontal","cascade","minimize","restore") \T1/p tm/m/n/10 with [2031] [2032] [2033] [2034] [2035] Underfull \hbox (badness 10000) in paragraph at lines 720--726 []\T1/ptm/m/n/10 Functions \T1/zi4/m/it/10 aspell_package_Rd_files\T1/ptm/m/n/1 0 , \T1/zi4/m/it/10 aspell_package_vignettes\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 720--726 \T1/zi4/m/it/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/it/10 aspel l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the [2036] [2037] Underfull \hbox (badness 5847) in paragraph at lines 857--863 []\T1/ptm/m/n/10 Argument \T1/zi4/m/it/10 filters \T1/ptm/m/n/10 can be used to se-lect which of the pack-ages on the repos-i-to- Underfull \hbox (badness 4229) in paragraph at lines 857--863 \T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi 4/m/it/10 NULL\T1/ptm/m/n/10 ) by func-tions such as [2038] Underfull \hbox (badness 3861) in paragraph at lines 925--930 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/it/10 "O S_type"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/it/ 10 "License_is_FOSS"\T1/ptm/m/n/10 , [2039] [2040] [2041] Underfull \hbox (badness 3323) in paragraph at lines 1108--1116 []\T1/ptm/m/n/10 (\T1/ptm/m/it/10 deprecated\T1/ptm/m/n/10 , use \T1/zi4/m/it/1 0 bibtex = T|F \T1/ptm/m/n/10 in-stead!) a num-ber, say $\OML/cmm/m/it/10 m$\T1 /ptm/m/n/10 , in-di-cat- Underfull \hbox (badness 2961) in paragraph at lines 1108--1116 \T1/ptm/m/n/10 ing that the bib-tex code should be given in ad-di-tion to the f or-mat- Underfull \hbox (badness 3919) in paragraph at lines 1108--1116 \T1/ptm/m/n/10 ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not more t han $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is Underfull \hbox (badness 3735) in paragraph at lines 1108--1116 \T1/ptm/m/n/10 taken as [][]\T1/zi4/m/it/10 getOption[][][]("citation.bibtex.ma x",1) \T1/ptm/m/n/10 which is \T1/zi4/m/it/10 1 \T1/ptm/m/n/10 typ-i-cally. Underfull \hbox (badness 1817) in paragraph at lines 1108--1116 \T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f ault by Underfull \hbox (badness 10000) in paragraph at lines 1120--1122 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [2042] [2043] [2044] [2045] [2046] [2047] [2048] [2049] Underfull \hbox (badness 1371) in paragraph at lines 1625--1627 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/it/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/it/10 ccaddress \T1/ptm/m/n/10 to pass to [2050] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 1695. [2051] [2052] [2053] [2054] [2055] [2056] [2057] [2058] [2059] [2060] Underfull \hbox (badness 2057) in paragraph at lines 2346--2348 []\T1/ptm/m/n/10 None for \T1/zi4/m/it/10 chooseCRANmirror()\T1/ptm/m/n/10 , th is func-tion is in-voked for its side ef-fect of up-dat-ing [2061] [2062] [2063] [2064] [2065] [2066]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.clipboard}) has been already used, duplicate ig nored \relax l.2697 ... the Clipboard in MS Windows}{clipboard} [2067] [2068] [2069] Underfull \hbox (badness 1748) in paragraph at lines 2864--2867 []\T1/ptm/m/n/10 A [][]\T1/zi4/m/it/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4 /m/it/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/it/10 simplify \T1/ptm/m /n/10 ar-gu-ment above. In the lat-ter case, the iden-tity [2070] [2071] [2072] [2073] [2074] [2075] Underfull \hbox (badness 5388) in paragraph at lines 3274--3278 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/it/10 .tab\T1/ptm/m/n/10 ', `\T1/zi4/ m/it/10 .txt\T1/ptm/m/n/10 ' or `\T1/zi4/m/it/10 .TXT\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/it/10 read.table[][][](...,header = Underfull \hbox (badness 2285) in paragraph at lines 3279--3282 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/it/10 .csv\T1/ptm/m/n/10 ' or `\T1/zi 4/m/it/10 .CSV\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/it/10 read.table[] [][](...,header = TRUE,sep = [2076] [2077] [2078] [2079] [2080] [2081] [2082] [2083] [2084] [2085] [2086] [2087] Underfull \hbox (badness 1430) in paragraph at lines 4063--4071 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the \T1/zi4/m/it/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the [2088] Underfull \hbox (badness 1231) in paragraph at lines 4140--4152 []\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers via en-vi-ron-ment vari-able [2089] [2090] Underfull \hbox (badness 10000) in paragraph at lines 4297--4299 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][]\T1/zi4/m/it/10 dow nload.file[][][] \T1/ptm/m/n/10 and [2091] [2092] [2093] [2094] [2095] [2096] [2097] [2098] [2099] [2100] [2101]pdf TeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.4995 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.format.1}) has been already used, dupl icate ignored \relax l.4995 ...mat Unordered and Ordered Lists}{format} [2102] [2103] [2104] [2105] [2106] [2107] [2108] [2109] Underfull \hbox (badness 1622) in paragraph at lines 5514--5518 []\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing to ex-ter-nal GUIs or to the [2110] [2111] [2112] [2113] [2114] [2115] [2116] [2117] Underfull \vbox (badness 3803) has occurred while \output is active [2118] [2119] [2120] [2121] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 6232. Underfull \hbox (badness 1371) in paragraph at lines 6236--6238 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/it/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/it/10 ccaddress \T1/ptm/m/n/10 to pass to [2122] Underfull \hbox (badness 1502) in paragraph at lines 6325--6330 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 6325--6330 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [2123] [2124] [2125] Underfull \hbox (badness 10000) in paragraph at lines 6498--6507 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, [2126] Underfull \hbox (badness 2150) in paragraph at lines 6562--6565 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [2127] [2128] Underfull \hbox (badness 3118) in paragraph at lines 6701--6703 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [2129] [2130] [2131] Underfull \hbox (badness 1325) in paragraph at lines 6880--6884 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/it/10 available.packag es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able Underfull \hbox (badness 4726) in paragraph at lines 6892--6898 \T1/ptm/m/n/10 used if \T1/zi4/m/it/10 repos = NULL\T1/ptm/m/n/10 . Can also be a char-ac-ter vec-tor, a sub-set of [2132] Underfull \hbox (badness 10000) in paragraph at lines 6964--6967 []\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to be Underfull \hbox (badness 10000) in paragraph at lines 6964--6967 \T1/ptm/m/n/10 passed to \T1/zi4/m/it/10 R CMD INSTALL \T1/ptm/m/n/10 for a sou rce pack-age in-stall. E.g., Underfull \hbox (badness 1424) in paragraph at lines 6972--6975 []\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p tm/m/it/10 not \T1/ptm/m/n/10 passed to [2133] Underfull \hbox (badness 3219) in paragraph at lines 7043--7050 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/it/ 10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 7043--7050 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 7043--7050 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by Underfull \hbox (badness 1596) in paragraph at lines 7043--7050 [][]\T1/zi4/m/it/10 getOption[][][]("install.packages.compile.from.source")\T1/ ptm/m/n/10 . \T1/zi4/m/it/10 type = "both" \T1/ptm/m/n/10 will be silently Underfull \hbox (badness 2932) in paragraph at lines 7051--7054 []\T1/ptm/m/n/10 Using pack-ages with \T1/zi4/m/it/10 type = "source" \T1/ptm/m /n/10 al-ways works pro-vided the pack-age con-tains no [2134] Underfull \hbox (badness 1546) in paragraph at lines 7177--7180 []\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing \T1/zi4/m/it/10 available.pa ckages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 ,] \T1/ptm/m /n/10 will [2135] Underfull \hbox (badness 10000) in paragraph at lines 7210--7215 [][][]\T1/zi4/m/it/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 download.packages [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 installed.packages[][][]\T1/ptm/m/n/ 10 , [2136] [2137] [2138] [2139] [2140] [2141] [2142] [2143] [2144] [2145] [2146] [2147] [2148] Underfull \hbox (badness 10000) in paragraph at lines 7997--7999 []\T1/ptm/m/n/10 typically the re-sult of \T1/zi4/m/it/10 methods(..)\T1/ptm/m/ n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class [2149] [2150] [2151] [2152] [2153] [2154] [2155] [2156] [2157] [2158] [2159] [2160] Underfull \hbox (badness 10000) in paragraph at lines 8735--8737 []\T1/ptm/m/n/10 for \T1/zi4/m/it/10 asDateBuilt()\T1/ptm/m/n/10 , a [][]\T1/zi 4/m/it/10 character[][][] \T1/ptm/m/n/10 string as from Underfull \hbox (badness 2310) in paragraph at lines 8757--8762 []\T1/ptm/m/n/10 If a `\T1/zi4/m/it/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [2161] [2162] [2163] [2164] [2165] [2166] [2167] [2168] [2169] Underfull \hbox (badness 1248) in paragraph at lines 9283--9287 []\T1/zi4/m/it/10 R CMD build \T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/m/ n/10 source tar-balls. The name(s) of the pack-ages are taken from the [2170] Underfull \hbox (badness 1789) in paragraph at lines 9363--9365 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [2171] [2172] [2173] [2174] [2175] [2176] [2177] [2178] [2179] [2180] [2181] [2182] Underfull \hbox (badness 1097) in paragraph at lines 10200--10203 []\T1/ptm/m/n/10 The name \T1/zi4/m/it/10 "clipboard" \T1/ptm/m/n/10 may also b e used on Win-dows, in which case [2183] [2184] Underfull \hbox (badness 3000) in paragraph at lines 10336--10341 [][][]\T1/zi4/m/it/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/it/10 read.t able[][][]\T1/ptm/m/n/10 ; [2185] [2186] [2187] [2188] [2189] [2190] [2191] [2192] [2193] Underfull \hbox (badness 2134) in paragraph at lines 10925--10930 [][][]\T1/zi4/m/it/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/it/10 write. table[][][]\T1/ptm/m/n/10 ; [2194] Underfull \hbox (badness 10000) in paragraph at lines 10981--10986 []\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for Underfull \hbox (badness 10000) in paragraph at lines 10981--10986 \T1/zi4/m/it/10 HKEY_LOCAL_MACHINE\T1/ptm/m/n/10 , \T1/zi4/m/it/10 HKEY_CLASSES _ROOT\T1/ptm/m/n/10 . \T1/zi4/m/it/10 HKEY_CURRENT_USER\T1/ptm/m/n/10 , [2195] [2196] [2197] [2198] [2199] [2200] [2201] [2202] [2203] Underfull \hbox (badness 2469) in paragraph at lines 11475--11479 []\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia , The Free En-cy-clo-pe-dia. Underfull \hbox (badness 3428) in paragraph at lines 11475--11479 [][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / w / index . php ? title = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac- [2204] [2205] [2206] [2207] [2208] [2209] Underfull \hbox (badness 4060) in paragraph at lines 11891--11894 []\T1/ptm/m/n/10 If `\T1/zi4/m/it/10 --default-packages\T1/ptm/m/n/10 ' is not used, then \T1/zi4/m/it/10 Rscript \T1/ptm/m/n/10 checks the en-vi-ron-ment var i-able Overfull \hbox (18.77168pt too wide) in paragraph at lines 11914--11914 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] [2210] [2211] [2212] [2213] Underfull \hbox (badness 2150) in paragraph at lines 12162--12164 [][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/ ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / www . gnu . org / software / emac s / manual / [2214] [2215] [2216] [2217] Underfull \hbox (badness 10000) in paragraph at lines 12381--12385 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/it/10 stylepath \T1/ptm/m/n/10 is n ow taken from the en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 12412--12418 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a [2218] [2219] Underfull \hbox (badness 1009) in paragraph at lines 12606--12618 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If [2220] Underfull \hbox (badness 4779) in paragraph at lines 12646--12648 []\T1/ptm/m/n/10 The file `\T1/zi4/m/it/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure s the R GUI (\T1/zi4/m/it/10 Rgui\T1/ptm/m/n/10 ) con-sole un-der MS Win-dows a nd Underfull \hbox (badness 1077) in paragraph at lines 12676--12683 \T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p er-sonal' di-rec-tory, oth-er-wise to [2221] [2222] [2223] [2224] [2225] [2226] [2227] Underfull \hbox (badness 3780) in paragraph at lines 13084--13088 []\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1 /zi4/m/it/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via Underfull \hbox (badness 2635) in paragraph at lines 13100--13103 []\T1/ptm/m/n/10 Repository `\T1/zi4/m/it/10 CRAN\T1/ptm/m/n/10 ' is treated sp e-cially: the value is taken from the cur-rent set-ting of [2228] [2229] [2230] [2231] Underfull \hbox (badness 2302) in paragraph at lines 13305--13307 []\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t o the Win-dows API call [2232] [2233] [2234] [2235] Underfull \hbox (badness 10000) in paragraph at lines 13603--13608 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/it/10 TRUE \T1/ptm/m/n/10 (de-fault), [] []\T1/zi4/m/it/10 deparse[][][](control = ) \T1/ptm/m/n/10 will not have Underfull \hbox (badness 5970) in paragraph at lines 13612--13615 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive [2236] [2237] Underfull \vbox (badness 3803) has occurred while \output is active [2238] [2239] [2240] [2241] [2242] [2243] Underfull \hbox (badness 2932) in paragraph at lines 14050--14057 []\T1/ptm/m/n/10 If \T1/zi4/m/it/10 syntax = NULL \T1/ptm/m/n/10 (the de-fault) then the avail-able syn-tax ob-jects are con-sulted in turn, Underfull \hbox (badness 1688) in paragraph at lines 14050--14057 \T1/ptm/m/n/10 and se-lected if their \T1/zi4/m/it/10 extension \T1/ptm/m/n/10 com-po-nent matches (as a reg-exp) the file name. Ob- [2244] [2245] [2246] [2247] Underfull \hbox (badness 6510) in paragraph at lines 14358--14362 []\T1/ptm/m/n/10 When ar-gu-ment \T1/zi4/m/it/10 tar \T1/ptm/m/n/10 is set to t he com-mand \T1/zi4/m/it/10 tar \T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment vari-a ble Underfull \hbox (badness 10000) in paragraph at lines 14365--14368 [][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / pubs . opengroup . org / Underfull \hbox (badness 2245) in paragraph at lines 14365--14368 \T1/zi4/m/it/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9 2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX [2248] [2249] [2250] [2251] [2252] [2253] [2254] [2255] [2256] [2257] Underfull \hbox (badness 10000) in paragraph at lines 15032--15037 []\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/it/10 destdir \T1/ptm/m/n/10 and \ T1/zi4/m/it/10 dependencies \T1/ptm/m/n/10 to be passed to Underfull \hbox (badness 3861) in paragraph at lines 15032--15037 [][]\T1/zi4/m/it/10 install.packages[][][] \T1/ptm/m/n/10 and \T1/zi4/m/it/10 i gnore_repo_cache\T1/ptm/m/n/10 , \T1/zi4/m/it/10 max_repo_cache_age \T1/ptm/m/n /10 and Underfull \hbox (badness 1052) in paragraph at lines 15038--15040 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. See [2258] Underfull \hbox (badness 10000) in paragraph at lines 15097--15100 [][][]\T1/zi4/m/it/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1 0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 download.package s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 installed.packages[][][]\T1/ptm/m/n /10 , [2259] [2260] [2261] [2262] [2263] [2264] [2265] [2266] [2267] [2268] [2269] [2270] [2271] Underfull \hbox (badness 10000) in paragraph at lines 15875--15877 []\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec- tion e.g. \T1/zi4/m/it/10 file = [2272] [2273] [2274]) (./fullrefman.ind [2275] [2276] [2277] [2278] [2279] [2280] [2281] [2282] [2283] [2284] [2285] [2286] [2287] [2288] [2289] [2290] [2291] [2292] [2293] [2294] [2295] [2296] [2297] [2298] [2299] [2300] [2301] [2302] [2303] [2304] [2305] [2306] [2307] [2308] [2309] [2310] [2311] [2312] [2313] [2314] [2315] [2316] [2317] [2318] [2319] [2320] [2321] [2322] [2323] [2324] [2325] [2326] [2327] [2328] [2329] Overfull \hbox (33.3567pt too wide) in paragraph at lines 9529--9531 []\T1/zi4/m/it/10 package_native_routine_registration_skeleton\T1/ptm/m/n/10 , [2330] [2331] [2332] [2333] [2334] [2335] Overfull \hbox (20.8567pt too wide) in paragraph at lines 10875--10877 []\T1/zi4/m/it/10 R_AVAILABLE_PACKAGES_CACHE_CONTROL_MAX_AGE [2336] [2337] [2338] [2339] [2340] [2341] [2342] [2343] Overfull \hbox (5.8567pt too wide) in paragraph at lines 12652--12654 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_depends Overfull \hbox (5.8567pt too wide) in paragraph at lines 12654--12656 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_results Overfull \hbox (5.8567pt too wide) in paragraph at lines 12656--12658 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_timings [2344] [2345] [2346] [2347] [2348] [2349] [2350] [2351] [2352] [2353]) (./fullrefman.aux) LaTeX Font Warning: Some font shapes were not available, defaults substituted. Package rerunfilecheck Warning: File `fullrefman.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information)pdfTeX warning (dest): name {Rfn.write.matrix} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.lmList} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.dgTMatrix} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.glht} has been referenced but does not exist, r eplaced by a fixed one pdfTeX warning (dest): name{Rfn.survreg} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.coxph} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.stepAIC} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.rinvGauss} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.gamma.shape} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.profile.glm} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.cov.mcd} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.cov.mve} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.Insurance} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.sparse.model.matrix} has been referenced but do es not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.lqs} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.logLik.lme} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.logLik.gls} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.lmrob} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.rlm} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.wilcox.Rul.test} has been referenced but does n ot exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.loglm} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.nlsList} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.daisy} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.spearman.test} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.pSpearman} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.pKendall} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.Kendall} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.cor.fk} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.dMatrix} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.dgCMatrix} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.confint.nls} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.confint.glm} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.sammon} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.isoMDS} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.width.SJ} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.bcv} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.ucv} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.bandwidth.nrd} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.agnes} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.diana} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.lme} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.ansari.Rul.test} has been referenced but does n ot exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.rpart} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.sparseMatrix} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.showDefault} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getGroupMembers} has been referenced but does n ot exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.resetGeneric} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.linearizeMlist} has been referenced but does no t exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getGeneric} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getMethodsForDispatch} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.setDataPart} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getDataPart} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.rBind} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.cBind} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.possibleExtends} has been referenced but does n ot exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.panel.identify} has been referenced but does no t exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.trellis.focus} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.mosaic} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.levelplot} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.contourplot} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.assoc} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.dpih} has been referenced but does not exist, r eplaced by a fixed one pdfTeX warning (dest): name{Rfn.truehist} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.bkde2D} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.which.is.max} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.roundX} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getNamespace} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.asNamespace} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.formalArgs} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.isRematched} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.chron} has been referenced but does not exist, replaced by a fixed one {/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc} {/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}{/ usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-t1-0.enc} Output written on fullrefman.pdf (2384 pages, 6451824 bytes). Transcript written on fullrefman.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./fullrefman.tex LaTeX2e <2021-06-01> patch level 1 L3 programming layer <2021-08-27> (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2021/02/12 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (../../share/texmf/tex/latex/Rd.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/zi4.sty `inconsolata-zi4' v1.12, 2019/05/17 Text macros for Inconsolata (msharpe) (/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/keyval.tex))))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref-langpatches.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 377. Package hyperref Warning: Option `pagebackref' has already been used, (hyperref) setting the option has no effect on input line 377. ) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg))) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty) Writing index file fullrefman.idx (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./fullrefman.aux) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (./fullrefman.out) (./fullrefman.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] (./fullrefman.toc (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd) [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29]) [30] (./base-pkg.tex Chapter 1. [1] [2] Underfull \hbox (badness 6995) in paragraph at lines 143--151 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1 /ptm/m/n/10 such that \T1/zi4/m/n/10 1 -x != 1\T1/ptm/m/n/10 . It Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/ptm/m/n/10 equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1/pt m/m/n/10 if \T1/zi4/m/n/10 double.base Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.rounding \T1/ptm/m/n/10 is 0; oth- er-wise, it is \T1/zi4/m/n/10 (double.base Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2\T1/ptm/m/n/10 . Nor-mally \T1/zi4/m /n/10 1.110223e-16\T1/ptm/m/n/10 . As Underfull \hbox (badness 4995) in paragraph at lines 143--151 \T1/zi4/m/n/10 double.neg.ulp.digits \T1/ptm/m/n/10 is bounded be-low by \T1/zi 4/m/n/10 -(double.digits + 3)\T1/ptm/m/n/10 , [3] [4] Underfull \hbox (badness 10000) in paragraph at lines 212--217 []\T1/ptm/m/n/10 when [][]\T1/zi4/m/n/10 capabilities[][][]("long.double") \T1/ ptm/m/n/10 is true, there are 10 such Underfull \hbox (badness 1675) in paragraph at lines 212--217 \T1/zi4/m/n/10 "longdouble." \T1/ptm/m/n/10 val-ues, spec-i-fy-ing the \T 1/zi4/m/n/10 long double \T1/ptm/m/n/10 prop-erty cor- [5] Underfull \hbox (badness 1178) in paragraph at lines 322--325 []\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/ 10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues [6] [7] [8] [9] Underfull \hbox (badness 2556) in paragraph at lines 561--567 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ', [10] [11] [12] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] (/usr/share/texlive/texmf-dist/tex/latex/base/t1cmtt.fd) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [23] [24] [25] Underfull \hbox (badness 10000) in paragraph at lines 1567--1573 [26] [27] [28] [29] [30] [31] [32] Overfull \hbox (26.27782pt too wide) in paragraph at lines 2045--2045 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [33] [34] [35] [36] [37] [38] Underfull \hbox (badness 10000) in paragraph at lines 2492--2494 []\T1/ptm/m/n/10 The val-ues of the splits can also be ob-tained (less ef-fi-ci ently) by Underfull \hbox (badness 10000) in paragraph at lines 2495--2500 [][][]\T1/zi4/m/n/10 apply[][][] \T1/ptm/m/n/10 al-ways sim-pli-fies com-mon le ngth re-sults, so at-tempt-ing to split via Underfull \hbox (badness 1102) in paragraph at lines 2495--2500 \T1/zi4/m/n/10 apply(x,MARGIN,identity) \T1/ptm/m/n/10 does not work (as it sim -ply gives \T1/zi4/m/n/10 x\T1/ptm/m/n/10 ). By chain-ing \T1/zi4/m/n/10 asplit [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] Underfull \hbox (badness 10000) in paragraph at lines 3890--3892 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [61] [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] Underfull \hbox (badness 2521) in paragraph at lines 5180--5182 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] [94] [95] [96] [97] [98] [99] Overfull \hbox (5.27168pt too wide) in paragraph at lines 6371--6371 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [100] [101] [102] [103] [104] [105] Overfull \hbox (46.35893pt too wide) in paragraph at lines 6837--6840 []\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa ult","internal","wininet","libcurl")\T1/ptm/m/n/10 : [106] [107] [108] Underfull \hbox (badness 10000) in paragraph at lines 7020--7023 []\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo st gen-eral form (from RFC1738) is [109] [110] Underfull \hbox (badness 6063) in paragraph at lines 7202--7208 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \ T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re- Underfull \hbox (badness 2343) in paragraph at lines 7202--7208 \T1/ptm/m/n/10 move a Byte Or-der Mark if present (which it of-ten is for files and web-pages gen-er- Underfull \hbox (badness 1708) in paragraph at lines 7202--7208 \T1/ptm/m/n/10 ated by Mi-crosoft ap-pli-ca-tions). If a BOM is re-quired (it i s not rec-om-mended) when Underfull \hbox (badness 1831) in paragraph at lines 7202--7208 \T1/ptm/m/n/10 writ-ing it should be writ-ten ex-plic-itly, e.g. by \T1/zi4/m/n /10 writeChar("\ufeff",con,eos = NULL) \T1/ptm/m/n/10 or [111] Underfull \hbox (badness 1303) in paragraph at lines 7264--7271 []\T1/zi4/m/n/10 file \T1/ptm/m/n/10 can be used with \T1/zi4/m/n/10 descriptio n = "clipboard" \T1/ptm/m/n/10 in mode \T1/zi4/m/n/10 "r" \T1/ptm/m/n/10 only. This reads the Underfull \hbox (badness 2111) in paragraph at lines 7275--7280 []\T1/ptm/m/n/10 Unix users wish-ing to \T1/ptm/m/it/10 write \T1/ptm/m/n/10 to one of the X11 se-lec-tions may be able to do so via [112] [113] Underfull \vbox (badness 3803) has occurred while \output is active [114] Underfull \vbox (badness 10000) has occurred while \output is active [115] [116] Underfull \hbox (badness 1077) in paragraph at lines 7593--7599 []\T1/ptm/m/n/10 A length-one log-i-cal vec-tor that is not \T1/zi4/m/n/10 NA\T 1/ptm/m/n/10 . Con-di-tions of length greater Underfull \hbox (badness 1231) in paragraph at lines 7593--7599 \T1/ptm/m/n/10 than one are cur-rently ac-cepted with a warn-ing, but only the first el-e- [117] [118] [119] [120] [121] [122] Underfull \hbox (badness 2096) in paragraph at lines 7948--7952 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [123] [124] Underfull \hbox (badness 2351) in paragraph at lines 8062--8065 [][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T 1/ptm/m/n/10 , [125] [126] [127] [128] [129] Underfull \hbox (badness 4479) in paragraph at lines 8388--8399 [][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[] [][] \T1/ptm/m/n/10 (for the col-umn names), [130] [131] [132] [133] [134] [135] [136] Underfull \hbox (badness 1629) in paragraph at lines 8839--8851 []\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a re ig-nored, and real times Underfull \hbox (badness 1609) in paragraph at lines 8839--8851 \T1/ptm/m/n/10 there is a prob-lem in the POSIX/C99 stan-dard with \T1/zi4/m/n/ 10 "1969-12-31 23:59:59 UTC"\T1/ptm/m/n/10 , which Underfull \hbox (badness 2426) in paragraph at lines 8839--8851 \T1/ptm/m/n/10 is \T1/zi4/m/n/10 -1 \T1/ptm/m/n/10 in cal-en-dar time and that value is on those OSes also used as an er-ror code. [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] Underfull \hbox (badness 1178) in paragraph at lines 9596--9600 []\T1/ptm/m/n/10 If true, [][]\T1/zi4/m/n/10 list[][][]\T1/ptm/m/n/10 s and ato mic vec-tors with non-[][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 names (see [][ ]\T1/zi4/m/n/10 names[][][]\T1/ptm/m/n/10 ) are de- [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] Underfull \hbox (badness 6396) in paragraph at lines 11228--11236 []\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len t method def-i-ni-tions for Underfull \hbox (badness 1946) in paragraph at lines 11228--11236 \T1/zi4/m/n/10 duplicated \T1/ptm/m/n/10 and \T1/zi4/m/n/10 anyDuplicated\T1/pt m/m/n/10 , \T1/zi4/m/n/10 anyDuplicated(x,...) \T1/ptm/m/n/10 is a ``gen-er-al- ized'' short-cut for [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188] Underfull \hbox (badness 4569) in paragraph at lines 12377--12381 []\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been passed as an ar-gu-ment Underfull \hbox (badness 2401) in paragraph at lines 12377--12381 \T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller' s en-vi-ron-ment, i.e., one needs [189] [190] [191] [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] Underfull \hbox (badness 2253) in paragraph at lines 14062--14064 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [215] Underfull \hbox (badness 1565) in paragraph at lines 14138--14142 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/ 10 , and [216] Underfull \hbox (badness 4927) in paragraph at lines 14182--14184 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m /n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with \T1/zi4 /m/n/10 fsep = [217] [218] Underfull \hbox (badness 3148) in paragraph at lines 14284--14289 [][][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 help[][][]\T1/ptm/m/n/10 ; [][]\T1/zi4 /m/n/10 RShowDoc[][][] \T1/ptm/m/n/10 call \T1/zi4/m/n/10 file.show() \T1/ptm/m /n/10 for \T1/zi4/m/n/10 type = "text"\T1/ptm/m/n/10 . Con-sider Underfull \hbox (badness 1466) in paragraph at lines 14331--14334 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/ zi4/m/n/10 file.copy \T1/ptm/m/n/10 and [219] [220] Underfull \hbox (badness 10000) in paragraph at lines 14458--14462 [][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [ ][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 14469--14472 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [221] [222] [223] [224] [225] Underfull \hbox (badness 3965) in paragraph at lines 14766--14770 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [226] [227] [228] [229] [230] [231] [232] [233] [234] [235] [236] [237] Underfull \hbox (badness 4429) in paragraph at lines 15546--15549 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] \T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for [238] [239] Underfull \hbox (badness 10000) in paragraph at lines 15652--15654 []\T1/ptm/m/n/10 This works via \T1/zi4/m/n/10 prettyNum()\T1/ptm/m/n/10 , whic h calls Underfull \hbox (badness 1215) in paragraph at lines 15652--15654 \T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero) \T1/ptm/m/n/10 three times in this case, see Underfull \hbox (badness 10000) in paragraph at lines 15674--15679 []\T1/ptm/m/n/10 For num-bers, \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 calls \T 1/zi4/m/n/10 prettyNum() \T1/ptm/m/n/10 when needed which it-self calls Underfull \hbox (badness 1558) in paragraph at lines 15674--15679 \T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero)\T1/ptm/m/n/10 . (\T1/ptm/m /it/10 ``when needed''\T1/ptm/m/n/10 : when \T1/zi4/m/n/10 zero.print \T1/ptm/m /n/10 is not Underfull \hbox (badness 10000) in paragraph at lines 15686--15690 []\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b ers on the dec-i-mal point, so Underfull \hbox (badness 2426) in paragraph at lines 15686--15690 \T1/zi4/m/n/10 formatC(c(6.11,13.1),digits = 2,format = "fg") \T1/ptm/m/n/10 gi ves \T1/zi4/m/n/10 c("6.1"," 13")\T1/ptm/m/n/10 . If you want [240] Underfull \hbox (badness 2035) in paragraph at lines 15725--15729 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt m/m/n/10 3.2.0: for use within [241] Underfull \vbox (badness 10000) has occurred while \output is active [242] [243] [244] [245] [246] [247] [248] [249] [250] Underfull \hbox (badness 2452) in paragraph at lines 16338--16342 []\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 16338--16342 \T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_ WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and [251] [252] Underfull \hbox (badness 1092) in paragraph at lines 16511--16516 [][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t he DLL has been loaded us-ing [253] [254] [255] [256] Underfull \hbox (badness 6741) in paragraph at lines 16764--16768 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \ T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10 , [257] [258] [259] [260] [261] [262] [263] [264] [265] [266] Underfull \vbox (badness 10000) has occurred while \output is active [267] [268] [269] [270] [271] [272] [273] [274] [275] [276] [277] Underfull \hbox (badness 1478) in paragraph at lines 18113--18116 []\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [278] [279] [280] [281] Underfull \hbox (badness 10000) in paragraph at lines 18381--18383 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww w . unicode . org / reports / tr35 / [282] [283] [284] [285] [286] [287] [288] [289] [290] Underfull \hbox (badness 1442) in paragraph at lines 18980--18982 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see [291] [292] [293] [294] [295] Underfull \hbox (badness 10000) in paragraph at lines 19311--19317 [296] [297] [298] [299] Underfull \hbox (badness 1248) in paragraph at lines 19556--19559 []\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n /10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/ m/n/10 , [300] [301] [302] [303] Underfull \hbox (badness 4739) in paragraph at lines 19819--19821 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [304] [305] [306] [307] Underfull \hbox (badness 1603) in paragraph at lines 20046--20049 []\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/zi4/m/n/10 https : / / w ww . netlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / www . [308] [309] [310] Underfull \hbox (badness 1596) in paragraph at lines 20273--20278 \T1/ptm/m/n/10 trix or, if \T1/zi4/m/n/10 simplify = "array"\T1/ptm/m/n/10 , an ar-ray if ap-pro-pri-ate, by ap-ply-ing \T1/zi4/m/n/10 simplify2array()\T1/ptm /m/n/10 . [311] [312] [313] [314] [315] [316] [317] [318] [319] [320] Underfull \hbox (badness 2469) in paragraph at lines 20878--20883 []\T1/ptm/m/n/10 In late 2017 a \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 in-stal-l a-tion was seen di-vided into two li-braries, \T1/zi4/m/n/10 libcurl \T1/ptm/m/ n/10 and [321] Underfull \hbox (badness 10000) in paragraph at lines 20972--20976 []\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory [322] [323] [324] Underfull \hbox (badness 1014) in paragraph at lines 21142--21147 []\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1 0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if [325] [326] [327] [328] [329] [330] [331] [332] [333] [334] [335] [336] [337] Underfull \hbox (badness 1264) in paragraph at lines 21991--21996 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [338] Underfull \hbox (badness 4441) in paragraph at lines 22020--22023 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory \T1/zi4/m/n/10 "LC_ALL" \T1/ptm/ m/n/10 sets only cat-e-gories \T1/zi4/m/n/10 "LC_COLLATE"\T1/ptm/m/n/10 , \T1/z i4/m/n/10 "LC_CTYPE"\T1/ptm/m/n/10 , [339] [340] [341] [342] [343] [344] [345] [346] [347] [348] [349] Underfull \hbox (badness 6047) in paragraph at lines 22794--22796 []\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n /10 has the prop-erty that \T1/zi4/m/n/10 make.unique(c(A,B)) == [350] [351] [352] [353] [354] [355] [356] [357] [358] [359] [360] [361] [362] [363] [364] [365] [366] [367] Underfull \hbox (badness 10000) in paragraph at lines 23874--23880 [][]$\T1/zi4/m/n/10 https : / / zlib . net/$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m /n/10 https : / / en . wikipedia . org / wiki / Gzip$[][]\T1/ptm/m/n/10 , [][]$ \T1/zi4/m/n/10 http : / / www . bzip . org/$[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 23874--23880 [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm /m/n/10 , [][]$\T1/zi4/m/n/10 https : / / tukaani . org / xz/$[][] \T1/ptm/m/n/ 10 and [][]$\T1/zi4/m/n/10 https : [368] [369] [370] [371] [372] [373] [374] Underfull \hbox (badness 2790) in paragraph at lines 24375--24378 []\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s ages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 24375--24378 \T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m es-sages, so can be sup-pressed by [375] [376] [377] [378] [379] Underfull \hbox (badness 1194) in paragraph at lines 24664--24667 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 . It calls [380] [381] [382] Underfull \hbox (badness 2368) in paragraph at lines 24871--24877 []\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 , \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond- ing list, i.e., Underfull \hbox (badness 4981) in paragraph at lines 24871--24877 \T1/zi4/m/n/10 names(as.list(env,all.names = TRUE)) \T1/ptm/m/n/10 which are al so given by [][]\T1/zi4/m/n/10 ls[][][](env,all.names = [383] [384] [385] [386] [387] [388] Underfull \hbox (badness 10000) in paragraph at lines 25256--25259 []\T1/ptm/m/n/10 optional [][]\T1/zi4/m/n/10 logical[][][] \T1/ptm/m/n/10 even- tu-ally to be passed to \T1/zi4/m/n/10 print()\T1/ptm/m/n/10 , used by [389] [390] [391] [392] [393] [394] [395] [396] [397] [398] Underfull \hbox (badness 10000) in paragraph at lines 25876--25878 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m ore ef-fi-cient than \T1/zi4/m/n/10 pkg %in% [399] [400] [401] [402] [403] [404] [405] [406] [407] [408] [409] [410] Underfull \hbox (badness 1038) in paragraph at lines 26737--26745 []\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/ 10 R \T1/ptm/m/n/10 starts up. Ini-tially Underfull \hbox (badness 1735) in paragraph at lines 26737--26745 \T1/ptm/m/n/10 set from value of the en-vi-ron-ment vari-able \T1/zi4/m/n/10 R_ DEFAULT_PACKAGES\T1/ptm/m/n/10 , or if that is un- Underfull \hbox (badness 1292) in paragraph at lines 26737--26745 \T1/ptm/m/n/10 set to \T1/zi4/m/n/10 c("datasets","utils","grDevices","graphics ","stats","methods")\T1/ptm/m/n/10 . (Set Underfull \hbox (badness 1881) in paragraph at lines 26746--26749 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are [411] Underfull \hbox (badness 6220) in paragraph at lines 26770--26772 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [412] Underfull \hbox (badness 2142) in paragraph at lines 26911--26915 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able [413] Underfull \hbox (badness 1968) in paragraph at lines 26968--26973 []\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able [414] [415] [416] Underfull \hbox (badness 10000) in paragraph at lines 27262--27268 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/ n/10 setRepositories[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 27262--27268 \T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "https://bioconductor.org"\T1/ ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 27262--27268 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de"\ T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 10000) in paragraph at lines 27275--27278 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][ ][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10 and [417] Underfull \hbox (badness 2689) in paragraph at lines 27301--27303 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see Underfull \hbox (badness 10000) in paragraph at lines 27336--27341 []\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/ 10 (and in-di-rectly Underfull \hbox (badness 2529) in paragraph at lines 27342--27353 \T1/ptm/m/n/10 in-di-rectly [][]\T1/zi4/m/n/10 update.packages[][][]\T1/ptm/m/n /10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si- Underfull \hbox (badness 2512) in paragraph at lines 27342--27353 \T1/ptm/m/n/10 ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi4/m /n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use and Underfull \hbox (badness 7203) in paragraph at lines 27354--27357 []\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/ n/10 and [418] [419] Underfull \vbox (badness 3803) has occurred while \output is active [420] [421] [422] [423] [424] [425] Underfull \hbox (badness 10000) in paragraph at lines 27901--27904 []\T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 str2lang(s ) \T1/ptm/m/n/10 re-turn spe-cial ver-sions of [426] Underfull \hbox (badness 7925) in paragraph at lines 27982--27986 []\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 vec-to r \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n /10 cor-re-sponds to Underfull \hbox (badness 1622) in paragraph at lines 27982--27986 [][]\T1/zi4/m/n/10 parse[][][](text = s,keep.source=FALSE)\T1/ptm/m/n/10 , whic h is al-ways of type ([][]\T1/zi4/m/n/10 typeof[][][]\T1/ptm/m/n/10 ) and [][]\ T1/zi4/m/n/10 class[][][] [427] Underfull \hbox (badness 6125) in paragraph at lines 27987--27996 []\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 string \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2lang(s) \T1/ptm/m/n/10 cor -re-sponds to [][]\T1/zi4/m/n/10 parse[][][](text = [428] [429] [430] [431] [432] [433] [434] [435] [436] [437] [438] [439] [440] [441] [442] Underfull \hbox (badness 2726) in paragraph at lines 28935--28938 []\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di -cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put, see [443] [444] [445] [446] [447] [448] [449] [450] [451] [452] [453] [454] Underfull \hbox (badness 1603) in paragraph at lines 29685--29688 []\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/zi4/m/n/10 https : / / w ww . netlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / www . [455] [456] [457] [458] [459] [460] [461] [462] [463] [464] [465] [466] [467] [468] [469] Underfull \hbox (badness 1533) in paragraph at lines 30713--30716 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [470] [471] [472] Underfull \hbox (badness 1163) in paragraph at lines 30876--30887 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\ T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [473] [474] [475] [476] [477] [478] [479] Underfull \vbox (badness 10000) has occurred while \output is active [480] [481] [482] [483] [484] [485] [486] [487] [488] [489] [490] [491] [492] [493] [494] [495] [496] [497] [498] Underfull \hbox (badness 10000) in paragraph at lines 32539--32543 []\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n /10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 32539--32543 \T1/zi4/m/n/10 "(?[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t he matches are also re-turned by name. Underfull \hbox (badness 3557) in paragraph at lines 32560--32562 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919799 / Underfull \hbox (badness 1122) in paragraph at lines 32563--32567 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 pcre2pattern \T1/ptm/m/n/10 or \T1/zi4/m/n/ 10 pcrepattern man \T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m/n/10 ht tps : / / www . pcre . org / [499] [500] Underfull \vbox (badness 10000) has occurred while \output is active [501] [502] [503] [504] [505] [506] [507] [508] Underfull \hbox (badness 1655) in paragraph at lines 33157--33159 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm /m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] [519] [520] [521] [522] [523] [524] [525] [526] Underfull \hbox (badness 2261) in paragraph at lines 34349--34354 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i t ap-plies to all fields; oth-er-wise, if [527] Underfull \hbox (badness 10000) in paragraph at lines 34376--34382 []\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac- ters Underfull \hbox (badness 1484) in paragraph at lines 34376--34382 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 \a,\b,\f,\n,\r,\t,\v\T1/ptm/m/n/10 ' and oc-tal and hex-adec-i-mal rep-re-sen-ta-tions like [528] [529] [530] [531] [532] [533] [534] [535] [536] [537] [538] [539] [540] [541] [542] [543] [544] [545] [546] [547] [548] [549] [550] [551] [552] [553] [554] [555] [556] [557] [558] [559] [560] [561] [562] [563] [564] [565] [566] [567] Underfull \hbox (badness 10000) in paragraph at lines 36987--36989 [][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919 799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for [568] Underfull \vbox (badness 10000) has occurred while \output is active [569] [570] [571] [572] [573] [574] [575] [576] Underfull \hbox (badness 1072) in paragraph at lines 37584--37588 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 37589--37593 []\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/ 10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 - -no-init-file\T1/ptm/m/n/10 ', [577] Underfull \hbox (badness 10000) in paragraph at lines 37619--37625 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 37619--37625 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 37619--37625 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in Underfull \hbox (badness 3009) in paragraph at lines 37634--37641 []\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt m/m/n/10 ' which is read Underfull \hbox (badness 1038) in paragraph at lines 37634--37641 \T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron- ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 37634--37641 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 37634--37641 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [578] [579] [580] Underfull \hbox (badness 2644) in paragraph at lines 37866--37870 []\T1/ptm/m/n/10 alternative to \T1/zi4/m/n/10 exprs \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 ...\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an [581] [582] [583] Underfull \hbox (badness 1142) in paragraph at lines 38018--38024 []\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form at \T1/ptm/m/n/10 meth-ods is \T1/zi4/m/n/10 "%Y-%m-%d [584] [585] [586] [587] [588] [589] [590] [591] [592] [593] [594] [595] [596] [597] [598] [599] [600] [601] [602] [603] Underfull \hbox (badness 1565) in paragraph at lines 39297--39299 []\T1/ptm/m/n/10 integer code used in \T1/zi4/m/n/10 quantile(*,type=quantile.t ype) \T1/ptm/m/n/10 for the de-fault [604] [605] [606] [607] [608] [609] [610] [611] [612] [613] Underfull \hbox (badness 1137) in paragraph at lines 39887--39893 []\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild -cards in file paths. For pre-cise de-tails Underfull \hbox (badness 4967) in paragraph at lines 39906--39911 []\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi s may need to be matched ex-plic-itly: for ex-am-ple [614] [615] Underfull \hbox (badness 1616) in paragraph at lines 40026--40031 \T1/zi4/m/n/10 system("id") \T1/ptm/m/n/10 is much more portable on Unix-alikes , pro-vided only the POSIX op-tions [616] [617] [618] [619] [620] [621] [622] [623] [624] Underfull \hbox (badness 1472) in paragraph at lines 40568--40571 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee p their source in-clud-ing com-ments, see [625] [626] [627] [628] [629] [630] [631] [632] [633] [634] [635] [636] [637] Underfull \vbox (badness 3803) has occurred while \output is active [638] Underfull \hbox (badness 10000) in paragraph at lines 41487--41491 []\T1/ptm/m/n/10 On 64-bit plat-forms \T1/zi4/m/n/10 bin \T1/ptm/m/n/10 can hav e $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., \T1/zi4/m/n/10 length(bin) > [639] [640] [641] [642] Underfull \hbox (badness 10000) in paragraph at lines 41738--41741 [][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [ ][]$https : / / developer . r-[]project . org / [643] [644] [645] Underfull \hbox (badness 10000) in paragraph at lines 41922--41926 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[ ][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer . [646] [647] [648] [649] [650] [651] [652] [653] [654] Underfull \hbox (badness 10000) in paragraph at lines 42547--42550 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / data . iana . org / time-[ ]zones / [655] [656] [657] [658] [659] [660] Underfull \vbox (badness 10000) has occurred while \output is active [661] [662] [663] [664] [665] [666] [667] [668] Underfull \hbox (badness 1990) in paragraph at lines 43469--43477 []\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e r-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 43469--43477 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less [669] [670] [671] [672] [673] [674] [675] [676] Underfull \hbox (badness 1917) in paragraph at lines 43975--43982 []\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/ ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute [677] [678] [679] [680] [681] [682] [683] Underfull \hbox (badness 2452) in paragraph at lines 44428--44434 [][][]\T1/zi4/m/n/10 file[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.access[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.append[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 file.copy[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.create[] [][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.exists[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [684] [685] [686] [687] [688] [689] Underfull \hbox (badness 3668) in paragraph at lines 44802--44804 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di- ately, even if [690] [691] Underfull \hbox (badness 2401) in paragraph at lines 44932--44936 []\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [692] [693] [694] Underfull \hbox (badness 2111) in paragraph at lines 45139--45144 \T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n ot empty, these are used as col-umn names. Underfull \hbox (badness 10000) in paragraph at lines 45160--45165 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m /n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is [695] [696] [697] [698] Underfull \hbox (badness 4001) in paragraph at lines 45385--45387 []\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/n/10 https : / / developer . [699] [700] [701] [702] [703] Underfull \hbox (badness 5417) in paragraph at lines 45750--45754 []\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [704] Underfull \hbox (badness 10000) in paragraph at lines 45811--45815 []\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard ' reg-exps, in-clud-ing el-e-ments named [705] [706]) (./compiler-pkg.tex Chapter 2. [707] [708] [709] [710]) (./datasets-pkg.tex Chapter 3. [711] [712] [713] [714] [715] [716] [717] [718] [719] [720] [721] [722] [723] [724] [725] [726] [727] Underfull \hbox (badness 1097) in paragraph at lines 1037--1041 []\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th e iden-ti-fi-ca-tion of crim-i-nals. [728] [729] [730] [731] [732] [733] [734] [735] [736] [737] [738] [739] [740] [741] [742] [743] [744] [745] [746] [747] [748] [749] [750] [751] [752] [753] [754] [755] [756] [757] [758] [759] [760] [761] [762] [763] [764] [765] [766] [767] [768] [769] [770] [771] [772] [773] [774] [775] [776] [777] [778] [779] [780] [781] [782] [783] [784] [785] [786] [787] [788] [789] [790] [791] [792] [793]) (./grDevices-pkg.tex [794] Chapter 4. [795] [796] [797] [798] [799] Underfull \hbox (badness 3158) in paragraph at lines 282--286 []\T1/ptm/m/n/10 numeric vec-tor of length 3, \T1/zi4/m/n/10 c(mi,ma,n.)\T1/ptm /m/n/10 , with iden-ti-cal mean-ing to Underfull \hbox (badness 10000) in paragraph at lines 298--303 []\T1/ptm/m/n/10 Apart from that, [][]\T1/zi4/m/n/10 axisTicks[][][]() \T1/ptm/ m/n/10 just calls the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/ptm/m/n/1 0 in Underfull \hbox (badness 1852) in paragraph at lines 298--303 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 /src/main/plot.c\T1/ptm/m/n/10 ' which is also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack-age func-t ion [800] [801] [802] [803] [804] [805] [806] [807] [808] [809] Underfull \hbox (badness 1424) in paragraph at lines 898--900 [][][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) and \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 mean trans-par-ent, which can also be spec-i -fied as [810] [811] [812] [813] Underfull \hbox (badness 5175) in paragraph at lines 1192--1194 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [814] [815] Underfull \hbox (badness 2512) in paragraph at lines 1311--1313 []\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/n/10 https : / / web . arc hive . org / web / 20190613001950 / http : / / efg2 . com / [816] [817] Underfull \hbox (badness 1852) in paragraph at lines 1405--1408 []\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col- ors that will be used in plot-ting, call-ing [818] [819] [820] Underfull \hbox (badness 1490) in paragraph at lines 1611--1616 \T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\ T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/ 10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and [821] [822] [823] [824] [825] [826] Underfull \hbox (badness 1325) in paragraph at lines 2017--2027 \T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/ 10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1 /ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 , [827] [828] Underfull \hbox (badness 10000) in paragraph at lines 2129--2131 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [829] [830] [831] Underfull \hbox (badness 6758) in paragraph at lines 2308--2311 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [832] [833] [834] [835] [836] [837] [838] [839] [840] [841] Underfull \hbox (badness 10000) in paragraph at lines 2919--2920 [842] [843] [844] [845] [846] [847] [848] [849] [850] Underfull \hbox (badness 10000) in paragraph at lines 3493--3498 []\T1/zi4/m/n/10 nclass.FD \T1/ptm/m/n/10 uses the Freedman-Diaconis choice bas ed on the inter-quartile range [851] [852] [853] Underfull \vbox (badness 3803) has occurred while \output is active [854] [855] [856] [857] Underfull \vbox (badness 3803) has occurred while \output is active [858] Underfull \hbox (badness 10000) in paragraph at lines 3992--3995 []\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv e a C in-te-ger for-mat such as [859] [860] [861] [862] [863] [864] [865] [866] [867] [868] [869] Underfull \hbox (badness 10000) in paragraph at lines 4732--4737 [][][]$\T1/zi4/m/n/10 https : / / www . adobe . com / content / dam / acom / en / devnet / actionscript / articles / PLRM . pdf$[][] Underfull \hbox (badness 10000) in paragraph at lines 4732--4737 \T1/ptm/m/n/10 or PDF [][]$\T1/zi4/m/n/10 https : / / www . adobe . com / conte nt / dam / acom / en / devnet / acrobat / pdfs / pdf _ Underfull \hbox (badness 1881) in paragraph at lines 4732--4737 \T1/zi4/m/n/10 reference _ 1-[]7 . pdf$[][] \T1/ptm/m/n/10 and in dec-i-mal, oc -tal and hex at [][]$\T1/zi4/m/n/10 https : / / www . stat . auckland . ac . [870] [871] [872] Underfull \hbox (badness 1584) in paragraph at lines 4888--4890 []\T1/ptm/m/n/10 For type \T1/zi4/m/n/10 "cairo"\T1/ptm/m/n/10 , the \T1/zi4/m/ n/10 symbolfamily \T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See Underfull \hbox (badness 1067) in paragraph at lines 4892--4899 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [873] [874] [875] [876] Underfull \hbox (badness 1377) in paragraph at lines 5198--5203 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [877] Underfull \hbox (badness 1418) in paragraph at lines 5274--5281 \T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4 /m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/ zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm /m/n/10 , [878] Underfull \hbox (badness 1755) in paragraph at lines 5292--5294 []\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East Asian lan-guages -- see [879] Underfull \hbox (badness 1377) in paragraph at lines 5403--5408 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \ T1/zi4/m/n/10 "rgb" \T1/ptm/m/n/10 (which is RGB+gray) and [880] Underfull \hbox (badness 7344) in paragraph at lines 5472--5474 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [881] Underfull \vbox (badness 3803) has occurred while \output is active [882] Underfull \hbox (badness 2035) in paragraph at lines 5610--5619 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5610--5619 \T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/ n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 5610--5619 \T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 , [883] [884] Underfull \hbox (badness 10000) in paragraph at lines 5678--5680 []\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4 /m/n/10 https : / / ftp . gnu . org / pub / non-[]gnu / [885] [886] Underfull \hbox (badness 1546) in paragraph at lines 5820--5828 []\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T 1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/ n/10 , [887] [888] [889] [890] [891] [892] [893] [894] Underfull \hbox (badness 10000) in paragraph at lines 6358--6361 []\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red /green/blue) into HSV space [895] [896] Underfull \vbox (badness 3803) has occurred while \output is active [897] [898] [899] [900] [901] [902] [903] [904] [905] [906] [907] [908] Underfull \hbox (badness 1189) in paragraph at lines 7184--7186 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [909] Underfull \hbox (badness 10000) in paragraph at lines 7289--7291 []\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK lan-guages and [910] [911] [912] [913] [914] Underfull \hbox (badness 3780) in paragraph at lines 7603--7609 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1 0 "AvantGarde"\T1/ptm/m/n/10 , [915] [916] [917] Underfull \hbox (badness 2680) in paragraph at lines 7805--7807 []\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of [918] [919] [920]) (./graphics-pkg.tex Chapter 5. [921] [922] [923] [924] [925] [926] [927] [928] [929] [930] [931] [932] [933] [934] [935] [936] Overfull \hbox (12.71341pt too wide) in paragraph at lines 981--981 [] \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = " # {passengers}", legend.text = TRUE)[] [937] [938] [939] [940] [941] [942] Underfull \hbox (badness 4634) in paragraph at lines 1355--1358 [][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n /10 , [943] [944] [945] [946] [947] [948] [949] [950] [951] [952] [953] [954] [955] [956] [957] [958] [959] Underfull \hbox (badness 1728) in paragraph at lines 2333--2335 []\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use \T1/zi4/m/n/10 "n " \T1/ptm/m/n/10 to sup-press and see also [960] Underfull \hbox (badness 1009) in paragraph at lines 2426--2433 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [961] [962] [963] [964] [965] [966] [967] [968] [969] [970] [971] [972] [973] [974] [975] [976] [977] [978] [979] [980] [981] [982] Underfull \vbox (badness 10000) has occurred while \output is active [983] Underfull \vbox (badness 10000) has occurred while \output is active [984] [985] [986] [987] [988] [989] [990] [991] [992] [993] [994] [995] Underfull \hbox (badness 3229) in paragraph at lines 4602--4607 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used, see [996] [997] [998] [999] [1000] Underfull \hbox (badness 10000) in paragraph at lines 5032--5038 []\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n /10 (width,height) \T1/ptm/m/n/10 in user co-or-di-nate units. Underfull \hbox (badness 5908) in paragraph at lines 5032--5038 \T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin" ) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that [1001] [1002] Underfull \hbox (badness 10000) in paragraph at lines 5163--5166 [1003 >/library/graphics/help/figures//mai.pdf >] Underfull \hbox (badness 10000) in paragraph at lines 5224--5226 Underfull \vbox (badness 10000) has occurred while \output is active [1004] [1005 >/library/graphics/help/figures//oma.pdf >] [1006] Underfull \hbox (badness 10000) in paragraph at lines 5414--5416 []\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2 :6\T1/ptm/m/n/10 ) cor-re-spond to [1007] Underfull \vbox (badness 3803) has occurred while \output is active [1008] [1009] [1010] [1011] [1012] [1013] [1014]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.plot}) has been already used, duplicate ignored \relax l.5896 \aliasA{plot}{plot.default}{plot} [1015] [1016] [1017] [1018] [1019] [1020] [1021] [1022] [1023] [1024] [1025] [1026] [1027] [1028] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6801--6802 [][] [1029 >/library/graphics/help/figures//pch.pdf >] [1030] Underfull \vbox (badness 3803) has occurred while \output is active [1031] [1032] [1033] [1034] [1035] [1036] [1037] [1038] [1039] [1040] [1041] [1042] Underfull \hbox (badness 2012) in paragraph at lines 7623--7626 []\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d rawn be-tween the point \T1/zi4/m/n/10 (x0[i],y0[i]) \T1/ptm/m/n/10 and the poi nt [1043] [1044] [1045] [1046] [1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] [1055] [1056] [1057] [1058] [1059] [1060] [1061] [1062] [1063] Underfull \hbox (badness 10000) in paragraph at lines 8889--8891 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color Underfull \hbox (badness 10000) in paragraph at lines 8891--8893 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color [1064]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.uni ts}) has been already used, duplicate ignored \relax l.8971 \HeaderA{units}{Graphical Units}{units} [1065] [1066] [1067] [1068]) (./grid-pkg.tex Chapter 6. [1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] Underfull \hbox (badness 2680) in paragraph at lines 486--489 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1 /zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio n of [1077] [1078] [1079] [1080] [1081] [1082] [1083] [1084] [1085] [1086] [1087] Underfull \hbox (badness 4279) in paragraph at lines 1112--1121 [][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m /n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 unit[][][]\T1/ptm/m/n/10 , [1088] [1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100] [1101] [1102] [1103] [1104] [1105] [1106] [1107] [1108] [1109] [1110] [1111] [1112] [1113] [1114] [1115] [1116] [1117] [1118] [1119] [1120] [1121] [1122] [1123] [1124] [1125] [1126] [1127] [1128] [1129] [1130] [1131] [1132] [1133] [1134] [1135] [1136] [1137] [1138] [1139] [1140] [1141] [1142] [1143] [1144] [1145] [1146] Underfull \hbox (badness 1067) in paragraph at lines 4537--4540 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1147] [1148] [1149] [1150] Underfull \hbox (badness 7256) in paragraph at lines 4782--4784 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1151] [1152] [1153] [1154] [1155] [1156] [1157] [1158] [1159] [1160] [1161] [1162] [1163] [1164] [1165] [1166] [1167] [1168] [1169] [1170] [1171] [1172] [1173] [1174] [1175] [1176] [1177] [1178] [1179] [1180] [1181] [1182] [1183] [1184] Underfull \hbox (badness 1824) in paragraph at lines 6753--6756 []\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by do-ing some-thing like \T1/zi4/m/n/10 depth [1185] [1186] [1187] [1188]) (./methods-pkg.tex Chapter 7. [1189] [1190] [1191] [1192] [1193] [1194] [1195] [1196] Underfull \vbox (badness 10000) has occurred while \output is active [1197] Underfull \vbox (badness 10000) has occurred while \output is active [1198] [1199] [1200] [1201] [1202] [1203] [1204] [1205] [1206] [1207] Underfull \hbox (badness 2237) in paragraph at lines 1385--1387 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \ T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package "\T1/ptm/m/n/10 , also of class [1208] [1209] [1210] [1211] [1212] [1213] [1214] [1215] Underfull \hbox (badness 2181) in paragraph at lines 1932--1939 []\T1/ptm/m/n/10 Two vir-tual classes are sup-plied to test for ref-er-ence ob- jects: \T1/zi4/m/n/10 is(x,"refClass") \T1/ptm/m/n/10 tests [1216] Underfull \hbox (badness 10000) in paragraph at lines 1981--1986 []\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c an be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1981--1986 \T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1 0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the [1217] [1218] [1219] Underfull \hbox (badness 2213) in paragraph at lines 2214--2219 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use \T1/zi4/m/n/10 where = [1220] [1221] [1222] [1223] [1224] Underfull \hbox (badness 10000) in paragraph at lines 2574--2577 []\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o b-jects of class [1225] [1226] Underfull \hbox (badness 1132) in paragraph at lines 2714--2718 []\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1 0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re -turned re-sult is in [1227] Underfull \hbox (badness 1033) in paragraph at lines 2746--2751 \T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store s the [1228] [1229] [1230] [1231] [1232] [1233] [1234] Underfull \hbox (badness 1102) in paragraph at lines 3303--3305 []\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na me of the pack-age (with-out the ex-tra-ne-ous [1235] [1236] [1237] [1238] [1239] Underfull \hbox (badness 10000) in paragraph at lines 3634--3639 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these classes takes spe-cial ar-gu-ments [1240] Underfull \hbox (badness 10000) in paragraph at lines 3642--3651 []\T1/ptm/m/n/10 The [1241] Underfull \hbox (badness 10000) in paragraph at lines 3762--3763 [] \T1/zi4/m/n/10 Pos <-setClass("Pos",slots = c(latitude = "numeric",longitude = "numeric",altitude [1242] [1243] [1244] [1245] [1246] [1247] [1248] [1249] [1250] [1251] [1252] Underfull \hbox (badness 1769) in paragraph at lines 4472--4478 []\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4472--4478 \T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T 1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by [1253] [1254] [1255] [1256] [1257] [1258] [1259] [1260] [1261] [1262] Underfull \vbox (badness 10000) has occurred while \output is active [1263] [1264] [1265] Underfull \hbox (badness 4036) in paragraph at lines 5437--5440 []\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10 the method to use in re-sponse to a [1266] Underfull \hbox (badness 3803) in paragraph at lines 5512--5514 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1267] [1268] [1269] [1270] Underfull \hbox (badness 1087) in paragraph at lines 5744--5749 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] Underfull \hbox (badness 1675) in paragraph at lines 6451--6457 \T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1279] [1280] [1281] [1282] Underfull \vbox (badness 10000) has occurred while \output is active [1283] [1284] [1285] [1286]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has been already used, duplicate ignored \relax l.6973 \aliasA{S4}{S3Part}{S4} [1287] [1288] [1289]pdfTeX warning (ext4): desti nation with the same identifier (name{Rfn.Complex}) has been already used, dupl icate ignored \relax l.7229 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate ignored \relax l.7231 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) has been already used, duplicate igno red \relax l.7232 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination wi th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7234 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor ed \relax l.7235 \aliasA{Summary}{S4groupGeneric}{Summary} [1290] Underfull \hbox (badness 2050) in paragraph at lines 7296--7300 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1291] [1292] [1293] Underfull \hbox (badness 1286) in paragraph at lines 7484--7486 []\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal ly [1294] [1295] [1296] [1297] [1298] [1299] [1300] [1301] [1302] [1303] [1304] [1305] [1306] [1307] [1308] [1309] [1310] [1311] [1312] [1313] [1314] [1315] [1316] [1317] [1318] [1319] [1320] Underfull \vbox (badness 10000) has occurred while \output is active [1321] [1322] [1323] [1324] [1325] [1326] [1327] [1328] Underfull \hbox (badness 1137) in paragraph at lines 10011--10019 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/n/10 ne w("signature",functionDef,...)\T1/ptm/m/n/10 . The [1329] [1330] [1331] [1332] [1333] [1334] [1335] Underfull \hbox (badness 1852) in paragraph at lines 10564--10568 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1336] [1337] [1338] [1339]) (./parallel-pkg.tex [1340] Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4 /m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[ ][][]: see [1341] [1342] [1343] [1344] [1345] Underfull \hbox (badness 1320) in paragraph at lines 300--303 []\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, So-laris and Win-dows. [1346] [1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355] [1356] [1357] [1358] [1359] [1360] [1361] [1362] Underfull \hbox (badness 3386) in paragraph at lines 1401--1404 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R andom.seed \T1/ptm/m/n/10 when the [1363] [1364] [1365]) (./splines-pkg.tex [1366] Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] [1377] [1378] [1379] [1380] [1381] [1382]) (./stats-pkg.tex Chapter 10. [1383] [1384] [1385] [1386] [1387] [1388] [1389] [1390] [1391] [1392] [1393] [1394] [1395] [1396] Underfull \hbox (badness 1412) in paragraph at lines 882--884 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm \T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for [1397] [1398] [1399] [1400] [1401] [1402] [1403] [1404] Underfull \hbox (badness 2503) in paragraph at lines 1364--1367 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1405] [1406] [1407] Underfull \hbox (badness 10000) in paragraph at lines 1544--1548 []\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov","lm") \T1/ptm/m/n/1 0 or for mul-ti-ple re-sponses of class [1408] [1409] [1410] [1411] [1412] [1413] [1414] [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] [1423] [1424] [1425] [1426] [1427] [1428] [1429] [1430] [1431] [1432] [1433] [1434] [1435] [1436] [1437] [1438] Underfull \hbox (badness 2503) in paragraph at lines 3514--3517 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1439] [1440] [1441] [1442] [1443] [1444] [1445] [1446] [1447] [1448] [1449] [1450] [1451] [1452] [1453] Underfull \hbox (badness 1127) in paragraph at lines 4430--4433 []\T1/ptm/m/n/10 standardized resid-u-als, \T1/zi4/m/n/10 (observed -expected) / sqrt(V)\T1/ptm/m/n/10 , where \T1/zi4/m/n/10 V \T1/ptm/m/n/10 is the [1454] [1455] [1456] [1457] [1458] Underfull \hbox (badness 3989) in paragraph at lines 4770--4777 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468] Underfull \hbox (badness 2556) in paragraph at lines 5406--5409 []\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/ ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p tm/m/n/10 . For Underfull \hbox (badness 2932) in paragraph at lines 5423--5425 []\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se- quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is given by [1469] [1470] [1471] [1472] [1473] [1474] [1475] Underfull \hbox (badness 2503) in paragraph at lines 5820--5824 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1476] [1477] [1478] [1479] [1480] [1481] [1482] [1483] [1484] [1485] [1486] [1487] [1488] Underfull \hbox (badness 7081) in paragraph at lines 6614--6617 []\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 10000) in paragraph at lines 6618--6620 []\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also [1489] [1490] [1491] [1492] [1493] Underfull \vbox (badness 3803) has occurred while \output is active [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] Underfull \hbox (badness 10000) in paragraph at lines 7465--7468 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T 1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the [1502] [1503] [1504] [1505] [1506] [1507] [1508] [1509] [1510] [1511] [1512] [1513] [1514] [1515] [1516] [1517] [1518] [1519] [1520] [1521] [1522] [1523] Underfull \vbox (badness 10000) has occurred while \output is active [1524] [1525] [1526] [1527] [1528] Underfull \hbox (badness 2626) in paragraph at lines 9144--9147 []\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1529] [1530] Underfull \hbox (badness 2503) in paragraph at lines 9251--9255 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1531] [1532] [1533] [1534] [1535] [1536] [1537] [1538] [1539] [1540] [1541] [1542] [1543] [1544] [1545] [1546] [1547] [1548] [1549] [1550] Underfull \hbox (badness 4518) in paragraph at lines 10587--10592 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1551] [1552] [1553] [1554] [1555] Underfull \hbox (badness 2142) in paragraph at lines 10948--10951 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ [1556] Underfull \hbox (badness 1253) in paragraph at lines 10967--10970 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][ ]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it- er-a-tion. Hence, [1557] Underfull \hbox (badness 1708) in paragraph at lines 11029--11033 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1558] [1559] [1560] [1561] [1562] [1563] Underfull \hbox (badness 1694) in paragraph at lines 11425--11428 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1564] [1565] [1566] [1567] [1568] [1569] [1570] [1571]pdfTeX warning (ext4): d estination with the same identifier (name{Rfn.hat}) has been already used, dupl icate ignored \relax l.11909 \aliasA{hat}{influence.measures}{hat} [1572] [1573] Underfull \hbox (badness 1484) in paragraph at lines 12051--12053 []\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1574] [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] Underfull \hbox (badness 10000) in paragraph at lines 12650--12652 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa ult[][][] \T1/ptm/m/n/10 when \T1/zi4/m/n/10 SSinit = [1584] [1585] [1586] [1587] [1588] [1589] Underfull \hbox (badness 2894) in paragraph at lines 12986--12990 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1590] [1591] [1592] [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601] Underfull \hbox (badness 4518) in paragraph at lines 13737--13742 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1602] [1603] [1604] [1605] [1606] [1607] [1608] [1609] [1610] Underfull \hbox (badness 4518) in paragraph at lines 14390--14395 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1611] [1612] [1613] Underfull \hbox (badness 8151) in paragraph at lines 14528--14532 []\T1/ptm/m/n/10 Only for the (de-fault) case \T1/zi4/m/n/10 (surface = "interp olate",statistics = Underfull \hbox (badness 1199) in paragraph at lines 14535--14537 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if \T1/zi4/m/n/10 family \T1/ptm/m/n/10 is [1614] [1615] [1616] [1617] [1618] [1619] [1620] [1621] [1622] [1623] [1624] [1625] [1626] [1627] [1628] [1629] [1630] [1631] Underfull \hbox (badness 2503) in paragraph at lines 15611--15615 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1632] [1633] [1634] [1635] [1636] [1637] [1638] [1639] Underfull \hbox (badness 10000) in paragraph at lines 16124--16130 []\T1/zi4/m/n/10 model.extract(m,"offset") \T1/ptm/m/n/10 and \T1/zi4/m/n/10 mo del.extract(m,"response") \T1/ptm/m/n/10 are equiv-a-lent to Underfull \hbox (badness 1867) in paragraph at lines 16124--16130 \T1/zi4/m/n/10 model.offset(m) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response (m) \T1/ptm/m/n/10 re-spec-tively. \T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 s ums any terms [1640] [1641] [1642] [1643] [1644] [1645] [1646] [1647] [1648] [1649] [1650] [1651] [1652] [1653] [1654] [1655] [1656] [1657] [1658] [1659] [1660] [1661] [1662] [1663] [1664] [1665] Underfull \hbox (badness 1158) in paragraph at lines 17767--17770 []\T1/ptm/m/n/10 the ex-pres-sion that was passed to \T1/zi4/m/n/10 nls \T1/ptm /m/n/10 as the data ar-gu-ment. The ac- [1666] [1667] Underfull \vbox (badness 3803) has occurred while \output is active [1668] Underfull \vbox (badness 10000) has occurred while \output is active [1669] Underfull \vbox (badness 10000) has occurred while \output is active [1670] [1671] [1672] [1673] [1674] [1675] [1676] [1677] [1678] [1679] [1680] [1681] [1682] [1683] Underfull \hbox (badness 1377) in paragraph at lines 18790--18795 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 18795--18798 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 2343) in paragraph at lines 18808--18812 []\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i t is un-able to re-duce Underfull \hbox (badness 3471) in paragraph at lines 18808--18812 \T1/ptm/m/n/10 the value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + re ltol) \T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 18816--18820 []\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \ T1/ptm/m/n/10 meth-ods if [1684] [1685] [1686] Underfull \vbox (badness 10000) has occurred while \output is active [1687] Overfull \hbox (15.73795pt too wide) in paragraph at lines 19041--19041 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Overfull \hbox (3.75941pt too wide) in paragraph at lines 19044--19044 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1688] [1689] [1690] [1691] [1692] [1693] [1694] Underfull \hbox (badness 1337) in paragraph at lines 19503--19506 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1695] [1696] [1697] [1698] [1699] [1700] [1701] [1702] [1703] Underfull \hbox (badness 3049) in paragraph at lines 20001--20005 []\T1/ptm/m/n/10 In the Cook's dis-tance vs leverage/(1-leverage) plot, con-tou rs of stan-dard-ized resid-u-als [1704] [1705] [1706] [1707] Underfull \hbox (badness 1194) in paragraph at lines 20264--20267 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1708] [1709] [1710] [1711] [1712] [1713] [1714] Underfull \hbox (badness 2503) in paragraph at lines 20643--20646 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , Underfull \hbox (badness 3919) in paragraph at lines 20670--20672 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1 /ptm/m/n/10 or \T1/zi4/m/n/10 "Comparison of Poisson [1715] [1716] [1717] [1718] [1719] [1720] [1721] [1722] [1723] [1724] [1725] [1726] [1727] [1728] [1729] [1730] [1731] [1732] Underfull \hbox (badness 10000) in paragraph at lines 21748--21754 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][ ][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 , [1733] [1734] [1735] [1736] [1737] [1738] [1739] [1740] [1741] [1742] [1743] [1744] [1745] [1746] [1747] [1748] [1749] [1750] [1751] [1752] [1753] [1754] [1755] Underfull \hbox (badness 1337) in paragraph at lines 23105--23111 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1756] [1757] [1758] [1759] [1760] [1761] [1762] Underfull \hbox (badness 3780) in paragraph at lines 23530--23533 []\T1/ptm/m/n/10 used only when \T1/zi4/m/n/10 names \T1/ptm/m/n/10 is true: th e pre-ci-sion to use when for-mat- Underfull \hbox (badness 1152) in paragraph at lines 23530--23533 \T1/ptm/m/n/10 ting the per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-s ions up to 4.0.x, this had been set to [1763] Underfull \hbox (badness 10000) in paragraph at lines 23671--23672 []\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . or g / wiki / Quantile # Estimating _ quantiles _ from _ a _ [1764] [1765] [1766] [1767] [1768] Underfull \hbox (badness 10000) in paragraph at lines 23955--23958 []\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by Underfull \hbox (badness 4205) in paragraph at lines 23955--23958 \T1/zi4/m/n/10 cutree(hclust.obj,k = k)\T1/ptm/m/n/10 , can be spec-i-fied for ef-fi-ciency if al-ready [1769] [1770] [1771] [1772] [1773] [1774] [1775] [1776] [1777] [1778] [1779] Underfull \hbox (badness 1824) in paragraph at lines 24632--24638 []\T1/ptm/m/n/10 Here, all the NAs in \T1/zi4/m/n/10 x \T1/ptm/m/n/10 are first re-placed by al-ter- Underfull \hbox (badness 1033) in paragraph at lines 24632--24638 \T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/ m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where [1780] Underfull \hbox (badness 10000) in paragraph at lines 24653--24656 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run med(x,k) \T1/ptm/m/n/10 sim-ply has \T1/zi4/m/n/10 y[j] = Underfull \hbox (badness 3690) in paragraph at lines 24722--24726 [][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's end point rule and is called by de-fault from [1781] Underfull \vbox (badness 3803) has occurred while \output is active [1782] [1783] [1784] [1785] [1786] [1787] [1788] [1789] Underfull \hbox (badness 2165) in paragraph at lines 25234--25239 []\T1/ptm/m/n/10 Each of the fol-low-ing are \T1/zi4/m/n/10 "selfStart" \T1/ptm /m/n/10 mod-els (with ex-am-ples) [][]\T1/zi4/m/n/10 SSasymp[][][]\T1/ptm/m/n/1 0 , [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [1790] [1791] [1792] [1793] Underfull \hbox (badness 1867) in paragraph at lines 25439--25441 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 25454--25458 []\T1/ptm/m/n/10 where \T1/zi4/m/n/10 NN <-[][]nobs[][][](object,use.fallback = use.fallback) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 PP [1794] [1795] [1796] [1797] [1798] [1799] [1800] [1801] [1802] [1803] [1804] [1805] [1806] [1807] [1808] [1809] [1810] [1811] [1812] [1813] [1814] [1815] [1816] [1817] Underfull \vbox (badness 10000) has occurred while \output is active [1818] Underfull \hbox (badness 3514) in paragraph at lines 27017--27022 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1819] [1820] [1821] [1822] Overfull \hbox (2.23795pt too wide) in paragraph at lines 27251--27251 [] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] [1823] Underfull \hbox (badness 3514) in paragraph at lines 27287--27293 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1824] Overfull \hbox (20.23795pt too wide) in paragraph at lines 27344--27344 []\T1/zi4/m/n/9 fmX1 <- nls(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), data = d atN, control = list(scaleOffset=1))[] Overfull \hbox (11.22874pt too wide) in paragraph at lines 27346--27346 [] \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=1 e-11, nDcentral=TRUE), trace=TRUE)[] [1825] [1826] [1827] Underfull \hbox (badness 3514) in paragraph at lines 27520--27525 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1828] [1829] Underfull \hbox (badness 3514) in paragraph at lines 27607--27612 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1830] Underfull \hbox (badness 3514) in paragraph at lines 27672--27677 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1831] [1832] Underfull \hbox (badness 3514) in paragraph at lines 27766--27771 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1833] Underfull \hbox (badness 6691) in paragraph at lines 27858--27863 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p tm/m/n/10 . It is the value of the ex-pres-sion [1834] [1835] [1836] [1837] [1838] [1839] [1840] [1841] Underfull \hbox (badness 4024) in paragraph at lines 28349--28352 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion , which [1842] [1843] [1844] [1845] [1846] [1847] [1848] [1849] [1850] [1851] Underfull \hbox (badness 5431) in paragraph at lines 28955--28957 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1852] [1853] [1854] [1855] Underfull \hbox (badness 5431) in paragraph at lines 29165--29168 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1856] [1857] [1858] [1859] [1860] Underfull \hbox (badness 1337) in paragraph at lines 29480--29484 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1861] [1862] [1863] [1864] [1865] Underfull \hbox (badness 1616) in paragraph at lines 29792--29795 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1866] [1867] [1868] [1869] [1870] [1871] [1872] [1873] [1874] [1875] [1876] [1877] [1878] [1879] [1880] [1881] [1882] [1883] [1884] Underfull \hbox (badness 3557) in paragraph at lines 30927--30931 []\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect \T1/zi4 /m/n/10 interval = [1885] [1886] [1887] Underfull \vbox (badness 10000) has occurred while \output is active [1888] [1889] [1890] Underfull \hbox (badness 1337) in paragraph at lines 31291--31295 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1891] [1892] [1893] [1894] [1895] [1896] [1897] [1898] [1899] Underfull \hbox (badness 1337) in paragraph at lines 31820--31824 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of Underfull \hbox (badness 10000) in paragraph at lines 31834--31836 []\T1/ptm/m/n/10 (when \T1/zi4/m/n/10 conf.int \T1/ptm/m/n/10 is true:) a pos-i -tive nu-meric tol-er-ance, used in [1900] [1901] [1902] Overfull \hbox (0.71648pt too wide) in paragraph at lines 32027--32027 []\T1/zi4/m/n/9 wilcox.test( 4:2, 3:1, paired=TRUE) # Warning: canno t compute exact p-value with ties[] [1903] [1904] [1905] Overfull \hbox (19.71954pt too wide) in paragraph at lines 32188--32188 [] \T1/zi4/m/n/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.eps = getOption("ts.eps"), ...)[] [1906] [1907] [1908] [1909] [1910]) (./stats4-pkg.tex Chapter 11. [1911] [1912] [1913] Underfull \vbox (badness 10000) has occurred while \output is active [1914] Underfull \vbox (badness 10000) has occurred while \output is active [1915] [1916] [1917] [1918]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.show.Rdash.methods}) has been already used, duplicate ignored \relax l.503 ...Package \pkg{stats4}}{show.Rdash.methods} [1919] [1920] [1921]) (./tcltk-pkg.tex [1922] Chapter 12. [1923] [1924] [1925] [1926] [1927] [1928] [1929] Underfull \vbox (badness 10000) has occurred while \output is active [1930] Underfull \vbox (badness 10000) has occurred while \output is active [1931] Underfull \hbox (badness 1546) in paragraph at lines 666--673 []\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing any Tk or Tcl com-mand by sim-ply run-ning [1932] [1933] [1934] [1935] [1936] Underfull \vbox (badness 10000) has occurred while \output is active [1937] [1938] [1939] [1940] [1941] [1942] [1943] [1944]) (./tools-pkg.tex Chapter 13. [1945] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1946] Underfull \hbox (badness 3039) in paragraph at lines 167--170 []\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1947] [1948] Underfull \hbox (badness 1308) in paragraph at lines 288--301 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 288--301 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 288--301 \T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 formatMastersthesis\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 288--301 \T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm /m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma tTechreport \T1/ptm/m/n/10 and [1949] [1950] Underfull \hbox (badness 3039) in paragraph at lines 392--394 []\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine to use. Over-rides any [1951] Underfull \hbox (badness 1142) in paragraph at lines 463--467 \T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s ub-di-rec-tory [1952] [1953] [1954] [1955] [1956] [1957] [1958] [1959] [1960] [1961] [1962] [1963] Underfull \hbox (badness 1014) in paragraph at lines 1174--1176 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1180--1182 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous [1964] Underfull \hbox (badness 10000) in paragraph at lines 1217--1220 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1217--1220 \T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 , [1965] [1966] [1967] [1968] [1969] Underfull \hbox (badness 2293) in paragraph at lines 1569--1571 []\T1/zi4/m/n/10 CRAN_memtest_notes() \T1/ptm/m/n/10 is now dep-re-cated, with its func-tion-al-ity in-te-grated into that of [1970] [1971] Underfull \hbox (badness 7981) in paragraph at lines 1707--1715 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of Underfull \hbox (badness 1082) in paragraph at lines 1717--1719 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see [1972] [1973] [1974] [1975]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.GSC}) has been already used, duplicate ignored \relax l.1919 \aliasA{GSC}{find\_gs\_cmd}{GSC} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ig nored \relax l.1920 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [1976] [1977] [1978] [1979] [1980] Overfull \hbox (17.27782pt too wide) in paragraph at lines 2222--2222 []\T1/zi4/m/n/9 writeLines(paste0("\\newcommand{\\logo}{\\if{html}{\\figure{Rl ogo.svg}{options: width=100}",[] [1981] [1982] [1983] Underfull \hbox (badness 7981) in paragraph at lines 2391--2399 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1984] [1985] [1986] [1987] [1988] [1989] [1990] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2885. LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2886. LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2886. [1991] [1992] [1993] [1994] [1995] Underfull \hbox (badness 1424) in paragraph at lines 3177--3179 []\T1/zi4/m/it/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t or of links, as re-turned by [1996] [1997] [1998] [1999] [2000] [2001] [2002] [2003] [2004] [2005] [2006] Underfull \hbox (badness 10000) in paragraph at lines 3878--3880 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [2007] [2008] Underfull \hbox (badness 10000) in paragraph at lines 4017--4020 []\T1/ptm/m/n/10 Where sup-ported (\T1/zi4/m/it/10 texi2dvi \T1/ptm/m/n/10 5.0 and later; \T1/zi4/m/it/10 texify.exe \T1/ptm/m/n/10 from MiK-TeX), op-tion [2009] [2010] Underfull \hbox (badness 1137) in paragraph at lines 4119--4121 []\T1/ptm/m/n/10 a ma-trix spec-i-fy-ing all pack-ages in-stalled on the lo-cal sys-tem, as from [2011] [2012] [2013] [2014] [2015] Underfull \hbox (badness 1796) in paragraph at lines 4427--4432 []\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over \T 1/zi4/m/it/10 write_PACKAGES \T1/ptm/m/n/10 in the \T1/zi4/m/it/10 type == [2016] Underfull \hbox (badness 1838) in paragraph at lines 4501--4507 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/it/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4501--4507 \T1/ptm/m/n/10 `\T1/zi4/m/it/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [2017] [2018] [2019] [2020] Underfull \hbox (badness 2197) in paragraph at lines 4776--4786 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][]\T1/zi4 /m/it/10 available.packages[][][]\T1/ptm/m/n/10 : [2021] Underfull \hbox (badness 1571) in paragraph at lines 4842--4846 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [2022] [2023] [2024]) (./utils-pkg.tex Chapter 14. [2025] Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/it/10 insertions\T1/ptm/m/n/10 ', [2026] [2027] [2028] [2029] [2030] Underfull \hbox (badness 10000) in paragraph at lines 378--383 \T1/zi4/m/it/10 c("vertical","horizontal","cascade","minimize","restore") \T1/p tm/m/n/10 with [2031] [2032] [2033] [2034] [2035] Underfull \hbox (badness 10000) in paragraph at lines 720--726 []\T1/ptm/m/n/10 Functions \T1/zi4/m/it/10 aspell_package_Rd_files\T1/ptm/m/n/1 0 , \T1/zi4/m/it/10 aspell_package_vignettes\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 720--726 \T1/zi4/m/it/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/it/10 aspel l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the [2036] [2037] Underfull \hbox (badness 5847) in paragraph at lines 857--863 []\T1/ptm/m/n/10 Argument \T1/zi4/m/it/10 filters \T1/ptm/m/n/10 can be used to se-lect which of the pack-ages on the repos-i-to- Underfull \hbox (badness 4229) in paragraph at lines 857--863 \T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi 4/m/it/10 NULL\T1/ptm/m/n/10 ) by func-tions such as [2038] Underfull \hbox (badness 3861) in paragraph at lines 925--930 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/it/10 "O S_type"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/it/ 10 "License_is_FOSS"\T1/ptm/m/n/10 , [2039] [2040] [2041] Underfull \hbox (badness 3323) in paragraph at lines 1108--1116 []\T1/ptm/m/n/10 (\T1/ptm/m/it/10 deprecated\T1/ptm/m/n/10 , use \T1/zi4/m/it/1 0 bibtex = T|F \T1/ptm/m/n/10 in-stead!) a num-ber, say $\OML/cmm/m/it/10 m$\T1 /ptm/m/n/10 , in-di-cat- Underfull \hbox (badness 2961) in paragraph at lines 1108--1116 \T1/ptm/m/n/10 ing that the bib-tex code should be given in ad-di-tion to the f or-mat- Underfull \hbox (badness 3919) in paragraph at lines 1108--1116 \T1/ptm/m/n/10 ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not more t han $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is Underfull \hbox (badness 3735) in paragraph at lines 1108--1116 \T1/ptm/m/n/10 taken as [][]\T1/zi4/m/it/10 getOption[][][]("citation.bibtex.ma x",1) \T1/ptm/m/n/10 which is \T1/zi4/m/it/10 1 \T1/ptm/m/n/10 typ-i-cally. Underfull \hbox (badness 1817) in paragraph at lines 1108--1116 \T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f ault by Underfull \hbox (badness 10000) in paragraph at lines 1120--1122 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [2042] [2043] [2044] [2045] [2046] [2047] [2048] [2049] Underfull \hbox (badness 1371) in paragraph at lines 1625--1627 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/it/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/it/10 ccaddress \T1/ptm/m/n/10 to pass to [2050] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 1695. [2051] [2052] [2053] [2054] [2055] [2056] [2057] [2058] [2059] [2060] Underfull \hbox (badness 2057) in paragraph at lines 2346--2348 []\T1/ptm/m/n/10 None for \T1/zi4/m/it/10 chooseCRANmirror()\T1/ptm/m/n/10 , th is func-tion is in-voked for its side ef-fect of up-dat-ing [2061] [2062] [2063] [2064] [2065] [2066]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.clipboard}) has been already used, duplicate ig nored \relax l.2697 ... the Clipboard in MS Windows}{clipboard} [2067] [2068] [2069] Underfull \hbox (badness 1748) in paragraph at lines 2864--2867 []\T1/ptm/m/n/10 A [][]\T1/zi4/m/it/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4 /m/it/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/it/10 simplify \T1/ptm/m /n/10 ar-gu-ment above. In the lat-ter case, the iden-tity [2070] [2071] [2072] [2073] [2074] [2075] Underfull \hbox (badness 5388) in paragraph at lines 3274--3278 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/it/10 .tab\T1/ptm/m/n/10 ', `\T1/zi4/ m/it/10 .txt\T1/ptm/m/n/10 ' or `\T1/zi4/m/it/10 .TXT\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/it/10 read.table[][][](...,header = Underfull \hbox (badness 2285) in paragraph at lines 3279--3282 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/it/10 .csv\T1/ptm/m/n/10 ' or `\T1/zi 4/m/it/10 .CSV\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/it/10 read.table[] [][](...,header = TRUE,sep = [2076] [2077] [2078] [2079] [2080] [2081] [2082] [2083] [2084] [2085] [2086] [2087] Underfull \hbox (badness 1430) in paragraph at lines 4063--4071 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the \T1/zi4/m/it/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the [2088] Underfull \hbox (badness 1231) in paragraph at lines 4140--4152 []\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers via en-vi-ron-ment vari-able [2089] [2090] Underfull \hbox (badness 10000) in paragraph at lines 4297--4299 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][]\T1/zi4/m/it/10 dow nload.file[][][] \T1/ptm/m/n/10 and [2091] [2092] [2093] [2094] [2095] [2096] [2097] [2098] [2099] [2100] [2101]pdf TeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.4995 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.format.1}) has been already used, dupl icate ignored \relax l.4995 ...mat Unordered and Ordered Lists}{format} [2102] [2103] [2104] [2105] [2106] [2107] [2108] [2109] Underfull \hbox (badness 1622) in paragraph at lines 5514--5518 []\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing to ex-ter-nal GUIs or to the [2110] [2111] [2112] [2113] [2114] [2115] [2116] [2117] Underfull \vbox (badness 3803) has occurred while \output is active [2118] [2119] [2120] [2121] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 6232. Underfull \hbox (badness 1371) in paragraph at lines 6236--6238 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/it/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/it/10 ccaddress \T1/ptm/m/n/10 to pass to [2122] Underfull \hbox (badness 1502) in paragraph at lines 6325--6330 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 6325--6330 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [2123] [2124] [2125] Underfull \hbox (badness 10000) in paragraph at lines 6498--6507 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, [2126] Underfull \hbox (badness 2150) in paragraph at lines 6562--6565 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [2127] [2128] Underfull \hbox (badness 3118) in paragraph at lines 6701--6703 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [2129] [2130] [2131] Underfull \hbox (badness 1325) in paragraph at lines 6880--6884 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/it/10 available.packag es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able Underfull \hbox (badness 4726) in paragraph at lines 6892--6898 \T1/ptm/m/n/10 used if \T1/zi4/m/it/10 repos = NULL\T1/ptm/m/n/10 . Can also be a char-ac-ter vec-tor, a sub-set of [2132] Underfull \hbox (badness 10000) in paragraph at lines 6964--6967 []\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to be Underfull \hbox (badness 10000) in paragraph at lines 6964--6967 \T1/ptm/m/n/10 passed to \T1/zi4/m/it/10 R CMD INSTALL \T1/ptm/m/n/10 for a sou rce pack-age in-stall. E.g., Underfull \hbox (badness 1424) in paragraph at lines 6972--6975 []\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p tm/m/it/10 not \T1/ptm/m/n/10 passed to [2133] Underfull \hbox (badness 3219) in paragraph at lines 7043--7050 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/it/ 10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 7043--7050 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 7043--7050 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by Underfull \hbox (badness 1596) in paragraph at lines 7043--7050 [][]\T1/zi4/m/it/10 getOption[][][]("install.packages.compile.from.source")\T1/ ptm/m/n/10 . \T1/zi4/m/it/10 type = "both" \T1/ptm/m/n/10 will be silently Underfull \hbox (badness 2932) in paragraph at lines 7051--7054 []\T1/ptm/m/n/10 Using pack-ages with \T1/zi4/m/it/10 type = "source" \T1/ptm/m /n/10 al-ways works pro-vided the pack-age con-tains no [2134] Underfull \hbox (badness 1546) in paragraph at lines 7177--7180 []\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing \T1/zi4/m/it/10 available.pa ckages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 ,] \T1/ptm/m /n/10 will [2135] Underfull \hbox (badness 10000) in paragraph at lines 7210--7215 [][][]\T1/zi4/m/it/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 download.packages [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 installed.packages[][][]\T1/ptm/m/n/ 10 , [2136] [2137] [2138] [2139] [2140] [2141] [2142] [2143] [2144] [2145] [2146] [2147] [2148] Underfull \hbox (badness 10000) in paragraph at lines 7997--7999 []\T1/ptm/m/n/10 typically the re-sult of \T1/zi4/m/it/10 methods(..)\T1/ptm/m/ n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class [2149] [2150] [2151] [2152] [2153] [2154] [2155] [2156] [2157] [2158] [2159] [2160] Underfull \hbox (badness 10000) in paragraph at lines 8735--8737 []\T1/ptm/m/n/10 for \T1/zi4/m/it/10 asDateBuilt()\T1/ptm/m/n/10 , a [][]\T1/zi 4/m/it/10 character[][][] \T1/ptm/m/n/10 string as from Underfull \hbox (badness 2310) in paragraph at lines 8757--8762 []\T1/ptm/m/n/10 If a `\T1/zi4/m/it/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [2161] [2162] [2163] [2164] [2165] [2166] [2167] [2168] [2169] Underfull \hbox (badness 1248) in paragraph at lines 9283--9287 []\T1/zi4/m/it/10 R CMD build \T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/m/ n/10 source tar-balls. The name(s) of the pack-ages are taken from the [2170] Underfull \hbox (badness 1789) in paragraph at lines 9363--9365 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [2171] [2172] [2173] [2174] [2175] [2176] [2177] [2178] [2179] [2180] [2181] [2182] Underfull \hbox (badness 1097) in paragraph at lines 10200--10203 []\T1/ptm/m/n/10 The name \T1/zi4/m/it/10 "clipboard" \T1/ptm/m/n/10 may also b e used on Win-dows, in which case [2183] [2184] Underfull \hbox (badness 3000) in paragraph at lines 10336--10341 [][][]\T1/zi4/m/it/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/it/10 read.t able[][][]\T1/ptm/m/n/10 ; [2185] [2186] [2187] [2188] [2189] [2190] [2191] [2192] [2193] Underfull \hbox (badness 2134) in paragraph at lines 10925--10930 [][][]\T1/zi4/m/it/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/it/10 write. table[][][]\T1/ptm/m/n/10 ; [2194] Underfull \hbox (badness 10000) in paragraph at lines 10981--10986 []\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for Underfull \hbox (badness 10000) in paragraph at lines 10981--10986 \T1/zi4/m/it/10 HKEY_LOCAL_MACHINE\T1/ptm/m/n/10 , \T1/zi4/m/it/10 HKEY_CLASSES _ROOT\T1/ptm/m/n/10 . \T1/zi4/m/it/10 HKEY_CURRENT_USER\T1/ptm/m/n/10 , [2195] [2196] [2197] [2198] [2199] [2200] [2201] [2202] [2203] Underfull \hbox (badness 2469) in paragraph at lines 11475--11479 []\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia , The Free En-cy-clo-pe-dia. Underfull \hbox (badness 3428) in paragraph at lines 11475--11479 [][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / w / index . php ? title = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac- [2204] [2205] [2206] [2207] [2208] [2209] Underfull \hbox (badness 4060) in paragraph at lines 11891--11894 []\T1/ptm/m/n/10 If `\T1/zi4/m/it/10 --default-packages\T1/ptm/m/n/10 ' is not used, then \T1/zi4/m/it/10 Rscript \T1/ptm/m/n/10 checks the en-vi-ron-ment var i-able Overfull \hbox (18.77168pt too wide) in paragraph at lines 11914--11914 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] [2210] [2211] [2212] [2213] Underfull \hbox (badness 2150) in paragraph at lines 12162--12164 [][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/ ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / www . gnu . org / software / emac s / manual / [2214] [2215] [2216] [2217] Underfull \hbox (badness 10000) in paragraph at lines 12381--12385 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/it/10 stylepath \T1/ptm/m/n/10 is n ow taken from the en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 12412--12418 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a [2218] [2219] Underfull \hbox (badness 1009) in paragraph at lines 12606--12618 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If [2220] Underfull \hbox (badness 4779) in paragraph at lines 12646--12648 []\T1/ptm/m/n/10 The file `\T1/zi4/m/it/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure s the R GUI (\T1/zi4/m/it/10 Rgui\T1/ptm/m/n/10 ) con-sole un-der MS Win-dows a nd Underfull \hbox (badness 1077) in paragraph at lines 12676--12683 \T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p er-sonal' di-rec-tory, oth-er-wise to [2221] [2222] [2223] [2224] [2225] [2226] [2227] Underfull \hbox (badness 3780) in paragraph at lines 13084--13088 []\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1 /zi4/m/it/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via Underfull \hbox (badness 2635) in paragraph at lines 13100--13103 []\T1/ptm/m/n/10 Repository `\T1/zi4/m/it/10 CRAN\T1/ptm/m/n/10 ' is treated sp e-cially: the value is taken from the cur-rent set-ting of [2228] [2229] [2230] [2231] Underfull \hbox (badness 2302) in paragraph at lines 13305--13307 []\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t o the Win-dows API call [2232] [2233] [2234] [2235] Underfull \hbox (badness 10000) in paragraph at lines 13603--13608 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/it/10 TRUE \T1/ptm/m/n/10 (de-fault), [] []\T1/zi4/m/it/10 deparse[][][](control = ) \T1/ptm/m/n/10 will not have Underfull \hbox (badness 5970) in paragraph at lines 13612--13615 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive [2236] [2237] Underfull \vbox (badness 3803) has occurred while \output is active [2238] [2239] [2240] [2241] [2242] [2243] Underfull \hbox (badness 2932) in paragraph at lines 14050--14057 []\T1/ptm/m/n/10 If \T1/zi4/m/it/10 syntax = NULL \T1/ptm/m/n/10 (the de-fault) then the avail-able syn-tax ob-jects are con-sulted in turn, Underfull \hbox (badness 1688) in paragraph at lines 14050--14057 \T1/ptm/m/n/10 and se-lected if their \T1/zi4/m/it/10 extension \T1/ptm/m/n/10 com-po-nent matches (as a reg-exp) the file name. Ob- [2244] [2245] [2246] [2247] Underfull \hbox (badness 6510) in paragraph at lines 14358--14362 []\T1/ptm/m/n/10 When ar-gu-ment \T1/zi4/m/it/10 tar \T1/ptm/m/n/10 is set to t he com-mand \T1/zi4/m/it/10 tar \T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment vari-a ble Underfull \hbox (badness 10000) in paragraph at lines 14365--14368 [][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / pubs . opengroup . org / Underfull \hbox (badness 2245) in paragraph at lines 14365--14368 \T1/zi4/m/it/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9 2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX [2248] [2249] [2250] [2251] [2252] [2253] [2254] [2255] [2256] [2257] Underfull \hbox (badness 10000) in paragraph at lines 15032--15037 []\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/it/10 destdir \T1/ptm/m/n/10 and \ T1/zi4/m/it/10 dependencies \T1/ptm/m/n/10 to be passed to Underfull \hbox (badness 3861) in paragraph at lines 15032--15037 [][]\T1/zi4/m/it/10 install.packages[][][] \T1/ptm/m/n/10 and \T1/zi4/m/it/10 i gnore_repo_cache\T1/ptm/m/n/10 , \T1/zi4/m/it/10 max_repo_cache_age \T1/ptm/m/n /10 and Underfull \hbox (badness 1052) in paragraph at lines 15038--15040 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. See [2258] Underfull \hbox (badness 10000) in paragraph at lines 15097--15100 [][][]\T1/zi4/m/it/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1 0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 download.package s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 installed.packages[][][]\T1/ptm/m/n /10 , [2259] [2260] [2261] [2262] [2263] [2264] [2265] [2266] [2267] [2268] [2269] [2270] [2271] Underfull \hbox (badness 10000) in paragraph at lines 15875--15877 []\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec- tion e.g. \T1/zi4/m/it/10 file = [2272] [2273] [2274]) (./fullrefman.ind [2275] [2276] [2277] [2278] [2279] [2280] [2281] [2282] [2283] [2284] [2285] [2286] [2287] [2288] [2289] [2290] [2291] [2292] [2293] [2294] [2295] [2296] [2297] [2298] [2299] [2300] [2301] [2302] [2303] [2304] [2305] [2306] [2307] [2308] [2309] [2310] [2311] [2312] [2313] [2314] [2315] [2316] [2317] [2318] [2319] [2320] [2321] [2322] [2323] [2324] [2325] [2326] [2327] [2328] [2329] Overfull \hbox (33.3567pt too wide) in paragraph at lines 9529--9531 []\T1/zi4/m/it/10 package_native_routine_registration_skeleton\T1/ptm/m/n/10 , [2330] [2331] [2332] [2333] [2334] [2335] Overfull \hbox (20.8567pt too wide) in paragraph at lines 10875--10877 []\T1/zi4/m/it/10 R_AVAILABLE_PACKAGES_CACHE_CONTROL_MAX_AGE [2336] [2337] [2338] [2339] [2340] [2341] [2342] [2343] Overfull \hbox (5.8567pt too wide) in paragraph at lines 12652--12654 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_depends Overfull \hbox (5.8567pt too wide) in paragraph at lines 12654--12656 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_results Overfull \hbox (5.8567pt too wide) in paragraph at lines 12656--12658 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_timings [2344] [2345] [2346] [2347] [2348] [2349] [2350] [2351] [2352] [2353]) (./fullrefman.aux) LaTeX Font Warning: Some font shapes were not available, defaults substituted. ) (see the transcript file for additional information)pdfTeX warning (dest): name {Rfn.write.matrix} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.lmList} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.dgTMatrix} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.glht} has been referenced but does not exist, r eplaced by a fixed one pdfTeX warning (dest): name{Rfn.survreg} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.coxph} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.stepAIC} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.rinvGauss} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.gamma.shape} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.profile.glm} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.cov.mcd} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.cov.mve} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.Insurance} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.sparse.model.matrix} has been referenced but do es not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.lqs} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.logLik.lme} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.logLik.gls} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.lmrob} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.rlm} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.wilcox.Rul.test} has been referenced but does n ot exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.loglm} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.nlsList} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.daisy} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.spearman.test} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.pSpearman} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.pKendall} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.Kendall} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.cor.fk} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.dMatrix} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.dgCMatrix} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.confint.nls} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.confint.glm} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.sammon} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.isoMDS} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.width.SJ} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.bcv} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.ucv} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.bandwidth.nrd} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.agnes} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.diana} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.lme} has been referenced but does not exist, re placed by a fixed one pdfTeX warning (dest): name{Rfn.ansari.Rul.test} has been referenced but does n ot exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.rpart} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.sparseMatrix} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.showDefault} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getGroupMembers} has been referenced but does n ot exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.resetGeneric} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.linearizeMlist} has been referenced but does no t exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getGeneric} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getMethodsForDispatch} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.setDataPart} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getDataPart} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.rBind} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.cBind} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.possibleExtends} has been referenced but does n ot exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.panel.identify} has been referenced but does no t exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.trellis.focus} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.mosaic} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.levelplot} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.contourplot} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.assoc} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.dpih} has been referenced but does not exist, r eplaced by a fixed one pdfTeX warning (dest): name{Rfn.truehist} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.bkde2D} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.which.is.max} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.roundX} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.getNamespace} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.asNamespace} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.formalArgs} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.isRematched} has been referenced but does not e xist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.chron} has been referenced but does not exist, replaced by a fixed one {/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc} {/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}{/ usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-t1-0.enc} Output written on fullrefman.pdf (2384 pages, 6450717 bytes). Transcript written on fullrefman.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-FAQ.texi @setfilename R-FAQ.info This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (/usr/share/texmf/tex/texinfo/txi-en.tex) [1{/var/lib/texmf/fonts/map/pdftex/up dmap/pdftex.map}] [-1] Chapter 1 Cross reference values unknown; you must run TeX again. [1] Chapter 2 [2] Underfull \hbox (badness 10000) in paragraph at lines 290--312 @textrm and sparc @reducedrm CPU[]@textrm s (e.g., [][]@texttt https:// buildd . debian. org/ build. php? & pkg=r-base[][][]@textrm ), [3] [4] [5] [6] [7] [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] [18] Chapter 4 [19] Chapter 5 [20] [21] [22] [23] [24] Chapter 6 [25] [26] Chapter 7 [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] Writing index file R-FAQ.fn [39] [40] [41] Underfull \hbox (badness 10000) in paragraph at lines 3288--3296 @texttt download.file()[] @textrm func-tion), a down-load method is cho-sen bas ed on the [42] Chapter 8 [43] Chapter 9 [44] [45] Chapter 10 [46] [47] ) (see the transcript file for additional information) Output written on R-FAQ.pdf (49 pages, 356360 bytes). Transcript written on R-FAQ.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (/usr/share/texmf/tex/texinfo/txi-en.tex) [1{/var/lib/texmf/fonts/map/pdftex/up dmap/pdftex.map}] (/<>/doc/manual/R-FAQ.toc [-1] [-2]) [-3] (/<>/doc/manual/R-FAQ.toc) (/<>/doc/manual/R-FAQ.toc) Chapter 1 (/<>/doc/manual/R-FAQ.aux) [1] Chapter 2 [2] Underfull \hbox (badness 10000) in paragraph at lines 290--312 @textrm and sparc @reducedrm CPU[]@textrm s (e.g., [][]@texttt https:// buildd . debian. org/ build. php? & pkg=r-base[][][]@textrm ), [3] [4] [5] [6] [7] [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] Chapter 4 [18] Chapter 5 [19] [20] [21] [22] [23] Chapter 6 [24] [25] Chapter 7 [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] Writing index file R-FAQ.fn [38] [39] [40] Underfull \hbox (badness 10000) in paragraph at lines 3288--3296 @texttt download.file()[] @textrm func-tion), a down-load method is cho-sen bas ed on the [41] Chapter 8 [42] Chapter 9 [43] [44] Chapter 10 [45] [46] ) (see the transcript file for additional information)pdfTeX warning (dest): name {47} has been referenced but does not exist, replaced by a fixed one Output written on R-FAQ.pdf (50 pages, 372449 bytes). Transcript written on R-FAQ.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (/usr/share/texmf/tex/texinfo/txi-en.tex) [1{/var/lib/texmf/fonts/map/pdftex/up dmap/pdftex.map}] (/<>/doc/manual/R-FAQ.toc [-1] [-2]) [-3] (/<>/doc/manual/R-FAQ.toc) (/<>/doc/manual/R-FAQ.toc) Chapter 1 (/<>/doc/manual/R-FAQ.aux) [1] Chapter 2 [2] Underfull \hbox (badness 10000) in paragraph at lines 290--312 @textrm and sparc @reducedrm CPU[]@textrm s (e.g., [][]@texttt https:// buildd . debian. org/ build. php? & pkg=r-base[][][]@textrm ), [3] [4] [5] [6] [7] [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] Chapter 4 [18] Chapter 5 [19] [20] [21] [22] [23] Chapter 6 [24] [25] Chapter 7 [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] Writing index file R-FAQ.fn [38] [39] [40] Underfull \hbox (badness 10000) in paragraph at lines 3288--3296 @texttt download.file()[] @textrm func-tion), a down-load method is cho-sen bas ed on the [41] Chapter 8 [42] Chapter 9 [43] [44] Chapter 10 [45] [46] ) (see the transcript file for additional information) Output written on R-FAQ.pdf (50 pages, 372431 bytes). Transcript written on R-FAQ.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-admin.texi @setfilename R-admin.info This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-admin.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Writing index file R-admin.cp Writing index file R-admin.en [1] Chapter 2 [2] Cross reference values unknown; you must run TeX again. [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] Chapter 3 [16] [17] Chapter 4 [18] [19] [20] Underfull \hbox (badness 10000) in paragraph at lines 1731--1741 @texttt org.R-project.R.fw.pkg[]@textrm , @texttt org.R-project.R.GUI.pkg[]@tex trm , @texttt org.r-project.x86_ Chapter 5 [21] Chapter 6 [22] Overfull \hbox (14.94176pt too wide) in paragraph at lines 1877--1877 []@texttt [1] "datasets" "utils" "grDevices" "graphics" "stats" "met hods"[] [23] [24] Underfull \hbox (badness 6842) in paragraph at lines 2105--2111 []@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age s. No ad-di- Overfull \hbox (37.93651pt too wide) in paragraph at lines 2112--2112 []@texttt Sys.setenv(PATH=paste("C:\\rtools40\\usr\\bin", Sys.getenv("PATH"), sep=";"))[] [25] [26] [27] Overfull \hbox (78.17732pt too wide) in paragraph at lines 2325--2325 []@texttt ./configure CC="clang -arch arm64" CFLAGS=-O2 CXX="clang++ -arch arm 64" CXXFLAGS=-O2[] [28] [29] [30] [31] Overfull \hbox (20.69044pt too wide) in paragraph at lines 2636--2636 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl lib-dir @text tt --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 2656--2656 []@texttt .../bin/i386/Rcmd check -l @textttsl lib-dir @texttt --extra-arch -- install=check:@textttsl pkg@texttt .log @textttsl pkg[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 2657--2657 []@texttt .../bin/x64/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --i nstall=check:@textttsl pkg@texttt .log @textttsl pkg[] [32] Chapter 7 [33] [34] [35] Chapter 8 [36] Chapter 9 [37] [38] [39] [40] Appendix A [41] [42] Overfull \hbox (49.43388pt too wide) in paragraph at lines 3296--3296 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit -- disable-cpp[] [43] [44] [45] [46] Overfull \hbox (14.94176pt too wide) in paragraph at lines 3585--3585 []@texttt JAVA_HOME=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.265.b01-1.fc32.x86_6 4/jre[] [47] [48] [49] [50] [51] [52] [53] Appendix B [54] [55] [56] [57] [58] [59] Appendix C [60] [61] [62] [63] Overfull \hbox (14.94176pt too wide) in paragraph at lines 4875--4875 []@texttt -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSER TIONS[] [64] [65] Overfull \hbox (59.61772pt too wide) in paragraph at lines 5059--5059 []@texttt curl -OL https://mac.r-project.org/libs-4/pcre2-10.34-darwin.17-x86_ 64.tar.gz[] Overfull \hbox (42.37166pt too wide) in paragraph at lines 5061--5061 []@texttt curl -OL https://mac.r-project.org/libs-4/xz-5.2.4-darwin.17-x86_64. tar.gz[] [66] Overfull \hbox (66.67995pt too wide) in paragraph at lines 5143--5143 []@texttt PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr /lib/pkgconfig[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 5160--5160 []@texttt curl -OL https://mac.r-project.org/tools/subversion-1.14.0-darwin15. 6.tar.gz[] [67] Overfull \hbox (38.79282pt too wide) in paragraph at lines 5193--5194 [][][]@smallrm See [][]@smalltt https:// developer. apple. com/ documentati on/ xcode/ notarizing_macos_software_before_distribution[][][]@smallrm .| [68] Overfull \hbox (106.92076pt too wide) in paragraph at lines 5259--5259 []@texttt export PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconf ig:/usr/lib/pkgconfig[] [69] [70] [71] Underfull \hbox (badness 10000) in paragraph at lines 5512--5517 []@textrm To see what com-pat-i-ble ver-sions of Java are cur-rently in-stalled , run Overfull \hbox (14.94176pt too wide) in paragraph at lines 5528--5528 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/termurin-11.jdk/Contents /Home[] [72] [73] Overfull \hbox (25.1256pt too wide) in paragraph at lines 5662--5662 []@texttt install_name_tool -change /usr/local/gfortran/lib/libgfortran.5.dyli b \[] Overfull \hbox (36.62297pt too wide) in paragraph at lines 5680--5680 []@texttt PKG_LIBS = /usr/local/clang/lib/libc++.a /usr/local/clang/lib/libc++ abi.a[] Underfull \hbox (badness 6842) in paragraph at lines 5682--5688 @textrm in @texttt src/Makevars[]@textrm . It would also be pos-si-ble to stat ic link the For- Underfull \hbox (badness 10000) in paragraph at lines 5682--5688 @textrm tran run-time li-braries @texttt /usr/local/gfortran/lib/libgfortran.a [] @textrm and [74] Overfull \hbox (43.6852pt too wide) in paragraph at lines 5715--5715 []@texttt FC="/usr/local/gfortran/bin/gfortran -mtune=native -mmacosx-version- min=10.13"[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 5772--5772 []@texttt curl -OL https://mac.r-project.org/libs-arm64/jpeg-9d-darwin.20-arm6 4.tar.gz[] [75] [76] Overfull \hbox (32.18782pt too wide) in paragraph at lines 5944--5944 []@texttt R_LD_LIBRARY_PATH="/opt/developerstudio12.6/lib:/usr/local/lib:/opt/ csw/lib"[] [77] Underfull \hbox (badness 10000) in paragraph at lines 6032--6038 @texttt LDFLAGS=-L/usr/local/lib/amd64[] @textrm or @texttt LDFLAGS=-L/usr/loca l/lib/sparcv9[] @textrm as Overfull \hbox (141.41289pt too wide) in paragraph at lines 6040--6040 []@texttt PKG_CONFIG_PATH= /usr/local/lib/amd64/pkgconfig:/opt/csw/lib/64/pkgc onfig:/usr/lib/64/pkgconfig[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 6047--6047 []@texttt JAVA_CPPFLAGS="-I${JAVA_HOME}/../include -I${JAVA_HOME}/../include/s olaris"[] [78] Underfull \hbox (badness 10000) in paragraph at lines 6097--6101 []@textrm Note that paths such as @texttt /opt/csw/lib[]@textrm , @texttt /usr/ local/lib/amd64[] @textrm and [79] [80] (Function and variable index) [81] No file R-admin.vrs. (Concept index) [82] No file R-admin.cps. (Environment variable index) [83] No file R-admin.ens. [84] ) (see the transcript file for additional information) Output written on R-admin.pdf (87 pages, 484756 bytes). Transcript written on R-admin.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-admin.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-admin.toc [-1] [-2]) [-3] (/<>/doc/manual/R-admin.toc) (/<>/doc/manual/R-admin.toc) Chapter 1 (/<>/doc/manual/R-admin.aux) Writing index file R-admin.cp Writing index file R-admin.en [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] Chapter 3 [16] [17] Chapter 4 [18] [19] [20] Underfull \hbox (badness 10000) in paragraph at lines 1731--1741 @texttt org.R-project.R.fw.pkg[]@textrm , @texttt org.R-project.R.GUI.pkg[]@tex trm , @texttt org.r-project.x86_ Chapter 5 [21] Chapter 6 [22] Overfull \hbox (14.94176pt too wide) in paragraph at lines 1877--1877 []@texttt [1] "datasets" "utils" "grDevices" "graphics" "stats" "met hods"[] [23] [24] Underfull \hbox (badness 6842) in paragraph at lines 2105--2111 []@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age s. No ad-di- Overfull \hbox (37.93651pt too wide) in paragraph at lines 2112--2112 []@texttt Sys.setenv(PATH=paste("C:\\rtools40\\usr\\bin", Sys.getenv("PATH"), sep=";"))[] [25] [26] [27] Overfull \hbox (78.17732pt too wide) in paragraph at lines 2325--2325 []@texttt ./configure CC="clang -arch arm64" CFLAGS=-O2 CXX="clang++ -arch arm 64" CXXFLAGS=-O2[] [28] [29] [30] [31] Overfull \hbox (20.69044pt too wide) in paragraph at lines 2636--2636 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl lib-dir @text tt --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 2656--2656 []@texttt .../bin/i386/Rcmd check -l @textttsl lib-dir @texttt --extra-arch -- install=check:@textttsl pkg@texttt .log @textttsl pkg[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 2657--2657 []@texttt .../bin/x64/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --i nstall=check:@textttsl pkg@texttt .log @textttsl pkg[] Chapter 7 [32] [33] [34] Chapter 8 [35] Chapter 9 [36] [37] [38] [39] Appendix A [40] [41] Overfull \hbox (49.43388pt too wide) in paragraph at lines 3296--3296 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit -- disable-cpp[] [42] [43] [44] [45] Overfull \hbox (14.94176pt too wide) in paragraph at lines 3585--3585 []@texttt JAVA_HOME=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.265.b01-1.fc32.x86_6 4/jre[] [46] [47] [48] [49] [50] [51] [52] Appendix B [53] [54] [55] [56] [57] [58] Appendix C [59] [60] [61] [62] Overfull \hbox (14.94176pt too wide) in paragraph at lines 4875--4875 []@texttt -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSER TIONS[] [63] [64] Overfull \hbox (59.61772pt too wide) in paragraph at lines 5059--5059 []@texttt curl -OL https://mac.r-project.org/libs-4/pcre2-10.34-darwin.17-x86_ 64.tar.gz[] Overfull \hbox (42.37166pt too wide) in paragraph at lines 5061--5061 []@texttt curl -OL https://mac.r-project.org/libs-4/xz-5.2.4-darwin.17-x86_64. tar.gz[] [65] Overfull \hbox (66.67995pt too wide) in paragraph at lines 5143--5143 []@texttt PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr /lib/pkgconfig[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 5160--5160 []@texttt curl -OL https://mac.r-project.org/tools/subversion-1.14.0-darwin15. 6.tar.gz[] [66] Overfull \hbox (38.79282pt too wide) in paragraph at lines 5193--5194 [][][]@smallrm See [][]@smalltt https:// developer. apple. com/ documentati on/ xcode/ notarizing_macos_software_before_distribution[][][]@smallrm .| [67] Overfull \hbox (106.92076pt too wide) in paragraph at lines 5259--5259 []@texttt export PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconf ig:/usr/lib/pkgconfig[] [68] [69] [70] Underfull \hbox (badness 10000) in paragraph at lines 5512--5517 []@textrm To see what com-pat-i-ble ver-sions of Java are cur-rently in-stalled , run Overfull \hbox (14.94176pt too wide) in paragraph at lines 5528--5528 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/termurin-11.jdk/Contents /Home[] [71] [72] Overfull \hbox (25.1256pt too wide) in paragraph at lines 5662--5662 []@texttt install_name_tool -change /usr/local/gfortran/lib/libgfortran.5.dyli b \[] Overfull \hbox (36.62297pt too wide) in paragraph at lines 5680--5680 []@texttt PKG_LIBS = /usr/local/clang/lib/libc++.a /usr/local/clang/lib/libc++ abi.a[] Underfull \hbox (badness 6842) in paragraph at lines 5682--5688 @textrm in @texttt src/Makevars[]@textrm . It would also be pos-si-ble to stat ic link the For- Underfull \hbox (badness 10000) in paragraph at lines 5682--5688 @textrm tran run-time li-braries @texttt /usr/local/gfortran/lib/libgfortran.a [] @textrm and [73] Overfull \hbox (43.6852pt too wide) in paragraph at lines 5715--5715 []@texttt FC="/usr/local/gfortran/bin/gfortran -mtune=native -mmacosx-version- min=10.13"[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 5772--5772 []@texttt curl -OL https://mac.r-project.org/libs-arm64/jpeg-9d-darwin.20-arm6 4.tar.gz[] [74] [75] Overfull \hbox (32.18782pt too wide) in paragraph at lines 5944--5944 []@texttt R_LD_LIBRARY_PATH="/opt/developerstudio12.6/lib:/usr/local/lib:/opt/ csw/lib"[] [76] Underfull \hbox (badness 10000) in paragraph at lines 6032--6038 @texttt LDFLAGS=-L/usr/local/lib/amd64[] @textrm or @texttt LDFLAGS=-L/usr/loca l/lib/sparcv9[] @textrm as Overfull \hbox (141.41289pt too wide) in paragraph at lines 6040--6040 []@texttt PKG_CONFIG_PATH= /usr/local/lib/amd64/pkgconfig:/opt/csw/lib/64/pkgc onfig:/usr/lib/64/pkgconfig[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 6047--6047 []@texttt JAVA_CPPFLAGS="-I${JAVA_HOME}/../include -I${JAVA_HOME}/../include/s olaris"[] [77] Underfull \hbox (badness 10000) in paragraph at lines 6097--6101 []@textrm Note that paths such as @texttt /opt/csw/lib[]@textrm , @texttt /usr/ local/lib/amd64[] @textrm and [78] [79] (Function and variable index) [80] (/<>/doc/manual/R-admin.vrs) (Concept index) [81] (/<>/doc/manual/R-admin.cps) (Environment variable index) [82] (/<>/doc/manual/R-admin.ens) [83] ) (see the transcript file for additional information)pdfTeX warning (dest): name {84} has been referenced but does not exist, replaced by a fixed one Output written on R-admin.pdf (88 pages, 528868 bytes). Transcript written on R-admin.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-admin.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-admin.toc [-1] [-2]) [-3] (/<>/doc/manual/R-admin.toc) (/<>/doc/manual/R-admin.toc) Chapter 1 (/<>/doc/manual/R-admin.aux) Writing index file R-admin.cp Writing index file R-admin.en [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] Chapter 3 [16] [17] Chapter 4 [18] [19] [20] Underfull \hbox (badness 10000) in paragraph at lines 1731--1741 @texttt org.R-project.R.fw.pkg[]@textrm , @texttt org.R-project.R.GUI.pkg[]@tex trm , @texttt org.r-project.x86_ Chapter 5 [21] Chapter 6 [22] Overfull \hbox (14.94176pt too wide) in paragraph at lines 1877--1877 []@texttt [1] "datasets" "utils" "grDevices" "graphics" "stats" "met hods"[] [23] [24] Underfull \hbox (badness 6842) in paragraph at lines 2105--2111 []@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age s. No ad-di- Overfull \hbox (37.93651pt too wide) in paragraph at lines 2112--2112 []@texttt Sys.setenv(PATH=paste("C:\\rtools40\\usr\\bin", Sys.getenv("PATH"), sep=";"))[] [25] [26] [27] Overfull \hbox (78.17732pt too wide) in paragraph at lines 2325--2325 []@texttt ./configure CC="clang -arch arm64" CFLAGS=-O2 CXX="clang++ -arch arm 64" CXXFLAGS=-O2[] [28] [29] [30] [31] Overfull \hbox (20.69044pt too wide) in paragraph at lines 2636--2636 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl lib-dir @text tt --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 2656--2656 []@texttt .../bin/i386/Rcmd check -l @textttsl lib-dir @texttt --extra-arch -- install=check:@textttsl pkg@texttt .log @textttsl pkg[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 2657--2657 []@texttt .../bin/x64/Rcmd check -l @textttsl lib-dir @texttt --extra-arch --i nstall=check:@textttsl pkg@texttt .log @textttsl pkg[] Chapter 7 [32] [33] [34] Chapter 8 [35] Chapter 9 [36] [37] [38] [39] Appendix A [40] [41] Overfull \hbox (49.43388pt too wide) in paragraph at lines 3296--3296 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit -- disable-cpp[] [42] [43] [44] [45] Overfull \hbox (14.94176pt too wide) in paragraph at lines 3585--3585 []@texttt JAVA_HOME=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.265.b01-1.fc32.x86_6 4/jre[] [46] [47] [48] [49] [50] [51] [52] Appendix B [53] [54] [55] [56] [57] [58] Appendix C [59] [60] [61] [62] Overfull \hbox (14.94176pt too wide) in paragraph at lines 4875--4875 []@texttt -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSER TIONS[] [63] [64] Overfull \hbox (59.61772pt too wide) in paragraph at lines 5059--5059 []@texttt curl -OL https://mac.r-project.org/libs-4/pcre2-10.34-darwin.17-x86_ 64.tar.gz[] Overfull \hbox (42.37166pt too wide) in paragraph at lines 5061--5061 []@texttt curl -OL https://mac.r-project.org/libs-4/xz-5.2.4-darwin.17-x86_64. tar.gz[] [65] Overfull \hbox (66.67995pt too wide) in paragraph at lines 5143--5143 []@texttt PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr /lib/pkgconfig[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 5160--5160 []@texttt curl -OL https://mac.r-project.org/tools/subversion-1.14.0-darwin15. 6.tar.gz[] [66] Overfull \hbox (38.79282pt too wide) in paragraph at lines 5193--5194 [][][]@smallrm See [][]@smalltt https:// developer. apple. com/ documentati on/ xcode/ notarizing_macos_software_before_distribution[][][]@smallrm .| [67] Overfull \hbox (106.92076pt too wide) in paragraph at lines 5259--5259 []@texttt export PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconf ig:/usr/lib/pkgconfig[] [68] [69] [70] Underfull \hbox (badness 10000) in paragraph at lines 5512--5517 []@textrm To see what com-pat-i-ble ver-sions of Java are cur-rently in-stalled , run Overfull \hbox (14.94176pt too wide) in paragraph at lines 5528--5528 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/termurin-11.jdk/Contents /Home[] [71] [72] Overfull \hbox (25.1256pt too wide) in paragraph at lines 5662--5662 []@texttt install_name_tool -change /usr/local/gfortran/lib/libgfortran.5.dyli b \[] Overfull \hbox (36.62297pt too wide) in paragraph at lines 5680--5680 []@texttt PKG_LIBS = /usr/local/clang/lib/libc++.a /usr/local/clang/lib/libc++ abi.a[] Underfull \hbox (badness 6842) in paragraph at lines 5682--5688 @textrm in @texttt src/Makevars[]@textrm . It would also be pos-si-ble to stat ic link the For- Underfull \hbox (badness 10000) in paragraph at lines 5682--5688 @textrm tran run-time li-braries @texttt /usr/local/gfortran/lib/libgfortran.a [] @textrm and [73] Overfull \hbox (43.6852pt too wide) in paragraph at lines 5715--5715 []@texttt FC="/usr/local/gfortran/bin/gfortran -mtune=native -mmacosx-version- min=10.13"[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 5772--5772 []@texttt curl -OL https://mac.r-project.org/libs-arm64/jpeg-9d-darwin.20-arm6 4.tar.gz[] [74] [75] Overfull \hbox (32.18782pt too wide) in paragraph at lines 5944--5944 []@texttt R_LD_LIBRARY_PATH="/opt/developerstudio12.6/lib:/usr/local/lib:/opt/ csw/lib"[] [76] Underfull \hbox (badness 10000) in paragraph at lines 6032--6038 @texttt LDFLAGS=-L/usr/local/lib/amd64[] @textrm or @texttt LDFLAGS=-L/usr/loca l/lib/sparcv9[] @textrm as Overfull \hbox (141.41289pt too wide) in paragraph at lines 6040--6040 []@texttt PKG_CONFIG_PATH= /usr/local/lib/amd64/pkgconfig:/opt/csw/lib/64/pkgc onfig:/usr/lib/64/pkgconfig[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 6047--6047 []@texttt JAVA_CPPFLAGS="-I${JAVA_HOME}/../include -I${JAVA_HOME}/../include/s olaris"[] [77] Underfull \hbox (badness 10000) in paragraph at lines 6097--6101 []@textrm Note that paths such as @texttt /opt/csw/lib[]@textrm , @texttt /usr/ local/lib/amd64[] @textrm and [78] [79] (Function and variable index) [80] (/<>/doc/manual/R-admin.vrs) (Concept index) [81] (/<>/doc/manual/R-admin.cps) (Environment variable index) [82] (/<>/doc/manual/R-admin.ens) [83] ) (see the transcript file for additional information) Output written on R-admin.pdf (88 pages, 528822 bytes). Transcript written on R-admin.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-data.texi @setfilename R-data.info This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-data.t2d/pdf/xtr/R-data.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-data.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Acknowledgements) [1] Chapter 1 [2] Writing index file R-data.cp Cross reference values unknown; you must run TeX again. [3] [4] [5] [6] Chapter 2 [7] [8] [9] [10] [11] [12] [13] Chapter 3 [14] [15] Chapter 4 [16] [17] [18] [19] [20] [21] [22] Chapter 5 [23] Underfull \hbox (badness 10000) in paragraph at lines 1793--1799 []@textrm Packages [][]@textbf h5 @textrm (@texttt https:// CRAN. R-project. org/ package=h5[]@textrm )[][], Bio-con-duc-tor's @textbf rhdf5@textrm , Chapter 6 [24] Chapter 7 [25] [26] [27] [28] [29] Chapter 8 [30] Chapter 9 [31] Appendix A [32] (Function and variable index) [33] No file R-data.vrs. (Concept index) [34] No file R-data.cps. [35] ) (see the transcript file for additional information) Output written on R-data.pdf (38 pages, 269306 bytes). Transcript written on R-data.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-data.t2d/pdf/xtr/R-data.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-data.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-data.toc [-1]) [-2] (/<>/doc/manual/R-data.toc) (/<>/doc/manual/R-data.toc) (Acknowledgements) (/<>/doc/manual/R-data.aux) [1] Chapter 1 [2] Writing index file R-data.cp [3] [4] [5] [6] Chapter 2 [7] [8] [9] [10] [11] [12] [13] Chapter 3 [14] [15] Chapter 4 [16] [17] [18] [19] [20] [21] [22] Chapter 5 [23] Underfull \hbox (badness 10000) in paragraph at lines 1793--1799 []@textrm Packages [][]@textbf h5 @textrm (@texttt https:// CRAN. R-project. org/ package=h5[]@textrm )[][], Bio-con-duc-tor's @textbf rhdf5@textrm , Chapter 6 [24] Chapter 7 [25] [26] [27] [28] [29] Chapter 8 [30] Chapter 9 [31] Appendix A [32] (Function and variable index) [33] (/<>/doc/manual/R-data.vrs [34]) (Concept index) [35] (/<>/doc/manual/R-data.cps) [36] [37] ) (see the transcript file for additional information) Output written on R-data.pdf (41 pages, 309052 bytes). Transcript written on R-data.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-data.t2d/pdf/xtr/R-data.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-data.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-data.toc [-1]) [-2] (/<>/doc/manual/R-data.toc) (/<>/doc/manual/R-data.toc) (Acknowledgements) (/<>/doc/manual/R-data.aux) [1] Chapter 1 [2] Writing index file R-data.cp [3] [4] [5] [6] Chapter 2 [7] [8] [9] [10] [11] [12] [13] Chapter 3 [14] [15] Chapter 4 [16] [17] [18] [19] [20] [21] [22] Chapter 5 [23] Underfull \hbox (badness 10000) in paragraph at lines 1793--1799 []@textrm Packages [][]@textbf h5 @textrm (@texttt https:// CRAN. R-project. org/ package=h5[]@textrm )[][], Bio-con-duc-tor's @textbf rhdf5@textrm , Chapter 6 [24] Chapter 7 [25] [26] [27] [28] [29] Chapter 8 [30] Chapter 9 [31] Appendix A [32] (Function and variable index) [33] (/<>/doc/manual/R-data.vrs [34]) (Concept index) [35] (/<>/doc/manual/R-data.cps) [36] [37] ) (see the transcript file for additional information) Output written on R-data.pdf (41 pages, 309053 bytes). Transcript written on R-data.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-exts.texi @setfilename R-exts.info This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-exts.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Acknowledgements) Chapter 1 [1] Writing index file R-exts.cp Cross reference values unknown; you must run TeX again. [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 494--497 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] Overfull \hbox (95.42339pt too wide) in paragraph at lines 1514--1514 [] @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec" , "--no-test-load")[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 1515--1515 [] @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL , quiet = TRUE)[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 1516--1516 [] @texttt res[z] <- file.size(file.path(lib, pkg_name, "data", "Rdata. rdb"))[] [20] [21] [22] [23] [24] [25] [26] [27] Overfull \hbox (14.94176pt too wide) in paragraph at lines 2126--2126 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF LAGS)[] [28] [29] [30] [31] [32] Overfull \hbox (67.78206pt too wide) in paragraph at lines 2512--2512 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (53.60722pt too wide) in paragraph at lines 2514--2514 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [33] [34] Overfull \hbox (16.92342pt too wide) in paragraph at lines 2652--2652 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar e defined.[] [35] [36] Overfull \hbox (60.93126pt too wide) in paragraph at lines 2827--2827 [] @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX 11PICFLAGS)")[] Underfull \hbox (badness 7221) in paragraph at lines 2850--2856 [][][]@smallrm See [][]@smalltt https:// isocpp. org/ std/ standing-documen ts/ sd-6-sg10-feature-test-recommendations[][][] @smallrm or [37] Overfull \hbox (2.98494pt too wide) in paragraph at lines 2932--2934 [][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v er-sions such as @smalltt ~/.R/check.Renviron.i386[] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] Overfull \hbox (20.69044pt too wide) in paragraph at lines 4272--4272 []@texttt importFrom("stats", approx, optim, pchisq, predict, qchisq, qnorm, s pline)[] [55] [56] [57] Overfull \hbox (81.29893pt too wide) in paragraph at lines 4496--4496 [] @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB ILITY)" \[] Overfull \hbox (59.61772pt too wide) in paragraph at lines 4515--4515 []@texttt CXXFLAGS = `"${RBIN}" CMD config CXXFLAGS` `"${RBIN}" CMD config CXX PICFLAGS`[] [58] [59] [60] [61] [62] [63] Overfull \hbox (53.86903pt too wide) in paragraph at lines 4933--4933 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (48.12035pt too wide) in paragraph at lines 4935--4935 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (65.36641pt too wide) in paragraph at lines 4936--4936 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Overfull \hbox (76.86378pt too wide) in paragraph at lines 4951--4951 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] [64] [65] [66] [67] [68] Overfull \hbox (14.94176pt too wide) in paragraph at lines 5301--5301 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@ euro"[] [69] [70] [71] Overfull \hbox (19.3769pt too wide) in paragraph at lines 5554--5554 []@texttt abs acos atan bind calloc ceil div exp fabs floor fmod free log mall oc[] [72] [73] Overfull \hbox (53.86903pt too wide) in paragraph at lines 5682--5682 []@texttt 'register' storage class specifier is deprecated and incompatible wi th C++17[] Overfull \hbox (13.62822pt too wide) in paragraph at lines 5730--5730 []@texttt #if defined (__unix__) || (defined (__APPLE__) && defined (__MACH__) )[] [74] [75] [76] [77] Overfull \hbox (13.62822pt too wide) in paragraph at lines 6014--6014 []@texttt #define dngettext(pkg, String, StringP, N) (N > 1 ? StringP : String )[] [78] [79] [80] Chapter 2 [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] [94] Underfull \hbox (badness 10000) in paragraph at lines 7278--7285 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [95] [96] [97] [98] [99] [100] Chapter 3 [101] [102] [103] [104] [105] [106] Overfull \hbox (20.69044pt too wide) in paragraph at lines 8205--8205 [] @texttt as.integer(runif(N, 1, 12)), as.integer(runif(N, 1, 28)))[] [107] [108] [109] Chapter 4 [110] [111] [112] Overfull \hbox (14.94176pt too wide) in paragraph at lines 8577--8577 []@texttt evaluation nested too deeply: infinite recursion / options(expressio ns=)?[] [113] Overfull \hbox (25.25755pt too wide) in paragraph at lines 8618--8618 []@smalltt Message: Error: no valid set of coefficients has been found: pleas e supply starting values[] [114] Overfull \hbox (20.53261pt too wide) in paragraph at lines 8722--8722 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star t, etastart = etastart,[] Overfull \hbox (38.96663pt too wide) in paragraph at lines 8752--8761 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. @texttt debug(stats:::predict.Arima)[]@textrm . [115] [116] [117] [118] Overfull \hbox (48.90796pt too wide) in paragraph at lines 9033--9034 [][][]@smallrm see [][]@smalltt https:// llvm. org/ devmtg/ 2014-04/ PDFs/ LightningTalks/ EuroLLVM%202014%20--%20container%20overflow. [119] [120] Overfull \hbox (78.17732pt too wide) in paragraph at lines 9171--9171 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_ odr_violation=0'[] Overfull \hbox (29.50735pt too wide) in paragraph at lines 9204--9206 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by @t exttt -fsanitize=undefined,address[] [121] [122] Overfull \hbox (72.42863pt too wide) in paragraph at lines 9350--9350 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [123] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9395--9395 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl assi,[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9398--9398 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t( cu)),[] [124] Overfull \hbox (26.43913pt too wide) in paragraph at lines 9477--9477 []@texttt #5 0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9 698f98,[] [125] [126] [127] Underfull \hbox (badness 10000) in paragraph at lines 9716--9718 [][][]@smallrm See [][]@smalltt https:// svn. r-project. org/ R-dev-web/ t runk/ CRAN/ QA/ Simon/ R-build/ fixpathR[][][]@smallrm : [128] Overfull \hbox (124.16682pt too wide) in paragraph at lines 9773--9773 []@texttt boot.f:61: warning: type of 'ddot' does not match original declarati on [-Wlto-type-mismatch][] Overfull \hbox (147.16158pt too wide) in paragraph at lines 9792--9792 []@texttt rkpk2.f:77:5: warning: type of 'dstup' does not match original decla ration [-Wlto-type-mismatch][] Overfull \hbox (141.41289pt too wide) in paragraph at lines 9803--9803 []@texttt reg.f:78:33: warning: type of 'dqrdc' does not match original declar ation [-Wlto-type-mismatch][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9823--9823 [] @tex ttt 1[] [129] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9832--9832 [] @tex ttt 1[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 9833--9833 []@texttt Warning: Type mismatch in argument 'jpvt' at (1); passed REAL(8) to INTEGER(4)[] Chapter 5 [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] Overfull \hbox (30.87428pt too wide) in paragraph at lines 10617--10617 [] @texttt double *w, int *iper, double *span, double *al pha,[] Overfull \hbox (51.66371pt too wide) in paragraph at lines 10680--10680 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [141] [142] [143] [144] [145] [146] [147] [148] Overfull \hbox (37.93651pt too wide) in paragraph at lines 11257--11257 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12090--12090 [] @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL SE");[] [160] Underfull \hbox (badness 10000) in paragraph at lines 12151--12153 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [161] [162] [163] [164] [165] [166] [167] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12685--12685 [] @texttt // a version with (too) much PROTECT()ion .. "better safe than s orry"[] [168] [169] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12808--12808 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12813--12813 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12868--12868 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] [170] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12880--12880 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] [171] Overfull \hbox (26.43913pt too wide) in paragraph at lines 12979--12979 [] @texttt cmdexpr = PROTECT(R_ParseVector(cmdSexp, -1, &status, R_NilV alue));[] [172] [173] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13117--13117 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one xit);[] [174] Overfull \hbox (43.6852pt too wide) in paragraph at lines 13198--13198 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [175] Overfull \hbox (72.42863pt too wide) in paragraph at lines 13296--13296 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE _ANY} cetype_t;[] Chapter 6 [176] [177] [178] [179] [180] [181] [182] [183] Overfull \hbox (20.69044pt too wide) in paragraph at lines 14036--14036 [] @texttt call cmsg(msg//c_null_char) ! need to concatenate a nul term inator[] Underfull \hbox (badness 10000) in paragraph at lines 14048--14053 @texttt mixed-language-programming/ standard-tools-for-interoperability/ bind . html[][][] [184] [185] [186] [187] [188] [189] [190] [191] [192] Underfull \hbox (badness 10000) in paragraph at lines 14737--14741 []@texttt R_orderVector()[] @textrm cor-re-sponds to R's @texttt order(..., na .last, decreasing)[]@textrm . [193] Warning: unbalanced parentheses in @def... [194] [195] Overfull \hbox (26.43913pt too wide) in paragraph at lines 14958--14958 [] @texttt void (*clean)(void *data, Rboolean jump), void *cdata,[] [196] [197] [198] [199] [200] Chapter 7 [201] [202] Chapter 8 [203] [204] [205] Overfull \hbox (43.6852pt too wide) in paragraph at lines 15710--15710 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [206] Overfull \hbox (20.69044pt too wide) in paragraph at lines 15753--15753 []@texttt extern int (*ptr_R_ReadConsole)(const char *, unsigned char *, int, int);[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 15768--15768 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [207] [208] [209] [210] Underfull \hbox (badness 10000) in paragraph at lines 16011--16018 @texttt modules/internet/nanoftp.c[]@textrm , @texttt src/modules/internet/nan ohttp.c[] @textrm and @texttt src/ [211] [212] [213] [214] [215] Underfull \hbox (badness 10000) in paragraph at lines 16394--16398 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R -core\R32[] @textrm or (Function and variable index) [216] No file R-exts.vrs. (Concept index) [217] No file R-exts.cps. [218] ) (see the transcript file for additional information) Output written on R-exts.pdf (221 pages, 947197 bytes). Transcript written on R-exts.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-exts.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-exts.toc [-1] [-2] [-3] [-4]) [-5] (/<>/doc/manual/R-exts.toc) (/<>/doc/manual/R-exts.toc) (Acknowledgements) (/<>/doc/manual/R-exts.aux) Chapter 1 [1] Writing index file R-exts.cp [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 494--497 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] Overfull \hbox (95.42339pt too wide) in paragraph at lines 1514--1514 [] @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec" , "--no-test-load")[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 1515--1515 [] @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL , quiet = TRUE)[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 1516--1516 [] @texttt res[z] <- file.size(file.path(lib, pkg_name, "data", "Rdata. rdb"))[] [20] [21] [22] [23] [24] [25] [26] [27] Overfull \hbox (14.94176pt too wide) in paragraph at lines 2126--2126 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF LAGS)[] [28] [29] [30] [31] [32] Overfull \hbox (67.78206pt too wide) in paragraph at lines 2512--2512 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (53.60722pt too wide) in paragraph at lines 2514--2514 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [33] [34] Overfull \hbox (16.92342pt too wide) in paragraph at lines 2652--2652 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar e defined.[] [35] [36] Overfull \hbox (60.93126pt too wide) in paragraph at lines 2827--2827 [] @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX 11PICFLAGS)")[] Underfull \hbox (badness 7221) in paragraph at lines 2850--2856 [][][]@smallrm See [][]@smalltt https:// isocpp. org/ std/ standing-documen ts/ sd-6-sg10-feature-test-recommendations[][][] @smallrm or [37] Overfull \hbox (2.98494pt too wide) in paragraph at lines 2932--2934 [][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v er-sions such as @smalltt ~/.R/check.Renviron.i386[] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] Overfull \hbox (20.69044pt too wide) in paragraph at lines 4272--4272 []@texttt importFrom("stats", approx, optim, pchisq, predict, qchisq, qnorm, s pline)[] [55] [56] [57] Overfull \hbox (81.29893pt too wide) in paragraph at lines 4496--4496 [] @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB ILITY)" \[] Overfull \hbox (59.61772pt too wide) in paragraph at lines 4515--4515 []@texttt CXXFLAGS = `"${RBIN}" CMD config CXXFLAGS` `"${RBIN}" CMD config CXX PICFLAGS`[] [58] [59] [60] [61] [62] [63] Overfull \hbox (53.86903pt too wide) in paragraph at lines 4933--4933 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (48.12035pt too wide) in paragraph at lines 4935--4935 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (65.36641pt too wide) in paragraph at lines 4936--4936 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Overfull \hbox (76.86378pt too wide) in paragraph at lines 4951--4951 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] [64] [65] [66] [67] [68] Overfull \hbox (14.94176pt too wide) in paragraph at lines 5301--5301 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@ euro"[] [69] [70] [71] Overfull \hbox (19.3769pt too wide) in paragraph at lines 5554--5554 []@texttt abs acos atan bind calloc ceil div exp fabs floor fmod free log mall oc[] [72] [73] Overfull \hbox (53.86903pt too wide) in paragraph at lines 5682--5682 []@texttt 'register' storage class specifier is deprecated and incompatible wi th C++17[] Overfull \hbox (13.62822pt too wide) in paragraph at lines 5730--5730 []@texttt #if defined (__unix__) || (defined (__APPLE__) && defined (__MACH__) )[] [74] [75] [76] [77] Overfull \hbox (13.62822pt too wide) in paragraph at lines 6014--6014 []@texttt #define dngettext(pkg, String, StringP, N) (N > 1 ? StringP : String )[] [78] [79] [80] Chapter 2 [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] [94] Underfull \hbox (badness 10000) in paragraph at lines 7278--7285 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [95] [96] [97] [98] [99] [100] Chapter 3 [101] [102] [103] [104] [105] [106] Overfull \hbox (20.69044pt too wide) in paragraph at lines 8205--8205 [] @texttt as.integer(runif(N, 1, 12)), as.integer(runif(N, 1, 28)))[] [107] [108] [109] Chapter 4 [110] [111] [112] Overfull \hbox (14.94176pt too wide) in paragraph at lines 8577--8577 []@texttt evaluation nested too deeply: infinite recursion / options(expressio ns=)?[] [113] Overfull \hbox (25.25755pt too wide) in paragraph at lines 8618--8618 []@smalltt Message: Error: no valid set of coefficients has been found: pleas e supply starting values[] [114] Overfull \hbox (20.53261pt too wide) in paragraph at lines 8722--8722 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star t, etastart = etastart,[] Overfull \hbox (38.96663pt too wide) in paragraph at lines 8752--8761 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. @texttt debug(stats:::predict.Arima)[]@textrm . [115] [116] [117] [118] Overfull \hbox (48.90796pt too wide) in paragraph at lines 9033--9034 [][][]@smallrm see [][]@smalltt https:// llvm. org/ devmtg/ 2014-04/ PDFs/ LightningTalks/ EuroLLVM%202014%20--%20container%20overflow. [119] [120] Overfull \hbox (78.17732pt too wide) in paragraph at lines 9171--9171 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_ odr_violation=0'[] Overfull \hbox (29.50735pt too wide) in paragraph at lines 9204--9206 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by @t exttt -fsanitize=undefined,address[] [121] [122] Overfull \hbox (72.42863pt too wide) in paragraph at lines 9350--9350 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [123] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9395--9395 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl assi,[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9398--9398 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t( cu)),[] [124] Overfull \hbox (26.43913pt too wide) in paragraph at lines 9477--9477 []@texttt #5 0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9 698f98,[] [125] [126] [127] Underfull \hbox (badness 10000) in paragraph at lines 9716--9718 [][][]@smallrm See [][]@smalltt https:// svn. r-project. org/ R-dev-web/ t runk/ CRAN/ QA/ Simon/ R-build/ fixpathR[][][]@smallrm : [128] Overfull \hbox (124.16682pt too wide) in paragraph at lines 9773--9773 []@texttt boot.f:61: warning: type of 'ddot' does not match original declarati on [-Wlto-type-mismatch][] Overfull \hbox (147.16158pt too wide) in paragraph at lines 9792--9792 []@texttt rkpk2.f:77:5: warning: type of 'dstup' does not match original decla ration [-Wlto-type-mismatch][] Overfull \hbox (141.41289pt too wide) in paragraph at lines 9803--9803 []@texttt reg.f:78:33: warning: type of 'dqrdc' does not match original declar ation [-Wlto-type-mismatch][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9823--9823 [] @tex ttt 1[] [129] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9832--9832 [] @tex ttt 1[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 9833--9833 []@texttt Warning: Type mismatch in argument 'jpvt' at (1); passed REAL(8) to INTEGER(4)[] Chapter 5 [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] Overfull \hbox (30.87428pt too wide) in paragraph at lines 10617--10617 [] @texttt double *w, int *iper, double *span, double *al pha,[] Overfull \hbox (51.66371pt too wide) in paragraph at lines 10680--10680 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [141] [142] [143] [144] [145] [146] [147] [148] Overfull \hbox (37.93651pt too wide) in paragraph at lines 11257--11257 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12090--12090 [] @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL SE");[] [160] Underfull \hbox (badness 10000) in paragraph at lines 12151--12153 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [161] [162] [163] [164] [165] [166] [167] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12685--12685 [] @texttt // a version with (too) much PROTECT()ion .. "better safe than s orry"[] [168] [169] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12808--12808 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12813--12813 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12868--12868 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] [170] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12880--12880 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] [171] Overfull \hbox (26.43913pt too wide) in paragraph at lines 12979--12979 [] @texttt cmdexpr = PROTECT(R_ParseVector(cmdSexp, -1, &status, R_NilV alue));[] [172] [173] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13117--13117 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one xit);[] [174] Overfull \hbox (43.6852pt too wide) in paragraph at lines 13198--13198 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [175] Overfull \hbox (72.42863pt too wide) in paragraph at lines 13296--13296 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE _ANY} cetype_t;[] Chapter 6 [176] [177] [178] [179] [180] [181] [182] [183] Overfull \hbox (20.69044pt too wide) in paragraph at lines 14036--14036 [] @texttt call cmsg(msg//c_null_char) ! need to concatenate a nul term inator[] Underfull \hbox (badness 10000) in paragraph at lines 14048--14053 @texttt mixed-language-programming/ standard-tools-for-interoperability/ bind . html[][][] [184] [185] [186] [187] [188] [189] [190] [191] [192] Underfull \hbox (badness 10000) in paragraph at lines 14737--14741 []@texttt R_orderVector()[] @textrm cor-re-sponds to R's @texttt order(..., na .last, decreasing)[]@textrm . [193] Warning: unbalanced parentheses in @def... [194] [195] Overfull \hbox (26.43913pt too wide) in paragraph at lines 14958--14958 [] @texttt void (*clean)(void *data, Rboolean jump), void *cdata,[] [196] [197] [198] [199] [200] Chapter 7 [201] [202] Chapter 8 [203] [204] [205] Overfull \hbox (43.6852pt too wide) in paragraph at lines 15710--15710 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [206] Overfull \hbox (20.69044pt too wide) in paragraph at lines 15753--15753 []@texttt extern int (*ptr_R_ReadConsole)(const char *, unsigned char *, int, int);[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 15768--15768 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [207] [208] [209] [210] Underfull \hbox (badness 10000) in paragraph at lines 16011--16018 @texttt modules/internet/nanoftp.c[]@textrm , @texttt src/modules/internet/nan ohttp.c[] @textrm and @texttt src/ [211] [212] [213] [214] [215] Underfull \hbox (badness 10000) in paragraph at lines 16394--16398 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R -core\R32[] @textrm or (Function and variable index) [216] (/<>/doc/manual/R-exts.vrs [217] [218] [219]) (Concept index) [220] (/<>/doc/manual/R-exts.cps [221]) [222] ) (see the transcript file for additional information) Output written on R-exts.pdf (229 pages, 1011926 bytes). Transcript written on R-exts.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-exts.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-exts.toc [-1] [-2] [-3] [-4]) [-5] (/<>/doc/manual/R-exts.toc) (/<>/doc/manual/R-exts.toc) (Acknowledgements) (/<>/doc/manual/R-exts.aux) Chapter 1 [1] Writing index file R-exts.cp [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 494--497 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] Overfull \hbox (95.42339pt too wide) in paragraph at lines 1514--1514 [] @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec" , "--no-test-load")[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 1515--1515 [] @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL , quiet = TRUE)[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 1516--1516 [] @texttt res[z] <- file.size(file.path(lib, pkg_name, "data", "Rdata. rdb"))[] [20] [21] [22] [23] [24] [25] [26] [27] Overfull \hbox (14.94176pt too wide) in paragraph at lines 2126--2126 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF LAGS)[] [28] [29] [30] [31] [32] Overfull \hbox (67.78206pt too wide) in paragraph at lines 2512--2512 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (53.60722pt too wide) in paragraph at lines 2514--2514 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [33] [34] Overfull \hbox (16.92342pt too wide) in paragraph at lines 2652--2652 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar e defined.[] [35] [36] Overfull \hbox (60.93126pt too wide) in paragraph at lines 2827--2827 [] @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX 11PICFLAGS)")[] Underfull \hbox (badness 7221) in paragraph at lines 2850--2856 [][][]@smallrm See [][]@smalltt https:// isocpp. org/ std/ standing-documen ts/ sd-6-sg10-feature-test-recommendations[][][] @smallrm or [37] Overfull \hbox (2.98494pt too wide) in paragraph at lines 2932--2934 [][][]@smallrm On sys-tems which use sub-architectures, architecture-specific v er-sions such as @smalltt ~/.R/check.Renviron.i386[] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] Overfull \hbox (20.69044pt too wide) in paragraph at lines 4272--4272 []@texttt importFrom("stats", approx, optim, pchisq, predict, qchisq, qnorm, s pline)[] [55] [56] [57] Overfull \hbox (81.29893pt too wide) in paragraph at lines 4496--4496 [] @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB ILITY)" \[] Overfull \hbox (59.61772pt too wide) in paragraph at lines 4515--4515 []@texttt CXXFLAGS = `"${RBIN}" CMD config CXXFLAGS` `"${RBIN}" CMD config CXX PICFLAGS`[] [58] [59] [60] [61] [62] [63] Overfull \hbox (53.86903pt too wide) in paragraph at lines 4933--4933 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (48.12035pt too wide) in paragraph at lines 4935--4935 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (65.36641pt too wide) in paragraph at lines 4936--4936 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Overfull \hbox (76.86378pt too wide) in paragraph at lines 4951--4951 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] [64] [65] [66] [67] [68] Overfull \hbox (14.94176pt too wide) in paragraph at lines 5301--5301 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@ euro"[] [69] [70] [71] Overfull \hbox (19.3769pt too wide) in paragraph at lines 5554--5554 []@texttt abs acos atan bind calloc ceil div exp fabs floor fmod free log mall oc[] [72] [73] Overfull \hbox (53.86903pt too wide) in paragraph at lines 5682--5682 []@texttt 'register' storage class specifier is deprecated and incompatible wi th C++17[] Overfull \hbox (13.62822pt too wide) in paragraph at lines 5730--5730 []@texttt #if defined (__unix__) || (defined (__APPLE__) && defined (__MACH__) )[] [74] [75] [76] [77] Overfull \hbox (13.62822pt too wide) in paragraph at lines 6014--6014 []@texttt #define dngettext(pkg, String, StringP, N) (N > 1 ? StringP : String )[] [78] [79] [80] Chapter 2 [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] [94] Underfull \hbox (badness 10000) in paragraph at lines 7278--7285 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [95] [96] [97] [98] [99] [100] Chapter 3 [101] [102] [103] [104] [105] [106] Overfull \hbox (20.69044pt too wide) in paragraph at lines 8205--8205 [] @texttt as.integer(runif(N, 1, 12)), as.integer(runif(N, 1, 28)))[] [107] [108] [109] Chapter 4 [110] [111] [112] Overfull \hbox (14.94176pt too wide) in paragraph at lines 8577--8577 []@texttt evaluation nested too deeply: infinite recursion / options(expressio ns=)?[] [113] Overfull \hbox (25.25755pt too wide) in paragraph at lines 8618--8618 []@smalltt Message: Error: no valid set of coefficients has been found: pleas e supply starting values[] [114] Overfull \hbox (20.53261pt too wide) in paragraph at lines 8722--8722 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star t, etastart = etastart,[] Overfull \hbox (38.96663pt too wide) in paragraph at lines 8752--8761 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. @texttt debug(stats:::predict.Arima)[]@textrm . [115] [116] [117] [118] Overfull \hbox (48.90796pt too wide) in paragraph at lines 9033--9034 [][][]@smallrm see [][]@smalltt https:// llvm. org/ devmtg/ 2014-04/ PDFs/ LightningTalks/ EuroLLVM%202014%20--%20container%20overflow. [119] [120] Overfull \hbox (78.17732pt too wide) in paragraph at lines 9171--9171 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_ odr_violation=0'[] Overfull \hbox (29.50735pt too wide) in paragraph at lines 9204--9206 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by @t exttt -fsanitize=undefined,address[] [121] [122] Overfull \hbox (72.42863pt too wide) in paragraph at lines 9350--9350 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [123] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9395--9395 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl assi,[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9398--9398 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t( cu)),[] [124] Overfull \hbox (26.43913pt too wide) in paragraph at lines 9477--9477 []@texttt #5 0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9 698f98,[] [125] [126] [127] Underfull \hbox (badness 10000) in paragraph at lines 9716--9718 [][][]@smallrm See [][]@smalltt https:// svn. r-project. org/ R-dev-web/ t runk/ CRAN/ QA/ Simon/ R-build/ fixpathR[][][]@smallrm : [128] Overfull \hbox (124.16682pt too wide) in paragraph at lines 9773--9773 []@texttt boot.f:61: warning: type of 'ddot' does not match original declarati on [-Wlto-type-mismatch][] Overfull \hbox (147.16158pt too wide) in paragraph at lines 9792--9792 []@texttt rkpk2.f:77:5: warning: type of 'dstup' does not match original decla ration [-Wlto-type-mismatch][] Overfull \hbox (141.41289pt too wide) in paragraph at lines 9803--9803 []@texttt reg.f:78:33: warning: type of 'dqrdc' does not match original declar ation [-Wlto-type-mismatch][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9823--9823 [] @tex ttt 1[] [129] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9832--9832 [] @tex ttt 1[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 9833--9833 []@texttt Warning: Type mismatch in argument 'jpvt' at (1); passed REAL(8) to INTEGER(4)[] Chapter 5 [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] Overfull \hbox (30.87428pt too wide) in paragraph at lines 10617--10617 [] @texttt double *w, int *iper, double *span, double *al pha,[] Overfull \hbox (51.66371pt too wide) in paragraph at lines 10680--10680 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [141] [142] [143] [144] [145] [146] [147] [148] Overfull \hbox (37.93651pt too wide) in paragraph at lines 11257--11257 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12090--12090 [] @texttt if(ign == NA_LOGICAL) error("'ignore_quotes' must be TRUE or FAL SE");[] [160] Underfull \hbox (badness 10000) in paragraph at lines 12151--12153 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [161] [162] [163] [164] [165] [166] [167] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12685--12685 [] @texttt // a version with (too) much PROTECT()ion .. "better safe than s orry"[] [168] [169] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12808--12808 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12813--12813 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12868--12868 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] [170] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12880--12880 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] [171] Overfull \hbox (26.43913pt too wide) in paragraph at lines 12979--12979 [] @texttt cmdexpr = PROTECT(R_ParseVector(cmdSexp, -1, &status, R_NilV alue));[] [172] [173] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13117--13117 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one xit);[] [174] Overfull \hbox (43.6852pt too wide) in paragraph at lines 13198--13198 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [175] Overfull \hbox (72.42863pt too wide) in paragraph at lines 13296--13296 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE _ANY} cetype_t;[] Chapter 6 [176] [177] [178] [179] [180] [181] [182] [183] Overfull \hbox (20.69044pt too wide) in paragraph at lines 14036--14036 [] @texttt call cmsg(msg//c_null_char) ! need to concatenate a nul term inator[] Underfull \hbox (badness 10000) in paragraph at lines 14048--14053 @texttt mixed-language-programming/ standard-tools-for-interoperability/ bind . html[][][] [184] [185] [186] [187] [188] [189] [190] [191] [192] Underfull \hbox (badness 10000) in paragraph at lines 14737--14741 []@texttt R_orderVector()[] @textrm cor-re-sponds to R's @texttt order(..., na .last, decreasing)[]@textrm . [193] Warning: unbalanced parentheses in @def... [194] [195] Overfull \hbox (26.43913pt too wide) in paragraph at lines 14958--14958 [] @texttt void (*clean)(void *data, Rboolean jump), void *cdata,[] [196] [197] [198] [199] [200] Chapter 7 [201] [202] Chapter 8 [203] [204] [205] Overfull \hbox (43.6852pt too wide) in paragraph at lines 15710--15710 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [206] Overfull \hbox (20.69044pt too wide) in paragraph at lines 15753--15753 []@texttt extern int (*ptr_R_ReadConsole)(const char *, unsigned char *, int, int);[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 15768--15768 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [207] [208] [209] [210] Underfull \hbox (badness 10000) in paragraph at lines 16011--16018 @texttt modules/internet/nanoftp.c[]@textrm , @texttt src/modules/internet/nan ohttp.c[] @textrm and @texttt src/ [211] [212] [213] [214] [215] Underfull \hbox (badness 10000) in paragraph at lines 16394--16398 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R -core\R32[] @textrm or (Function and variable index) [216] (/<>/doc/manual/R-exts.vrs [217] [218] [219]) (Concept index) [220] (/<>/doc/manual/R-exts.cps [221]) [222] ) (see the transcript file for additional information) Output written on R-exts.pdf (229 pages, 1011926 bytes). Transcript written on R-exts.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-intro.texi @setfilename R-intro.info This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-intro.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Preface) Cross reference values unknown; you must run TeX again. Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13] [14] [15] Chapter 4 [16] [17] Chapter 5 [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] Chapter 6 [28] [29] [30] [31] Chapter 7 [32] [33] [34] Chapter 8 [35] [36] [37] >/doc/manual/images/h ist.pdf> >/doc/manual/images/ecdf.pdf> [38] >/doc/manual/images/QQ.pdf> [39] [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] Chapter 11 [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] [66] Chapter 12 [67] [68] [69] [70] [71] Overfull \hbox (26.43913pt too wide) in paragraph at lines 5741--5741 []@texttt > text(x, y, expression(paste(bgroup("(", atop(n, x), ")"), p^x, q^{ n-x})))[] [72] [73] [74] [75] [76] >/doc/manual/images/f ig11.pdf> [77] >/doc/manual/images/fig12.pdf> [78] [79] [80] [81] Chapter 13 [82] Underfull \hbox (badness 10000) in paragraph at lines 6447--6452 []@textrm Users con-nected to the In-ter-net can use the @texttt install.packag es()[] @textrm and [83] Chapter 14 [84] [85] Underfull \hbox (badness 10000) in paragraph at lines 6648--6653 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and [86] Appendix A [87] [88] [89] [90] Appendix B [91] [92] [93] [94] [95] [96] [97] [98] Appendix C [99] [100] Appendix D [101] No file R-intro.vrs. Appendix E [102] No file R-intro.cps. Appendix F [103] [104] ) (see the transcript file for additional information) Output written on R-intro.pdf (107 pages, 576626 bytes). Transcript written on R-intro.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-intro.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-intro.toc [-1] [-2] [-3]) [-4] (/<>/doc/manual/R-intro.toc) (/<>/doc/manual/R-intro.toc) (Preface) (/<>/doc/manual/R-intro.aux) Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13] [14] [15] Chapter 4 [16] [17] Chapter 5 [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] Chapter 6 [28] [29] [30] [31] Chapter 7 [32] [33] [34] Chapter 8 [35] [36] [37] >/doc/manual/images/h ist.pdf> >/doc/manual/images/ecdf.pdf> [38] >/doc/manual/images/QQ.pdf> [39] [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] Chapter 11 [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] [66] Chapter 12 [67] [68] [69] [70] [71] Overfull \hbox (26.43913pt too wide) in paragraph at lines 5741--5741 []@texttt > text(x, y, expression(paste(bgroup("(", atop(n, x), ")"), p^x, q^{ n-x})))[] [72] [73] [74] [75] [76] >/doc/manual/images/f ig11.pdf> [77] >/doc/manual/images/fig12.pdf> [78] [79] [80] [81] Chapter 13 [82] Underfull \hbox (badness 10000) in paragraph at lines 6447--6452 []@textrm Users con-nected to the In-ter-net can use the @texttt install.packag es()[] @textrm and [83] Chapter 14 [84] [85] Underfull \hbox (badness 10000) in paragraph at lines 6648--6653 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and [86] Appendix A [87] [88] [89] [90] Appendix B [91] [92] [93] [94] [95] [96] [97] [98] Appendix C [99] [100] Appendix D [101] (/<>/doc/manual/R-intro.vrs [102] [103]) Appendix E [104] (/<>/doc/manual/R-intro.cps [105]) Appendix F [106] [107] ) (see the transcript file for additional information) Output written on R-intro.pdf (113 pages, 633069 bytes). Transcript written on R-intro.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-intro.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-intro.toc [-1] [-2] [-3]) [-4] (/<>/doc/manual/R-intro.toc) (/<>/doc/manual/R-intro.toc) (Preface) (/<>/doc/manual/R-intro.aux) Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13] [14] [15] Chapter 4 [16] [17] Chapter 5 [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] Chapter 6 [28] [29] [30] [31] Chapter 7 [32] [33] [34] Chapter 8 [35] [36] [37] >/doc/manual/images/h ist.pdf> >/doc/manual/images/ecdf.pdf> [38] >/doc/manual/images/QQ.pdf> [39] [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] Chapter 11 [54] [55] [56] [57] [58] [59] [60] [61] [62] [63] [64] [65] [66] Chapter 12 [67] [68] [69] [70] [71] Overfull \hbox (26.43913pt too wide) in paragraph at lines 5741--5741 []@texttt > text(x, y, expression(paste(bgroup("(", atop(n, x), ")"), p^x, q^{ n-x})))[] [72] [73] [74] [75] [76] >/doc/manual/images/f ig11.pdf> [77] >/doc/manual/images/fig12.pdf> [78] [79] [80] [81] Chapter 13 [82] Underfull \hbox (badness 10000) in paragraph at lines 6447--6452 []@textrm Users con-nected to the In-ter-net can use the @texttt install.packag es()[] @textrm and [83] Chapter 14 [84] [85] Underfull \hbox (badness 10000) in paragraph at lines 6648--6653 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and [86] Appendix A [87] [88] [89] [90] Appendix B [91] [92] [93] [94] [95] [96] [97] [98] Appendix C [99] [100] Appendix D [101] (/<>/doc/manual/R-intro.vrs [102] [103]) Appendix E [104] (/<>/doc/manual/R-intro.cps [105]) Appendix F [106] [107] ) (see the transcript file for additional information) Output written on R-intro.pdf (113 pages, 633167 bytes). Transcript written on R-intro.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-ints.texi @setfilename R-ints.info This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-ints.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] Overfull \hbox (49.43388pt too wide) in paragraph at lines 1468--1468 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 1469--1469 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 1470--1470 [] @texttt length(meth.Ops <- nM$`.__T__Ops:base`) # 71 methods for the 'Ops' (group)generic[] Overfull \hbox (158.65895pt too wide) in paragraph at lines 1471--1471 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [19] [20] [21] [22] [23] [24] Chapter 2 [25] Overfull \hbox (26.43913pt too wide) in paragraph at lines 2004--2004 [] @texttt if (!is.character(x)) x <- structure(as.character(x), names = na mes(x))[] [26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34] Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] Chapter 7 [48] Underfull \hbox (badness 10000) in paragraph at lines 3654--3663 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, Underfull \hbox (badness 10000) in paragraph at lines 3654--3663 @texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib/libR.dyl ib[]@textrm , [49] Overfull \hbox (16.81319pt too wide) in paragraph at lines 3705--3709 []@textrm The de-fault path for a per-sonal li-brary di-rec-tory is set as @te xttt ~/Library/R/arch/x.y/library[]@textrm . Chapter 8 [50] [51] [52] [53] [54] [55] Underfull \hbox (badness 10000) in paragraph at lines 4072--4080 []@textrm A string with comma-separated @textttsl name@texttt =@textttsl value [] @textrm pairs (with @textsl value[] @textrm a Underfull \hbox (badness 10000) in paragraph at lines 4072--4080 @textrm log-i-cal con-stant) giv-ing ad-di-tional ar-gu-ments for the [][]@tex tbf codetools Underfull \hbox (badness 10000) in paragraph at lines 4072--4080 @textrm (@texttt https:// CRAN. R-project. org/ package=codetools[]@textrm )[][] func-tions used Underfull \hbox (badness 10000) in paragraph at lines 4072--4080 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa tchArgs = FALSE[] @textrm and [56] [57] [58] [59] [60] [61] Overfull \hbox (14.94176pt too wide) in paragraph at lines 4436--4436 []@texttt _R_CHECK_LENGTH_1_CONDITION_=package:_R_CHECK_PACKAGE_NAME_,abort,ve rbose[] [62] Chapter 9 [63] [64] Chapter 10 [65] Chapter 11 [66] Chapter 12 [67] [68] (Function and variable index) [69] [70] No file R-ints.vrs. (Concept index) [71] No file R-ints.cps. [72] ) (see the transcript file for additional information) Output written on R-ints.pdf (75 pages, 408329 bytes). Transcript written on R-ints.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-ints.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-ints.toc [-1] [-2]) [-3] (/<>/doc/manual/R-ints.toc) (/<>/doc/manual/R-ints.toc) Chapter 1 (/<>/doc/manual/R-ints.aux) Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] Overfull \hbox (49.43388pt too wide) in paragraph at lines 1468--1468 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 1469--1469 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 1470--1470 [] @texttt length(meth.Ops <- nM$`.__T__Ops:base`) # 71 methods for the 'Ops' (group)generic[] Overfull \hbox (158.65895pt too wide) in paragraph at lines 1471--1471 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [19] [20] [21] [22] [23] [24] Chapter 2 [25] Overfull \hbox (26.43913pt too wide) in paragraph at lines 2004--2004 [] @texttt if (!is.character(x)) x <- structure(as.character(x), names = na mes(x))[] [26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34] Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] Chapter 7 [48] Underfull \hbox (badness 10000) in paragraph at lines 3654--3663 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, Underfull \hbox (badness 10000) in paragraph at lines 3654--3663 @texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib/libR.dyl ib[]@textrm , [49] Overfull \hbox (16.81319pt too wide) in paragraph at lines 3705--3709 []@textrm The de-fault path for a per-sonal li-brary di-rec-tory is set as @te xttt ~/Library/R/arch/x.y/library[]@textrm . Chapter 8 [50] [51] [52] [53] [54] [55] Underfull \hbox (badness 10000) in paragraph at lines 4072--4080 []@textrm A string with comma-separated @textttsl name@texttt =@textttsl value [] @textrm pairs (with @textsl value[] @textrm a Underfull \hbox (badness 10000) in paragraph at lines 4072--4080 @textrm log-i-cal con-stant) giv-ing ad-di-tional ar-gu-ments for the [][]@tex tbf codetools Underfull \hbox (badness 10000) in paragraph at lines 4072--4080 @textrm (@texttt https:// CRAN. R-project. org/ package=codetools[]@textrm )[][] func-tions used Underfull \hbox (badness 10000) in paragraph at lines 4072--4080 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa tchArgs = FALSE[] @textrm and [56] [57] [58] [59] [60] [61] Overfull \hbox (14.94176pt too wide) in paragraph at lines 4436--4436 []@texttt _R_CHECK_LENGTH_1_CONDITION_=package:_R_CHECK_PACKAGE_NAME_,abort,ve rbose[] [62] Chapter 9 [63] [64] Chapter 10 [65] Chapter 11 [66] Chapter 12 [67] [68] (Function and variable index) [69] [70] (/<>/doc/manual/R-ints.vrs [71] [72]) (Concept index) [73] (/<>/doc/manual/R-ints.cps) [74] ) (see the transcript file for additional information) Output written on R-ints.pdf (79 pages, 460040 bytes). Transcript written on R-ints.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-ints.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-ints.toc [-1] [-2]) [-3] (/<>/doc/manual/R-ints.toc) (/<>/doc/manual/R-ints.toc) Chapter 1 (/<>/doc/manual/R-ints.aux) Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] Overfull \hbox (49.43388pt too wide) in paragraph at lines 1468--1468 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 1469--1469 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 1470--1470 [] @texttt length(meth.Ops <- nM$`.__T__Ops:base`) # 71 methods for the 'Ops' (group)generic[] Overfull \hbox (158.65895pt too wide) in paragraph at lines 1471--1471 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [19] [20] [21] [22] [23] [24] Chapter 2 [25] Overfull \hbox (26.43913pt too wide) in paragraph at lines 2004--2004 [] @texttt if (!is.character(x)) x <- structure(as.character(x), names = na mes(x))[] [26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34] Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] Chapter 7 [48] Underfull \hbox (badness 10000) in paragraph at lines 3654--3663 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, Underfull \hbox (badness 10000) in paragraph at lines 3654--3663 @texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib/libR.dyl ib[]@textrm , [49] Overfull \hbox (16.81319pt too wide) in paragraph at lines 3705--3709 []@textrm The de-fault path for a per-sonal li-brary di-rec-tory is set as @te xttt ~/Library/R/arch/x.y/library[]@textrm . Chapter 8 [50] [51] [52] [53] [54] [55] Underfull \hbox (badness 10000) in paragraph at lines 4072--4080 []@textrm A string with comma-separated @textttsl name@texttt =@textttsl value [] @textrm pairs (with @textsl value[] @textrm a Underfull \hbox (badness 10000) in paragraph at lines 4072--4080 @textrm log-i-cal con-stant) giv-ing ad-di-tional ar-gu-ments for the [][]@tex tbf codetools Underfull \hbox (badness 10000) in paragraph at lines 4072--4080 @textrm (@texttt https:// CRAN. R-project. org/ package=codetools[]@textrm )[][] func-tions used Underfull \hbox (badness 10000) in paragraph at lines 4072--4080 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa tchArgs = FALSE[] @textrm and [56] [57] [58] [59] [60] [61] Overfull \hbox (14.94176pt too wide) in paragraph at lines 4436--4436 []@texttt _R_CHECK_LENGTH_1_CONDITION_=package:_R_CHECK_PACKAGE_NAME_,abort,ve rbose[] [62] Chapter 9 [63] [64] Chapter 10 [65] Chapter 11 [66] Chapter 12 [67] [68] (Function and variable index) [69] [70] (/<>/doc/manual/R-ints.vrs [71] [72]) (Concept index) [73] (/<>/doc/manual/R-ints.cps) [74] ) (see the transcript file for additional information) Output written on R-ints.pdf (79 pages, 460043 bytes). Transcript written on R-ints.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-lang.texi @setfilename R-lang.info This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-lang.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Writing index file R-lang.cp Chapter 2 [1] [2] Cross reference values unknown; you must run TeX again. Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294 @textbf storage.mode| [3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] Chapter 5 [28] [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] Chapter 7 [44] [45] Chapter 8 [46] [47] Chapter 9 [48] [49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58] (Function and Variable Index) [59] No file R-lang.vrs. (Concept Index) [60] No file R-lang.cps. Appendix A [61] [62] ) (see the transcript file for additional information) Output written on R-lang.pdf (65 pages, 330658 bytes). Transcript written on R-lang.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-lang.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-lang.toc [-1] [-2]) [-3] (/<>/doc/manual/R-lang.toc) (/<>/doc/manual/R-lang.toc) Chapter 1 (/<>/doc/manual/R-lang.aux) Writing index file R-lang.cp Chapter 2 [1] [2] Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294 @textbf storage.mode| [3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] Chapter 5 [28] [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] Chapter 7 [44] [45] Chapter 8 [46] [47] Chapter 9 [48] [49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58] (Function and Variable Index) [59] (/<>/doc/manual/R-lang.vrs [60]) (Concept Index) [61] (/<>/doc/manual/R-lang.cps) [62] Appendix A [63] [64] ) (see the transcript file for additional information) Output written on R-lang.pdf (69 pages, 379983 bytes). Transcript written on R-lang.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2019-09-20.22]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-lang.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-lang.toc [-1] [-2]) [-3] (/<>/doc/manual/R-lang.toc) (/<>/doc/manual/R-lang.toc) Chapter 1 (/<>/doc/manual/R-lang.aux) Writing index file R-lang.cp Chapter 2 [1] [2] Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294 @textbf storage.mode| [3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] Chapter 5 [28] [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] Chapter 7 [44] [45] Chapter 8 [46] [47] Chapter 9 [48] [49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58] (Function and Variable Index) [59] (/<>/doc/manual/R-lang.vrs [60]) (Concept Index) [61] (/<>/doc/manual/R-lang.cps) [62] Appendix A [63] [64] ) (see the transcript file for additional information) Output written on R-lang.pdf (69 pages, 379973 bytes). Transcript written on R-lang.log. installing R manuals in PDF format ... make[2]: Leaving directory '/<>/doc/manual' make[1]: Leaving directory '/<>' make prefix=/<>/debian/r-base-core/usr \ infodir=/<>/debian/r-base-core/usr/share/info install-info make[1]: Entering directory '/<>' make[2]: Entering directory '/<>/doc/manual' /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-FAQ.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-admin.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-data.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-exts.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-intro.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-ints.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-lang.texi mkdir -p -- /<>/debian/r-base-core/usr/share/info /usr/bin/install -c -m 644 "./dir" "/<>/debian/r-base-core/usr/share/info" installing R info pages ... updating '/<>/debian/r-base-core/usr/share/info/dir' ... you need to adjust /<>/debian/r-base-core/usr/share/info/dir manually you need to adjust /<>/debian/r-base-core/usr/share/info/dir manually you need to adjust /<>/debian/r-base-core/usr/share/info/dir manually you need to adjust /<>/debian/r-base-core/usr/share/info/dir manually you need to adjust /<>/debian/r-base-core/usr/share/info/dir manually you need to adjust /<>/debian/r-base-core/usr/share/info/dir manually you need to adjust /<>/debian/r-base-core/usr/share/info/dir manually make[2]: Leaving directory '/<>/doc/manual' make[1]: Leaving directory '/<>' dh_movefiles --sourcedir=debian/r-base-core -pr-doc-pdf dh_movefiles --sourcedir=debian/r-base-core -pr-doc-html gunzip -9v /<>/debian/r-base-core/usr/share/info/*.gz /<>/debian/r-base-core/usr/share/info/R-FAQ.info.gz: 67.2% -- replaced with /<>/debian/r-base-core/usr/share/info/R-FAQ.info /<>/debian/r-base-core/usr/share/info/R-admin.info.gz: 67.7% -- replaced with /<>/debian/r-base-core/usr/share/info/R-admin.info /<>/debian/r-base-core/usr/share/info/R-data.info.gz: 70.7% -- replaced with /<>/debian/r-base-core/usr/share/info/R-data.info /<>/debian/r-base-core/usr/share/info/R-exts.info-1.gz: 66.3% -- replaced with /<>/debian/r-base-core/usr/share/info/R-exts.info-1 /<>/debian/r-base-core/usr/share/info/R-exts.info-2.gz: 67.4% -- replaced with /<>/debian/r-base-core/usr/share/info/R-exts.info-2 /<>/debian/r-base-core/usr/share/info/R-exts.info-3.gz: 79.6% -- replaced with /<>/debian/r-base-core/usr/share/info/R-exts.info-3 /<>/debian/r-base-core/usr/share/info/R-exts.info.gz: 70.2% -- replaced with /<>/debian/r-base-core/usr/share/info/R-exts.info /<>/debian/r-base-core/usr/share/info/R-intro.info.gz: 70.0% -- replaced with /<>/debian/r-base-core/usr/share/info/R-intro.info /<>/debian/r-base-core/usr/share/info/R-ints.info.gz: 68.0% -- replaced with /<>/debian/r-base-core/usr/share/info/R-ints.info /<>/debian/r-base-core/usr/share/info/R-lang.info.gz: 71.6% -- replaced with /<>/debian/r-base-core/usr/share/info/R-lang.info dh_movefiles --sourcedir=debian/r-base-core -pr-doc-info rm -vf /<>/debian/r-doc-info/usr/share/info/dir \ /<>/debian/r-doc-info/usr/share/info/dir.old removed '/<>/debian/r-doc-info/usr/share/info/dir' touch install-indep-stamp dh_installdirs -pr-mathlib usr/include usr/lib \ usr/share/lintian/overrides \ usr/lib/pkgconfig dh_movefiles --sourcedir=debian/r-base-core -pr-mathlib (cd /<>/debian/r-mathlib/usr/lib; \ ls -l ; \ mv -v libRmath.so libRmath.so.1.0.0; \ ln -sv libRmath.so.1.0.0 libRmath.so.1; \ ln -sv libRmath.so.1 libRmath.so) total 5672 -rw-rw-r-- 1 root root 4930096 Nov 9 15:49 libRmath.a -rwxrwxr-x 1 root root 871504 Nov 9 15:49 libRmath.so drwxr-xr-x 2 root root 4096 Nov 9 16:22 pkgconfig renamed 'libRmath.so' -> 'libRmath.so.1.0.0' 'libRmath.so.1' -> 'libRmath.so.1.0.0' 'libRmath.so' -> 'libRmath.so.1' install -m 0644 src/include/Rmath.h \ /<>/debian/r-mathlib/usr/include install -m 0644 debian/Rprofile.site /<>/debian/r-base-core/etc/R install -m 0644 debian/Renviron.site /<>/debian/r-base-core/etc/R (cd /<>/debian/r-base-core/usr/lib/R/etc; \ cat /<>/debian/Renviron-R_LIBS.patch | patch --verbose; \ mv Makeconf repositories ldpaths ../../../../etc/R/; \ mv Renviron Renviron.ucf; \ ln -s /etc/R/Makeconf .; \ ln -s /etc/R/Renviron .; \ ln -s /etc/R/Renviron.site .; \ ln -s /etc/R/Rprofile.site .; \ ln -s /etc/R/ldpaths .; \ ln -s /etc/R/repositories . ) Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |--- Renviron.orig 2003-04-04 06:52:22.000000000 -0500 |+++ Renviron 2003-04-04 06:49:05.000000000 -0500 -------------------------- patching file Renviron Using Plan A... Hunk #1 succeeded at 51 with fuzz 2 (offset 18 lines). done dh_bash-completion # edd 12 Jan 2016 new location #install -m 0644 debian/R.bash-completion \ # debian/r-base-core/usr/share/bash-completion/completions/R (cd /<>/debian/r-base-core/usr/lib/; \ ln -sv R/lib/libR.so . ) './libR.so' -> 'R/lib/libR.so' (cd debian/icon-class-patch && munpack rlogo_icon.png.mpack) rlogo_icon.png (application/octet-stream) install -m 0644 debian/icon-class-patch/rlogo_icon.png \ debian/r-base-core/usr/share/icons/hicolor/48x48/apps install -m 0644 debian/icon-class-patch/Rlogo.svg \ debian/r-base-core/usr/share/icons/hicolor/scalable/apps/rlogo_icon.svg install -m 0644 debian/icon-class-patch/R.desktop \ debian/r-base-core/usr/share/applications rm debian/icon-class-patch/rlogo_icon.png touch install-arch-stamp *** binary-arch *** dh_testdir -a dh_testroot -a dh_installdocs -pr-base-core doc/NEWS.* README \ debian/README.Atlas \ debian/README.mathlib dh_installdocs -pr-mathlib doc/NEWS.* README \ debian/README.mathlib dh_installdocs -pr-base-core-dbg dh_installexamples -pr-mathlib src/nmath/standalone/test.c #dh_installmenu -a # (cd /<>/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../../lib/R/doc .) (cd /<>/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../R/doc .) (cd /<>/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../../lib/R/library .) install -p -m 0644 debian/r-base-core.lintian \ /<>/debian/r-base-core/usr/share/lintian/overrides/r-base-core install -p -m 0644 debian/r-recommended.lintian \ /<>/debian/r-recommended/usr/share/lintian/overrides/r-recommended install -p -m 0644 debian/r-mathlib.lintian \ /<>/debian/r-mathlib/usr/share/lintian/overrides/r-mathlib dh_installchangelogs -a -k doc/NEWS dh_strip --dbg-package=r-base-core-dbg Can't stat debian/r-base: No such file or directory at /usr/bin/dh_strip line 381. 73e4425a5c535317d2fc0a42ddebc950af89b5ce 73e4425a5c535317d2fc0a42ddebc950af89b5ce 25dbe7d39a6c355d61c5bef4bea70fe3d364ab7b b58dd1aecbbeafbd2e2bd18070fb4dd93d9df70e c8385dac6d897e2247e2ee38c30bbb38f8616756 b44b1640e93922b4bd8ccb23a5c03229f59cb267 c46973bf88c9e1cbf51b3458d3339575cbef934a 79228ad92d54e4337f25309b83cc162aae428410 3ba86cb781b1dea3f3d13b2e1a3637ccd348a913 7e38f2d92e4267fbe410e197d5335ee3f2b7b95e bc3ad39d0cea78bad7163d1433f8beeee7e51a73 b8f7ac7d8fcbca675b1fa73cd1272dc5f75ea35c dfef3f7bfe164a24e80557a0fafb5ac90bf071e1 e0f7dcc092b0b188d323731b29a48511b5b8aecb 41200e9278b714c009a26fd9f789503f1f9c2875 b9a3b301553b034fc12b85e969b9b6c6bc2739f3 9c6d3a6ff4483e27bd5a8e991aef89bdd62c58b7 6a29d3569d188730204c4f8aa41deafce37fa85d a8efd9ed49e17ce69d64f707e45b858bfe69d942 a49a983fd75b2bc08e7958088019fa1ed4768929 dh_compress -a dh_fixperms -a dh_link -a dh_makeshlibs -a dh_installdeb -a dh_perl -a dh_shlibdeps -a -l /<>/debian/r-base-core/usr/lib/R/lib dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libtcl8.6.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libtk8.6.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package r-base-core: substitution variable ${perl:Depends} used, but is not defined dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing r-mathlib (in debian/r-mathlib); do_strip: , oemstrip: pkgstriptranslations: processing r-base-core (in debian/r-base-core); do_strip: , oemstrip: pkgstriptranslations: processing r-base-core-dbg (in debian/r-base-core-dbg); do_strip: , oemstrip: debian/r-base-core/usr/share/applications/R.desktop: does not have gettext domain, not stripping pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/r-mathlib/DEBIAN/control, package r-mathlib, directory debian/r-mathlib .. removing usr/share/doc/r-mathlib/changelog.gz INFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... pkgstripfiles: processing control file: debian/r-base-core/DEBIAN/control, package r-base-core, directory debian/r-base-core .. removing usr/share/doc/r-base-core/changelog.gz pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com INFO: pkgstripfiles: waiting for lock (r-mathlib) ... pkgstripfiles: Truncating usr/share/doc/r-base-core/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 8 cpus) for package r-base-core ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... xargs: warning: options --max-lines and --replace/-I/-i are mutually exclusive, ignoring previous --max-lines value INFO: pkgstripfiles: waiting for lock (r-mathlib) ... WARNING: optipng failed on usr/lib/R/library/graphics/help/figures/pch.png, ignoring WARNING: optipng failed on usr/lib/R/library/graphics/help/figures/mai.png, ignoring WARNING: optipng failed on usr/lib/R/library/graphics/help/figures/oma.png, ignoring ..INFO: pkgstripfiles: waiting for lock (r-mathlib) ... pkgstripfiles: processing control file: debian/r-base-core-dbg/DEBIAN/control, package r-base-core-dbg, directory debian/r-base-core-dbg INFO: pkgstripfiles: waiting for lock (r-mathlib) ... .. removing usr/share/doc/r-base-core-dbg/changelog.gz INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... oINFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... oINFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... oINFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... oINFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... ooINFO: pkgstripfiles: waiting for lock (r-mathlib) ... oINFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... o INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... INFO: pkgstripfiles: waiting for lock (r-mathlib) ... pkgstripfiles: PNG optimization (8/0) for package r-base-core took 34 s dpkg-deb: building package 'r-base-core' in '../r-base-core_4.1.2-1ubuntu1_riscv64.deb'. INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... pkgstripfiles: Truncating usr/share/doc/r-mathlib/changelog.Debian.gz to topmost ten records INFO: pkgstripfiles: waiting for lock (r-base-core-dbg) ... pkgstripfiles: Running PNG optimization (using 8 cpus) for package r-mathlib ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-mathlib' in '../r-mathlib_4.1.2-1ubuntu1_riscv64.deb'. Searching for duplicated docs in dependency r-base-core... symlinking changelog.Debian.gz in r-base-core-dbg to file in r-base-core pkgstripfiles: Running PNG optimization (using 8 cpus) for package r-base-core-dbg ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-base-core-dbg' in '../r-base-core-dbg_4.1.2-1ubuntu1_riscv64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../r-base_4.1.2-1ubuntu1_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-11-09T16:30:18Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-base_4.1.2-1ubuntu1_riscv64.changes: -------------------------------------- Format: 1.8 Date: Tue, 09 Nov 2021 12:11:18 +0000 Source: r-base Binary: r-base-core r-base-core-dbg r-mathlib Built-For-Profiles: noudeb Architecture: riscv64 Version: 4.1.2-1ubuntu1 Distribution: jammy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Dimitri John Ledkov Description: r-base-core - GNU R core of statistical computation and graphics system r-base-core-dbg - GNU R debug symbols for statistical comp. language and environmen r-mathlib - GNU R standalone mathematics library Launchpad-Bugs-Fixed: 1950283 Changes: r-base (4.1.2-1ubuntu1) jammy; urgency=medium . * Drop adding -std=gnu99, as R needs at least C11 compiler by default and adds -std=gnu11 which then lowers the standard than what gcc default is. * Turn off LTO as it missbuilds R with HAVE_FORTRAN_DOUBLE_COMPLEX not defined. LP: #1950283 Checksums-Sha1: ec6d4be250b381b8509c78f35fc5d129904a6895 6426552 r-base-core-dbg_4.1.2-1ubuntu1_riscv64.deb 28f7fb002a1f0cea303b3f662f71cdf04ca388ad 25646056 r-base-core_4.1.2-1ubuntu1_riscv64.deb 87db99f15ed194f72e8bb1a3e67bb0d8ec28dfce 15370 r-base_4.1.2-1ubuntu1_riscv64.buildinfo 5416d11a2c05915c272c25ac0c90c70bd22f0de5 2318734 r-mathlib_4.1.2-1ubuntu1_riscv64.deb Checksums-Sha256: 02df80eac1cfd94a970e46d1a264152c8ee055470eee5fa663d8d0e72d838f6c 6426552 r-base-core-dbg_4.1.2-1ubuntu1_riscv64.deb 9e65a266f9091aa589d81d86e3e0041b0395502b8bb9b77a822709d023e26be3 25646056 r-base-core_4.1.2-1ubuntu1_riscv64.deb f330426d5494ef908bfa353369bc7ad17b0133d6f98e6c9d24624c931197f709 15370 r-base_4.1.2-1ubuntu1_riscv64.buildinfo b0ee3b1d1c513f42030dc76c0b2a7528f1f41843b716ef9efce01d4a1280aeef 2318734 r-mathlib_4.1.2-1ubuntu1_riscv64.deb Files: 1b48924bba1d62bb11ac0e9cde7ba73e 6426552 debug optional r-base-core-dbg_4.1.2-1ubuntu1_riscv64.deb 64fb8f95ce99fe97a417ffe80fa1ed3b 25646056 gnu-r optional r-base-core_4.1.2-1ubuntu1_riscv64.deb 6155709eea60424565881137cc2f7726 15370 gnu-r optional r-base_4.1.2-1ubuntu1_riscv64.buildinfo 5155436855a8e5177dc9334b9e7ca899 2318734 gnu-r optional r-mathlib_4.1.2-1ubuntu1_riscv64.deb Original-Maintainer: Dirk Eddelbuettel /<>/r-base_4.1.2-1ubuntu1_riscv64.changes.new could not be renamed to /<>/r-base_4.1.2-1ubuntu1_riscv64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: r-base Binary: r-base-core r-base-core-dbg r-mathlib Architecture: riscv64 Version: 4.1.2-1ubuntu1 Checksums-Md5: 1b48924bba1d62bb11ac0e9cde7ba73e 6426552 r-base-core-dbg_4.1.2-1ubuntu1_riscv64.deb 64fb8f95ce99fe97a417ffe80fa1ed3b 25646056 r-base-core_4.1.2-1ubuntu1_riscv64.deb 5155436855a8e5177dc9334b9e7ca899 2318734 r-mathlib_4.1.2-1ubuntu1_riscv64.deb Checksums-Sha1: ec6d4be250b381b8509c78f35fc5d129904a6895 6426552 r-base-core-dbg_4.1.2-1ubuntu1_riscv64.deb 28f7fb002a1f0cea303b3f662f71cdf04ca388ad 25646056 r-base-core_4.1.2-1ubuntu1_riscv64.deb 5416d11a2c05915c272c25ac0c90c70bd22f0de5 2318734 r-mathlib_4.1.2-1ubuntu1_riscv64.deb Checksums-Sha256: 02df80eac1cfd94a970e46d1a264152c8ee055470eee5fa663d8d0e72d838f6c 6426552 r-base-core-dbg_4.1.2-1ubuntu1_riscv64.deb 9e65a266f9091aa589d81d86e3e0041b0395502b8bb9b77a822709d023e26be3 25646056 r-base-core_4.1.2-1ubuntu1_riscv64.deb b0ee3b1d1c513f42030dc76c0b2a7528f1f41843b716ef9efce01d4a1280aeef 2318734 r-mathlib_4.1.2-1ubuntu1_riscv64.deb Build-Origin: Ubuntu Build-Architecture: riscv64 Build-Date: Tue, 09 Nov 2021 16:30:06 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1ubuntu1), autopoint (= 0.21-4ubuntu3), autotools-dev (= 20180224.1+nmu1), base-files (= 12ubuntu2), base-passwd (= 3.5.52), bash (= 5.1-3ubuntu2), bash-completion (= 1:2.11-4ubuntu1), binutils (= 2.37-7ubuntu1), binutils-common (= 2.37-7ubuntu1), binutils-riscv64-linux-gnu (= 2.37-7ubuntu1), bison (= 2:3.8.2+dfsg-1), bsdextrautils (= 2.37.2-4ubuntu1), bsdutils (= 1:2.37.2-4ubuntu1), build-essential (= 12.9ubuntu2), bzip2 (= 1.0.8-4ubuntu4), ca-certificates (= 20211016), ca-certificates-java (= 20190909), coreutils (= 8.32-4ubuntu3), cpp (= 4:11.2.0-1ubuntu1), cpp-11 (= 11.2.0-10ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-3), debconf (= 1.5.79), debhelper (= 13.3.4ubuntu3), debianutils (= 5.5-1), debugedit (= 1:5.0-0ubuntu2), default-jdk (= 2:1.11-72build1), default-jdk-headless (= 2:1.11-72build1), default-jre (= 2:1.11-72build1), default-jre-headless (= 2:1.11-72build1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.12.0-2), diffutils (= 1:3.8-0ubuntu1), dpkg (= 1.20.9ubuntu2), dpkg-dev (= 1.20.9ubuntu2), dwz (= 0.14-1build1), file (= 1:5.39-3build1), findutils (= 4.8.0-1ubuntu2), fontconfig (= 2.13.1-4.2ubuntu4), fontconfig-config (= 2.13.1-4.2ubuntu4), fonts-dejavu-core (= 2.37-2build1), fonts-lmodern (= 2.004.5-6.1), g++ (= 4:11.2.0-1ubuntu1), g++-11 (= 11.2.0-10ubuntu1), gcc (= 4:11.2.0-1ubuntu1), gcc-11 (= 11.2.0-10ubuntu1), gcc-11-base (= 11.2.0-10ubuntu1), gettext (= 0.21-4ubuntu3), gettext-base (= 0.21-4ubuntu3), gfortran (= 4:11.2.0-1ubuntu1), gfortran-11 (= 11.2.0-10ubuntu1), gir1.2-freedesktop (= 1.70.0-2ubuntu1), gir1.2-glib-2.0 (= 1.70.0-2ubuntu1), gir1.2-harfbuzz-0.0 (= 2.7.4-1ubuntu2), gir1.2-pango-1.0 (= 1.48.10+ds1-1), grep (= 3.7-1), groff-base (= 1.22.4-7), gzip (= 1.10-4ubuntu2), hostname (= 3.23ubuntu1), icu-devtools (= 67.1-7ubuntu1), init-system-helpers (= 1.60build1), intltool-debian (= 0.35.0+20060710.5), java-common (= 0.72build1), libacl1 (= 2.2.53-10ubuntu2), libapache-pom-java (= 18-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.2.0-10ubuntu1), libasound2 (= 1.2.4-1.1ubuntu4), libasound2-data (= 1.2.4-1.1ubuntu4), libatomic1 (= 11.2.0-10ubuntu1), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0-2ubuntu3), libaudit1 (= 1:3.0-2ubuntu3), libavahi-client3 (= 0.8-5ubuntu4), libavahi-common-data (= 0.8-5ubuntu4), libavahi-common3 (= 0.8-5ubuntu4), libbinutils (= 2.37-7ubuntu1), libblas-dev (= 3.9.0-3ubuntu3), libblas3 (= 3.9.0-3ubuntu3), libblkid-dev (= 2.37.2-4ubuntu1), libblkid1 (= 2.37.2-4ubuntu1), libbrotli-dev (= 1.0.9-2build4), libbrotli1 (= 1.0.9-2build4), libbsd0 (= 0.11.3-1ubuntu3), libbz2-1.0 (= 1.0.8-4ubuntu4), libbz2-dev (= 1.0.8-4ubuntu4), libc-bin (= 2.34-0ubuntu3), libc-dev-bin (= 2.34-0ubuntu3), libc6 (= 2.34-0ubuntu3), libc6-dev (= 2.34-0ubuntu3), libcairo-gobject2 (= 1.16.0-5ubuntu2), libcairo-script-interpreter2 (= 1.16.0-5ubuntu2), libcairo2 (= 1.16.0-5ubuntu2), libcairo2-dev (= 1.16.0-5ubuntu2), libcap-ng0 (= 0.7.9-2.2build2), libcap2 (= 1:2.44-1build2), libcc1-0 (= 11.2.0-10ubuntu1), libcom-err2 (= 1.46.4-1ubuntu1), libcommons-logging-java (= 1.2-2), libcommons-parent-java (= 43-1), libcrypt-dev (= 1:4.4.18-4ubuntu2), libcrypt1 (= 1:4.4.18-4ubuntu2), libctf-nobfd0 (= 2.37-7ubuntu1), libctf0 (= 2.37-7ubuntu1), libcups2 (= 2.3.3op2-7ubuntu2), libcurl4 (= 7.74.0-1.3ubuntu2), libcurl4-openssl-dev (= 7.74.0-1.3ubuntu2), libdatrie-dev (= 0.2.13-1ubuntu3), libdatrie1 (= 0.2.13-1ubuntu3), libdb5.3 (= 5.3.28+dfsg1-0.8ubuntu2), libdbus-1-3 (= 1.12.20-2ubuntu2), libdebconfclient0 (= 0.256ubuntu4), libdebhelper-perl (= 13.3.4ubuntu3), libdeflate-dev (= 1.7-2ubuntu2), libdeflate0 (= 1.7-2ubuntu2), libdpkg-perl (= 1.20.9ubuntu2), libdrm-amdgpu1 (= 2.4.107-8ubuntu1), libdrm-common (= 2.4.107-8ubuntu1), libdrm-nouveau2 (= 2.4.107-8ubuntu1), libdrm-radeon1 (= 2.4.107-8ubuntu1), libdrm2 (= 2.4.107-8ubuntu1), libdw1 (= 0.185-2), libedit2 (= 3.1-20210910-1), libelf1 (= 0.185-2), libexpat1 (= 2.4.1-3), libexpat1-dev (= 2.4.1-3), libffi-dev (= 3.4.2-1ubuntu5), libffi8 (= 3.4.2-1ubuntu5), libfile-stripnondeterminism-perl (= 1.12.0-2), libfontbox-java (= 1:1.8.16-2), libfontconfig-dev (= 2.13.1-4.2ubuntu4), libfontconfig1 (= 2.13.1-4.2ubuntu4), libfontconfig1-dev (= 2.13.1-4.2ubuntu4), libfontenc1 (= 1:1.1.4-1build2), libfreetype-dev (= 2.11.0+dfsg-1), libfreetype6 (= 2.11.0+dfsg-1), libfreetype6-dev (= 2.11.0+dfsg-1), libfribidi-dev (= 1.0.8-2ubuntu2), libfribidi0 (= 1.0.8-2ubuntu2), libgcc-11-dev (= 11.2.0-10ubuntu1), libgcc-s1 (= 11.2.0-10ubuntu1), libgcrypt20 (= 1.9.4-3ubuntu2), libgdbm-compat4 (= 1.22-1), libgdbm6 (= 1.22-1), libgfortran-11-dev (= 11.2.0-10ubuntu1), libgfortran5 (= 11.2.0-10ubuntu1), libgif7 (= 5.1.9-2build1), libgirepository-1.0-1 (= 1.70.0-2ubuntu1), libgl1 (= 1.3.4-2), libgl1-mesa-dri (= 21.2.2-1ubuntu1), libglapi-mesa (= 21.2.2-1ubuntu1), libglib2.0-0 (= 2.70.1-1), libglib2.0-bin (= 2.70.1-1), libglib2.0-data (= 2.70.1-1), libglib2.0-dev (= 2.70.1-1), libglib2.0-dev-bin (= 2.70.1-1), libglvnd0 (= 1.3.4-2), libglx-mesa0 (= 21.2.2-1ubuntu1), libglx0 (= 1.3.4-2), libgmp10 (= 2:6.2.1+dfsg-1ubuntu3), libgnutls30 (= 3.7.2-2ubuntu1), libgomp1 (= 11.2.0-10ubuntu1), libgpg-error0 (= 1.42-3), libgraphite2-3 (= 1.3.14-1build1), libgraphite2-dev (= 1.3.14-1build1), libgssapi-krb5-2 (= 1.18.3-7), libharfbuzz-dev (= 2.7.4-1ubuntu2), libharfbuzz-gobject0 (= 2.7.4-1ubuntu2), libharfbuzz-icu0 (= 2.7.4-1ubuntu2), libharfbuzz0b (= 2.7.4-1ubuntu2), libhogweed6 (= 3.7.3-1build1), libice-dev (= 2:1.0.10-1build1), libice6 (= 2:1.0.10-1build1), libicu-dev (= 67.1-7ubuntu1), libicu67 (= 67.1-7ubuntu1), libidn2-0 (= 2.3.2-2), libisl23 (= 0.24-2), libjbig-dev (= 2.1-3.1build2), libjbig0 (= 2.1-3.1build2), libjpeg-dev (= 8c-2ubuntu8), libjpeg-turbo8 (= 2.0.6-0ubuntu3), libjpeg-turbo8-dev (= 2.0.6-0ubuntu3), libjpeg8 (= 8c-2ubuntu8), libjpeg8-dev (= 8c-2ubuntu8), libjs-jquery (= 3.5.1+dfsg+~3.5.5-8), libk5crypto3 (= 1.18.3-7), libkeyutils1 (= 1.6.1-2ubuntu2), libkpathsea6 (= 2021.20210626.59705-1), libkrb5-3 (= 1.18.3-7), libkrb5support0 (= 1.18.3-7), liblapack-dev (= 3.9.0-3ubuntu3), liblapack3 (= 3.9.0-3ubuntu3), liblcms2-2 (= 2.12~rc1-2build1), libldap-2.5-0 (= 2.5.6+dfsg-1~exp1ubuntu1), libllvm12 (= 1:12.0.1-16), liblz4-1 (= 1.9.3-2build1), liblzma-dev (= 5.2.5-2build1), liblzma5 (= 5.2.5-2build1), liblzo2-2 (= 2.10-2build2), libmagic-mgc (= 1:5.39-3build1), libmagic1 (= 1:5.39-3build1), libmd0 (= 1.0.4-1), libmime-charset-perl (= 1.012.2-1), libmount-dev (= 2.37.2-4ubuntu1), libmount1 (= 2.37.2-4ubuntu1), libmpc3 (= 1.2.1-1), libmpdec3 (= 2.5.1-2build1), libmpfr6 (= 4.1.0-3build2), libncurses-dev (= 6.2+20210905-1), libncurses5-dev (= 6.2+20210905-1), libncurses6 (= 6.2+20210905-1), libncursesw6 (= 6.2+20210905-1), libnettle8 (= 3.7.3-1build1), libnghttp2-14 (= 1.43.0-1build1), libnsl-dev (= 1.3.0-2build1), libnsl2 (= 1.3.0-2build1), libnspr4 (= 2:4.32-1), libnss3 (= 2:3.68-1ubuntu1), libp11-kit0 (= 0.24.0-5), libpam-modules (= 1.4.0-10ubuntu1), libpam-modules-bin (= 1.4.0-10ubuntu1), libpam-runtime (= 1.4.0-10ubuntu1), libpam0g (= 1.4.0-10ubuntu1), libpango-1.0-0 (= 1.48.10+ds1-1), libpango1.0-dev (= 1.48.10+ds1-1), libpangocairo-1.0-0 (= 1.48.10+ds1-1), libpangoft2-1.0-0 (= 1.48.10+ds1-1), libpangoxft-1.0-0 (= 1.48.10+ds1-1), libpaper-utils (= 1.1.28build1), libpaper1 (= 1.1.28build1), libpcre16-3 (= 2:8.39-13build4), libpcre2-16-0 (= 10.37-0ubuntu2), libpcre2-32-0 (= 10.37-0ubuntu2), libpcre2-8-0 (= 10.37-0ubuntu2), libpcre2-dev (= 10.37-0ubuntu2), libpcre2-posix3 (= 10.37-0ubuntu2), libpcre3 (= 2:8.39-13build4), libpcre3-dev (= 2:8.39-13build4), libpcre32-3 (= 2:8.39-13build4), libpcrecpp0v5 (= 2:8.39-13build4), libpcsclite1 (= 1.9.4-1), libpdfbox-java (= 1:1.8.16-2), libperl5.32 (= 5.32.1-3ubuntu3), libpipeline1 (= 1.5.4-1), libpixman-1-0 (= 0.40.0-1build3), libpixman-1-dev (= 0.40.0-1build3), libpng-dev (= 1.6.37-3build4), libpng16-16 (= 1.6.37-3build4), libpsl5 (= 0.21.0-1.2build1), libptexenc1 (= 2021.20210626.59705-1), libpthread-stubs0-dev (= 0.4-1build1), libpython3-stdlib (= 3.9.7-4), libpython3.9-minimal (= 3.9.8-1), libpython3.9-stdlib (= 3.9.8-1), libreadline-dev (= 8.1-2build1), libreadline8 (= 8.1-2build1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build3), libsasl2-2 (= 2.1.27+dfsg-2.3), libsasl2-modules-db (= 2.1.27+dfsg-2.3), libselinux1 (= 3.1-3build3), libselinux1-dev (= 3.1-3build3), libsensors-config (= 1:3.6.0-7build1), libsensors5 (= 1:3.6.0-7build1), libsepol1 (= 3.1-1ubuntu2), libsepol1-dev (= 3.1-1ubuntu2), libsigsegv2 (= 2.13-1ubuntu2), libsm-dev (= 2:1.2.3-1build1), libsm6 (= 2:1.2.3-1build1), libsmartcols1 (= 2.37.2-4ubuntu1), libsombok3 (= 2.4.0-2), libsqlite3-0 (= 3.36.0-2), libssh-4 (= 0.9.6-1), libssl1.1 (= 1.1.1l-1ubuntu1), libstdc++-11-dev (= 11.2.0-10ubuntu1), libstdc++6 (= 11.2.0-10ubuntu1), libsub-override-perl (= 0.09-2), libsynctex2 (= 2021.20210626.59705-1), libsystemd0 (= 248.3-1ubuntu8), libtasn1-6 (= 4.17.0-2), libtcl8.6 (= 8.6.12+dfsg-1), libteckit0 (= 2.5.10+ds1-3), libtexlua53 (= 2021.20210626.59705-1), libtext-unidecode-perl (= 1.30-1), libthai-data (= 0.1.28-4.1), libthai-dev (= 0.1.28-4.1), libthai0 (= 0.1.28-4.1), libtiff-dev (= 4.3.0-2), libtiff5 (= 4.3.0-2), libtiff5-dev (= 4.3.0-2), libtiffxx5 (= 4.3.0-2), libtinfo6 (= 6.2+20210905-1), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtk8.6 (= 8.6.12-1), libtool (= 2.4.6-15build1), libuchardet0 (= 0.0.7-1build1), libudev1 (= 248.3-1ubuntu8), libunicode-linebreak-perl (= 0.0.20190101-1build2), libunistring2 (= 0.9.10-6), libuuid1 (= 2.37.2-4ubuntu1), libvulkan1 (= 1.2.189.0-2), libwebp6 (= 0.6.1-2.1build1), libx11-6 (= 2:1.7.2-2), libx11-data (= 2:1.7.2-2), libx11-dev (= 2:1.7.2-2), libx11-xcb1 (= 2:1.7.2-2), libxau-dev (= 1:1.0.9-1build4), libxau6 (= 1:1.0.9-1build4), libxaw7 (= 2:1.0.13-1.1build1), libxcb-dri2-0 (= 1.14-3ubuntu2), libxcb-dri3-0 (= 1.14-3ubuntu2), libxcb-glx0 (= 1.14-3ubuntu2), libxcb-present0 (= 1.14-3ubuntu2), libxcb-render0 (= 1.14-3ubuntu2), libxcb-render0-dev (= 1.14-3ubuntu2), libxcb-shm0 (= 1.14-3ubuntu2), libxcb-shm0-dev (= 1.14-3ubuntu2), libxcb-sync1 (= 1.14-3ubuntu2), libxcb-xfixes0 (= 1.14-3ubuntu2), libxcb1 (= 1.14-3ubuntu2), libxcb1-dev (= 1.14-3ubuntu2), libxdmcp-dev (= 1:1.1.3-0ubuntu4), libxdmcp6 (= 1:1.1.3-0ubuntu4), libxext-dev (= 2:1.3.4-0ubuntu4), libxext6 (= 2:1.3.4-0ubuntu4), libxfixes3 (= 1:5.0.3-2build2), libxfont2 (= 1:2.0.4-1build3), libxft-dev (= 2.3.3-0ubuntu4), libxft2 (= 2.3.3-0ubuntu4), libxi6 (= 2:1.8-1), libxkbfile1 (= 1:1.1.0-1build2), libxml-libxml-perl (= 2.0134+dfsg-2build2), libxml-namespacesupport-perl (= 1.12-1.1), libxml-sax-base-perl (= 1.09-1.1), libxml-sax-perl (= 1.02+dfsg-3), libxml2 (= 2.9.12+dfsg-5), libxmu6 (= 2:1.1.3-0ubuntu2), libxmuu1 (= 2:1.1.3-0ubuntu2), libxpm4 (= 1:3.5.12-1build1), libxrender-dev (= 1:0.9.10-1build3), libxrender1 (= 1:0.9.10-1build3), libxshmfence1 (= 1.3-1build3), libxss-dev (= 1:1.2.3-1build1), libxss1 (= 1:1.2.3-1build1), libxt-dev (= 1:1.2.0-1build1), libxt6 (= 1:1.2.0-1build1), libxtst6 (= 2:1.2.3-1build3), libxxf86vm1 (= 1:1.1.4-1build2), libzstd1 (= 1.4.8+dfsg-3), libzzip-0-13 (= 0.13.72+dfsg.1-1.1), linux-libc-dev (= 5.13.0-19.19), lmodern (= 2.004.5-6.1), login (= 1:4.8.1-1ubuntu9), lsb-base (= 11.1.0ubuntu3), lto-disabled-list (= 16), m4 (= 1.4.18-5ubuntu1), make (= 4.3-4ubuntu2), man-db (= 2.9.4-2build1), mawk (= 1.3.4.20200120-2build1), media-types (= 4.0.0), mpack (= 1.6-18), ncurses-base (= 6.2+20210905-1), ncurses-bin (= 6.2+20210905-1), openjdk-11-jdk (= 11.0.13+8-0ubuntu1), openjdk-11-jdk-headless (= 11.0.13+8-0ubuntu1), openjdk-11-jre (= 11.0.13+8-0ubuntu1), openjdk-11-jre-headless (= 11.0.13+8-0ubuntu1), openssl (= 1.1.1l-1ubuntu1), pango1.0-tools (= 1.48.10+ds1-1), patch (= 2.7.6-7build1), perl (= 5.32.1-3ubuntu3), perl-base (= 5.32.1-3ubuntu3), perl-modules-5.32 (= 5.32.1-3ubuntu3), pkg-config (= 0.29.2-1ubuntu2), po-debconf (= 1.0.21+nmu1), preview-latex-style (= 12.2-1ubuntu1), python3 (= 3.9.7-4), python3-distutils (= 3.9.7-1), python3-lib2to3 (= 3.9.7-1), python3-minimal (= 3.9.7-4), python3.9 (= 3.9.8-1), python3.9-minimal (= 3.9.8-1), readline-common (= 8.1-2build1), rpcsvc-proto (= 1.4.2-0ubuntu5), sed (= 4.7-1ubuntu2), sensible-utils (= 0.0.17), sysvinit-utils (= 2.96-7ubuntu2), t1utils (= 1.41-4build1), tar (= 1.34+dfsg-1build2), tcl8.6 (= 8.6.12+dfsg-1), tcl8.6-dev (= 8.6.12+dfsg-1), tex-common (= 6.17), texinfo (= 6.7.0.dfsg.2-6build1), texlive-base (= 2021.20210921-1), texlive-binaries (= 2021.20210626.59705-1), texlive-extra-utils (= 2021.20210921-1), texlive-fonts-extra (= 2021.20210921-1), texlive-fonts-recommended (= 2021.20210921-1), texlive-latex-base (= 2021.20210921-1), texlive-latex-extra (= 2021.20210921-1), texlive-latex-recommended (= 2021.20210921-1), texlive-luatex (= 2021.20210921-1), texlive-pictures (= 2021.20210921-1), texlive-plain-generic (= 2021.20210921-1), tk8.6 (= 8.6.12-1), tk8.6-dev (= 8.6.12-1), tzdata (= 2021e-1ubuntu1), ucf (= 3.0043), util-linux (= 2.37.2-4ubuntu1), uuid-dev (= 2.37.2-4ubuntu1), x11-common (= 1:7.7+23ubuntu1), x11-xkb-utils (= 7.7+5build3), x11proto-core-dev (= 2021.5-1), x11proto-dev (= 2021.5-1), xauth (= 1:1.1-1build1), xdg-utils (= 1.1.3-2ubuntu2), xfonts-base (= 1:1.0.5), xfonts-encodings (= 1:1.0.5-0ubuntu1), xfonts-utils (= 1:7.7+6build1), xkb-data (= 2.33-1), xorg-sgml-doctools (= 1:1.11-1.1), xserver-common (= 2:1.20.13-1ubuntu1), xtrans-dev (= 1.4.0-1), xvfb (= 2:1.20.13-1ubuntu1), xz-utils (= 5.2.5-2build1), zlib1g (= 1:1.2.11.dfsg-2ubuntu7), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu7) Environment: DEB_BUILD_OPTIONS="nocheck parallel=8" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1636459878" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-base-core-dbg_4.1.2-1ubuntu1_riscv64.deb ------------------------------------------ new Debian package, version 2.0. size 6426552 bytes: control archive=2246 bytes. 2659 bytes, 40 lines control 2088 bytes, 20 lines md5sums Package: r-base-core-dbg Source: r-base Version: 4.1.2-1ubuntu1 Architecture: riscv64 Maintainer: Ubuntu Developers Installed-Size: 6760 Depends: r-base-core (= 4.1.2-1ubuntu1), r-base-dev (= 4.1.2-1ubuntu1) Section: debug Priority: optional Homepage: http://www.r-project.org/ Description: GNU R debug symbols for statistical comp. language and environment R is a system for statistical computation and graphics. It consists of a language plus a run-time environment with graphics, a debugger, access to certain system functions, and the ability to run programs stored in script files. . The design of R has been heavily influenced by two existing languages: Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the resulting language is very similar in appearance to S, the underlying implementation and semantics are derived from Scheme. . The core of R is an interpreted computer language which allows branching and looping as well as modular programming using functions. Most of the user-visible functions in R are written in R. It is possible for the user to interface to procedures written in the C, C++, or FORTRAN languages for efficiency, and many of R's core functions do so. The R distribution contains functionality for a large number of statistical procedures and underlying applied math computations. There is also a large set of functions which provide a flexible graphical environment for creating various kinds of data presentations. . Additionally, several thousand extension "packages" are available from CRAN, the Comprehensive R Archive Network, many also as Debian packages, named 'r-cran-'. . This package contains debugging symbol tables for the binaries and dynamic libraries in the r-base-core package. Build-Ids: 25dbe7d39a6c355d61c5bef4bea70fe3d364ab7b 3ba86cb781b1dea3f3d13b2e1a3637ccd348a913 41200e9278b714c009a26fd9f789503f1f9c2875 6a29d3569d188730204c4f8aa41deafce37fa85d 73e4425a5c535317d2fc0a42ddebc950af89b5ce 79228ad92d54e4337f25309b83cc162aae428410 7e38f2d92e4267fbe410e197d5335ee3f2b7b95e 9c6d3a6ff4483e27bd5a8e991aef89bdd62c58b7 a49a983fd75b2bc08e7958088019fa1ed4768929 a8efd9ed49e17ce69d64f707e45b858bfe69d942 b44b1640e93922b4bd8ccb23a5c03229f59cb267 b58dd1aecbbeafbd2e2bd18070fb4dd93d9df70e b8f7ac7d8fcbca675b1fa73cd1272dc5f75ea35c b9a3b301553b034fc12b85e969b9b6c6bc2739f3 bc3ad39d0cea78bad7163d1433f8beeee7e51a73 c46973bf88c9e1cbf51b3458d3339575cbef934a c8385dac6d897e2247e2ee38c30bbb38f8616756 dfef3f7bfe164a24e80557a0fafb5ac90bf071e1 e0f7dcc092b0b188d323731b29a48511b5b8aecb Original-Maintainer: Dirk Eddelbuettel drwxr-xr-x root/root 0 2021-11-09 12:11 ./ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/debug/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/debug/.build-id/25/ -rw-r--r-- root/root 6992 2021-11-09 12:11 ./usr/lib/debug/.build-id/25/dbe7d39a6c355d61c5bef4bea70fe3d364ab7b.debug drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/debug/.build-id/3b/ -rw-r--r-- root/root 45920 2021-11-09 12:11 ./usr/lib/debug/.build-id/3b/a86cb781b1dea3f3d13b2e1a3637ccd348a913.debug drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/debug/.build-id/41/ -rw-r--r-- root/root 128704 2021-11-09 12:11 ./usr/lib/debug/.build-id/41/200e9278b714c009a26fd9f789503f1f9c2875.debug drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/debug/.build-id/6a/ -rw-r--r-- root/root 147416 2021-11-09 12:11 ./usr/lib/debug/.build-id/6a/29d3569d188730204c4f8aa41deafce37fa85d.debug drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/debug/.build-id/73/ -rw-r--r-- root/root 13448 2021-11-09 12:11 ./usr/lib/debug/.build-id/73/e4425a5c535317d2fc0a42ddebc950af89b5ce.debug drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/debug/.build-id/79/ -rw-r--r-- root/root 73432 2021-11-09 12:11 ./usr/lib/debug/.build-id/79/228ad92d54e4337f25309b83cc162aae428410.debug drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/debug/.build-id/7e/ -rw-r--r-- root/root 51464 2021-11-09 12:11 ./usr/lib/debug/.build-id/7e/38f2d92e4267fbe410e197d5335ee3f2b7b95e.debug drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/debug/.build-id/9c/ -rw-r--r-- root/root 70704 2021-11-09 12:11 ./usr/lib/debug/.build-id/9c/6d3a6ff4483e27bd5a8e991aef89bdd62c58b7.debug drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/debug/.build-id/a4/ -rw-r--r-- root/root 217880 2021-11-09 12:11 ./usr/lib/debug/.build-id/a4/9a983fd75b2bc08e7958088019fa1ed4768929.debug drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/debug/.build-id/a8/ -rw-r--r-- root/root 76344 2021-11-09 12:11 ./usr/lib/debug/.build-id/a8/efd9ed49e17ce69d64f707e45b858bfe69d942.debug drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/debug/.build-id/b4/ -rw-r--r-- root/root 280208 2021-11-09 12:11 ./usr/lib/debug/.build-id/b4/4b1640e93922b4bd8ccb23a5c03229f59cb267.debug drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/debug/.build-id/b5/ -rw-r--r-- root/root 4085168 2021-11-09 12:11 ./usr/lib/debug/.build-id/b5/8dd1aecbbeafbd2e2bd18070fb4dd93d9df70e.debug drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/debug/.build-id/b8/ -rw-r--r-- root/root 190720 2021-11-09 12:11 ./usr/lib/debug/.build-id/b8/f7ac7d8fcbca675b1fa73cd1272dc5f75ea35c.debug drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/debug/.build-id/b9/ -rw-r--r-- root/root 163136 2021-11-09 12:11 ./usr/lib/debug/.build-id/b9/a3b301553b034fc12b85e969b9b6c6bc2739f3.debug drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/debug/.build-id/bc/ -rw-r--r-- root/root 742400 2021-11-09 12:11 ./usr/lib/debug/.build-id/bc/3ad39d0cea78bad7163d1433f8beeee7e51a73.debug drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/debug/.build-id/c4/ -rw-r--r-- root/root 36288 2021-11-09 12:11 ./usr/lib/debug/.build-id/c4/6973bf88c9e1cbf51b3458d3339575cbef934a.debug drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/debug/.build-id/c8/ -rw-r--r-- root/root 70664 2021-11-09 12:11 ./usr/lib/debug/.build-id/c8/385dac6d897e2247e2ee38c30bbb38f8616756.debug drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/debug/.build-id/df/ -rw-r--r-- root/root 384672 2021-11-09 12:11 ./usr/lib/debug/.build-id/df/ef3f7bfe164a24e80557a0fafb5ac90bf071e1.debug drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/debug/.build-id/e0/ -rw-r--r-- root/root 12160 2021-11-09 12:11 ./usr/lib/debug/.build-id/e0/f7dcc092b0b188d323731b29a48511b5b8aecb.debug drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/doc/r-base-core-dbg/ lrwxrwxrwx root/root 0 2021-11-09 12:11 ./usr/share/doc/r-base-core-dbg/NEWS.gz -> changelog.gz lrwxrwxrwx root/root 0 2021-11-09 12:11 ./usr/share/doc/r-base-core-dbg/changelog.Debian.gz -> ../r-base-core/changelog.Debian.gz -rw-r--r-- root/root 20761 2021-04-27 12:17 ./usr/share/doc/r-base-core-dbg/copyright drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/lintian/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/lintian/overrides/ r-base-core_4.1.2-1ubuntu1_riscv64.deb -------------------------------------- new Debian package, version 2.0. size 25646056 bytes: control archive=25738 bytes. 93 bytes, 5 lines conffiles 3604 bytes, 46 lines control 76239 bytes, 957 lines md5sums 2772 bytes, 75 lines * postinst #!/bin/sh 214 bytes, 5 lines * postrm #!/bin/sh 864 bytes, 37 lines * preinst #!/bin/sh 886 bytes, 29 lines * prerm #!/bin/sh Package: r-base-core Source: r-base Version: 4.1.2-1ubuntu1 Architecture: riscv64 Maintainer: Ubuntu Developers Installed-Size: 39038 Depends: zip, unzip, libpaper-utils, xdg-utils, libblas3 | libblas.so.3, libbz2-1.0, libc6 (>= 2.34), libcairo2 (>= 1.6.0), libcurl4 (>= 7.28.0), libglib2.0-0 (>= 2.12.0), libgomp1 (>= 4.9), libicu67 (>= 67.1-1~), libjpeg8 (>= 8c), liblapack3 | liblapack.so.3, liblzma5 (>= 5.1.1alpha+20120614), libpango-1.0-0 (>= 1.18.0), libpangocairo-1.0-0 (>= 1.14.0), libpcre2-8-0 (>= 10.22), libpng16-16 (>= 1.6.2-1), libreadline8 (>= 6.0), libtcl8.6 (>= 8.6.0), libtiff5 (>= 4.0.3), libtirpc3 (>= 1.0.2), libtk8.6 (>= 8.6.0), libx11-6, libxt6, zlib1g (>= 1:1.1.4), ucf (>= 3.0), ca-certificates Recommends: r-recommended, r-base-dev, r-doc-html Suggests: elpa-ess, r-doc-info | r-doc-pdf, r-mathlib, r-base-html Conflicts: r-base-latex, r-cran-rcompgen, r-gnome Breaks: r-bioc-graph (<< 1.62.0-1~), r-cran-bbmle (<< 1.0.20-5~), r-cran-biocmanager (<< 1.30.4+dfsg-2~), r-cran-caret (<< 6.0-84-2~), r-cran-cmprsk (<< 2.2-8-1~), r-cran-coin (<< 1.3-0-1~), r-cran-dendextend (<< 1.12.0+dfsg-1~), r-cran-fields (<< 9.8-3-1~), r-cran-filehash (<< 2.4-2-2~), r-cran-future (<< 1.14.0+dfsg-1~), r-cran-genetics (<< 1.3.8.1.2-1~), r-cran-haplo.stats (<< 1.7.9-4~), r-cran-igraph (<< 1.2.4.1-1~), r-cran-lava (<< 1.6.5-1~), r-cran-libcoin (<< 1.0-4-1~), r-cran-msm (<< 1.6.7-1~), r-cran-permute (<< 0.9-5-1~), r-cran-phangorn (<< 2.5.5-1~), r-cran-popepi (<< 0.4.7-1~), r-cran-recipes (<< 0.1.6-1~), r-cran-sp (<< 1:1.3-1-2~), r-cran-spam (<< 2.2-2-1~), r-cran-units (<< 0.6-3-1~), r-cran-vegan (<< 2.5-5+dfsg-1~), r-cran-zelig (<< 5.1.6.1-1~) Replaces: r-base (<= 1.4.1-1), r-base-latex (<= 2.9.2-4), r-cran-rcompgen (<= 0.1-17-1), r-gnome (<= 2.3.1), r-recommended (<< 1.9.0) Provides: r-api-4.0, r-base-latex, r-cran-rcompgen, r-gnome Section: gnu-r Priority: optional Homepage: http://www.r-project.org/ Description: GNU R core of statistical computation and graphics system R is a system for statistical computation and graphics. It consists of a language plus a run-time environment with graphics, a debugger, access to certain system functions, and the ability to run programs stored in script files. . The design of R has been heavily influenced by two existing languages: Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the resulting language is very similar in appearance to S, the underlying implementation and semantics are derived from Scheme. . The core of R is an interpreted computer language which allows branching and looping as well as modular programming using functions. Most of the user-visible functions in R are written in R. It is possible for the user to interface to procedures written in the C, C++, or FORTRAN languages for efficiency, and many of R's core functions do so. The R distribution contains functionality for a large number of statistical procedures and underlying applied math computations. There is also a large set of functions which provide a flexible graphical environment for creating various kinds of data presentations. . Additionally, several thousand extension "packages" are available from CRAN, the Comprehensive R Archive Network, many also as Debian packages, named 'r-cran-'. . This package provides the core GNU R system from which only the optional documentation packages r-base-html, r-doc-html, r-doc-pdf and r-doc-info have been split off to somewhat reduce the size of this package. Original-Maintainer: Dirk Eddelbuettel drwxr-xr-x root/root 0 2021-11-09 12:11 ./ drwxr-xr-x root/root 0 2021-11-09 12:11 ./etc/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./etc/R/ -rw-r--r-- root/root 8678 2021-11-09 12:11 ./etc/R/Makeconf -rw-r--r-- root/root 1640 2021-11-09 12:11 ./etc/R/Renviron.site -rw-r--r-- root/root 988 2021-11-09 12:11 ./etc/R/Rprofile.site -rw-r--r-- root/root 785 2021-11-09 12:11 ./etc/R/ldpaths -rw-r--r-- root/root 1098 2021-11-09 12:11 ./etc/R/repositories drwxr-xr-x root/root 0 2021-11-09 12:11 ./etc/ld.so.conf.d/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/bin/ -rwxr-xr-x root/root 8960 2021-11-09 12:11 ./usr/bin/R -rwxr-xr-x root/root 10312 2021-11-09 12:11 ./usr/bin/Rscript drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/ lrwxrwxrwx root/root 0 2021-11-09 12:11 ./usr/lib/R/COPYING -> ../../share/common-licenses/GPL-2 -rw-r--r-- root/root 46 2021-11-09 12:11 ./usr/lib/R/SVN-REVISION drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/bin/ -rwxr-xr-x root/root 1839 2021-11-09 12:11 ./usr/lib/R/bin/BATCH -rwxr-xr-x root/root 2168 2021-11-09 12:11 ./usr/lib/R/bin/COMPILE -rwxr-xr-x root/root 825 2021-11-09 12:11 ./usr/lib/R/bin/INSTALL -rwxr-xr-x root/root 1324 2021-11-09 12:11 ./usr/lib/R/bin/LINK -rwxr-xr-x root/root 8960 2021-11-09 12:11 ./usr/lib/R/bin/R -rwxr-xr-x root/root 160 2021-11-09 12:11 ./usr/lib/R/bin/REMOVE -rwxr-xr-x root/root 1428 2021-11-09 12:11 ./usr/lib/R/bin/Rcmd -rwxr-xr-x root/root 318 2021-11-09 12:11 ./usr/lib/R/bin/Rd2pdf -rwxr-xr-x root/root 361 2021-11-09 12:11 ./usr/lib/R/bin/Rdconv -rwxr-xr-x root/root 260 2021-11-09 12:11 ./usr/lib/R/bin/Rdiff -rwxr-xr-x root/root 312 2021-11-09 12:11 ./usr/lib/R/bin/Rprof -rwxr-xr-x root/root 10312 2021-11-09 12:11 ./usr/lib/R/bin/Rscript -rwxr-xr-x root/root 157 2021-11-09 12:11 ./usr/lib/R/bin/SHLIB -rwxr-xr-x root/root 320 2021-11-09 12:11 ./usr/lib/R/bin/Stangle -rwxr-xr-x root/root 318 2021-11-09 12:11 ./usr/lib/R/bin/Sweave -rwxr-xr-x root/root 352 2021-11-09 12:11 ./usr/lib/R/bin/build -rwxr-xr-x root/root 319 2021-11-09 12:11 ./usr/lib/R/bin/check -rwxr-xr-x root/root 11895 2021-11-09 12:11 ./usr/lib/R/bin/config drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/bin/exec/ -rwxr-xr-x root/root 6088 2021-11-09 12:11 ./usr/lib/R/bin/exec/R -rwxr-xr-x root/root 14534 2021-11-09 12:11 ./usr/lib/R/bin/javareconf -rwxr-xr-x root/root 350093 2021-11-09 12:11 ./usr/lib/R/bin/libtool -rwxr-xr-x root/root 3496 2021-11-09 12:11 ./usr/lib/R/bin/mkinstalldirs -rwxr-xr-x root/root 483 2021-11-09 12:11 ./usr/lib/R/bin/pager -rwxr-xr-x root/root 4700 2021-11-09 12:11 ./usr/lib/R/bin/rtags drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/etc/ lrwxrwxrwx root/root 0 2021-11-09 12:11 ./usr/lib/R/etc/Makeconf -> /etc/R/Makeconf lrwxrwxrwx root/root 0 2021-11-09 12:11 ./usr/lib/R/etc/Renviron -> /etc/R/Renviron -rw-r--r-- root/root 1989 2021-11-09 12:11 ./usr/lib/R/etc/Renviron.orig lrwxrwxrwx root/root 0 2021-11-09 12:11 ./usr/lib/R/etc/Renviron.site -> /etc/R/Renviron.site -rw-r--r-- root/root 2292 2021-11-09 12:11 ./usr/lib/R/etc/Renviron.ucf lrwxrwxrwx root/root 0 2021-11-09 12:11 ./usr/lib/R/etc/Rprofile.site -> /etc/R/Rprofile.site -rw-r--r-- root/root 234 2021-11-09 12:11 ./usr/lib/R/etc/javaconf lrwxrwxrwx root/root 0 2021-11-09 12:11 ./usr/lib/R/etc/ldpaths -> /etc/R/ldpaths lrwxrwxrwx root/root 0 2021-11-09 12:11 ./usr/lib/R/etc/repositories -> /etc/R/repositories drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/lib/ -rw-r--r-- root/root 2720032 2021-11-09 12:11 ./usr/lib/R/lib/libR.so drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/base/ -rw-r--r-- root/root 956 2021-11-09 12:11 ./usr/lib/R/library/base/CITATION -rw-r--r-- root/root 354 2021-11-09 12:11 ./usr/lib/R/library/base/DESCRIPTION -rw-r--r-- root/root 24231 2021-11-09 12:11 ./usr/lib/R/library/base/INDEX drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/base/Meta/ -rw-r--r-- root/root 22050 2021-11-09 12:11 ./usr/lib/R/library/base/Meta/Rd.rds -rw-r--r-- root/root 265 2021-11-09 12:11 ./usr/lib/R/library/base/Meta/demo.rds -rw-r--r-- root/root 123 2021-11-09 12:11 ./usr/lib/R/library/base/Meta/features.rds -rw-r--r-- root/root 22733 2021-11-09 12:11 ./usr/lib/R/library/base/Meta/hsearch.rds -rw-r--r-- root/root 13219 2021-11-09 12:11 ./usr/lib/R/library/base/Meta/links.rds -rw-r--r-- root/root 547 2021-11-09 12:11 ./usr/lib/R/library/base/Meta/package.rds drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/base/R/ -rw-r--r-- root/root 6469 2021-11-09 12:11 ./usr/lib/R/library/base/R/Rprofile -rw-r--r-- root/root 5152 2021-11-09 12:11 ./usr/lib/R/library/base/R/base -rw-r--r-- root/root 1065283 2021-11-09 12:11 ./usr/lib/R/library/base/R/base.rdb -rw-r--r-- root/root 13737 2021-11-09 12:11 ./usr/lib/R/library/base/R/base.rdx drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/base/demo/ -rw-r--r-- root/root 1179 2021-11-09 12:11 ./usr/lib/R/library/base/demo/error.catching.R -rw-r--r-- root/root 4798 2021-11-09 12:11 ./usr/lib/R/library/base/demo/is.things.R -rw-r--r-- root/root 2115 2021-11-09 12:11 ./usr/lib/R/library/base/demo/recursion.R -rw-r--r-- root/root 1560 2021-11-09 12:11 ./usr/lib/R/library/base/demo/scoping.R drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/base/help/ -rw-r--r-- root/root 34627 2021-11-09 12:11 ./usr/lib/R/library/base/help/AnIndex -rw-r--r-- root/root 12379 2021-11-09 12:11 ./usr/lib/R/library/base/help/aliases.rds -rw-r--r-- root/root 2241233 2021-11-09 12:11 ./usr/lib/R/library/base/help/base.rdb -rw-r--r-- root/root 9051 2021-11-09 12:11 ./usr/lib/R/library/base/help/base.rdx -rw-r--r-- root/root 3133 2021-11-09 12:11 ./usr/lib/R/library/base/help/paths.rds drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/base/html/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/compiler/ -rw-r--r-- root/root 351 2021-11-09 12:11 ./usr/lib/R/library/compiler/DESCRIPTION -rw-r--r-- root/root 43 2021-11-09 12:11 ./usr/lib/R/library/compiler/INDEX drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/compiler/Meta/ -rw-r--r-- root/root 323 2021-11-09 12:11 ./usr/lib/R/library/compiler/Meta/Rd.rds -rw-r--r-- root/root 123 2021-11-09 12:11 ./usr/lib/R/library/compiler/Meta/features.rds -rw-r--r-- root/root 393 2021-11-09 12:11 ./usr/lib/R/library/compiler/Meta/hsearch.rds -rw-r--r-- root/root 227 2021-11-09 12:11 ./usr/lib/R/library/compiler/Meta/links.rds -rw-r--r-- root/root 274 2021-11-09 12:11 ./usr/lib/R/library/compiler/Meta/nsInfo.rds -rw-r--r-- root/root 530 2021-11-09 12:11 ./usr/lib/R/library/compiler/Meta/package.rds -rw-r--r-- root/root 127 2021-11-09 12:11 ./usr/lib/R/library/compiler/NAMESPACE drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/compiler/R/ -rw-r--r-- root/root 1058 2021-11-09 12:11 ./usr/lib/R/library/compiler/R/compiler -rw-r--r-- root/root 197412 2021-11-09 12:11 ./usr/lib/R/library/compiler/R/compiler.rdb -rw-r--r-- root/root 3591 2021-11-09 12:11 ./usr/lib/R/library/compiler/R/compiler.rdx drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/compiler/help/ -rw-r--r-- root/root 174 2021-11-09 12:11 ./usr/lib/R/library/compiler/help/AnIndex -rw-r--r-- root/root 164 2021-11-09 12:11 ./usr/lib/R/library/compiler/help/aliases.rds -rw-r--r-- root/root 8716 2021-11-09 12:11 ./usr/lib/R/library/compiler/help/compiler.rdb -rw-r--r-- root/root 158 2021-11-09 12:11 ./usr/lib/R/library/compiler/help/compiler.rdx -rw-r--r-- root/root 134 2021-11-09 12:11 ./usr/lib/R/library/compiler/help/paths.rds drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/compiler/html/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/datasets/ -rw-r--r-- root/root 343 2021-11-09 12:11 ./usr/lib/R/library/datasets/DESCRIPTION -rw-r--r-- root/root 5688 2021-11-09 12:11 ./usr/lib/R/library/datasets/INDEX drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/datasets/Meta/ -rw-r--r-- root/root 3682 2021-11-09 12:11 ./usr/lib/R/library/datasets/Meta/Rd.rds -rw-r--r-- root/root 2714 2021-11-09 12:11 ./usr/lib/R/library/datasets/Meta/data.rds -rw-r--r-- root/root 123 2021-11-09 12:11 ./usr/lib/R/library/datasets/Meta/features.rds -rw-r--r-- root/root 3280 2021-11-09 12:11 ./usr/lib/R/library/datasets/Meta/hsearch.rds -rw-r--r-- root/root 1386 2021-11-09 12:11 ./usr/lib/R/library/datasets/Meta/links.rds -rw-r--r-- root/root 201 2021-11-09 12:11 ./usr/lib/R/library/datasets/Meta/nsInfo.rds -rw-r--r-- root/root 520 2021-11-09 12:11 ./usr/lib/R/library/datasets/Meta/package.rds -rw-r--r-- root/root 71 2021-11-09 12:11 ./usr/lib/R/library/datasets/NAMESPACE drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/datasets/data/ -rw-r--r-- root/root 115059 2021-11-09 12:11 ./usr/lib/R/library/datasets/data/Rdata.rdb -rw-r--r-- root/root 1085 2021-11-09 12:11 ./usr/lib/R/library/datasets/data/Rdata.rds -rw-r--r-- root/root 1555 2021-11-09 12:11 ./usr/lib/R/library/datasets/data/Rdata.rdx -rw-r--r-- root/root 2122 2021-11-09 12:11 ./usr/lib/R/library/datasets/data/morley.tab drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/datasets/help/ -rw-r--r-- root/root 2036 2021-11-09 12:11 ./usr/lib/R/library/datasets/help/AnIndex -rw-r--r-- root/root 923 2021-11-09 12:11 ./usr/lib/R/library/datasets/help/aliases.rds -rw-r--r-- root/root 207447 2021-11-09 12:11 ./usr/lib/R/library/datasets/help/datasets.rdb -rw-r--r-- root/root 2053 2021-11-09 12:11 ./usr/lib/R/library/datasets/help/datasets.rdx -rw-r--r-- root/root 863 2021-11-09 12:11 ./usr/lib/R/library/datasets/help/paths.rds drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/datasets/html/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/grDevices/ -rw-r--r-- root/root 486 2021-11-09 12:11 ./usr/lib/R/library/grDevices/DESCRIPTION -rw-r--r-- root/root 4275 2021-11-09 12:11 ./usr/lib/R/library/grDevices/INDEX drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/grDevices/Meta/ -rw-r--r-- root/root 3294 2021-11-09 12:11 ./usr/lib/R/library/grDevices/Meta/Rd.rds -rw-r--r-- root/root 152 2021-11-09 12:11 ./usr/lib/R/library/grDevices/Meta/demo.rds -rw-r--r-- root/root 123 2021-11-09 12:11 ./usr/lib/R/library/grDevices/Meta/features.rds -rw-r--r-- root/root 3256 2021-11-09 12:11 ./usr/lib/R/library/grDevices/Meta/hsearch.rds -rw-r--r-- root/root 1689 2021-11-09 12:11 ./usr/lib/R/library/grDevices/Meta/links.rds -rw-r--r-- root/root 1226 2021-11-09 12:11 ./usr/lib/R/library/grDevices/Meta/nsInfo.rds -rw-r--r-- root/root 627 2021-11-09 12:11 ./usr/lib/R/library/grDevices/Meta/package.rds -rw-r--r-- root/root 2737 2021-11-09 12:11 ./usr/lib/R/library/grDevices/NAMESPACE drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/grDevices/R/ -rw-r--r-- root/root 1058 2021-11-09 12:11 ./usr/lib/R/library/grDevices/R/grDevices -rw-r--r-- root/root 235194 2021-11-09 12:11 ./usr/lib/R/library/grDevices/R/grDevices.rdb -rw-r--r-- root/root 2955 2021-11-09 12:11 ./usr/lib/R/library/grDevices/R/grDevices.rdx drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/ -rw-r--r-- root/root 8341 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/ArialMT-Bold.afm.gz -rw-r--r-- root/root 8291 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/ArialMT-BoldItalic.afm.gz -rw-r--r-- root/root 8343 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/ArialMT-Italic.afm.gz -rw-r--r-- root/root 8556 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/ArialMT.afm.gz -rw-r--r-- root/root 3037 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/CM_boldx_10.afm.gz -rw-r--r-- root/root 3126 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/CM_boldx_italic_10.afm.gz -rw-r--r-- root/root 3031 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/CM_italic_10.afm.gz -rw-r--r-- root/root 2935 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/CM_regular_10.afm.gz -rw-r--r-- root/root 2237 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/CM_symbol_10.afm.gz -rw-r--r-- root/root 3967 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/Courier-Bold.afm.gz -rw-r--r-- root/root 4088 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/Courier-BoldOblique.afm.gz -rw-r--r-- root/root 4082 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/Courier-Oblique.afm.gz -rw-r--r-- root/root 3961 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/Courier.afm.gz -rw-r--r-- root/root 12984 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/Helvetica-Bold.afm.gz -rw-r--r-- root/root 13187 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/Helvetica-BoldOblique.afm.gz -rw-r--r-- root/root 13803 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/Helvetica-Oblique.afm.gz -rw-r--r-- root/root 13624 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/Helvetica.afm.gz -rw-r--r-- root/root 1001 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/MustRead.html -rw-r--r-- root/root 889 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/README -rw-r--r-- root/root 3432 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/Symbol.afm.gz -rw-r--r-- root/root 12314 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/Times-Bold.afm.gz -rw-r--r-- root/root 11690 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/Times-BoldItalic.afm.gz -rw-r--r-- root/root 12641 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/Times-Italic.afm.gz -rw-r--r-- root/root 11829 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/Times-Roman.afm.gz -rw-r--r-- root/root 2527 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/ZapfDingbats.afm.gz -rw-r--r-- root/root 10212 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/a010013l.afm.gz -rw-r--r-- root/root 10035 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/a010015l.afm.gz -rw-r--r-- root/root 10260 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/a010033l.afm.gz -rw-r--r-- root/root 10177 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/a010035l.afm.gz -rw-r--r-- root/root 4890 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/agd_____.afm.gz -rw-r--r-- root/root 4965 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/agdo____.afm.gz -rw-r--r-- root/root 5046 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/agw_____.afm.gz -rw-r--r-- root/root 5126 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/agwo____.afm.gz -rw-r--r-- root/root 10240 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/b018012l.afm.gz -rw-r--r-- root/root 10074 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/b018015l.afm.gz -rw-r--r-- root/root 10348 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/b018032l.afm.gz -rw-r--r-- root/root 10346 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/b018035l.afm.gz -rw-r--r-- root/root 4241 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/bkd_____.afm.gz -rw-r--r-- root/root 4356 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/bkdi____.afm.gz -rw-r--r-- root/root 4244 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/bkl_____.afm.gz -rw-r--r-- root/root 4318 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/bkli____.afm.gz -rw-r--r-- root/root 10330 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/c059013l.afm.gz -rw-r--r-- root/root 10234 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/c059016l.afm.gz -rw-r--r-- root/root 10527 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/c059033l.afm.gz -rw-r--r-- root/root 10461 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/c059036l.afm.gz -rw-r--r-- root/root 2924 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/cmbxti10.afm.gz -rw-r--r-- root/root 2904 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/cmti10.afm.gz -rw-r--r-- root/root 3960 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/cob_____.afm.gz -rw-r--r-- root/root 4071 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/cobo____.afm.gz -rw-r--r-- root/root 3959 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/com_____.afm.gz -rw-r--r-- root/root 4079 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/coo_____.afm.gz -rw-r--r-- root/root 4813 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/hv______.afm.gz -rw-r--r-- root/root 4678 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/hvb_____.afm.gz -rw-r--r-- root/root 4820 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/hvbo____.afm.gz -rw-r--r-- root/root 4797 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/hvn_____.afm.gz -rw-r--r-- root/root 4662 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/hvnb____.afm.gz -rw-r--r-- root/root 4813 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/hvnbo___.afm.gz -rw-r--r-- root/root 4950 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/hvno____.afm.gz -rw-r--r-- root/root 4964 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/hvo_____.afm.gz -rw-r--r-- root/root 10204 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/n019003l.afm.gz -rw-r--r-- root/root 10032 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/n019004l.afm.gz -rw-r--r-- root/root 10471 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/n019023l.afm.gz -rw-r--r-- root/root 10310 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/n019024l.afm.gz -rw-r--r-- root/root 10082 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/n019043l.afm.gz -rw-r--r-- root/root 9772 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/n019044l.afm.gz -rw-r--r-- root/root 10271 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/n019063l.afm.gz -rw-r--r-- root/root 10153 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/n019064l.afm.gz -rw-r--r-- root/root 10526 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/n021003l.afm.gz -rw-r--r-- root/root 10342 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/n021004l.afm.gz -rw-r--r-- root/root 10532 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/n021023l.afm.gz -rw-r--r-- root/root 10512 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/n021024l.afm.gz -rw-r--r-- root/root 5464 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/n022003l.afm.gz -rw-r--r-- root/root 5561 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/n022004l.afm.gz -rw-r--r-- root/root 5859 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/n022023l.afm.gz -rw-r--r-- root/root 5841 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/n022024l.afm.gz -rw-r--r-- root/root 4268 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/ncb_____.afm.gz -rw-r--r-- root/root 4908 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/ncbi____.afm.gz -rw-r--r-- root/root 4506 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/nci_____.afm.gz -rw-r--r-- root/root 4440 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/ncr_____.afm.gz -rw-r--r-- root/root 10408 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/p052003l.afm.gz -rw-r--r-- root/root 10217 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/p052004l.afm.gz -rw-r--r-- root/root 10511 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/p052023l.afm.gz -rw-r--r-- root/root 10268 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/p052024l.afm.gz -rw-r--r-- root/root 4382 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/pob_____.afm.gz -rw-r--r-- root/root 4419 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/pobi____.afm.gz -rw-r--r-- root/root 4441 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/poi_____.afm.gz -rw-r--r-- root/root 4473 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/por_____.afm.gz -rw-r--r-- root/root 3370 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/s050000l.afm.gz -rw-r--r-- root/root 3385 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/sy______.afm.gz -rw-r--r-- root/root 4992 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/tib_____.afm.gz -rw-r--r-- root/root 5089 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/tibi____.afm.gz -rw-r--r-- root/root 5094 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/tii_____.afm.gz -rw-r--r-- root/root 4970 2021-11-09 12:11 ./usr/lib/R/library/grDevices/afm/tir_____.afm.gz drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/grDevices/demo/ -rw-r--r-- root/root 3766 2021-11-09 12:11 ./usr/lib/R/library/grDevices/demo/colors.R -rw-r--r-- root/root 2610 2021-11-09 12:11 ./usr/lib/R/library/grDevices/demo/hclColors.R drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/grDevices/enc/ -rw-r--r-- root/root 2094 2021-11-09 12:11 ./usr/lib/R/library/grDevices/enc/AdobeStd.enc -rw-r--r-- root/root 2514 2021-11-09 12:11 ./usr/lib/R/library/grDevices/enc/AdobeSym.enc -rw-r--r-- root/root 2224 2021-11-09 12:11 ./usr/lib/R/library/grDevices/enc/CP1250.enc -rw-r--r-- root/root 2389 2021-11-09 12:11 ./usr/lib/R/library/grDevices/enc/CP1251.enc -rw-r--r-- root/root 2185 2021-11-09 12:11 ./usr/lib/R/library/grDevices/enc/CP1253.enc -rw-r--r-- root/root 2247 2021-11-09 12:11 ./usr/lib/R/library/grDevices/enc/CP1257.enc -rw-r--r-- root/root 2349 2021-11-09 12:11 ./usr/lib/R/library/grDevices/enc/Cyrillic.enc -rw-r--r-- root/root 2212 2021-11-09 12:11 ./usr/lib/R/library/grDevices/enc/Greek.enc -rw-r--r-- root/root 2213 2021-11-09 12:11 ./usr/lib/R/library/grDevices/enc/ISOLatin1.enc -rw-r--r-- root/root 2187 2021-11-09 12:11 ./usr/lib/R/library/grDevices/enc/ISOLatin2.enc -rw-r--r-- root/root 2272 2021-11-09 12:11 ./usr/lib/R/library/grDevices/enc/ISOLatin7.enc -rw-r--r-- root/root 2196 2021-11-09 12:11 ./usr/lib/R/library/grDevices/enc/ISOLatin9.enc -rw-r--r-- root/root 2290 2021-11-09 12:11 ./usr/lib/R/library/grDevices/enc/KOI8-R.enc -rw-r--r-- root/root 2308 2021-11-09 12:11 ./usr/lib/R/library/grDevices/enc/KOI8-U.enc -rw-r--r-- root/root 2262 2021-11-09 12:11 ./usr/lib/R/library/grDevices/enc/MacRoman.enc -rw-r--r-- root/root 2207 2021-11-09 12:11 ./usr/lib/R/library/grDevices/enc/PDFDoc.enc -rw-r--r-- root/root 2091 2021-11-09 12:11 ./usr/lib/R/library/grDevices/enc/TeXtext.enc -rw-r--r-- root/root 2311 2021-11-09 12:11 ./usr/lib/R/library/grDevices/enc/WinAnsi.enc drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/grDevices/help/ -rw-r--r-- root/root 3262 2021-11-09 12:11 ./usr/lib/R/library/grDevices/help/AnIndex -rw-r--r-- root/root 1402 2021-11-09 12:11 ./usr/lib/R/library/grDevices/help/aliases.rds -rw-r--r-- root/root 386510 2021-11-09 12:11 ./usr/lib/R/library/grDevices/help/grDevices.rdb -rw-r--r-- root/root 1712 2021-11-09 12:11 ./usr/lib/R/library/grDevices/help/grDevices.rdx -rw-r--r-- root/root 724 2021-11-09 12:11 ./usr/lib/R/library/grDevices/help/paths.rds drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/grDevices/html/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/grDevices/icc/ -rw-r--r-- root/root 9521 2021-11-09 12:11 ./usr/lib/R/library/grDevices/icc/srgb -rw-r--r-- root/root 2680 2021-11-09 12:11 ./usr/lib/R/library/grDevices/icc/srgb.flate drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/grDevices/libs/ -rw-r--r-- root/root 44280 2021-11-09 12:11 ./usr/lib/R/library/grDevices/libs/cairo.so -rw-r--r-- root/root 220472 2021-11-09 12:11 ./usr/lib/R/library/grDevices/libs/grDevices.so drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/graphics/ -rw-r--r-- root/root 423 2021-11-09 12:11 ./usr/lib/R/library/graphics/DESCRIPTION -rw-r--r-- root/root 3728 2021-11-09 12:11 ./usr/lib/R/library/graphics/INDEX drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/graphics/Meta/ -rw-r--r-- root/root 3198 2021-11-09 12:11 ./usr/lib/R/library/graphics/Meta/Rd.rds -rw-r--r-- root/root 284 2021-11-09 12:11 ./usr/lib/R/library/graphics/Meta/demo.rds -rw-r--r-- root/root 123 2021-11-09 12:11 ./usr/lib/R/library/graphics/Meta/features.rds -rw-r--r-- root/root 3164 2021-11-09 12:11 ./usr/lib/R/library/graphics/Meta/hsearch.rds -rw-r--r-- root/root 1351 2021-11-09 12:11 ./usr/lib/R/library/graphics/Meta/links.rds -rw-r--r-- root/root 1183 2021-11-09 12:11 ./usr/lib/R/library/graphics/Meta/nsInfo.rds -rw-r--r-- root/root 603 2021-11-09 12:11 ./usr/lib/R/library/graphics/Meta/package.rds -rw-r--r-- root/root 2812 2021-11-09 12:11 ./usr/lib/R/library/graphics/NAMESPACE drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/graphics/R/ -rw-r--r-- root/root 1058 2021-11-09 12:11 ./usr/lib/R/library/graphics/R/graphics -rw-r--r-- root/root 325827 2021-11-09 12:11 ./usr/lib/R/library/graphics/R/graphics.rdb -rw-r--r-- root/root 1864 2021-11-09 12:11 ./usr/lib/R/library/graphics/R/graphics.rdx drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/graphics/demo/ -rw-r--r-- root/root 19972 2021-11-09 12:11 ./usr/lib/R/library/graphics/demo/Hershey.R -rw-r--r-- root/root 34519 2021-11-09 12:11 ./usr/lib/R/library/graphics/demo/Japanese.R -rw-r--r-- root/root 5039 2021-11-09 12:11 ./usr/lib/R/library/graphics/demo/graphics.R -rw-r--r-- root/root 1105 2021-11-09 12:11 ./usr/lib/R/library/graphics/demo/image.R -rw-r--r-- root/root 2791 2021-11-09 12:11 ./usr/lib/R/library/graphics/demo/persp.R -rw-r--r-- root/root 8759 2021-11-09 12:11 ./usr/lib/R/library/graphics/demo/plotmath.R drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/graphics/help/ -rw-r--r-- root/root 2565 2021-11-09 12:11 ./usr/lib/R/library/graphics/help/AnIndex -rw-r--r-- root/root 1025 2021-11-09 12:11 ./usr/lib/R/library/graphics/help/aliases.rds drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/graphics/help/figures/ -rw-r--r-- root/root 2541 2021-11-09 12:11 ./usr/lib/R/library/graphics/help/figures/mai.pdf -rw-r--r-- root/root 4667 2021-11-09 12:11 ./usr/lib/R/library/graphics/help/figures/mai.png -rw-r--r-- root/root 3763 2021-11-09 12:11 ./usr/lib/R/library/graphics/help/figures/oma.pdf -rw-r--r-- root/root 5114 2021-11-09 12:11 ./usr/lib/R/library/graphics/help/figures/oma.png -rw-r--r-- root/root 4994 2021-11-09 12:11 ./usr/lib/R/library/graphics/help/figures/pch.pdf -rw-r--r-- root/root 5475 2021-11-09 12:11 ./usr/lib/R/library/graphics/help/figures/pch.png -rw-r--r-- root/root 27187 2021-11-09 12:11 ./usr/lib/R/library/graphics/help/figures/pch.svg -rw-r--r-- root/root 472286 2021-11-09 12:11 ./usr/lib/R/library/graphics/help/graphics.rdb -rw-r--r-- root/root 1661 2021-11-09 12:11 ./usr/lib/R/library/graphics/help/graphics.rdx -rw-r--r-- root/root 648 2021-11-09 12:11 ./usr/lib/R/library/graphics/help/paths.rds drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/graphics/html/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/graphics/libs/ -rw-r--r-- root/root 211808 2021-11-09 12:11 ./usr/lib/R/library/graphics/libs/graphics.so drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/grid/ -rw-r--r-- root/root 483 2021-11-09 12:11 ./usr/lib/R/library/grid/DESCRIPTION -rw-r--r-- root/root 5248 2021-11-09 12:11 ./usr/lib/R/library/grid/INDEX drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/grid/Meta/ -rw-r--r-- root/root 3737 2021-11-09 12:11 ./usr/lib/R/library/grid/Meta/Rd.rds -rw-r--r-- root/root 123 2021-11-09 12:11 ./usr/lib/R/library/grid/Meta/features.rds -rw-r--r-- root/root 3692 2021-11-09 12:11 ./usr/lib/R/library/grid/Meta/hsearch.rds -rw-r--r-- root/root 2074 2021-11-09 12:11 ./usr/lib/R/library/grid/Meta/links.rds -rw-r--r-- root/root 2324 2021-11-09 12:11 ./usr/lib/R/library/grid/Meta/nsInfo.rds -rw-r--r-- root/root 667 2021-11-09 12:11 ./usr/lib/R/library/grid/Meta/package.rds -rw-r--r-- root/root 14083 2021-11-09 12:11 ./usr/lib/R/library/grid/NAMESPACE drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/grid/R/ -rw-r--r-- root/root 1058 2021-11-09 12:11 ./usr/lib/R/library/grid/R/grid -rw-r--r-- root/root 510499 2021-11-09 12:11 ./usr/lib/R/library/grid/R/grid.rdb -rw-r--r-- root/root 9405 2021-11-09 12:11 ./usr/lib/R/library/grid/R/grid.rdx drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/grid/doc/ -rw-r--r-- root/root 2211 2021-11-09 12:11 ./usr/lib/R/library/grid/doc/DivByZero.txt -rw-r--r-- root/root 59617 2021-11-09 12:11 ./usr/lib/R/library/grid/doc/changes.txt -rw-r--r-- root/root 157971 2021-11-09 12:11 ./usr/lib/R/library/grid/doc/displaylist.pdf -rw-r--r-- root/root 156575 2021-11-09 12:11 ./usr/lib/R/library/grid/doc/frame.pdf -rw-r--r-- root/root 233158 2021-11-09 12:11 ./usr/lib/R/library/grid/doc/grid.pdf -rw-r--r-- root/root 107242 2021-11-09 12:11 ./usr/lib/R/library/grid/doc/grobs.pdf -rw-r--r-- root/root 90959 2021-11-09 12:11 ./usr/lib/R/library/grid/doc/interactive.pdf -rw-r--r-- root/root 88795 2021-11-09 12:11 ./usr/lib/R/library/grid/doc/locndimn.pdf -rw-r--r-- root/root 87412 2021-11-09 12:11 ./usr/lib/R/library/grid/doc/moveline.pdf -rw-r--r-- root/root 80020 2021-11-09 12:11 ./usr/lib/R/library/grid/doc/nonfinite.pdf -rw-r--r-- root/root 236321 2021-11-09 12:11 ./usr/lib/R/library/grid/doc/plotexample.pdf -rw-r--r-- root/root 129088 2021-11-09 12:11 ./usr/lib/R/library/grid/doc/rotated.pdf -rw-r--r-- root/root 133968 2021-11-09 12:11 ./usr/lib/R/library/grid/doc/saveload.pdf -rw-r--r-- root/root 72820 2021-11-09 12:11 ./usr/lib/R/library/grid/doc/sharing.pdf -rw-r--r-- root/root 164060 2021-11-09 12:11 ./usr/lib/R/library/grid/doc/viewports.pdf drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/grid/help/ -rw-r--r-- root/root 5211 2021-11-09 12:11 ./usr/lib/R/library/grid/help/AnIndex -rw-r--r-- root/root 1754 2021-11-09 12:11 ./usr/lib/R/library/grid/help/aliases.rds -rw-r--r-- root/root 284302 2021-11-09 12:11 ./usr/lib/R/library/grid/help/grid.rdb -rw-r--r-- root/root 2085 2021-11-09 12:11 ./usr/lib/R/library/grid/help/grid.rdx -rw-r--r-- root/root 819 2021-11-09 12:11 ./usr/lib/R/library/grid/help/paths.rds drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/grid/html/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/grid/libs/ -rw-r--r-- root/root 97016 2021-11-09 12:11 ./usr/lib/R/library/grid/libs/grid.so drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/methods/ -rw-r--r-- root/root 615 2021-11-09 12:11 ./usr/lib/R/library/methods/DESCRIPTION -rw-r--r-- root/root 5203 2021-11-09 12:11 ./usr/lib/R/library/methods/INDEX drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/methods/Meta/ -rw-r--r-- root/root 5789 2021-11-09 12:11 ./usr/lib/R/library/methods/Meta/Rd.rds -rw-r--r-- root/root 123 2021-11-09 12:11 ./usr/lib/R/library/methods/Meta/features.rds -rw-r--r-- root/root 5850 2021-11-09 12:11 ./usr/lib/R/library/methods/Meta/hsearch.rds -rw-r--r-- root/root 4067 2021-11-09 12:11 ./usr/lib/R/library/methods/Meta/links.rds -rw-r--r-- root/root 1716 2021-11-09 12:11 ./usr/lib/R/library/methods/Meta/nsInfo.rds -rw-r--r-- root/root 745 2021-11-09 12:11 ./usr/lib/R/library/methods/Meta/package.rds -rw-r--r-- root/root 5254 2021-11-09 12:11 ./usr/lib/R/library/methods/NAMESPACE drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/methods/R/ -rw-r--r-- root/root 1058 2021-11-09 12:11 ./usr/lib/R/library/methods/R/methods -rw-r--r-- root/root 1316391 2021-11-09 12:11 ./usr/lib/R/library/methods/R/methods.rdb -rw-r--r-- root/root 14402 2021-11-09 12:11 ./usr/lib/R/library/methods/R/methods.rdx drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/methods/help/ -rw-r--r-- root/root 14357 2021-11-09 12:11 ./usr/lib/R/library/methods/help/AnIndex -rw-r--r-- root/root 4115 2021-11-09 12:11 ./usr/lib/R/library/methods/help/aliases.rds -rw-r--r-- root/root 515458 2021-11-09 12:11 ./usr/lib/R/library/methods/help/methods.rdb -rw-r--r-- root/root 2047 2021-11-09 12:11 ./usr/lib/R/library/methods/help/methods.rdx -rw-r--r-- root/root 890 2021-11-09 12:11 ./usr/lib/R/library/methods/help/paths.rds drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/methods/html/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/methods/libs/ -rw-r--r-- root/root 31160 2021-11-09 12:11 ./usr/lib/R/library/methods/libs/methods.so drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/parallel/ -rw-r--r-- root/root 590 2021-11-09 12:11 ./usr/lib/R/library/parallel/DESCRIPTION -rw-r--r-- root/root 914 2021-11-09 12:11 ./usr/lib/R/library/parallel/INDEX drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/parallel/Meta/ -rw-r--r-- root/root 986 2021-11-09 12:11 ./usr/lib/R/library/parallel/Meta/Rd.rds -rw-r--r-- root/root 123 2021-11-09 12:11 ./usr/lib/R/library/parallel/Meta/features.rds -rw-r--r-- root/root 1023 2021-11-09 12:11 ./usr/lib/R/library/parallel/Meta/hsearch.rds -rw-r--r-- root/root 522 2021-11-09 12:11 ./usr/lib/R/library/parallel/Meta/links.rds -rw-r--r-- root/root 652 2021-11-09 12:11 ./usr/lib/R/library/parallel/Meta/nsInfo.rds -rw-r--r-- root/root 709 2021-11-09 12:11 ./usr/lib/R/library/parallel/Meta/package.rds -rw-r--r-- root/root 1371 2021-11-09 12:11 ./usr/lib/R/library/parallel/NAMESPACE drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/parallel/R/ -rw-r--r-- root/root 1058 2021-11-09 12:11 ./usr/lib/R/library/parallel/R/parallel -rw-r--r-- root/root 104926 2021-11-09 12:11 ./usr/lib/R/library/parallel/R/parallel.rdb -rw-r--r-- root/root 1838 2021-11-09 12:11 ./usr/lib/R/library/parallel/R/parallel.rdx drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/parallel/doc/ -rw-r--r-- root/root 295675 2021-11-09 12:11 ./usr/lib/R/library/parallel/doc/parallel.pdf drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/parallel/help/ -rw-r--r-- root/root 1053 2021-11-09 12:11 ./usr/lib/R/library/parallel/help/AnIndex -rw-r--r-- root/root 468 2021-11-09 12:11 ./usr/lib/R/library/parallel/help/aliases.rds -rw-r--r-- root/root 76860 2021-11-09 12:11 ./usr/lib/R/library/parallel/help/parallel.rdb -rw-r--r-- root/root 454 2021-11-09 12:11 ./usr/lib/R/library/parallel/help/parallel.rdx -rw-r--r-- root/root 266 2021-11-09 12:11 ./usr/lib/R/library/parallel/help/paths.rds drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/parallel/html/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/parallel/libs/ -rw-r--r-- root/root 22752 2021-11-09 12:11 ./usr/lib/R/library/parallel/libs/parallel.so drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/splines/ -rw-r--r-- root/root 531 2021-11-09 12:11 ./usr/lib/R/library/splines/DESCRIPTION -rw-r--r-- root/root 832 2021-11-09 12:11 ./usr/lib/R/library/splines/INDEX drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/splines/Meta/ -rw-r--r-- root/root 745 2021-11-09 12:11 ./usr/lib/R/library/splines/Meta/Rd.rds -rw-r--r-- root/root 123 2021-11-09 12:11 ./usr/lib/R/library/splines/Meta/features.rds -rw-r--r-- root/root 743 2021-11-09 12:11 ./usr/lib/R/library/splines/Meta/hsearch.rds -rw-r--r-- root/root 345 2021-11-09 12:11 ./usr/lib/R/library/splines/Meta/links.rds -rw-r--r-- root/root 601 2021-11-09 12:11 ./usr/lib/R/library/splines/Meta/nsInfo.rds -rw-r--r-- root/root 698 2021-11-09 12:11 ./usr/lib/R/library/splines/Meta/package.rds -rw-r--r-- root/root 1425 2021-11-09 12:11 ./usr/lib/R/library/splines/NAMESPACE drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/splines/R/ -rw-r--r-- root/root 1058 2021-11-09 12:11 ./usr/lib/R/library/splines/R/splines -rw-r--r-- root/root 53276 2021-11-09 12:11 ./usr/lib/R/library/splines/R/splines.rdb -rw-r--r-- root/root 833 2021-11-09 12:11 ./usr/lib/R/library/splines/R/splines.rdx drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/splines/help/ -rw-r--r-- root/root 541 2021-11-09 12:11 ./usr/lib/R/library/splines/help/AnIndex -rw-r--r-- root/root 251 2021-11-09 12:11 ./usr/lib/R/library/splines/help/aliases.rds -rw-r--r-- root/root 258 2021-11-09 12:11 ./usr/lib/R/library/splines/help/paths.rds -rw-r--r-- root/root 39766 2021-11-09 12:11 ./usr/lib/R/library/splines/help/splines.rdb -rw-r--r-- root/root 466 2021-11-09 12:11 ./usr/lib/R/library/splines/help/splines.rdx drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/splines/html/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/splines/libs/ -rw-r--r-- root/root 10080 2021-11-09 12:11 ./usr/lib/R/library/splines/libs/splines.so drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/stats/ -rw-r--r-- root/root 1552 2021-11-09 12:11 ./usr/lib/R/library/stats/COPYRIGHTS.modreg -rw-r--r-- root/root 479 2021-11-09 12:11 ./usr/lib/R/library/stats/DESCRIPTION -rw-r--r-- root/root 18844 2021-11-09 12:11 ./usr/lib/R/library/stats/INDEX drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/stats/Meta/ -rw-r--r-- root/root 12979 2021-11-09 12:11 ./usr/lib/R/library/stats/Meta/Rd.rds -rw-r--r-- root/root 286 2021-11-09 12:11 ./usr/lib/R/library/stats/Meta/demo.rds -rw-r--r-- root/root 123 2021-11-09 12:11 ./usr/lib/R/library/stats/Meta/features.rds -rw-r--r-- root/root 13039 2021-11-09 12:11 ./usr/lib/R/library/stats/Meta/hsearch.rds -rw-r--r-- root/root 6494 2021-11-09 12:11 ./usr/lib/R/library/stats/Meta/links.rds -rw-r--r-- root/root 4429 2021-11-09 12:11 ./usr/lib/R/library/stats/Meta/nsInfo.rds -rw-r--r-- root/root 706 2021-11-09 12:11 ./usr/lib/R/library/stats/Meta/package.rds -rw-r--r-- root/root 16794 2021-11-09 12:11 ./usr/lib/R/library/stats/NAMESPACE drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/stats/R/ -rw-r--r-- root/root 1058 2021-11-09 12:11 ./usr/lib/R/library/stats/R/stats -rw-r--r-- root/root 1636405 2021-11-09 12:11 ./usr/lib/R/library/stats/R/stats.rdb -rw-r--r-- root/root 10982 2021-11-09 12:11 ./usr/lib/R/library/stats/R/stats.rdx -rw-r--r-- root/root 550 2021-11-09 12:11 ./usr/lib/R/library/stats/SOURCES.ts drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/stats/demo/ -rw-r--r-- root/root 744 2021-11-09 12:11 ./usr/lib/R/library/stats/demo/glm.vr.R -rw-r--r-- root/root 4993 2021-11-09 12:11 ./usr/lib/R/library/stats/demo/lm.glm.R -rw-r--r-- root/root 3250 2021-11-09 12:11 ./usr/lib/R/library/stats/demo/nlm.R -rw-r--r-- root/root 1282 2021-11-09 12:11 ./usr/lib/R/library/stats/demo/smooth.R drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/stats/help/ -rw-r--r-- root/root 16083 2021-11-09 12:11 ./usr/lib/R/library/stats/help/AnIndex -rw-r--r-- root/root 5355 2021-11-09 12:11 ./usr/lib/R/library/stats/help/aliases.rds -rw-r--r-- root/root 2393 2021-11-09 12:11 ./usr/lib/R/library/stats/help/paths.rds -rw-r--r-- root/root 1566820 2021-11-09 12:11 ./usr/lib/R/library/stats/help/stats.rdb -rw-r--r-- root/root 6574 2021-11-09 12:11 ./usr/lib/R/library/stats/help/stats.rdx drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/stats/html/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/stats/libs/ -rw-r--r-- root/root 452592 2021-11-09 12:11 ./usr/lib/R/library/stats/libs/stats.so drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/stats4/ -rw-r--r-- root/root 414 2021-11-09 12:11 ./usr/lib/R/library/stats4/DESCRIPTION -rw-r--r-- root/root 1215 2021-11-09 12:11 ./usr/lib/R/library/stats4/INDEX drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/stats4/Meta/ -rw-r--r-- root/root 810 2021-11-09 12:11 ./usr/lib/R/library/stats4/Meta/Rd.rds -rw-r--r-- root/root 123 2021-11-09 12:11 ./usr/lib/R/library/stats4/Meta/features.rds -rw-r--r-- root/root 839 2021-11-09 12:11 ./usr/lib/R/library/stats4/Meta/hsearch.rds -rw-r--r-- root/root 441 2021-11-09 12:11 ./usr/lib/R/library/stats4/Meta/links.rds -rw-r--r-- root/root 432 2021-11-09 12:11 ./usr/lib/R/library/stats4/Meta/nsInfo.rds -rw-r--r-- root/root 598 2021-11-09 12:11 ./usr/lib/R/library/stats4/Meta/package.rds -rw-r--r-- root/root 688 2021-11-09 12:11 ./usr/lib/R/library/stats4/NAMESPACE drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/stats4/R/ -rw-r--r-- root/root 1058 2021-11-09 12:11 ./usr/lib/R/library/stats4/R/stats4 -rw-r--r-- root/root 173394 2021-11-09 12:11 ./usr/lib/R/library/stats4/R/stats4.rdb -rw-r--r-- root/root 1151 2021-11-09 12:11 ./usr/lib/R/library/stats4/R/stats4.rdx drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/stats4/help/ -rw-r--r-- root/root 1120 2021-11-09 12:11 ./usr/lib/R/library/stats4/help/AnIndex -rw-r--r-- root/root 370 2021-11-09 12:11 ./usr/lib/R/library/stats4/help/aliases.rds -rw-r--r-- root/root 262 2021-11-09 12:11 ./usr/lib/R/library/stats4/help/paths.rds -rw-r--r-- root/root 34111 2021-11-09 12:11 ./usr/lib/R/library/stats4/help/stats4.rdb -rw-r--r-- root/root 465 2021-11-09 12:11 ./usr/lib/R/library/stats4/help/stats4.rdx drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/stats4/html/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/tcltk/ -rw-r--r-- root/root 408 2021-11-09 12:11 ./usr/lib/R/library/tcltk/DESCRIPTION -rw-r--r-- root/root 626 2021-11-09 12:11 ./usr/lib/R/library/tcltk/INDEX drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/tcltk/Meta/ -rw-r--r-- root/root 2397 2021-11-09 12:11 ./usr/lib/R/library/tcltk/Meta/Rd.rds -rw-r--r-- root/root 287 2021-11-09 12:11 ./usr/lib/R/library/tcltk/Meta/demo.rds -rw-r--r-- root/root 123 2021-11-09 12:11 ./usr/lib/R/library/tcltk/Meta/features.rds -rw-r--r-- root/root 2460 2021-11-09 12:11 ./usr/lib/R/library/tcltk/Meta/hsearch.rds -rw-r--r-- root/root 2096 2021-11-09 12:11 ./usr/lib/R/library/tcltk/Meta/links.rds -rw-r--r-- root/root 487 2021-11-09 12:11 ./usr/lib/R/library/tcltk/Meta/nsInfo.rds -rw-r--r-- root/root 595 2021-11-09 12:11 ./usr/lib/R/library/tcltk/Meta/package.rds -rw-r--r-- root/root 980 2021-11-09 12:11 ./usr/lib/R/library/tcltk/NAMESPACE drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/tcltk/R/ -rw-r--r-- root/root 1058 2021-11-09 12:11 ./usr/lib/R/library/tcltk/R/tcltk -rw-r--r-- root/root 101799 2021-11-09 12:11 ./usr/lib/R/library/tcltk/R/tcltk.rdb -rw-r--r-- root/root 3503 2021-11-09 12:11 ./usr/lib/R/library/tcltk/R/tcltk.rdx drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/tcltk/demo/ -rw-r--r-- root/root 5228 2021-11-09 12:11 ./usr/lib/R/library/tcltk/demo/tkcanvas.R -rw-r--r-- root/root 3476 2021-11-09 12:11 ./usr/lib/R/library/tcltk/demo/tkdensity.R -rw-r--r-- root/root 1229 2021-11-09 12:11 ./usr/lib/R/library/tcltk/demo/tkfaq.R -rw-r--r-- root/root 2975 2021-11-09 12:11 ./usr/lib/R/library/tcltk/demo/tkttest.R drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/tcltk/exec/ -rw-r--r-- root/root 949 2021-11-09 12:11 ./usr/lib/R/library/tcltk/exec/Tk-frontend.R -rw-r--r-- root/root 2235 2021-11-09 12:11 ./usr/lib/R/library/tcltk/exec/console.tcl -rw-r--r-- root/root 39160 2021-11-09 12:11 ./usr/lib/R/library/tcltk/exec/hierarchy.tcl -rw-r--r-- root/root 1343 2021-11-09 12:11 ./usr/lib/R/library/tcltk/exec/pkgIndex.tcl -rw-r--r-- root/root 78634 2021-11-09 12:11 ./usr/lib/R/library/tcltk/exec/progressbar.tcl -rw-r--r-- root/root 17830 2021-11-09 12:11 ./usr/lib/R/library/tcltk/exec/util-dump.tcl -rw-r--r-- root/root 5753 2021-11-09 12:11 ./usr/lib/R/library/tcltk/exec/util-expand.tcl -rw-r--r-- root/root 2115 2021-11-09 12:11 ./usr/lib/R/library/tcltk/exec/util-number.tcl -rw-r--r-- root/root 3600 2021-11-09 12:11 ./usr/lib/R/library/tcltk/exec/util-string.tcl -rw-r--r-- root/root 7157 2021-11-09 12:11 ./usr/lib/R/library/tcltk/exec/util-tk.tcl -rw-r--r-- root/root 23267 2021-11-09 12:11 ./usr/lib/R/library/tcltk/exec/util.tcl -rw-r--r-- root/root 32703 2021-11-09 12:11 ./usr/lib/R/library/tcltk/exec/widget.tcl drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/tcltk/help/ -rw-r--r-- root/root 7436 2021-11-09 12:11 ./usr/lib/R/library/tcltk/help/AnIndex -rw-r--r-- root/root 2095 2021-11-09 12:11 ./usr/lib/R/library/tcltk/help/aliases.rds -rw-r--r-- root/root 287 2021-11-09 12:11 ./usr/lib/R/library/tcltk/help/paths.rds -rw-r--r-- root/root 51191 2021-11-09 12:11 ./usr/lib/R/library/tcltk/help/tcltk.rdb -rw-r--r-- root/root 500 2021-11-09 12:11 ./usr/lib/R/library/tcltk/help/tcltk.rdx drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/tcltk/html/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/tcltk/libs/ -rw-r--r-- root/root 27224 2021-11-09 12:11 ./usr/lib/R/library/tcltk/libs/tcltk.so drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/tools/ -rw-r--r-- root/root 468 2021-11-09 12:11 ./usr/lib/R/library/tools/DESCRIPTION -rw-r--r-- root/root 3835 2021-11-09 12:11 ./usr/lib/R/library/tools/INDEX drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/tools/Meta/ -rw-r--r-- root/root 3320 2021-11-09 12:11 ./usr/lib/R/library/tools/Meta/Rd.rds -rw-r--r-- root/root 123 2021-11-09 12:11 ./usr/lib/R/library/tools/Meta/features.rds -rw-r--r-- root/root 3274 2021-11-09 12:11 ./usr/lib/R/library/tools/Meta/hsearch.rds -rw-r--r-- root/root 1774 2021-11-09 12:11 ./usr/lib/R/library/tools/Meta/links.rds -rw-r--r-- root/root 1850 2021-11-09 12:11 ./usr/lib/R/library/tools/Meta/nsInfo.rds -rw-r--r-- root/root 659 2021-11-09 12:11 ./usr/lib/R/library/tools/Meta/package.rds -rw-r--r-- root/root 7931 2021-11-09 12:11 ./usr/lib/R/library/tools/NAMESPACE drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/tools/R/ -rw-r--r-- root/root 8563 2021-11-09 12:11 ./usr/lib/R/library/tools/R/sysdata.rdb -rw-r--r-- root/root 214 2021-11-09 12:11 ./usr/lib/R/library/tools/R/sysdata.rdx -rw-r--r-- root/root 1058 2021-11-09 12:11 ./usr/lib/R/library/tools/R/tools -rw-r--r-- root/root 1925841 2021-11-09 12:11 ./usr/lib/R/library/tools/R/tools.rdb -rw-r--r-- root/root 11035 2021-11-09 12:11 ./usr/lib/R/library/tools/R/tools.rdx drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/tools/help/ -rw-r--r-- root/root 3851 2021-11-09 12:11 ./usr/lib/R/library/tools/help/AnIndex -rw-r--r-- root/root 1543 2021-11-09 12:11 ./usr/lib/R/library/tools/help/aliases.rds -rw-r--r-- root/root 779 2021-11-09 12:11 ./usr/lib/R/library/tools/help/paths.rds -rw-r--r-- root/root 245453 2021-11-09 12:11 ./usr/lib/R/library/tools/help/tools.rdb -rw-r--r-- root/root 1692 2021-11-09 12:11 ./usr/lib/R/library/tools/help/tools.rdx drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/tools/html/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/tools/libs/ -rw-r--r-- root/root 80632 2021-11-09 12:11 ./usr/lib/R/library/tools/libs/tools.so drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/translations/ -rw-r--r-- root/root 238 2021-11-09 12:11 ./usr/lib/R/library/translations/DESCRIPTION drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/translations/da/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/translations/da/LC_MESSAGES/ -rw-r--r-- root/root 50186 2021-11-09 12:11 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-base.mo -rw-r--r-- root/root 3052 2021-11-09 12:11 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-compiler.mo -rw-r--r-- root/root 10049 2021-11-09 12:11 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-grDevices.mo -rw-r--r-- root/root 1211 2021-11-09 12:11 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-graphics.mo -rw-r--r-- root/root 1211 2021-11-09 12:11 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-grid.mo -rw-r--r-- root/root 1299 2021-11-09 12:11 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-methods.mo -rw-r--r-- root/root 2514 2021-11-09 12:11 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-parallel.mo -rw-r--r-- root/root 1963 2021-11-09 12:11 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-splines.mo -rw-r--r-- root/root 4444 2021-11-09 12:11 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-stats.mo -rw-r--r-- root/root 768 2021-11-09 12:11 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-stats4.mo -rw-r--r-- root/root 2132 2021-11-09 12:11 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-tcltk.mo -rw-r--r-- root/root 5869 2021-11-09 12:11 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-tools.mo -rw-r--r-- root/root 4818 2021-11-09 12:11 ./usr/lib/R/library/translations/da/LC_MESSAGES/R-utils.mo -rw-r--r-- root/root 47534 2021-11-09 12:11 ./usr/lib/R/library/translations/da/LC_MESSAGES/R.mo -rw-r--r-- root/root 19993 2021-11-09 12:11 ./usr/lib/R/library/translations/da/LC_MESSAGES/RGui.mo -rw-r--r-- root/root 9145 2021-11-09 12:11 ./usr/lib/R/library/translations/da/LC_MESSAGES/grDevices.mo -rw-r--r-- root/root 542 2021-11-09 12:11 ./usr/lib/R/library/translations/da/LC_MESSAGES/graphics.mo -rw-r--r-- root/root 802 2021-11-09 12:11 ./usr/lib/R/library/translations/da/LC_MESSAGES/grid.mo -rw-r--r-- root/root 4240 2021-11-09 12:11 ./usr/lib/R/library/translations/da/LC_MESSAGES/methods.mo -rw-r--r-- root/root 1443 2021-11-09 12:11 ./usr/lib/R/library/translations/da/LC_MESSAGES/parallel.mo -rw-r--r-- root/root 511 2021-11-09 12:11 ./usr/lib/R/library/translations/da/LC_MESSAGES/splines.mo -rw-r--r-- root/root 6139 2021-11-09 12:11 ./usr/lib/R/library/translations/da/LC_MESSAGES/stats.mo -rw-r--r-- root/root 1231 2021-11-09 12:11 ./usr/lib/R/library/translations/da/LC_MESSAGES/tcltk.mo -rw-r--r-- root/root 928 2021-11-09 12:11 ./usr/lib/R/library/translations/da/LC_MESSAGES/tools.mo drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/translations/de/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/translations/de/LC_MESSAGES/ -rw-r--r-- root/root 57663 2021-11-09 12:11 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-base.mo -rw-r--r-- root/root 4162 2021-11-09 12:11 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-compiler.mo -rw-r--r-- root/root 13716 2021-11-09 12:11 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-grDevices.mo -rw-r--r-- root/root 15982 2021-11-09 12:11 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-graphics.mo -rw-r--r-- root/root 15292 2021-11-09 12:11 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-grid.mo -rw-r--r-- root/root 67931 2021-11-09 12:11 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-methods.mo -rw-r--r-- root/root 4029 2021-11-09 12:11 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-parallel.mo -rw-r--r-- root/root 2852 2021-11-09 12:11 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-splines.mo -rw-r--r-- root/root 85651 2021-11-09 12:11 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-stats.mo -rw-r--r-- root/root 771 2021-11-09 12:11 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-stats4.mo -rw-r--r-- root/root 2202 2021-11-09 12:11 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-tcltk.mo -rw-r--r-- root/root 42478 2021-11-09 12:11 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-tools.mo -rw-r--r-- root/root 42712 2021-11-09 12:11 ./usr/lib/R/library/translations/de/LC_MESSAGES/R-utils.mo -rw-r--r-- root/root 165065 2021-11-09 12:11 ./usr/lib/R/library/translations/de/LC_MESSAGES/R.mo -rw-r--r-- root/root 20460 2021-11-09 12:11 ./usr/lib/R/library/translations/de/LC_MESSAGES/RGui.mo -rw-r--r-- root/root 17275 2021-11-09 12:11 ./usr/lib/R/library/translations/de/LC_MESSAGES/grDevices.mo -rw-r--r-- root/root 11736 2021-11-09 12:11 ./usr/lib/R/library/translations/de/LC_MESSAGES/graphics.mo -rw-r--r-- root/root 2627 2021-11-09 12:11 ./usr/lib/R/library/translations/de/LC_MESSAGES/grid.mo -rw-r--r-- root/root 5210 2021-11-09 12:11 ./usr/lib/R/library/translations/de/LC_MESSAGES/methods.mo -rw-r--r-- root/root 2589 2021-11-09 12:11 ./usr/lib/R/library/translations/de/LC_MESSAGES/parallel.mo -rw-r--r-- root/root 790 2021-11-09 12:11 ./usr/lib/R/library/translations/de/LC_MESSAGES/splines.mo -rw-r--r-- root/root 20964 2021-11-09 12:11 ./usr/lib/R/library/translations/de/LC_MESSAGES/stats.mo -rw-r--r-- root/root 1269 2021-11-09 12:11 ./usr/lib/R/library/translations/de/LC_MESSAGES/tcltk.mo -rw-r--r-- root/root 3573 2021-11-09 12:11 ./usr/lib/R/library/translations/de/LC_MESSAGES/tools.mo -rw-r--r-- root/root 5231 2021-11-09 12:11 ./usr/lib/R/library/translations/de/LC_MESSAGES/utils.mo drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/translations/en/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/translations/en/LC_MESSAGES/ -rw-r--r-- root/root 790 2021-11-09 12:11 ./usr/lib/R/library/translations/en/LC_MESSAGES/R.mo drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/translations/en@quot/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/ -rw-r--r-- root/root 61677 2021-11-09 12:11 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-base.mo -rw-r--r-- root/root 3951 2021-11-09 12:11 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-compiler.mo -rw-r--r-- root/root 14869 2021-11-09 12:11 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-grDevices.mo -rw-r--r-- root/root 16287 2021-11-09 12:11 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-graphics.mo -rw-r--r-- root/root 16085 2021-11-09 12:11 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-grid.mo -rw-r--r-- root/root 65639 2021-11-09 12:11 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-methods.mo -rw-r--r-- root/root 5007 2021-11-09 12:11 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-parallel.mo -rw-r--r-- root/root 2741 2021-11-09 12:11 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-splines.mo -rw-r--r-- root/root 86223 2021-11-09 12:11 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-stats.mo -rw-r--r-- root/root 1207 2021-11-09 12:11 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-stats4.mo -rw-r--r-- root/root 2113 2021-11-09 12:11 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-tcltk.mo -rw-r--r-- root/root 47463 2021-11-09 12:11 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-tools.mo -rw-r--r-- root/root 45499 2021-11-09 12:11 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R-utils.mo -rw-r--r-- root/root 167546 2021-11-09 12:11 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/R.mo -rw-r--r-- root/root 16458 2021-11-09 12:11 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/grDevices.mo -rw-r--r-- root/root 11610 2021-11-09 12:11 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/graphics.mo -rw-r--r-- root/root 4282 2021-11-09 12:11 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/grid.mo -rw-r--r-- root/root 5462 2021-11-09 12:11 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/methods.mo -rw-r--r-- root/root 2438 2021-11-09 12:11 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/parallel.mo -rw-r--r-- root/root 728 2021-11-09 12:11 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/splines.mo -rw-r--r-- root/root 22047 2021-11-09 12:11 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/stats.mo -rw-r--r-- root/root 1242 2021-11-09 12:11 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/tcltk.mo -rw-r--r-- root/root 3702 2021-11-09 12:11 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/tools.mo -rw-r--r-- root/root 5696 2021-11-09 12:11 ./usr/lib/R/library/translations/en@quot/LC_MESSAGES/utils.mo drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/translations/en_GB/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/translations/en_GB/LC_MESSAGES/ -rw-r--r-- root/root 360 2021-11-09 12:11 ./usr/lib/R/library/translations/en_GB/LC_MESSAGES/R-grDevices.mo -rw-r--r-- root/root 915 2021-11-09 12:11 ./usr/lib/R/library/translations/en_GB/LC_MESSAGES/R.mo -rw-r--r-- root/root 1125 2021-11-09 12:11 ./usr/lib/R/library/translations/en_GB/LC_MESSAGES/grDevices.mo drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/translations/es/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/translations/es/LC_MESSAGES/ -rw-r--r-- root/root 109587 2021-11-09 12:11 ./usr/lib/R/library/translations/es/LC_MESSAGES/R.mo -rw-r--r-- root/root 20758 2021-11-09 12:11 ./usr/lib/R/library/translations/es/LC_MESSAGES/RGui.mo -rw-r--r-- root/root 8940 2021-11-09 12:11 ./usr/lib/R/library/translations/es/LC_MESSAGES/graphics.mo drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/translations/fa/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/translations/fa/LC_MESSAGES/ -rw-r--r-- root/root 517 2021-11-09 12:11 ./usr/lib/R/library/translations/fa/LC_MESSAGES/R-base.mo -rw-r--r-- root/root 1620 2021-11-09 12:11 ./usr/lib/R/library/translations/fa/LC_MESSAGES/R-utils.mo -rw-r--r-- root/root 2167 2021-11-09 12:11 ./usr/lib/R/library/translations/fa/LC_MESSAGES/R.mo -rw-r--r-- root/root 26876 2021-11-09 12:11 ./usr/lib/R/library/translations/fa/LC_MESSAGES/RGui.mo drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/translations/fr/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/translations/fr/LC_MESSAGES/ -rw-r--r-- root/root 67917 2021-11-09 12:11 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-base.mo -rw-r--r-- root/root 4543 2021-11-09 12:11 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-compiler.mo -rw-r--r-- root/root 16551 2021-11-09 12:11 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-grDevices.mo -rw-r--r-- root/root 17476 2021-11-09 12:11 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-graphics.mo -rw-r--r-- root/root 17138 2021-11-09 12:11 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-grid.mo -rw-r--r-- root/root 67580 2021-11-09 12:11 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-methods.mo -rw-r--r-- root/root 3829 2021-11-09 12:11 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-parallel.mo -rw-r--r-- root/root 2967 2021-11-09 12:11 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-splines.mo -rw-r--r-- root/root 92731 2021-11-09 12:11 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-stats.mo -rw-r--r-- root/root 1470 2021-11-09 12:11 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-stats4.mo -rw-r--r-- root/root 2383 2021-11-09 12:11 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-tcltk.mo -rw-r--r-- root/root 51950 2021-11-09 12:11 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-tools.mo -rw-r--r-- root/root 49490 2021-11-09 12:11 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R-utils.mo -rw-r--r-- root/root 185128 2021-11-09 12:11 ./usr/lib/R/library/translations/fr/LC_MESSAGES/R.mo -rw-r--r-- root/root 21352 2021-11-09 12:11 ./usr/lib/R/library/translations/fr/LC_MESSAGES/RGui.mo -rw-r--r-- root/root 18578 2021-11-09 12:11 ./usr/lib/R/library/translations/fr/LC_MESSAGES/grDevices.mo -rw-r--r-- root/root 12650 2021-11-09 12:11 ./usr/lib/R/library/translations/fr/LC_MESSAGES/graphics.mo -rw-r--r-- root/root 4926 2021-11-09 12:11 ./usr/lib/R/library/translations/fr/LC_MESSAGES/grid.mo -rw-r--r-- root/root 6343 2021-11-09 12:11 ./usr/lib/R/library/translations/fr/LC_MESSAGES/methods.mo -rw-r--r-- root/root 2774 2021-11-09 12:11 ./usr/lib/R/library/translations/fr/LC_MESSAGES/parallel.mo -rw-r--r-- root/root 822 2021-11-09 12:11 ./usr/lib/R/library/translations/fr/LC_MESSAGES/splines.mo -rw-r--r-- root/root 23935 2021-11-09 12:11 ./usr/lib/R/library/translations/fr/LC_MESSAGES/stats.mo -rw-r--r-- root/root 1441 2021-11-09 12:11 ./usr/lib/R/library/translations/fr/LC_MESSAGES/tcltk.mo -rw-r--r-- root/root 4176 2021-11-09 12:11 ./usr/lib/R/library/translations/fr/LC_MESSAGES/tools.mo -rw-r--r-- root/root 5958 2021-11-09 12:11 ./usr/lib/R/library/translations/fr/LC_MESSAGES/utils.mo drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/translations/it/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/translations/it/LC_MESSAGES/ -rw-r--r-- root/root 64351 2021-11-09 12:11 ./usr/lib/R/library/translations/it/LC_MESSAGES/R-base.mo -rw-r--r-- root/root 4223 2021-11-09 12:11 ./usr/lib/R/library/translations/it/LC_MESSAGES/R-compiler.mo -rw-r--r-- root/root 15818 2021-11-09 12:11 ./usr/lib/R/library/translations/it/LC_MESSAGES/R-grDevices.mo -rw-r--r-- root/root 16825 2021-11-09 12:11 ./usr/lib/R/library/translations/it/LC_MESSAGES/R-graphics.mo -rw-r--r-- root/root 16434 2021-11-09 12:11 ./usr/lib/R/library/translations/it/LC_MESSAGES/R-grid.mo -rw-r--r-- root/root 70413 2021-11-09 12:11 ./usr/lib/R/library/translations/it/LC_MESSAGES/R-methods.mo -rw-r--r-- root/root 5426 2021-11-09 12:11 ./usr/lib/R/library/translations/it/LC_MESSAGES/R-parallel.mo -rw-r--r-- root/root 2892 2021-11-09 12:11 ./usr/lib/R/library/translations/it/LC_MESSAGES/R-splines.mo -rw-r--r-- root/root 89521 2021-11-09 12:11 ./usr/lib/R/library/translations/it/LC_MESSAGES/R-stats.mo -rw-r--r-- root/root 1318 2021-11-09 12:11 ./usr/lib/R/library/translations/it/LC_MESSAGES/R-stats4.mo -rw-r--r-- root/root 2291 2021-11-09 12:11 ./usr/lib/R/library/translations/it/LC_MESSAGES/R-tcltk.mo -rw-r--r-- root/root 49719 2021-11-09 12:11 ./usr/lib/R/library/translations/it/LC_MESSAGES/R-tools.mo -rw-r--r-- root/root 48005 2021-11-09 12:11 ./usr/lib/R/library/translations/it/LC_MESSAGES/R-utils.mo -rw-r--r-- root/root 179419 2021-11-09 12:11 ./usr/lib/R/library/translations/it/LC_MESSAGES/R.mo -rw-r--r-- root/root 20556 2021-11-09 12:11 ./usr/lib/R/library/translations/it/LC_MESSAGES/RGui.mo -rw-r--r-- root/root 17650 2021-11-09 12:11 ./usr/lib/R/library/translations/it/LC_MESSAGES/grDevices.mo -rw-r--r-- root/root 12298 2021-11-09 12:11 ./usr/lib/R/library/translations/it/LC_MESSAGES/graphics.mo -rw-r--r-- root/root 4592 2021-11-09 12:11 ./usr/lib/R/library/translations/it/LC_MESSAGES/grid.mo -rw-r--r-- root/root 5827 2021-11-09 12:11 ./usr/lib/R/library/translations/it/LC_MESSAGES/methods.mo -rw-r--r-- root/root 2657 2021-11-09 12:11 ./usr/lib/R/library/translations/it/LC_MESSAGES/parallel.mo -rw-r--r-- root/root 801 2021-11-09 12:11 ./usr/lib/R/library/translations/it/LC_MESSAGES/splines.mo -rw-r--r-- root/root 23196 2021-11-09 12:11 ./usr/lib/R/library/translations/it/LC_MESSAGES/stats.mo -rw-r--r-- root/root 1355 2021-11-09 12:11 ./usr/lib/R/library/translations/it/LC_MESSAGES/tcltk.mo -rw-r--r-- root/root 3971 2021-11-09 12:11 ./usr/lib/R/library/translations/it/LC_MESSAGES/tools.mo -rw-r--r-- root/root 6155 2021-11-09 12:11 ./usr/lib/R/library/translations/it/LC_MESSAGES/utils.mo drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/translations/ja/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/translations/ja/LC_MESSAGES/ -rw-r--r-- root/root 60084 2021-11-09 12:11 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-base.mo -rw-r--r-- root/root 3993 2021-11-09 12:11 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-compiler.mo -rw-r--r-- root/root 15258 2021-11-09 12:11 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-grDevices.mo -rw-r--r-- root/root 17852 2021-11-09 12:11 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-graphics.mo -rw-r--r-- root/root 17616 2021-11-09 12:11 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-grid.mo -rw-r--r-- root/root 74375 2021-11-09 12:11 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-methods.mo -rw-r--r-- root/root 3004 2021-11-09 12:11 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-splines.mo -rw-r--r-- root/root 94639 2021-11-09 12:11 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-stats.mo -rw-r--r-- root/root 905 2021-11-09 12:11 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-stats4.mo -rw-r--r-- root/root 2697 2021-11-09 12:11 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-tcltk.mo -rw-r--r-- root/root 47086 2021-11-09 12:11 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-tools.mo -rw-r--r-- root/root 45353 2021-11-09 12:11 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R-utils.mo -rw-r--r-- root/root 180561 2021-11-09 12:11 ./usr/lib/R/library/translations/ja/LC_MESSAGES/R.mo -rw-r--r-- root/root 23879 2021-11-09 12:11 ./usr/lib/R/library/translations/ja/LC_MESSAGES/RGui.mo -rw-r--r-- root/root 19848 2021-11-09 12:11 ./usr/lib/R/library/translations/ja/LC_MESSAGES/grDevices.mo -rw-r--r-- root/root 13508 2021-11-09 12:11 ./usr/lib/R/library/translations/ja/LC_MESSAGES/graphics.mo -rw-r--r-- root/root 3104 2021-11-09 12:11 ./usr/lib/R/library/translations/ja/LC_MESSAGES/grid.mo -rw-r--r-- root/root 5979 2021-11-09 12:11 ./usr/lib/R/library/translations/ja/LC_MESSAGES/methods.mo -rw-r--r-- root/root 486 2021-11-09 12:11 ./usr/lib/R/library/translations/ja/LC_MESSAGES/splines.mo -rw-r--r-- root/root 21474 2021-11-09 12:11 ./usr/lib/R/library/translations/ja/LC_MESSAGES/stats.mo -rw-r--r-- root/root 1394 2021-11-09 12:11 ./usr/lib/R/library/translations/ja/LC_MESSAGES/tcltk.mo -rw-r--r-- root/root 4112 2021-11-09 12:11 ./usr/lib/R/library/translations/ja/LC_MESSAGES/tools.mo drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/translations/ko/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/translations/ko/LC_MESSAGES/ -rw-r--r-- root/root 48202 2021-11-09 12:11 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-base.mo -rw-r--r-- root/root 2012 2021-11-09 12:11 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-compiler.mo -rw-r--r-- root/root 13682 2021-11-09 12:11 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-grDevices.mo -rw-r--r-- root/root 16233 2021-11-09 12:11 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-graphics.mo -rw-r--r-- root/root 14984 2021-11-09 12:11 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-grid.mo -rw-r--r-- root/root 55677 2021-11-09 12:11 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-methods.mo -rw-r--r-- root/root 3748 2021-11-09 12:11 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-parallel.mo -rw-r--r-- root/root 2950 2021-11-09 12:11 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-splines.mo -rw-r--r-- root/root 77674 2021-11-09 12:11 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-stats.mo -rw-r--r-- root/root 834 2021-11-09 12:11 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-stats4.mo -rw-r--r-- root/root 2473 2021-11-09 12:11 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-tcltk.mo -rw-r--r-- root/root 39742 2021-11-09 12:11 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-tools.mo -rw-r--r-- root/root 41077 2021-11-09 12:11 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R-utils.mo -rw-r--r-- root/root 155059 2021-11-09 12:11 ./usr/lib/R/library/translations/ko/LC_MESSAGES/R.mo -rw-r--r-- root/root 23156 2021-11-09 12:11 ./usr/lib/R/library/translations/ko/LC_MESSAGES/RGui.mo -rw-r--r-- root/root 17981 2021-11-09 12:11 ./usr/lib/R/library/translations/ko/LC_MESSAGES/grDevices.mo -rw-r--r-- root/root 12232 2021-11-09 12:11 ./usr/lib/R/library/translations/ko/LC_MESSAGES/graphics.mo -rw-r--r-- root/root 2866 2021-11-09 12:11 ./usr/lib/R/library/translations/ko/LC_MESSAGES/grid.mo -rw-r--r-- root/root 5694 2021-11-09 12:11 ./usr/lib/R/library/translations/ko/LC_MESSAGES/methods.mo -rw-r--r-- root/root 2439 2021-11-09 12:11 ./usr/lib/R/library/translations/ko/LC_MESSAGES/parallel.mo -rw-r--r-- root/root 785 2021-11-09 12:11 ./usr/lib/R/library/translations/ko/LC_MESSAGES/splines.mo -rw-r--r-- root/root 19873 2021-11-09 12:11 ./usr/lib/R/library/translations/ko/LC_MESSAGES/stats.mo -rw-r--r-- root/root 1431 2021-11-09 12:11 ./usr/lib/R/library/translations/ko/LC_MESSAGES/tcltk.mo -rw-r--r-- root/root 3643 2021-11-09 12:11 ./usr/lib/R/library/translations/ko/LC_MESSAGES/tools.mo -rw-r--r-- root/root 5262 2021-11-09 12:11 ./usr/lib/R/library/translations/ko/LC_MESSAGES/utils.mo drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/translations/lt/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/translations/lt/LC_MESSAGES/ -rw-r--r-- root/root 62082 2021-11-09 12:11 ./usr/lib/R/library/translations/lt/LC_MESSAGES/R-base.mo -rw-r--r-- root/root 4320 2021-11-09 12:11 ./usr/lib/R/library/translations/lt/LC_MESSAGES/R-compiler.mo -rw-r--r-- root/root 14905 2021-11-09 12:11 ./usr/lib/R/library/translations/lt/LC_MESSAGES/R-grDevices.mo -rw-r--r-- root/root 16754 2021-11-09 12:11 ./usr/lib/R/library/translations/lt/LC_MESSAGES/R-graphics.mo -rw-r--r-- root/root 16504 2021-11-09 12:11 ./usr/lib/R/library/translations/lt/LC_MESSAGES/R-grid.mo -rw-r--r-- root/root 5783 2021-11-09 12:11 ./usr/lib/R/library/translations/lt/LC_MESSAGES/R-parallel.mo -rw-r--r-- root/root 1416 2021-11-09 12:11 ./usr/lib/R/library/translations/lt/LC_MESSAGES/R-stats4.mo -rw-r--r-- root/root 2276 2021-11-09 12:11 ./usr/lib/R/library/translations/lt/LC_MESSAGES/R-tcltk.mo -rw-r--r-- root/root 46858 2021-11-09 12:11 ./usr/lib/R/library/translations/lt/LC_MESSAGES/R-utils.mo -rw-r--r-- root/root 171690 2021-11-09 12:11 ./usr/lib/R/library/translations/lt/LC_MESSAGES/R.mo -rw-r--r-- root/root 20732 2021-11-09 12:11 ./usr/lib/R/library/translations/lt/LC_MESSAGES/RGui.mo -rw-r--r-- root/root 17345 2021-11-09 12:11 ./usr/lib/R/library/translations/lt/LC_MESSAGES/grDevices.mo -rw-r--r-- root/root 12393 2021-11-09 12:11 ./usr/lib/R/library/translations/lt/LC_MESSAGES/graphics.mo -rw-r--r-- root/root 4599 2021-11-09 12:11 ./usr/lib/R/library/translations/lt/LC_MESSAGES/grid.mo -rw-r--r-- root/root 3181 2021-11-09 12:11 ./usr/lib/R/library/translations/lt/LC_MESSAGES/methods.mo -rw-r--r-- root/root 2652 2021-11-09 12:11 ./usr/lib/R/library/translations/lt/LC_MESSAGES/parallel.mo -rw-r--r-- root/root 846 2021-11-09 12:11 ./usr/lib/R/library/translations/lt/LC_MESSAGES/splines.mo -rw-r--r-- root/root 22752 2021-11-09 12:11 ./usr/lib/R/library/translations/lt/LC_MESSAGES/stats.mo -rw-r--r-- root/root 1389 2021-11-09 12:11 ./usr/lib/R/library/translations/lt/LC_MESSAGES/tcltk.mo -rw-r--r-- root/root 5538 2021-11-09 12:11 ./usr/lib/R/library/translations/lt/LC_MESSAGES/utils.mo drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/translations/nn/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/translations/nn/LC_MESSAGES/ -rw-r--r-- root/root 37489 2021-11-09 12:11 ./usr/lib/R/library/translations/nn/LC_MESSAGES/R-base.mo -rw-r--r-- root/root 119184 2021-11-09 12:11 ./usr/lib/R/library/translations/nn/LC_MESSAGES/R.mo -rw-r--r-- root/root 20174 2021-11-09 12:11 ./usr/lib/R/library/translations/nn/LC_MESSAGES/RGui.mo -rw-r--r-- root/root 9256 2021-11-09 12:11 ./usr/lib/R/library/translations/nn/LC_MESSAGES/graphics.mo drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/translations/pl/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/translations/pl/LC_MESSAGES/ -rw-r--r-- root/root 62951 2021-11-09 12:11 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-base.mo -rw-r--r-- root/root 4566 2021-11-09 12:11 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-compiler.mo -rw-r--r-- root/root 14633 2021-11-09 12:11 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-grDevices.mo -rw-r--r-- root/root 16798 2021-11-09 12:11 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-graphics.mo -rw-r--r-- root/root 16281 2021-11-09 12:11 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-grid.mo -rw-r--r-- root/root 68261 2021-11-09 12:11 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-methods.mo -rw-r--r-- root/root 4495 2021-11-09 12:11 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-parallel.mo -rw-r--r-- root/root 3047 2021-11-09 12:11 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-splines.mo -rw-r--r-- root/root 92278 2021-11-09 12:11 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-stats.mo -rw-r--r-- root/root 939 2021-11-09 12:11 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-stats4.mo -rw-r--r-- root/root 2435 2021-11-09 12:11 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-tcltk.mo -rw-r--r-- root/root 45677 2021-11-09 12:11 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-tools.mo -rw-r--r-- root/root 45400 2021-11-09 12:11 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R-utils.mo -rw-r--r-- root/root 170501 2021-11-09 12:11 ./usr/lib/R/library/translations/pl/LC_MESSAGES/R.mo -rw-r--r-- root/root 20938 2021-11-09 12:11 ./usr/lib/R/library/translations/pl/LC_MESSAGES/RGui.mo -rw-r--r-- root/root 17841 2021-11-09 12:11 ./usr/lib/R/library/translations/pl/LC_MESSAGES/grDevices.mo -rw-r--r-- root/root 12391 2021-11-09 12:11 ./usr/lib/R/library/translations/pl/LC_MESSAGES/graphics.mo -rw-r--r-- root/root 2845 2021-11-09 12:11 ./usr/lib/R/library/translations/pl/LC_MESSAGES/grid.mo -rw-r--r-- root/root 5229 2021-11-09 12:11 ./usr/lib/R/library/translations/pl/LC_MESSAGES/methods.mo -rw-r--r-- root/root 2849 2021-11-09 12:11 ./usr/lib/R/library/translations/pl/LC_MESSAGES/parallel.mo -rw-r--r-- root/root 963 2021-11-09 12:11 ./usr/lib/R/library/translations/pl/LC_MESSAGES/splines.mo -rw-r--r-- root/root 21868 2021-11-09 12:11 ./usr/lib/R/library/translations/pl/LC_MESSAGES/stats.mo -rw-r--r-- root/root 1434 2021-11-09 12:11 ./usr/lib/R/library/translations/pl/LC_MESSAGES/tcltk.mo -rw-r--r-- root/root 3840 2021-11-09 12:11 ./usr/lib/R/library/translations/pl/LC_MESSAGES/tools.mo -rw-r--r-- root/root 5540 2021-11-09 12:11 ./usr/lib/R/library/translations/pl/LC_MESSAGES/utils.mo drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/translations/pt_BR/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/ -rw-r--r-- root/root 30551 2021-11-09 12:11 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-base.mo -rw-r--r-- root/root 3362 2021-11-09 12:11 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-compiler.mo -rw-r--r-- root/root 9632 2021-11-09 12:11 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-grDevices.mo -rw-r--r-- root/root 12369 2021-11-09 12:11 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-graphics.mo -rw-r--r-- root/root 4647 2021-11-09 12:11 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-grid.mo -rw-r--r-- root/root 4809 2021-11-09 12:11 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-methods.mo -rw-r--r-- root/root 2087 2021-11-09 12:11 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-splines.mo -rw-r--r-- root/root 47251 2021-11-09 12:11 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-stats.mo -rw-r--r-- root/root 835 2021-11-09 12:11 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-stats4.mo -rw-r--r-- root/root 2289 2021-11-09 12:11 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-tcltk.mo -rw-r--r-- root/root 2075 2021-11-09 12:11 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-tools.mo -rw-r--r-- root/root 1182 2021-11-09 12:11 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R-utils.mo -rw-r--r-- root/root 125175 2021-11-09 12:11 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/R.mo -rw-r--r-- root/root 20688 2021-11-09 12:11 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/RGui.mo -rw-r--r-- root/root 2488 2021-11-09 12:11 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/grDevices.mo -rw-r--r-- root/root 9778 2021-11-09 12:11 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/graphics.mo -rw-r--r-- root/root 916 2021-11-09 12:11 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/grid.mo -rw-r--r-- root/root 4638 2021-11-09 12:11 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/methods.mo -rw-r--r-- root/root 593 2021-11-09 12:11 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/splines.mo -rw-r--r-- root/root 17007 2021-11-09 12:11 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/stats.mo -rw-r--r-- root/root 1329 2021-11-09 12:11 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/tcltk.mo -rw-r--r-- root/root 773 2021-11-09 12:11 ./usr/lib/R/library/translations/pt_BR/LC_MESSAGES/tools.mo drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/translations/ru/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/translations/ru/LC_MESSAGES/ -rw-r--r-- root/root 61406 2021-11-09 12:11 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-base.mo -rw-r--r-- root/root 5652 2021-11-09 12:11 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-compiler.mo -rw-r--r-- root/root 14921 2021-11-09 12:11 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-grDevices.mo -rw-r--r-- root/root 16722 2021-11-09 12:11 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-graphics.mo -rw-r--r-- root/root 16379 2021-11-09 12:11 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-grid.mo -rw-r--r-- root/root 67068 2021-11-09 12:11 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-methods.mo -rw-r--r-- root/root 5752 2021-11-09 12:11 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-parallel.mo -rw-r--r-- root/root 2951 2021-11-09 12:11 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-splines.mo -rw-r--r-- root/root 88706 2021-11-09 12:11 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-stats.mo -rw-r--r-- root/root 1486 2021-11-09 12:11 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-stats4.mo -rw-r--r-- root/root 2326 2021-11-09 12:11 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-tcltk.mo -rw-r--r-- root/root 44414 2021-11-09 12:11 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-tools.mo -rw-r--r-- root/root 46077 2021-11-09 12:11 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R-utils.mo -rw-r--r-- root/root 222801 2021-11-09 12:11 ./usr/lib/R/library/translations/ru/LC_MESSAGES/R.mo -rw-r--r-- root/root 20310 2021-11-09 12:11 ./usr/lib/R/library/translations/ru/LC_MESSAGES/RGui.mo -rw-r--r-- root/root 17087 2021-11-09 12:11 ./usr/lib/R/library/translations/ru/LC_MESSAGES/grDevices.mo -rw-r--r-- root/root 15847 2021-11-09 12:11 ./usr/lib/R/library/translations/ru/LC_MESSAGES/graphics.mo -rw-r--r-- root/root 4552 2021-11-09 12:11 ./usr/lib/R/library/translations/ru/LC_MESSAGES/grid.mo -rw-r--r-- root/root 5605 2021-11-09 12:11 ./usr/lib/R/library/translations/ru/LC_MESSAGES/methods.mo -rw-r--r-- root/root 2668 2021-11-09 12:11 ./usr/lib/R/library/translations/ru/LC_MESSAGES/parallel.mo -rw-r--r-- root/root 878 2021-11-09 12:11 ./usr/lib/R/library/translations/ru/LC_MESSAGES/splines.mo -rw-r--r-- root/root 22711 2021-11-09 12:11 ./usr/lib/R/library/translations/ru/LC_MESSAGES/stats.mo -rw-r--r-- root/root 1406 2021-11-09 12:11 ./usr/lib/R/library/translations/ru/LC_MESSAGES/tcltk.mo -rw-r--r-- root/root 3992 2021-11-09 12:11 ./usr/lib/R/library/translations/ru/LC_MESSAGES/tools.mo -rw-r--r-- root/root 5485 2021-11-09 12:11 ./usr/lib/R/library/translations/ru/LC_MESSAGES/utils.mo drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/translations/tr/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/translations/tr/LC_MESSAGES/ -rw-r--r-- root/root 754 2021-11-09 12:11 ./usr/lib/R/library/translations/tr/LC_MESSAGES/R-base.mo -rw-r--r-- root/root 31999 2021-11-09 12:11 ./usr/lib/R/library/translations/tr/LC_MESSAGES/R-stats.mo -rw-r--r-- root/root 773 2021-11-09 12:11 ./usr/lib/R/library/translations/tr/LC_MESSAGES/R-stats4.mo -rw-r--r-- root/root 486 2021-11-09 12:11 ./usr/lib/R/library/translations/tr/LC_MESSAGES/R-tools.mo -rw-r--r-- root/root 905 2021-11-09 12:11 ./usr/lib/R/library/translations/tr/LC_MESSAGES/R-utils.mo -rw-r--r-- root/root 118154 2021-11-09 12:11 ./usr/lib/R/library/translations/tr/LC_MESSAGES/R.mo -rw-r--r-- root/root 20643 2021-11-09 12:11 ./usr/lib/R/library/translations/tr/LC_MESSAGES/RGui.mo -rw-r--r-- root/root 9446 2021-11-09 12:11 ./usr/lib/R/library/translations/tr/LC_MESSAGES/graphics.mo drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_CN/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/ -rw-r--r-- root/root 44710 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-base.mo -rw-r--r-- root/root 3027 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-compiler.mo -rw-r--r-- root/root 11321 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-grDevices.mo -rw-r--r-- root/root 13554 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-graphics.mo -rw-r--r-- root/root 13029 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-grid.mo -rw-r--r-- root/root 56805 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-methods.mo -rw-r--r-- root/root 3230 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-parallel.mo -rw-r--r-- root/root 2258 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-splines.mo -rw-r--r-- root/root 71379 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-stats.mo -rw-r--r-- root/root 704 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-stats4.mo -rw-r--r-- root/root 2076 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-tcltk.mo -rw-r--r-- root/root 27157 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-tools.mo -rw-r--r-- root/root 32828 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R-utils.mo -rw-r--r-- root/root 132344 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/R.mo -rw-r--r-- root/root 17377 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/RGui.mo -rw-r--r-- root/root 14457 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/grDevices.mo -rw-r--r-- root/root 10341 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/graphics.mo -rw-r--r-- root/root 2246 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/grid.mo -rw-r--r-- root/root 4685 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/methods.mo -rw-r--r-- root/root 1868 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/parallel.mo -rw-r--r-- root/root 460 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/splines.mo -rw-r--r-- root/root 16153 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/stats.mo -rw-r--r-- root/root 1179 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/tcltk.mo -rw-r--r-- root/root 3186 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_CN/LC_MESSAGES/tools.mo drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_TW/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_TW/LC_MESSAGES/ -rw-r--r-- root/root 52619 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_TW/LC_MESSAGES/R-base.mo -rw-r--r-- root/root 3893 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_TW/LC_MESSAGES/R-compiler.mo -rw-r--r-- root/root 12524 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_TW/LC_MESSAGES/R-grDevices.mo -rw-r--r-- root/root 14742 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_TW/LC_MESSAGES/R-graphics.mo -rw-r--r-- root/root 14201 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_TW/LC_MESSAGES/R-grid.mo -rw-r--r-- root/root 3660 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_TW/LC_MESSAGES/R-parallel.mo -rw-r--r-- root/root 2708 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_TW/LC_MESSAGES/R-splines.mo -rw-r--r-- root/root 77943 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_TW/LC_MESSAGES/R-stats.mo -rw-r--r-- root/root 755 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_TW/LC_MESSAGES/R-stats4.mo -rw-r--r-- root/root 2167 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_TW/LC_MESSAGES/R-tcltk.mo -rw-r--r-- root/root 39368 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_TW/LC_MESSAGES/R-utils.mo -rw-r--r-- root/root 151057 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_TW/LC_MESSAGES/R.mo -rw-r--r-- root/root 17837 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_TW/LC_MESSAGES/RGui.mo -rw-r--r-- root/root 15675 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_TW/LC_MESSAGES/grDevices.mo -rw-r--r-- root/root 10877 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_TW/LC_MESSAGES/graphics.mo -rw-r--r-- root/root 2529 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_TW/LC_MESSAGES/grid.mo -rw-r--r-- root/root 4810 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_TW/LC_MESSAGES/methods.mo -rw-r--r-- root/root 2461 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_TW/LC_MESSAGES/parallel.mo -rw-r--r-- root/root 776 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_TW/LC_MESSAGES/splines.mo -rw-r--r-- root/root 19216 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_TW/LC_MESSAGES/stats.mo -rw-r--r-- root/root 1244 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_TW/LC_MESSAGES/tcltk.mo -rw-r--r-- root/root 3273 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_TW/LC_MESSAGES/tools.mo -rw-r--r-- root/root 4772 2021-11-09 12:11 ./usr/lib/R/library/translations/zh_TW/LC_MESSAGES/utils.mo drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/utils/ -rw-r--r-- root/root 424 2021-11-09 12:11 ./usr/lib/R/library/utils/DESCRIPTION -rw-r--r-- root/root 9198 2021-11-09 12:11 ./usr/lib/R/library/utils/INDEX drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/utils/Meta/ -rw-r--r-- root/root 7005 2021-11-09 12:11 ./usr/lib/R/library/utils/Meta/Rd.rds -rw-r--r-- root/root 123 2021-11-09 12:11 ./usr/lib/R/library/utils/Meta/features.rds -rw-r--r-- root/root 6904 2021-11-09 12:11 ./usr/lib/R/library/utils/Meta/hsearch.rds -rw-r--r-- root/root 3617 2021-11-09 12:11 ./usr/lib/R/library/utils/Meta/links.rds -rw-r--r-- root/root 2342 2021-11-09 12:11 ./usr/lib/R/library/utils/Meta/nsInfo.rds -rw-r--r-- root/root 628 2021-11-09 12:11 ./usr/lib/R/library/utils/Meta/package.rds -rw-r--r-- root/root 7186 2021-11-09 12:11 ./usr/lib/R/library/utils/NAMESPACE drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/utils/R/ -rw-r--r-- root/root 14349 2021-11-09 12:11 ./usr/lib/R/library/utils/R/sysdata.rdb -rw-r--r-- root/root 195 2021-11-09 12:11 ./usr/lib/R/library/utils/R/sysdata.rdx -rw-r--r-- root/root 1058 2021-11-09 12:11 ./usr/lib/R/library/utils/R/utils -rw-r--r-- root/root 943995 2021-11-09 12:11 ./usr/lib/R/library/utils/R/utils.rdb -rw-r--r-- root/root 7132 2021-11-09 12:11 ./usr/lib/R/library/utils/R/utils.rdx drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/utils/Sweave/ -rw-r--r-- root/root 1305 2021-11-09 12:11 ./usr/lib/R/library/utils/Sweave/Sweave-test-1.Rnw -rw-r--r-- root/root 725 2021-11-09 12:11 ./usr/lib/R/library/utils/Sweave/example-1.Rnw drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/utils/doc/ -rw-r--r-- root/root 322458 2021-11-09 12:11 ./usr/lib/R/library/utils/doc/Sweave.pdf drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/utils/help/ -rw-r--r-- root/root 8319 2021-11-09 12:11 ./usr/lib/R/library/utils/help/AnIndex -rw-r--r-- root/root 3086 2021-11-09 12:11 ./usr/lib/R/library/utils/help/aliases.rds -rw-r--r-- root/root 1420 2021-11-09 12:11 ./usr/lib/R/library/utils/help/paths.rds -rw-r--r-- root/root 769359 2021-11-09 12:11 ./usr/lib/R/library/utils/help/utils.rdb -rw-r--r-- root/root 3540 2021-11-09 12:11 ./usr/lib/R/library/utils/help/utils.rdx drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/utils/html/ -rw-r--r-- root/root 13586 2021-11-09 12:11 ./usr/lib/R/library/utils/iconvlist drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/utils/libs/ -rw-r--r-- root/root 43744 2021-11-09 12:11 ./usr/lib/R/library/utils/libs/utils.so drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/library/utils/misc/ -rw-r--r-- root/root 38 2021-11-09 12:11 ./usr/lib/R/library/utils/misc/exDIF.csv -rw-r--r-- root/root 242 2021-11-09 12:11 ./usr/lib/R/library/utils/misc/exDIF.dif drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/modules/ -rw-r--r-- root/root 155888 2021-11-09 12:11 ./usr/lib/R/modules/R_X11.so -rw-r--r-- root/root 44112 2021-11-09 12:11 ./usr/lib/R/modules/R_de.so -rw-r--r-- root/root 68440 2021-11-09 12:11 ./usr/lib/R/modules/internet.so -rw-r--r-- root/root 43224 2021-11-09 12:11 ./usr/lib/R/modules/lapack.so drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/R/site-library/ lrwxrwxrwx root/root 0 2021-11-09 12:11 ./usr/lib/libR.so -> R/lib/libR.so drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/pkgconfig/ -rw-r--r-- root/root 274 2021-11-09 12:11 ./usr/lib/pkgconfig/libR.pc drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/R/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/R/doc/ -rw-r--r-- root/root 1013 2021-11-09 12:11 ./usr/share/R/doc/AUTHORS -rw-r--r-- root/root 3283 2021-11-09 12:11 ./usr/share/R/doc/BioC_mirrors.csv lrwxrwxrwx root/root 0 2021-11-09 12:11 ./usr/share/R/doc/COPYING -> ../../common-licenses/GPL-2 -rw-r--r-- root/root 26713 2021-11-09 12:11 ./usr/share/R/doc/COPYRIGHTS -rw-r--r-- root/root 17498 2021-11-09 12:11 ./usr/share/R/doc/CRAN_mirrors.csv -rw-r--r-- root/root 119385 2021-11-09 12:11 ./usr/share/R/doc/FAQ -rw-r--r-- root/root 2530 2021-11-09 12:11 ./usr/share/R/doc/KEYWORDS -rw-r--r-- root/root 3047 2021-11-09 12:11 ./usr/share/R/doc/KEYWORDS.db -rw-r--r-- root/root 73933 2021-11-09 12:11 ./usr/share/R/doc/NEWS -rw-r--r-- root/root 93568 2021-11-09 12:11 ./usr/share/R/doc/NEWS.0 -rw-r--r-- root/root 294277 2021-11-09 12:11 ./usr/share/R/doc/NEWS.1 -rw-r--r-- root/root 641792 2021-11-09 12:11 ./usr/share/R/doc/NEWS.2 -rw-r--r-- root/root 407680 2021-11-09 12:11 ./usr/share/R/doc/NEWS.2.rds -rw-r--r-- root/root 325075 2021-11-09 12:11 ./usr/share/R/doc/NEWS.3 -rw-r--r-- root/root 529727 2021-11-09 12:11 ./usr/share/R/doc/NEWS.3.rds -rw-r--r-- root/root 241269 2021-11-09 12:11 ./usr/share/R/doc/NEWS.pdf -rw-r--r-- root/root 122076 2021-11-09 12:11 ./usr/share/R/doc/NEWS.rds -rw-r--r-- root/root 1253 2021-11-09 12:11 ./usr/share/R/doc/RESOURCES -rw-r--r-- root/root 3776 2021-11-09 12:11 ./usr/share/R/doc/THANKS drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/R/doc/html/ -rw-r--r-- root/root 354020 2021-11-09 12:11 ./usr/share/R/doc/html/NEWS.2.html -rw-r--r-- root/root 453813 2021-11-09 12:11 ./usr/share/R/doc/html/NEWS.3.html -rw-r--r-- root/root 104742 2021-11-09 12:11 ./usr/share/R/doc/html/NEWS.html -rw-r--r-- root/root 1335 2021-11-09 12:11 ./usr/share/R/doc/html/R.css -rw-r--r-- root/root 6755 2021-11-09 12:11 ./usr/share/R/doc/html/Rlogo.pdf -rw-r--r-- root/root 2693 2021-11-09 12:11 ./usr/share/R/doc/html/Rlogo.svg -rw-r--r-- root/root 728 2021-11-09 12:11 ./usr/share/R/doc/html/Search.html -rw-r--r-- root/root 7918 2021-11-09 12:11 ./usr/share/R/doc/html/SearchOn.html -rw-r--r-- root/root 2091 2021-11-09 12:11 ./usr/share/R/doc/html/about.html -rw-r--r-- root/root 5430 2021-11-09 12:11 ./usr/share/R/doc/html/favicon.ico -rw-r--r-- root/root 2272 2021-11-09 12:11 ./usr/share/R/doc/html/index.html -rw-r--r-- root/root 1013 2021-11-09 12:11 ./usr/share/R/doc/html/left.jpg -rw-r--r-- root/root 15985 2021-11-09 12:11 ./usr/share/R/doc/html/logo.jpg -rw-r--r-- root/root 540 2021-11-09 12:11 ./usr/share/R/doc/html/packages-head-utf8.html -rw-r--r-- root/root 3061 2021-11-09 12:11 ./usr/share/R/doc/html/packages.html -rw-r--r-- root/root 4621 2021-11-09 12:11 ./usr/share/R/doc/html/resources.html -rw-r--r-- root/root 1022 2021-11-09 12:11 ./usr/share/R/doc/html/right.jpg -rw-r--r-- root/root 1021 2021-11-09 12:11 ./usr/share/R/doc/html/up.jpg drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/R/doc/manual/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/R/doc/manual/images/ -rw-r--r-- root/root 5600 2021-11-09 12:11 ./usr/share/R/doc/manual/images/QQ.png -rw-r--r-- root/root 4057 2021-11-09 12:11 ./usr/share/R/doc/manual/images/ecdf.png -rw-r--r-- root/root 2908 2021-11-09 12:11 ./usr/share/R/doc/manual/images/fig11.png -rw-r--r-- root/root 3008 2021-11-09 12:11 ./usr/share/R/doc/manual/images/fig12.png -rw-r--r-- root/root 6876 2021-11-09 12:11 ./usr/share/R/doc/manual/images/hist.png -rw-r--r-- root/root 1772 2021-11-09 12:11 ./usr/share/R/doc/manual/images/ice.png drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/R/include/ -rw-r--r-- root/root 3063 2021-11-09 12:11 ./usr/share/R/include/R.h drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/R/include/R_ext/ -rw-r--r-- root/root 6084 2021-11-09 12:11 ./usr/share/R/include/R_ext/Altrep.h -rw-r--r-- root/root 5858 2021-11-09 12:11 ./usr/share/R/include/R_ext/Applic.h -rw-r--r-- root/root 2938 2021-11-09 12:11 ./usr/share/R/include/R_ext/Arith.h -rw-r--r-- root/root 18461 2021-11-09 12:11 ./usr/share/R/include/R_ext/BLAS.h -rw-r--r-- root/root 1307 2021-11-09 12:11 ./usr/share/R/include/R_ext/Boolean.h -rw-r--r-- root/root 4188 2021-11-09 12:11 ./usr/share/R/include/R_ext/Callbacks.h -rw-r--r-- root/root 1262 2021-11-09 12:11 ./usr/share/R/include/R_ext/Complex.h -rw-r--r-- root/root 3408 2021-11-09 12:11 ./usr/share/R/include/R_ext/Connections.h -rw-r--r-- root/root 1752 2021-11-09 12:11 ./usr/share/R/include/R_ext/Constants.h -rw-r--r-- root/root 1591 2021-11-09 12:11 ./usr/share/R/include/R_ext/Error.h -rw-r--r-- root/root 1082 2021-11-09 12:11 ./usr/share/R/include/R_ext/GetX11Image.h -rw-r--r-- root/root 31886 2021-11-09 12:11 ./usr/share/R/include/R_ext/GraphicsDevice.h -rw-r--r-- root/root 21311 2021-11-09 12:11 ./usr/share/R/include/R_ext/GraphicsEngine.h -rw-r--r-- root/root 8526 2021-11-09 12:11 ./usr/share/R/include/R_ext/Itermacros.h -rw-r--r-- root/root 127695 2021-11-09 12:11 ./usr/share/R/include/R_ext/Lapack.h -rw-r--r-- root/root 4603 2021-11-09 12:11 ./usr/share/R/include/R_ext/Linpack.h -rw-r--r-- root/root 1577 2021-11-09 12:11 ./usr/share/R/include/R_ext/MathThreads.h -rw-r--r-- root/root 1822 2021-11-09 12:11 ./usr/share/R/include/R_ext/Memory.h -rw-r--r-- root/root 1281 2021-11-09 12:11 ./usr/share/R/include/R_ext/Parse.h -rw-r--r-- root/root 1799 2021-11-09 12:11 ./usr/share/R/include/R_ext/Print.h -rw-r--r-- root/root 3277 2021-11-09 12:11 ./usr/share/R/include/R_ext/PrtUtil.h -rw-r--r-- root/root 10981 2021-11-09 12:11 ./usr/share/R/include/R_ext/QuartzDevice.h -rw-r--r-- root/root 2508 2021-11-09 12:11 ./usr/share/R/include/R_ext/R-ftp-http.h -rw-r--r-- root/root 3593 2021-11-09 12:11 ./usr/share/R/include/R_ext/RS.h -rw-r--r-- root/root 3222 2021-11-09 12:11 ./usr/share/R/include/R_ext/RStartup.h -rw-r--r-- root/root 2010 2021-11-09 12:11 ./usr/share/R/include/R_ext/Rallocators.h -rw-r--r-- root/root 2115 2021-11-09 12:11 ./usr/share/R/include/R_ext/Random.h -rw-r--r-- root/root 3522 2021-11-09 12:11 ./usr/share/R/include/R_ext/Rdynload.h -rw-r--r-- root/root 1548 2021-11-09 12:11 ./usr/share/R/include/R_ext/Riconv.h -rw-r--r-- root/root 4135 2021-11-09 12:11 ./usr/share/R/include/R_ext/Utils.h -rw-r--r-- root/root 1470 2021-11-09 12:11 ./usr/share/R/include/R_ext/Visibility.h -rw-r--r-- root/root 3353 2021-11-09 12:11 ./usr/share/R/include/R_ext/eventloop.h -rw-r--r-- root/root 1769 2021-11-09 12:11 ./usr/share/R/include/R_ext/libextern.h -rw-r--r-- root/root 2838 2021-11-09 12:11 ./usr/share/R/include/R_ext/stats_package.h -rw-r--r-- root/root 3193 2021-11-09 12:11 ./usr/share/R/include/R_ext/stats_stubs.h -rw-r--r-- root/root 808 2021-11-09 12:11 ./usr/share/R/include/Rconfig.h -rw-r--r-- root/root 6791 2021-11-09 12:11 ./usr/share/R/include/Rdefines.h -rw-r--r-- root/root 2075 2021-11-09 12:11 ./usr/share/R/include/Rembedded.h -rw-r--r-- root/root 5459 2021-11-09 12:11 ./usr/share/R/include/Rinterface.h -rw-r--r-- root/root 63180 2021-11-09 12:11 ./usr/share/R/include/Rinternals.h -rw-r--r-- root/root 17437 2021-11-09 12:11 ./usr/share/R/include/Rmath.h -rw-r--r-- root/root 498 2021-11-09 12:11 ./usr/share/R/include/Rversion.h -rw-r--r-- root/root 2593 2021-11-09 12:11 ./usr/share/R/include/S.h drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/R/share/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/R/share/R/ -rw-r--r-- root/root 3084 2021-11-09 12:11 ./usr/share/R/share/R/REMOVE.R -rw-r--r-- root/root 283 2021-11-09 12:11 ./usr/share/R/share/R/examples-footer.R -rw-r--r-- root/root 3915 2021-11-09 12:11 ./usr/share/R/share/R/examples-header.R -rw-r--r-- root/root 1058 2021-11-09 12:11 ./usr/share/R/share/R/nspackloader.R -rw-r--r-- root/root 131 2021-11-09 12:11 ./usr/share/R/share/R/tests-startup.R drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/R/share/Rd/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/R/share/Rd/macros/ -rw-r--r-- root/root 2364 2021-11-09 12:11 ./usr/share/R/share/Rd/macros/system.Rd drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/R/share/dictionaries/ -rw-r--r-- root/root 2614 2021-11-09 12:11 ./usr/share/R/share/dictionaries/en_stats.rds drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/R/share/encodings/ -rw-r--r-- root/root 74056 2021-11-09 12:11 ./usr/share/R/share/encodings/Adobe-glyphlist -rw-r--r-- root/root 53369 2021-11-09 12:11 ./usr/share/R/share/encodings/character-sets drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/R/share/java/ -rw-r--r-- root/root 87 2021-11-09 12:11 ./usr/share/R/share/java/README -rw-r--r-- root/root 1356 2021-11-09 12:11 ./usr/share/R/share/java/getsp.class drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/R/share/licenses/ -rw-r--r-- root/root 34523 2021-11-09 12:11 ./usr/share/R/share/licenses/AGPL-3 -rw-r--r-- root/root 9073 2021-11-09 12:11 ./usr/share/R/share/licenses/Artistic-2.0 -rw-r--r-- root/root 1630 2021-11-09 12:11 ./usr/share/R/share/licenses/BSD_2_clause -rw-r--r-- root/root 1844 2021-11-09 12:11 ./usr/share/R/share/licenses/BSD_3_clause -rw-r--r-- root/root 18092 2021-11-09 12:11 ./usr/share/R/share/licenses/GPL-2 -rw-r--r-- root/root 35149 2021-11-09 12:11 ./usr/share/R/share/licenses/GPL-3 -rw-r--r-- root/root 25292 2021-11-09 12:11 ./usr/share/R/share/licenses/LGPL-2 -rw-r--r-- root/root 26530 2021-11-09 12:11 ./usr/share/R/share/licenses/LGPL-2.1 -rw-r--r-- root/root 7652 2021-11-09 12:11 ./usr/share/R/share/licenses/LGPL-3 -rw-r--r-- root/root 1380 2021-11-09 12:11 ./usr/share/R/share/licenses/MIT -rw-r--r-- root/root 9962 2021-11-09 12:11 ./usr/share/R/share/licenses/license.db drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/R/share/make/ -rw-r--r-- root/root 6647 2021-11-09 12:11 ./usr/share/R/share/make/basepkg.mk -rw-r--r-- root/root 482 2021-11-09 12:11 ./usr/share/R/share/make/check_vars_ini.mk -rw-r--r-- root/root 812 2021-11-09 12:11 ./usr/share/R/share/make/check_vars_out.mk -rw-r--r-- root/root 86 2021-11-09 12:11 ./usr/share/R/share/make/clean.mk -rw-r--r-- root/root 92 2021-11-09 12:11 ./usr/share/R/share/make/config.mk -rw-r--r-- root/root 785 2021-11-09 12:11 ./usr/share/R/share/make/lazycomp.mk -rw-r--r-- root/root 568 2021-11-09 12:11 ./usr/share/R/share/make/shlib.mk -rw-r--r-- root/root 918 2021-11-09 12:11 ./usr/share/R/share/make/vars.mk -rw-r--r-- root/root 1273 2021-11-09 12:11 ./usr/share/R/share/make/winshlib.mk drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/R/share/sh/ -rwxr-xr-x root/root 27 2021-11-09 12:11 ./usr/share/R/share/sh/echo.sh drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/R/share/texmf/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/R/share/texmf/bibtex/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/R/share/texmf/bibtex/bib/ -rw-r--r-- root/root 248785 2021-11-09 12:11 ./usr/share/R/share/texmf/bibtex/bib/RJournal.bib -rw-r--r-- root/root 72374 2021-11-09 12:11 ./usr/share/R/share/texmf/bibtex/bib/Rnews.bib drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/R/share/texmf/bibtex/bst/ -rw-r--r-- root/root 32989 2021-11-09 12:11 ./usr/share/R/share/texmf/bibtex/bst/jss.bst drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/R/share/texmf/tex/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/R/share/texmf/tex/latex/ -rw-r--r-- root/root 15168 2021-11-09 12:11 ./usr/share/R/share/texmf/tex/latex/Rd.sty -rw-r--r-- root/root 1635 2021-11-09 12:11 ./usr/share/R/share/texmf/tex/latex/Sweave.sty -rw-r--r-- root/root 14943 2021-11-09 12:11 ./usr/share/R/share/texmf/tex/latex/jss.cls -rw-r--r-- root/root 644 2021-11-09 12:11 ./usr/share/R/share/texmf/tex/latex/omsaer.fd -rw-r--r-- root/root 607 2021-11-09 12:11 ./usr/share/R/share/texmf/tex/latex/omsaett.fd -rw-r--r-- root/root 607 2021-11-09 12:11 ./usr/share/R/share/texmf/tex/latex/omscmtt.fd -rw-r--r-- root/root 534 2021-11-09 12:11 ./usr/share/R/share/texmf/tex/latex/ts1aer.fd -rw-r--r-- root/root 299 2021-11-09 12:11 ./usr/share/R/share/texmf/tex/latex/ts1aett.fd drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/applications/ -rw-r--r-- root/root 233 2021-11-09 12:11 ./usr/share/applications/R.desktop drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/bash-completion/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/bash-completion/completions/ -rw-r--r-- root/root 13596 2021-04-27 12:17 ./usr/share/bash-completion/completions/R drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/doc/r-base-core/ -rw-r--r-- root/root 35933 2018-09-25 08:43 ./usr/share/doc/r-base-core/NEWS.0.gz -rw-r--r-- root/root 108753 2018-09-25 08:43 ./usr/share/doc/r-base-core/NEWS.1.gz -rw-r--r-- root/root 96630 2020-03-26 23:02 ./usr/share/doc/r-base-core/NEWS.2.Rd.gz -rw-r--r-- root/root 229641 2021-04-19 22:02 ./usr/share/doc/r-base-core/NEWS.2.gz -rw-r--r-- root/root 397696 2021-11-09 12:11 ./usr/share/doc/r-base-core/NEWS.2.rds.gz -rw-r--r-- root/root 122261 2021-04-19 22:02 ./usr/share/doc/r-base-core/NEWS.3.Rd.gz -rw-r--r-- root/root 113067 2021-04-19 22:02 ./usr/share/doc/r-base-core/NEWS.3.gz -rw-r--r-- root/root 516481 2021-11-09 12:11 ./usr/share/doc/r-base-core/NEWS.3.rds.gz -rw-r--r-- root/root 29483 2021-10-21 22:04 ./usr/share/doc/r-base-core/NEWS.Rd.gz lrwxrwxrwx root/root 0 2021-11-09 12:11 ./usr/share/doc/r-base-core/NEWS.gz -> changelog.gz -rw-r--r-- root/root 237290 2021-11-09 12:11 ./usr/share/doc/r-base-core/NEWS.pdf.gz -rw-r--r-- root/root 119634 2021-11-09 12:11 ./usr/share/doc/r-base-core/NEWS.rds.gz -rw-r--r-- root/root 2739 2021-04-27 12:17 ./usr/share/doc/r-base-core/README.Atlas.gz -rw-r--r-- root/root 2107 2018-09-25 08:47 ./usr/share/doc/r-base-core/README.gz -rw-r--r-- root/root 3026 2021-04-27 12:17 ./usr/share/doc/r-base-core/README.mathlib -rw-r--r-- root/root 1068 2021-11-09 12:11 ./usr/share/doc/r-base-core/changelog.Debian.gz -rw-r--r-- root/root 20761 2021-04-27 12:17 ./usr/share/doc/r-base-core/copyright lrwxrwxrwx root/root 0 2021-11-09 12:11 ./usr/share/doc/r-base-core/doc -> ../../R/doc lrwxrwxrwx root/root 0 2021-11-09 12:11 ./usr/share/doc/r-base-core/library -> ../../../lib/R/library drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/icons/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/icons/hicolor/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/icons/hicolor/48x48/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/icons/hicolor/48x48/apps/ -rw-r--r-- root/root 2422 2021-11-09 12:11 ./usr/share/icons/hicolor/48x48/apps/rlogo_icon.png drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/icons/hicolor/scalable/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/icons/hicolor/scalable/apps/ -rw-r--r-- root/root 2009 2021-11-09 12:11 ./usr/share/icons/hicolor/scalable/apps/rlogo_icon.svg drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/info/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/lintian/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 7851 2021-04-27 12:17 ./usr/share/lintian/overrides/r-base-core drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/man/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/man/man1/ -rw-r--r-- root/root 2588 2021-11-09 12:11 ./usr/share/man/man1/R.1.gz -rw-r--r-- root/root 662 2021-11-09 12:11 ./usr/share/man/man1/Rscript.1.gz drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/texmf/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/texmf/tex/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/texmf/tex/latex/ lrwxrwxrwx root/root 0 2021-11-09 12:11 ./usr/share/texmf/tex/latex/R -> ../../../R/share/texmf r-mathlib_4.1.2-1ubuntu1_riscv64.deb ------------------------------------ new Debian package, version 2.0. size 2318734 bytes: control archive=2097 bytes. 1862 bytes, 40 lines control 1431 bytes, 21 lines md5sums 369 bytes, 27 lines * postinst #!/bin/sh 21 bytes, 1 lines shlibs 74 bytes, 2 lines triggers Package: r-mathlib Source: r-base Version: 4.1.2-1ubuntu1 Architecture: riscv64 Maintainer: Ubuntu Developers Installed-Size: 3956 Depends: libc6 (>= 2.27) Recommends: r-base-core (= 4.1.2-1ubuntu1), r-base-dev (= 4.1.2-1ubuntu1) Section: gnu-r Priority: optional Homepage: http://www.r-project.org/ Description: GNU R standalone mathematics library R is a system for statistical computation and graphics. It consists of a language plus a run-time environment with graphics, a debugger, access to certain system functions, and the ability to run programs stored in script files. . The design of R has been heavily influenced by two existing languages: Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the resulting language is very similar in appearance to S, the underlying implementation and semantics are derived from Scheme. . The core of R is an interpreted computer language which allows branching and looping as well as modular programming using functions. Most of the user-visible functions in R are written in R. It is possible for the user to interface to procedures written in the C, C++, or FORTRAN languages for efficiency, and many of R's core functions do so. The R distribution contains functionality for a large number of statistical procedures and underlying applied math computations. There is also a large set of functions which provide a flexible graphical environment for creating various kinds of data presentations. . Additionally, several thousand extension "packages" are available from CRAN, the Comprehensive R Archive Network, many also as Debian packages, named 'r-cran-'. . This package provides the libRmath shared and static libraries which can be called from standalone C or C++ code. Original-Maintainer: Dirk Eddelbuettel drwxr-xr-x root/root 0 2021-11-09 12:11 ./ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/include/ -rw-r--r-- root/root 17437 2021-11-09 12:11 ./usr/include/Rmath.h drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/ -rw-r--r-- root/root 1760320 2021-11-09 12:11 ./usr/lib/libRmath.a lrwxrwxrwx root/root 0 2021-11-09 12:11 ./usr/lib/libRmath.so -> libRmath.so.1 lrwxrwxrwx root/root 0 2021-11-09 12:11 ./usr/lib/libRmath.so.1 -> libRmath.so.1.0.0 -rw-r--r-- root/root 145392 2021-11-09 12:11 ./usr/lib/libRmath.so.1.0.0 drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/lib/pkgconfig/ -rw-r--r-- root/root 173 2021-11-09 12:11 ./usr/lib/pkgconfig/libRmath.pc drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/doc/r-mathlib/ -rw-r--r-- root/root 35933 2018-09-25 08:43 ./usr/share/doc/r-mathlib/NEWS.0.gz -rw-r--r-- root/root 108753 2018-09-25 08:43 ./usr/share/doc/r-mathlib/NEWS.1.gz -rw-r--r-- root/root 96630 2020-03-26 23:02 ./usr/share/doc/r-mathlib/NEWS.2.Rd.gz -rw-r--r-- root/root 229641 2021-04-19 22:02 ./usr/share/doc/r-mathlib/NEWS.2.gz -rw-r--r-- root/root 397696 2021-11-09 12:11 ./usr/share/doc/r-mathlib/NEWS.2.rds.gz -rw-r--r-- root/root 122261 2021-04-19 22:02 ./usr/share/doc/r-mathlib/NEWS.3.Rd.gz -rw-r--r-- root/root 113067 2021-04-19 22:02 ./usr/share/doc/r-mathlib/NEWS.3.gz -rw-r--r-- root/root 516481 2021-11-09 12:11 ./usr/share/doc/r-mathlib/NEWS.3.rds.gz -rw-r--r-- root/root 29483 2021-10-21 22:04 ./usr/share/doc/r-mathlib/NEWS.Rd.gz lrwxrwxrwx root/root 0 2021-11-09 12:11 ./usr/share/doc/r-mathlib/NEWS.gz -> changelog.gz -rw-r--r-- root/root 237290 2021-11-09 12:11 ./usr/share/doc/r-mathlib/NEWS.pdf.gz -rw-r--r-- root/root 119634 2021-11-09 12:11 ./usr/share/doc/r-mathlib/NEWS.rds.gz -rw-r--r-- root/root 2107 2018-09-25 08:47 ./usr/share/doc/r-mathlib/README.gz -rw-r--r-- root/root 3026 2021-04-27 12:17 ./usr/share/doc/r-mathlib/README.mathlib -rw-r--r-- root/root 1072 2021-11-09 12:11 ./usr/share/doc/r-mathlib/changelog.Debian.gz -rw-r--r-- root/root 20761 2021-04-27 12:17 ./usr/share/doc/r-mathlib/copyright drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/doc/r-mathlib/examples/ -rw-r--r-- root/root 1371 2018-09-25 08:46 ./usr/share/doc/r-mathlib/examples/test.c drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/lintian/ drwxr-xr-x root/root 0 2021-11-09 12:11 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 364 2021-04-27 12:17 ./usr/share/lintian/overrides/r-mathlib +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: riscv64 Build Type: any Build-Space: 475844 Build-Time: 9070 Distribution: jammy-proposed Host Architecture: riscv64 Install-Time: 2274 Job: r-base_4.1.2-1ubuntu1.dsc Machine Architecture: riscv64 Package: r-base Package-Time: 11399 Source-Version: 4.1.2-1ubuntu1 Space: 475844 Status: successful Version: 4.1.2-1ubuntu1 -------------------------------------------------------------------------------- Finished at 2021-11-09T16:30:18Z Build needed 03:09:59, 475844k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=jammy --arch=riscv64 PACKAGEBUILD-22387473 Scanning for processes to kill in build PACKAGEBUILD-22387473 RUN: /usr/share/launchpad-buildd/bin/in-target umount-chroot --backend=chroot --series=jammy --arch=riscv64 PACKAGEBUILD-22387473 Stopping target for build PACKAGEBUILD-22387473 RUN: /usr/share/launchpad-buildd/bin/in-target remove-build --backend=chroot --series=jammy --arch=riscv64 PACKAGEBUILD-22387473 Removing build PACKAGEBUILD-22387473