https://launchpad.net/ubuntu/+source/r-base/4.3.2-1build1/+build/27575133 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-ppc64el-017 5.4.0-169-generic #187-Ubuntu SMP Thu Nov 23 14:52:15 UTC 2023 ppc64le Buildd toolchain package versions: launchpad-buildd_235~645~ubuntu20.04.1 python3-lpbuildd_235~645~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 19 Dec 09:43:40 ntpdate[1972]: adjust time server 10.211.37.1 offset -0.000717 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=ppc64el PACKAGEBUILD-27575133 --image-type chroot /home/buildd/filecache-default/d42c54d6e204d222772cc047f01d282d9c30a0e5 Creating target for build PACKAGEBUILD-27575133 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=ppc64el PACKAGEBUILD-27575133 Starting target for build PACKAGEBUILD-27575133 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=ppc64el PACKAGEBUILD-27575133 'deb http://ftpmaster.internal/ubuntu noble main universe' 'deb http://ftpmaster.internal/ubuntu noble-security main universe' 'deb http://ftpmaster.internal/ubuntu noble-updates main universe' 'deb http://ftpmaster.internal/ubuntu noble-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-27575133 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=ppc64el PACKAGEBUILD-27575133 Updating target for build PACKAGEBUILD-27575133 Get:1 http://ftpmaster.internal/ubuntu noble InRelease [240 kB] Get:2 http://ftpmaster.internal/ubuntu noble-security InRelease [74.9 kB] Get:3 http://ftpmaster.internal/ubuntu noble-updates InRelease [74.9 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease [102 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el Packages [1348 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main Translation-en [515 kB] Get:7 http://ftpmaster.internal/ubuntu noble/universe ppc64el Packages [15.1 MB] Get:8 http://ftpmaster.internal/ubuntu noble/universe Translation-en [6031 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [104 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main Translation-en [36.8 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [1006 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe Translation-en [309 kB] Fetched 25.0 MB in 7s (3694 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libunistring2 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: libunistring5 The following packages will be upgraded: apt apt-utils base-files base-passwd bash bash-completion binutils binutils-common binutils-powerpc64le-linux-gnu bsdextrautils bsdutils coreutils cpp cpp-13 debianutils diffutils dpkg dpkg-dev fakeroot g++ g++-13 gcc gcc-13 gcc-13-base grep init init-system-helpers krb5-locales libapparmor1 libapt-pkg6.0 libargon2-1 libasan8 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdebconfclient0 libdpkg-perl libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error-l10n libgpg-error0 libgssapi-krb5-2 libidn2-0 libitm1 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 liblsan0 liblzma5 libmount1 libncursesw6 libnsl-dev libnsl2 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libperl5.36 libpng16-16 libproc2-0 libquadmath0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1 libsmartcols1 libsqlite3-0 libssl3 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libtsan2 libubsan1 libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev login lto-disabled-list mawk mount ncurses-base ncurses-bin openssl optipng passwd perl perl-base perl-modules-5.36 pinentry-curses procps readline-common systemd systemd-dev systemd-sysv sysvinit-utils tar ubuntu-keyring util-linux uuid-runtime xz-utils zlib1g 133 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 108 MB of archives. After this operation, 8879 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu noble/main ppc64el libnsl-dev ppc64el 1.3.0-3 [79.2 kB] Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el libc6-dev ppc64el 2.38-3ubuntu1 [2083 kB] Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el libc-dev-bin ppc64el 2.38-3ubuntu1 [21.0 kB] Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el libtirpc-common all 1.3.4+ds-1 [7920 B] Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el libtirpc-dev ppc64el 1.3.4+ds-1 [222 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el libgssapi-krb5-2 ppc64el 1.20.1-5build1 [180 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el libkrb5-3 ppc64el 1.20.1-5build1 [426 kB] Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el libk5crypto3 ppc64el 1.20.1-5build1 [106 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el libkrb5support0 ppc64el 1.20.1-5build1 [37.5 kB] Get:10 http://ftpmaster.internal/ubuntu noble/main ppc64el libssl3 ppc64el 3.0.10-1ubuntu3 [2130 kB] Get:11 http://ftpmaster.internal/ubuntu noble/main ppc64el libtirpc3 ppc64el 1.3.4+ds-1 [98.9 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main ppc64el libnsl2 ppc64el 1.3.0-3 [47.3 kB] Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-libc-dev ppc64el 6.6.0-14.14 [1569 kB] Get:14 http://ftpmaster.internal/ubuntu noble/main ppc64el libcc1-0 ppc64el 13.2.0-9ubuntu1 [48.7 kB] Get:15 http://ftpmaster.internal/ubuntu noble/main ppc64el libctf0 ppc64el 2.41.50.20231214-1ubuntu1 [95.4 kB] Get:16 http://ftpmaster.internal/ubuntu noble/main ppc64el libctf-nobfd0 ppc64el 2.41.50.20231214-1ubuntu1 [99.4 kB] Get:17 http://ftpmaster.internal/ubuntu noble/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.41.50.20231214-1ubuntu1 [2646 kB] Get:18 http://ftpmaster.internal/ubuntu noble/main ppc64el libbinutils ppc64el 2.41.50.20231214-1ubuntu1 [667 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main ppc64el binutils-common ppc64el 2.41.50.20231214-1ubuntu1 [230 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main ppc64el binutils ppc64el 2.41.50.20231214-1ubuntu1 [3096 B] Get:21 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc-13-base ppc64el 13.2.0-9ubuntu1 [45.2 kB] Get:22 http://ftpmaster.internal/ubuntu noble/main ppc64el libgcc-s1 ppc64el 13.2.0-9ubuntu1 [38.6 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main ppc64el libgomp1 ppc64el 13.2.0-9ubuntu1 [154 kB] Get:24 http://ftpmaster.internal/ubuntu noble/main ppc64el libitm1 ppc64el 13.2.0-9ubuntu1 [32.2 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main ppc64el libatomic1 ppc64el 13.2.0-9ubuntu1 [10.7 kB] Get:26 http://ftpmaster.internal/ubuntu noble/main ppc64el libasan8 ppc64el 13.2.0-9ubuntu1 [2837 kB] Get:27 http://ftpmaster.internal/ubuntu noble/main ppc64el liblsan0 ppc64el 13.2.0-9ubuntu1 [1233 kB] Get:28 http://ftpmaster.internal/ubuntu noble/main ppc64el libtsan2 ppc64el 13.2.0-9ubuntu1 [2656 kB] Get:29 http://ftpmaster.internal/ubuntu noble/main ppc64el libubsan1 ppc64el 13.2.0-9ubuntu1 [1134 kB] Get:30 http://ftpmaster.internal/ubuntu noble/main ppc64el libquadmath0 ppc64el 13.2.0-9ubuntu1 [156 kB] Get:31 http://ftpmaster.internal/ubuntu noble/main ppc64el g++-13 ppc64el 13.2.0-9ubuntu1 [11.2 MB] Get:32 http://ftpmaster.internal/ubuntu noble/main ppc64el libstdc++-13-dev ppc64el 13.2.0-9ubuntu1 [2441 kB] Get:33 http://ftpmaster.internal/ubuntu noble/main ppc64el libgcc-13-dev ppc64el 13.2.0-9ubuntu1 [1581 kB] Get:34 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc-13 ppc64el 13.2.0-9ubuntu1 [19.5 MB] Get:35 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp-13 ppc64el 13.2.0-9ubuntu1 [9747 kB] Get:36 http://ftpmaster.internal/ubuntu noble/main ppc64el libstdc++6 ppc64el 13.2.0-9ubuntu1 [871 kB] Get:37 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el zlib1g ppc64el 1:1.3.dfsg-3ubuntu1 [72.1 kB] Get:38 http://ftpmaster.internal/ubuntu noble/main ppc64el libsframe1 ppc64el 2.41.50.20231214-1ubuntu1 [15.0 kB] Get:39 http://ftpmaster.internal/ubuntu noble/main ppc64el libzstd1 ppc64el 1.5.5+dfsg2-2 [390 kB] Get:40 http://ftpmaster.internal/ubuntu noble/main ppc64el libc6 ppc64el 2.38-3ubuntu1 [3245 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main ppc64el base-files ppc64el 13ubuntu5 [73.9 kB] Get:42 http://ftpmaster.internal/ubuntu noble/main ppc64el debianutils ppc64el 5.14 [89.5 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main ppc64el bash ppc64el 5.2.21-2ubuntu1 [959 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main ppc64el bsdutils ppc64el 1:2.39.2-6ubuntu1 [97.0 kB] Get:45 http://ftpmaster.internal/ubuntu noble/main ppc64el coreutils ppc64el 9.4-2ubuntu1 [1535 kB] Get:46 http://ftpmaster.internal/ubuntu noble/main ppc64el diffutils ppc64el 1:3.10-1 [200 kB] Get:47 http://ftpmaster.internal/ubuntu noble/main ppc64el liblzma5 ppc64el 5.4.5-0.1 [158 kB] Get:48 http://ftpmaster.internal/ubuntu noble/main ppc64el libapparmor1 ppc64el 4.0.0~alpha2-0ubuntu7 [53.6 kB] Get:49 http://ftpmaster.internal/ubuntu noble/main ppc64el libaudit-common all 1:3.1.2-1 [5512 B] Get:50 http://ftpmaster.internal/ubuntu noble/main ppc64el libcap-ng0 ppc64el 0.8.3-3 [16.1 kB] Get:51 http://ftpmaster.internal/ubuntu noble/main ppc64el libaudit1 ppc64el 1:3.1.2-1 [51.6 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main ppc64el libblkid1 ppc64el 2.39.2-6ubuntu1 [152 kB] Get:53 http://ftpmaster.internal/ubuntu noble/main ppc64el libkmod2 ppc64el 30+20230601-2ubuntu1 [62.4 kB] Get:54 http://ftpmaster.internal/ubuntu noble/main ppc64el libpcre2-8-0 ppc64el 10.42-4ubuntu1 [263 kB] Get:55 http://ftpmaster.internal/ubuntu noble/main ppc64el libselinux1 ppc64el 3.5-1build2 [97.3 kB] Get:56 http://ftpmaster.internal/ubuntu noble/main ppc64el libmount1 ppc64el 2.39.2-6ubuntu1 [166 kB] Get:57 http://ftpmaster.internal/ubuntu noble/main ppc64el libpam0g ppc64el 1.5.2-9.1ubuntu1 [72.5 kB] Get:58 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libseccomp2 ppc64el 2.5.4-2ubuntu1 [61.9 kB] Get:59 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el systemd-sysv ppc64el 255-1ubuntu1 [11.7 kB] Get:60 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el systemd-dev all 255-1ubuntu1 [98.5 kB] Get:61 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el systemd ppc64el 255-1ubuntu1 [3808 kB] Get:62 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsystemd-shared ppc64el 255-1ubuntu1 [2335 kB] Get:63 http://ftpmaster.internal/ubuntu noble/main ppc64el libargon2-1 ppc64el 0~20190702+dfsg-4 [27.1 kB] Get:64 http://ftpmaster.internal/ubuntu noble/main ppc64el libuuid1 ppc64el 2.39.2-6ubuntu1 [37.8 kB] Get:65 http://ftpmaster.internal/ubuntu noble/main ppc64el libcryptsetup12 ppc64el 2:2.6.1-5ubuntu1 [347 kB] Get:66 http://ftpmaster.internal/ubuntu noble/main ppc64el libfdisk1 ppc64el 2.39.2-6ubuntu1 [168 kB] Get:67 http://ftpmaster.internal/ubuntu noble/main ppc64el mount ppc64el 2.39.2-6ubuntu1 [124 kB] Get:68 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsystemd0 ppc64el 255-1ubuntu1 [519 kB] Get:69 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libudev1 ppc64el 255-1ubuntu1 [195 kB] Get:70 http://ftpmaster.internal/ubuntu noble/main ppc64el libxxhash0 ppc64el 0.8.2-2 [30.4 kB] Get:71 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libapt-pkg6.0 ppc64el 2.7.7 [1005 kB] Get:72 http://ftpmaster.internal/ubuntu noble/main ppc64el tar ppc64el 1.34+dfsg-1.2ubuntu2 [355 kB] Get:73 http://ftpmaster.internal/ubuntu noble/main ppc64el dpkg ppc64el 1.22.1ubuntu5 [1467 kB] Get:74 http://ftpmaster.internal/ubuntu noble/main ppc64el grep ppc64el 3.11-3 [172 kB] Get:75 http://ftpmaster.internal/ubuntu noble/main ppc64el login ppc64el 1:4.13+dfsg1-3ubuntu1 [204 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main ppc64el ncurses-bin ppc64el 6.4+20231209-1 [200 kB] Get:77 http://ftpmaster.internal/ubuntu noble/main ppc64el libperl5.36 ppc64el 5.36.0-10ubuntu1 [4849 kB] Get:78 http://ftpmaster.internal/ubuntu noble/main ppc64el perl ppc64el 5.36.0-10ubuntu1 [235 kB] Get:79 http://ftpmaster.internal/ubuntu noble/main ppc64el perl-base ppc64el 5.36.0-10ubuntu1 [1847 kB] Get:80 http://ftpmaster.internal/ubuntu noble/main ppc64el perl-modules-5.36 all 5.36.0-10ubuntu1 [2984 kB] Get:81 http://ftpmaster.internal/ubuntu noble/main ppc64el libdb5.3 ppc64el 5.3.28+dfsg2-4 [853 kB] Get:82 http://ftpmaster.internal/ubuntu noble/main ppc64el libgdbm6 ppc64el 1.23-5 [40.6 kB] Get:83 http://ftpmaster.internal/ubuntu noble/main ppc64el libgdbm-compat4 ppc64el 1.23-5 [6620 B] Get:84 http://ftpmaster.internal/ubuntu noble/main ppc64el util-linux ppc64el 2.39.2-6ubuntu1 [1184 kB] Get:85 http://ftpmaster.internal/ubuntu noble/main ppc64el libdebconfclient0 ppc64el 0.271ubuntu1 [11.1 kB] Get:86 http://ftpmaster.internal/ubuntu noble/main ppc64el base-passwd ppc64el 3.6.3 [52.5 kB] Get:87 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el init-system-helpers all 1.66ubuntu1 [39.4 kB] Get:88 http://ftpmaster.internal/ubuntu noble/main ppc64el libc-bin ppc64el 2.38-3ubuntu1 [745 kB] Get:89 http://ftpmaster.internal/ubuntu noble/main ppc64el ncurses-base all 6.4+20231209-1 [25.2 kB] Get:90 http://ftpmaster.internal/ubuntu noble/main ppc64el sysvinit-utils ppc64el 3.08-3ubuntu1 [35.2 kB] Get:91 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el apt ppc64el 2.7.7 [1392 kB] Get:92 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el apt-utils ppc64el 2.7.7 [224 kB] Get:93 http://ftpmaster.internal/ubuntu noble/main ppc64el ubuntu-keyring all 2023.11.28.1 [11.1 kB] Get:94 http://ftpmaster.internal/ubuntu noble/main ppc64el libunistring5 ppc64el 1.1-2 [556 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main ppc64el libidn2-0 ppc64el 2.3.4-1build1 [67.8 kB] Get:96 http://ftpmaster.internal/ubuntu noble/main ppc64el libffi8 ppc64el 3.4.4-2 [27.3 kB] Get:97 http://ftpmaster.internal/ubuntu noble/main ppc64el libp11-kit0 ppc64el 0.25.3-2ubuntu2 [304 kB] Get:98 http://ftpmaster.internal/ubuntu noble/main ppc64el libgnutls30 ppc64el 3.8.1-4ubuntu6 [1043 kB] Get:99 http://ftpmaster.internal/ubuntu noble/main ppc64el libpam-modules-bin ppc64el 1.5.2-9.1ubuntu1 [52.3 kB] Get:100 http://ftpmaster.internal/ubuntu noble/main ppc64el libpam-modules ppc64el 1.5.2-9.1ubuntu1 [325 kB] Get:101 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el init ppc64el 1.66ubuntu1 [6190 B] Get:102 http://ftpmaster.internal/ubuntu noble/main ppc64el libsmartcols1 ppc64el 2.39.2-6ubuntu1 [77.1 kB] Get:103 http://ftpmaster.internal/ubuntu noble/main ppc64el uuid-runtime ppc64el 2.39.2-6ubuntu1 [33.4 kB] Get:104 http://ftpmaster.internal/ubuntu noble/main ppc64el libgpg-error-l10n all 1.47-3build1 [8024 B] Get:105 http://ftpmaster.internal/ubuntu noble/main ppc64el libgpg-error0 ppc64el 1.47-3build1 [87.6 kB] Get:106 http://ftpmaster.internal/ubuntu noble/main ppc64el libpam-runtime all 1.5.2-9.1ubuntu1 [41.5 kB] Get:107 http://ftpmaster.internal/ubuntu noble/main ppc64el libsemanage-common all 3.5-1build1 [9982 B] Get:108 http://ftpmaster.internal/ubuntu noble/main ppc64el libsepol2 ppc64el 3.5-2 [386 kB] Get:109 http://ftpmaster.internal/ubuntu noble/main ppc64el libsemanage2 ppc64el 3.5-1build1 [113 kB] Get:110 http://ftpmaster.internal/ubuntu noble/main ppc64el libncursesw6 ppc64el 6.4+20231209-1 [182 kB] Get:111 http://ftpmaster.internal/ubuntu noble/main ppc64el libtinfo6 ppc64el 6.4+20231209-1 [130 kB] Get:112 http://ftpmaster.internal/ubuntu noble/main ppc64el passwd ppc64el 1:4.13+dfsg1-3ubuntu1 [875 kB] Get:113 http://ftpmaster.internal/ubuntu noble/main ppc64el libproc2-0 ppc64el 2:4.0.4-2ubuntu1 [66.6 kB] Get:114 http://ftpmaster.internal/ubuntu noble/main ppc64el mawk ppc64el 1.3.4.20231126-1 [137 kB] Get:115 http://ftpmaster.internal/ubuntu noble/main ppc64el procps ppc64el 2:4.0.4-2ubuntu1 [733 kB] Get:116 http://ftpmaster.internal/ubuntu noble/main ppc64el krb5-locales all 1.20.1-5build1 [13.7 kB] Get:117 http://ftpmaster.internal/ubuntu noble/main ppc64el readline-common all 8.2-3 [56.2 kB] Get:118 http://ftpmaster.internal/ubuntu noble/main ppc64el libreadline8 ppc64el 8.2-3 [177 kB] Get:119 http://ftpmaster.internal/ubuntu noble/main ppc64el libsqlite3-0 ppc64el 3.44.2-1 [788 kB] Get:120 http://ftpmaster.internal/ubuntu noble/main ppc64el openssl ppc64el 3.0.10-1ubuntu3 [1208 kB] Get:121 http://ftpmaster.internal/ubuntu noble/main ppc64el bash-completion all 1:2.11-8 [180 kB] Get:122 http://ftpmaster.internal/ubuntu noble/main ppc64el bsdextrautils ppc64el 2.39.2-6ubuntu1 [78.2 kB] Get:123 http://ftpmaster.internal/ubuntu noble/main ppc64el libpng16-16 ppc64el 1.6.40-2 [239 kB] Get:124 http://ftpmaster.internal/ubuntu noble/main ppc64el xz-utils ppc64el 5.4.5-0.1 [275 kB] Get:125 http://ftpmaster.internal/ubuntu noble/main ppc64el g++ ppc64el 4:13.2.0-2ubuntu1 [1110 B] Get:126 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc ppc64el 4:13.2.0-2ubuntu1 [5212 B] Get:127 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp ppc64el 4:13.2.0-2ubuntu1 [29.0 kB] Get:128 http://ftpmaster.internal/ubuntu noble/main ppc64el dpkg-dev all 1.22.1ubuntu5 [1147 kB] Get:129 http://ftpmaster.internal/ubuntu noble/main ppc64el libdpkg-perl all 1.22.1ubuntu5 [286 kB] Get:130 http://ftpmaster.internal/ubuntu noble/main ppc64el lto-disabled-list all 44 [12.4 kB] Get:131 http://ftpmaster.internal/ubuntu noble/main ppc64el libfakeroot ppc64el 1.32.2-1 [34.0 kB] Get:132 http://ftpmaster.internal/ubuntu noble/main ppc64el fakeroot ppc64el 1.32.2-1 [69.0 kB] Get:133 http://ftpmaster.internal/ubuntu noble/main ppc64el optipng ppc64el 0.7.7-3 [90.2 kB] Get:134 http://ftpmaster.internal/ubuntu noble/main ppc64el pinentry-curses ppc64el 1.2.1-3ubuntu1 [38.2 kB] Preconfiguring packages ... 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Setting up perl (5.36.0-10ubuntu1) ... Setting up libtirpc-dev:ppc64el (1.3.4+ds-1) ... Setting up gcc-13 (13.2.0-9ubuntu1) ... Setting up libdpkg-perl (1.22.1ubuntu5) ... Setting up libnsl2:ppc64el (1.3.0-3) ... Setting up gcc (4:13.2.0-2ubuntu1) ... Setting up dpkg-dev (1.22.1ubuntu5) ... Setting up libnsl-dev:ppc64el (1.3.0-3) ... Setting up libc6-dev:ppc64el (2.38-3ubuntu1) ... Setting up libstdc++-13-dev:ppc64el (13.2.0-9ubuntu1) ... Setting up g++-13 (13.2.0-9ubuntu1) ... Setting up g++ (4:13.2.0-2ubuntu1) ... Processing triggers for libc-bin (2.38-3ubuntu1) ... Processing triggers for debianutils (5.14) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-27575133 ppc64el noble-proposed -c chroot:build-PACKAGEBUILD-27575133 --arch=ppc64el --dist=noble-proposed --nolog r-base_4.3.2-1build1.dsc Initiating build PACKAGEBUILD-27575133 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-169-generic #187-Ubuntu SMP Thu Nov 23 14:52:15 UTC 2023 ppc64le sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-ppc64el-017.buildd +==============================================================================+ | r-base 4.3.2-1build1 (ppc64el) Tue, 19 Dec 2023 09:44:16 +0000 | +==============================================================================+ Package: r-base Version: 4.3.2-1build1 Source Version: 4.3.2-1build1 Distribution: noble-proposed Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-27575133/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/r-base-citJr5/resolver-DpxHLe' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-base_4.3.2-1build1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/r-base-citJr5/r-base-4.3.2' with '<>' I: NOTICE: Log filtering will replace 'build/r-base-citJr5' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: gcc (>= 4:4.9.2-2), g++ (>= 4:4.9.2-2), gfortran (>= 4:4.9.2-2), libblas-dev, liblapack-dev, tcl8.6-dev, tk8.6-dev, bison, groff-base, libncurses-dev, libreadline-dev, debhelper-compat (= 12), texinfo, libbz2-dev, liblzma-dev, libpcre2-dev, libcurl4-openssl-dev | libcurl4-dev, xdg-utils, zlib1g-dev, libpng-dev, libjpeg-dev, libx11-dev, libxt-dev, x11proto-core-dev, libpango1.0-dev, libcairo2-dev, libtiff-dev, xvfb, xauth, xfonts-base, texlive-base, texlive-latex-base, texlive-plain-generic, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, default-jdk | openjdk-10-jdk, mpack, bash-completion, build-essential, fakeroot Filtered Build-Depends: gcc (>= 4:4.9.2-2), g++ (>= 4:4.9.2-2), gfortran (>= 4:4.9.2-2), libblas-dev, liblapack-dev, tcl8.6-dev, tk8.6-dev, bison, groff-base, libncurses-dev, libreadline-dev, debhelper-compat (= 12), texinfo, libbz2-dev, liblzma-dev, libpcre2-dev, libcurl4-openssl-dev | libcurl4-dev, xdg-utils, zlib1g-dev, libpng-dev, libjpeg-dev, libx11-dev, libxt-dev, x11proto-core-dev, libpango1.0-dev, libcairo2-dev, libtiff-dev, xvfb, xauth, xfonts-base, texlive-base, texlive-latex-base, texlive-plain-generic, texlive-fonts-recommended, texlive-fonts-extra, texlive-extra-utils, texlive-latex-recommended, texlive-latex-extra, default-jdk | openjdk-10-jdk, mpack, bash-completion, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [669 B] Get:5 copy:/<>/apt_archive ./ Packages [721 B] Fetched 2353 B in 0s (197 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils debconf-i18n krb5-locales libgpg-error-l10n libgpm2 libip4tc2 liblocale-gettext-perl libnss-nis libnss-nisplus libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libunistring2 psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: adwaita-icon-theme at-spi2-common autoconf automake autopoint autotools-dev bison ca-certificates-java debhelper debugedit default-jdk default-jdk-headless default-jre default-jre-headless dh-autoreconf dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lmodern gettext gettext-base gfortran gfortran-13 gir1.2-freedesktop gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 gir1.2-pango-1.0 groff-base gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme icu-devtools intltool-debian java-common libapache-pom-java libarchive-zip-perl libasound2 libasound2-data libatk1.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libblas-dev libblas3 libblkid-dev libbrotli-dev libbrotli1 libbsd0 libbz2-dev libcairo-gobject2 libcairo-script-interpreter2 libcairo2 libcairo2-dev libcommons-logging-java libcommons-parent-java libcups2 libcurl4 libcurl4-openssl-dev libdatrie-dev libdatrie1 libdbus-1-3 libdebhelper-perl libdeflate-dev libdeflate0 libdrm-amdgpu1 libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libdw1 libedit2 libelf1 libexpat1 libexpat1-dev libffi-dev libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontbox-java libfontconfig-dev libfontconfig1 libfontconfig1-dev libfontenc1 libfreetype-dev libfreetype6 libfribidi-dev libfribidi0 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran-13-dev libgfortran5 libgif7 libgirepository-1.0-1 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libgraphite2-dev libgtk2.0-0 libgtk2.0-common libharfbuzz-cairo0 libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz-subset0 libharfbuzz0b libice-dev libice6 libicu-dev libicu72 libicu74 libjbig-dev libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-jquery libkpathsea6 liblapack-dev liblapack3 liblcms2-2 libldap2 liblerc-dev liblerc4 libllvm17 liblzma-dev liblzo2-2 libmagic-mgc libmagic1 libmime-charset-perl libmount-dev libncurses-dev libncurses6 libnghttp2-14 libnspr4 libnss3 libpango-1.0-0 libpango1.0-dev libpangocairo-1.0-0 libpangoft2-1.0-0 libpangoxft-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcsclite1 libpdfbox-java libpipeline1 libpixman-1-0 libpixman-1-dev libpkgconf3 libpng-dev libpotrace0 libpsl5 libptexenc1 libpthread-stubs0-dev libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libreadline-dev librtmp1 libsasl2-2 libsasl2-modules-db libselinux1-dev libsensors-config libsensors5 libsepol-dev libsharpyuv-dev libsharpyuv0 libsm-dev libsm6 libsombok3 libssh-4 libsub-override-perl libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libtext-unidecode-perl libthai-data libthai-dev libthai0 libtiff-dev libtiff6 libtiffxx6 libtk8.6 libtool libuchardet0 libunicode-linebreak-perl libunwind8 libvulkan1 libwebp-dev libwebp7 libwebpdecoder3 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-render0-dev libxcb-shm0 libxcb-shm0-dev libxcb-sync1 libxcb-xfixes0 libxcb1 libxcb1-dev libxcomposite1 libxcursor1 libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxfont2 libxft-dev libxft2 libxi6 libxinerama1 libxkbfile1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml2 libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender-dev libxrender1 libxshmfence1 libxss-dev libxss1 libxt-dev libxt6 libxtst6 libxxf86vm1 libyaml-tiny-perl libzstd-dev libzzip-0-13 lmodern m4 man-db media-types mpack netbase openjdk-17-jdk openjdk-17-jdk-headless openjdk-17-jre openjdk-17-jre-headless pango1.0-tools pkg-config pkgconf pkgconf-bin po-debconf preview-latex-style python3 python3-distutils python3-lib2to3 python3-minimal python3.11 python3.11-minimal shared-mime-info t1utils tcl8.6 tcl8.6-dev tex-common texinfo texinfo-lib texlive-base texlive-binaries texlive-extra-utils texlive-fonts-extra texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-luatex texlive-pictures texlive-plain-generic tk8.6 tk8.6-dev ubuntu-mono ucf uuid-dev x11-common x11-xkb-utils x11proto-core-dev x11proto-dev xauth xdg-utils xfonts-base xfonts-encodings xfonts-utils xkb-data xorg-sgml-doctools xserver-common xtrans-dev xvfb zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc bison-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc gfortran-13-doc libcoarrays-dev groff libasound2-plugins alsa-utils liblapack-doc libcairo2-doc libavalon-framework-java libcommons-logging-java-doc libexcalibur-logkit-java liblog4j1.2-java cups-common libcurl4-doc libidn-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev libssl-dev libdatrie-doc freetype2-doc low-memory-monitor libgirepository1.0-dev libglib2.0-doc libgdk-pixbuf2.0-bin libxml2-utils libgraphite2-utils gvfs libice-doc icu-doc liblcms2-utils liblzma-doc libencode-eucjpascii-perl libencode-hanextra-perl libpod2-base-perl ncurses-doc libpango1.0-doc pcscd readline-doc lm-sensors libsm-doc libthai-doc libtool-doc gcj-jdk libx11-doc libxcb-doc libxext-doc libxt-doc m4-doc apparmor less www-browser default-mta | mail-transport-agent inews openjdk-17-demo openjdk-17-source visualvm libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic graphicsmagick libmail-box-perl python3-doc python3-tk python3-venv python3.11-venv python3.11-doc binfmt-support tcl-tclreadline tcl8.6-doc ghostscript gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec hintview chktex dvidvi dvipng fragmaster lacheck latexdiff latexmk purifyeps xindy texlive-fonts-extra-doc texlive-fonts-recommended-doc texlive-latex-base-doc wp2latex python3-pygments icc-profiles texlive-latex-extra-doc texlive-science texlive-latex-recommended-doc texlive-pstricks dot2tex prerex texlive-pictures-doc vprerex tk8.6-doc Recommended packages: librsvg2-common curl | wget | lynx alsa-ucm-conf alsa-topology-conf bzip2-doc dbus libarchive-cpio-perl libgdk-pixbuf2.0-bin libgl1-amber-dri xdg-user-dirs libgail-common libgtk2.0-bin javascript-common libldap-common libpng-tools publicsuffix libsasl2-modules libltdl-dev mesa-vulkan-drivers | vulkan-icd libwww-perl libxml-sax-expat-perl libatk-wrapper-java-jni fonts-dejavu-extra libmail-sendmail-perl dvisvgm ghostscript liblog-log4perl-perl ruby cm-super fonts-adf-accanthis fonts-adf-berenis fonts-adf-gillius fonts-adf-universalis fonts-cabin fonts-cantarell fonts-clear-sans fonts-comfortaa fonts-comic-neue fonts-croscore fonts-crosextra-caladea fonts-crosextra-carlito fonts-ebgaramond-extra fonts-font-awesome fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga fonts-gfs-solomos fonts-go fonts-inter fonts-lato fonts-linuxlibertine fonts-lobstertwo fonts-noto-color-emoji fonts-noto-core fonts-noto-mono fonts-oflb-asana-math fonts-open-sans fonts-paratype fonts-roboto-slab fonts-roboto-unhinted fonts-sil-andika fonts-sil-charis fonts-sil-gentium fonts-sil-gentium-basic fonts-sil-gentiumplus fonts-sil-gentiumplus-compact fonts-stix texlive-fonts-extra-links tex-gyre tipa libspreadsheet-parseexcel-perl tk libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: adwaita-icon-theme at-spi2-common autoconf automake autopoint autotools-dev bison ca-certificates-java debhelper debugedit default-jdk default-jdk-headless default-jre default-jre-headless dh-autoreconf dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lmodern gettext gettext-base gfortran gfortran-13 gir1.2-freedesktop gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 gir1.2-pango-1.0 groff-base gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme icu-devtools intltool-debian java-common libapache-pom-java libarchive-zip-perl libasound2 libasound2-data libatk1.0-0 libavahi-client3 libavahi-common-data libavahi-common3 libblas-dev libblas3 libblkid-dev libbrotli-dev libbrotli1 libbsd0 libbz2-dev libcairo-gobject2 libcairo-script-interpreter2 libcairo2 libcairo2-dev libcommons-logging-java libcommons-parent-java libcups2 libcurl4 libcurl4-openssl-dev libdatrie-dev libdatrie1 libdbus-1-3 libdebhelper-perl libdeflate-dev libdeflate0 libdrm-amdgpu1 libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libdw1 libedit2 libelf1 libexpat1 libexpat1-dev libffi-dev libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontbox-java libfontconfig-dev libfontconfig1 libfontconfig1-dev libfontenc1 libfreetype-dev libfreetype6 libfribidi-dev libfribidi0 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran-13-dev libgfortran5 libgif7 libgirepository-1.0-1 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libgraphite2-dev libgtk2.0-0 libgtk2.0-common libharfbuzz-cairo0 libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz-subset0 libharfbuzz0b libice-dev libice6 libicu-dev libicu72 libicu74 libjbig-dev libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-jquery libkpathsea6 liblapack-dev liblapack3 liblcms2-2 libldap2 liblerc-dev liblerc4 libllvm17 liblzma-dev liblzo2-2 libmagic-mgc libmagic1 libmime-charset-perl libmount-dev libncurses-dev libncurses6 libnghttp2-14 libnspr4 libnss3 libpango-1.0-0 libpango1.0-dev libpangocairo-1.0-0 libpangoft2-1.0-0 libpangoxft-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcsclite1 libpdfbox-java libpipeline1 libpixman-1-0 libpixman-1-dev libpkgconf3 libpng-dev libpotrace0 libpsl5 libptexenc1 libpthread-stubs0-dev libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libreadline-dev librtmp1 libsasl2-2 libsasl2-modules-db libselinux1-dev libsensors-config libsensors5 libsepol-dev libsharpyuv-dev libsharpyuv0 libsm-dev libsm6 libsombok3 libssh-4 libsub-override-perl libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libtext-unidecode-perl libthai-data libthai-dev libthai0 libtiff-dev libtiff6 libtiffxx6 libtk8.6 libtool libuchardet0 libunicode-linebreak-perl libunwind8 libvulkan1 libwebp-dev libwebp7 libwebpdecoder3 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-render0-dev libxcb-shm0 libxcb-shm0-dev libxcb-sync1 libxcb-xfixes0 libxcb1 libxcb1-dev libxcomposite1 libxcursor1 libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxfont2 libxft-dev libxft2 libxi6 libxinerama1 libxkbfile1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml2 libxmu6 libxmuu1 libxpm4 libxrandr2 libxrender-dev libxrender1 libxshmfence1 libxss-dev libxss1 libxt-dev libxt6 libxtst6 libxxf86vm1 libyaml-tiny-perl libzstd-dev libzzip-0-13 lmodern m4 man-db media-types mpack netbase openjdk-17-jdk openjdk-17-jdk-headless openjdk-17-jre openjdk-17-jre-headless pango1.0-tools pkg-config pkgconf pkgconf-bin po-debconf preview-latex-style python3 python3-distutils python3-lib2to3 python3-minimal python3.11 python3.11-minimal sbuild-build-depends-main-dummy shared-mime-info t1utils tcl8.6 tcl8.6-dev tex-common texinfo texinfo-lib texlive-base texlive-binaries texlive-extra-utils texlive-fonts-extra texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-luatex texlive-pictures texlive-plain-generic tk8.6 tk8.6-dev ubuntu-mono ucf uuid-dev x11-common x11-xkb-utils x11proto-core-dev x11proto-dev xauth xdg-utils xfonts-base xfonts-encodings xfonts-utils xkb-data xorg-sgml-doctools xserver-common xtrans-dev xvfb zlib1g-dev 0 upgraded, 328 newly installed, 0 to remove and 0 not upgraded. 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Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [942 B] Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el libpython3.11-minimal ppc64el 3.11.7-2 [840 kB] Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el libexpat1 ppc64el 2.5.0-2 [96.2 kB] Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el python3.11-minimal ppc64el 3.11.7-2 [2332 kB] Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-minimal ppc64el 3.11.4-5ubuntu1 [26.9 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el media-types all 10.1.0 [27.5 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el netbase all 6.4 [13.1 kB] Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el libpython3.11-stdlib ppc64el 3.11.7-2 [1972 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el python3.11 ppc64el 3.11.7-2 [583 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpython3-stdlib ppc64el 3.11.4-5ubuntu1 [9560 B] 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[11.2 MB] Get:21 http://ftpmaster.internal/ubuntu noble/main ppc64el libxml2 ppc64el 2.9.14+dfsg-1.3build2 [826 kB] Get:22 http://ftpmaster.internal/ubuntu noble/main ppc64el shared-mime-info ppc64el 2.4-1 [474 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main ppc64el ucf all 3.0043+nmu1 [56.5 kB] Get:24 http://ftpmaster.internal/ubuntu noble/main ppc64el xkb-data all 2.38-2 [392 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main ppc64el libmagic-mgc ppc64el 1:5.45-2 [307 kB] Get:26 http://ftpmaster.internal/ubuntu noble/main ppc64el libmagic1 ppc64el 1:5.45-2 [106 kB] Get:27 http://ftpmaster.internal/ubuntu noble/main ppc64el file ppc64el 1:5.45-2 [22.6 kB] Get:28 http://ftpmaster.internal/ubuntu noble/main ppc64el gettext-base ppc64el 0.21-14 [42.5 kB] Get:29 http://ftpmaster.internal/ubuntu noble/main ppc64el libuchardet0 ppc64el 0.0.8-1 [78.7 kB] Get:30 http://ftpmaster.internal/ubuntu noble/main ppc64el groff-base ppc64el 1.23.0-3 [1108 kB] Get:31 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Get:71 http://ftpmaster.internal/ubuntu noble/main ppc64el libtool all 2.4.7-7 [166 kB] Get:72 http://ftpmaster.internal/ubuntu noble/main ppc64el dh-autoreconf all 20 [16.1 kB] Get:73 http://ftpmaster.internal/ubuntu noble/main ppc64el libarchive-zip-perl all 1.68-1 [90.2 kB] Get:74 http://ftpmaster.internal/ubuntu noble/main ppc64el libsub-override-perl all 0.10-1 [10.0 kB] Get:75 http://ftpmaster.internal/ubuntu noble/main ppc64el libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main ppc64el dh-strip-nondeterminism all 1.13.1-1 [5362 B] Get:77 http://ftpmaster.internal/ubuntu noble/main ppc64el libdw1 ppc64el 0.190-1 [294 kB] Get:78 http://ftpmaster.internal/ubuntu noble/main ppc64el debugedit ppc64el 1:5.0-5 [51.1 kB] Get:79 http://ftpmaster.internal/ubuntu noble/main ppc64el dwz ppc64el 0.15-1 [139 kB] Get:80 http://ftpmaster.internal/ubuntu noble/main ppc64el gettext ppc64el 0.21-14 [974 kB] Get:81 http://ftpmaster.internal/ubuntu noble/main ppc64el intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:82 http://ftpmaster.internal/ubuntu noble/main ppc64el po-debconf all 1.0.21+nmu1 [233 kB] Get:83 http://ftpmaster.internal/ubuntu noble/main ppc64el debhelper all 13.11.8ubuntu1 [940 kB] Get:84 http://ftpmaster.internal/ubuntu noble/main ppc64el java-common all 0.75 [6718 B] Get:85 http://ftpmaster.internal/ubuntu noble/main ppc64el libavahi-common-data ppc64el 0.8-13ubuntu2 [29.5 kB] Get:86 http://ftpmaster.internal/ubuntu noble/main ppc64el libavahi-common3 ppc64el 0.8-13ubuntu2 [25.8 kB] Get:87 http://ftpmaster.internal/ubuntu noble/main ppc64el libavahi-client3 ppc64el 0.8-13ubuntu2 [30.6 kB] Get:88 http://ftpmaster.internal/ubuntu noble/main ppc64el libcups2 ppc64el 2.4.6-0ubuntu3 [344 kB] Get:89 http://ftpmaster.internal/ubuntu noble/main ppc64el liblcms2-2 ppc64el 2.14-2 [243 kB] Get:90 http://ftpmaster.internal/ubuntu noble/main ppc64el libbrotli1 ppc64el 1.1.0-2 [408 kB] Get:91 http://ftpmaster.internal/ubuntu noble/main ppc64el libfreetype6 ppc64el 2.13.2+dfsg-1 [535 kB] Get:92 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB] Get:93 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB] Get:94 http://ftpmaster.internal/ubuntu noble/main ppc64el fontconfig-config ppc64el 2.14.2-6ubuntu1 [36.0 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main ppc64el libfontconfig1 ppc64el 2.14.2-6ubuntu1 [184 kB] Get:96 http://ftpmaster.internal/ubuntu noble/main ppc64el libnspr4 ppc64el 2:4.35-1.1 [132 kB] Get:97 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libnss3 ppc64el 2:3.96.1-1 [1762 kB] Get:98 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libasound2-data all 1.2.10-3 [20.7 kB] Get:99 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libasound2 ppc64el 1.2.10-3 [496 kB] Get:100 http://ftpmaster.internal/ubuntu noble/main ppc64el libgraphite2-3 ppc64el 1.3.14-1build2 [85.9 kB] Get:101 http://ftpmaster.internal/ubuntu noble/main ppc64el libharfbuzz0b ppc64el 8.0.1-1 [553 kB] Get:102 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpcsclite1 ppc64el 2.0.1-1 [28.2 kB] Get:103 http://ftpmaster.internal/ubuntu noble/main ppc64el openjdk-17-jre-headless ppc64el 17.0.9+9-2 [47.2 MB] Get:104 http://ftpmaster.internal/ubuntu noble/main ppc64el default-jre-headless ppc64el 2:1.17-75 [3050 B] Get:105 http://ftpmaster.internal/ubuntu noble/main ppc64el libgtk2.0-common all 2.24.33-2ubuntu2 [125 kB] Get:106 http://ftpmaster.internal/ubuntu noble/main ppc64el libatk1.0-0 ppc64el 2.50.0-1 [57.8 kB] Get:107 http://ftpmaster.internal/ubuntu noble/main ppc64el libpixman-1-0 ppc64el 0.42.2-1 [300 kB] Get:108 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-render0 ppc64el 1.15-1 [17.2 kB] Get:109 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-shm0 ppc64el 1.15-1 [5896 B] Get:110 http://ftpmaster.internal/ubuntu noble/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1 [23.3 kB] Get:111 http://ftpmaster.internal/ubuntu noble/main ppc64el libcairo2 ppc64el 1.18.0-1 [735 kB] Get:112 http://ftpmaster.internal/ubuntu noble/main ppc64el fontconfig ppc64el 2.14.2-6ubuntu1 [192 kB] Get:113 http://ftpmaster.internal/ubuntu noble/main ppc64el libthai-data all 0.1.29-1build1 [162 kB] Get:114 http://ftpmaster.internal/ubuntu noble/main ppc64el libdatrie1 ppc64el 0.2.13-2 [22.6 kB] Get:115 http://ftpmaster.internal/ubuntu noble/main ppc64el libthai0 ppc64el 0.1.29-1build1 [21.6 kB] Get:116 http://ftpmaster.internal/ubuntu noble/main ppc64el libpango-1.0-0 ppc64el 1.51.0+ds-3 [263 kB] Get:117 http://ftpmaster.internal/ubuntu noble/main ppc64el libpangoft2-1.0-0 ppc64el 1.51.0+ds-3 [48.6 kB] Get:118 http://ftpmaster.internal/ubuntu noble/main ppc64el libpangocairo-1.0-0 ppc64el 1.51.0+ds-3 [30.6 kB] Get:119 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcomposite1 ppc64el 1:0.4.5-1build2 [7400 B] Get:120 http://ftpmaster.internal/ubuntu noble/main ppc64el libxfixes3 ppc64el 1:6.0.0-2 [11.6 kB] Get:121 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcursor1 ppc64el 1:1.2.1-1 [26.9 kB] Get:122 http://ftpmaster.internal/ubuntu noble/main ppc64el libxdamage1 ppc64el 1:1.1.6-1 [6320 B] Get:123 http://ftpmaster.internal/ubuntu noble/main ppc64el libxi6 ppc64el 2:1.8-1build1 [38.1 kB] Get:124 http://ftpmaster.internal/ubuntu noble/main ppc64el libxinerama1 ppc64el 2:1.1.4-3 [7658 B] Get:125 http://ftpmaster.internal/ubuntu noble/main ppc64el libxrandr2 ppc64el 2:1.5.2-2 [22.7 kB] Get:126 http://ftpmaster.internal/ubuntu noble/main ppc64el libgtk2.0-0 ppc64el 2.24.33-2ubuntu2 [2201 kB] Get:127 http://ftpmaster.internal/ubuntu noble/main ppc64el libglvnd0 ppc64el 1.7.0-1 [84.0 kB] Get:128 http://ftpmaster.internal/ubuntu noble/main ppc64el libglapi-mesa ppc64el 23.3.0-2ubuntu3 [42.1 kB] Get:129 http://ftpmaster.internal/ubuntu noble/main ppc64el libx11-xcb1 ppc64el 2:1.8.7-1 [7866 B] Get:130 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-dri2-0 ppc64el 1.15-1 [7444 B] Get:131 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-dri3-0 ppc64el 1.15-1 [7392 B] Get:132 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-glx0 ppc64el 1.15-1 [26.2 kB] Get:133 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-present0 ppc64el 1.15-1 [5814 B] Get:134 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-randr0 ppc64el 1.15-1 [18.9 kB] Get:135 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-sync1 ppc64el 1.15-1 [9720 B] Get:136 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-xfixes0 ppc64el 1.15-1 [10.6 kB] Get:137 http://ftpmaster.internal/ubuntu noble/main ppc64el libxshmfence1 ppc64el 1.3-1build4 [5566 B] Get:138 http://ftpmaster.internal/ubuntu noble/main ppc64el libxxf86vm1 ppc64el 1:1.1.4-1build3 [11.8 kB] Get:139 http://ftpmaster.internal/ubuntu noble/main ppc64el libvulkan1 ppc64el 1.3.268.0-1 [173 kB] Get:140 http://ftpmaster.internal/ubuntu noble/main ppc64el libdrm-amdgpu1 ppc64el 2.4.117-1 [24.1 kB] Get:141 http://ftpmaster.internal/ubuntu noble/main ppc64el libdrm-nouveau2 ppc64el 2.4.117-1 [20.7 kB] Get:142 http://ftpmaster.internal/ubuntu noble/main ppc64el libdrm-radeon1 ppc64el 2.4.117-1 [29.5 kB] Get:143 http://ftpmaster.internal/ubuntu noble/main ppc64el libllvm17 ppc64el 1:17.0.6-3 [27.3 MB] Get:144 http://ftpmaster.internal/ubuntu noble/main ppc64el libsensors-config all 1:3.6.0-7ubuntu1 [5274 B] Get:145 http://ftpmaster.internal/ubuntu noble/main ppc64el libsensors5 ppc64el 1:3.6.0-7ubuntu1 [32.3 kB] Get:146 http://ftpmaster.internal/ubuntu noble/main ppc64el libgl1-mesa-dri ppc64el 23.3.0-2ubuntu3 [5732 kB] Get:147 http://ftpmaster.internal/ubuntu noble/main ppc64el libglx-mesa0 ppc64el 23.3.0-2ubuntu3 [158 kB] Get:148 http://ftpmaster.internal/ubuntu noble/main ppc64el libglx0 ppc64el 1.7.0-1 [42.1 kB] Get:149 http://ftpmaster.internal/ubuntu noble/main ppc64el libgl1 ppc64el 1.7.0-1 [108 kB] Get:150 http://ftpmaster.internal/ubuntu noble/main ppc64el libgif7 ppc64el 5.2.1-2.5 [39.6 kB] Get:151 http://ftpmaster.internal/ubuntu noble/main ppc64el x11-common all 1:7.7+23ubuntu2 [23.4 kB] Get:152 http://ftpmaster.internal/ubuntu noble/main ppc64el libxtst6 ppc64el 2:1.2.3-1.1 [15.4 kB] Get:153 http://ftpmaster.internal/ubuntu noble/main ppc64el openjdk-17-jre ppc64el 17.0.9+9-2 [223 kB] Get:154 http://ftpmaster.internal/ubuntu noble/main ppc64el default-jre ppc64el 2:1.17-75 [914 B] Get:155 http://ftpmaster.internal/ubuntu noble/main ppc64el openjdk-17-jdk-headless ppc64el 17.0.9+9-2 [70.5 MB] Get:156 http://ftpmaster.internal/ubuntu noble/main ppc64el default-jdk-headless ppc64el 2:1.17-75 [954 B] Get:157 http://ftpmaster.internal/ubuntu noble/main ppc64el openjdk-17-jdk ppc64el 17.0.9+9-2 [1493 kB] Get:158 http://ftpmaster.internal/ubuntu noble/main ppc64el default-jdk ppc64el 2:1.17-75 [916 B] Get:159 http://ftpmaster.internal/ubuntu noble/universe ppc64el fonts-lmodern all 2.005-1 [4799 kB] Get:160 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran5 ppc64el 13.2.0-9ubuntu1 [557 kB] Get:161 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran-13-dev ppc64el 13.2.0-9ubuntu1 [603 kB] Get:162 http://ftpmaster.internal/ubuntu noble/main ppc64el gfortran-13 ppc64el 13.2.0-9ubuntu1 [10.5 MB] Get:163 http://ftpmaster.internal/ubuntu noble/main ppc64el gfortran ppc64el 4:13.2.0-2ubuntu1 [1186 B] Get:164 http://ftpmaster.internal/ubuntu noble/main ppc64el libcairo-gobject2 ppc64el 1.18.0-1 [127 kB] Get:165 http://ftpmaster.internal/ubuntu noble/main ppc64el gir1.2-freedesktop ppc64el 1.78.1-5 [35.4 kB] Get:166 http://ftpmaster.internal/ubuntu noble/main ppc64el gir1.2-harfbuzz-0.0 ppc64el 8.0.1-1 [44.4 kB] Get:167 http://ftpmaster.internal/ubuntu noble/main ppc64el libxft2 ppc64el 2.3.6-1 [59.8 kB] Get:168 http://ftpmaster.internal/ubuntu noble/main ppc64el libpangoxft-1.0-0 ppc64el 1.51.0+ds-3 [22.7 kB] Get:169 http://ftpmaster.internal/ubuntu noble/main ppc64el gir1.2-pango-1.0 ppc64el 1.51.0+ds-3 [34.9 kB] Get:170 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libicu74 ppc64el 74.2-1ubuntu1 [11.3 MB] Get:171 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el icu-devtools ppc64el 74.2-1ubuntu1 [246 kB] Get:172 http://ftpmaster.internal/ubuntu noble/universe ppc64el libapache-pom-java all 29-2 [5284 B] Get:173 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas3 ppc64el 3.11.0-2build1 [221 kB] Get:174 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas-dev ppc64el 3.11.0-2build1 [297 kB] Get:175 http://ftpmaster.internal/ubuntu noble/main ppc64el libbrotli-dev ppc64el 1.1.0-2 [421 kB] Get:176 http://ftpmaster.internal/ubuntu noble/main ppc64el libbz2-dev ppc64el 1.0.8-5build1 [49.3 kB] Get:177 http://ftpmaster.internal/ubuntu noble/main ppc64el liblzo2-2 ppc64el 2.10-2build3 [84.6 kB] Get:178 http://ftpmaster.internal/ubuntu noble/main ppc64el libcairo-script-interpreter2 ppc64el 1.18.0-1 [78.3 kB] Get:179 http://ftpmaster.internal/ubuntu noble/main ppc64el libexpat1-dev ppc64el 2.5.0-2 [145 kB] Get:180 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg-3ubuntu1 [902 kB] Get:181 http://ftpmaster.internal/ubuntu noble/main ppc64el libpng-dev ppc64el 1.6.40-2 [324 kB] Get:182 http://ftpmaster.internal/ubuntu noble/main ppc64el libfreetype-dev ppc64el 2.13.2+dfsg-1 [702 kB] Get:183 http://ftpmaster.internal/ubuntu noble/main ppc64el uuid-dev ppc64el 2.39.2-6ubuntu1 [36.7 kB] Get:184 http://ftpmaster.internal/ubuntu noble/main ppc64el libpkgconf3 ppc64el 1.8.1-2 [36.9 kB] Get:185 http://ftpmaster.internal/ubuntu noble/main ppc64el pkgconf-bin ppc64el 1.8.1-2 [22.0 kB] Get:186 http://ftpmaster.internal/ubuntu noble/main ppc64el pkgconf ppc64el 1.8.1-2 [16.7 kB] Get:187 http://ftpmaster.internal/ubuntu noble/main ppc64el pkg-config ppc64el 1.8.1-2 [7170 B] Get:188 http://ftpmaster.internal/ubuntu noble/main ppc64el libfontconfig-dev ppc64el 2.14.2-6ubuntu1 [207 kB] Get:189 http://ftpmaster.internal/ubuntu noble/main ppc64el libffi-dev ppc64el 3.4.4-2 [67.1 kB] Get:190 http://ftpmaster.internal/ubuntu noble/main ppc64el libglib2.0-bin ppc64el 2.78.3-1 [105 kB] Get:191 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-lib2to3 all 3.11.5-1 [79.0 kB] Get:192 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-distutils all 3.11.5-1 [131 kB] Get:193 http://ftpmaster.internal/ubuntu noble/main ppc64el libglib2.0-dev-bin ppc64el 2.78.3-1 [134 kB] Get:194 http://ftpmaster.internal/ubuntu noble/main ppc64el libblkid-dev ppc64el 2.39.2-6ubuntu1 [255 kB] Get:195 http://ftpmaster.internal/ubuntu noble/main ppc64el libsepol-dev ppc64el 3.5-2 [471 kB] Get:196 http://ftpmaster.internal/ubuntu noble/main ppc64el libpcre2-16-0 ppc64el 10.42-4ubuntu1 [245 kB] Get:197 http://ftpmaster.internal/ubuntu noble/main ppc64el libpcre2-32-0 ppc64el 10.42-4ubuntu1 [228 kB] Get:198 http://ftpmaster.internal/ubuntu noble/main ppc64el libpcre2-posix3 ppc64el 10.42-4ubuntu1 [7016 B] Get:199 http://ftpmaster.internal/ubuntu noble/main ppc64el libpcre2-dev ppc64el 10.42-4ubuntu1 [794 kB] Get:200 http://ftpmaster.internal/ubuntu noble/main ppc64el libselinux1-dev ppc64el 3.5-1build2 [190 kB] Get:201 http://ftpmaster.internal/ubuntu noble/main ppc64el libmount-dev ppc64el 2.39.2-6ubuntu1 [14.9 kB] Get:202 http://ftpmaster.internal/ubuntu noble/main ppc64el libglib2.0-dev ppc64el 2.78.3-1 [2119 kB] Get:203 http://ftpmaster.internal/ubuntu noble/main ppc64el libpixman-1-dev ppc64el 0.42.2-1 [333 kB] Get:204 http://ftpmaster.internal/ubuntu noble/main ppc64el libice6 ppc64el 2:1.0.10-1build2 [49.3 kB] Get:205 http://ftpmaster.internal/ubuntu noble/main ppc64el libsm6 ppc64el 2:1.2.3-1build2 [18.5 kB] Get:206 http://ftpmaster.internal/ubuntu noble/main ppc64el xorg-sgml-doctools all 1:1.11-1.1 [10.9 kB] Get:207 http://ftpmaster.internal/ubuntu noble/main ppc64el x11proto-dev all 2023.2-1 [602 kB] Get:208 http://ftpmaster.internal/ubuntu noble/main ppc64el x11proto-core-dev all 2023.2-1 [2444 B] Get:209 http://ftpmaster.internal/ubuntu noble/main ppc64el libice-dev ppc64el 2:1.0.10-1build2 [60.0 kB] Get:210 http://ftpmaster.internal/ubuntu noble/main ppc64el libsm-dev ppc64el 2:1.2.3-1build2 [20.7 kB] Get:211 http://ftpmaster.internal/ubuntu noble/main ppc64el libxau-dev ppc64el 1:1.0.9-1build5 [10.3 kB] Get:212 http://ftpmaster.internal/ubuntu noble/main ppc64el libxdmcp-dev ppc64el 1:1.1.3-0ubuntu5 [28.1 kB] Get:213 http://ftpmaster.internal/ubuntu noble/main ppc64el xtrans-dev all 1.4.0-1 [68.9 kB] Get:214 http://ftpmaster.internal/ubuntu noble/main ppc64el libpthread-stubs0-dev ppc64el 0.4-1build2 [5510 B] Get:215 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb1-dev ppc64el 1.15-1 [96.0 kB] Get:216 http://ftpmaster.internal/ubuntu noble/main ppc64el libx11-dev ppc64el 2:1.8.7-1 [837 kB] Get:217 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-render0-dev ppc64el 1.15-1 [20.9 kB] Get:218 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-shm0-dev ppc64el 1.15-1 [7294 B] Get:219 http://ftpmaster.internal/ubuntu noble/main ppc64el libxext-dev ppc64el 2:1.3.4-1build1 [96.3 kB] Get:220 http://ftpmaster.internal/ubuntu noble/main ppc64el libxrender-dev ppc64el 1:0.9.10-1.1 [30.4 kB] Get:221 http://ftpmaster.internal/ubuntu noble/main ppc64el libcairo2-dev ppc64el 1.18.0-1 [41.1 kB] Get:222 http://ftpmaster.internal/ubuntu noble/universe ppc64el libcommons-parent-java all 56-1 [10.7 kB] Get:223 http://ftpmaster.internal/ubuntu noble/universe ppc64el libcommons-logging-java all 1.2-4 [59.8 kB] Get:224 http://ftpmaster.internal/ubuntu noble/main ppc64el libsasl2-modules-db ppc64el 2.1.28+dfsg1-4 [22.9 kB] Get:225 http://ftpmaster.internal/ubuntu noble/main ppc64el libsasl2-2 ppc64el 2.1.28+dfsg1-4 [65.5 kB] Get:226 http://ftpmaster.internal/ubuntu noble/main ppc64el libldap2 ppc64el 2.6.6+dfsg-1~exp1ubuntu1 [228 kB] Get:227 http://ftpmaster.internal/ubuntu noble/main ppc64el librtmp1 ppc64el 2.4+20151223.gitfa8646d.1-2build4 [65.5 kB] Get:228 http://ftpmaster.internal/ubuntu noble/main ppc64el libssh-4 ppc64el 0.10.5-3ubuntu1 [238 kB] Get:229 http://ftpmaster.internal/ubuntu noble/main ppc64el libcurl4 ppc64el 8.4.0-2ubuntu1 [419 kB] Get:230 http://ftpmaster.internal/ubuntu noble/main ppc64el libcurl4-openssl-dev ppc64el 8.4.0-2ubuntu1 [526 kB] Get:231 http://ftpmaster.internal/ubuntu noble/main ppc64el libdatrie-dev ppc64el 0.2.13-2 [23.9 kB] Get:232 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate-dev ppc64el 1.18-1 [65.8 kB] Get:233 http://ftpmaster.internal/ubuntu noble/main ppc64el libfile-which-perl all 1.27-2 [12.5 kB] Get:234 http://ftpmaster.internal/ubuntu noble/main ppc64el libfile-homedir-perl all 1.006-2 [37.0 kB] Get:235 http://ftpmaster.internal/ubuntu noble/main ppc64el libfontconfig1-dev ppc64el 2.14.2-6ubuntu1 [1826 B] Get:236 http://ftpmaster.internal/ubuntu noble/main ppc64el libfontenc1 ppc64el 1:1.1.4-1build3 [16.2 kB] Get:237 http://ftpmaster.internal/ubuntu noble/main ppc64el libfribidi-dev ppc64el 1.0.13-3 [66.6 kB] Get:238 http://ftpmaster.internal/ubuntu noble/main ppc64el libgraphite2-dev ppc64el 1.3.14-1build2 [14.7 kB] Get:239 http://ftpmaster.internal/ubuntu noble/main ppc64el libharfbuzz-cairo0 ppc64el 8.0.1-1 [34.9 kB] Get:240 http://ftpmaster.internal/ubuntu noble/main ppc64el libharfbuzz-icu0 ppc64el 8.0.1-1 [13.4 kB] Get:241 http://ftpmaster.internal/ubuntu noble/main ppc64el libharfbuzz-gobject0 ppc64el 8.0.1-1 [34.2 kB] Get:242 http://ftpmaster.internal/ubuntu noble/main ppc64el libharfbuzz-subset0 ppc64el 8.0.1-1 [437 kB] Get:243 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libicu-dev ppc64el 74.2-1ubuntu1 [12.5 MB] Get:244 http://ftpmaster.internal/ubuntu noble/main ppc64el libharfbuzz-dev ppc64el 8.0.1-1 [142 kB] Get:245 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg-turbo8-dev ppc64el 2.1.5-2ubuntu1 [357 kB] Get:246 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg8-dev ppc64el 8c-2ubuntu11 [1484 B] Get:247 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg-dev ppc64el 8c-2ubuntu11 [1486 B] Get:248 http://ftpmaster.internal/ubuntu noble/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] Get:249 http://ftpmaster.internal/ubuntu noble/main ppc64el libkpathsea6 ppc64el 2023.20230311.66589-8 [69.8 kB] Get:250 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack3 ppc64el 3.11.0-2build1 [2670 kB] Get:251 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack-dev ppc64el 3.11.0-2build1 [5734 kB] Get:252 http://ftpmaster.internal/ubuntu noble/main ppc64el liblerc-dev ppc64el 4.0.0+ds-4ubuntu1 [280 kB] Get:253 http://ftpmaster.internal/ubuntu noble/universe ppc64el libmime-charset-perl all 1.013.1-2 [31.0 kB] Get:254 http://ftpmaster.internal/ubuntu noble/main ppc64el libncurses-dev ppc64el 6.4+20231209-1 [483 kB] Get:255 http://ftpmaster.internal/ubuntu noble/main ppc64el libthai-dev ppc64el 0.1.29-1build1 [30.1 kB] Get:256 http://ftpmaster.internal/ubuntu noble/main ppc64el libxft-dev ppc64el 2.3.6-1 [78.6 kB] Get:257 http://ftpmaster.internal/ubuntu noble/main ppc64el pango1.0-tools ppc64el 1.51.0+ds-3 [40.1 kB] Get:258 http://ftpmaster.internal/ubuntu noble/main ppc64el libpango1.0-dev ppc64el 1.51.0+ds-3 [146 kB] Get:259 http://ftpmaster.internal/ubuntu noble/main ppc64el libpaper1 ppc64el 1.1.29 [13.5 kB] Get:260 http://ftpmaster.internal/ubuntu noble/main ppc64el libpaper-utils ppc64el 1.1.29 [8710 B] Get:261 http://ftpmaster.internal/ubuntu noble/universe ppc64el libpotrace0 ppc64el 1.16-2 [19.7 kB] Get:262 http://ftpmaster.internal/ubuntu noble/main ppc64el libptexenc1 ppc64el 2023.20230311.66589-8 [42.2 kB] Get:263 http://ftpmaster.internal/ubuntu noble/main ppc64el libreadline-dev ppc64el 8.2-3 [226 kB] Get:264 http://ftpmaster.internal/ubuntu noble/main ppc64el libsharpyuv-dev ppc64el 1.3.2-0.3 [20.4 kB] Get:265 http://ftpmaster.internal/ubuntu noble/universe ppc64el libsombok3 ppc64el 2.4.0-2 [27.7 kB] Get:266 http://ftpmaster.internal/ubuntu noble/main ppc64el libsynctex2 ppc64el 2023.20230311.66589-8 [67.4 kB] Get:267 http://ftpmaster.internal/ubuntu noble/main ppc64el libtcl8.6 ppc64el 8.6.13+dfsg-2 [1179 kB] Get:268 http://ftpmaster.internal/ubuntu noble/universe ppc64el libteckit0 ppc64el 2.5.11+ds1-1 [422 kB] Get:269 http://ftpmaster.internal/ubuntu noble/main ppc64el libtexlua53-5 ppc64el 2023.20230311.66589-8 [160 kB] Get:270 http://ftpmaster.internal/ubuntu noble/universe ppc64el libtext-unidecode-perl all 1.30-3 [105 kB] Get:271 http://ftpmaster.internal/ubuntu noble/main ppc64el libjbig-dev ppc64el 2.1-6.1ubuntu1 [32.5 kB] Get:272 http://ftpmaster.internal/ubuntu noble/main ppc64el liblzma-dev ppc64el 5.4.5-0.1 [204 kB] Get:273 http://ftpmaster.internal/ubuntu noble/main ppc64el libzstd-dev ppc64el 1.5.5+dfsg2-2 [482 kB] Get:274 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebpdemux2 ppc64el 1.3.2-0.3 [14.1 kB] Get:275 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebpmux3 ppc64el 1.3.2-0.3 [31.5 kB] Get:276 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebpdecoder3 ppc64el 1.3.2-0.3 [143 kB] Get:277 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebp-dev ppc64el 1.3.2-0.3 [590 kB] Get:278 http://ftpmaster.internal/ubuntu noble/main ppc64el libtiffxx6 ppc64el 4.5.1+git230720-1ubuntu1 [5822 B] Get:279 http://ftpmaster.internal/ubuntu noble/main ppc64el libtiff-dev ppc64el 4.5.1+git230720-1ubuntu1 [427 kB] Get:280 http://ftpmaster.internal/ubuntu noble/main ppc64el libxss1 ppc64el 1:1.2.3-1build2 [8982 B] Get:281 http://ftpmaster.internal/ubuntu noble/main ppc64el libtk8.6 ppc64el 8.6.13-2 [916 kB] Get:282 http://ftpmaster.internal/ubuntu noble/universe ppc64el libunicode-linebreak-perl ppc64el 0.0.20190101-1build4 [96.8 kB] Get:283 http://ftpmaster.internal/ubuntu noble/main ppc64el libunwind8 ppc64el 1.6.2-3 [59.9 kB] Get:284 http://ftpmaster.internal/ubuntu noble/main ppc64el libxt6 ppc64el 1:1.2.1-1.1 [198 kB] Get:285 http://ftpmaster.internal/ubuntu noble/main ppc64el libxmu6 ppc64el 2:1.1.3-3 [57.2 kB] Get:286 http://ftpmaster.internal/ubuntu noble/main ppc64el libxpm4 ppc64el 1:3.5.17-1 [48.6 kB] Get:287 http://ftpmaster.internal/ubuntu noble/main ppc64el libxaw7 ppc64el 2:1.0.14-1 [227 kB] Get:288 http://ftpmaster.internal/ubuntu noble/main ppc64el libxfont2 ppc64el 1:2.0.6-1 [115 kB] Get:289 http://ftpmaster.internal/ubuntu noble/main ppc64el libxkbfile1 ppc64el 1:1.1.0-1build3 [89.3 kB] Get:290 http://ftpmaster.internal/ubuntu noble/main ppc64el libxml-namespacesupport-perl all 1.12-2 [13.5 kB] Get:291 http://ftpmaster.internal/ubuntu noble/main ppc64el libxml-sax-base-perl all 1.09-3 [18.9 kB] Get:292 http://ftpmaster.internal/ubuntu noble/main ppc64el libxml-sax-perl all 1.02+dfsg-3 [57.0 kB] Get:293 http://ftpmaster.internal/ubuntu noble/main ppc64el libxml-libxml-perl ppc64el 2.0207+dfsg+really+2.0134-1build1 [318 kB] Get:294 http://ftpmaster.internal/ubuntu noble/main ppc64el libxss-dev ppc64el 1:1.2.3-1build2 [13.3 kB] Get:295 http://ftpmaster.internal/ubuntu noble/main ppc64el libxt-dev ppc64el 1:1.2.1-1.1 [441 kB] Get:296 http://ftpmaster.internal/ubuntu noble/main ppc64el libyaml-tiny-perl all 1.74-1 [25.3 kB] Get:297 http://ftpmaster.internal/ubuntu noble/universe ppc64el libzzip-0-13 ppc64el 0.13.72+dfsg.1-1.1 [29.7 kB] Get:298 http://ftpmaster.internal/ubuntu noble/universe ppc64el tex-common all 6.18 [32.8 kB] Get:299 http://ftpmaster.internal/ubuntu noble/main ppc64el xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] Get:300 http://ftpmaster.internal/ubuntu noble/main ppc64el xfonts-utils ppc64el 1:7.7+6build2 [112 kB] Get:301 http://ftpmaster.internal/ubuntu noble/universe ppc64el lmodern all 2.005-1 [9542 kB] Get:302 http://ftpmaster.internal/ubuntu noble/universe ppc64el mpack ppc64el 1.6-18 [44.1 kB] Get:303 http://ftpmaster.internal/ubuntu noble/universe ppc64el preview-latex-style all 13.2-1 [347 kB] Get:304 http://ftpmaster.internal/ubuntu noble/main ppc64el t1utils ppc64el 1.41-4build2 [69.6 kB] Get:305 http://ftpmaster.internal/ubuntu noble/main ppc64el tcl8.6 ppc64el 8.6.13+dfsg-2 [14.8 kB] Get:306 http://ftpmaster.internal/ubuntu noble/main ppc64el tcl8.6-dev ppc64el 8.6.13+dfsg-2 [1202 kB] Get:307 http://ftpmaster.internal/ubuntu noble/universe ppc64el texinfo-lib ppc64el 7.1-2 [147 kB] Get:308 http://ftpmaster.internal/ubuntu noble/universe ppc64el texinfo all 7.1-2 [1273 kB] Get:309 http://ftpmaster.internal/ubuntu noble/universe ppc64el texlive-binaries ppc64el 2023.20230311.66589-8 [12.4 MB] Get:310 http://ftpmaster.internal/ubuntu noble/main ppc64el xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] Get:311 http://ftpmaster.internal/ubuntu noble/universe ppc64el texlive-base all 2023.20231207-1 [21.7 MB] Get:312 http://ftpmaster.internal/ubuntu noble/universe ppc64el texlive-latex-base all 2023.20231207-1 [1231 kB] Get:313 http://ftpmaster.internal/ubuntu noble/universe ppc64el texlive-luatex all 2023.20231207-1 [25.5 MB] Get:314 http://ftpmaster.internal/ubuntu noble/universe ppc64el texlive-plain-generic all 2023.20231207-3 [28.9 MB] Get:315 http://ftpmaster.internal/ubuntu noble/universe ppc64el texlive-extra-utils all 2023.20231207-3 [63.0 MB] Get:316 http://ftpmaster.internal/ubuntu noble/universe ppc64el texlive-fonts-extra all 2023.20231207-3 [526 MB] Get:317 http://ftpmaster.internal/ubuntu noble/universe ppc64el texlive-fonts-recommended all 2023.20231207-1 [4972 kB] Get:318 http://ftpmaster.internal/ubuntu noble/universe ppc64el libfontbox-java all 1:1.8.16-5 [208 kB] Get:319 http://ftpmaster.internal/ubuntu noble/universe ppc64el libpdfbox-java all 1:1.8.16-5 [5521 kB] Get:320 http://ftpmaster.internal/ubuntu noble/universe ppc64el texlive-latex-recommended all 2023.20231207-1 [8818 kB] Get:321 http://ftpmaster.internal/ubuntu noble/universe ppc64el texlive-pictures all 2023.20231207-1 [16.6 MB] Get:322 http://ftpmaster.internal/ubuntu noble/universe ppc64el texlive-latex-extra all 2023.20231207-3 [19.2 MB] Get:323 http://ftpmaster.internal/ubuntu noble/main ppc64el tk8.6 ppc64el 8.6.13-2 [12.3 kB] Get:324 http://ftpmaster.internal/ubuntu noble/main ppc64el tk8.6-dev ppc64el 8.6.13-2 [950 kB] Get:325 http://ftpmaster.internal/ubuntu noble/main ppc64el x11-xkb-utils ppc64el 7.7+8 [199 kB] Get:326 http://ftpmaster.internal/ubuntu noble/main ppc64el xfonts-base all 1:1.0.5+nmu1 [5941 kB] Get:327 http://ftpmaster.internal/ubuntu noble/main ppc64el xserver-common all 2:21.1.10-1ubuntu1 [32.5 kB] Get:328 http://ftpmaster.internal/ubuntu noble/universe ppc64el xvfb ppc64el 2:21.1.10-1ubuntu1 [1085 kB] Preconfiguring packages ... Fetched 1029 MB in 45s (22.8 MB/s) Selecting previously unselected package libpython3.11-minimal:ppc64el. (Reading database ... 13722 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.7-2_ppc64el.deb ... Unpacking libpython3.11-minimal:ppc64el (3.11.7-2) ... Selecting previously unselected package libexpat1:ppc64el. Preparing to unpack .../libexpat1_2.5.0-2_ppc64el.deb ... Unpacking libexpat1:ppc64el (2.5.0-2) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.7-2_ppc64el.deb ... Unpacking python3.11-minimal (3.11.7-2) ... Setting up libpython3.11-minimal:ppc64el (3.11.7-2) ... Setting up libexpat1:ppc64el (2.5.0-2) ... Setting up python3.11-minimal (3.11.7-2) ... Selecting previously unselected package python3-minimal. (Reading database ... 14036 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.4-5ubuntu1_ppc64el.deb ... Unpacking python3-minimal (3.11.4-5ubuntu1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package libpython3.11-stdlib:ppc64el. Preparing to unpack .../3-libpython3.11-stdlib_3.11.7-2_ppc64el.deb ... Unpacking libpython3.11-stdlib:ppc64el (3.11.7-2) ... Selecting previously unselected package python3.11. Preparing to unpack .../4-python3.11_3.11.7-2_ppc64el.deb ... Unpacking python3.11 (3.11.7-2) ... Selecting previously unselected package libpython3-stdlib:ppc64el. Preparing to unpack .../5-libpython3-stdlib_3.11.4-5ubuntu1_ppc64el.deb ... Unpacking libpython3-stdlib:ppc64el (3.11.4-5ubuntu1) ... Setting up python3-minimal (3.11.4-5ubuntu1) ... Selecting previously unselected package python3. (Reading database ... 14470 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.4-5ubuntu1_ppc64el.deb ... Unpacking python3 (3.11.4-5ubuntu1) ... Selecting previously unselected package libglib2.0-0:ppc64el. Preparing to unpack .../001-libglib2.0-0_2.78.3-1_ppc64el.deb ... Unpacking libglib2.0-0:ppc64el (2.78.3-1) ... Selecting previously unselected package libgirepository-1.0-1:ppc64el. Preparing to unpack .../002-libgirepository-1.0-1_1.78.1-5_ppc64el.deb ... Unpacking libgirepository-1.0-1:ppc64el (1.78.1-5) ... Selecting previously unselected package gir1.2-glib-2.0:ppc64el. Preparing to unpack .../003-gir1.2-glib-2.0_1.78.1-5_ppc64el.deb ... Unpacking gir1.2-glib-2.0:ppc64el (1.78.1-5) ... Selecting previously unselected package libbsd0:ppc64el. Preparing to unpack .../004-libbsd0_0.11.7-4_ppc64el.deb ... Unpacking libbsd0:ppc64el (0.11.7-4) ... Selecting previously unselected package libdbus-1-3:ppc64el. Preparing to unpack .../005-libdbus-1-3_1.14.10-1ubuntu1_ppc64el.deb ... Unpacking libdbus-1-3:ppc64el (1.14.10-1ubuntu1) ... Selecting previously unselected package libelf1:ppc64el. Preparing to unpack .../006-libelf1_0.190-1_ppc64el.deb ... Unpacking libelf1:ppc64el (0.190-1) ... Selecting previously unselected package libfribidi0:ppc64el. Preparing to unpack .../007-libfribidi0_1.0.13-3_ppc64el.deb ... Unpacking libfribidi0:ppc64el (1.0.13-3) ... Selecting previously unselected package libglib2.0-data. Preparing to unpack .../008-libglib2.0-data_2.78.3-1_all.deb ... Unpacking libglib2.0-data (2.78.3-1) ... Selecting previously unselected package libicu72:ppc64el. Preparing to unpack .../009-libicu72_72.1-4ubuntu1_ppc64el.deb ... Unpacking libicu72:ppc64el (72.1-4ubuntu1) ... Selecting previously unselected package libxml2:ppc64el. Preparing to unpack .../010-libxml2_2.9.14+dfsg-1.3build2_ppc64el.deb ... Unpacking libxml2:ppc64el (2.9.14+dfsg-1.3build2) ... Selecting previously unselected package shared-mime-info. Preparing to unpack .../011-shared-mime-info_2.4-1_ppc64el.deb ... Unpacking shared-mime-info (2.4-1) ... Selecting previously unselected package ucf. Preparing to unpack .../012-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package xkb-data. Preparing to unpack .../013-xkb-data_2.38-2_all.deb ... Unpacking xkb-data (2.38-2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../014-libmagic-mgc_1%3a5.45-2_ppc64el.deb ... Unpacking libmagic-mgc (1:5.45-2) ... Selecting previously unselected package libmagic1:ppc64el. Preparing to unpack .../015-libmagic1_1%3a5.45-2_ppc64el.deb ... Unpacking libmagic1:ppc64el (1:5.45-2) ... Selecting previously unselected package file. Preparing to unpack .../016-file_1%3a5.45-2_ppc64el.deb ... Unpacking file (1:5.45-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../017-gettext-base_0.21-14_ppc64el.deb ... Unpacking gettext-base (0.21-14) ... Selecting previously unselected package libuchardet0:ppc64el. Preparing to unpack .../018-libuchardet0_0.0.8-1_ppc64el.deb ... Unpacking libuchardet0:ppc64el (0.0.8-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../019-groff-base_1.23.0-3_ppc64el.deb ... Unpacking groff-base (1.23.0-3) ... Selecting previously unselected package libdrm-common. Preparing to unpack .../020-libdrm-common_2.4.117-1_all.deb ... Unpacking libdrm-common (2.4.117-1) ... Selecting previously unselected package libdrm2:ppc64el. Preparing to unpack .../021-libdrm2_2.4.117-1_ppc64el.deb ... Unpacking libdrm2:ppc64el (2.4.117-1) ... Selecting previously unselected package libedit2:ppc64el. Preparing to unpack .../022-libedit2_3.1-20230828-1_ppc64el.deb ... Unpacking libedit2:ppc64el (3.1-20230828-1) ... Selecting previously unselected package libncurses6:ppc64el. Preparing to unpack .../023-libncurses6_6.4+20231209-1_ppc64el.deb ... Unpacking libncurses6:ppc64el (6.4+20231209-1) ... Selecting previously unselected package libnghttp2-14:ppc64el. Preparing to unpack .../024-libnghttp2-14_1.58.0-1_ppc64el.deb ... Unpacking libnghttp2-14:ppc64el (1.58.0-1) ... Selecting previously unselected package libpipeline1:ppc64el. Preparing to unpack .../025-libpipeline1_1.5.7-1_ppc64el.deb ... Unpacking libpipeline1:ppc64el (1.5.7-1) ... Selecting previously unselected package libpsl5:ppc64el. Preparing to unpack .../026-libpsl5_0.21.2-1build1_ppc64el.deb ... Unpacking libpsl5:ppc64el (0.21.2-1build1) ... Selecting previously unselected package libxau6:ppc64el. Preparing to unpack .../027-libxau6_1%3a1.0.9-1build5_ppc64el.deb ... Unpacking libxau6:ppc64el (1:1.0.9-1build5) ... Selecting previously unselected package libxdmcp6:ppc64el. Preparing to unpack .../028-libxdmcp6_1%3a1.1.3-0ubuntu5_ppc64el.deb ... Unpacking libxdmcp6:ppc64el (1:1.1.3-0ubuntu5) ... Selecting previously unselected package libxcb1:ppc64el. Preparing to unpack .../029-libxcb1_1.15-1_ppc64el.deb ... Unpacking libxcb1:ppc64el (1.15-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../030-libx11-data_2%3a1.8.7-1_all.deb ... Unpacking libx11-data (2:1.8.7-1) ... Selecting previously unselected package libx11-6:ppc64el. Preparing to unpack .../031-libx11-6_2%3a1.8.7-1_ppc64el.deb ... Unpacking libx11-6:ppc64el (2:1.8.7-1) ... Selecting previously unselected package libxext6:ppc64el. Preparing to unpack .../032-libxext6_2%3a1.3.4-1build1_ppc64el.deb ... Unpacking libxext6:ppc64el (2:1.3.4-1build1) ... Selecting previously unselected package libxmuu1:ppc64el. Preparing to unpack .../033-libxmuu1_2%3a1.1.3-3_ppc64el.deb ... Unpacking libxmuu1:ppc64el (2:1.1.3-3) ... Selecting previously unselected package man-db. Preparing to unpack .../034-man-db_2.12.0-1_ppc64el.deb ... Unpacking man-db (2.12.0-1) ... Selecting previously unselected package xauth. Preparing to unpack .../035-xauth_1%3a1.1.2-1_ppc64el.deb ... Unpacking xauth (1:1.1.2-1) ... Selecting previously unselected package hicolor-icon-theme. Preparing to unpack .../036-hicolor-icon-theme_0.17-2_all.deb ... Unpacking hicolor-icon-theme (0.17-2) ... Selecting previously unselected package libgdk-pixbuf2.0-common. Preparing to unpack .../037-libgdk-pixbuf2.0-common_2.42.10+dfsg-3_all.deb ... Unpacking libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... Selecting previously unselected package libjpeg-turbo8:ppc64el. Preparing to unpack .../038-libjpeg-turbo8_2.1.5-2ubuntu1_ppc64el.deb ... Unpacking libjpeg-turbo8:ppc64el (2.1.5-2ubuntu1) ... Selecting previously unselected package libjpeg8:ppc64el. Preparing to unpack .../039-libjpeg8_8c-2ubuntu11_ppc64el.deb ... Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... Selecting previously unselected package libdeflate0:ppc64el. Preparing to unpack .../040-libdeflate0_1.18-1_ppc64el.deb ... Unpacking libdeflate0:ppc64el (1.18-1) ... Selecting previously unselected package libjbig0:ppc64el. Preparing to unpack .../041-libjbig0_2.1-6.1ubuntu1_ppc64el.deb ... Unpacking libjbig0:ppc64el (2.1-6.1ubuntu1) ... Selecting previously unselected package liblerc4:ppc64el. Preparing to unpack .../042-liblerc4_4.0.0+ds-4ubuntu1_ppc64el.deb ... Unpacking liblerc4:ppc64el (4.0.0+ds-4ubuntu1) ... Selecting previously unselected package libsharpyuv0:ppc64el. Preparing to unpack .../043-libsharpyuv0_1.3.2-0.3_ppc64el.deb ... Unpacking libsharpyuv0:ppc64el (1.3.2-0.3) ... Selecting previously unselected package libwebp7:ppc64el. Preparing to unpack .../044-libwebp7_1.3.2-0.3_ppc64el.deb ... Unpacking libwebp7:ppc64el (1.3.2-0.3) ... Selecting previously unselected package libtiff6:ppc64el. Preparing to unpack .../045-libtiff6_4.5.1+git230720-1ubuntu1_ppc64el.deb ... Unpacking libtiff6:ppc64el (4.5.1+git230720-1ubuntu1) ... Selecting previously unselected package libgdk-pixbuf-2.0-0:ppc64el. Preparing to unpack .../046-libgdk-pixbuf-2.0-0_2.42.10+dfsg-3_ppc64el.deb ... Unpacking libgdk-pixbuf-2.0-0:ppc64el (2.42.10+dfsg-3) ... Selecting previously unselected package gtk-update-icon-cache. Preparing to unpack .../047-gtk-update-icon-cache_3.24.38-5ubuntu2_ppc64el.deb ... Unpacking gtk-update-icon-cache (3.24.38-5ubuntu2) ... Selecting previously unselected package humanity-icon-theme. Preparing to unpack .../048-humanity-icon-theme_0.6.16_all.deb ... Unpacking humanity-icon-theme (0.6.16) ... Selecting previously unselected package ubuntu-mono. Preparing to unpack .../049-ubuntu-mono_20.10-0ubuntu2_all.deb ... Unpacking ubuntu-mono (20.10-0ubuntu2) ... Selecting previously unselected package adwaita-icon-theme. Preparing to unpack .../050-adwaita-icon-theme_41.0-1ubuntu1_all.deb ... Unpacking adwaita-icon-theme (41.0-1ubuntu1) ... Selecting previously unselected package at-spi2-common. Preparing to unpack .../051-at-spi2-common_2.50.0-1_all.deb ... 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Unpacking openjdk-17-jdk:ppc64el (17.0.9+9-2) ... Selecting previously unselected package default-jdk. Preparing to unpack .../147-default-jdk_2%3a1.17-75_ppc64el.deb ... Unpacking default-jdk (2:1.17-75) ... Selecting previously unselected package fonts-lmodern. Preparing to unpack .../148-fonts-lmodern_2.005-1_all.deb ... Unpacking fonts-lmodern (2.005-1) ... Selecting previously unselected package libgfortran5:ppc64el. Preparing to unpack .../149-libgfortran5_13.2.0-9ubuntu1_ppc64el.deb ... Unpacking libgfortran5:ppc64el (13.2.0-9ubuntu1) ... Selecting previously unselected package libgfortran-13-dev:ppc64el. Preparing to unpack .../150-libgfortran-13-dev_13.2.0-9ubuntu1_ppc64el.deb ... Unpacking libgfortran-13-dev:ppc64el (13.2.0-9ubuntu1) ... Selecting previously unselected package gfortran-13. Preparing to unpack .../151-gfortran-13_13.2.0-9ubuntu1_ppc64el.deb ... Unpacking gfortran-13 (13.2.0-9ubuntu1) ... Selecting previously unselected package gfortran. 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Selecting previously unselected package libharfbuzz-cairo0:ppc64el. Preparing to unpack .../228-libharfbuzz-cairo0_8.0.1-1_ppc64el.deb ... Unpacking libharfbuzz-cairo0:ppc64el (8.0.1-1) ... Selecting previously unselected package libharfbuzz-icu0:ppc64el. Preparing to unpack .../229-libharfbuzz-icu0_8.0.1-1_ppc64el.deb ... Unpacking libharfbuzz-icu0:ppc64el (8.0.1-1) ... Selecting previously unselected package libharfbuzz-gobject0:ppc64el. Preparing to unpack .../230-libharfbuzz-gobject0_8.0.1-1_ppc64el.deb ... Unpacking libharfbuzz-gobject0:ppc64el (8.0.1-1) ... Selecting previously unselected package libharfbuzz-subset0:ppc64el. Preparing to unpack .../231-libharfbuzz-subset0_8.0.1-1_ppc64el.deb ... Unpacking libharfbuzz-subset0:ppc64el (8.0.1-1) ... Selecting previously unselected package libicu-dev:ppc64el. Preparing to unpack .../232-libicu-dev_74.2-1ubuntu1_ppc64el.deb ... Unpacking libicu-dev:ppc64el (74.2-1ubuntu1) ... 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Selecting previously unselected package xserver-common. Preparing to unpack .../316-xserver-common_2%3a21.1.10-1ubuntu1_all.deb ... Unpacking xserver-common (2:21.1.10-1ubuntu1) ... Selecting previously unselected package xvfb. Preparing to unpack .../317-xvfb_2%3a21.1.10-1ubuntu1_ppc64el.deb ... Unpacking xvfb (2:21.1.10-1ubuntu1) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../318-sbuild-build-depends-main-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:ppc64el (1.5.7-1) ... Setting up libgraphite2-3:ppc64el (1.3.14-1build2) ... Setting up liblcms2-2:ppc64el (2.14-2) ... Setting up libpixman-1-0:ppc64el (0.42.2-1) ... Setting up libsharpyuv0:ppc64el (1.3.2-0.3) ... Setting up libfile-which-perl (1.27-2) ... Setting up libxau6:ppc64el (1:1.0.9-1build5) ... Setting up libpsl5:ppc64el (0.21.2-1build1) ... Setting up libpixman-1-dev:ppc64el (0.42.2-1) ... Setting up libicu72:ppc64el (72.1-4ubuntu1) ... Setting up liblerc4:ppc64el (4.0.0+ds-4ubuntu1) ... Setting up libzstd-dev:ppc64el (1.5.5+dfsg2-2) ... Setting up hicolor-icon-theme (0.17-2) ... Setting up java-common (0.75) ... Setting up libdatrie1:ppc64el (0.2.13-2) ... Setting up libmagic-mgc (1:5.45-2) ... Setting up mpack (1.6-18) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:ppc64el (2.78.3-1) ... No schema files found: doing nothing. Setting up libglvnd0:ppc64el (1.7.0-1) ... Setting up libdebhelper-perl (13.11.8ubuntu1) ... Setting up libbrotli1:ppc64el (1.1.0-2) ... Setting up libfontbox-java (1:1.8.16-5) ... Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... Setting up x11-common (1:7.7+23ubuntu2) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libsensors-config (1:3.6.0-7ubuntu1) ... Setting up libnghttp2-14:ppc64el (1.58.0-1) ... Setting up libmagic1:ppc64el (1:5.45-2) ... Setting up libdeflate0:ppc64el (1.18-1) ... Setting up libwebpdecoder3:ppc64el (1.3.2-0.3) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-14) ... Setting up m4 (1.4.19-4) ... Setting up xkb-data (2.38-2) ... Setting up liblzo2-2:ppc64el (2.10-2build3) ... Setting up libzzip-0-13:ppc64el (0.13.72+dfsg.1-1.1) ... Setting up file (1:5.45-2) ... Setting up texinfo-lib (7.1-2) ... Setting up libffi-dev:ppc64el (3.4.4-2) ... Setting up libunwind8:ppc64el (1.6.2-3) ... Setting up libyaml-tiny-perl (1.74-1) ... Setting up libpthread-stubs0-dev:ppc64el (0.4-1build2) ... Setting up libjbig0:ppc64el (2.1-6.1ubuntu1) ... Setting up libpcre2-16-0:ppc64el (10.42-4ubuntu1) ... Setting up libsasl2-modules-db:ppc64el (2.1.28+dfsg1-4) ... Setting up libasound2-data (1.2.10-3) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up xtrans-dev (1.4.0-1) ... Setting up libgraphite2-dev:ppc64el (1.3.14-1build2) ... Setting up libfontenc1:ppc64el (1:1.1.4-1build3) ... Setting up autotools-dev (20220109.1) ... Setting up libpcre2-32-0:ppc64el (10.42-4ubuntu1) ... Setting up libblas3:ppc64el (3.11.0-2build1) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode Setting up libglib2.0-data (2.78.3-1) ... Setting up libpkgconf3:ppc64el (1.8.1-2) ... Setting up libexpat1-dev:ppc64el (2.5.0-2) ... Setting up libfreetype6:ppc64el (2.13.2+dfsg-1) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libnspr4:ppc64el (2:4.35-1.1) ... Setting up librtmp1:ppc64el (2.4+20151223.gitfa8646d.1-2build4) ... Setting up libteckit0:ppc64el (2.5.11+ds1-1) ... Setting up uuid-dev:ppc64el (2.39.2-6ubuntu1) ... Setting up libapache-pom-java (29-2) ... Setting up libavahi-common-data:ppc64el (0.8-13ubuntu2) ... Setting up libncurses6:ppc64el (6.4+20231209-1) ... Setting up libdbus-1-3:ppc64el (1.14.10-1ubuntu1) ... Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... Setting up libfribidi0:ppc64el (1.0.13-3) ... Setting up t1utils (1.41-4build2) ... Setting up libtexlua53-5:ppc64el (2023.20230311.66589-8) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libtcl8.6:ppc64el (8.6.13+dfsg-2) ... Setting up autopoint (0.21-14) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libsepol-dev:ppc64el (3.5-2) ... Setting up libpcsclite1:ppc64el (2.0.1-1) ... Setting up ucf (3.0043+nmu1) ... Setting up pkgconf-bin (1.8.1-2) ... Setting up libsensors5:ppc64el (1:3.6.0-7ubuntu1) ... Setting up liblerc-dev:ppc64el (4.0.0+ds-4ubuntu1) ... Setting up libjpeg-turbo8:ppc64el (2.1.5-2ubuntu1) ... Setting up libglapi-mesa:ppc64el (23.3.0-2ubuntu3) ... Setting up libkpathsea6:ppc64el (2023.20230311.66589-8) ... Setting up libsasl2-2:ppc64el (2.1.28+dfsg1-4) ... Setting up libssh-4:ppc64el (0.10.5-3ubuntu1) ... Setting up libgfortran5:ppc64el (13.2.0-9ubuntu1) ... Setting up libvulkan1:ppc64el (1.3.268.0-1) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:ppc64el (1.3.2-0.3) ... Setting up liblzma-dev:ppc64el (5.4.5-0.1) ... Setting up libicu74:ppc64el (74.2-1ubuntu1) ... Setting up libgif7:ppc64el (5.2.1-2.5) ... Setting up zlib1g-dev:ppc64el (1:1.3.dfsg-3ubuntu1) ... Setting up libpcre2-posix3:ppc64el (10.42-4ubuntu1) ... Setting up libxshmfence1:ppc64el (1.3-1build4) ... Setting up at-spi2-common (2.50.0-1) ... Setting up libmime-charset-perl (1.013.1-2) ... Setting up libuchardet0:ppc64el (0.0.8-1) ... Setting up libasound2:ppc64el (1.2.10-3) ... Setting up bison (2:3.8.2+dfsg-1build1) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode Setting up fonts-lmodern (2.005-1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libharfbuzz0b:ppc64el (8.0.1-1) ... Setting up libthai-data (0.1.29-1build1) ... Setting up libgirepository-1.0-1:ppc64el (1.78.1-5) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up netbase (6.4) ... Setting up libgtk2.0-common (2.24.33-2ubuntu2) ... Setting up libatk1.0-0:ppc64el (2.50.0-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up ca-certificates-java (20230710) ... No JRE found. Skipping Java certificates setup. Setting up libtext-unidecode-perl (1.30-3) ... Setting up libsharpyuv-dev:ppc64el (1.3.2-0.3) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up libgfortran-13-dev:ppc64el (13.2.0-9ubuntu1) ... Setting up libwebpmux3:ppc64el (1.3.2-0.3) ... Setting up libbsd0:ppc64el (0.11.7-4) ... Setting up libdeflate-dev:ppc64el (1.18-1) ... Setting up libdrm-common (2.4.117-1) ... Setting up libelf1:ppc64el (0.190-1) ... Setting up libxfont2:ppc64el (1:2.0.6-1) ... Setting up libxml2:ppc64el (2.9.14+dfsg-1.3build2) ... Setting up xdg-utils (1.1.3-4.1ubuntu3) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libldap2:ppc64el (2.6.6+dfsg-1~exp1ubuntu1) ... Setting up libbrotli-dev:ppc64el (1.1.0-2) ... Setting up libblas-dev:ppc64el (3.11.0-2build1) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so to provide /usr/lib/powerpc64le-linux-gnu/libblas.so (libblas.so-powerpc64le-linux-gnu) in auto mode Setting up libsynctex2:ppc64el (2023.20230311.66589-8) ... Setting up libbz2-dev:ppc64el (1.0.8-5build1) ... Setting up libpotrace0:ppc64el (1.16-2) ... Setting up libjpeg8:ppc64el (8c-2ubuntu11) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2023.2-1) ... Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libblkid-dev:ppc64el (2.39.2-6ubuntu1) ... Setting up libpaper1:ppc64el (1.1.29) ... Creating config file /etc/papersize with new version Setting up libice6:ppc64el (2:1.0.10-1build2) ... Setting up libdw1:ppc64el (0.190-1) ... Setting up libjpeg-turbo8-dev:ppc64el (2.1.5-2ubuntu1) ... Setting up libxdmcp6:ppc64el (1:1.1.3-0ubuntu5) ... Setting up tcl8.6 (8.6.13+dfsg-2) ... Setting up liblapack3:ppc64el (3.11.0-2build1) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode Setting up libncurses-dev:ppc64el (6.4+20231209-1) ... Setting up libxcb1:ppc64el (1.15-1) ... Setting up gettext (0.21-14) ... Setting up libharfbuzz-icu0:ppc64el (8.0.1-1) ... Setting up libxcb-xfixes0:ppc64el (1.15-1) ... Setting up libpdfbox-java (1:1.8.16-5) ... Setting up libxau-dev:ppc64el (1:1.0.9-1build5) ... Setting up libpcre2-dev:ppc64el (10.42-4ubuntu1) ... Setting up libice-dev:ppc64el (2:1.0.10-1build2) ... Setting up libtool (2.4.7-7) ... Setting up libxcb-render0:ppc64el (1.15-1) ... Setting up libselinux1-dev:ppc64el (3.5-1build2) ... Setting up fontconfig-config (2.14.2-6ubuntu1) ... Setting up libfribidi-dev:ppc64el (1.0.13-3) ... Setting up libxcb-glx0:ppc64el (1.15-1) ... Setting up libwebpdemux2:ppc64el (1.3.2-0.3) ... Setting up libpython3.11-stdlib:ppc64el (3.11.7-2) ... Setting up tcl8.6-dev:ppc64el (8.6.13+dfsg-2) ... Setting up libedit2:ppc64el (3.1-20230828-1) ... Setting up libpng-dev:ppc64el (1.6.40-2) ... Setting up libcommons-parent-java (56-1) ... Setting up libavahi-common3:ppc64el (0.8-13ubuntu2) ... Setting up libjbig-dev:ppc64el (2.1-6.1ubuntu1) ... Setting up libcommons-logging-java (1.2-4) ... Setting up libglib2.0-bin (2.78.3-1) ... Setting up libnss3:ppc64el (2:3.96.1-1) ... Setting up libxcb-shm0:ppc64el (1.15-1) ... Setting up libharfbuzz-gobject0:ppc64el (8.0.1-1) ... Setting up libpaper-utils (1.1.29) ... Setting up libreadline-dev:ppc64el (8.2-3) ... Setting up xfonts-utils (1:7.7+6build2) ... Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up pkgconf:ppc64el (1.8.1-2) ... Setting up libfreetype-dev:ppc64el (2.13.2+dfsg-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libxcb-present0:ppc64el (1.15-1) ... Setting up dh-autoreconf (20) ... Setting up tex-common (6.18) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libthai0:ppc64el (0.1.29-1build1) ... Setting up libxdmcp-dev:ppc64el (1:1.1.3-0ubuntu5) ... Setting up xfonts-base (1:1.0.5+nmu1) ... Setting up libwebp-dev:ppc64el (1.3.2-0.3) ... Setting up libptexenc1:ppc64el (2023.20230311.66589-8) ... Setting up libxcb-sync1:ppc64el (1.15-1) ... Setting up gfortran-13 (13.2.0-9ubuntu1) ... Setting up x11proto-core-dev (2023.2-1) ... Setting up shared-mime-info (2.4-1) ... Setting up liblapack-dev:ppc64el (3.11.0-2build1) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so (liblapack.so-powerpc64le-linux-gnu) in auto mode Setting up icu-devtools (74.2-1ubuntu1) ... Setting up pkg-config:ppc64el (1.8.1-2) ... Setting up gir1.2-glib-2.0:ppc64el (1.78.1-5) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1build1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxcb-dri2-0:ppc64el (1.15-1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libdrm2:ppc64el (2.4.117-1) ... Setting up dwz (0.15-1) ... Setting up libdatrie-dev:ppc64el (0.2.13-2) ... Setting up groff-base (1.23.0-3) ... Setting up libtiff6:ppc64el (4.5.1+git230720-1ubuntu1) ... Setting up libxcb-randr0:ppc64el (1.15-1) ... Setting up lmodern (2.005-1) ... Setting up debugedit (1:5.0-5) ... Setting up libharfbuzz-subset0:ppc64el (8.0.1-1) ... Setting up libcurl4:ppc64el (8.4.0-2ubuntu1) ... Setting up libx11-6:ppc64el (2:1.8.7-1) ... Setting up libgdk-pixbuf-2.0-0:ppc64el (2.42.10+dfsg-3) ... Setting up libfontconfig1:ppc64el (2.14.2-6ubuntu1) ... Setting up libxkbfile1:ppc64el (1:1.1.0-1build3) ... Setting up libjpeg8-dev:ppc64el (8c-2ubuntu11) ... Setting up libtiffxx6:ppc64el (4.5.1+git230720-1ubuntu1) ... Setting up libllvm17:ppc64el (1:17.0.6-3) ... Setting up libxcomposite1:ppc64el (1:0.4.5-1build2) ... Setting up libsm6:ppc64el (2:1.2.3-1build2) ... Setting up libicu-dev:ppc64el (74.2-1ubuntu1) ... Setting up libavahi-client3:ppc64el (0.8-13ubuntu2) ... Setting up libmount-dev:ppc64el (2.39.2-6ubuntu1) ... Setting up libxmuu1:ppc64el (2:1.1.3-3) ... Setting up libpython3-stdlib:ppc64el (3.11.4-5ubuntu1) ... Setting up libdrm-amdgpu1:ppc64el (2.4.117-1) ... Setting up libxcb-dri3-0:ppc64el (1.15-1) ... Setting up gtk-update-icon-cache (3.24.38-5ubuntu2) ... Setting up libx11-xcb1:ppc64el (2:1.8.7-1) ... Setting up python3.11 (3.11.7-2) ... Setting up fontconfig (2.14.2-6ubuntu1) ... Regenerating fonts cache... done. Setting up libdrm-nouveau2:ppc64el (2.4.117-1) ... Setting up libxdamage1:ppc64el (1:1.1.6-1) ... Setting up libxcb1-dev:ppc64el (1.15-1) ... Setting up libxpm4:ppc64el (1:3.5.17-1) ... Setting up libxrender1:ppc64el (1:0.9.10-1.1) ... Setting up libsombok3:ppc64el (2.4.0-2) ... Setting up libfontconfig-dev:ppc64el (2.14.2-6ubuntu1) ... Setting up libsm-dev:ppc64el (2:1.2.3-1build2) ... Setting up libdrm-radeon1:ppc64el (2.4.117-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up preview-latex-style (13.2-1) ... Setting up libpango-1.0-0:ppc64el (1.51.0+ds-3) ... Setting up libgl1-mesa-dri:ppc64el (23.3.0-2ubuntu3) ... Setting up libjpeg-dev:ppc64el (8c-2ubuntu11) ... Setting up libx11-dev:ppc64el (2:1.8.7-1) ... Setting up libxext6:ppc64el (2:1.3.4-1build1) ... Setting up python3 (3.11.4-5ubuntu1) ... Setting up man-db (2.12.0-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /usr/lib/systemd/system/man-db.timer. Setting up gfortran (4:13.2.0-2ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:ppc64el (1.18.0-1) ... Setting up libxxf86vm1:ppc64el (1:1.1.4-1build3) ... Setting up libxcb-shm0-dev:ppc64el (1.15-1) ... Setting up libharfbuzz-cairo0:ppc64el (8.0.1-1) ... Setting up libtiff-dev:ppc64el (4.5.1+git230720-1ubuntu1) ... Setting up libxfixes3:ppc64el (1:6.0.0-2) ... Setting up libcurl4-openssl-dev:ppc64el (8.4.0-2ubuntu1) ... Setting up libunicode-linebreak-perl (0.0.20190101-1build4) ... Setting up libxinerama1:ppc64el (2:1.1.4-3) ... Setting up libxrandr2:ppc64el (2:1.5.2-2) ... Setting up libxcb-render0-dev:ppc64el (1.15-1) ... Setting up libxt6:ppc64el (1:1.2.1-1.1) ... Setting up texinfo (7.1-2) ... Running mktexlsr. This may take some time. ... done. Setting up libxext-dev:ppc64el (2:1.3.4-1build1) ... Setting up libthai-dev:ppc64el (0.1.29-1build1) ... Setting up libcups2:ppc64el (2.4.6-0ubuntu3) ... Setting up xauth (1:1.1.2-1) ... Setting up libcairo-gobject2:ppc64el (1.18.0-1) ... Setting up libxss1:ppc64el (1:1.2.3-1build2) ... Setting up libpangoft2-1.0-0:ppc64el (1.51.0+ds-3) ... Setting up python3-lib2to3 (3.11.5-1) ... Setting up libxrender-dev:ppc64el (1:0.9.10-1.1) ... Setting up libpangocairo-1.0-0:ppc64el (1.51.0+ds-3) ... Setting up python3-distutils (3.11.5-1) ... Setting up libcairo-script-interpreter2:ppc64el (1.18.0-1) ... Setting up libglib2.0-dev-bin (2.78.3-1) ... Setting up libxft2:ppc64el (2.3.6-1) ... Setting up libxmu6:ppc64el (2:1.1.3-3) ... Setting up gir1.2-freedesktop:ppc64el (1.78.1-5) ... Setting up libfontconfig1-dev:ppc64el (2.14.2-6ubuntu1) ... Setting up libglx-mesa0:ppc64el (23.3.0-2ubuntu3) ... Setting up libpangoxft-1.0-0:ppc64el (1.51.0+ds-3) ... Setting up libxi6:ppc64el (2:1.8-1build1) ... Setting up libglx0:ppc64el (1.7.0-1) ... Setting up libxtst6:ppc64el (2:1.2.3-1.1) ... Setting up libtk8.6:ppc64el (8.6.13-2) ... Setting up libxcursor1:ppc64el (1:1.2.1-1) ... Setting up pango1.0-tools (1.51.0+ds-3) ... Setting up debhelper (13.11.8ubuntu1) ... Setting up libxaw7:ppc64el (2:1.0.14-1) ... Setting up libxss-dev:ppc64el (1:1.2.3-1build2) ... Setting up gir1.2-harfbuzz-0.0:ppc64el (8.0.1-1) ... Setting up gir1.2-pango-1.0:ppc64el (1.51.0+ds-3) ... Setting up libgl1:ppc64el (1.7.0-1) ... Setting up libglib2.0-dev:ppc64el (2.78.3-1) ... Setting up libxt-dev:ppc64el (1:1.2.1-1.1) ... Setting up openjdk-17-jre-headless:ppc64el (17.0.9+9-2) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-ppc64el/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-ppc64el/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-ppc64el/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-ppc64el/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-ppc64el/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up texlive-binaries (2023.20230311.66589-8) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up libcairo2-dev:ppc64el (1.18.0-1) ... Setting up texlive-base (2023.20231207-1) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up libxft-dev:ppc64el (2.3.6-1) ... Setting up tk8.6 (8.6.13-2) ... Setting up libharfbuzz-dev:ppc64el (8.0.1-1) ... Setting up texlive-luatex (2023.20231207-1) ... Setting up x11-xkb-utils (7.7+8) ... Setting up texlive-plain-generic (2023.20231207-3) ... Setting up texlive-latex-base (2023.20231207-1) ... Setting up texlive-extra-utils (2023.20231207-3) ... Setting up texlive-fonts-extra (2023.20231207-3) ... Setting up libpango1.0-dev:ppc64el (1.51.0+ds-3) ... Setting up texlive-latex-recommended (2023.20231207-1) ... Setting up texlive-pictures (2023.20231207-1) ... Setting up tk8.6-dev:ppc64el (8.6.13-2) ... Setting up texlive-fonts-recommended (2023.20231207-1) ... Setting up xserver-common (2:21.1.10-1ubuntu1) ... Setting up xvfb (2:21.1.10-1ubuntu1) ... Setting up texlive-latex-extra (2023.20231207-3) ... Setting up adwaita-icon-theme (41.0-1ubuntu1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libgtk2.0-0:ppc64el (2.24.33-2ubuntu2) ... Setting up humanity-icon-theme (0.6.16) ... Setting up ubuntu-mono (20.10-0ubuntu2) ... Processing triggers for systemd (255-1ubuntu1) ... Processing triggers for libc-bin (2.38-3ubuntu1) ... Processing triggers for ca-certificates-java (20230710) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068_2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:E-Tugra_Global_Root_CA_ECC_v3.pem Adding debian:E-Tugra_Global_Root_CA_RSA_v3.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_FÅ‘tanúsítvány.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_RootCA3.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up openjdk-17-jdk-headless:ppc64el (17.0.9+9-2) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-ppc64el/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-ppc64el/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-ppc64el/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-ppc64el/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-ppc64el/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-ppc64el/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-ppc64el/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-ppc64el/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-ppc64el/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-ppc64el/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-ppc64el/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-ppc64el/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-ppc64el/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-ppc64el/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-ppc64el/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-ppc64el/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-ppc64el/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-ppc64el/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-ppc64el/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-ppc64el/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-ppc64el/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-ppc64el/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-ppc64el/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up default-jre-headless (2:1.17-75) ... Setting up openjdk-17-jre:ppc64el (17.0.9+9-2) ... Setting up default-jre (2:1.17-75) ... Setting up openjdk-17-jdk:ppc64el (17.0.9+9-2) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-ppc64el/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode Setting up default-jdk-headless (2:1.17-75) ... Setting up default-jdk (2:1.17-75) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for tex-common (6.18) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (ppc64el included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-169-generic #187-Ubuntu SMP Thu Nov 23 14:52:15 UTC 2023 ppc64el (ppc64le) Toolchain package versions: binutils_2.41.50.20231214-1ubuntu1 dpkg-dev_1.22.1ubuntu5 g++-13_13.2.0-9ubuntu1 gcc-13_13.2.0-9ubuntu1 libc6-dev_2.38-3ubuntu1 libstdc++-13-dev_13.2.0-9ubuntu1 libstdc++6_13.2.0-9ubuntu1 linux-libc-dev_6.6.0-14.14 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 adwaita-icon-theme_41.0-1ubuntu1 apt_2.7.7 apt-utils_2.7.7 at-spi2-common_2.50.0-1 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13ubuntu5 base-passwd_3.6.3 bash_5.2.21-2ubuntu1 bash-completion_1:2.11-8 binutils_2.41.50.20231214-1ubuntu1 binutils-common_2.41.50.20231214-1ubuntu1 binutils-powerpc64le-linux-gnu_2.41.50.20231214-1ubuntu1 bison_2:3.8.2+dfsg-1build1 bsdextrautils_2.39.2-6ubuntu1 bsdutils_1:2.39.2-6ubuntu1 build-essential_12.10ubuntu1 bzip2_1.0.8-5build1 ca-certificates_20230311ubuntu1 ca-certificates-java_20230710 coreutils_9.4-2ubuntu1 cpp_4:13.2.0-2ubuntu1 cpp-13_13.2.0-9ubuntu1 dash_0.5.12-6ubuntu1 debconf_1.5.82 debconf-i18n_1.5.82 debhelper_13.11.8ubuntu1 debianutils_5.14 debugedit_1:5.0-5 default-jdk_2:1.17-75 default-jdk-headless_2:1.17-75 default-jre_2:1.17-75 default-jre-headless_2:1.17-75 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.1ubuntu5 dpkg-dev_1.22.1ubuntu5 dwz_0.15-1 e2fsprogs_1.47.0-2ubuntu1 fakeroot_1.32.2-1 file_1:5.45-2 findutils_4.9.0-5 fontconfig_2.14.2-6ubuntu1 fontconfig-config_2.14.2-6ubuntu1 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 fonts-lmodern_2.005-1 g++_4:13.2.0-2ubuntu1 g++-13_13.2.0-9ubuntu1 gcc_4:13.2.0-2ubuntu1 gcc-13_13.2.0-9ubuntu1 gcc-13-base_13.2.0-9ubuntu1 gettext_0.21-14 gettext-base_0.21-14 gfortran_4:13.2.0-2ubuntu1 gfortran-13_13.2.0-9ubuntu1 gir1.2-freedesktop_1.78.1-5 gir1.2-glib-2.0_1.78.1-5 gir1.2-harfbuzz-0.0_8.0.1-1 gir1.2-pango-1.0_1.51.0+ds-3 gpg_2.2.40-1.1ubuntu1 gpg-agent_2.2.40-1.1ubuntu1 gpgconf_2.2.40-1.1ubuntu1 gpgv_2.2.40-1.1ubuntu1 grep_3.11-3 groff-base_1.23.0-3 gtk-update-icon-cache_3.24.38-5ubuntu2 gzip_1.12-1ubuntu1 hicolor-icon-theme_0.17-2 hostname_3.23+nmu1ubuntu1 humanity-icon-theme_0.6.16 icu-devtools_74.2-1ubuntu1 init_1.66ubuntu1 init-system-helpers_1.66ubuntu1 intltool-debian_0.35.0+20060710.6 java-common_0.75 krb5-locales_1.20.1-5build1 libacl1_2.3.1-3 libapache-pom-java_29-2 libapparmor1_4.0.0~alpha2-0ubuntu7 libapt-pkg6.0_2.7.7 libarchive-zip-perl_1.68-1 libargon2-1_0~20190702+dfsg-4 libasan8_13.2.0-9ubuntu1 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xfonts-utils_1:7.7+6build2 xkb-data_2.38-2 xorg-sgml-doctools_1:1.11-1.1 xserver-common_2:21.1.10-1ubuntu1 xtrans-dev_1.4.0-1 xvfb_2:21.1.10-1ubuntu1 xz-utils_5.4.5-0.1 zlib1g_1:1.3.dfsg-3ubuntu1 zlib1g-dev_1:1.3.dfsg-3ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-base Binary: r-base, r-base-core, r-base-dev, r-mathlib, r-base-html, r-doc-pdf, r-doc-html, r-doc-info, r-recommended Architecture: any all Version: 4.3.2-1build1 Maintainer: Dirk Eddelbuettel Homepage: http://www.r-project.org/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/edd/r-base Vcs-Git: https://salsa.debian.org/edd/r-base.git Build-Depends: gcc (>= 4:4.9.2-2), g++ (>= 4:4.9.2-2), gfortran (>= 4:4.9.2-2), libblas-dev, liblapack-dev, tcl8.6-dev, tk8.6-dev, bison, 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---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-27575133 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-27575133 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-27575133 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package r-base dpkg-buildpackage: info: source version 4.3.2-1build1 dpkg-buildpackage: info: source distribution noble dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el fakeroot debian/rules clean *** clean *** dh_testdir dh_testroot rm -f configure-stamp \ build-stamp build-indep-stamp build-arch-stamp \ make-stamp make-arch-stamp make-indep-stamp \ install-indep-stamp install-arch-stamp \ check-stamp [ ! -f Makefile ] || /usr/bin/make distclean rm -f `find . -name "*~"` rm -rf debian/tmp debian/files debian/files* core debian/substvars debian/files rm -f doc/html/function.html doc/html/packages.html rm -f modules/*.so src/unix/Rscript dh_clean debian/rules build-arch *** configure *** #automake #autoconf dh_testdir R_SHELL=/bin/bash \ mkdir_p="/bin/mkdir -p" \ MKDIR_P="/bin/mkdir -p" \ R_TEXI2DVICMD=emulation \ R_PAPERSIZE=letter \ R_BROWSER=xdg-open \ R_BZIPCMD=/bin/bzip2 \ R_GZIPCMD="/bin/gzip -n" \ PAGER=/usr/bin/pager \ PERL=/usr/bin/perl \ JAVA_HOME=/usr/lib/jvm/default-java \ R_UNZIPCMD=/usr/bin/unzip \ R_ZIPCMD=/usr/bin/zip \ R_PRINTCMD=/usr/bin/lpr \ TAR=/bin/tar \ LIBnn=lib \ AWK=/usr/bin/awk \ DD=/bin/dd \ GREP=/bin/grep \ FGREP="/bin/grep -F" \ EGREP="/bin/grep -E" \ SED=/bin/sed \ GETWD="/bin/pwd" \ CC=gcc \ CXX=g++ \ F77=gfortran \ FC=gfortran \ CFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CFLAGS` -Wdate-time -D_FORTIFY_SOURCE=3" \ CXXFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CFLAGS` -Wdate-time -D_FORTIFY_SOURCE=3" \ FFLAGS="-g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1" \ FCFLAGS="-g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1" \ CPPFLAGS= \ LDFLAGS="-Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro" \ FLIBS= \ rsharedir=/usr/share/R/share \ rincludedir=/usr/share/R/include \ rdocdir=/usr/share/R/doc \ ./configure --prefix=/usr \ --with-cairo \ --with-jpeglib \ --with-readline \ --with-tcltk \ --mandir=/usr/share/man \ --infodir=/usr/share/info \ --datadir=/usr/share/R/share \ --includedir=/usr/share/R/include \ --with-blas \ --with-lapack \ --disable-long-double \ --enable-R-profiling \ --enable-R-shlib \ --enable-memory-profiling \ --without-recommended-packages \ --build powerpc64le-linux-gnu checking build system type... powerpc64le-unknown-linux-gnu checking host system type... powerpc64le-unknown-linux-gnu loading site script './config.site' loading build-specific script './config.site' checking for pwd... /bin/pwd checking whether builddir is srcdir... yes checking whether ln -s works... yes checking for ar... ar checking for a BSD-compatible install... /usr/bin/install -c checking for sed... /bin/sed checking for which... /usr/bin/which checking for /usr/bin/pager... /usr/bin/pager checking for /bin/tar... /bin/tar checking for tex... /usr/bin/tex checking for pdftex... /usr/bin/pdftex checking for pdflatex... /usr/bin/pdflatex checking for makeindex... /usr/bin/makeindex checking for texi2any... /usr/bin/texi2any checking whether texi2any version is at least 5.1... yes checking for ginstall-info... no checking for install-info... no checking for texi2dvi... /usr/bin/texi2dvi checking for kpsewhich... /usr/bin/kpsewhich checking for latex inconsolata package... found zi4.sty checking for unzip... /usr/bin/unzip checking for zip... /usr/bin/zip checking for gzip... /bin/gzip -n checking for bzip2... /bin/bzip2 using default browser ... xdg-open checking for xdg-open... /usr/bin/xdg-open checking for working aclocal... found checking for working autoconf... found checking for working autoheader... found checking for bison... bison -y checking for notangle... false checking for realpath... /usr/bin/realpath checking for pkg-config... /usr/bin/pkg-config checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking whether gcc needs -traditional... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for wchar.h... yes checking for minix/config.h... no checking for sys/time.h... yes checking for sys/param.h... yes checking whether it is safe to define __EXTENSIONS__... yes checking whether _XOPEN_SOURCE should be defined... no checking how to run the C preprocessor... gcc -E looking for a modern Fortran compiler checking whether the compiler supports GNU Fortran... yes checking whether gfortran accepts -g... yes checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking whether g++ -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 can compile C++ code... yes checking how to run the C++ preprocessor... g++ -E checking whether __attribute__((visibility())) is supported... yes checking whether gcc accepts -fvisibility... yes checking whether g++ accepts -fvisibility... yes checking whether gfortran accepts -fvisibility... yes checking for gcc... gcc checking whether the compiler supports GNU Objective C... no checking whether gcc accepts -g... no checking whether g++ can compile ObjC++... no checking whether can compile ObjC++... no checking for Objective C++ compiler... no working ObjC++ compiler found checking whether gcc -std=gnu17 is a C17 compiler... yes checking whether gcc -std=gnu23 is a C23 compiler... no checking whether gcc -std=gnu2x is a C23 compiler... yes checking whether gcc -std=gnu90 is a C90 compiler... yes checking whether gcc -std=gnu99 is a C99 compiler... yes checking how to print strings... printf checking for a sed that does not truncate output... (cached) /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert powerpc64le-unknown-linux-gnu file names to powerpc64le-unknown-linux-gnu format... func_convert_file_noop checking how to convert powerpc64le-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking for gawk... /usr/bin/awk checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for cos in -lm... yes checking for sin in -lm... yes checking for dlopen in -ldl... yes checking for readline/history.h... yes checking for readline/readline.h... yes checking for rl_callback_read_char in -lreadline... yes checking for history_truncate_file... yes checking for tilde_expand_word... yes checking whether rl_completion_matches exists and is declared... yes checking whether rl_resize_terminal exists and is declared... yes checking whether rl_sort_completion_matches exists and is declared... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for sys/wait.h that is POSIX.1 compatible... yes checking for dlfcn.h... (cached) yes checking for fcntl.h... yes checking for glob.h... yes checking for grp.h... yes checking for pwd.h... yes checking for sched.h... yes checking for strings.h... (cached) yes checking for sys/resource.h... yes checking for sys/select.h... yes checking for sys/socket.h... yes checking for sys/stat.h... (cached) yes checking for sys/time.h... (cached) yes checking for sys/times.h... yes checking for sys/utsname.h... yes checking for unistd.h... (cached) yes checking for utime.h... yes checking for arpa/inet.h... yes checking for elf.h... yes checking for features.h... yes checking for floatingpoint.h... no checking for langinfo.h... yes checking for netdb.h... yes checking for netinet/in.h... yes checking for sys/param.h... (cached) yes checking for stdalign.h... yes checking for errno.h... yes checking for inttypes.h... (cached) yes checking for limits.h... yes checking for locale.h... yes checking for stdarg.h... yes checking for stdbool.h... yes checking for stdint.h... (cached) yes checking for string.h... (cached) yes checking for gcc options needed to detect all undeclared functions... none needed checking whether setjmp.h is POSIX.1 compatible... yes checking whether sigsetjmp is declared... yes checking whether siglongjmp is declared... yes checking for GNU C library with version >= 2... yes checking for uint64_t... yes checking for int64_t... yes checking for int_fast64_t... yes checking for pid_t... yes checking for size_t... yes checking whether SIZE_MAX is declared... yes checking for blkcnt_t... yes checking for type of socket length... socklen_t * checking for stack_t... yes checking for intptr_t... yes checking for uintptr_t... yes checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for inline... inline checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of double... 8 checking size of size_t... 8 checking for C stack direction... down configure: WARNING: Not using the 'long double' type checking whether we can compute C Make dependencies... yes, using $(CC) -MM checking whether gcc supports -c -o FILE.lo... yes checking for gcc option to support OpenMP... -fopenmp checking how to get verbose linking output from gfortran... -v checking for Fortran libraries of gfortran... -L/usr/lib/gcc/powerpc64le-linux-gnu/13 -L/usr/lib/gcc/powerpc64le-linux-gnu/13/../../../powerpc64le-linux-gnu -L/usr/lib/gcc/powerpc64le-linux-gnu/13/../../../../lib -L/lib/powerpc64le-linux-gnu -L/lib/../lib -L/usr/lib/powerpc64le-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/powerpc64le-linux-gnu/13/../../.. -lgfortran -lm -lquadmath checking how to get verbose linking output from gcc... -v checking for C libraries of gcc... -L/usr/lib/gcc/powerpc64le-linux-gnu/13 -L/usr/lib/gcc/powerpc64le-linux-gnu/13/../../../powerpc64le-linux-gnu -L/usr/lib/gcc/powerpc64le-linux-gnu/13/../../../../lib -L/lib/powerpc64le-linux-gnu -L/lib/../lib -L/usr/lib/powerpc64le-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/powerpc64le-linux-gnu/13/../../.. -lgcc_s checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking whether gfortran appends underscores to external names... yes checking whether gfortran appends extra underscores to external names... no checking whether mixed C/Fortran code can be run... yes checking whether gfortran and gcc agree on int and double... yes checking whether gfortran and gcc agree on double complex... yes checking for gfortran option to support OpenMP... -fopenmp checking whether g++ accepts -M for generating dependencies... yes checking whether we can compute ObjC Make dependencies... no checking for type of 'hidden' Fortran character lengths... size_t checking for xmkmf... no checking whether g++ supports C++11 features with -std=gnu++11... yes checking whether g++ supports C++14 features with -std=gnu++14... yes checking whether g++ supports C++17 features with -std=gnu++17... yes checking whether g++ supports C++20 features with -std=gnu++20... yes checking whether g++ supports C++23 features with -std=gnu++23... yes checking for g++ -std=gnu++17 option to support OpenMP... -fopenmp checking for option providing pthread_kill... none required checking whether POSIX threads are supported... yes checking for off_t... yes checking for working alloca.h... yes checking for alloca... yes checking whether alloca is declared... yes checking whether expm1 exists and is declared... yes checking whether hypot exists and is declared... yes checking whether log1p exists and is declared... yes checking whether log1pl exists and is declared... yes checking whether log2 exists and is declared... yes checking whether log10 exists and is declared... yes checking whether nearbyint exists and is declared... yes checking whether nearbyintl exists and is declared... yes checking whether powl exists and is declared... yes checking whether rintl exists and is declared... yes checking whether va_copy exists and is declared... yes checking for isblank... yes checking for sunmath.h... no checking for cospi in -lsunmath... no checking for atanpi... no checking for atan2pi... no checking for cospi... no checking for exp10... yes checking for pown... no checking for sinpi... no checking for tanpi... no checking for __cospi... no checking for __sinpi... no checking for __tanpi... no checking for fseeko... yes checking for ftello... yes checking for matherr... no checking whether fcntl exists and is declared... yes checking whether getgrgid exists and is declared... yes checking whether getpwnam exists and is declared... yes checking whether getpwuid exists and is declared... yes checking whether kill exists and is declared... yes checking whether sigaction exists and is declared... yes checking whether sigaltstack exists and is declared... yes checking whether sigemptyset exists and is declared... yes checking whether fdopen exists and is declared... yes checking whether popen exists and is declared... yes checking whether getline exists and is declared... yes checking whether select exists and is declared... yes checking whether setenv exists and is declared... yes checking whether unsetenv exists and is declared... yes checking whether getrlimit exists and is declared... yes checking whether setrlimit exists and is declared... yes checking whether getrusage exists and is declared... yes checking whether getpriority exists and is declared... yes checking whether chmod exists and is declared... yes checking whether mkfifo exists and is declared... yes checking whether stat exists and is declared... yes checking whether umask exists and is declared... yes checking whether gettimeofday exists and is declared... yes checking whether utimes exists and is declared... yes checking whether times exists and is declared... yes checking whether gmtime_r exists and is declared... yes checking whether localtime_r exists and is declared... yes checking whether nl_langinfo exists and is declared... yes checking whether access exists and is declared... yes checking whether chdir exists and is declared... yes checking whether execv exists and is declared... yes checking whether ftruncate exists and is declared... yes checking whether getcwd exists and is declared... yes checking whether geteuid exists and is declared... yes checking whether getuid exists and is declared... yes checking whether link exists and is declared... yes checking whether readlink exists and is declared... yes checking whether symlink exists and is declared... yes checking whether sysconf exists and is declared... yes checking whether sched_setaffinity exists and is declared... yes checking whether sched_getaffinity exists and is declared... yes checking whether utime exists and is declared... yes checking whether utimensat exists and is declared... yes checking for clock_gettime in -lrt... yes checking whether clock_gettime exists and is declared... yes checking whether timespec_get exists and is declared... yes checking for putenv... yes checking whether putenv is declared... yes checking for vasprintf... yes checking whether vasprintf is declared... yes checking for mempcpy... yes checking for realpath... yes checking whether realpath is declared... yes checking whether glob exists and is declared... yes checking for dladdr... yes checking for dlsym... yes checking whether dladdr is declared... yes checking whether dlsym is declared... yes checking whether RTLD_DEFAULT is declared... yes checking whether RTLD_NEXT is declared... yes checking for thread.h... no checking whether thr_stksegment exists and is declared... no checking for isnan... yes checking whether isfinite is declared... yes checking whether isnan is declared... yes checking whether you have IEEE 754 floating-point arithmetic... yes checking whether putenv("FOO") can unset an environment variable... yes checking whether putenv("FOO=") can unset an environment variable... no checking for nl_langinfo and CODESET... yes checking for mkdtemp... yes checking for strdup... yes checking for strncasecmp... yes checking whether mkdtemp is declared... yes checking whether strdup is declared... yes checking whether strncasecmp is declared... yes checking for library containing connect... none required checking for library containing gethostbyname... none required checking for library containing xdr_string... -ltirpc checking for working calloc... yes checking for working isfinite... yes checking for working log1p... yes checking whether ftell works correctly on files opened for append... yes checking for working sigaction... yes checking whether mktime, gmtime, localtime work correctly in 2020... yes checking whether mktime sets errno... yes checking whether mktime works correctly after 2037... yes checking whether mktime works correctly before 1902... yes checking whether mktime works correctly in 1969... yes checking for complex.h... yes checking for double complex... yes checking whether C99 double complex is supported... yes checking whether cabs exists and is declared... yes checking whether carg exists and is declared... yes checking whether cexp exists and is declared... yes checking whether clog exists and is declared... yes checking whether csqrt exists and is declared... yes checking whether cpow exists and is declared... yes checking whether ccos exists and is declared... yes checking whether csin exists and is declared... yes checking whether ctan exists and is declared... yes checking whether cacos exists and is declared... yes checking whether casin exists and is declared... yes checking whether catan exists and is declared... yes checking whether ccosh exists and is declared... yes checking whether csinh exists and is declared... yes checking whether ctanh exists and is declared... yes checking for working ctanh... yes checking whether 'struct tm' includes tm_zone... yes checking whether 'struct tm' includes tm_gmtoff... yes configure: searching for an external BLAS configure: searching for BLAS in default libraries checking for dgemm_... no configure: searching for OpenBLAS checking for sgemm_ in -lopenblas... no configure: searching for BLIS checking for sgemm_ in -lblis... no configure: searching for ATLAS checking for ATL_xerbla in -latlas... no configure: searching for PhiPACK checking for dgemm_ in -lblas... yes checking for dgemm_ in -ldgemm... no configure: searching for IBM ESSL checking for dgemm_ in -lblas... (cached) yes checking for dgemm_ in -lessl... no configure: searching for generic BLAS library checking for dgemm_ in -lblas... (cached) yes checking whether double complex BLAS can be used... yes checking whether the BLAS is complete... yes checking for dpstrf_... no checking for dpstrf_ in -llapack... yes checking for iconv.h... yes checking for iconv... yes checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes checking whether iconv accepts "CP1252"... yes checking for iconvlist... no checking for iconv... yes checking for iconv declaration... extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for wchar.h... (cached) yes checking for wctype.h... yes checking whether mbrtowc exists and is declared... yes checking whether wcrtomb exists and is declared... yes checking whether wcscoll exists and is declared... yes checking whether wcsftime exists and is declared... yes checking whether wcstod exists and is declared... yes checking whether mbstowcs exists and is declared... yes checking whether wcstombs exists and is declared... yes checking whether wctrans exists and is declared... yes checking whether wctype exists and is declared... yes checking whether iswctype exists and is declared... yes checking whether wcwidth exists and is declared... yes checking whether wcswidth exists and is declared... yes checking for wctrans_t... yes checking for mbstate_t... yes checking for ICU... yes checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking for X11/Intrinsic.h... yes checking for XtToolkitInitialize in -lXt... yes using X11 ... yes checking for KeySym... yes checking for X11/Xmu/Atoms.h... no checking whether pkg-config knows about cairo and pango... yes checking whether cairo including pango is >= 1.2 and works... yes checking for tclConfig.sh... no checking for tclConfig.sh in library (sub)directories... /usr/lib/tcl8.6/tclConfig.sh checking for tkConfig.sh... no checking for tkConfig.sh in library (sub)directories... /usr/lib/tk8.6/tkConfig.sh checking for tcl.h... yes checking for tk.h... yes checking whether compiling/linking Tcl/Tk code works... yes checking for BSD networking... yes checking for rpc/types.h... no checking for tirpc/rpc/types.h... yes checking for tirpc/rpc/xdr.h... yes checking for XDR support... yes checking for inflateInit2_ in -lz... yes checking for zlib.h... yes checking if zlib version >= 1.2.5... yes checking whether zlib support suffices... yes checking for BZ2_bzlibVersion in -lbz2... yes checking for bzlib.h... yes checking if bzip2 version >= 1.0.6... yes checking whether bzip2 support suffices... yes checking for lzma_version_number in -llzma... yes checking for lzma.h... yes checking if lzma version >= 5.0.3... yes checking for pcre2.h... yes checking for pcre2_compile_8 in -lpcre2-8... yes checking if PCRE2 has Unicode support... yes checking whether PCRE support suffices... yes checking for curl-config... /usr/bin/curl-config checking libcurl version ... 8.4.0 checking for curl/curl.h... yes checking if libcurl is >= 7.28.0... yes checking if libcurl supports https... yes checking if pkg-config knows about libjpeg... yes checking if jpeglib version >= 6b... yes checking for jpeg_destroy_compress in -ljpeg... yes checking if pkg-config knows about libpng... yes checking if libpng version >= 1.2.7... yes checking for png_create_write_struct in -lpng... yes checking if pkg-config knows about libtiff... yes checking for tiffio.h... yes checking for TIFFOpen in -ltiff... yes checking whether leap seconds are treated according to POSIX... yes checking for inline... inline checking for struct stat.st_atim.tv_nsec... yes checking whether struct stat.st_atim is of type struct timespec... yes checking for setitimer... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for _LARGEFILE_SOURCE value needed for large files... no checking whether KERN_USRSTACK sysctl is supported... no checking for visible __lib_stack_end... yes checking for paperconf... /usr/bin/paperconf checking for Fortran flag to compile .f90 files... none checking for Fortran flag to compile .f95 files... none checking for gfortran option to support OpenMP... (cached) -fopenmp checking whether NLS is requested... yes Configuring src/extra/intl directory checking for a race-free mkdir -p... /bin/mkdir -p checking whether we are using the GNU C Library 2 or newer... yes checking for ranlib... (cached) ranlib checking for simple visibility declarations... yes checking for stdint.h... yes checking for getpagesize... yes checking for working mmap... yes checking whether integer division by zero raises SIGFPE... no checking for inttypes.h... yes checking for unsigned long long int... yes checking for inttypes.h... (cached) yes checking whether the inttypes.h PRIxNN macros are broken... no checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for shared library run path origin... done checking whether imported symbols can be declared weak... yes checking for multithread API to use... none checking for argz.h... yes checking for inttypes.h... (cached) yes checking for limits.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... (cached) yes checking for getcwd... yes checking for getegid... yes checking for geteuid... yes checking for getgid... yes checking for getuid... yes checking for mempcpy... (cached) yes checking for munmap... yes checking for stpcpy... yes checking for strcasecmp... yes checking for strdup... (cached) yes checking for strtoul... yes checking for tsearch... yes checking for argz_count... yes checking for argz_stringify... yes checking for argz_next... yes checking for __fsetlocking... yes checking whether feof_unlocked is declared... yes checking whether fgets_unlocked is declared... yes checking for iconv... (cached) yes checking for iconv declaration... (cached) extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for NL_LOCALE_NAME macro... yes checking for bison... bison checking version of bison... 3.8.2, ok checking for long long int... yes checking for long double... yes checking for wchar_t... yes checking for wint_t... yes checking for intmax_t... yes checking whether printf() supports POSIX/XSI format strings... yes checking whether we are using the GNU C Library 2.1 or newer... yes checking for stdint.h... (cached) yes checking for SIZE_MAX... yes checking for stdint.h... (cached) yes checking for CFPreferencesCopyAppValue... no checking for CFLocaleCopyCurrent... no checking for ptrdiff_t... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for asprintf... yes checking for fwprintf... yes checking for putenv... (cached) yes checking for setenv... yes checking for setlocale... yes checking for snprintf... yes checking for wcslen... yes checking whether _snprintf is declared... no checking whether _snwprintf is declared... no checking whether getc_unlocked is declared... yes checking for nl_langinfo and CODESET... (cached) yes checking for LC_MESSAGES... yes checking for CFPreferencesCopyAppValue... (cached) no checking for CFLocaleCopyCurrent... (cached) no checking whether included gettext is requested... no checking for GNU gettext in libc... yes checking whether to use NLS... yes checking where the gettext function comes from... libc Finished configuring src/extra/intl directory checking whether OpenMP SIMD reduction is supported... yes using as R_SHELL for scripts ... /bin/bash configure: creating ./config.status config.status: creating Makeconf config.status: creating Makefile config.status: creating doc/Makefile config.status: creating doc/html/Makefile config.status: creating doc/manual/Makefile config.status: creating etc/Makefile config.status: creating etc/Makeconf config.status: creating etc/Renviron config.status: creating etc/javaconf config.status: creating etc/ldpaths config.status: creating m4/Makefile config.status: creating po/Makefile config.status: creating share/Makefile config.status: creating src/Makefile config.status: creating src/appl/Makefile config.status: creating src/extra/Makefile config.status: creating src/extra/blas/Makefile config.status: creating src/extra/intl/Makefile config.status: creating src/extra/tre/Makefile config.status: creating src/extra/tzone/Makefile config.status: creating src/extra/xdr/Makefile config.status: creating src/include/Makefile config.status: creating src/include/Rmath.h0 config.status: creating src/include/R_ext/Makefile config.status: creating src/library/Recommended/Makefile config.status: creating src/library/Makefile config.status: creating src/library/base/DESCRIPTION config.status: creating src/library/base/Makefile config.status: creating src/library/compiler/DESCRIPTION config.status: creating src/library/compiler/Makefile config.status: creating src/library/datasets/DESCRIPTION config.status: creating src/library/datasets/Makefile config.status: creating src/library/graphics/DESCRIPTION config.status: creating src/library/graphics/Makefile config.status: creating src/library/graphics/src/Makefile config.status: creating src/library/grDevices/DESCRIPTION config.status: creating src/library/grDevices/Makefile config.status: creating src/library/grDevices/src/Makefile config.status: creating src/library/grDevices/src/cairo/Makefile config.status: creating src/library/grid/DESCRIPTION config.status: creating src/library/grid/Makefile config.status: creating src/library/grid/src/Makefile config.status: creating src/library/methods/DESCRIPTION config.status: creating src/library/methods/Makefile config.status: creating src/library/methods/src/Makefile config.status: creating src/library/parallel/DESCRIPTION config.status: creating src/library/parallel/Makefile config.status: creating src/library/parallel/src/Makefile config.status: creating src/library/profile/Makefile config.status: creating src/library/stats/DESCRIPTION config.status: creating src/library/stats/Makefile config.status: creating src/library/stats/src/Makefile config.status: creating src/library/stats4/DESCRIPTION config.status: creating src/library/stats4/Makefile config.status: creating src/library/splines/DESCRIPTION config.status: creating src/library/splines/Makefile config.status: creating src/library/splines/src/Makefile config.status: creating src/library/tcltk/DESCRIPTION config.status: creating src/library/tcltk/Makefile config.status: creating src/library/tcltk/src/Makefile config.status: creating src/library/tools/DESCRIPTION config.status: creating src/library/tools/Makefile config.status: creating src/library/tools/src/Makefile config.status: creating src/library/translations/DESCRIPTION config.status: creating src/library/translations/Makefile config.status: creating src/library/utils/DESCRIPTION config.status: creating src/library/utils/Makefile config.status: creating src/library/utils/src/Makefile config.status: creating src/main/Makefile config.status: creating src/modules/Makefile config.status: creating src/modules/X11/Makefile config.status: creating src/modules/internet/Makefile config.status: creating src/modules/lapack/Makefile config.status: creating src/nmath/Makefile config.status: creating src/nmath/standalone/Makefile config.status: creating src/scripts/Makefile config.status: creating src/scripts/R.sh config.status: creating src/scripts/Rcmd config.status: creating src/scripts/javareconf config.status: creating src/scripts/mkinstalldirs config.status: creating src/scripts/pager config.status: creating src/scripts/rtags config.status: creating src/unix/Makefile config.status: creating tests/Makefile config.status: creating tests/Embedding/Makefile config.status: creating tests/Examples/Makefile config.status: creating tools/Makefile config.status: creating src/include/config.h config.status: executing libtool commands config.status: executing stamp-h commands R is now configured for powerpc64le-unknown-linux-gnu Source directory: . Installation directory: /usr C compiler: gcc -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 Fortran fixed-form compiler: gfortran -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 Default C++ compiler: g++ -std=gnu++17 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 C++11 compiler: g++ -std=gnu++11 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 C++14 compiler: g++ -std=gnu++14 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 C++17 compiler: g++ -std=gnu++17 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 C++20 compiler: g++ -std=gnu++20 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 C++23 compiler: g++ -std=gnu++23 -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 Fortran free-form compiler: gfortran -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 Obj-C compiler: Interfaces supported: X11, tcltk External libraries: pcre2, readline, BLAS(generic), LAPACK(generic), curl Additional capabilities: PNG, JPEG, TIFF, NLS, cairo, ICU Options enabled: shared R library, R profiling, memory profiling Capabilities skipped: Options not enabled: shared BLAS Recommended packages: no touch configure-stamp *** make-arch *** /usr/bin/make CFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CFLAGS` -Wdate-time -D_FORTIFY_SOURCE=3" \ CXXFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CFLAGS` -Wdate-time -D_FORTIFY_SOURCE=3" \ FFLAGS="-g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1" \ FCFLAGS="-g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1" \ CC=gcc \ CXX=g++ \ F77=gfortran \ LDFLAGS="-Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro" \ PKG_BUILT_STAMP="""" \ R_GZIPCMD="/bin/gzip -n" \ R make[1]: Entering directory '/<>' make[2]: Entering directory '/<>/m4' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/<>/m4' make[2]: Entering directory '/<>/tools' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/<>/tools' make[2]: Entering directory '/<>/doc' make[3]: Entering directory '/<>/doc/html' make[3]: Leaving directory '/<>/doc/html' make[3]: Entering directory '/<>/doc/manual' make[3]: Nothing to be done for 'R'. make[3]: Leaving directory '/<>/doc/manual' make[2]: Leaving directory '/<>/doc' make[2]: Entering directory '/<>/etc' make[2]: Leaving directory '/<>/etc' make[2]: Entering directory '/<>/share' make[2]: Leaving directory '/<>/share' make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src/scripts' creating src/scripts/R.fe make[4]: Entering directory '/<>/src/scripts' mkdir -p -- ../../bin make[4]: Leaving directory '/<>/src/scripts' make[3]: Leaving directory '/<>/src/scripts' make[3]: Entering directory '/<>/src/include' mkdir -p -- ../../include make[4]: Entering directory '/<>/src/include/R_ext' mkdir -p -- ../../../include/R_ext make[4]: Leaving directory '/<>/src/include/R_ext' make[3]: Leaving directory '/<>/src/include' make[3]: Entering directory '/<>/src/extra' make[4]: Entering directory '/<>/src/extra/tre' make[5]: Entering directory '/<>/src/extra/tre' making regcomp.d from regcomp.c making regerror.d from regerror.c making regexec.d from regexec.c making tre-ast.d from tre-ast.c making tre-compile.d from tre-compile.c making tre-match-approx.d from tre-match-approx.c making tre-match-backtrack.d from tre-match-backtrack.c making tre-match-parallel.d from tre-match-parallel.c making tre-mem.d from tre-mem.c making tre-parse.d from tre-parse.c making tre-stack.d from tre-stack.c make[5]: Leaving directory '/<>/src/extra/tre' make[5]: Entering directory '/<>/src/extra/tre' gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fvisibility=hidden -c regcomp.c -o regcomp.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fvisibility=hidden -c regerror.c -o regerror.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fvisibility=hidden -c regexec.c -o regexec.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fvisibility=hidden -c tre-ast.c -o tre-ast.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fvisibility=hidden -c tre-compile.c -o tre-compile.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fvisibility=hidden -c tre-match-approx.c -o tre-match-approx.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fvisibility=hidden -c tre-match-backtrack.c -o tre-match-backtrack.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fvisibility=hidden -c tre-match-parallel.c -o tre-match-parallel.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fvisibility=hidden -c tre-mem.c -o tre-mem.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fvisibility=hidden -c tre-parse.c -o tre-parse.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fvisibility=hidden -c tre-stack.c -o tre-stack.o ar -cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o ranlib libtre.a make[5]: Leaving directory '/<>/src/extra/tre' make[4]: Leaving directory '/<>/src/extra/tre' make[3]: Leaving directory '/<>/src/extra' make[3]: Entering directory '/<>/src/appl' making integrate.d from integrate.c making interv.d from interv.c making maxcol.d from maxcol.c making optim.d from optim.c making pretty.d from pretty.c making uncmin.d from uncmin.c make[4]: Entering directory '/<>/src/appl' gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c integrate.c -o integrate.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c interv.c -o interv.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c maxcol.c -o maxcol.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c optim.c -o optim.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c pretty.c -o pretty.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c uncmin.c -o uncmin.o gfortran -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -c dchdc.f -o dchdc.o gfortran -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -c dpbfa.f -o dpbfa.o gfortran -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -c dpbsl.f -o dpbsl.o gfortran -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -c dpoco.f -o dpoco.o gfortran -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -c dpodi.f -o dpodi.o gfortran -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -c dpofa.f -o dpofa.o gfortran -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -c dposl.f -o dposl.o gfortran -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -c dqrdc.f -o dqrdc.o gfortran -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -c dqrdc2.f -o dqrdc2.o gfortran -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -c dqrls.f -o dqrls.o gfortran -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -c dqrsl.f -o dqrsl.o gfortran -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -c dqrutl.f -o dqrutl.o gfortran -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -c dsvdc.f -o dsvdc.o gfortran -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -c dtrco.f -o dtrco.o gfortran -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -c dtrsl.f -o dtrsl.o ar -cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o ranlib libappl.a make[4]: Leaving directory '/<>/src/appl' #@/usr/bin/make install-Linpack make[3]: Leaving directory '/<>/src/appl' make[3]: Entering directory '/<>/src/nmath' making mlutils.d from mlutils.c making d1mach.d from d1mach.c making i1mach.d from i1mach.c making fmax2.d from fmax2.c making fmin2.d from fmin2.c making fprec.d from fprec.c making fround.d from fround.c making ftrunc.d from ftrunc.c making sign.d from sign.c making fsign.d from fsign.c making imax2.d from imax2.c making imin2.d from imin2.c making chebyshev.d from chebyshev.c making log1p.d from log1p.c making lgammacor.d from lgammacor.c making gammalims.d from gammalims.c making stirlerr.d from stirlerr.c making bd0.d from bd0.c making gamma.d from gamma.c making lgamma.d from lgamma.c making gamma_cody.d from gamma_cody.c making beta.d from beta.c making lbeta.d from lbeta.c making polygamma.d from polygamma.c making cospi.d from cospi.c making bessel_i.d from bessel_i.c making bessel_j.d from bessel_j.c making bessel_k.d from bessel_k.c making bessel_y.d from bessel_y.c making choose.d from choose.c making snorm.d from snorm.c making sexp.d from sexp.c making dgamma.d from dgamma.c making pgamma.d from pgamma.c making qgamma.d from qgamma.c making rgamma.d from rgamma.c making dbeta.d from dbeta.c making pbeta.d from pbeta.c making qbeta.d from qbeta.c making rbeta.d from rbeta.c making dunif.d from dunif.c making punif.d from punif.c making qunif.d from qunif.c making runif.d from runif.c making dnorm.d from dnorm.c making pnorm.d from pnorm.c making qnorm.d from qnorm.c making rnorm.d from rnorm.c making dlnorm.d from dlnorm.c making plnorm.d from plnorm.c making qlnorm.d from qlnorm.c making rlnorm.d from rlnorm.c making df.d from df.c making pf.d from pf.c making qf.d from qf.c making rf.d from rf.c making dnf.d from dnf.c making dt.d from dt.c making pt.d from pt.c making qt.d from qt.c making rt.d from rt.c making dnt.d from dnt.c making dchisq.d from dchisq.c making pchisq.d from pchisq.c making qchisq.d from qchisq.c making rchisq.d from rchisq.c making rnchisq.d from rnchisq.c making dbinom.d from dbinom.c making pbinom.d from pbinom.c making qbinom.d from qbinom.c making rbinom.d from rbinom.c making rmultinom.d from rmultinom.c making dcauchy.d from dcauchy.c making pcauchy.d from pcauchy.c making qcauchy.d from qcauchy.c making rcauchy.d from rcauchy.c making dexp.d from dexp.c making pexp.d from pexp.c making qexp.d from qexp.c making rexp.d from rexp.c making dgeom.d from dgeom.c making pgeom.d from pgeom.c making qgeom.d from qgeom.c making rgeom.d from rgeom.c making dhyper.d from dhyper.c making phyper.d from phyper.c making qhyper.d from qhyper.c making rhyper.d from rhyper.c making dnbinom.d from dnbinom.c making pnbinom.d from pnbinom.c making qnbinom.d from qnbinom.c making qnbinom_mu.d from qnbinom_mu.c making rnbinom.d from rnbinom.c making dpois.d from dpois.c making ppois.d from ppois.c making qpois.d from qpois.c making rpois.d from rpois.c making dweibull.d from dweibull.c making pweibull.d from pweibull.c making qweibull.d from qweibull.c making rweibull.d from rweibull.c making dlogis.d from dlogis.c making plogis.d from plogis.c making qlogis.d from qlogis.c making rlogis.d from rlogis.c making dnchisq.d from dnchisq.c making pnchisq.d from pnchisq.c making qnchisq.d from qnchisq.c making dnbeta.d from dnbeta.c making pnbeta.d from pnbeta.c making qnbeta.d from qnbeta.c making pnf.d from pnf.c making pnt.d from pnt.c making qnf.d from qnf.c making qnt.d from qnt.c making ptukey.d from ptukey.c making qtukey.d from qtukey.c making toms708.d from toms708.c making wilcox.d from wilcox.c making signrank.d from signrank.c make[4]: Entering directory '/<>/src/nmath' gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c mlutils.c -o mlutils.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c d1mach.c -o d1mach.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c i1mach.c -o i1mach.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c fmax2.c -o fmax2.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c fmin2.c -o fmin2.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c fprec.c -o fprec.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c fround.c -o fround.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c ftrunc.c -o ftrunc.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c sign.c -o sign.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c fsign.c -o fsign.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c imax2.c -o imax2.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c imin2.c -o imin2.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c chebyshev.c -o chebyshev.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c log1p.c -o log1p.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c lgammacor.c -o lgammacor.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c gammalims.c -o gammalims.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c stirlerr.c -o stirlerr.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c bd0.c -o bd0.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c gamma.c -o gamma.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c lgamma.c -o lgamma.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c gamma_cody.c -o gamma_cody.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c beta.c -o beta.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c lbeta.c -o lbeta.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c polygamma.c -o polygamma.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c cospi.c -o cospi.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c bessel_i.c -o bessel_i.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c bessel_j.c -o bessel_j.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c bessel_k.c -o bessel_k.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c bessel_y.c -o bessel_y.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c choose.c -o choose.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c snorm.c -o snorm.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c sexp.c -o sexp.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c dgamma.c -o dgamma.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c pgamma.c -o pgamma.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c qgamma.c -o qgamma.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c rgamma.c -o rgamma.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c dbeta.c -o dbeta.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c pbeta.c -o pbeta.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c qbeta.c -o qbeta.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c rbeta.c -o rbeta.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c dunif.c -o dunif.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c punif.c -o punif.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c qunif.c -o qunif.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c runif.c -o runif.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c dnorm.c -o dnorm.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c pnorm.c -o pnorm.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c qnorm.c -o qnorm.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c rnorm.c -o rnorm.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c dlnorm.c -o dlnorm.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c plnorm.c -o plnorm.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c qlnorm.c -o qlnorm.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c rlnorm.c -o rlnorm.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c df.c -o df.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c pf.c -o pf.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c qf.c -o qf.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c rf.c -o rf.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c dnf.c -o dnf.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c dt.c -o dt.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c pt.c -o pt.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c qt.c -o qt.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c rt.c -o rt.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c dnt.c -o dnt.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c dchisq.c -o dchisq.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c pchisq.c -o pchisq.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c qchisq.c -o qchisq.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c rchisq.c -o rchisq.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c rnchisq.c -o rnchisq.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c dbinom.c -o dbinom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c pbinom.c -o pbinom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c qbinom.c -o qbinom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c rbinom.c -o rbinom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c rmultinom.c -o rmultinom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c dcauchy.c -o dcauchy.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c pcauchy.c -o pcauchy.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c qcauchy.c -o qcauchy.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c rcauchy.c -o rcauchy.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c dexp.c -o dexp.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c pexp.c -o pexp.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c qexp.c -o qexp.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c rexp.c -o rexp.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c dgeom.c -o dgeom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c pgeom.c -o pgeom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c qgeom.c -o qgeom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c rgeom.c -o rgeom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c dhyper.c -o dhyper.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c phyper.c -o phyper.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c qhyper.c -o qhyper.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c rhyper.c -o rhyper.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c dnbinom.c -o dnbinom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c pnbinom.c -o pnbinom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c qnbinom.c -o qnbinom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c qnbinom_mu.c -o qnbinom_mu.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c rnbinom.c -o rnbinom.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c dpois.c -o dpois.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c ppois.c -o ppois.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c qpois.c -o qpois.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c rpois.c -o rpois.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c dweibull.c -o dweibull.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c pweibull.c -o pweibull.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c qweibull.c -o qweibull.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c rweibull.c -o rweibull.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c dlogis.c -o dlogis.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c plogis.c -o plogis.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c qlogis.c -o qlogis.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c rlogis.c -o rlogis.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c dnchisq.c -o dnchisq.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c pnchisq.c -o pnchisq.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c qnchisq.c -o qnchisq.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c dnbeta.c -o dnbeta.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c pnbeta.c -o pnbeta.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c qnbeta.c -o qnbeta.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c pnf.c -o pnf.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c pnt.c -o pnt.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c qnf.c -o qnf.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c qnt.c -o qnt.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c ptukey.c -o ptukey.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c qtukey.c -o qtukey.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c toms708.c -o toms708.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c wilcox.c -o wilcox.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c signrank.c -o signrank.o ar -cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o qnbinom_mu.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o ranlib libnmath.a make[4]: Leaving directory '/<>/src/nmath' make[3]: Leaving directory '/<>/src/nmath' make[3]: Entering directory '/<>/src/unix' config.status: creating src/unix/Makefile making Rembedded.d from Rembedded.c making dynload.d from dynload.c making system.d from system.c making sys-unix.d from sys-unix.c making sys-std.d from sys-std.c making X11.d from X11.c make[4]: Entering directory '/<>/src/unix' gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c Rembedded.c -o Rembedded.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c dynload.c -o dynload.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c system.c -o system.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c sys-unix.c -o sys-unix.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c sys-std.c -o sys-std.o gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c X11.c -o X11.o ar -cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o ranlib libunix.a make[4]: Leaving directory '/<>/src/unix' make[4]: Entering directory '/<>/src/unix' gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -DR_HOME='"/<>"' \ -o Rscript ./Rscript.c make[4]: Leaving directory '/<>/src/unix' make[3]: Leaving directory '/<>/src/unix' make[3]: Entering directory '/<>/src/main' config.status: creating src/main/Makefile making CommandLineArgs.d from CommandLineArgs.c making Rdynload.d from Rdynload.c making Renviron.d from Renviron.c making RNG.d from RNG.c making agrep.d from agrep.c making altclasses.d from altclasses.c making altrep.d from altrep.c making apply.d from apply.c making arithmetic.d from arithmetic.c making array.d from array.c making attrib.d from attrib.c making bind.d from bind.c making builtin.d from builtin.c making character.d from character.c making clippath.d from clippath.c making coerce.d from coerce.c making colors.d from colors.c making complex.d from complex.c making connections.d from connections.c making context.d from context.c making cum.d from cum.c making dcf.d from dcf.c making datetime.d from datetime.c making debug.d from debug.c making deparse.d from deparse.c making devices.d from devices.c making dotcode.d from dotcode.c making dounzip.d from dounzip.c making dstruct.d from dstruct.c making duplicate.d from duplicate.c making edit.d from edit.c making engine.d from engine.c making envir.d from envir.c making errors.d from errors.c making eval.d from eval.c making flexiblas.d from flexiblas.c making format.d from format.c making gevents.d from gevents.c making gram.d from gram.c making gram-ex.d from gram-ex.c making graphics.d from graphics.c making grep.d from grep.c making identical.d from identical.c making inlined.d from inlined.c making inspect.d from inspect.c making internet.d from internet.c making iosupport.d from iosupport.c making lapack.d from lapack.c making list.d from list.c making localecharset.d from localecharset.c making logic.d from logic.c making machine.d from machine.c making main.d from main.c making mapply.d from mapply.c making mask.d from mask.c making match.d from match.c making memory.d from memory.c making names.d from names.c making objects.d from objects.c making options.d from options.c making paste.d from paste.c making patterns.d from patterns.c making platform.d from platform.c making plot.d from plot.c making plot3d.d from plot3d.c making plotmath.d from plotmath.c making print.d from print.c making printarray.d from printarray.c making printvector.d from printvector.c making printutils.d from printutils.c making qsort.d from qsort.c making radixsort.d from radixsort.c making random.d from random.c making raw.d from raw.c making registration.d from registration.c making relop.d from relop.c making rlocale.d from rlocale.c making saveload.d from saveload.c making scan.d from scan.c making seq.d from seq.c making serialize.d from serialize.c making sort.d from sort.c making source.d from source.c making split.d from split.c making sprintf.d from sprintf.c making startup.d from startup.c making subassign.d from subassign.c making subscript.d from subscript.c making subset.d from subset.c making summary.d from summary.c making sysutils.d from sysutils.c making times.d from times.c making unique.d from unique.c making util.d from util.c making version.d from version.c making g_alab_her.d from g_alab_her.c making g_cntrlify.d from g_cntrlify.c making g_fontdb.d from g_fontdb.c making g_her_glyph.d from g_her_glyph.c making Rmain.d from Rmain.c making alloca.d from alloca.c making mkdtemp.d from mkdtemp.c making strdup.d from strdup.c making strncasecmp.d from strncasecmp.c make[4]: Entering directory '/<>/src/main' gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c CommandLineArgs.c -o CommandLineArgs.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c Rdynload.c -o Rdynload.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c Renviron.c -o Renviron.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c RNG.c -o RNG.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c agrep.c -o agrep.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c altclasses.c -o altclasses.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c altrep.c -o altrep.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c apply.c -o apply.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c arithmetic.c -o arithmetic.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c array.c -o array.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c attrib.c -o attrib.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c bind.c -o bind.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c builtin.c -o builtin.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c character.c -o character.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c clippath.c -o clippath.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c coerce.c -o coerce.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c colors.c -o colors.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c complex.c -o complex.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c connections.c -o connections.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c context.c -o context.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c cum.c -o cum.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c dcf.c -o dcf.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c datetime.c -o datetime.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c debug.c -o debug.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c deparse.c -o deparse.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c devices.c -o devices.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c dotcode.c -o dotcode.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c dounzip.c -o dounzip.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c dstruct.c -o dstruct.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c duplicate.c -o duplicate.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c edit.c -o edit.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c engine.c -o engine.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c envir.c -o envir.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c errors.c -o errors.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c eval.c -o eval.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c flexiblas.c -o flexiblas.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c format.c -o format.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c gevents.c -o gevents.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c gram.c -o gram.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c gram-ex.c -o gram-ex.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c graphics.c -o graphics.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c grep.c -o grep.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c identical.c -o identical.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c inlined.c -o inlined.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c inspect.c -o inspect.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c internet.c -o internet.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c iosupport.c -o iosupport.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c lapack.c -o lapack.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c list.c -o list.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c localecharset.c -o localecharset.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c logic.c -o logic.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c machine.c -o machine.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c main.c -o main.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c mapply.c -o mapply.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c mask.c -o mask.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c match.c -o match.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c memory.c -o memory.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c names.c -o names.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c objects.c -o objects.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c options.c -o options.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c paste.c -o paste.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c patterns.c -o patterns.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c platform.c -o platform.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c plot.c -o plot.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c plot3d.c -o plot3d.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c plotmath.c -o plotmath.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c print.c -o print.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c printarray.c -o printarray.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c printvector.c -o printvector.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c printutils.c -o printutils.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c qsort.c -o qsort.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c radixsort.c -o radixsort.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c random.c -o random.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c raw.c -o raw.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c registration.c -o registration.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c relop.c -o relop.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c rlocale.c -o rlocale.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c saveload.c -o saveload.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c scan.c -o scan.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c seq.c -o seq.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c serialize.c -o serialize.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c sort.c -o sort.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c source.c -o source.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c split.c -o split.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c sprintf.c -o sprintf.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c startup.c -o startup.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c subassign.c -o subassign.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c subscript.c -o subscript.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c subset.c -o subset.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c summary.c -o summary.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c sysutils.c -o sysutils.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c times.c -o times.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c unique.c -o unique.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c util.c -o util.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c version.c -o version.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c g_alab_her.c -o g_alab_her.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c g_cntrlify.c -o g_cntrlify.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c g_fontdb.c -o g_fontdb.o gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c g_her_glyph.c -o g_her_glyph.o gfortran -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -c xxxpr.f -o xxxpr.o gcc -shared -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o altclasses.o altrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o clippath.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o flexiblas.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o machine.o main.o mapply.o mask.o match.o memory.o names.o objects.o options.o paste.o patterns.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o radixsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/tre/libtre.a -lblas -lgfortran -lm -lquadmath -lreadline -lpcre2-8 -llzma -lbz2 -lz -ltirpc -lrt -ldl -lm -licuuc -licui18n make[5]: Entering directory '/<>/src/main' mkdir -p -- /<>/bin/exec mkdir -p -- /<>/lib make[5]: Leaving directory '/<>/src/main' make[4]: Leaving directory '/<>/src/main' make[4]: Entering directory '/<>/src/main' gcc -I../../src/extra -I/usr/include/tirpc -I. -I../../src/include -I../../src/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c Rmain.c -o Rmain.o gcc -Wl,--export-dynamic -fopenmp -L"../../lib" -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -o R.bin Rmain.o -lR make[5]: Entering directory '/<>/src/main' make[5]: Leaving directory '/<>/src/main' make[4]: Leaving directory '/<>/src/main' make[3]: Leaving directory '/<>/src/main' make[3]: Entering directory '/<>/src/modules' make[4]: Entering directory '/<>/src/modules/internet' making Rhttpd.d from Rhttpd.c making Rsock.d from Rsock.c making internet.d from internet.c making libcurl.d from libcurl.c making sock.d from sock.c making sockconn.d from sockconn.c make[5]: Entering directory '/<>/src/modules/internet' gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fvisibility=hidden -c Rhttpd.c -o Rhttpd.o gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fvisibility=hidden -c Rsock.c -o Rsock.o gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fvisibility=hidden -c internet.c -o internet.o gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fvisibility=hidden -c libcurl.c -o libcurl.o gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fvisibility=hidden -c sock.c -o sock.o gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -fvisibility=hidden -c sockconn.c -o sockconn.o gcc -shared -L"../../../lib" -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -o internet.so Rhttpd.o Rsock.o internet.o libcurl.o sock.o sockconn.o -lcurl -lR make[6]: Entering directory '/<>/src/modules/internet' mkdir -p -- /<>/modules make[6]: Leaving directory '/<>/src/modules/internet' make[5]: Leaving directory '/<>/src/modules/internet' make[4]: Leaving directory '/<>/src/modules/internet' make[4]: Entering directory '/<>/src/modules/lapack' making Lapack.d from Lapack.c make[5]: Entering directory '/<>/src/modules/lapack' gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c Lapack.c -o Lapack.o gcc -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c ../../main/flexiblas.c -o flexiblas.o gcc -shared -L"../../../lib" -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -o lapack.so Lapack.o flexiblas.o -lR -llapack -lblas -lgfortran -lm -lquadmath make[6]: Entering directory '/<>/src/modules/lapack' make[6]: Leaving directory '/<>/src/modules/lapack' make[5]: Leaving directory '/<>/src/modules/lapack' make[4]: Leaving directory '/<>/src/modules/lapack' make[4]: Entering directory '/<>/src/modules/X11' making devX11.d from devX11.c making rotated.d from rotated.c making rbitmap.d from rbitmap.c make[5]: Entering directory '/<>/src/modules/X11' gcc -I/usr/include/libpng16 -I/usr/include/powerpc64le-linux-gnu -I/usr/include/webp -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/powerpc64le-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c devX11.c -o devX11.o gcc -I/usr/include/libpng16 -I/usr/include/powerpc64le-linux-gnu -I/usr/include/webp -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/powerpc64le-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c rotated.c -o rotated.o gcc -I/usr/include/libpng16 -I/usr/include/powerpc64le-linux-gnu -I/usr/include/webp -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/powerpc64le-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c rbitmap.c -o rbitmap.o gcc -shared -L"../../../lib" -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -o R_X11.so devX11.o rotated.o rbitmap.o -ltiff -ljpeg -lpng16 -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lz -lpng16 -lcairo -lX11 -lXext -lX11 -lXt -lR -lm gcc -I/usr/include/libpng16 -I/usr/include/powerpc64le-linux-gnu -I/usr/include/webp -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/powerpc64le-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c dataentry.c -o dataentry.o gcc -shared -L"../../../lib" -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -o R_de.so dataentry.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lz -lpng16 -lcairo -lX11 -lXext -lX11 -lXt -lR -lm make[5]: Leaving directory '/<>/src/modules/X11' make[5]: Entering directory '/<>/src/modules/X11' make[5]: Leaving directory '/<>/src/modules/X11' make[4]: Leaving directory '/<>/src/modules/X11' make[3]: Leaving directory '/<>/src/modules' make[3]: Entering directory '/<>/src/library' mkdir -p -- ../../library make[4]: Entering directory '/<>/src/library/profile' building system startup profile mkdir -p -- ../../../library/base/R make[4]: Leaving directory '/<>/src/library/profile' make[4]: Entering directory '/<>/src/library/translations' building package 'translations' mkdir -p -- ../../../library/translations make[5]: Entering directory '/<>/src/library/translations' make[5]: Leaving directory '/<>/src/library/translations' make[4]: Leaving directory '/<>/src/library/translations' make[4]: Entering directory '/<>/src/library/base' building package 'base' make[5]: Entering directory '/<>/src/library/base' mkdir -p -- ../../../library/base/demo make[5]: Leaving directory '/<>/src/library/base' make[4]: Leaving directory '/<>/src/library/base' make[4]: Entering directory '/<>/src/library/tools' building package 'tools' mkdir -p -- ../../../library/tools make[5]: Entering directory '/<>/src/library/tools' mkdir -p -- ../../../library/tools/R make[5]: Leaving directory '/<>/src/library/tools' make[5]: Entering directory '/<>/src/library/tools' make[6]: Entering directory '/<>/src/library/tools/src' making text.d from text.c making init.d from init.c making Rmd5.d from Rmd5.c making md5.d from md5.c making signals.d from signals.c making install.d from install.c making getfmts.d from getfmts.c making http.d from http.c making gramLatex.d from gramLatex.c making gramRd.d from gramRd.c making pdscan.d from pdscan.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c text.c -o text.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c Rmd5.c -o Rmd5.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c md5.c -o md5.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c signals.c -o signals.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c install.c -o install.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c getfmts.c -o getfmts.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c http.c -o http.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c gramLatex.c -o gramLatex.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c gramRd.c -o gramRd.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c pdscan.c -o pdscan.o gcc -shared -L../../../../lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o pdscan.o -L../../../../lib -lR make[7]: Entering directory '/<>/src/library/tools/src' mkdir -p -- ../../../../library/tools/libs make[7]: Leaving directory '/<>/src/library/tools/src' make[6]: Leaving directory '/<>/src/library/tools/src' make[5]: Leaving directory '/<>/src/library/tools' make[5]: Entering directory '/<>/src/library/tools' installing 'sysdata.rda' make[5]: Leaving directory '/<>/src/library/tools' make[4]: Leaving directory '/<>/src/library/tools' make[4]: Entering directory '/<>/src/library/compiler' building package 'compiler' mkdir -p -- ../../../library/compiler make[5]: Entering directory '/<>/src/library/compiler' mkdir -p -- ../../../library/compiler/R make[5]: Leaving directory '/<>/src/library/compiler' make[5]: Entering directory '/<>/src/library/compiler' byte-compiling package 'compiler' make[5]: Leaving directory '/<>/src/library/compiler' make[4]: Leaving directory '/<>/src/library/compiler' make[4]: Entering directory '/<>/src/library/base' byte-compiling package 'base' make[4]: Leaving directory '/<>/src/library/base' make[4]: Entering directory '/<>/src/library/tools' byte-compiling package 'tools' make[4]: Leaving directory '/<>/src/library/tools' make[4]: Entering directory '/<>/src/library/utils' building package 'utils' mkdir -p -- ../../../library/utils mkdir -p -- ../../../library/utils/doc make[5]: Entering directory '/<>/src/library/utils' mkdir -p -- ../../../library/utils/R mkdir -p -- ../../../library/utils/Sweave mkdir -p -- ../../../library/utils/misc make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' make[6]: Entering directory '/<>/src/library/utils/src' making init.d from init.c making io.d from io.c making size.d from size.c making sock.d from sock.c making stubs.d from stubs.c making utils.d from utils.c making hashtab.d from hashtab.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c io.c -o io.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c size.c -o size.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c sock.c -o sock.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c stubs.c -o stubs.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c utils.c -o utils.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c hashtab.c -o hashtab.o gcc -shared -L../../../../lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -o utils.so init.o io.o size.o sock.o stubs.o utils.o hashtab.o -L../../../../lib -lR make[7]: Entering directory '/<>/src/library/utils/src' mkdir -p -- ../../../../library/utils/libs make[7]: Leaving directory '/<>/src/library/utils/src' make[6]: Leaving directory '/<>/src/library/utils/src' make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' installing 'sysdata.rda' make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' byte-compiling package 'utils' make[5]: Leaving directory '/<>/src/library/utils' make[4]: Leaving directory '/<>/src/library/utils' make[4]: Entering directory '/<>/src/library/grDevices' building package 'grDevices' mkdir -p -- ../../../library/grDevices make[5]: Entering directory '/<>/src/library/grDevices' mkdir -p -- ../../../library/grDevices/R mkdir -p -- ../../../library/grDevices/afm mkdir -p -- ../../../library/grDevices/enc mkdir -p -- ../../../library/grDevices/fonts/Roboto mkdir -p -- ../../../library/grDevices/fonts/Montserrat/static mkdir -p -- ../../../library/grDevices/icc make[5]: Leaving directory '/<>/src/library/grDevices' make[5]: Entering directory '/<>/src/library/grDevices' make[6]: Entering directory '/<>/src/library/grDevices/src' making axis_scales.d from axis_scales.c making chull.d from chull.c making devices.d from devices.c making init.d from init.c making stubs.d from stubs.c making colors.d from colors.c making clippath.d from clippath.c making patterns.d from patterns.c making mask.d from mask.c making group.d from group.c making devCairo.d from devCairo.c making devPicTeX.d from devPicTeX.c making devPS.d from devPS.c making devQuartz.d from devQuartz.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c axis_scales.c -o axis_scales.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c chull.c -o chull.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c devices.c -o devices.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c stubs.c -o stubs.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c colors.c -o colors.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c clippath.c -o clippath.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c patterns.c -o patterns.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c mask.c -o mask.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c group.c -o group.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c devCairo.c -o devCairo.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c devPicTeX.c -o devPicTeX.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c devPS.c -o devPS.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c devQuartz.c -o devQuartz.o gcc -shared -L../../../../lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o clippath.o patterns.o mask.o group.o devCairo.o devPicTeX.o devPS.o devQuartz.o -lz -L../../../../lib -lR make[7]: Entering directory '/<>/src/library/grDevices/src' mkdir -p -- ../../../../library/grDevices/libs make[8]: Entering directory '/<>/src/library/grDevices/src/cairo' making cairoBM.d from cairoBM.c make[9]: Entering directory '/<>/src/library/grDevices/src/cairo' make[10]: Entering directory '/<>/src/library/grDevices/src/cairo' gcc -I. -I../../../../../src/include -I../../../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/powerpc64le-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../../../src/modules/X11 -DHAVE_CONFIG_H -fopenmp -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c cairoBM.c -o cairoBM.o gcc -shared -L"../../../../../lib" -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -ltiff -ljpeg -lpng16 -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lz -lcairo -lpng16 -L"../../../../../lib" -lR -lm make[10]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[9]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[8]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[7]: Leaving directory '/<>/src/library/grDevices/src' make[6]: Leaving directory '/<>/src/library/grDevices/src' make[5]: Leaving directory '/<>/src/library/grDevices' make[5]: Entering directory '/<>/src/library/grDevices' byte-compiling package 'grDevices' make[5]: Leaving directory '/<>/src/library/grDevices' make[4]: Leaving directory '/<>/src/library/grDevices' make[4]: Entering directory '/<>/src/library/graphics' building package 'graphics' mkdir -p -- ../../../library/graphics make[5]: Entering directory '/<>/src/library/graphics' mkdir -p -- ../../../library/graphics/R make[5]: Leaving directory '/<>/src/library/graphics' make[5]: Entering directory '/<>/src/library/graphics' make[6]: Entering directory '/<>/src/library/graphics/src' making init.d from init.c making base.d from base.c making graphics.d from graphics.c making par.d from par.c making plot.d from plot.c making plot3d.d from plot3d.c making stem.d from stem.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c base.c -o base.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c graphics.c -o graphics.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c par.c -o par.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c plot.c -o plot.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c plot3d.c -o plot3d.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c stem.c -o stem.o gcc -shared -L../../../../lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR make[7]: Entering directory '/<>/src/library/graphics/src' mkdir -p -- ../../../../library/graphics/libs make[7]: Leaving directory '/<>/src/library/graphics/src' make[6]: Leaving directory '/<>/src/library/graphics/src' make[5]: Leaving directory '/<>/src/library/graphics' make[5]: Entering directory '/<>/src/library/graphics' byte-compiling package 'graphics' make[5]: Leaving directory '/<>/src/library/graphics' make[4]: Leaving directory '/<>/src/library/graphics' make[4]: Entering directory '/<>/src/library/stats' building package 'stats' mkdir -p -- ../../../library/stats make[5]: Entering directory '/<>/src/library/stats' mkdir -p -- ../../../library/stats/R make[5]: Leaving directory '/<>/src/library/stats' make[5]: Entering directory '/<>/src/library/stats' make[6]: Entering directory '/<>/src/library/stats/src' making init.d from init.c making kmeans.d from kmeans.c making ansari.d from ansari.c making bandwidths.d from bandwidths.c making chisqsim.d from chisqsim.c making d2x2xk.d from d2x2xk.c making fexact.d from fexact.c making kendall.d from kendall.c making ks.d from ks.c making line.d from line.c making smooth.d from smooth.c making prho.d from prho.c making swilk.d from swilk.c making ksmooth.d from ksmooth.c making loessc.d from loessc.c making monoSpl.d from monoSpl.c making isoreg.d from isoreg.c making Srunmed.d from Srunmed.c making dblcen.d from dblcen.c making distance.d from distance.c making hclust-utils.d from hclust-utils.c making nls.d from nls.c making rWishart.d from rWishart.c making HoltWinters.d from HoltWinters.c making PPsum.d from PPsum.c making arima.d from arima.c making burg.d from burg.c making filter.d from filter.c making mAR.d from mAR.c making pacf.d from pacf.c making starma.d from starma.c making port.d from port.c making family.d from family.c making sbart.d from sbart.c making approx.d from approx.c making loglin.d from loglin.c making lowess.d from lowess.c making massdist.d from massdist.c making splines.d from splines.c making lm.d from lm.c making complete_cases.d from complete_cases.c making cov.d from cov.c making deriv.d from deriv.c making fft.d from fft.c making fourier.d from fourier.c making model.d from model.c making optim.d from optim.c making optimize.d from optimize.c making integrate.d from integrate.c making random.d from random.c making distn.d from distn.c making zeroin.d from zeroin.c making rcont.d from rcont.c making influence.d from influence.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c kmeans.c -o kmeans.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c ansari.c -o ansari.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c bandwidths.c -o bandwidths.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c chisqsim.c -o chisqsim.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c d2x2xk.c -o d2x2xk.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c fexact.c -o fexact.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c kendall.c -o kendall.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c ks.c -o ks.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c line.c -o line.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c smooth.c -o smooth.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c prho.c -o prho.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c swilk.c -o swilk.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c ksmooth.c -o ksmooth.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c loessc.c -o loessc.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c monoSpl.c -o monoSpl.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c isoreg.c -o isoreg.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c Srunmed.c -o Srunmed.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c dblcen.c -o dblcen.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c distance.c -o distance.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c hclust-utils.c -o hclust-utils.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c nls.c -o nls.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c rWishart.c -o rWishart.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c HoltWinters.c -o HoltWinters.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c PPsum.c -o PPsum.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c arima.c -o arima.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c burg.c -o burg.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c filter.c -o filter.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c mAR.c -o mAR.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c pacf.c -o pacf.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c starma.c -o starma.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c port.c -o port.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c family.c -o family.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c sbart.c -o sbart.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c approx.c -o approx.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c loglin.c -o loglin.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c lowess.c -o lowess.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c massdist.c -o massdist.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c splines.c -o splines.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c lm.c -o lm.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c complete_cases.c -o complete_cases.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c cov.c -o cov.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c deriv.c -o deriv.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c fft.c -o fft.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c fourier.c -o fourier.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c model.c -o model.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c optim.c -o optim.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c optimize.c -o optimize.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c integrate.c -o integrate.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c random.c -o random.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c distn.c -o distn.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c zeroin.c -o zeroin.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c rcont.c -o rcont.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c influence.c -o influence.o gfortran -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -c bsplvd.f -o bsplvd.o gfortran -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -c bvalue.f -o bvalue.o gfortran -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -c bvalus.f -o bvalus.o gfortran -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -c loessf.f -o loessf.o gfortran -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -c ppr.f -o ppr.o gfortran -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -c qsbart.f -o qsbart.o gfortran -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -c sgram.f -o sgram.o gfortran -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -c sinerp.f -o sinerp.o gfortran -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -c sslvrg.f -o sslvrg.o gfortran -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -c stxwx.f -o stxwx.o gfortran -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -c hclust.f -o hclust.o gfortran -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -c kmns.f -o kmns.o gfortran -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -c eureka.f -o eureka.o gfortran -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -c stl.f -o stl.o gfortran -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -c portsrc.f -o portsrc.o gfortran -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -c lminfl.f -o lminfl.o gcc -shared -L../../../../lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L../../../../lib -lR make[7]: Entering directory '/<>/src/library/stats/src' mkdir -p -- ../../../../library/stats/libs make[7]: Leaving directory '/<>/src/library/stats/src' make[6]: Leaving directory '/<>/src/library/stats/src' make[5]: Leaving directory '/<>/src/library/stats' make[5]: Entering directory '/<>/src/library/stats' byte-compiling package 'stats' make[5]: Leaving directory '/<>/src/library/stats' make[4]: Leaving directory '/<>/src/library/stats' make[4]: Entering directory '/<>/src/library/datasets' building package 'datasets' mkdir -p -- ../../../library/datasets make[5]: Entering directory '/<>/src/library/datasets' make[5]: Leaving directory '/<>/src/library/datasets' mkdir -p -- ../../../library/datasets/data make[4]: Leaving directory '/<>/src/library/datasets' make[4]: Entering directory '/<>/src/library/methods' building package 'methods' mkdir -p -- ../../../library/methods make[5]: Entering directory '/<>/src/library/methods' mkdir -p -- ../../../library/methods/R make[5]: Leaving directory '/<>/src/library/methods' make[5]: Entering directory '/<>/src/library/methods' make[6]: Entering directory '/<>/src/library/methods/src' making do_substitute_direct.d from do_substitute_direct.c making init.d from init.c making methods_list_dispatch.d from methods_list_dispatch.c making slot.d from slot.c making class_support.d from class_support.c making tests.d from tests.c making utils.d from utils.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c do_substitute_direct.c -o do_substitute_direct.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c methods_list_dispatch.c -o methods_list_dispatch.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c slot.c -o slot.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c class_support.c -o class_support.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c tests.c -o tests.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c utils.c -o utils.o gcc -shared -L../../../../lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR make[7]: Entering directory '/<>/src/library/methods/src' mkdir -p -- ../../../../library/methods/libs make[7]: Leaving directory '/<>/src/library/methods/src' make[6]: Leaving directory '/<>/src/library/methods/src' make[5]: Leaving directory '/<>/src/library/methods' make[5]: Entering directory '/<>/src/library/methods' byte-compiling package 'methods' initializing class and method definitions ... done make[5]: Leaving directory '/<>/src/library/methods' make[4]: Leaving directory '/<>/src/library/methods' make[4]: Entering directory '/<>/src/library/grid' building package 'grid' mkdir -p -- ../../../library/grid mkdir -p -- ../../../library/grid/doc make[5]: Entering directory '/<>/src/library/grid' mkdir -p -- ../../../library/grid/R make[5]: Leaving directory '/<>/src/library/grid' make[5]: Entering directory '/<>/src/library/grid' make[6]: Entering directory '/<>/src/library/grid/src' making clippath.d from clippath.c making gpar.d from gpar.c making grid.d from grid.c making just.d from just.c making layout.d from layout.c making mask.d from mask.c making matrix.d from matrix.c making path.d from path.c making register.d from register.c making state.d from state.c making typeset.d from typeset.c making unit.d from unit.c making util.d from util.c making viewport.d from viewport.c gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c clippath.c -o clippath.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c gpar.c -o gpar.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c grid.c -o grid.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c just.c -o just.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c layout.c -o layout.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c mask.c -o mask.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c matrix.c -o matrix.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c path.c -o path.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c register.c -o register.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c state.c -o state.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c typeset.c -o typeset.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c unit.c -o unit.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c util.c -o util.o gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c viewport.c -o viewport.o gcc -shared -L../../../../lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -o grid.so clippath.o gpar.o grid.o just.o layout.o mask.o matrix.o path.o register.o state.o typeset.o unit.o util.o viewport.o -L../../../../lib -lR make[7]: Entering directory '/<>/src/library/grid/src' mkdir -p -- ../../../../library/grid/libs make[7]: Leaving directory '/<>/src/library/grid/src' make[6]: Leaving directory '/<>/src/library/grid/src' make[5]: Leaving directory '/<>/src/library/grid' make[5]: Entering directory '/<>/src/library/grid' byte-compiling package 'grid' make[5]: Leaving directory '/<>/src/library/grid' make[4]: Leaving directory '/<>/src/library/grid' make[4]: Entering directory '/<>/src/library/splines' building package 'splines' mkdir -p -- ../../../library/splines make[5]: Entering directory '/<>/src/library/splines' mkdir -p -- ../../../library/splines/R make[5]: Leaving directory '/<>/src/library/splines' make[5]: Entering directory '/<>/src/library/splines' make[6]: Entering directory '/<>/src/library/splines/src' making splines.d from splines.c gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c splines.c -o splines.o gcc -shared -L../../../../lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -o splines.so splines.o -L../../../../lib -lR make[7]: Entering directory '/<>/src/library/splines/src' mkdir -p -- ../../../../library/splines/libs make[7]: Leaving directory '/<>/src/library/splines/src' make[6]: Leaving directory '/<>/src/library/splines/src' make[5]: Leaving directory '/<>/src/library/splines' make[5]: Entering directory '/<>/src/library/splines' byte-compiling package 'splines' make[5]: Leaving directory '/<>/src/library/splines' make[4]: Leaving directory '/<>/src/library/splines' make[4]: Entering directory '/<>/src/library/stats4' building package 'stats4' mkdir -p -- ../../../library/stats4 make[5]: Entering directory '/<>/src/library/stats4' mkdir -p -- ../../../library/stats4/R make[5]: Leaving directory '/<>/src/library/stats4' make[5]: Entering directory '/<>/src/library/stats4' byte-compiling package 'stats4' make[5]: Leaving directory '/<>/src/library/stats4' make[4]: Leaving directory '/<>/src/library/stats4' make[4]: Entering directory '/<>/src/library/tcltk' building package 'tcltk' mkdir -p -- ../../../library/tcltk/R make[5]: Entering directory '/<>/src/library/tcltk' mkdir -p -- ../../../library/tcltk/exec make[5]: Leaving directory '/<>/src/library/tcltk' make[5]: Entering directory '/<>/src/library/tcltk/src' making init.d from init.c making tcltk.d from tcltk.c making tcltk_unix.d from tcltk_unix.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6 -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6 -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c tcltk.c -o tcltk.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6 -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c tcltk_unix.c -o tcltk_unix.o gcc -shared -L../../../../lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/lib/powerpc64le-linux-gnu -ltcl8.6 -L/usr/lib/powerpc64le-linux-gnu -ltk8.6 -lX11 -lXss -lXext -lm -L../../../../lib -lR make[6]: Entering directory '/<>/src/library/tcltk/src' mkdir -p -- ../../../../library/tcltk/libs make[6]: Leaving directory '/<>/src/library/tcltk/src' make[5]: Leaving directory '/<>/src/library/tcltk/src' make[5]: Entering directory '/<>/src/library/tcltk' byte-compiling package 'tcltk' make[5]: Leaving directory '/<>/src/library/tcltk' make[4]: Leaving directory '/<>/src/library/tcltk' make[4]: Entering directory '/<>/src/library/parallel' building package 'parallel' mkdir -p -- ../../../library/parallel mkdir -p -- ../../../library/parallel/doc make[5]: Entering directory '/<>/src/library/parallel' mkdir -p -- ../../../library/parallel/R make[5]: Leaving directory '/<>/src/library/parallel' make[5]: Entering directory '/<>/src/library/parallel' make[6]: Entering directory '/<>/src/library/parallel/src' making init.d from init.c making rngstream.d from rngstream.c making fork.d from fork.c gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c init.c -o init.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c rngstream.c -o rngstream.o gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -fvisibility=hidden -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c fork.c -o fork.o gcc -shared -L../../../../lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR make[7]: Entering directory '/<>/src/library/parallel/src' mkdir -p -- ../../../../library/parallel/libs make[7]: Leaving directory '/<>/src/library/parallel/src' make[6]: Leaving directory '/<>/src/library/parallel/src' make[5]: Leaving directory '/<>/src/library/parallel' make[5]: Entering directory '/<>/src/library/parallel' byte-compiling package 'parallel' make[5]: Leaving directory '/<>/src/library/parallel' make[4]: Leaving directory '/<>/src/library/parallel' make[4]: Entering directory '/<>/src/library/base' make[4]: Leaving directory '/<>/src/library/base' installing parsed NAMESPACE files make[3]: Leaving directory '/<>/src/library' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>/tests' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/<>/tests' you should 'make docs' now ... make[1]: Leaving directory '/<>' (cd src/nmath/standalone; \ /usr/bin/make CFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CFLAGS` -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT" \ CXXFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CFLAGS` -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT" \ FFLAGS="-g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -D_REENTRANT" \ CC=gcc \ CXX=g++ \ F77=gfortran \ R_GZIPCMD="/bin/gzip -n" \ libRmath_la_LDFLAGS=-Wl,-soname,libRmath.so.1 \ shared static ) make[1]: Entering directory '/<>/src/nmath/standalone' (cd ../../include; /usr/bin/make Rmath.h) make[2]: Entering directory '/<>/src/include' make[2]: 'Rmath.h' is up to date. make[2]: Leaving directory '/<>/src/include' Copying source files make[2]: Entering directory '/<>/src/nmath/standalone' making mlutils.d from mlutils.c making d1mach.d from d1mach.c making i1mach.d from i1mach.c making fmax2.d from fmax2.c making fmin2.d from fmin2.c making fprec.d from fprec.c making fround.d from fround.c making ftrunc.d from ftrunc.c making sign.d from sign.c making fsign.d from fsign.c making imax2.d from imax2.c making imin2.d from imin2.c making chebyshev.d from chebyshev.c making log1p.d from log1p.c making lgammacor.d from lgammacor.c making gammalims.d from gammalims.c making stirlerr.d from stirlerr.c making bd0.d from bd0.c making gamma.d from gamma.c making lgamma.d from lgamma.c making gamma_cody.d from gamma_cody.c making beta.d from beta.c making lbeta.d from lbeta.c making polygamma.d from polygamma.c making cospi.d from cospi.c making bessel_i.d from bessel_i.c making bessel_j.d from bessel_j.c making bessel_k.d from bessel_k.c making bessel_y.d from bessel_y.c making choose.d from choose.c making snorm.d from snorm.c making sexp.d from sexp.c making dgamma.d from dgamma.c making pgamma.d from pgamma.c making qgamma.d from qgamma.c making rgamma.d from rgamma.c making dbeta.d from dbeta.c making pbeta.d from pbeta.c making qbeta.d from qbeta.c making rbeta.d from rbeta.c making dunif.d from dunif.c making punif.d from punif.c making qunif.d from qunif.c making runif.d from runif.c making dnorm.d from dnorm.c making pnorm.d from pnorm.c making qnorm.d from qnorm.c making rnorm.d from rnorm.c making dlnorm.d from dlnorm.c making plnorm.d from plnorm.c making qlnorm.d from qlnorm.c making rlnorm.d from rlnorm.c making df.d from df.c making pf.d from pf.c making qf.d from qf.c making rf.d from rf.c making dnf.d from dnf.c making dt.d from dt.c making pt.d from pt.c making qt.d from qt.c making rt.d from rt.c making dnt.d from dnt.c making dchisq.d from dchisq.c making pchisq.d from pchisq.c making qchisq.d from qchisq.c making rchisq.d from rchisq.c making rnchisq.d from rnchisq.c making dbinom.d from dbinom.c making pbinom.d from pbinom.c making qbinom.d from qbinom.c making rbinom.d from rbinom.c making rmultinom.d from rmultinom.c making dcauchy.d from dcauchy.c making pcauchy.d from pcauchy.c making qcauchy.d from qcauchy.c making rcauchy.d from rcauchy.c making dexp.d from dexp.c making pexp.d from pexp.c making qexp.d from qexp.c making rexp.d from rexp.c making dgeom.d from dgeom.c making pgeom.d from pgeom.c making qgeom.d from qgeom.c making rgeom.d from rgeom.c making dhyper.d from dhyper.c making phyper.d from phyper.c making qhyper.d from qhyper.c making rhyper.d from rhyper.c making dnbinom.d from dnbinom.c making pnbinom.d from pnbinom.c making qnbinom.d from qnbinom.c making qnbinom_mu.d from qnbinom_mu.c making rnbinom.d from rnbinom.c making dpois.d from dpois.c making ppois.d from ppois.c making qpois.d from qpois.c making rpois.d from rpois.c making dweibull.d from dweibull.c making pweibull.d from pweibull.c making qweibull.d from qweibull.c making rweibull.d from rweibull.c making dlogis.d from dlogis.c making plogis.d from plogis.c making qlogis.d from qlogis.c making rlogis.d from rlogis.c making dnchisq.d from dnchisq.c making pnchisq.d from pnchisq.c making qnchisq.d from qnchisq.c making dnbeta.d from dnbeta.c making pnbeta.d from pnbeta.c making qnbeta.d from qnbeta.c making pnf.d from pnf.c making pnt.d from pnt.c making qnf.d from qnf.c making qnt.d from qnt.c making ptukey.d from ptukey.c making qtukey.d from qtukey.c making toms708.d from toms708.c making wilcox.d from wilcox.c making signrank.d from signrank.c making std_unif.d from std_unif.c make[2]: Leaving directory '/<>/src/nmath/standalone' make[2]: Entering directory '/<>/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c mlutils.c -o mlutils.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c d1mach.c -o d1mach.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c i1mach.c -o i1mach.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c fmax2.c -o fmax2.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c fmin2.c -o fmin2.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c fprec.c -o fprec.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c fround.c -o fround.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c ftrunc.c -o ftrunc.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c sign.c -o sign.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c fsign.c -o fsign.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c imax2.c -o imax2.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c imin2.c -o imin2.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c chebyshev.c -o chebyshev.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c log1p.c -o log1p.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c lgammacor.c -o lgammacor.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c gammalims.c -o gammalims.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c stirlerr.c -o stirlerr.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c bd0.c -o bd0.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c gamma.c -o gamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c lgamma.c -o lgamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c gamma_cody.c -o gamma_cody.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c beta.c -o beta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c lbeta.c -o lbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c polygamma.c -o polygamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c cospi.c -o cospi.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c bessel_i.c -o bessel_i.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c bessel_j.c -o bessel_j.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c bessel_k.c -o bessel_k.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c bessel_y.c -o bessel_y.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c choose.c -o choose.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c snorm.c -o snorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c sexp.c -o sexp.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c dgamma.c -o dgamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c pgamma.c -o pgamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qgamma.c -o qgamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c rgamma.c -o rgamma.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c dbeta.c -o dbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c pbeta.c -o pbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qbeta.c -o qbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c rbeta.c -o rbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c dunif.c -o dunif.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c punif.c -o punif.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qunif.c -o qunif.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c runif.c -o runif.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c dnorm.c -o dnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c pnorm.c -o pnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qnorm.c -o qnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c rnorm.c -o rnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c dlnorm.c -o dlnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c plnorm.c -o plnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qlnorm.c -o qlnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c rlnorm.c -o rlnorm.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c df.c -o df.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c pf.c -o pf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qf.c -o qf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c rf.c -o rf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c dnf.c -o dnf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c dt.c -o dt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c pt.c -o pt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qt.c -o qt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c rt.c -o rt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c dnt.c -o dnt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c dchisq.c -o dchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c pchisq.c -o pchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qchisq.c -o qchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c rchisq.c -o rchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c rnchisq.c -o rnchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c dbinom.c -o dbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c pbinom.c -o pbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qbinom.c -o qbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c rbinom.c -o rbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c rmultinom.c -o rmultinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c dcauchy.c -o dcauchy.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c pcauchy.c -o pcauchy.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qcauchy.c -o qcauchy.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c rcauchy.c -o rcauchy.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c dexp.c -o dexp.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c pexp.c -o pexp.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qexp.c -o qexp.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c rexp.c -o rexp.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c dgeom.c -o dgeom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c pgeom.c -o pgeom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qgeom.c -o qgeom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c rgeom.c -o rgeom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c dhyper.c -o dhyper.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c phyper.c -o phyper.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qhyper.c -o qhyper.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c rhyper.c -o rhyper.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c dnbinom.c -o dnbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c pnbinom.c -o pnbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qnbinom.c -o qnbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qnbinom_mu.c -o qnbinom_mu.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c rnbinom.c -o rnbinom.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c dpois.c -o dpois.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c ppois.c -o ppois.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qpois.c -o qpois.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c rpois.c -o rpois.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c dweibull.c -o dweibull.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c pweibull.c -o pweibull.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qweibull.c -o qweibull.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c rweibull.c -o rweibull.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c dlogis.c -o dlogis.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c plogis.c -o plogis.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qlogis.c -o qlogis.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c rlogis.c -o rlogis.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c dnchisq.c -o dnchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c pnchisq.c -o pnchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qnchisq.c -o qnchisq.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c dnbeta.c -o dnbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c pnbeta.c -o pnbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qnbeta.c -o qnbeta.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c pnf.c -o pnf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c pnt.c -o pnt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qnf.c -o qnf.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qnt.c -o qnt.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c ptukey.c -o ptukey.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qtukey.c -o qtukey.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c toms708.c -o toms708.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c wilcox.c -o wilcox.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c signrank.c -o signrank.lo gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c std_unif.c -o std_unif.lo gcc -shared -fopenmp -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -o libRmath.so -Wl,-soname,libRmath.so.1 mlutils.lo d1mach.lo i1mach.lo fmax2.lo fmin2.lo fprec.lo fround.lo ftrunc.lo sign.lo fsign.lo imax2.lo imin2.lo chebyshev.lo log1p.lo lgammacor.lo gammalims.lo stirlerr.lo bd0.lo gamma.lo lgamma.lo gamma_cody.lo beta.lo lbeta.lo polygamma.lo cospi.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_y.lo choose.lo snorm.lo sexp.lo dgamma.lo pgamma.lo qgamma.lo rgamma.lo dbeta.lo pbeta.lo qbeta.lo rbeta.lo dunif.lo punif.lo qunif.lo runif.lo dnorm.lo pnorm.lo qnorm.lo rnorm.lo dlnorm.lo plnorm.lo qlnorm.lo rlnorm.lo df.lo pf.lo qf.lo rf.lo dnf.lo dt.lo pt.lo qt.lo rt.lo dnt.lo dchisq.lo pchisq.lo qchisq.lo rchisq.lo rnchisq.lo dbinom.lo pbinom.lo qbinom.lo rbinom.lo rmultinom.lo dcauchy.lo pcauchy.lo qcauchy.lo rcauchy.lo dexp.lo pexp.lo qexp.lo rexp.lo dgeom.lo pgeom.lo qgeom.lo rgeom.lo dhyper.lo phyper.lo qhyper.lo rhyper.lo dnbinom.lo pnbinom.lo qnbinom.lo qnbinom_mu.lo rnbinom.lo dpois.lo ppois.lo qpois.lo rpois.lo dweibull.lo pweibull.lo qweibull.lo rweibull.lo dlogis.lo plogis.lo qlogis.lo rlogis.lo dnchisq.lo pnchisq.lo qnchisq.lo dnbeta.lo pnbeta.lo qnbeta.lo pnf.lo pnt.lo qnf.lo qnt.lo ptukey.lo qtukey.lo toms708.lo wilcox.lo signrank.lo std_unif.lo -lm make[2]: Leaving directory '/<>/src/nmath/standalone' make[2]: Entering directory '/<>/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c mlutils.c -o mlutils.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c d1mach.c -o d1mach.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c i1mach.c -o i1mach.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c fmax2.c -o fmax2.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c fmin2.c -o fmin2.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c fprec.c -o fprec.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c fround.c -o fround.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c ftrunc.c -o ftrunc.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c sign.c -o sign.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c fsign.c -o fsign.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c imax2.c -o imax2.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c imin2.c -o imin2.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c chebyshev.c -o chebyshev.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c log1p.c -o log1p.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c lgammacor.c -o lgammacor.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c gammalims.c -o gammalims.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c stirlerr.c -o stirlerr.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c bd0.c -o bd0.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c gamma.c -o gamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c lgamma.c -o lgamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c gamma_cody.c -o gamma_cody.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c beta.c -o beta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c lbeta.c -o lbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c polygamma.c -o polygamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c cospi.c -o cospi.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c bessel_i.c -o bessel_i.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c bessel_j.c -o bessel_j.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c bessel_k.c -o bessel_k.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c bessel_y.c -o bessel_y.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c choose.c -o choose.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c snorm.c -o snorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c sexp.c -o sexp.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c dgamma.c -o dgamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c pgamma.c -o pgamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qgamma.c -o qgamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c rgamma.c -o rgamma.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c dbeta.c -o dbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c pbeta.c -o pbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qbeta.c -o qbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c rbeta.c -o rbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c dunif.c -o dunif.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c punif.c -o punif.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qunif.c -o qunif.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c runif.c -o runif.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c dnorm.c -o dnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c pnorm.c -o pnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qnorm.c -o qnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c rnorm.c -o rnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c dlnorm.c -o dlnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c plnorm.c -o plnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qlnorm.c -o qlnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c rlnorm.c -o rlnorm.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c df.c -o df.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c pf.c -o pf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qf.c -o qf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c rf.c -o rf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c dnf.c -o dnf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c dt.c -o dt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c pt.c -o pt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qt.c -o qt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c rt.c -o rt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c dnt.c -o dnt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c dchisq.c -o dchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c pchisq.c -o pchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qchisq.c -o qchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c rchisq.c -o rchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c rnchisq.c -o rnchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c dbinom.c -o dbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c pbinom.c -o pbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qbinom.c -o qbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c rbinom.c -o rbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c rmultinom.c -o rmultinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c dcauchy.c -o dcauchy.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c pcauchy.c -o pcauchy.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qcauchy.c -o qcauchy.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c rcauchy.c -o rcauchy.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c dexp.c -o dexp.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c pexp.c -o pexp.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qexp.c -o qexp.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c rexp.c -o rexp.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c dgeom.c -o dgeom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c pgeom.c -o pgeom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qgeom.c -o qgeom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c rgeom.c -o rgeom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c dhyper.c -o dhyper.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c phyper.c -o phyper.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qhyper.c -o qhyper.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c rhyper.c -o rhyper.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c dnbinom.c -o dnbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c pnbinom.c -o pnbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qnbinom.c -o qnbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qnbinom_mu.c -o qnbinom_mu.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c rnbinom.c -o rnbinom.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c dpois.c -o dpois.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c ppois.c -o ppois.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qpois.c -o qpois.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c rpois.c -o rpois.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c dweibull.c -o dweibull.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c pweibull.c -o pweibull.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qweibull.c -o qweibull.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c rweibull.c -o rweibull.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c dlogis.c -o dlogis.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c plogis.c -o plogis.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qlogis.c -o qlogis.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c rlogis.c -o rlogis.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c dnchisq.c -o dnchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c pnchisq.c -o pnchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qnchisq.c -o qnchisq.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c dnbeta.c -o dnbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c pnbeta.c -o pnbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qnbeta.c -o qnbeta.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c pnf.c -o pnf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c pnt.c -o pnt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qnf.c -o qnf.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qnt.c -o qnt.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c ptukey.c -o ptukey.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c qtukey.c -o qtukey.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c toms708.c -o toms708.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c wilcox.c -o wilcox.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c signrank.c -o signrank.o gcc -I. -I../../../src/include -I../../../src/include -I./.. -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/nmath/standalone=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -c std_unif.c -o std_unif.o ar -cr libRmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o qnbinom_mu.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o std_unif.o ranlib libRmath.a make[2]: Leaving directory '/<>/src/nmath/standalone' make[1]: Leaving directory '/<>/src/nmath/standalone' R_GZIPCMD="/bin/gzip -n" \ /usr/bin/make docs R_CMD_BUILD_HELP_OPTS="--txt --example" make[1]: Entering directory '/<>' make[2]: Entering directory '/<>/m4' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/<>/m4' make[2]: Entering directory '/<>/tools' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/<>/tools' make[2]: Entering directory '/<>/doc' make[3]: Entering directory '/<>/doc/html' make[3]: Leaving directory '/<>/doc/html' make[3]: Entering directory '/<>/doc/manual' make[3]: Nothing to be done for 'R'. make[3]: Leaving directory '/<>/doc/manual' make[2]: Leaving directory '/<>/doc' make[2]: Entering directory '/<>/etc' make[2]: Leaving directory '/<>/etc' make[2]: Entering directory '/<>/share' make[2]: Leaving directory '/<>/share' make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src/scripts' make[4]: Entering directory '/<>/src/scripts' make[4]: Leaving directory '/<>/src/scripts' make[3]: Leaving directory '/<>/src/scripts' make[3]: Entering directory '/<>/src/include' make[4]: Entering directory '/<>/src/include/R_ext' make[4]: Nothing to be done for 'R'. make[4]: Leaving directory '/<>/src/include/R_ext' make[3]: Leaving directory '/<>/src/include' make[3]: Entering directory '/<>/src/extra' make[4]: Entering directory '/<>/src/extra/tre' make[5]: Entering directory '/<>/src/extra/tre' make[5]: 'Makedeps' is up to date. make[5]: Leaving directory '/<>/src/extra/tre' make[5]: Entering directory '/<>/src/extra/tre' make[5]: 'libtre.a' is up to date. make[5]: Leaving directory '/<>/src/extra/tre' make[4]: Leaving directory '/<>/src/extra/tre' make[3]: Leaving directory '/<>/src/extra' make[3]: Entering directory '/<>/src/appl' make[4]: Entering directory '/<>/src/appl' make[4]: 'libappl.a' is up to date. make[4]: Leaving directory '/<>/src/appl' #@/usr/bin/make install-Linpack make[3]: Leaving directory '/<>/src/appl' make[3]: Entering directory '/<>/src/nmath' make[4]: Entering directory '/<>/src/nmath' make[4]: 'libnmath.a' is up to date. make[4]: Leaving directory '/<>/src/nmath' make[3]: Leaving directory '/<>/src/nmath' make[3]: Entering directory '/<>/src/unix' make[4]: Entering directory '/<>/src/unix' make[4]: 'libunix.a' is up to date. make[4]: Leaving directory '/<>/src/unix' make[4]: Entering directory '/<>/src/unix' gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -DR_HOME='"/<>"' \ -o Rscript ./Rscript.c make[4]: Leaving directory '/<>/src/unix' make[3]: Leaving directory '/<>/src/unix' make[3]: Entering directory '/<>/src/main' make[4]: Entering directory '/<>/src/main' make[5]: Entering directory '/<>/src/main' /<>/lib/libR.so is unchanged make[5]: Leaving directory '/<>/src/main' make[4]: Leaving directory '/<>/src/main' make[4]: Entering directory '/<>/src/main' make[5]: Entering directory '/<>/src/main' /<>/bin/exec/R is unchanged make[5]: Leaving directory '/<>/src/main' make[4]: Leaving directory '/<>/src/main' make[3]: Leaving directory '/<>/src/main' make[3]: Entering directory '/<>/src/modules' make[4]: Entering directory '/<>/src/modules/internet' make[5]: Entering directory '/<>/src/modules/internet' make[5]: 'internet.so' is up to date. make[5]: Leaving directory '/<>/src/modules/internet' make[4]: Leaving directory '/<>/src/modules/internet' make[4]: Entering directory '/<>/src/modules/lapack' make[5]: Entering directory '/<>/src/modules/lapack' make[5]: 'lapack.so' is up to date. make[5]: Leaving directory '/<>/src/modules/lapack' make[4]: Leaving directory '/<>/src/modules/lapack' make[4]: Entering directory '/<>/src/modules/X11' make[5]: Entering directory '/<>/src/modules/X11' make[5]: 'R_X11.so' is up to date. make[5]: 'R_de.so' is up to date. make[5]: Leaving directory '/<>/src/modules/X11' make[5]: Entering directory '/<>/src/modules/X11' /<>/modules/R_X11.so is unchanged /<>/modules/R_de.so is unchanged make[5]: Leaving directory '/<>/src/modules/X11' make[4]: Leaving directory '/<>/src/modules/X11' make[3]: Leaving directory '/<>/src/modules' make[3]: Entering directory '/<>/src/library' make[4]: Entering directory '/<>/src/library/profile' building system startup profile make[4]: Leaving directory '/<>/src/library/profile' make[4]: Entering directory '/<>/src/library/translations' building package 'translations' make[5]: Entering directory '/<>/src/library/translations' make[5]: Leaving directory '/<>/src/library/translations' make[4]: Leaving directory '/<>/src/library/translations' make[4]: Entering directory '/<>/src/library/base' building package 'base' make[5]: Entering directory '/<>/src/library/base' all.R is unchanged make[5]: Leaving directory '/<>/src/library/base' make[4]: Leaving directory '/<>/src/library/base' make[4]: Entering directory '/<>/src/library/tools' building package 'tools' make[5]: Entering directory '/<>/src/library/tools' all.R is unchanged make[5]: Leaving directory '/<>/src/library/tools' make[5]: Entering directory '/<>/src/library/tools' make[6]: Entering directory '/<>/src/library/tools/src' make[7]: Entering directory '/<>/src/library/tools/src' ../../../../library/tools/libs/tools.so is unchanged make[7]: Leaving directory '/<>/src/library/tools/src' make[6]: Leaving directory '/<>/src/library/tools/src' make[5]: Leaving directory '/<>/src/library/tools' make[5]: Entering directory '/<>/src/library/tools' installing 'sysdata.rda' make[5]: Leaving directory '/<>/src/library/tools' make[4]: Leaving directory '/<>/src/library/tools' make[4]: Entering directory '/<>/src/library/compiler' building package 'compiler' make[5]: Entering directory '/<>/src/library/compiler' all.R is unchanged make[5]: Leaving directory '/<>/src/library/compiler' make[5]: Entering directory '/<>/src/library/compiler' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/compiler' make[4]: Leaving directory '/<>/src/library/compiler' make[4]: Entering directory '/<>/src/library/base' make[4]: Nothing to be done for 'mklazycomp'. make[4]: Leaving directory '/<>/src/library/base' make[4]: Entering directory '/<>/src/library/tools' make[4]: Nothing to be done for 'mklazycomp'. make[4]: Leaving directory '/<>/src/library/tools' make[4]: Entering directory '/<>/src/library/utils' building package 'utils' make[5]: Entering directory '/<>/src/library/utils' all.R is unchanged make[5]: Nothing to be done for 'iconvlist'. make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' make[6]: Entering directory '/<>/src/library/utils/src' make[7]: Entering directory '/<>/src/library/utils/src' ../../../../library/utils/libs/utils.so is unchanged make[7]: Leaving directory '/<>/src/library/utils/src' make[6]: Leaving directory '/<>/src/library/utils/src' make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' installing 'sysdata.rda' make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/utils' make[4]: Leaving directory '/<>/src/library/utils' make[4]: Entering directory '/<>/src/library/grDevices' building package 'grDevices' make[5]: Entering directory '/<>/src/library/grDevices' all.R is unchanged make[5]: Leaving directory '/<>/src/library/grDevices' make[5]: Entering directory '/<>/src/library/grDevices' make[6]: Entering directory '/<>/src/library/grDevices/src' make[7]: Entering directory '/<>/src/library/grDevices/src' ../../../../library/grDevices/libs/grDevices.so is unchanged make[8]: Entering directory '/<>/src/library/grDevices/src/cairo' make[9]: Entering directory '/<>/src/library/grDevices/src/cairo' make[10]: Entering directory '/<>/src/library/grDevices/src/cairo' make[10]: 'cairo.so' is up to date. make[10]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[9]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[8]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[7]: Leaving directory '/<>/src/library/grDevices/src' make[6]: Leaving directory '/<>/src/library/grDevices/src' make[5]: Leaving directory '/<>/src/library/grDevices' make[5]: Entering directory '/<>/src/library/grDevices' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/grDevices' make[4]: Leaving directory '/<>/src/library/grDevices' make[4]: Entering directory '/<>/src/library/graphics' building package 'graphics' make[5]: Entering directory '/<>/src/library/graphics' all.R is unchanged make[5]: Leaving directory '/<>/src/library/graphics' make[5]: Entering directory '/<>/src/library/graphics' make[6]: Entering directory '/<>/src/library/graphics/src' make[7]: Entering directory '/<>/src/library/graphics/src' ../../../../library/graphics/libs/graphics.so is unchanged make[7]: Leaving directory '/<>/src/library/graphics/src' make[6]: Leaving directory '/<>/src/library/graphics/src' make[5]: Leaving directory '/<>/src/library/graphics' make[5]: Entering directory '/<>/src/library/graphics' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/graphics' make[4]: Leaving directory '/<>/src/library/graphics' make[4]: Entering directory '/<>/src/library/stats' building package 'stats' make[5]: Entering directory '/<>/src/library/stats' all.R is unchanged make[5]: Leaving directory '/<>/src/library/stats' make[5]: Entering directory '/<>/src/library/stats' make[6]: Entering directory '/<>/src/library/stats/src' make[7]: Entering directory '/<>/src/library/stats/src' ../../../../library/stats/libs/stats.so is unchanged make[7]: Leaving directory '/<>/src/library/stats/src' make[6]: Leaving directory '/<>/src/library/stats/src' make[5]: Leaving directory '/<>/src/library/stats' make[5]: Entering directory '/<>/src/library/stats' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/stats' make[4]: Leaving directory '/<>/src/library/stats' make[4]: Entering directory '/<>/src/library/datasets' building package 'datasets' make[5]: Entering directory '/<>/src/library/datasets' make[5]: Leaving directory '/<>/src/library/datasets' make[4]: Leaving directory '/<>/src/library/datasets' make[4]: Entering directory '/<>/src/library/methods' building package 'methods' make[5]: Entering directory '/<>/src/library/methods' all.R is unchanged make[5]: Leaving directory '/<>/src/library/methods' make[5]: Entering directory '/<>/src/library/methods' make[6]: Entering directory '/<>/src/library/methods/src' make[7]: Entering directory '/<>/src/library/methods/src' ../../../../library/methods/libs/methods.so is unchanged make[7]: Leaving directory '/<>/src/library/methods/src' make[6]: Leaving directory '/<>/src/library/methods/src' make[5]: Leaving directory '/<>/src/library/methods' make[5]: Entering directory '/<>/src/library/methods' make[5]: Nothing to be done for 'RfilesLazy'. make[5]: Leaving directory '/<>/src/library/methods' make[4]: Leaving directory '/<>/src/library/methods' make[4]: Entering directory '/<>/src/library/grid' building package 'grid' make[5]: Entering directory '/<>/src/library/grid' all.R is unchanged make[5]: Leaving directory '/<>/src/library/grid' make[5]: Entering directory '/<>/src/library/grid' make[6]: Entering directory '/<>/src/library/grid/src' make[7]: Entering directory '/<>/src/library/grid/src' ../../../../library/grid/libs/grid.so is unchanged make[7]: Leaving directory '/<>/src/library/grid/src' make[6]: Leaving directory '/<>/src/library/grid/src' make[5]: Leaving directory '/<>/src/library/grid' make[5]: Entering directory '/<>/src/library/grid' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/grid' make[4]: Leaving directory '/<>/src/library/grid' make[4]: Entering directory '/<>/src/library/splines' building package 'splines' make[5]: Entering directory '/<>/src/library/splines' all.R is unchanged make[5]: Leaving directory '/<>/src/library/splines' make[5]: Entering directory '/<>/src/library/splines' make[6]: Entering directory '/<>/src/library/splines/src' make[7]: Entering directory '/<>/src/library/splines/src' ../../../../library/splines/libs/splines.so is unchanged make[7]: Leaving directory '/<>/src/library/splines/src' make[6]: Leaving directory '/<>/src/library/splines/src' make[5]: Leaving directory '/<>/src/library/splines' make[5]: Entering directory '/<>/src/library/splines' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/splines' make[4]: Leaving directory '/<>/src/library/splines' make[4]: Entering directory '/<>/src/library/stats4' building package 'stats4' make[5]: Entering directory '/<>/src/library/stats4' all.R is unchanged make[5]: Leaving directory '/<>/src/library/stats4' make[5]: Entering directory '/<>/src/library/stats4' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/stats4' make[4]: Leaving directory '/<>/src/library/stats4' make[4]: Entering directory '/<>/src/library/tcltk' building package 'tcltk' all.R is unchanged make[5]: Entering directory '/<>/src/library/tcltk' make[5]: Leaving directory '/<>/src/library/tcltk' make[5]: Entering directory '/<>/src/library/tcltk/src' make[6]: Entering directory '/<>/src/library/tcltk/src' ../../../../library/tcltk/libs/tcltk.so is unchanged make[6]: Leaving directory '/<>/src/library/tcltk/src' make[5]: Leaving directory '/<>/src/library/tcltk/src' make[5]: Entering directory '/<>/src/library/tcltk' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/tcltk' make[4]: Leaving directory '/<>/src/library/tcltk' make[4]: Entering directory '/<>/src/library/parallel' building package 'parallel' make[5]: Entering directory '/<>/src/library/parallel' all.R is unchanged make[5]: Leaving directory '/<>/src/library/parallel' make[5]: Entering directory '/<>/src/library/parallel' make[6]: Entering directory '/<>/src/library/parallel/src' make[7]: Entering directory '/<>/src/library/parallel/src' ../../../../library/parallel/libs/parallel.so is unchanged make[7]: Leaving directory '/<>/src/library/parallel/src' make[6]: Leaving directory '/<>/src/library/parallel/src' make[5]: Leaving directory '/<>/src/library/parallel' make[5]: Entering directory '/<>/src/library/parallel' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/parallel' make[4]: Leaving directory '/<>/src/library/parallel' make[4]: Entering directory '/<>/src/library/base' make[4]: Leaving directory '/<>/src/library/base' installing parsed NAMESPACE files make[3]: Leaving directory '/<>/src/library' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>/tests' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/<>/tests' you should 'make docs' now ... make[2]: Entering directory '/<>/doc' creating doc/NEWS creating doc/NEWS.pdf make[3]: Entering directory '/<>/doc/manual' creating doc/manual/R-FAQ.html creating doc/manual/version.texi creating doc/manual/R-admin.html creating doc/manual/R-data.html creating doc/manual/R-exts.html R-exts.texi:3839: warning: @noindent is useless inside of a paragraph R-exts.texi:15252: warning: unexpected argument on @tex line: $\pi :=$ @code{prob[]}, R-exts.texi:15252: warning: unexpected argument on @iftex line: @tex $\pi :=$ @code{prob[]}, @end tex creating doc/manual/R-intro.html R-intro.texi:6748: warning: @pxref should not appear on @item line creating doc/manual/R-ints.html creating doc/manual/R-lang.html make[4]: Entering directory '/<>/doc/html' make[4]: Leaving directory '/<>/doc/html' make[3]: Leaving directory '/<>/doc/manual' make[2]: Leaving directory '/<>/doc' make[2]: Entering directory '/<>/src/library' make[3]: Entering directory '/<>/src/library' installing parsed Rd make[4]: Entering directory '/<>/src/library' base stats utils methods graphics grDevices datasets grid tools tcltk splines stats4 compiler parallel make[4]: Leaving directory '/<>/src/library' make[3]: Leaving directory '/<>/src/library' make[3]: Entering directory '/<>/src/library' building/updating package metadata ... make[3]: Leaving directory '/<>/src/library' make[3]: Entering directory '/<>/src/library' writing package indices make[4]: Entering directory '/<>/src/library' make[4]: Leaving directory '/<>/src/library' make[3]: Leaving directory '/<>/src/library' make[2]: Leaving directory '/<>/src/library' make[1]: Leaving directory '/<>' /usr/bin/make javaconf make[1]: Entering directory '/<>' make[2]: Entering directory '/<>/m4' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/<>/m4' make[2]: Entering directory '/<>/tools' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/<>/tools' make[2]: Entering directory '/<>/doc' make[3]: Entering directory '/<>/doc/html' make[3]: Leaving directory '/<>/doc/html' make[3]: Entering directory '/<>/doc/manual' make[3]: Nothing to be done for 'R'. make[3]: Leaving directory '/<>/doc/manual' make[2]: Leaving directory '/<>/doc' make[2]: Entering directory '/<>/etc' make[2]: Leaving directory '/<>/etc' make[2]: Entering directory '/<>/share' make[2]: Leaving directory '/<>/share' make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src/scripts' make[4]: Entering directory '/<>/src/scripts' make[4]: Leaving directory '/<>/src/scripts' make[3]: Leaving directory '/<>/src/scripts' make[3]: Entering directory '/<>/src/include' make[4]: Entering directory '/<>/src/include/R_ext' make[4]: Nothing to be done for 'R'. make[4]: Leaving directory '/<>/src/include/R_ext' make[3]: Leaving directory '/<>/src/include' make[3]: Entering directory '/<>/src/extra' make[4]: Entering directory '/<>/src/extra/tre' make[5]: Entering directory '/<>/src/extra/tre' make[5]: 'Makedeps' is up to date. make[5]: Leaving directory '/<>/src/extra/tre' make[5]: Entering directory '/<>/src/extra/tre' make[5]: 'libtre.a' is up to date. make[5]: Leaving directory '/<>/src/extra/tre' make[4]: Leaving directory '/<>/src/extra/tre' make[3]: Leaving directory '/<>/src/extra' make[3]: Entering directory '/<>/src/appl' make[4]: Entering directory '/<>/src/appl' make[4]: 'libappl.a' is up to date. make[4]: Leaving directory '/<>/src/appl' #@/usr/bin/make install-Linpack make[3]: Leaving directory '/<>/src/appl' make[3]: Entering directory '/<>/src/nmath' make[4]: Entering directory '/<>/src/nmath' make[4]: 'libnmath.a' is up to date. make[4]: Leaving directory '/<>/src/nmath' make[3]: Leaving directory '/<>/src/nmath' make[3]: Entering directory '/<>/src/unix' make[4]: Entering directory '/<>/src/unix' make[4]: 'libunix.a' is up to date. make[4]: Leaving directory '/<>/src/unix' make[4]: Entering directory '/<>/src/unix' gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -DR_HOME='"/<>"' \ -o Rscript ./Rscript.c make[4]: Leaving directory '/<>/src/unix' make[3]: Leaving directory '/<>/src/unix' make[3]: Entering directory '/<>/src/main' make[4]: Entering directory '/<>/src/main' make[5]: Entering directory '/<>/src/main' /<>/lib/libR.so is unchanged make[5]: Leaving directory '/<>/src/main' make[4]: Leaving directory '/<>/src/main' make[4]: Entering directory '/<>/src/main' make[5]: Entering directory '/<>/src/main' /<>/bin/exec/R is unchanged make[5]: Leaving directory '/<>/src/main' make[4]: Leaving directory '/<>/src/main' make[3]: Leaving directory '/<>/src/main' make[3]: Entering directory '/<>/src/modules' make[4]: Entering directory '/<>/src/modules/internet' make[5]: Entering directory '/<>/src/modules/internet' make[5]: 'internet.so' is up to date. make[5]: Leaving directory '/<>/src/modules/internet' make[4]: Leaving directory '/<>/src/modules/internet' make[4]: Entering directory '/<>/src/modules/lapack' make[5]: Entering directory '/<>/src/modules/lapack' make[5]: 'lapack.so' is up to date. make[5]: Leaving directory '/<>/src/modules/lapack' make[4]: Leaving directory '/<>/src/modules/lapack' make[4]: Entering directory '/<>/src/modules/X11' make[5]: Entering directory '/<>/src/modules/X11' make[5]: 'R_X11.so' is up to date. make[5]: 'R_de.so' is up to date. make[5]: Leaving directory '/<>/src/modules/X11' make[5]: Entering directory '/<>/src/modules/X11' /<>/modules/R_X11.so is unchanged /<>/modules/R_de.so is unchanged make[5]: Leaving directory '/<>/src/modules/X11' make[4]: Leaving directory '/<>/src/modules/X11' make[3]: Leaving directory '/<>/src/modules' make[3]: Entering directory '/<>/src/library' make[4]: Entering directory '/<>/src/library/profile' building system startup profile make[4]: Leaving directory '/<>/src/library/profile' make[4]: Entering directory '/<>/src/library/translations' building package 'translations' make[5]: Entering directory '/<>/src/library/translations' make[5]: Leaving directory '/<>/src/library/translations' make[4]: Leaving directory '/<>/src/library/translations' make[4]: Entering directory '/<>/src/library/base' building package 'base' make[5]: Entering directory '/<>/src/library/base' all.R is unchanged make[5]: Leaving directory '/<>/src/library/base' make[4]: Leaving directory '/<>/src/library/base' make[4]: Entering directory '/<>/src/library/tools' building package 'tools' make[5]: Entering directory '/<>/src/library/tools' all.R is unchanged make[5]: Leaving directory '/<>/src/library/tools' make[5]: Entering directory '/<>/src/library/tools' make[6]: Entering directory '/<>/src/library/tools/src' make[7]: Entering directory '/<>/src/library/tools/src' ../../../../library/tools/libs/tools.so is unchanged make[7]: Leaving directory '/<>/src/library/tools/src' make[6]: Leaving directory '/<>/src/library/tools/src' make[5]: Leaving directory '/<>/src/library/tools' make[5]: Entering directory '/<>/src/library/tools' installing 'sysdata.rda' make[5]: Leaving directory '/<>/src/library/tools' make[4]: Leaving directory '/<>/src/library/tools' make[4]: Entering directory '/<>/src/library/compiler' building package 'compiler' make[5]: Entering directory '/<>/src/library/compiler' all.R is unchanged make[5]: Leaving directory '/<>/src/library/compiler' make[5]: Entering directory '/<>/src/library/compiler' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/compiler' make[4]: Leaving directory '/<>/src/library/compiler' make[4]: Entering directory '/<>/src/library/base' make[4]: Nothing to be done for 'mklazycomp'. make[4]: Leaving directory '/<>/src/library/base' make[4]: Entering directory '/<>/src/library/tools' make[4]: Nothing to be done for 'mklazycomp'. make[4]: Leaving directory '/<>/src/library/tools' make[4]: Entering directory '/<>/src/library/utils' building package 'utils' make[5]: Entering directory '/<>/src/library/utils' all.R is unchanged make[5]: Nothing to be done for 'iconvlist'. make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' make[6]: Entering directory '/<>/src/library/utils/src' make[7]: Entering directory '/<>/src/library/utils/src' ../../../../library/utils/libs/utils.so is unchanged make[7]: Leaving directory '/<>/src/library/utils/src' make[6]: Leaving directory '/<>/src/library/utils/src' make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' installing 'sysdata.rda' make[5]: Leaving directory '/<>/src/library/utils' make[5]: Entering directory '/<>/src/library/utils' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/utils' make[4]: Leaving directory '/<>/src/library/utils' make[4]: Entering directory '/<>/src/library/grDevices' building package 'grDevices' make[5]: Entering directory '/<>/src/library/grDevices' all.R is unchanged make[5]: Leaving directory '/<>/src/library/grDevices' make[5]: Entering directory '/<>/src/library/grDevices' make[6]: Entering directory '/<>/src/library/grDevices/src' make[7]: Entering directory '/<>/src/library/grDevices/src' ../../../../library/grDevices/libs/grDevices.so is unchanged make[8]: Entering directory '/<>/src/library/grDevices/src/cairo' make[9]: Entering directory '/<>/src/library/grDevices/src/cairo' make[10]: Entering directory '/<>/src/library/grDevices/src/cairo' make[10]: 'cairo.so' is up to date. make[10]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[9]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[8]: Leaving directory '/<>/src/library/grDevices/src/cairo' make[7]: Leaving directory '/<>/src/library/grDevices/src' make[6]: Leaving directory '/<>/src/library/grDevices/src' make[5]: Leaving directory '/<>/src/library/grDevices' make[5]: Entering directory '/<>/src/library/grDevices' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/grDevices' make[4]: Leaving directory '/<>/src/library/grDevices' make[4]: Entering directory '/<>/src/library/graphics' building package 'graphics' make[5]: Entering directory '/<>/src/library/graphics' all.R is unchanged make[5]: Leaving directory '/<>/src/library/graphics' make[5]: Entering directory '/<>/src/library/graphics' make[6]: Entering directory '/<>/src/library/graphics/src' make[7]: Entering directory '/<>/src/library/graphics/src' ../../../../library/graphics/libs/graphics.so is unchanged make[7]: Leaving directory '/<>/src/library/graphics/src' make[6]: Leaving directory '/<>/src/library/graphics/src' make[5]: Leaving directory '/<>/src/library/graphics' make[5]: Entering directory '/<>/src/library/graphics' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/graphics' make[4]: Leaving directory '/<>/src/library/graphics' make[4]: Entering directory '/<>/src/library/stats' building package 'stats' make[5]: Entering directory '/<>/src/library/stats' all.R is unchanged make[5]: Leaving directory '/<>/src/library/stats' make[5]: Entering directory '/<>/src/library/stats' make[6]: Entering directory '/<>/src/library/stats/src' make[7]: Entering directory '/<>/src/library/stats/src' ../../../../library/stats/libs/stats.so is unchanged make[7]: Leaving directory '/<>/src/library/stats/src' make[6]: Leaving directory '/<>/src/library/stats/src' make[5]: Leaving directory '/<>/src/library/stats' make[5]: Entering directory '/<>/src/library/stats' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/stats' make[4]: Leaving directory '/<>/src/library/stats' make[4]: Entering directory '/<>/src/library/datasets' building package 'datasets' make[5]: Entering directory '/<>/src/library/datasets' make[5]: Leaving directory '/<>/src/library/datasets' make[4]: Leaving directory '/<>/src/library/datasets' make[4]: Entering directory '/<>/src/library/methods' building package 'methods' make[5]: Entering directory '/<>/src/library/methods' all.R is unchanged make[5]: Leaving directory '/<>/src/library/methods' make[5]: Entering directory '/<>/src/library/methods' make[6]: Entering directory '/<>/src/library/methods/src' make[7]: Entering directory '/<>/src/library/methods/src' ../../../../library/methods/libs/methods.so is unchanged make[7]: Leaving directory '/<>/src/library/methods/src' make[6]: Leaving directory '/<>/src/library/methods/src' make[5]: Leaving directory '/<>/src/library/methods' make[5]: Entering directory '/<>/src/library/methods' make[5]: Nothing to be done for 'RfilesLazy'. make[5]: Leaving directory '/<>/src/library/methods' make[4]: Leaving directory '/<>/src/library/methods' make[4]: Entering directory '/<>/src/library/grid' building package 'grid' make[5]: Entering directory '/<>/src/library/grid' all.R is unchanged make[5]: Leaving directory '/<>/src/library/grid' make[5]: Entering directory '/<>/src/library/grid' make[6]: Entering directory '/<>/src/library/grid/src' make[7]: Entering directory '/<>/src/library/grid/src' ../../../../library/grid/libs/grid.so is unchanged make[7]: Leaving directory '/<>/src/library/grid/src' make[6]: Leaving directory '/<>/src/library/grid/src' make[5]: Leaving directory '/<>/src/library/grid' make[5]: Entering directory '/<>/src/library/grid' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/grid' make[4]: Leaving directory '/<>/src/library/grid' make[4]: Entering directory '/<>/src/library/splines' building package 'splines' make[5]: Entering directory '/<>/src/library/splines' all.R is unchanged make[5]: Leaving directory '/<>/src/library/splines' make[5]: Entering directory '/<>/src/library/splines' make[6]: Entering directory '/<>/src/library/splines/src' make[7]: Entering directory '/<>/src/library/splines/src' ../../../../library/splines/libs/splines.so is unchanged make[7]: Leaving directory '/<>/src/library/splines/src' make[6]: Leaving directory '/<>/src/library/splines/src' make[5]: Leaving directory '/<>/src/library/splines' make[5]: Entering directory '/<>/src/library/splines' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/splines' make[4]: Leaving directory '/<>/src/library/splines' make[4]: Entering directory '/<>/src/library/stats4' building package 'stats4' make[5]: Entering directory '/<>/src/library/stats4' all.R is unchanged make[5]: Leaving directory '/<>/src/library/stats4' make[5]: Entering directory '/<>/src/library/stats4' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/stats4' make[4]: Leaving directory '/<>/src/library/stats4' make[4]: Entering directory '/<>/src/library/tcltk' building package 'tcltk' all.R is unchanged make[5]: Entering directory '/<>/src/library/tcltk' make[5]: Leaving directory '/<>/src/library/tcltk' make[5]: Entering directory '/<>/src/library/tcltk/src' make[6]: Entering directory '/<>/src/library/tcltk/src' ../../../../library/tcltk/libs/tcltk.so is unchanged make[6]: Leaving directory '/<>/src/library/tcltk/src' make[5]: Leaving directory '/<>/src/library/tcltk/src' make[5]: Entering directory '/<>/src/library/tcltk' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/tcltk' make[4]: Leaving directory '/<>/src/library/tcltk' make[4]: Entering directory '/<>/src/library/parallel' building package 'parallel' make[5]: Entering directory '/<>/src/library/parallel' all.R is unchanged make[5]: Leaving directory '/<>/src/library/parallel' make[5]: Entering directory '/<>/src/library/parallel' make[6]: Entering directory '/<>/src/library/parallel/src' make[7]: Entering directory '/<>/src/library/parallel/src' ../../../../library/parallel/libs/parallel.so is unchanged make[7]: Leaving directory '/<>/src/library/parallel/src' make[6]: Leaving directory '/<>/src/library/parallel/src' make[5]: Leaving directory '/<>/src/library/parallel' make[5]: Entering directory '/<>/src/library/parallel' make[5]: Nothing to be done for 'mklazycomp'. make[5]: Leaving directory '/<>/src/library/parallel' make[4]: Leaving directory '/<>/src/library/parallel' make[4]: Entering directory '/<>/src/library/base' make[4]: Leaving directory '/<>/src/library/base' installing parsed NAMESPACE files make[3]: Leaving directory '/<>/src/library' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>/tests' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/<>/tests' make[2]: Entering directory '/<>' configuring Java ... Java interpreter : /usr/lib/jvm/default-java/bin/java Java version : 17.0.9 Java home path : /usr/lib/jvm/default-java Java compiler : /usr/lib/jvm/default-java/bin/javac Java headers gen.: Java archive tool: /usr/lib/jvm/default-java/bin/jar trying to compile and link a JNI program detected JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux detected JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm using C compiler: ‘gcc (Ubuntu 13.2.0-9ubuntu1) 13.2.0’ make[3]: Entering directory '/tmp/Rjavareconf.UVbYkZ' gcc -I"/<>/include" -DNDEBUG -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -fPIC -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -c conftest.c -o conftest.o gcc -shared -L/<>/lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -o conftest.so conftest.o -L/usr/lib/jvm/default-java/lib/server -ljvm -L/<>/lib -lR make[3]: Leaving directory '/tmp/Rjavareconf.UVbYkZ' JAVA_HOME : /usr/lib/jvm/default-java Java library path: $(JAVA_HOME)/lib/server JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm Updating Java configuration in /<> Done. make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' touch make-arch-stamp fakeroot debian/rules binary-arch *** install-arch *** dh_testdir dh_testroot dh_prep -a dh_installdirs -A /<>/debian/r-base-core /usr/bin/make DESTDIR=/<>/debian/r-base-core install make[1]: Entering directory '/<>' make[2]: Entering directory '/<>/m4' make[2]: Nothing to be done for 'install'. make[2]: Leaving directory '/<>/m4' make[2]: Entering directory '/<>/tools' make[2]: Nothing to be done for 'install'. make[2]: Leaving directory '/<>/tools' make[2]: Entering directory '/<>/doc' installing doc ... mkdir -p -- /<>/debian/r-base-core/usr/share/R/doc mkdir -p -- /<>/debian/r-base-core/usr/share/man/man1 make[3]: Entering directory '/<>/doc/html' installing doc/html ... mkdir -p -- /<>/debian/r-base-core/usr/share/R/doc/html make[3]: Leaving directory '/<>/doc/html' make[3]: Entering directory '/<>/doc/manual' installing doc/manual ... mkdir -p -- /<>/debian/r-base-core/usr/share/R/doc/manual mkdir -p -- /<>/debian/r-base-core/usr/share/R/doc/manual/images make[3]: Leaving directory '/<>/doc/manual' make[2]: Leaving directory '/<>/doc' make[2]: Entering directory '/<>/etc' mkdir -p -- /<>/debian/r-base-core/usr/lib/R/etc installing etc ... make[2]: Leaving directory '/<>/etc' make[2]: Entering directory '/<>/share' installing share ... mkdir -p -- /<>/debian/r-base-core/usr/share/R/share mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/R mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/dictionaries mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/encodings mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/java mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/licenses mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/make mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/Rd mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/Rd/macros mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/sh mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/texmf mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/texmf/bibtex/bib mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/texmf/bibtex/bst mkdir -p -- /<>/debian/r-base-core/usr/share/R/share/texmf/tex/latex make[2]: Leaving directory '/<>/share' make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src/scripts' mkdir -p -- /<>/debian/r-base-core/usr/lib/R/bin make[3]: Leaving directory '/<>/src/scripts' make[3]: Entering directory '/<>/src/include' make[4]: Entering directory '/<>/src/include/R_ext' mkdir -p -- /<>/debian/r-base-core/usr/share/R/include/R_ext make[4]: Leaving directory '/<>/src/include/R_ext' make[3]: Leaving directory '/<>/src/include' make[3]: Entering directory '/<>/src/extra' make[4]: Entering directory '/<>/src/extra/blas' make[4]: Nothing to be done for 'install'. make[4]: Leaving directory '/<>/src/extra/blas' make[4]: Entering directory '/<>/src/extra/tre' make[4]: Nothing to be done for 'install'. make[4]: Leaving directory '/<>/src/extra/tre' make[4]: Entering directory '/<>/src/extra/tzone' make[4]: Nothing to be done for 'install'. make[4]: Leaving directory '/<>/src/extra/tzone' make[4]: Entering directory '/<>/src/extra/xdr' make[4]: Nothing to be done for 'install'. make[4]: Leaving directory '/<>/src/extra/xdr' make[4]: Entering directory '/<>/src/extra/intl' make[4]: Nothing to be done for 'install'. make[4]: Leaving directory '/<>/src/extra/intl' make[3]: Leaving directory '/<>/src/extra' make[3]: Entering directory '/<>/src/appl' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/<>/src/appl' make[3]: Entering directory '/<>/src/nmath' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/<>/src/nmath' make[3]: Entering directory '/<>/src/unix' gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -DR_HOME='"/usr/lib/R"' \ -o Rscript ./Rscript.c mkdir -p -- /<>/debian/r-base-core/usr/lib/pkgconfig make[3]: Leaving directory '/<>/src/unix' make[3]: Entering directory '/<>/src/main' mkdir -p -- /<>/debian/r-base-core/usr/lib/R/bin/exec make[4]: Entering directory '/<>/src/main' make[4]: Leaving directory '/<>/src/main' make[4]: Entering directory '/<>/src/main' mkdir -p -- /<>/debian/r-base-core/usr/lib/R/lib make[4]: Leaving directory '/<>/src/main' make[3]: Leaving directory '/<>/src/main' make[3]: Entering directory '/<>/src/modules' make[4]: Entering directory '/<>/src/modules/internet' mkdir -p -- /<>/debian/r-base-core/usr/lib/R/modules make[4]: Leaving directory '/<>/src/modules/internet' make[4]: Entering directory '/<>/src/modules/lapack' make[4]: Leaving directory '/<>/src/modules/lapack' make[4]: Entering directory '/<>/src/modules/X11' make[4]: Leaving directory '/<>/src/modules/X11' make[3]: Leaving directory '/<>/src/modules' make[3]: Entering directory '/<>/src/library' mkdir -p -- /<>/debian/r-base-core/usr/lib/R/library installing packages ... building HTML index ... make[3]: Leaving directory '/<>/src/library' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>/tests' make[2]: Nothing to be done for 'install'. make[2]: Leaving directory '/<>/tests' make[1]: Leaving directory '/<>' (cd src/unix; \ rm -vf Rscript /<>/debian/r-base-core/usr/bin/Rscript; \ /usr/bin/make CFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CFLAGS` -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT" \ CXXFLAGS="`DEB_BUILD_MAINT_OPTIONS=optimize=-lto dpkg-buildflags --get CFLAGS` -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT" \ FFLAGS="-g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -fdebug-prefix-map=/<>=/usr/src/r-base-4.3.2-1build1 -D_REENTRANT" \ CC=gcc \ CXX=g++ \ F77=gfortran \ RHOME=/usr/lib/R \ DESTDIR=/<>/debian/r-base-core \ install-Rscript ) removed 'Rscript' removed '/<>/debian/r-base-core/usr/bin/Rscript' make[1]: Entering directory '/<>/src/unix' gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -g -O3 -fno-omit-frame-pointer -ffile-prefix-map=/<>/src/unix=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=3 -D_REENTRANT -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -DR_HOME='"/usr/lib/R"' \ -o Rscript ./Rscript.c make[1]: Leaving directory '/<>/src/unix' #ls -ltr /<>/debian/r-base-core/usr/bin/ #strings src/unix/Rscript cp -vax src/unix/Rscript /<>/debian/r-base-core/usr/bin/ 'src/unix/Rscript' -> '/<>/debian/r-base-core/usr/bin/Rscript' #ls -ltr /<>/debian/r-base-core/usr/bin/ #strings /<>/debian/r-base-core/usr/bin/Rscript (cd src/nmath/standalone; \ /usr/bin/make DESTDIR=/<>/debian/r-base-core install ) make[1]: Entering directory '/<>/src/nmath/standalone' make[2]: Entering directory '/<>/src/include' make[2]: 'Rmath.h' is up to date. make[2]: Leaving directory '/<>/src/include' /<>/debian/r-base-core/usr/share/R/include/Rmath.h is unchanged make[1]: Leaving directory '/<>/src/nmath/standalone' chmod a+x /<>/debian/r-base-core/usr/share/R/share/sh/echo.sh rm -v /<>/debian/r-base-core/usr/lib/R/COPYING removed '/<>/debian/r-base-core/usr/lib/R/COPYING' (cd /<>/debian/r-base-core/usr/lib/R/; \ ln -s ../../share/common-licenses/GPL-2 COPYING) rm -v /<>/debian/r-base-core/usr/share/R/doc/COPYING removed '/<>/debian/r-base-core/usr/share/R/doc/COPYING' (cd /<>/debian/r-base-core/usr/share/R/doc; \ ln -s ../../../share/common-licenses/GPL-2 COPYING) (cd /<>/debian/r-base-core/usr/share/texmf/tex/latex && \ ln -s ../../../R/share/texmf R) dh_movefiles --sourcedir=debian/r-base-core -pr-doc-html dh_movefiles --sourcedir=debian/r-base-core -pr-base-html make prefix=/<>/debian/r-base-core/usr \ rdocdir=/<>/debian/r-base-core/usr/share/R/doc \ install-pdf make[1]: Entering directory '/<>' make[2]: Entering directory '/<>/doc/manual' creating doc/manual/version.tex collecting LaTeX docs for package 'base' ... Converting parsed Rd's to LaTeX ............................................ collecting LaTeX docs for package 'tools' ... Converting parsed Rd's to LaTeX ...... collecting LaTeX docs for package 'utils' ... Converting parsed Rd's to LaTeX ................ collecting LaTeX docs for package 'grDevices' ... Converting parsed Rd's to LaTeX ....... collecting LaTeX docs for package 'graphics' ... Converting parsed Rd's to LaTeX ....... collecting LaTeX docs for package 'stats' ... Converting parsed Rd's to LaTeX ............................... collecting LaTeX docs for package 'datasets' ... Converting parsed Rd's to LaTeX ........ collecting LaTeX docs for package 'methods' ... Converting parsed Rd's to LaTeX ........ collecting LaTeX docs for package 'grid' ... Converting parsed Rd's to LaTeX .......... collecting LaTeX docs for package 'splines' ... Converting parsed Rd's to LaTeX . collecting LaTeX docs for package 'stats4' ... Converting parsed Rd's to LaTeX . collecting LaTeX docs for package 'tcltk' ... Converting parsed Rd's to LaTeX . collecting LaTeX docs for package 'compiler' ... Converting parsed Rd's to LaTeX collecting LaTeX docs for package 'parallel' ... Converting parsed Rd's to LaTeX . PDF/LaTeX documentation: full reference index ... This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./fullrefman.tex LaTeX2e <2023-11-01> L3 programming layer <2023-11-09> (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2023/05/17 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (../../share/texmf/tex/latex/Rd.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. 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(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) (/usr/share/texlive/texmf-dist/tex/latex/jknapltx/ursfs.fd) [1{/usr/share/texli ve/texmf-dist/fonts/enc/dvips/inconsolata/i4-t1-0.enc}] [2] Underfull \hbox (badness 6252) in paragraph at lines 143--151 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/zi4/m/n/10 x [ ]\T1/ptm/m/n/10 such that []\T1/zi4/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/ptm/m/n/10 equals []\T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits []\T 1/ptm/m/n/10 if []\T1/zi4/m/n/10 double.base Underfull \hbox (badness 10000) in paragraph at lines 143--151 []\T1/ptm/m/n/10 is 2 or []\T1/zi4/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0 ; oth-er-wise, it is []\T1/zi4/m/n/10 (double.base Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/z i4/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . As Underfull \hbox (badness 4995) in paragraph at lines 143--151 []\T1/zi4/m/n/10 double.neg.ulp.digits []\T1/ptm/m/n/10 is bounded be-low by [] \T1/zi4/m/n/10 -(double.digits + 3)[]\T1/ptm/m/n/10 , [3] [4] [5] Underfull \hbox (badness 1178) in paragraph at lines 333--336 []\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][][]\T1/zi4/m/ n/10 options[][][]("pkgType")[]\T1/ptm/m/n/10 . Val-ues [6] [7] [8] [9] Underfull \hbox (badness 2556) in paragraph at lines 571--577 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/zi4/m/n/10 insertions[]\T1/ptm/m/n/10 ', [10] [11] [12] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [13{/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] (/usr/share/texlive/texmf-dist/tex/latex/base/t1cmtt.fd) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [24] [25] Underfull \hbox (badness 10000) in paragraph at lines 1611--1617 [26] [27] [28] [29] [30] [31] [32] Underfull \hbox (badness 1242) in paragraph at lines 2023--2026 []\T1/ptm/m/n/10 Since \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.3.0, the \T1/ptm/m/it/ 10 de-fault \T1/ptm/m/n/10 method will call []\T1/zi4/m/n/10 as.data.frame.vect or() []\T1/ptm/m/n/10 for atomic (as by Underfull \hbox (badness 10000) in paragraph at lines 2027--2031 []\T1/ptm/m/n/10 Direct calls to []\T1/zi4/m/n/10 as.data.frame.() []\T1 /ptm/m/n/10 are still pos-si-ble (base pack-age!), for Underfull \hbox (badness 5490) in paragraph at lines 2027--2031 \T1/ptm/m/n/10 12 atomic base classes, but will dep-re-cated (al-ready vis-i-bl y by set-ting en-vi-ron-ment Underfull \hbox (badness 10000) in paragraph at lines 2027--2031 \T1/ptm/m/n/10 vari-able []\T1/zi4/m/n/10 _R_CHECK_AS_DATA_FRAME_EXPLICIT_METHO D_ []\T1/ptm/m/n/10 to non-empty) where call-ing [33] [34] [35] Overfull \hbox (26.27782pt too wide) in paragraph at lines 2267--2267 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] Underfull \hbox (badness 1721) in paragraph at lines 2933--2937 [][][]\T1/zi4/m/n/10 assign[][][] []\T1/ptm/m/n/10 (and its in-verse [][][]\T1/ zi4/m/n/10 get[][][][]\T1/ptm/m/n/10 ), for ``sub-assign-ment'' such as []\T1/z i4/m/n/10 x[i] <- v[]\T1/ptm/m/n/10 , see [][][]\T1/zi4/m/n/10 [<-[][][][]\T1/p tm/m/n/10 ; fur-ther, [47] [48] [49] [50] [51] [52] [53] Underfull \hbox (badness 2538) in paragraph at lines 3413--3416 []\T1/zi4/m/n/10 unCfillPOSIXlt(x) []\T1/ptm/m/n/10 is a fast [][]prim-i-tive[] [][] ver-sion of []\T1/zi4/m/n/10 balancePOSIXlt(x, fill.only=TRUE, [54] [55] [56] [57] [58] Underfull \vbox (badness 10000) has occurred while \output is active [59] [60] [61] [62] [63] [64] [65] Underfull \hbox (badness 10000) in paragraph at lines 4209--4211 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] Underfull \hbox (badness 2521) in paragraph at lines 5506--5508 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [87] [88] [89] [90] [91] [92] [93] [94] [95] [96] [97] [98] [99] [100] [101] [102] [103] [104] [105] Overfull \hbox (5.27168pt too wide) in paragraph at lines 6771--6771 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [106] [107] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] [118] Underfull \hbox (badness 1303) in paragraph at lines 7664--7671 []\T1/zi4/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/zi4/m/n/10 descri ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/zi4/m/n/10 "r" []\T1/ptm/m/n /10 only. This reads the Underfull \hbox (badness 2261) in paragraph at lines 7675--7680 \T1/zi4/m/n/10 / / github . com / astrand / xclip$[][]\T1/ptm/m/n/10 ) or []\T1 /zi4/m/n/10 xsel []\T1/ptm/m/n/10 ([][]$\T1/zi4/m/n/10 https : / / www . vergen et . net / ~conrad / software / [119] [120] Underfull \vbox (badness 10000) has occurred while \output is active [121] Underfull \vbox (badness 10000) has occurred while \output is active [122] [123] [124] [125] [126] [127] [128] [129] Underfull \hbox (badness 2096) in paragraph at lines 8354--8358 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [130] [131] Underfull \hbox (badness 2351) in paragraph at lines 8469--8472 [][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac -cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t able[][][][]\T1/ptm/m/n/10 , [132] [133] [134] [135] [136] Underfull \hbox (badness 4479) in paragraph at lines 8786--8797 [][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names), [137] [138] [139] [140] [141] [142] Underfull \hbox (badness 1629) in paragraph at lines 9216--9228 []\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a re ig-nored, and real times Underfull \hbox (badness 2875) in paragraph at lines 9216--9228 []\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19 69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19 69-12-31 [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] Underfull \hbox (badness 1178) in paragraph at lines 10064--10068 []\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names (see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de- [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188] [189] [190] [191] Underfull \hbox (badness 2744) in paragraph at lines 12398--12400 []\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma y lead to con-fu-sion (see [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223] Underfull \hbox (badness 2253) in paragraph at lines 14602--14604 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [224] Underfull \hbox (badness 1490) in paragraph at lines 14637--14640 []\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m a-tion is given about the [225] Underfull \hbox (badness 1565) in paragraph at lines 14719--14723 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym- bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][] []\T1/ptm/m/n/10 , and [226] Underfull \hbox (badness 4927) in paragraph at lines 14770--14772 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4 /m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with []\T1/zi4/m/n/10 fsep = [227] Underfull \hbox (badness 3148) in paragraph at lines 14872--14877 [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.fi les[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 help[][][][]\T1/ptm/m/n/10 ; [ ][][]\T1/zi4/m/n/10 RShowDoc[][][] []\T1/ptm/m/n/10 call []\T1/zi4/m/n/10 file. show() []\T1/ptm/m/n/10 for []\T1/zi4/m/n/10 type = "text"[]\T1/ptm/m/n/10 . Co n-sider [228] Underfull \hbox (badness 1466) in paragraph at lines 14919--14922 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T 1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and [229] [230] Underfull \hbox (badness 10000) in paragraph at lines 15050--15054 [][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1 /ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 15061--15064 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [231] [232] [233] [234] [235] Underfull \hbox (badness 3965) in paragraph at lines 15358--15362 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [236] [237] [238] [239] [240] [241] [242] [243] [244] [245] [246] [247] Underfull \hbox (badness 4429) in paragraph at lines 16147--16150 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] []\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for [248] [249] Underfull \hbox (badness 10000) in paragraph at lines 16253--16255 []\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , which calls []\T1/zi4/m/n/10 .format.zeros(*, [250] Underfull \hbox (badness 2035) in paragraph at lines 16326--16330 []\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1 0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0: for use within [251] Underfull \vbox (badness 10000) has occurred while \output is active [252] [253] [254] [255] [256] [257] [258] [259] [260] Underfull \hbox (badness 2452) in paragraph at lines 16939--16943 []\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron -ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 16939--16943 \T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_ GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and [261] [262] Underfull \hbox (badness 1092) in paragraph at lines 17112--17117 [][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t er the DLL has been loaded us-ing [263] [264] [265] [266] Underfull \hbox (badness 6741) in paragraph at lines 17365--17369 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [ ]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt m/m/n/10 , [267] [268] [269] [270] [271] [272] [273] [274] [275] [276] [277] Underfull \vbox (badness 10000) has occurred while \output is active [278] Underfull \vbox (badness 10000) has occurred while \output is active [279] [280] [281] [282] [283] [284] [285] [286] [287] [288] Underfull \hbox (badness 1769) in paragraph at lines 18861--18864 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [289] [290] [291] [292] [293] Underfull \hbox (badness 10000) in paragraph at lines 19156--19158 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww w . unicode . org / reports / tr35 / Underfull \hbox (badness 2088) in paragraph at lines 19162--19171 []\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T 1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu / [294] [295] [296] [297] [298] [299] [300] [301] [302] Underfull \hbox (badness 1442) in paragraph at lines 19770--19772 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see [303] [304] [305] [306] [307] Underfull \hbox (badness 10000) in paragraph at lines 20103--20109 [308] [309] [310] [311] Underfull \hbox (badness 1248) in paragraph at lines 20352--20355 []\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\ T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 " complex"[]\T1/ptm/m/n/10 , [312] [313] [314] [315] [316] Underfull \hbox (badness 4739) in paragraph at lines 20615--20617 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [317] [318] [319] [320] [321] [322] [323] [324] [325] [326] [327] [328] [329] [330] [331] [332] [333] Underfull \hbox (badness 2469) in paragraph at lines 21699--21704 []\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T 1/ptm/m/n/10 and [334] [335] Underfull \hbox (badness 1675) in paragraph at lines 21786--21795 []\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3189) in paragraph at lines 21796--21809 []\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini- tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set or empty, the Underfull \hbox (badness 10000) in paragraph at lines 21844--21847 []\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid- Underfull \hbox (badness 4752) in paragraph at lines 21844--21847 \T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may be opened by [336] [337] Underfull \hbox (badness 1014) in paragraph at lines 21978--21983 []\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if [338] [339] [340] [341] [342] [343] [344] [345] [346] [347] [348] [349] [350] Underfull \hbox (badness 1264) in paragraph at lines 22825--22833 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [351] Underfull \hbox (badness 4441) in paragraph at lines 22859--22862 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/ ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 , [352] [353] [354] [355] [356] [357] [358] [359] [360] [361] [362] [363] Underfull \hbox (badness 5231) in paragraph at lines 23669--23671 []\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm /m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) == [364] [365] [366] [367] [368] [369] [370] [371] [372] [373] [374] [375] [376] [377] [378] [379] [380] [381] Underfull \hbox (badness 10000) in paragraph at lines 24762--24768 [][]$\T1/zi4/m/n/10 https : / / zlib . net/$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m /n/10 https : / / en . wikipedia . org / wiki / Gzip$[][]\T1/ptm/m/n/10 , [][]$ \T1/zi4/m/n/10 http : / / www . bzip . org/$[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 24762--24768 [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm /m/n/10 , [][]$\T1/zi4/m/n/10 https : / / tukaani . org / xz/$[][] \T1/ptm/m/n/ 10 and [][]$\T1/zi4/m/n/10 https : [382] [383] [384] [385] [386] [387] [388] [389] Underfull \hbox (badness 2790) in paragraph at lines 25271--25274 []\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes -sages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 25271--25274 []\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti ll mes-sages, so can be sup-pressed by [390] [391] [392] [393] [394] Underfull \hbox (badness 1194) in paragraph at lines 25594--25597 []\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1 0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/ m/n/10 . It calls [395] [396] [397] Underfull \hbox (badness 2368) in paragraph at lines 25801--25807 []\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n /10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r e-spond-ing list, i.e., [398] [399] [400] [401] [402] [403] Underfull \hbox (badness 10000) in paragraph at lines 26191--26194 []\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by [404] [405] [406] [407] [408] [409] [410] [411] [412] [413] Underfull \hbox (badness 10000) in paragraph at lines 26817--26819 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in% [414] [415] [416] [417] [418] [419] [420] Underfull \hbox (badness 2443) in paragraph at lines 27305--27313 \T1/ptm/m/n/10 suit-able char-ac-ter vec-tors as above, or nu-meric ver-sion ob -jects. For [421] [422] [423] [424] [425] [426] Underfull \hbox (badness 1881) in paragraph at lines 27723--27726 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are [427] Underfull \hbox (badness 6220) in paragraph at lines 27748--27750 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [428] Underfull \hbox (badness 2142) in paragraph at lines 27889--27893 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able [429] Underfull \hbox (badness 1968) in paragraph at lines 27946--27951 []\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\ T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able [430] [431] [432] Underfull \hbox (badness 10000) in paragraph at lines 28240--28246 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/ m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 28240--28246 \T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[] \T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 28240--28246 \T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de "[]\T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 10000) in paragraph at lines 28253--28256 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[ ][][] []\T1/ptm/m/n/10 (and hence[][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/pt m/m/n/10 and [433] Underfull \hbox (badness 2689) in paragraph at lines 28279--28281 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see Underfull \hbox (badness 10000) in paragraph at lines 28321--28326 []\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/ m/n/10 (and in-di-rectly Underfull \hbox (badness 2529) in paragraph at lines 28327--28338 \T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm /m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si- Underfull \hbox (badness 2512) in paragraph at lines 28327--28338 \T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u se and Underfull \hbox (badness 7203) in paragraph at lines 28339--28342 []\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T 1/ptm/m/n/10 and [434] [435] [436] [437] [438] [439] Underfull \hbox (badness 10000) in paragraph at lines 28756--28760 \T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU N(X[arrayindex.x], Y[arrayindex.y], [440] [441] [442] Underfull \hbox (badness 10000) in paragraph at lines 28903--28906 []\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex t=s, [443] Underfull \hbox (badness 7925) in paragraph at lines 28984--28988 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [ ]\T1/ptm/m/n/10 cor-re-sponds to Underfull \hbox (badness 1253) in paragraph at lines 28984--28988 [][][]\T1/zi4/m/n/10 parse[][][](text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 , which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) and [][][]\T1/zi4/m/n/10 class[][][] Underfull \hbox (badness 2521) in paragraph at lines 28989--28998 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt m/m/n/10 cor-re-sponds to [][][]\T1/zi4/m/n/10 parse[][][](text = s, [444] [445] [446] [447] [448] [449] [450] [451] [452] [453] [454] [455] [456] [457] [458] [459] Underfull \hbox (badness 2726) in paragraph at lines 30001--30004 []\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed out-put, see [460] [461] [462] [463] [464] [465] [466] [467] [468] [469] [470] [471] [472] [473] [474] [475] [476] [477] [478] [479] [480] [481] [482] [483] [484] [485] [486] Underfull \hbox (badness 1533) in paragraph at lines 31798--31801 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [487] [488] [489] Underfull \hbox (badness 1163) in paragraph at lines 31961--31972 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [490] [491] [492] [493] [494] [495] [496] Underfull \vbox (badness 3803) has occurred while \output is active [497] [498] [499] [500] [501] [502] [503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514] [515] Underfull \hbox (badness 10000) in paragraph at lines 33627--33631 []\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 33627--33631 []\T1/zi4/m/n/10 "(?[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions of the matches are also re-turned by name. Underfull \hbox (badness 3557) in paragraph at lines 33648--33650 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919799 / Underfull \hbox (badness 1122) in paragraph at lines 33651--33655 []\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi 4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m /n/10 https : / / www . pcre . org / [516] [517] Underfull \vbox (badness 10000) has occurred while \output is active [518] [519] [520] [521] [522] [523] [524] [525] Underfull \hbox (badness 1655) in paragraph at lines 34252--34254 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1 /ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for [526] [527] [528] [529] [530] [531] [532] [533] [534] [535] [536] [537] [538] [539] [540] [541] [542] [543] [544] Underfull \hbox (badness 2261) in paragraph at lines 35458--35463 []\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 1, it ap-plies to all fields; oth-er-wise, if [545] [546] [547] [548] [549] [550] [551] [552] [553] [554] [555] [556] [557] [558] [559] [560] Underfull \hbox (badness 3668) in paragraph at lines 36493--36497 []\T1/zi4/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in- te-ger con-nec-tion de-scrip-tors for use with [561] Underfull \hbox (badness 10000) in paragraph at lines 36584--36595 \T1/zi4/m/n/10 / / learn . microsoft . com / en-[]us / cpp / c-[]language / par sing-[]c-[]command-[]line-[]arguments ? [562] [563] [564] [565] [566] [567] [568] [569] [570] [571] [572] [573] [574] [575] [576] [577] [578] [579] [580] [581] [582] [583] [584] [585] Underfull \hbox (badness 10000) in paragraph at lines 38129--38131 [][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919 799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for [586] Underfull \vbox (badness 3803) has occurred while \output is active [587] [588] [589] [590] [591] [592] Underfull \hbox (badness 2913) in paragraph at lines 38549--38553 \T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur- rently un-der eval-u-a-tion, ex-ceeds the limit set by [593] [594] [595] Underfull \hbox (badness 1072) in paragraph at lines 38795--38799 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 38800--38804 []\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/ m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi 4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ', [596] Underfull \hbox (badness 10000) in paragraph at lines 38840--38846 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 38840--38846 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 38840--38846 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in Underfull \hbox (badness 3009) in paragraph at lines 38855--38862 []\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt m/m/n/10 ' which is read Underfull \hbox (badness 1038) in paragraph at lines 38855--38862 \T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron- ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 38855--38862 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 38855--38862 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [597] [598] [599] Underfull \hbox (badness 2644) in paragraph at lines 39090--39094 []\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T 1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an [600] [601] [602] Underfull \hbox (badness 1142) in paragraph at lines 39258--39264 []\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the []\T1/zi4/m/n/10 fo rmat []\T1/ptm/m/n/10 meth-ods is []\T1/zi4/m/n/10 "%Y-%m-%d [603] [604] [605] [606] [607] [608] [609] [610] [611] [612] [613] [614] [615] [616] [617] [618] [619] [620] [621] [622] [623] Underfull \hbox (badness 1158) in paragraph at lines 40617--40619 []\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil e.type) []\T1/ptm/m/n/10 for the de-fault [624] [625] [626] [627] [628] [629] [630] [631] [632] [633] Underfull \hbox (badness 1137) in paragraph at lines 41212--41218 []\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild -cards in file paths. For pre-cise de-tails Underfull \hbox (badness 4967) in paragraph at lines 41231--41236 []\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10 this may need to be matched ex-plic-itly: for ex-am-ple [634] [635] Underfull \hbox (badness 1616) in paragraph at lines 41351--41356 []\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al ikes, pro-vided only the POSIX op-tions [636] [637] [638] [639] Underfull \vbox (badness 3803) has occurred while \output is active [640] [641] [642] [643] [644] Underfull \hbox (badness 1472) in paragraph at lines 41898--41901 []\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions keep their source in-clud-ing com-ments, see [645] [646] [647] [648] [649] [650] [651] [652] [653] [654] [655] [656] [657] Underfull \vbox (badness 3803) has occurred while \output is active [658] Underfull \hbox (badness 10000) in paragraph at lines 42824--42828 []\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/n/10 bin []\T1/ptm/m/n/10 can have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4/ m/n/10 length(bin) > [659] [660] [661] [662] Underfull \hbox (badness 10000) in paragraph at lines 43083--43086 [][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [ ][]$https : / / developer . r-[]project . org / [663] [664] [665] Underfull \hbox (badness 10000) in paragraph at lines 43267--43271 [][][]\T1/zi4/m/n/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/ 10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 taskCallback Manager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer . [666] [667] [668] [669] [670] [671] [672] [673] [674] [675] Underfull \hbox (badness 10000) in paragraph at lines 43916--43919 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / data . iana . org / time-[ ]zones / [676] [677] [678] [679] [680] Underfull \vbox (badness 3803) has occurred while \output is active [681] [682] [683] [684] [685] [686] [687] [688] Underfull \hbox (badness 1990) in paragraph at lines 44837--44845 []\T1/zi4/m/n/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any er-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 44837--44845 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ][]\T1/zi4/m/n/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less [689] [690] [691] [692] [693] [694] [695] [696] [697] [698] [699] [700] [701] [702] [703] [704] Underfull \hbox (badness 2452) in paragraph at lines 45834--45840 [][][]\T1/zi4/m/n/10 file[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.acc ess[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.append[][][][]\T1/ptm/m/n /10 , [][][]\T1/zi4/m/n/10 file.copy[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/ 10 file.create[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.exists[][][][] \T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [705] [706] [707] [708] [709] [710] Underfull \hbox (badness 3668) in paragraph at lines 46232--46234 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di- ately, even if [711] [712] Underfull \hbox (badness 2401) in paragraph at lines 46362--46366 []\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/n/10 options[][][]("w arn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [713] [714] Underfull \hbox (badness 3492) in paragraph at lines 46486--46488 []\T1/zi4/m/n/10 weekdays []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 months []\T1/pt m/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e., [715] Underfull \hbox (badness 2111) in paragraph at lines 46572--46577 \T1/ptm/m/n/10 If [][][]\T1/zi4/m/n/10 names[][][](.dimnames) []\T1/ptm/m/n/10 is not empty, these are used as col-umn names. [716] [717] [718] [719] Underfull \hbox (badness 4001) in paragraph at lines 46818--46820 []\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/n/10 https : / / developer . [720] [721] [722] [723] [724] [725] Underfull \hbox (badness 5417) in paragraph at lines 47185--47189 []\T1/zi4/m/n/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-ren tly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [726] Underfull \hbox (badness 10000) in paragraph at lines 47246--47250 []\T1/zi4/m/n/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-da rd' reg-exps, in-clud-ing el-e-ments named [727]) (./compiler-pkg.tex [728] Chapter 2. [729] [730] [731] [732]) (./datasets-pkg.tex Chapter 3. [733] [734] [735] [736] [737] [738] [739] [740] [741] [742] [743] [744] [745] [746] [747] [748] [749] Underfull \hbox (badness 1097) in paragraph at lines 1037--1041 []\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th e iden-ti-fi-ca-tion of crim-i-nals. [750] [751] [752] [753] [754] [755] [756] [757] [758] [759] [760] [761] [762] [763] [764] [765] [766] [767] [768] [769] [770] [771] [772] [773] [774] [775] [776] [777] [778] [779] [780] [781] [782] [783] [784] [785] [786] [787] [788] [789] [790] [791] Overfull \hbox (2.27475pt too wide) in paragraph at lines 3508--3508 []\T1/zi4/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis t.html#Geographic%20Centers[] [792] [793] [794] [795] [796] [797] [798] [799] [800] [801] [802] [803] [804] [805] [806] [807] [808] [809] [810] [811] [812] [813] [814] [815]) (./grDevices-pkg.tex [816] Chapter 4. [817] [818] [819] [820] [821] Underfull \hbox (badness 2221) in paragraph at lines 282--286 []\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/n/10 c(mi, ma, n.)[]\ T1/ptm/m/n/10 , with iden-ti-cal mean-ing to Underfull \hbox (badness 10000) in paragraph at lines 298--303 []\T1/ptm/m/n/10 Apart from that, [][][]\T1/zi4/m/n/10 axisTicks[][][]() []\T1/ ptm/m/n/10 just calls the C func-tion []\T1/zi4/m/n/10 CreateAtVector() []\T1/p tm/m/n/10 in Underfull \hbox (badness 1852) in paragraph at lines 298--303 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 /src/main/plot.c\T1/ptm/m/n/10 ' which is also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack-age func-t ion [822] [823] [824] [825] [826] [827] [828] [829] [830] [831] Underfull \hbox (badness 1424) in paragraph at lines 899--901 [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) an d []\T1/zi4/m/n/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also be spec-i-fied as [832] [833] [834] [835] Underfull \hbox (badness 5175) in paragraph at lines 1193--1195 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [836] [837] Underfull \hbox (badness 2512) in paragraph at lines 1312--1314 []\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/n/10 https : / / web . arc hive . org / web / 20190613001950 / http : / / efg2 . com / [838] [839] [840] [841] [842] Underfull \hbox (badness 1490) in paragraph at lines 1612--1617 \T1/ptm/m/n/10 by [][][]\T1/zi4/m/n/10 rasterImage[][][] []\T1/ptm/m/n/10 and [ ][][]\T1/zi4/m/n/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues []\T 1/zi4/m/n/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "yes" []\T1/ptm/m/n/10 and Underfull \hbox (badness 3302) in paragraph at lines 1625--1629 []\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo re of [843] [844] [845] [846] [847] [848] [849] Underfull \hbox (badness 1325) in paragraph at lines 2040--2050 []\T1/zi4/m/n/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "pngmono"[]\T1/ptm/ m/n/10 , []\T1/zi4/m/n/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "pngalph a"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/1 0 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "bmp32b"[]\T1/ptm/m/n/10 , [850] Underfull \hbox (badness 10000) in paragraph at lines 2152--2154 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [851] [852] [853] Underfull \hbox (badness 6758) in paragraph at lines 2338--2341 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [854] [855] [856] [857] [858] [859] [860] [861] [862] [863] [864] [865] Underfull \hbox (badness 10000) in paragraph at lines 3089--3090 [866] [867] [868] [869] [870] [871] [872] [873] [874] [875] [876] [877] Underfull \vbox (badness 3803) has occurred while \output is active [878] [879] [880] [881] Underfull \vbox (badness 10000) has occurred while \output is active [882] Underfull \hbox (badness 10000) in paragraph at lines 4165--4168 []\T1/ptm/m/n/10 For use with []\T1/zi4/m/n/10 onefile = FALSE []\T1/ptm/m/n/10 give a C in-te-ger for-mat such as [883] [884] [885] [886] [887] [888] [889] [890] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.symbol}) has been already used, duplicate ignored \relax l.4681 \aliasA{symbol}{plotmath}{symbol} [891] [892] [893] [894] [895] [896] Underfull \hbox (badness 1584) in paragraph at lines 5067--5069 []\T1/ptm/m/n/10 For type []\T1/zi4/m/n/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1/ zi4/m/n/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See Underfull \hbox (badness 1067) in paragraph at lines 5071--5078 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [897] [898] [899] [900] [901] Underfull \hbox (badness 1377) in paragraph at lines 5387--5392 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [902] Underfull \hbox (badness 1418) in paragraph at lines 5463--5470 \T1/ptm/m/n/10 it is one of []\T1/zi4/m/n/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\ T1/zi4/m/n/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Courier"[]\T1/ptm/m /n/10 , []\T1/zi4/m/n/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Helvet ica-Narrow"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 1755) in paragraph at lines 5481--5483 []\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East Asian lan-guages -- see [903] Underfull \hbox (badness 1377) in paragraph at lines 5592--5597 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [ ]\T1/zi4/m/n/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and [904] Underfull \hbox (badness 7344) in paragraph at lines 5661--5663 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [905] [906] [907] Underfull \hbox (badness 2035) in paragraph at lines 5799--5808 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5799--5808 \T1/ptm/m/n/10 vided: []\T1/zi4/m/n/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi4 /m/n/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Courier"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Helvetica-Na rrow"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5799--5808 []\T1/zi4/m/n/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Pal atino" []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 "Times"[]\T1/ptm/m/n/10 ; []\T1/zi 4/m/n/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "URWBookman"[]\T1/ptm/m /n/10 , [908] Underfull \hbox (badness 10000) in paragraph at lines 5867--5869 []\T1/zi4/m/n/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/z i4/m/n/10 https : / / ftp . gnu . org / pub / non-[]gnu / [909] [910] Underfull \hbox (badness 1546) in paragraph at lines 6012--6020 []\T1/ptm/m/n/10 arguments []\T1/zi4/m/n/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi4 /m/n/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 title[]\T1/ptm/m/n/10 , []\T1 /zi4/m/n/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 encoding[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 fg[]\T1/ptm/m/n/10 , [] \T1/zi4/m/n/10 width[]\T1/ptm/m/n/10 , [911] [912] [913] [914] [915] [916] [917] [918] [919] Underfull \hbox (badness 10000) in paragraph at lines 6551--6554 []\T1/zi4/m/n/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (r ed/green/blue) into HSV space [920] Underfull \vbox (badness 3803) has occurred while \output is active [921] [922] [923] Overfull \hbox (9.73488pt too wide) in paragraph at lines 6788--6788 []\T1/zi4/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro blem (without \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 continuous=TRUE\TS1/zi4/m/n/9 '\T1/ zi4/m/n/9 ):[] [924] [925] [926] [927] [928] [929] [930] [931] [932] Underfull \hbox (badness 1189) in paragraph at lines 7414--7416 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [933] [934] Underfull \hbox (badness 10000) in paragraph at lines 7519--7521 []\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for CJ K lan-guages and [935] [936] [937] [938] [939] Underfull \hbox (badness 3780) in paragraph at lines 7833--7839 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of []\T1/zi4/m/n /10 "AvantGarde"[]\T1/ptm/m/n/10 , [940] [941] [942] [943] [944]) (./graphics-pkg.tex Chapter 5. [945] [946] [947] [948] [949] [950] [951] [952] [953] [954] [955] Underfull \vbox (badness 3803) has occurred while \output is active [956] [957] [958] [959] [960] [961] Overfull \hbox (12.71341pt too wide) in paragraph at lines 1034--1034 [] \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = " # {passengers}", legend.text = TRUE)[] [962] [963] [964] [965] [966] [967] Underfull \hbox (badness 4634) in paragraph at lines 1408--1411 [][][]\T1/zi4/m/n/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready work s nowa-days with data.frames; [][][]\T1/zi4/m/n/10 boxplot.formula[][][][]\T1/p tm/m/n/10 , [968] [969] [970] [971] [972] [973] [974] [975] [976] [977] [978] [979] [980] [981] [982] [983] [984] Underfull \hbox (badness 1728) in paragraph at lines 2388--2390 []\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/n/10 "n" []\T1/ptm/m/n/10 to sup-press and see also [985] Underfull \hbox (badness 1009) in paragraph at lines 2481--2488 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [986] [987] [988] [989] [990] [991] [992] [993] [994] [995] [996] [997] [998] [999] [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] Underfull \vbox (badness 10000) has occurred while \output is active [1009] Underfull \vbox (badness 10000) has occurred while \output is active [1010] [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020] [1021] Underfull \hbox (badness 3229) in paragraph at lines 4715--4720 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used, see [1022] [1023] [1024] [1025] [1026] Underfull \hbox (badness 1107) in paragraph at lines 5144--5150 []\T1/ptm/m/n/10 is []\T1/zi4/m/n/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sca led to user co-or-di-nates. Note that []\T1/zi4/m/n/10 c([][]strwidth[][][](ch) , [1027] [1028] Underfull \hbox (badness 10000) in paragraph at lines 5273--5276 [1029 >/library/graphics/help/figures//mai.pdf >] Underfull \hbox (badness 10000) in paragraph at lines 5334--5336 Underfull \vbox (badness 10000) has occurred while \output is active [1030] [1031 >/library/graphics/help/figures//oma.pdf >] [1032] [1033] Underfull \vbox (badness 3803) has occurred while \output is active [1034] [1035] [1036] [1037] [1038] [1039] [1040] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.plot}) ha s been already used, duplicate ignored \relax l.6005 \aliasA{plot}{plot.default}{plot} [1041] [1042] [1043] [1044] [1045] [1046] [1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6909--6910 [][] [1055 >/library/graphics/help/figures//pch.pdf >] [1056] Underfull \vbox (badness 3803) has occurred while \output is active [1057] [1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] [1066] [1067] [1068] [1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] [1078] [1079] [1080] [1081] [1082] [1083] [1084] [1085] [1086] [1087] [1088] [1089] Underfull \hbox (badness 4954) in paragraph at lines 9001--9003 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m /n/10 par(c("font.sub", Underfull \hbox (badness 1019) in paragraph at lines 9003--9005 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/n/10 par (c("font.lab", "cex.lab", [1090] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units}) h as been already used, duplicate ignored \relax l.9083 \HeaderA{units}{Graphical Units}{units} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units.1}) has been already used, duplicate ignored \relax l.9083 \HeaderA{units}{Graphical Units}{units} [1091] [1092] [1093] [1094]) (./grid-pkg.tex Chapter 6. [1095] [1096] [1097] [1098] [1099] [1100] [1101] [1102] [1103] Underfull \hbox (badness 2680) in paragraph at lines 550--553 []\T1/ptm/m/n/10 Note that []\T1/zi4/m/n/10 preDrawDetails []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal-c u-la-tion of [1104] [1105] [1106] [1107] [1108] [1109] [1110] [1111] [1112] [1113] [1114] Underfull \hbox (badness 4279) in paragraph at lines 1187--1196 [][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/n/10 pushViewport[][][][]\T1/p tm/m/n/10 , [][][]\T1/zi4/m/n/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/ zi4/m/n/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 seekViewpo rt[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 upViewport[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/zi4/m/n/10 unit[][][][]\T1/ptm/m/n/10 , [1115] [1116] [1117] [1118] [1119] [1120] [1121] [1122] [1123] [1124] [1125] [1126] [1127] [1128] [1129] [1130] [1131] [1132] [1133] [1134] [1135] [1136] [1137] [1138] [1139] [1140] [1141] [1142] [1143] [1144] [1145] [1146] Underfull \hbox (badness 10000) in paragraph at lines 3102--3104 []\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix; see [1147] [1148] [1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] [1157] [1158] [1159] [1160] [1161] [1162] Underfull \vbox (badness 10000) has occurred while \output is active [1163] [1164] [1165] [1166] [1167] [1168] [1169] [1170] [1171] [1172] [1173] [1174] [1175] [1176] Underfull \hbox (badness 1067) in paragraph at lines 4840--4843 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1177] [1178] [1179] [1180] [1181] [1182] Underfull \hbox (badness 7256) in paragraph at lines 5191--5193 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1183] [1184] [1185] [1186] [1187] [1188] [1189] Underfull \hbox (badness 2142) in paragraph at lines 5645--5649 []\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/n/10 gridGTreeCoords []\T1/ptm/m/n/1 0 a list of ei-ther []\T1/zi4/m/n/10 "GridGrobCoords" []\T1/ptm/m/n/10 or [1190] [1191] Underfull \hbox (badness 4699) in paragraph at lines 5727--5732 []\T1/ptm/m/n/10 Either a []\T1/zi4/m/n/10 "GridGrobCoords" []\T1/ptm/m/n/10 ob -ject (a list of lists with com-po-nents []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 an d []\T1/zi4/m/n/10 y[]\T1/ptm/m/n/10 ) or a [1192] [1193] [1194] [1195] [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203] [1204] [1205] [1206] [1207] [1208] [1209] [1210] [1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218] [1219] [1220] [1221] [1222] [1223]) (./methods-pkg.tex [1224] Chapter 7. [1225] [1226] [1227] [1228] [1229] [1230] [1231] [1232] Underfull \vbox (badness 10000) has occurred while \output is active [1233] Underfull \vbox (badness 10000) has occurred while \output is active [1234] [1235] [1236] [1237] [1238] [1239] [1240] [1241] [1242] [1243] Underfull \hbox (badness 2237) in paragraph at lines 1385--1387 []\T1/ptm/m/n/10 The class []\T1/zi4/m/n/10 "className" []\T1/ptm/m/n/10 ex-ten ds []\T1/zi4/m/n/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/n/1 0 "package"[]\T1/ptm/m/n/10 , also of class [1244] [1245] [1246] [1247] [1248] [1249] [1250] [1251] [1252] Underfull \hbox (badness 10000) in paragraph at lines 1981--1986 []\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/n/10 insertSource []\T1/ptm/m/n/ 10 can be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1981--1986 \T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/n/10 insertSource []\T1/ptm/m /n/10 it calls []\T1/zi4/m/n/10 evalSource []\T1/ptm/m/n/10 to ob-tain the [1253] [1254] [1255] Underfull \hbox (badness 2213) in paragraph at lines 2213--2218 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use []\T1/zi4/m/n/10 where = [1256] [1257] [1258] [1259] [1260] Underfull \hbox (badness 10000) in paragraph at lines 2573--2576 []\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/n/10 setGeneric[][][] []\ T1/ptm/m/n/10 and [][][]\T1/zi4/m/n/10 setGroupGeneric[][][] []\T1/ptm/m/n/10 c re-ate ob-jects of class [1261] [1262] Underfull \hbox (badness 1132) in paragraph at lines 2713--2717 []\T1/ptm/m/n/10 In []\T1/zi4/m/n/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi4 /m/n/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/n/10 package []\T1/ptm/m/n/10 sl ot of the re-turned re-sult is in [1263] Underfull \hbox (badness 1033) in paragraph at lines 2745--2750 \T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/n/10 removeGeneric []\T1/ptm/m/n/10 r e-moves the func-tion it-self; []\T1/zi4/m/n/10 removeMethods []\T1/ptm/m/n/10 re-stores the [1264] [1265] [1266] [1267] [1268] [1269] [1270] Underfull \hbox (badness 1102) in paragraph at lines 3302--3304 []\T1/zi4/m/n/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string name of the pack-age (with-out the ex-tra-ne-ous [1271] [1272] [1273] [1274] [1275] [1276] Underfull \hbox (badness 10000) in paragraph at lines 3641--3650 []\T1/ptm/m/n/10 The [1277] Underfull \hbox (badness 10000) in paragraph at lines 3761--3762 [] \T1/zi4/m/n/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longit ude = "numeric", [1278] Underfull \hbox (badness 10000) in paragraph at lines 3845--3846 []\T1/zi4/m/n/10 Currency <- setClass("Currency", slots = c(unit = "character") , contains = [1279] [1280] [1281] [1282] [1283] [1284] [1285] [1286] [1287] [1288] Underfull \hbox (badness 1769) in paragraph at lines 4476--4482 []\T1/ptm/m/n/10 class [][][]\T1/zi4/m/n/10 MethodsList[][][] []\T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4476--4482 []\T1/zi4/m/n/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class [] [][]\T1/zi4/m/n/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion use d by [1289] [1290] [1291] [1292] [1293] [1294] [1295] [1296] [1297] [1298] Underfull \vbox (badness 10000) has occurred while \output is active [1299] [1300] [1301] Underfull \hbox (badness 4036) in paragraph at lines 5445--5448 []\T1/ptm/m/n/10 Object of class []\T1/zi4/m/n/10 "PossibleMethod" []\T1/ptm/m/ n/10 the method to use in re-sponse to a [1302] [1303] Underfull \hbox (badness 3803) in paragraph at lines 5520--5522 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1304] [1305] [1306] Underfull \hbox (badness 1087) in paragraph at lines 5752--5757 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1307] [1308] [1309] [1310] [1311] [1312] [1313] [1314] [1315] Underfull \hbox (badness 1675) in paragraph at lines 6459--6465 []\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/n/10 externalRef Method(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1316] [1317] [1318] [1319] Underfull \vbox (badness 10000) has occurred while \output is active [1320] [1321] [1322] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has been already used, duplicate ignored \relax l.6981 \aliasA{S4}{S3Part}{S4} [1323] [1324] [1325] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Complex}) has been already used, duplicate ignored \relax l.7237 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Logic}) h as been already used, duplicate ignored \relax l.7239 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) ha s been already used, duplicate ignored \relax l.7240 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7242 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignored \relax l.7243 \aliasA{Summary}{S4groupGeneric}{Summary} [1326] Underfull \hbox (badness 2050) in paragraph at lines 7304--7308 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1327] [1328] [1329] Underfull \hbox (badness 1286) in paragraph at lines 7492--7494 []\T1/ptm/m/n/10 for []\T1/zi4/m/n/10 .selectSuperClasses() []\T1/ptm/m/n/10 on ly, a [][][]\T1/zi4/m/n/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions, t yp-i-cally [1330] [1331] [1332] [1333] [1334] [1335] [1336] [1337] [1338] [1339] [1340] [1341] [1342] [1343] [1344] [1345] [1346] [1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355] [1356] Underfull \vbox (badness 10000) has occurred while \output is active [1357] [1358] [1359] [1360] [1361] [1362] [1363] [1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] Underfull \hbox (badness 1852) in paragraph at lines 10572--10576 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1372] [1373] [1374] [1375]) (./parallel-pkg.tex [1376] Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z i4/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' [][] RNG[][][]: see [1377] [1378] [1379] [1380] [1381] Underfull \hbox (badness 1320) in paragraph at lines 301--304 []\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, So-laris and Win-dows. [1382] [1383] [1384] [1385] [1386] [1387] [1388] [1389] [1390] [1391] [1392] [1393] [1394] [1395] [1396] [1397] [1398] Underfull \hbox (badness 3386) in paragraph at lines 1394--1397 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/n/10 .Random.seed []\T1/ptm/m/n/10 when the [1399] [1400]) (./splines-pkg.tex Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1401] [1402] [1403] [1404] [1405] [1406] [1407] [1408] [1409] [1410] [1411] [1412] [1413] [1414] [1415] [1416]) (./stats-pkg.tex Chapter 10. [1417] [1418] [1419] [1420] [1421] [1422] [1423] [1424] [1425] [1426] [1427] [1428] [1429] [1430] Underfull \hbox (badness 1412) in paragraph at lines 901--903 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/n/10 l m []\T1/ptm/m/n/10 or []\T1/zi4/m/n/10 aov[]\T1/ptm/m/n/10 , or a for-mula for [1431] [1432] [1433] [1434] [1435] [1436] [1437] [1438] Underfull \hbox (badness 2503) in paragraph at lines 1383--1386 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 , [1439] [1440] [1441] [1442] [1443] [1444] [1445] [1446] [1447] [1448] [1449] [1450] [1451] [1452] [1453] [1454] [1455] [1456] [1457] [1458] [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] Underfull \hbox (badness 2503) in paragraph at lines 3546--3549 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 , [1473] [1474] Package amsmath Warning: Foreign command \atopwithdelims; (amsmath) \frac or \genfrac should be used instead (amsmath) on input line 3658. [1475] [1476] [1477] [1478] [1479] [1480] [1481] [1482] [1483] [1484] [1485] [1486] [1487] [1488] [1489] [1490] [1491] [1492] Underfull \hbox (badness 3989) in paragraph at lines 4803--4810 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1493] [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] Underfull \hbox (badness 2556) in paragraph at lines 5444--5447 []\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/n/10 "circular"[] \T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "fi lter"[]\T1/ptm/m/n/10 . For [1503] [1504] [1505] [1506] [1507] [1508] [1509] Underfull \hbox (badness 2503) in paragraph at lines 5858--5862 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 , [1510] [1511] [1512] [1513] [1514] [1515] [1516] [1517] [1518] [1519] [1520] [1521] [1522] Underfull \hbox (badness 7081) in paragraph at lines 6652--6655 []\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/n/10 "hclust" []\T1/ptm/m/n/10 ca n be con-verted to class []\T1/zi4/m/n/10 "dendrogram" []\T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 10000) in paragraph at lines 6656--6658 []\T1/zi4/m/n/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-g ram []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also [1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530] [1531] [1532] [1533] [1534] [1535] [1536] Underfull \hbox (badness 10000) in paragraph at lines 7531--7534 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][] \T1/zi4/m/n/10 dist[][][]()[]\T1/ptm/m/n/10 , the [1537] [1538] [1539] [1540] [1541] [1542] [1543] [1544] [1545] [1546] [1547] [1548] [1549] [1550] [1551] [1552] [1553] [1554] [1555] [1556] [1557] [1558] [1559] [1560] [1561] [1562] [1563] Underfull \hbox (badness 2626) in paragraph at lines 9226--9229 []\T1/ptm/m/n/10 Either []\T1/zi4/m/n/10 "convolution" []\T1/ptm/m/n/10 or []\T 1/zi4/m/n/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1564] Underfull \hbox (badness 2503) in paragraph at lines 9333--9337 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 , [1565] [1566] [1567] [1568] [1569] [1570] [1571] [1572] [1573] [1574] [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] Underfull \hbox (badness 4518) in paragraph at lines 10685--10690 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1586] [1587] [1588] [1589] [1590] Underfull \hbox (badness 2142) in paragraph at lines 11046--11049 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ [1591] Underfull \hbox (badness 1253) in paragraph at lines 11065--11068 []\T1/ptm/m/n/10 When []\T1/zi4/m/n/10 trace []\T1/ptm/m/n/10 is true, calls to [][][]\T1/zi4/m/n/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for each IWLS it-er-a-tion. Hence, [1592] Underfull \hbox (badness 1708) in paragraph at lines 11127--11131 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1593] [1594] [1595] [1596] [1597] [1598] Underfull \hbox (badness 1694) in paragraph at lines 11523--11526 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1599] [1600] [1601] [1602] [1603] [1604] [1605] [1606] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.hat}) has been already used, duplicate ignored \relax l.12004 \aliasA{hat}{influence.measures}{hat} [1607] [1608] Underfull \hbox (badness 1484) in paragraph at lines 12146--12148 []\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/n/10 hat() []\T1/ptm/m/n/10 ex-ists mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1609] [1610] [1611] [1612] [1613] [1614] [1615] [1616] [1617] [1618] Underfull \hbox (badness 10000) in paragraph at lines 12749--12751 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/n/10 solve.de fault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/n/10 SSinit = [1619] [1620] [1621] [1622] [1623] [1624] Underfull \hbox (badness 2894) in paragraph at lines 13085--13089 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1625] [1626] [1627] [1628] [1629] [1630] Underfull \hbox (badness 1496) in paragraph at lines 13508--13514 []\T1/ptm/m/n/10 Gunar Schröer and Di-et-rich Tren-kler (1995). Ex-act and Ran- dom-iza-tion Dis-tri-bu-tions of [1631] [1632] [1633] [1634] [1635] [1636] Underfull \hbox (badness 4518) in paragraph at lines 13906--13911 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1637] [1638] [1639] [1640] [1641] [1642] [1643] [1644] [1645] [1646] Underfull \hbox (badness 4518) in paragraph at lines 14566--14571 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1647] [1648] [1649] Underfull \hbox (badness 6412) in paragraph at lines 14704--14708 []\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/n/10 (surface = "inte rpolate", statistics = Underfull \hbox (badness 1199) in paragraph at lines 14711--14713 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if []\T1/zi4/m/n/10 family []\T1/ptm/m/n/10 is [1650] [1651] [1652] [1653] [1654] [1655] [1656] [1657] [1658] [1659] [1660] [1661] [1662] [1663] [1664] [1665] [1666] [1667] Underfull \hbox (badness 2503) in paragraph at lines 15787--15791 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 , [1668] [1669] [1670] [1671] [1672] [1673] [1674] [1675] Underfull \hbox (badness 10000) in paragraph at lines 16299--16305 []\T1/zi4/m/n/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/n/ 10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to Underfull \hbox (badness 1867) in paragraph at lines 16299--16305 []\T1/zi4/m/n/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 model.re sponse(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/n/10 model.offset []\T1/ ptm/m/n/10 sums any terms [1676] [1677] [1678] [1679] [1680] [1681] [1682] [1683] [1684] [1685] [1686] [1687] [1688] [1689] [1690] [1691] [1692] [1693] [1694] [1695] [1696] [1697] [1698] [1699] [1700] [1701] Underfull \hbox (badness 1158) in paragraph at lines 17954--17957 []\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/n/10 nls []\T1 /ptm/m/n/10 as the data ar-gu-ment. The ac- [1702] [1703] Underfull \vbox (badness 3803) has occurred while \output is active [1704] Underfull \vbox (badness 10000) has occurred while \output is active [1705] Underfull \vbox (badness 10000) has occurred while \output is active [1706] [1707] [1708] [1709] [1710] [1711] [1712] [1713] [1714] [1715] [1716] [1717] [1718] [1719] Underfull \hbox (badness 1377) in paragraph at lines 18988--18993 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 18993--18996 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 2343) in paragraph at lines 19006--19010 []\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i t is un-able to re-duce Underfull \hbox (badness 3471) in paragraph at lines 19006--19010 \T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/n/10 reltol * (abs(val) + reltol) []\T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 19014--19018 []\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/n/10 "BFGS"[]\T 1/ptm/m/n/10 , []\T1/zi4/m/n/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/n/1 0 "SANN" []\T1/ptm/m/n/10 meth-ods if [1720] [1721] [1722] Underfull \vbox (badness 10000) has occurred while \output is active [1723] Overfull \hbox (15.73795pt too wide) in paragraph at lines 19239--19239 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Overfull \hbox (3.75941pt too wide) in paragraph at lines 19242--19242 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1724] [1725] [1726] [1727] [1728] [1729] [1730] Underfull \hbox (badness 1337) in paragraph at lines 19701--19704 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1731] [1732] [1733] [1734] [1735] [1736] [1737] [1738] [1739] Underfull \hbox (badness 10000) in paragraph at lines 20172--20178 \T1/zi4/m/n/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 s distance", lty = cook.lty, col = cook.col, text.col [1740] [1741] [1742] [1743] [1744] Underfull \hbox (badness 1194) in paragraph at lines 20510--20513 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1745] [1746] [1747] [1748] [1749] [1750] [1751] Underfull \hbox (badness 2503) in paragraph at lines 20889--20892 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3919) in paragraph at lines 20916--20918 []\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/n/10 "Exact Poisson test" [ ]\T1/ptm/m/n/10 or []\T1/zi4/m/n/10 "Comparison of Poisson [1752] [1753] [1754] [1755] [1756] [1757] [1758] [1759] [1760] [1761] [1762] [1763] [1764] [1765] [1766] [1767] [1768] [1769] Underfull \hbox (badness 10000) in paragraph at lines 21995--22001 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/n/10 predict.ar[ ][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 predict.Arima[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/zi4/m/n/10 predict.arima0[][][][]\T1/ptm/m/n/10 , [1770] [1771] [1772] [1773] [1774] [1775] [1776] [1777] [1778] [1779] [1780] [1781] [1782] [1783] [1784] [1785] [1786] [1787] [1788] [1789] [1790] [1791] [1792] [1793] Underfull \hbox (badness 1337) in paragraph at lines 23393--23399 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1794] [1795] [1796] [1797] [1798] [1799] [1800] [1801] Underfull \hbox (badness 1436) in paragraph at lines 23883--23886 \T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t o 4.0.x, this had been set to []\T1/zi4/m/n/10 max(2, [1802] Underfull \hbox (badness 10000) in paragraph at lines 24024--24025 []\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . or g / wiki / Quantile # Estimating _ quantiles _ from _ a _ [1803] [1804] [1805] [1806] [1807] [1808] [1809] [1810] [1811] [1812] [1813] [1814] [1815] [1816] [1817] [1818] Underfull \hbox (badness 1824) in paragraph at lines 24996--25002 []\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 are f irst re-placed by al-ter- Underfull \hbox (badness 1033) in paragraph at lines 24996--25002 \T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/ m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where [1819] Underfull \hbox (badness 10000) in paragraph at lines 25017--25020 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/n/10 y = r unmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/n/10 y[j] = [1820] Underfull \vbox (badness 3803) has occurred while \output is active [1821] [1822] [1823] [1824] [1825] [1826] [1827] [1828] Underfull \hbox (badness 2165) in paragraph at lines 25599--25604 []\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/n/10 "selfStart" []\T1 /ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/n/10 SSasymp[][][][]\T1/p tm/m/n/10 , [][][]\T1/zi4/m/n/10 SSasympOff[][][][]\T1/ptm/m/n/10 , [1829] [1830] [1831] [1832] Underfull \hbox (badness 1867) in paragraph at lines 25809--25811 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 25825--25829 []\T1/ptm/m/n/10 where []\T1/zi4/m/n/10 NN <- [][]nobs[][][](object, use.fallba ck = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 PP <- [1833] [1834] [1835] [1836] [1837] [1838] [1839] [1840] [1841] [1842] [1843] [1844] [1845] [1846] [1847] [1848] [1849] [1850] [1851] [1852] [1853] [1854] [1855] [1856] [1857] Underfull \vbox (badness 10000) has occurred while \output is active [1858] [1859] Underfull \hbox (badness 3514) in paragraph at lines 27486--27491 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1860] [1861] [1862] [1863] Overfull \hbox (2.23795pt too wide) in paragraph at lines 27720--27720 [] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] Underfull \hbox (badness 3514) in paragraph at lines 27756--27762 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1864] Overfull \hbox (20.23795pt too wide) in paragraph at lines 27813--27813 []\T1/zi4/m/n/9 fmX1 <- nls(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), data = d atN, control = list(scaleOffset=1))[] Overfull \hbox (11.22874pt too wide) in paragraph at lines 27815--27815 [] \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=1 e-11, nDcentral=TRUE), trace=TRUE)[] [1865] [1866] [1867] Underfull \hbox (badness 3514) in paragraph at lines 27989--27994 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1868] [1869] Underfull \hbox (badness 3514) in paragraph at lines 28076--28081 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1870] Underfull \hbox (badness 3514) in paragraph at lines 28141--28146 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1871] [1872] Underfull \hbox (badness 3514) in paragraph at lines 28235--28240 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1873] [1874] Underfull \hbox (badness 6691) in paragraph at lines 28327--28332 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 x[]\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1875] [1876] [1877] [1878] [1879] [1880] [1881] [1882] Underfull \hbox (badness 4024) in paragraph at lines 28818--28821 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion , which [1883] [1884] [1885] [1886] [1887] [1888] [1889] [1890] [1891] [1892] Underfull \hbox (badness 5431) in paragraph at lines 29427--29429 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1893] [1894] [1895] Underfull \hbox (badness 5431) in paragraph at lines 29637--29640 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1896] [1897] [1898] [1899] [1900] [1901] Underfull \hbox (badness 1337) in paragraph at lines 29952--29956 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1902] [1903] [1904] [1905] [1906] Underfull \hbox (badness 1616) in paragraph at lines 30288--30291 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1907] [1908] [1909] [1910] [1911] [1912] [1913] [1914] [1915] [1916] [1917] [1918] [1919] [1920] [1921] [1922] [1923] [1924] [1925] [1926] Underfull \hbox (badness 3557) in paragraph at lines 31512--31516 []\T1/ptm/m/n/10 Setting []\T1/zi4/m/n/10 extendInt []\T1/ptm/m/n/10 to a non-[ ]\T1/zi4/m/n/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-rect []\T1/zi4/m/n/10 interval = [1927] [1928] [1929] Underfull \vbox (badness 10000) has occurred while \output is active [1930] [1931] [1932] Underfull \hbox (badness 1337) in paragraph at lines 31879--31883 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1933] [1934] [1935] [1936] [1937] [1938] [1939] [1940] [1941] Underfull \hbox (badness 1337) in paragraph at lines 32408--32412 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1942] [1943] [1944] Overfull \hbox (0.71648pt too wide) in paragraph at lines 32616--32616 []\T1/zi4/m/n/9 wilcox.test( 4:2, 3:1, paired=TRUE) # Warning: canno t compute exact p-value with ties[] [1945] [1946] [1947] Overfull \hbox (19.71954pt too wide) in paragraph at lines 32777--32777 [] \T1/zi4/m/n/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.eps = getOption("ts.eps"), ...)[] [1948] [1949] [1950] [1951] [1952]) (./stats4-pkg.tex Chapter 11. [1953] [1954] [1955] Underfull \vbox (badness 10000) has occurred while \output is active [1956] Underfull \vbox (badness 10000) has occurred while \output is active [1957] [1958] [1959] [1960] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.show.Rdas h.methods}) has been already used, duplicate ignored \relax l.503 ...Package \pkg{stats4}}{show.Rdash.methods} [1961] [1962] [1963]) (./tcltk-pkg.tex [1964] Chapter 12. [1965] [1966] [1967] [1968] [1969] [1970] [1971] Underfull \vbox (badness 10000) has occurred while \output is active [1972] Underfull \vbox (badness 10000) has occurred while \output is active [1973] Underfull \hbox (badness 1546) in paragraph at lines 671--678 []\T1/zi4/m/n/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-i ng any Tk or Tcl com-mand by sim-ply run-ning [1974] [1975] [1976] [1977] [1978] Underfull \vbox (badness 10000) has occurred while \output is active [1979] [1980] [1981] [1982] [1983] [1984] [1985] [1986]) (./tools-pkg.tex Chapter 13. [1987] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1988] Underfull \hbox (badness 3039) in paragraph at lines 167--170 []\T1/zi4/m/n/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing will be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1989] [1990] Underfull \hbox (badness 1308) in paragraph at lines 288--301 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 288--301 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/n/10 bi bentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 288--301 []\T1/zi4/m/n/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatIn Proceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatManual[]\T1/ptm/m/n/10 , [ ]\T1/zi4/m/n/10 formatMastersthesis[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 288--301 []\T1/zi4/m/n/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatPhdthesis[ ]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1/zi 4/m/n/10 formatTechreport []\T1/ptm/m/n/10 and [1991] [1992] Underfull \hbox (badness 3039) in paragraph at lines 392--394 []\T1/zi4/m/n/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gin e to use. Over-rides any [1993] Underfull \hbox (badness 1142) in paragraph at lines 464--468 \T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s ub-di-rec-tory [1994] [1995] [1996] [1997] [1998] [1999] [2000] [2001] [2002] [2003] [2004] [2005] [2006] Underfull \hbox (badness 1014) in paragraph at lines 1188--1190 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1194--1196 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous [2007] Underfull \hbox (badness 10000) in paragraph at lines 1231--1234 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1231--1234 []\T1/zi4/m/n/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and [ ]\T1/zi4/m/n/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 , [2008] [2009] [2010] [2011] [2012] Underfull \hbox (badness 10000) in paragraph at lines 1606--1609 []\T1/ptm/m/n/10 Internal func-tions []\T1/zi4/m/n/10 CRAN_aliases_db[]\T1/ptm/ m/n/10 , []\T1/zi4/m/n/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CR AN_current_db []\T1/ptm/m/n/10 and [2013] [2014] Underfull \hbox (badness 4096) in paragraph at lines 1725--1733 \T1/zi4/m/n/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string Underfull \hbox (badness 1082) in paragraph at lines 1735--1737 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or []\T1/zi4/m/n/10 NULL []\T1/ptm/m/n/10 for all known trees (see [2015] [2016] [2017] [2018] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.GSC}) has been already used, duplicate ignored \relax l.1937 \aliasA{GSC}{find\_gs\_cmd}{GSC} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSC MD}) has been already used, duplicate ignored \relax l.1938 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [2019] [2020] [2021] [2022] [2023] [2024] [2025] Underfull \hbox (badness 3386) in paragraph at lines 2412--2415 []\T1/ptm/m/n/10 The de-fault method of []\T1/zi4/m/n/10 as.Rconcordance []\T1/ ptm/m/n/10 searches for strings match-ing the pat-tern of [2026] [2027] Underfull \hbox (badness 4096) in paragraph at lines 2552--2560 \T1/zi4/m/n/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string [2028] [2029] [2030] [2031] [2032] [2033] [2034] [2035] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 3046. LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 3047. LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 3047. [2036] [2037] [2038] [2039] [2040] Underfull \hbox (badness 1424) in paragraph at lines 3358--3360 []\T1/zi4/m/it/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec -tor of links, as re-turned by [2041] [2042] [2043] [2044] [2045] [2046] [2047] [2048] [2049] [2050] [2051] Underfull \hbox (badness 10000) in paragraph at lines 4080--4082 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [2052] [2053] Underfull \hbox (badness 10000) in paragraph at lines 4219--4222 []\T1/ptm/m/n/10 Where sup-ported ([]\T1/zi4/m/it/10 texi2dvi []\T1/ptm/m/n/10 5.0 and later; []\T1/zi4/m/it/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op- tion [2054] [2055] [2056] [2057] [2058] [2059] Underfull \hbox (badness 1796) in paragraph at lines 4577--4582 []\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over [] \T1/zi4/m/it/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/it/10 type = = Underfull \hbox (badness 4699) in paragraph at lines 4627--4631 []\T1/ptm/m/n/10 a string, by de-fault empty, of op-tions to []\T1/zi4/m/it/10 msgmerge []\T1/ptm/m/n/10 in ad-di-tion to Underfull \hbox (badness 1946) in paragraph at lines 4627--4631 []\T1/zi4/m/it/10 "--update"[]\T1/ptm/m/n/10 . Since \T1/phv/m/n/10 R \T1/ptm/m /n/10 4.2.0, []\T1/zi4/m/it/10 "--no-wrap" []\T1/ptm/m/n/10 is used when called from [2060] Underfull \hbox (badness 1838) in paragraph at lines 4655--4661 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/it/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4655--4661 \T1/ptm/m/n/10 `\T1/zi4/m/it/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [2061] [2062] [2063] [2064] Underfull \hbox (badness 2197) in paragraph at lines 4936--4946 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z i4/m/it/10 available.packages[][][][]\T1/ptm/m/n/10 : [2065] Underfull \hbox (badness 1571) in paragraph at lines 5002--5006 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [2066] [2067] [2068] [2069]) (./utils-pkg.tex [2070] Chapter 14. [2071] Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/zi4/m/it/10 insertions[]\T1/ptm/m/n/10 ', [2072] [2073] [2074] [2075] [2076] [2077] [2078] [2079] [2080] [2081] Underfull \hbox (badness 10000) in paragraph at lines 729--735 []\T1/ptm/m/n/10 Functions []\T1/zi4/m/it/10 aspell_package_Rd_files[]\T1/ptm/m /n/10 , []\T1/zi4/m/it/10 aspell_package_vignettes[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 729--735 []\T1/zi4/m/it/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the [2082] [2083] [2084] Underfull \hbox (badness 3861) in paragraph at lines 934--939 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/it/10 "OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 "License"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/it/10 "License_is_FOSS"[]\T1/ptm/m/n/10 , [2085] [2086] [2087] Underfull \hbox (badness 10000) in paragraph at lines 1136--1138 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [2088] [2089] [2090] Underfull \vbox (badness 10000) has occurred while \output is active [2091] [2092] [2093] [2094] [2095] Underfull \hbox (badness 1371) in paragraph at lines 1664--1666 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to [2096] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 1734. [2097] [2098] [2099] [2100] [2101] [2102] [2103] [2104] [2105] [2106] [2107] Underfull \hbox (badness 2057) in paragraph at lines 2384--2386 []\T1/ptm/m/n/10 None for []\T1/zi4/m/it/10 chooseCRANmirror()[]\T1/ptm/m/n/10 , this func-tion is in-voked for its side ef-fect of up-dat-ing [2108] Underfull \hbox (badness 2150) in paragraph at lines 2459--2466 []\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/zi4/m/it/10 citation() []\T1 /ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print Underfull \hbox (badness 1400) in paragraph at lines 2459--2466 \T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I f a pack-age has more [2109] [2110] [2111] Underfull \vbox (badness 3803) has occurred while \output is active [2112] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.clipboard }) has been already used, duplicate ignored \relax l.2736 ... the Clipboard in MS Windows}{clipboard} [2113] [2114] [2115] [2116] [2117] [2118] [2119] [2120] [2121] [2122] [2123] [2124] [2125] [2126] [2127] [2128] [2129] [2130] [2131] [2132] [2133] Underfull \hbox (badness 6842) in paragraph at lines 4046--4051 []\T1/ptm/m/n/10 Support for method []\T1/zi4/m/it/10 "libcurl" []\T1/ptm/m/n/1 0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use [2134] Underfull \hbox (badness 1430) in paragraph at lines 4109--4113 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the []\T1/zi4/m/it/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the [2135] Underfull \hbox (badness 1184) in paragraph at lines 4180--4196 []\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/it/10 method = "libcurl"[]\T1/ptm /m/n/10 , the CA root cer-tifi-cates are pro-vided by the OS Underfull \hbox (badness 1019) in paragraph at lines 4180--4196 \T1/ptm/m/n/10 con-tain-ing `[]\T1/zi4/m/it/10 "Schannel"[]\T1/ptm/m/n/10 '. If it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-ment vari- Underfull \hbox (badness 1668) in paragraph at lines 4180--4196 \T1/ptm/m/n/10 able []\T1/zi4/m/it/10 CURL_CA_BUNDLE []\T1/ptm/m/n/10 must be s et to a path to a cer-tifi-cate bun-dle file, usu-ally named [2136] [2137] Underfull \hbox (badness 10000) in paragraph at lines 4330--4332 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/it/10 d ownload.file[][][] []\T1/ptm/m/n/10 and [2138] [2139] [2140] [2141] [2142] [2143] [2144] [2145] [2146] [2147] [2148] [2149] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.5101 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format.1} ) has been already used, duplicate ignored \relax l.5101 ...mat Unordered and Ordered Lists}{format} [2150] [2151] [2152] [2153] [2154] [2155] [2156] [2157] Underfull \hbox (badness 1622) in paragraph at lines 5624--5628 []\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing to ex-ter-nal GUIs or to the [2158] [2159] [2160] [2161] [2162] [2163] Underfull \hbox (badness 1448) in paragraph at lines 6003--6008 []\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject s, cor-re-spond-ing to call-ing [2164] [2165] [2166] [2167] [2168] [2169] [2170] [2171] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 6550. Underfull \hbox (badness 1371) in paragraph at lines 6554--6556 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to [2172] Underfull \hbox (badness 1502) in paragraph at lines 6643--6648 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 6643--6648 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [2173] [2174] [2175] Underfull \hbox (badness 10000) in paragraph at lines 6816--6825 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, [2176] Underfull \hbox (badness 2150) in paragraph at lines 6880--6883 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [2177] [2178] Underfull \hbox (badness 3118) in paragraph at lines 7019--7021 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [2179] [2180] [2181] Underfull \hbox (badness 1325) in paragraph at lines 7198--7202 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/it/10 available.pack ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able [2182] Underfull \hbox (badness 1424) in paragraph at lines 7290--7293 []\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p tm/m/it/10 not \T1/ptm/m/n/10 passed to [2183] Underfull \hbox (badness 3219) in paragraph at lines 7361--7368 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/i t/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 7361--7368 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 7361--7368 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by Underfull \hbox (badness 1596) in paragraph at lines 7361--7368 [][][]\T1/zi4/m/it/10 getOption[][][]("install.packages.compile.from.source")[] \T1/ptm/m/n/10 . []\T1/zi4/m/it/10 type = "both" []\T1/ptm/m/n/10 will be silen tly Underfull \hbox (badness 2932) in paragraph at lines 7369--7372 []\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/it/10 type = "source" []\T1/p tm/m/n/10 al-ways works pro-vided the pack-age con-tains no [2184] Underfull \hbox (badness 1024) in paragraph at lines 7499--7502 []\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/it/10 available. packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 , ] []\T1/ ptm/m/n/10 will [2185] Underfull \hbox (badness 10000) in paragraph at lines 7532--7537 [][][]\T1/zi4/m/it/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/i t/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 download. packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 installed.packages[][][] []\T1/ptm/m/n/10 , [2186] Underfull \hbox (badness 5133) in paragraph at lines 7591--7595 []\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each pack-age's [2187] [2188] [2189] [2190] [2191] [2192] [2193] [2194] [2195] [2196] [2197] Underfull \hbox (badness 10000) in paragraph at lines 8252--8254 []\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/it/10 methods(..)[]\T1/pt m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class [2198] [2199] [2200] [2201] [2202] [2203] [2204] [2205] [2206] [2207] [2208] [2209] Underfull \hbox (badness 2310) in paragraph at lines 9016--9021 []\T1/ptm/m/n/10 If a `\T1/zi4/m/it/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [2210] [2211] [2212] [2213] [2214] [2215] [2216] [2217] [2218] Underfull \hbox (badness 1248) in paragraph at lines 9582--9586 []\T1/zi4/m/it/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/ m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the [2219] Underfull \hbox (badness 1789) in paragraph at lines 9662--9664 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [2220] [2221] [2222] [2223] Underfull \hbox (badness 2600) in paragraph at lines 9886--9889 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the name of the help topic; de-faults to [2224] [2225] [2226] [2227] [2228] [2229] [2230] [2231] [2232] Underfull \hbox (badness 1097) in paragraph at lines 10513--10516 []\T1/ptm/m/n/10 The name []\T1/zi4/m/it/10 "clipboard" []\T1/ptm/m/n/10 may al so be used on Win-dows, in which case [2233] [2234] Underfull \hbox (badness 3000) in paragraph at lines 10649--10654 [][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m /n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/ it/10 read.table[][][][]\T1/ptm/m/n/10 ; [2235] [2236] [2237] [2238] [2239] [2240] [2241] [2242] [2243] Underfull \hbox (badness 2134) in paragraph at lines 11243--11248 [][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m /n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/ it/10 write.table[][][][]\T1/ptm/m/n/10 ; [2244] Underfull \hbox (badness 10000) in paragraph at lines 11299--11304 []\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for Underfull \hbox (badness 10000) in paragraph at lines 11299--11304 []\T1/zi4/m/it/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 HKEY_C LASSES_ROOT[]\T1/ptm/m/n/10 . []\T1/zi4/m/it/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/ 10 , [2245] [2246] [2247] [2248] [2249] [2250] [2251] [2252] Underfull \hbox (badness 2469) in paragraph at lines 11797--11801 []\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia , The Free En-cy-clo-pe-dia. Underfull \hbox (badness 3428) in paragraph at lines 11797--11801 [][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / w / index . php ? title = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac- [2253] [2254] [2255] [2256] [2257] [2258] [2259] Underfull \hbox (badness 4060) in paragraph at lines 12224--12227 []\T1/ptm/m/n/10 If `[]\T1/zi4/m/it/10 --default-packages[]\T1/ptm/m/n/10 ' is not used, then []\T1/zi4/m/it/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron- ment vari-able Overfull \hbox (18.77168pt too wide) in paragraph at lines 12247--12247 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] [2260] [2261] [2262] [2263] Underfull \hbox (badness 2150) in paragraph at lines 12502--12504 [][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/ ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / www . gnu . org / software / emac s / manual / [2264] [2265] [2266] [2267] Underfull \hbox (badness 10000) in paragraph at lines 12722--12726 []\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/it/10 stylepath []\T1/ptm/m/n/10 is now taken from the en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 12755--12761 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a Underfull \hbox (badness 2762) in paragraph at lines 12770--12776 \T1/ptm/m/n/10 UTF-8 lo-cales (note that pdf-TeX as-sumes UTF-8 by de-fault sin ce 2018). 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If [2270] Underfull \hbox (badness 4779) in paragraph at lines 12985--12987 []\T1/ptm/m/n/10 The file `\T1/zi4/m/it/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure s the R GUI ([]\T1/zi4/m/it/10 Rgui[]\T1/ptm/m/n/10 ) con-sole un-der MS Win-do ws and Underfull \hbox (badness 1077) in paragraph at lines 13015--13022 \T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p er-sonal' di-rec-tory, oth-er-wise to [2271] [2272] [2273] [2274] [2275] [2276] [2277] Underfull \hbox (badness 3780) in paragraph at lines 13437--13443 []\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][][]\ T1/zi4/m/it/10 options[][][]("BioC_mirror")[]\T1/ptm/m/n/10 , e.g. via Underfull \hbox (badness 2635) in paragraph at lines 13455--13458 []\T1/ptm/m/n/10 Repository `[]\T1/zi4/m/it/10 CRAN[]\T1/ptm/m/n/10 ' is treate d spe-cially: the value is taken from the cur-rent set-ting of [2278] [2279] [2280] [2281] Underfull \hbox (badness 2302) in paragraph at lines 13660--13662 []\T1/ptm/m/n/10 Convert file paths to the short form. 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Ob- [2293] [2294] [2295] Underfull \hbox (badness 1460) in paragraph at lines 14565--14573 \T1/ptm/m/n/10 drives can be in-cluded in filepaths). 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[1] [2] Underfull \hbox (badness 6252) in paragraph at lines 143--151 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/zi4/m/n/10 x [ ]\T1/ptm/m/n/10 such that []\T1/zi4/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/ptm/m/n/10 equals []\T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits []\T 1/ptm/m/n/10 if []\T1/zi4/m/n/10 double.base Underfull \hbox (badness 10000) in paragraph at lines 143--151 []\T1/ptm/m/n/10 is 2 or []\T1/zi4/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0 ; oth-er-wise, it is []\T1/zi4/m/n/10 (double.base Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/z i4/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . 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Val-ues [6] [7] [8] [9] Underfull \hbox (badness 2556) in paragraph at lines 571--577 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/zi4/m/n/10 insertions[]\T1/ptm/m/n/10 ', [10] [11] [12] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [13{/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] (/usr/share/texlive/texmf-dist/tex/latex/base/t1cmtt.fd) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [24] [25] Underfull \hbox (badness 10000) in paragraph at lines 1611--1617 [26] [27] [28] [29] [30] [31] [32] Underfull \hbox (badness 1242) in paragraph at lines 2023--2026 []\T1/ptm/m/n/10 Since \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.3.0, the \T1/ptm/m/it/ 10 de-fault \T1/ptm/m/n/10 method will call []\T1/zi4/m/n/10 as.data.frame.vect or() []\T1/ptm/m/n/10 for atomic (as by Underfull \hbox (badness 10000) in paragraph at lines 2027--2031 []\T1/ptm/m/n/10 Direct calls to []\T1/zi4/m/n/10 as.data.frame.() []\T1 /ptm/m/n/10 are still pos-si-ble (base pack-age!), for Underfull \hbox (badness 5490) in paragraph at lines 2027--2031 \T1/ptm/m/n/10 12 atomic base classes, but will dep-re-cated (al-ready vis-i-bl y by set-ting en-vi-ron-ment Underfull \hbox (badness 10000) in paragraph at lines 2027--2031 \T1/ptm/m/n/10 vari-able []\T1/zi4/m/n/10 _R_CHECK_AS_DATA_FRAME_EXPLICIT_METHO D_ []\T1/ptm/m/n/10 to non-empty) where call-ing [33] [34] [35] Overfull \hbox (26.27782pt too wide) in paragraph at lines 2267--2267 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] Underfull \hbox (badness 1721) in paragraph at lines 2933--2937 [][][]\T1/zi4/m/n/10 assign[][][] []\T1/ptm/m/n/10 (and its in-verse [][][]\T1/ zi4/m/n/10 get[][][][]\T1/ptm/m/n/10 ), for ``sub-assign-ment'' such as []\T1/z i4/m/n/10 x[i] <- v[]\T1/ptm/m/n/10 , see [][][]\T1/zi4/m/n/10 [<-[][][][]\T1/p tm/m/n/10 ; fur-ther, [47] [48] [49] [50] [51] [52] [53] Underfull \hbox (badness 2538) in paragraph at lines 3413--3416 []\T1/zi4/m/n/10 unCfillPOSIXlt(x) []\T1/ptm/m/n/10 is a fast [][]prim-i-tive[] [][] ver-sion of []\T1/zi4/m/n/10 balancePOSIXlt(x, fill.only=TRUE, [54] [55] [56] [57] [58] Underfull \vbox (badness 10000) has occurred while \output is active [59] [60] [61] [62] [63] [64] [65] Underfull \hbox (badness 10000) in paragraph at lines 4209--4211 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] Underfull \hbox (badness 2521) in paragraph at lines 5506--5508 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [87] [88] [89] [90] [91] [92] [93] [94] [95] [96] [97] [98] [99] [100] [101] [102] [103] [104] [105] Overfull \hbox (5.27168pt too wide) in paragraph at lines 6771--6771 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [106] [107] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] [118] Underfull \hbox (badness 1303) in paragraph at lines 7664--7671 []\T1/zi4/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/zi4/m/n/10 descri ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/zi4/m/n/10 "r" []\T1/ptm/m/n /10 only. This reads the Underfull \hbox (badness 2261) in paragraph at lines 7675--7680 \T1/zi4/m/n/10 / / github . com / astrand / xclip$[][]\T1/ptm/m/n/10 ) or []\T1 /zi4/m/n/10 xsel []\T1/ptm/m/n/10 ([][]$\T1/zi4/m/n/10 https : / / www . vergen et . net / ~conrad / software / [119] [120] Underfull \vbox (badness 10000) has occurred while \output is active [121] Underfull \vbox (badness 10000) has occurred while \output is active [122] [123] [124] [125] [126] [127] [128] [129] Underfull \hbox (badness 2096) in paragraph at lines 8354--8358 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [130] [131] Underfull \hbox (badness 2351) in paragraph at lines 8469--8472 [][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac -cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t able[][][][]\T1/ptm/m/n/10 , [132] [133] [134] [135] [136] Underfull \hbox (badness 4479) in paragraph at lines 8786--8797 [][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names), [137] [138] [139] [140] [141] [142] Underfull \hbox (badness 1629) in paragraph at lines 9216--9228 []\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a re ig-nored, and real times Underfull \hbox (badness 2875) in paragraph at lines 9216--9228 []\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19 69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19 69-12-31 [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] Underfull \hbox (badness 1178) in paragraph at lines 10064--10068 []\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names (see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de- [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188] [189] [190] [191] Underfull \hbox (badness 2744) in paragraph at lines 12398--12400 []\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma y lead to con-fu-sion (see [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223] Underfull \hbox (badness 2253) in paragraph at lines 14602--14604 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [224] Underfull \hbox (badness 1490) in paragraph at lines 14637--14640 []\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m a-tion is given about the [225] Underfull \hbox (badness 1565) in paragraph at lines 14719--14723 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym- bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][] []\T1/ptm/m/n/10 , and [226] Underfull \hbox (badness 4927) in paragraph at lines 14770--14772 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4 /m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with []\T1/zi4/m/n/10 fsep = [227] Underfull \hbox (badness 3148) in paragraph at lines 14872--14877 [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.fi les[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 help[][][][]\T1/ptm/m/n/10 ; [ ][][]\T1/zi4/m/n/10 RShowDoc[][][] []\T1/ptm/m/n/10 call []\T1/zi4/m/n/10 file. show() []\T1/ptm/m/n/10 for []\T1/zi4/m/n/10 type = "text"[]\T1/ptm/m/n/10 . Co n-sider [228] Underfull \hbox (badness 1466) in paragraph at lines 14919--14922 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T 1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and [229] [230] Underfull \hbox (badness 10000) in paragraph at lines 15050--15054 [][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1 /ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 15061--15064 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [231] [232] [233] [234] [235] Underfull \hbox (badness 3965) in paragraph at lines 15358--15362 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [236] [237] [238] [239] [240] [241] [242] [243] [244] [245] [246] [247] Underfull \hbox (badness 4429) in paragraph at lines 16147--16150 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] []\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for [248] [249] Underfull \hbox (badness 10000) in paragraph at lines 16253--16255 []\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , which calls []\T1/zi4/m/n/10 .format.zeros(*, [250] Underfull \hbox (badness 2035) in paragraph at lines 16326--16330 []\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1 0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0: for use within [251] Underfull \vbox (badness 10000) has occurred while \output is active [252] [253] [254] [255] [256] [257] [258] [259] [260] Underfull \hbox (badness 2452) in paragraph at lines 16939--16943 []\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron -ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 16939--16943 \T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_ GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and [261] [262] Underfull \hbox (badness 1092) in paragraph at lines 17112--17117 [][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t er the DLL has been loaded us-ing [263] [264] [265] [266] Underfull \hbox (badness 6741) in paragraph at lines 17365--17369 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [ ]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt m/m/n/10 , [267] [268] [269] [270] [271] [272] [273] [274] [275] [276] [277] Underfull \vbox (badness 10000) has occurred while \output is active [278] Underfull \vbox (badness 10000) has occurred while \output is active [279] [280] [281] [282] [283] [284] [285] [286] [287] [288] Underfull \hbox (badness 1769) in paragraph at lines 18861--18864 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [289] [290] [291] [292] [293] Underfull \hbox (badness 10000) in paragraph at lines 19156--19158 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww w . unicode . org / reports / tr35 / Underfull \hbox (badness 2088) in paragraph at lines 19162--19171 []\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T 1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu / [294] [295] [296] [297] [298] [299] [300] [301] [302] Underfull \hbox (badness 1442) in paragraph at lines 19770--19772 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see [303] [304] [305] [306] [307] Underfull \hbox (badness 10000) in paragraph at lines 20103--20109 [308] [309] [310] [311] Underfull \hbox (badness 1248) in paragraph at lines 20352--20355 []\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\ T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 " complex"[]\T1/ptm/m/n/10 , [312] [313] [314] [315] [316] Underfull \hbox (badness 4739) in paragraph at lines 20615--20617 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [317] [318] [319] [320] [321] [322] [323] [324] [325] [326] [327] [328] [329] [330] [331] [332] [333] Underfull \hbox (badness 2469) in paragraph at lines 21699--21704 []\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T 1/ptm/m/n/10 and [334] [335] Underfull \hbox (badness 1675) in paragraph at lines 21786--21795 []\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3189) in paragraph at lines 21796--21809 []\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini- tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set or empty, the Underfull \hbox (badness 10000) in paragraph at lines 21844--21847 []\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid- Underfull \hbox (badness 4752) in paragraph at lines 21844--21847 \T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may be opened by [336] [337] Underfull \hbox (badness 1014) in paragraph at lines 21978--21983 []\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if [338] [339] [340] [341] [342] [343] [344] [345] [346] [347] [348] [349] [350] Underfull \hbox (badness 1264) in paragraph at lines 22825--22833 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [351] Underfull \hbox (badness 4441) in paragraph at lines 22859--22862 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/ ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 , [352] [353] [354] [355] [356] [357] [358] [359] [360] [361] [362] [363] Underfull \hbox (badness 5231) in paragraph at lines 23669--23671 []\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm /m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) == [364] [365] [366] [367] [368] [369] [370] [371] [372] [373] [374] [375] [376] [377] [378] [379] [380] [381] Underfull \hbox (badness 10000) in paragraph at lines 24762--24768 [][]$\T1/zi4/m/n/10 https : / / zlib . net/$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m /n/10 https : / / en . wikipedia . org / wiki / Gzip$[][]\T1/ptm/m/n/10 , [][]$ \T1/zi4/m/n/10 http : / / www . bzip . org/$[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 24762--24768 [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm /m/n/10 , [][]$\T1/zi4/m/n/10 https : / / tukaani . org / xz/$[][] \T1/ptm/m/n/ 10 and [][]$\T1/zi4/m/n/10 https : [382] [383] [384] [385] [386] [387] [388] [389] Underfull \hbox (badness 2790) in paragraph at lines 25271--25274 []\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes -sages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 25271--25274 []\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti ll mes-sages, so can be sup-pressed by [390] [391] [392] [393] [394] Underfull \hbox (badness 1194) in paragraph at lines 25594--25597 []\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1 0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/ m/n/10 . It calls [395] [396] [397] Underfull \hbox (badness 2368) in paragraph at lines 25801--25807 []\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n /10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r e-spond-ing list, i.e., [398] [399] [400] [401] [402] [403] Underfull \hbox (badness 10000) in paragraph at lines 26191--26194 []\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by [404] [405] [406] [407] [408] [409] [410] [411] [412] [413] Underfull \hbox (badness 10000) in paragraph at lines 26817--26819 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in% [414] [415] [416] [417] [418] [419] [420] Underfull \hbox (badness 2443) in paragraph at lines 27305--27313 \T1/ptm/m/n/10 suit-able char-ac-ter vec-tors as above, or nu-meric ver-sion ob -jects. For [421] [422] [423] [424] [425] [426] Underfull \hbox (badness 1881) in paragraph at lines 27723--27726 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are [427] Underfull \hbox (badness 6220) in paragraph at lines 27748--27750 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [428] Underfull \hbox (badness 2142) in paragraph at lines 27889--27893 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able [429] Underfull \hbox (badness 1968) in paragraph at lines 27946--27951 []\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\ T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able [430] [431] [432] Underfull \hbox (badness 10000) in paragraph at lines 28240--28246 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/ m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 28240--28246 \T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[] \T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 28240--28246 \T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de "[]\T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 10000) in paragraph at lines 28253--28256 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[ ][][] []\T1/ptm/m/n/10 (and hence[][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/pt m/m/n/10 and [433] Underfull \hbox (badness 2689) in paragraph at lines 28279--28281 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see Underfull \hbox (badness 10000) in paragraph at lines 28321--28326 []\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/ m/n/10 (and in-di-rectly Underfull \hbox (badness 2529) in paragraph at lines 28327--28338 \T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm /m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si- Underfull \hbox (badness 2512) in paragraph at lines 28327--28338 \T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u se and Underfull \hbox (badness 7203) in paragraph at lines 28339--28342 []\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T 1/ptm/m/n/10 and [434] [435] [436] [437] [438] [439] Underfull \hbox (badness 10000) in paragraph at lines 28756--28760 \T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU N(X[arrayindex.x], Y[arrayindex.y], [440] [441] [442] Underfull \hbox (badness 10000) in paragraph at lines 28903--28906 []\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex t=s, [443] Underfull \hbox (badness 7925) in paragraph at lines 28984--28988 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [ ]\T1/ptm/m/n/10 cor-re-sponds to Underfull \hbox (badness 1253) in paragraph at lines 28984--28988 [][][]\T1/zi4/m/n/10 parse[][][](text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 , which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) and [][][]\T1/zi4/m/n/10 class[][][] Underfull \hbox (badness 2521) in paragraph at lines 28989--28998 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt m/m/n/10 cor-re-sponds to [][][]\T1/zi4/m/n/10 parse[][][](text = s, [444] [445] [446] [447] [448] [449] [450] [451] [452] [453] [454] [455] [456] [457] [458] [459] Underfull \hbox (badness 2726) in paragraph at lines 30001--30004 []\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed out-put, see [460] [461] [462] [463] [464] [465] [466] [467] [468] [469] [470] [471] [472] [473] [474] [475] [476] [477] [478] [479] [480] [481] [482] [483] [484] [485] [486] Underfull \hbox (badness 1533) in paragraph at lines 31798--31801 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [487] [488] [489] Underfull \hbox (badness 1163) in paragraph at lines 31961--31972 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [490] [491] [492] [493] [494] [495] [496] Underfull \vbox (badness 3803) has occurred while \output is active [497] [498] [499] [500] [501] [502] [503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514] [515] Underfull \hbox (badness 10000) in paragraph at lines 33627--33631 []\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 33627--33631 []\T1/zi4/m/n/10 "(?[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions of the matches are also re-turned by name. Underfull \hbox (badness 3557) in paragraph at lines 33648--33650 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919799 / Underfull \hbox (badness 1122) in paragraph at lines 33651--33655 []\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi 4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m /n/10 https : / / www . pcre . org / [516] [517] Underfull \vbox (badness 10000) has occurred while \output is active [518] [519] [520] [521] [522] [523] [524] [525] Underfull \hbox (badness 1655) in paragraph at lines 34252--34254 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1 /ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for [526] [527] [528] [529] [530] [531] [532] [533] [534] [535] [536] [537] [538] [539] [540] [541] [542] [543] [544] Underfull \hbox (badness 2261) in paragraph at lines 35458--35463 []\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 1, it ap-plies to all fields; oth-er-wise, if [545] [546] [547] [548] [549] [550] [551] [552] [553] [554] [555] [556] [557] [558] [559] [560] Underfull \hbox (badness 3668) in paragraph at lines 36493--36497 []\T1/zi4/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in- te-ger con-nec-tion de-scrip-tors for use with [561] Underfull \hbox (badness 10000) in paragraph at lines 36584--36595 \T1/zi4/m/n/10 / / learn . microsoft . com / en-[]us / cpp / c-[]language / par sing-[]c-[]command-[]line-[]arguments ? [562] [563] [564] [565] [566] [567] [568] [569] [570] [571] [572] [573] [574] [575] [576] [577] [578] [579] [580] [581] [582] [583] [584] [585] Underfull \hbox (badness 10000) in paragraph at lines 38129--38131 [][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919 799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for [586] Underfull \vbox (badness 3803) has occurred while \output is active [587] [588] [589] [590] [591] [592] Underfull \hbox (badness 2913) in paragraph at lines 38549--38553 \T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur- rently un-der eval-u-a-tion, ex-ceeds the limit set by [593] [594] [595] Underfull \hbox (badness 1072) in paragraph at lines 38795--38799 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 38800--38804 []\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/ m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi 4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ', [596] Underfull \hbox (badness 10000) in paragraph at lines 38840--38846 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 38840--38846 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 38840--38846 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in Underfull \hbox (badness 3009) in paragraph at lines 38855--38862 []\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt m/m/n/10 ' which is read Underfull \hbox (badness 1038) in paragraph at lines 38855--38862 \T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron- ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 38855--38862 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 38855--38862 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [597] [598] [599] Underfull \hbox (badness 2644) in paragraph at lines 39090--39094 []\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T 1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an [600] [601] [602] Underfull \hbox (badness 1142) in paragraph at lines 39258--39264 []\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the []\T1/zi4/m/n/10 fo rmat []\T1/ptm/m/n/10 meth-ods is []\T1/zi4/m/n/10 "%Y-%m-%d [603] [604] [605] [606] [607] [608] [609] [610] [611] [612] [613] [614] [615] [616] [617] [618] [619] [620] [621] [622] [623] Underfull \hbox (badness 1158) in paragraph at lines 40617--40619 []\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil e.type) []\T1/ptm/m/n/10 for the de-fault [624] [625] [626] [627] [628] [629] [630] [631] [632] [633] Underfull \hbox (badness 1137) in paragraph at lines 41212--41218 []\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild -cards in file paths. For pre-cise de-tails Underfull \hbox (badness 4967) in paragraph at lines 41231--41236 []\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10 this may need to be matched ex-plic-itly: for ex-am-ple [634] [635] Underfull \hbox (badness 1616) in paragraph at lines 41351--41356 []\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al ikes, pro-vided only the POSIX op-tions [636] [637] [638] [639] Underfull \vbox (badness 3803) has occurred while \output is active [640] [641] [642] [643] [644] Underfull \hbox (badness 1472) in paragraph at lines 41898--41901 []\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions keep their source in-clud-ing com-ments, see [645] [646] [647] [648] [649] [650] [651] [652] [653] [654] [655] [656] [657] Underfull \vbox (badness 3803) has occurred while \output is active [658] Underfull \hbox (badness 10000) in paragraph at lines 42824--42828 []\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/n/10 bin []\T1/ptm/m/n/10 can have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4/ m/n/10 length(bin) > [659] [660] [661] [662] Underfull \hbox (badness 10000) in paragraph at lines 43083--43086 [][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [ ][]$https : / / developer . r-[]project . org / [663] [664] [665] Underfull \hbox (badness 10000) in paragraph at lines 43267--43271 [][][]\T1/zi4/m/n/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/ 10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 taskCallback Manager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer . [666] [667] [668] [669] [670] [671] [672] [673] [674] [675] Underfull \hbox (badness 10000) in paragraph at lines 43916--43919 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / data . iana . org / time-[ ]zones / [676] [677] [678] [679] [680] Underfull \vbox (badness 3803) has occurred while \output is active [681] [682] [683] [684] [685] [686] [687] [688] Underfull \hbox (badness 1990) in paragraph at lines 44837--44845 []\T1/zi4/m/n/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any er-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 44837--44845 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ][]\T1/zi4/m/n/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less [689] [690] [691] [692] [693] [694] [695] [696] [697] [698] [699] [700] [701] [702] [703] [704] Underfull \hbox (badness 2452) in paragraph at lines 45834--45840 [][][]\T1/zi4/m/n/10 file[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.acc ess[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.append[][][][]\T1/ptm/m/n /10 , [][][]\T1/zi4/m/n/10 file.copy[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/ 10 file.create[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.exists[][][][] \T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [705] [706] [707] [708] [709] [710] Underfull \hbox (badness 3668) in paragraph at lines 46232--46234 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di- ately, even if [711] [712] Underfull \hbox (badness 2401) in paragraph at lines 46362--46366 []\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/n/10 options[][][]("w arn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [713] [714] Underfull \hbox (badness 3492) in paragraph at lines 46486--46488 []\T1/zi4/m/n/10 weekdays []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 months []\T1/pt m/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e., [715] Underfull \hbox (badness 2111) in paragraph at lines 46572--46577 \T1/ptm/m/n/10 If [][][]\T1/zi4/m/n/10 names[][][](.dimnames) []\T1/ptm/m/n/10 is not empty, these are used as col-umn names. [716] [717] [718] [719] Underfull \hbox (badness 4001) in paragraph at lines 46818--46820 []\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/n/10 https : / / developer . [720] [721] [722] [723] [724] [725] Underfull \hbox (badness 5417) in paragraph at lines 47185--47189 []\T1/zi4/m/n/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-ren tly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [726] Underfull \hbox (badness 10000) in paragraph at lines 47246--47250 []\T1/zi4/m/n/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-da rd' reg-exps, in-clud-ing el-e-ments named [727]) (./compiler-pkg.tex [728] Chapter 2. [729] [730] [731] [732]) (./datasets-pkg.tex Chapter 3. [733] [734] [735] [736] [737] [738] [739] [740] [741] [742] [743] [744] [745] [746] [747] [748] [749] Underfull \hbox (badness 1097) in paragraph at lines 1037--1041 []\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th e iden-ti-fi-ca-tion of crim-i-nals. [750] [751] [752] [753] [754] [755] [756] [757] [758] [759] [760] [761] [762] [763] [764] [765] [766] [767] [768] [769] [770] [771] [772] [773] [774] [775] [776] [777] [778] [779] [780] [781] [782] [783] [784] [785] [786] [787] [788] [789] [790] [791] Overfull \hbox (2.27475pt too wide) in paragraph at lines 3508--3508 []\T1/zi4/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis t.html#Geographic%20Centers[] [792] [793] [794] [795] [796] [797] [798] [799] [800] [801] [802] [803] [804] [805] [806] [807] [808] [809] [810] [811] [812] [813] [814] [815]) (./grDevices-pkg.tex [816] Chapter 4. [817] [818] [819] [820] [821] Underfull \hbox (badness 2221) in paragraph at lines 282--286 []\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/n/10 c(mi, ma, n.)[]\ T1/ptm/m/n/10 , with iden-ti-cal mean-ing to Underfull \hbox (badness 10000) in paragraph at lines 298--303 []\T1/ptm/m/n/10 Apart from that, [][][]\T1/zi4/m/n/10 axisTicks[][][]() []\T1/ ptm/m/n/10 just calls the C func-tion []\T1/zi4/m/n/10 CreateAtVector() []\T1/p tm/m/n/10 in Underfull \hbox (badness 1852) in paragraph at lines 298--303 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 /src/main/plot.c\T1/ptm/m/n/10 ' which is also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack-age func-t ion [822] [823] [824] [825] [826] [827] [828] [829] [830] [831] Underfull \hbox (badness 1424) in paragraph at lines 899--901 [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) an d []\T1/zi4/m/n/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also be spec-i-fied as [832] [833] [834] [835] Underfull \hbox (badness 5175) in paragraph at lines 1193--1195 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [836] [837] Underfull \hbox (badness 2512) in paragraph at lines 1312--1314 []\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/n/10 https : / / web . arc hive . org / web / 20190613001950 / http : / / efg2 . com / [838] [839] [840] [841] [842] Underfull \hbox (badness 1490) in paragraph at lines 1612--1617 \T1/ptm/m/n/10 by [][][]\T1/zi4/m/n/10 rasterImage[][][] []\T1/ptm/m/n/10 and [ ][][]\T1/zi4/m/n/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues []\T 1/zi4/m/n/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "yes" []\T1/ptm/m/n/10 and Underfull \hbox (badness 3302) in paragraph at lines 1625--1629 []\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo re of [843] [844] [845] [846] [847] [848] [849] Underfull \hbox (badness 1325) in paragraph at lines 2040--2050 []\T1/zi4/m/n/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "pngmono"[]\T1/ptm/ m/n/10 , []\T1/zi4/m/n/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "pngalph a"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/1 0 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "bmp32b"[]\T1/ptm/m/n/10 , [850] Underfull \hbox (badness 10000) in paragraph at lines 2152--2154 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [851] [852] [853] Underfull \hbox (badness 6758) in paragraph at lines 2338--2341 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [854] [855] [856] [857] [858] [859] [860] [861] [862] [863] [864] [865] Underfull \hbox (badness 10000) in paragraph at lines 3089--3090 [866] [867] [868] [869] [870] [871] [872] [873] [874] [875] [876] [877] Underfull \vbox (badness 3803) has occurred while \output is active [878] [879] [880] [881] Underfull \vbox (badness 10000) has occurred while \output is active [882] Underfull \hbox (badness 10000) in paragraph at lines 4165--4168 []\T1/ptm/m/n/10 For use with []\T1/zi4/m/n/10 onefile = FALSE []\T1/ptm/m/n/10 give a C in-te-ger for-mat such as [883] [884] [885] [886] [887] [888] [889] [890] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.symbol}) has been already used, duplicate ignored \relax l.4681 \aliasA{symbol}{plotmath}{symbol} [891] [892] [893] [894] [895] [896] Underfull \hbox (badness 1584) in paragraph at lines 5067--5069 []\T1/ptm/m/n/10 For type []\T1/zi4/m/n/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1/ zi4/m/n/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See Underfull \hbox (badness 1067) in paragraph at lines 5071--5078 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [897] [898] [899] [900] [901] Underfull \hbox (badness 1377) in paragraph at lines 5387--5392 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [902] Underfull \hbox (badness 1418) in paragraph at lines 5463--5470 \T1/ptm/m/n/10 it is one of []\T1/zi4/m/n/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\ T1/zi4/m/n/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Courier"[]\T1/ptm/m /n/10 , []\T1/zi4/m/n/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Helvet ica-Narrow"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 1755) in paragraph at lines 5481--5483 []\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East Asian lan-guages -- see [903] Underfull \hbox (badness 1377) in paragraph at lines 5592--5597 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [ ]\T1/zi4/m/n/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and [904] Underfull \hbox (badness 7344) in paragraph at lines 5661--5663 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [905] [906] [907] Underfull \hbox (badness 2035) in paragraph at lines 5799--5808 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5799--5808 \T1/ptm/m/n/10 vided: []\T1/zi4/m/n/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi4 /m/n/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Courier"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Helvetica-Na rrow"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5799--5808 []\T1/zi4/m/n/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Pal atino" []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 "Times"[]\T1/ptm/m/n/10 ; []\T1/zi 4/m/n/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "URWBookman"[]\T1/ptm/m /n/10 , [908] Underfull \hbox (badness 10000) in paragraph at lines 5867--5869 []\T1/zi4/m/n/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/z i4/m/n/10 https : / / ftp . gnu . org / pub / non-[]gnu / [909] [910] Underfull \hbox (badness 1546) in paragraph at lines 6012--6020 []\T1/ptm/m/n/10 arguments []\T1/zi4/m/n/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi4 /m/n/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 title[]\T1/ptm/m/n/10 , []\T1 /zi4/m/n/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 encoding[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 fg[]\T1/ptm/m/n/10 , [] \T1/zi4/m/n/10 width[]\T1/ptm/m/n/10 , [911] [912] [913] [914] [915] [916] [917] [918] [919] Underfull \hbox (badness 10000) in paragraph at lines 6551--6554 []\T1/zi4/m/n/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (r ed/green/blue) into HSV space [920] Underfull \vbox (badness 3803) has occurred while \output is active [921] [922] [923] Overfull \hbox (9.73488pt too wide) in paragraph at lines 6788--6788 []\T1/zi4/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro blem (without \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 continuous=TRUE\TS1/zi4/m/n/9 '\T1/ zi4/m/n/9 ):[] [924] [925] [926] [927] [928] [929] [930] [931] [932] Underfull \hbox (badness 1189) in paragraph at lines 7414--7416 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [933] [934] Underfull \hbox (badness 10000) in paragraph at lines 7519--7521 []\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for CJ K lan-guages and [935] [936] [937] [938] [939] Underfull \hbox (badness 3780) in paragraph at lines 7833--7839 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of []\T1/zi4/m/n /10 "AvantGarde"[]\T1/ptm/m/n/10 , [940] [941] [942] [943] [944]) (./graphics-pkg.tex Chapter 5. [945] [946] [947] [948] [949] [950] [951] [952] [953] [954] [955] Underfull \vbox (badness 3803) has occurred while \output is active [956] [957] [958] [959] [960] [961] Overfull \hbox (12.71341pt too wide) in paragraph at lines 1034--1034 [] \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = " # {passengers}", legend.text = TRUE)[] [962] [963] [964] [965] [966] [967] Underfull \hbox (badness 4634) in paragraph at lines 1408--1411 [][][]\T1/zi4/m/n/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready work s nowa-days with data.frames; [][][]\T1/zi4/m/n/10 boxplot.formula[][][][]\T1/p tm/m/n/10 , [968] [969] [970] [971] [972] [973] [974] [975] [976] [977] [978] [979] [980] [981] [982] [983] [984] Underfull \hbox (badness 1728) in paragraph at lines 2388--2390 []\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/n/10 "n" []\T1/ptm/m/n/10 to sup-press and see also [985] Underfull \hbox (badness 1009) in paragraph at lines 2481--2488 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [986] [987] [988] [989] [990] [991] [992] [993] [994] [995] [996] [997] [998] [999] [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] Underfull \vbox (badness 10000) has occurred while \output is active [1009] Underfull \vbox (badness 10000) has occurred while \output is active [1010] [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020] [1021] Underfull \hbox (badness 3229) in paragraph at lines 4715--4720 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used, see [1022] [1023] [1024] [1025] [1026] Underfull \hbox (badness 1107) in paragraph at lines 5144--5150 []\T1/ptm/m/n/10 is []\T1/zi4/m/n/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sca led to user co-or-di-nates. Note that []\T1/zi4/m/n/10 c([][]strwidth[][][](ch) , [1027] [1028] Underfull \hbox (badness 10000) in paragraph at lines 5273--5276 [1029 >/library/graphics/help/figures//mai.pdf >] Underfull \hbox (badness 10000) in paragraph at lines 5334--5336 Underfull \vbox (badness 10000) has occurred while \output is active [1030] [1031 >/library/graphics/help/figures//oma.pdf >] [1032] [1033] Underfull \vbox (badness 3803) has occurred while \output is active [1034] [1035] [1036] [1037] [1038] [1039] [1040] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.plot}) ha s been already used, duplicate ignored \relax l.6005 \aliasA{plot}{plot.default}{plot} [1041] [1042] [1043] [1044] [1045] [1046] [1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6909--6910 [][] [1055 >/library/graphics/help/figures//pch.pdf >] [1056] Underfull \vbox (badness 3803) has occurred while \output is active [1057] [1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] [1066] [1067] [1068] [1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] [1078] [1079] [1080] [1081] [1082] [1083] [1084] [1085] [1086] [1087] [1088] [1089] Underfull \hbox (badness 4954) in paragraph at lines 9001--9003 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m /n/10 par(c("font.sub", Underfull \hbox (badness 1019) in paragraph at lines 9003--9005 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/n/10 par (c("font.lab", "cex.lab", [1090] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units}) h as been already used, duplicate ignored \relax l.9083 \HeaderA{units}{Graphical Units}{units} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units.1}) has been already used, duplicate ignored \relax l.9083 \HeaderA{units}{Graphical Units}{units} [1091] [1092] [1093] [1094]) (./grid-pkg.tex Chapter 6. [1095] [1096] [1097] [1098] [1099] [1100] [1101] [1102] [1103] Underfull \hbox (badness 2680) in paragraph at lines 550--553 []\T1/ptm/m/n/10 Note that []\T1/zi4/m/n/10 preDrawDetails []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal-c u-la-tion of [1104] [1105] [1106] [1107] [1108] [1109] [1110] [1111] [1112] [1113] [1114] Underfull \hbox (badness 4279) in paragraph at lines 1187--1196 [][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/n/10 pushViewport[][][][]\T1/p tm/m/n/10 , [][][]\T1/zi4/m/n/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/ zi4/m/n/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 seekViewpo rt[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 upViewport[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/zi4/m/n/10 unit[][][][]\T1/ptm/m/n/10 , [1115] [1116] [1117] [1118] [1119] [1120] [1121] [1122] [1123] [1124] [1125] [1126] [1127] [1128] [1129] [1130] [1131] [1132] [1133] [1134] [1135] [1136] [1137] [1138] [1139] [1140] [1141] [1142] [1143] [1144] [1145] [1146] Underfull \hbox (badness 10000) in paragraph at lines 3102--3104 []\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix; see [1147] [1148] [1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] [1157] [1158] [1159] [1160] [1161] [1162] Underfull \vbox (badness 10000) has occurred while \output is active [1163] [1164] [1165] [1166] [1167] [1168] [1169] [1170] [1171] [1172] [1173] [1174] [1175] [1176] Underfull \hbox (badness 1067) in paragraph at lines 4840--4843 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1177] [1178] [1179] [1180] [1181] [1182] Underfull \hbox (badness 7256) in paragraph at lines 5191--5193 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1183] [1184] [1185] [1186] [1187] [1188] [1189] Underfull \hbox (badness 2142) in paragraph at lines 5645--5649 []\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/n/10 gridGTreeCoords []\T1/ptm/m/n/1 0 a list of ei-ther []\T1/zi4/m/n/10 "GridGrobCoords" []\T1/ptm/m/n/10 or [1190] [1191] Underfull \hbox (badness 4699) in paragraph at lines 5727--5732 []\T1/ptm/m/n/10 Either a []\T1/zi4/m/n/10 "GridGrobCoords" []\T1/ptm/m/n/10 ob -ject (a list of lists with com-po-nents []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 an d []\T1/zi4/m/n/10 y[]\T1/ptm/m/n/10 ) or a [1192] [1193] [1194] [1195] [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203] [1204] [1205] [1206] [1207] [1208] [1209] [1210] [1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218] [1219] [1220] [1221] [1222] [1223]) (./methods-pkg.tex [1224] Chapter 7. [1225] [1226] [1227] [1228] [1229] [1230] [1231] [1232] Underfull \vbox (badness 10000) has occurred while \output is active [1233] Underfull \vbox (badness 10000) has occurred while \output is active [1234] [1235] [1236] [1237] [1238] [1239] [1240] [1241] [1242] [1243] Underfull \hbox (badness 2237) in paragraph at lines 1385--1387 []\T1/ptm/m/n/10 The class []\T1/zi4/m/n/10 "className" []\T1/ptm/m/n/10 ex-ten ds []\T1/zi4/m/n/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/n/1 0 "package"[]\T1/ptm/m/n/10 , also of class [1244] [1245] [1246] [1247] [1248] [1249] [1250] [1251] [1252] Underfull \hbox (badness 10000) in paragraph at lines 1981--1986 []\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/n/10 insertSource []\T1/ptm/m/n/ 10 can be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1981--1986 \T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/n/10 insertSource []\T1/ptm/m /n/10 it calls []\T1/zi4/m/n/10 evalSource []\T1/ptm/m/n/10 to ob-tain the [1253] [1254] [1255] Underfull \hbox (badness 2213) in paragraph at lines 2213--2218 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use []\T1/zi4/m/n/10 where = [1256] [1257] [1258] [1259] [1260] Underfull \hbox (badness 10000) in paragraph at lines 2573--2576 []\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/n/10 setGeneric[][][] []\ T1/ptm/m/n/10 and [][][]\T1/zi4/m/n/10 setGroupGeneric[][][] []\T1/ptm/m/n/10 c re-ate ob-jects of class [1261] [1262] Underfull \hbox (badness 1132) in paragraph at lines 2713--2717 []\T1/ptm/m/n/10 In []\T1/zi4/m/n/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi4 /m/n/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/n/10 package []\T1/ptm/m/n/10 sl ot of the re-turned re-sult is in [1263] Underfull \hbox (badness 1033) in paragraph at lines 2745--2750 \T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/n/10 removeGeneric []\T1/ptm/m/n/10 r e-moves the func-tion it-self; []\T1/zi4/m/n/10 removeMethods []\T1/ptm/m/n/10 re-stores the [1264] [1265] [1266] [1267] [1268] [1269] [1270] Underfull \hbox (badness 1102) in paragraph at lines 3302--3304 []\T1/zi4/m/n/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string name of the pack-age (with-out the ex-tra-ne-ous [1271] [1272] [1273] [1274] [1275] [1276] Underfull \hbox (badness 10000) in paragraph at lines 3641--3650 []\T1/ptm/m/n/10 The [1277] Underfull \hbox (badness 10000) in paragraph at lines 3761--3762 [] \T1/zi4/m/n/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longit ude = "numeric", [1278] Underfull \hbox (badness 10000) in paragraph at lines 3845--3846 []\T1/zi4/m/n/10 Currency <- setClass("Currency", slots = c(unit = "character") , contains = [1279] [1280] [1281] [1282] [1283] [1284] [1285] [1286] [1287] [1288] Underfull \hbox (badness 1769) in paragraph at lines 4476--4482 []\T1/ptm/m/n/10 class [][][]\T1/zi4/m/n/10 MethodsList[][][] []\T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4476--4482 []\T1/zi4/m/n/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class [] [][]\T1/zi4/m/n/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion use d by [1289] [1290] [1291] [1292] [1293] [1294] [1295] [1296] [1297] [1298] Underfull \vbox (badness 10000) has occurred while \output is active [1299] [1300] [1301] Underfull \hbox (badness 4036) in paragraph at lines 5445--5448 []\T1/ptm/m/n/10 Object of class []\T1/zi4/m/n/10 "PossibleMethod" []\T1/ptm/m/ n/10 the method to use in re-sponse to a [1302] [1303] Underfull \hbox (badness 3803) in paragraph at lines 5520--5522 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1304] [1305] [1306] Underfull \hbox (badness 1087) in paragraph at lines 5752--5757 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1307] [1308] [1309] [1310] [1311] [1312] [1313] [1314] [1315] Underfull \hbox (badness 1675) in paragraph at lines 6459--6465 []\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/n/10 externalRef Method(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1316] [1317] [1318] [1319] Underfull \vbox (badness 10000) has occurred while \output is active [1320] [1321] [1322] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has been already used, duplicate ignored \relax l.6981 \aliasA{S4}{S3Part}{S4} [1323] [1324] [1325] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Complex}) has been already used, duplicate ignored \relax l.7237 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Logic}) h as been already used, duplicate ignored \relax l.7239 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) ha s been already used, duplicate ignored \relax l.7240 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7242 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignored \relax l.7243 \aliasA{Summary}{S4groupGeneric}{Summary} [1326] Underfull \hbox (badness 2050) in paragraph at lines 7304--7308 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1327] [1328] [1329] Underfull \hbox (badness 1286) in paragraph at lines 7492--7494 []\T1/ptm/m/n/10 for []\T1/zi4/m/n/10 .selectSuperClasses() []\T1/ptm/m/n/10 on ly, a [][][]\T1/zi4/m/n/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions, t yp-i-cally [1330] [1331] [1332] [1333] [1334] [1335] [1336] [1337] [1338] [1339] [1340] [1341] [1342] [1343] [1344] [1345] [1346] [1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355] [1356] Underfull \vbox (badness 10000) has occurred while \output is active [1357] [1358] [1359] [1360] [1361] [1362] [1363] [1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] Underfull \hbox (badness 1852) in paragraph at lines 10572--10576 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1372] [1373] [1374] [1375]) (./parallel-pkg.tex [1376] Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z i4/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' [][] RNG[][][]: see [1377] [1378] [1379] [1380] [1381] Underfull \hbox (badness 1320) in paragraph at lines 301--304 []\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, So-laris and Win-dows. [1382] [1383] [1384] [1385] [1386] [1387] [1388] [1389] [1390] [1391] [1392] [1393] [1394] [1395] [1396] [1397] [1398] Underfull \hbox (badness 3386) in paragraph at lines 1394--1397 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/n/10 .Random.seed []\T1/ptm/m/n/10 when the [1399] [1400]) (./splines-pkg.tex Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1401] [1402] [1403] [1404] [1405] [1406] [1407] [1408] [1409] [1410] [1411] [1412] [1413] [1414] [1415] [1416]) (./stats-pkg.tex Chapter 10. [1417] [1418] [1419] [1420] [1421] [1422] [1423] [1424] [1425] [1426] [1427] [1428] [1429] [1430] Underfull \hbox (badness 1412) in paragraph at lines 901--903 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/n/10 l m []\T1/ptm/m/n/10 or []\T1/zi4/m/n/10 aov[]\T1/ptm/m/n/10 , or a for-mula for [1431] [1432] [1433] [1434] [1435] [1436] [1437] [1438] Underfull \hbox (badness 2503) in paragraph at lines 1383--1386 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 , [1439] [1440] [1441] [1442] [1443] [1444] [1445] [1446] [1447] [1448] [1449] [1450] [1451] [1452] [1453] [1454] [1455] [1456] [1457] [1458] [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] Underfull \hbox (badness 2503) in paragraph at lines 3546--3549 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 , [1473] [1474] Package amsmath Warning: Foreign command \atopwithdelims; (amsmath) \frac or \genfrac should be used instead (amsmath) on input line 3658. [1475] [1476] [1477] [1478] [1479] [1480] [1481] [1482] [1483] [1484] [1485] [1486] [1487] [1488] [1489] [1490] [1491] [1492] Underfull \hbox (badness 3989) in paragraph at lines 4803--4810 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1493] [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] Underfull \hbox (badness 2556) in paragraph at lines 5444--5447 []\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/n/10 "circular"[] \T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "fi lter"[]\T1/ptm/m/n/10 . For [1503] [1504] [1505] [1506] [1507] [1508] [1509] Underfull \hbox (badness 2503) in paragraph at lines 5858--5862 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 , [1510] [1511] [1512] [1513] [1514] [1515] [1516] [1517] [1518] [1519] [1520] [1521] [1522] Underfull \hbox (badness 7081) in paragraph at lines 6652--6655 []\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/n/10 "hclust" []\T1/ptm/m/n/10 ca n be con-verted to class []\T1/zi4/m/n/10 "dendrogram" []\T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 10000) in paragraph at lines 6656--6658 []\T1/zi4/m/n/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-g ram []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also [1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530] [1531] [1532] [1533] [1534] [1535] [1536] Underfull \hbox (badness 10000) in paragraph at lines 7531--7534 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][] \T1/zi4/m/n/10 dist[][][]()[]\T1/ptm/m/n/10 , the [1537] [1538] [1539] [1540] [1541] [1542] [1543] [1544] [1545] [1546] [1547] [1548] [1549] [1550] [1551] [1552] [1553] [1554] [1555] [1556] [1557] [1558] [1559] [1560] [1561] [1562] [1563] Underfull \hbox (badness 2626) in paragraph at lines 9226--9229 []\T1/ptm/m/n/10 Either []\T1/zi4/m/n/10 "convolution" []\T1/ptm/m/n/10 or []\T 1/zi4/m/n/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1564] Underfull \hbox (badness 2503) in paragraph at lines 9333--9337 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 , [1565] [1566] [1567] [1568] [1569] [1570] [1571] [1572] [1573] [1574] [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] Underfull \hbox (badness 4518) in paragraph at lines 10685--10690 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1586] [1587] [1588] [1589] [1590] Underfull \hbox (badness 2142) in paragraph at lines 11046--11049 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ [1591] Underfull \hbox (badness 1253) in paragraph at lines 11065--11068 []\T1/ptm/m/n/10 When []\T1/zi4/m/n/10 trace []\T1/ptm/m/n/10 is true, calls to [][][]\T1/zi4/m/n/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for each IWLS it-er-a-tion. Hence, [1592] Underfull \hbox (badness 1708) in paragraph at lines 11127--11131 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1593] [1594] [1595] [1596] [1597] [1598] Underfull \hbox (badness 1694) in paragraph at lines 11523--11526 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1599] [1600] [1601] [1602] [1603] [1604] [1605] [1606] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.hat}) has been already used, duplicate ignored \relax l.12004 \aliasA{hat}{influence.measures}{hat} [1607] [1608] Underfull \hbox (badness 1484) in paragraph at lines 12146--12148 []\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/n/10 hat() []\T1/ptm/m/n/10 ex-ists mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1609] [1610] [1611] [1612] [1613] [1614] [1615] [1616] [1617] [1618] Underfull \hbox (badness 10000) in paragraph at lines 12749--12751 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/n/10 solve.de fault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/n/10 SSinit = [1619] [1620] [1621] [1622] [1623] [1624] Underfull \hbox (badness 2894) in paragraph at lines 13085--13089 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1625] [1626] [1627] [1628] [1629] [1630] Underfull \hbox (badness 1496) in paragraph at lines 13508--13514 []\T1/ptm/m/n/10 Gunar Schröer and Di-et-rich Tren-kler (1995). Ex-act and Ran- dom-iza-tion Dis-tri-bu-tions of [1631] [1632] [1633] [1634] [1635] [1636] Underfull \hbox (badness 4518) in paragraph at lines 13906--13911 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1637] [1638] [1639] [1640] [1641] [1642] [1643] [1644] [1645] [1646] Underfull \hbox (badness 4518) in paragraph at lines 14566--14571 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1647] [1648] [1649] Underfull \hbox (badness 6412) in paragraph at lines 14704--14708 []\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/n/10 (surface = "inte rpolate", statistics = Underfull \hbox (badness 1199) in paragraph at lines 14711--14713 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if []\T1/zi4/m/n/10 family []\T1/ptm/m/n/10 is [1650] [1651] [1652] [1653] [1654] [1655] [1656] [1657] [1658] [1659] [1660] [1661] [1662] [1663] [1664] [1665] [1666] [1667] Underfull \hbox (badness 2503) in paragraph at lines 15787--15791 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 , [1668] [1669] [1670] [1671] [1672] [1673] [1674] [1675] Underfull \hbox (badness 10000) in paragraph at lines 16299--16305 []\T1/zi4/m/n/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/n/ 10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to Underfull \hbox (badness 1867) in paragraph at lines 16299--16305 []\T1/zi4/m/n/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 model.re sponse(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/n/10 model.offset []\T1/ ptm/m/n/10 sums any terms [1676] [1677] [1678] [1679] [1680] [1681] [1682] [1683] [1684] [1685] [1686] [1687] [1688] [1689] [1690] [1691] [1692] [1693] [1694] [1695] [1696] [1697] [1698] [1699] [1700] [1701] Underfull \hbox (badness 1158) in paragraph at lines 17954--17957 []\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/n/10 nls []\T1 /ptm/m/n/10 as the data ar-gu-ment. The ac- [1702] [1703] Underfull \vbox (badness 3803) has occurred while \output is active [1704] Underfull \vbox (badness 10000) has occurred while \output is active [1705] Underfull \vbox (badness 10000) has occurred while \output is active [1706] [1707] [1708] [1709] [1710] [1711] [1712] [1713] [1714] [1715] [1716] [1717] [1718] [1719] Underfull \hbox (badness 1377) in paragraph at lines 18988--18993 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 18993--18996 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 2343) in paragraph at lines 19006--19010 []\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i t is un-able to re-duce Underfull \hbox (badness 3471) in paragraph at lines 19006--19010 \T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/n/10 reltol * (abs(val) + reltol) []\T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 19014--19018 []\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/n/10 "BFGS"[]\T 1/ptm/m/n/10 , []\T1/zi4/m/n/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/n/1 0 "SANN" []\T1/ptm/m/n/10 meth-ods if [1720] [1721] [1722] Underfull \vbox (badness 10000) has occurred while \output is active [1723] Overfull \hbox (15.73795pt too wide) in paragraph at lines 19239--19239 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Overfull \hbox (3.75941pt too wide) in paragraph at lines 19242--19242 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1724] [1725] [1726] [1727] [1728] [1729] [1730] Underfull \hbox (badness 1337) in paragraph at lines 19701--19704 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1731] [1732] [1733] [1734] [1735] [1736] [1737] [1738] [1739] Underfull \hbox (badness 10000) in paragraph at lines 20172--20178 \T1/zi4/m/n/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 s distance", lty = cook.lty, col = cook.col, text.col [1740] [1741] [1742] [1743] [1744] Underfull \hbox (badness 1194) in paragraph at lines 20510--20513 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1745] [1746] [1747] [1748] [1749] [1750] [1751] Underfull \hbox (badness 2503) in paragraph at lines 20889--20892 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3919) in paragraph at lines 20916--20918 []\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/n/10 "Exact Poisson test" [ ]\T1/ptm/m/n/10 or []\T1/zi4/m/n/10 "Comparison of Poisson [1752] [1753] [1754] [1755] [1756] [1757] [1758] [1759] [1760] [1761] [1762] [1763] [1764] [1765] [1766] [1767] [1768] [1769] Underfull \hbox (badness 10000) in paragraph at lines 21995--22001 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/n/10 predict.ar[ ][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 predict.Arima[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/zi4/m/n/10 predict.arima0[][][][]\T1/ptm/m/n/10 , [1770] [1771] [1772] [1773] [1774] [1775] [1776] [1777] [1778] [1779] [1780] [1781] [1782] [1783] [1784] [1785] [1786] [1787] [1788] [1789] [1790] [1791] [1792] [1793] Underfull \hbox (badness 1337) in paragraph at lines 23393--23399 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1794] [1795] [1796] [1797] [1798] [1799] [1800] [1801] Underfull \hbox (badness 1436) in paragraph at lines 23883--23886 \T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t o 4.0.x, this had been set to []\T1/zi4/m/n/10 max(2, [1802] Underfull \hbox (badness 10000) in paragraph at lines 24024--24025 []\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . or g / wiki / Quantile # Estimating _ quantiles _ from _ a _ [1803] [1804] [1805] [1806] [1807] [1808] [1809] [1810] [1811] [1812] [1813] [1814] [1815] [1816] [1817] [1818] Underfull \hbox (badness 1824) in paragraph at lines 24996--25002 []\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 are f irst re-placed by al-ter- Underfull \hbox (badness 1033) in paragraph at lines 24996--25002 \T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/ m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where [1819] Underfull \hbox (badness 10000) in paragraph at lines 25017--25020 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/n/10 y = r unmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/n/10 y[j] = [1820] Underfull \vbox (badness 3803) has occurred while \output is active [1821] [1822] [1823] [1824] [1825] [1826] [1827] [1828] Underfull \hbox (badness 2165) in paragraph at lines 25599--25604 []\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/n/10 "selfStart" []\T1 /ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/n/10 SSasymp[][][][]\T1/p tm/m/n/10 , [][][]\T1/zi4/m/n/10 SSasympOff[][][][]\T1/ptm/m/n/10 , [1829] [1830] [1831] [1832] Underfull \hbox (badness 1867) in paragraph at lines 25809--25811 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 25825--25829 []\T1/ptm/m/n/10 where []\T1/zi4/m/n/10 NN <- [][]nobs[][][](object, use.fallba ck = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 PP <- [1833] [1834] [1835] [1836] [1837] [1838] [1839] [1840] [1841] [1842] [1843] [1844] [1845] [1846] [1847] [1848] [1849] [1850] [1851] [1852] [1853] [1854] [1855] [1856] [1857] Underfull \vbox (badness 10000) has occurred while \output is active [1858] [1859] Underfull \hbox (badness 3514) in paragraph at lines 27486--27491 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1860] [1861] [1862] [1863] Overfull \hbox (2.23795pt too wide) in paragraph at lines 27720--27720 [] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] Underfull \hbox (badness 3514) in paragraph at lines 27756--27762 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1864] Overfull \hbox (20.23795pt too wide) in paragraph at lines 27813--27813 []\T1/zi4/m/n/9 fmX1 <- nls(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), data = d atN, control = list(scaleOffset=1))[] Overfull \hbox (11.22874pt too wide) in paragraph at lines 27815--27815 [] \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=1 e-11, nDcentral=TRUE), trace=TRUE)[] [1865] [1866] [1867] Underfull \hbox (badness 3514) in paragraph at lines 27989--27994 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1868] [1869] Underfull \hbox (badness 3514) in paragraph at lines 28076--28081 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1870] Underfull \hbox (badness 3514) in paragraph at lines 28141--28146 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1871] [1872] Underfull \hbox (badness 3514) in paragraph at lines 28235--28240 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1873] [1874] Underfull \hbox (badness 6691) in paragraph at lines 28327--28332 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 x[]\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1875] [1876] [1877] [1878] [1879] [1880] [1881] [1882] Underfull \hbox (badness 4024) in paragraph at lines 28818--28821 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion , which [1883] [1884] [1885] [1886] [1887] [1888] [1889] [1890] [1891] [1892] Underfull \hbox (badness 5431) in paragraph at lines 29427--29429 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1893] [1894] [1895] Underfull \hbox (badness 5431) in paragraph at lines 29637--29640 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1896] [1897] [1898] [1899] [1900] [1901] Underfull \hbox (badness 1337) in paragraph at lines 29952--29956 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1902] [1903] [1904] [1905] [1906] Underfull \hbox (badness 1616) in paragraph at lines 30288--30291 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1907] [1908] [1909] [1910] [1911] [1912] [1913] [1914] [1915] [1916] [1917] [1918] [1919] [1920] [1921] [1922] [1923] [1924] [1925] [1926] Underfull \hbox (badness 3557) in paragraph at lines 31512--31516 []\T1/ptm/m/n/10 Setting []\T1/zi4/m/n/10 extendInt []\T1/ptm/m/n/10 to a non-[ ]\T1/zi4/m/n/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-rect []\T1/zi4/m/n/10 interval = [1927] [1928] [1929] Underfull \vbox (badness 10000) has occurred while \output is active [1930] [1931] [1932] Underfull \hbox (badness 1337) in paragraph at lines 31879--31883 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1933] [1934] [1935] [1936] [1937] [1938] [1939] [1940] [1941] Underfull \hbox (badness 1337) in paragraph at lines 32408--32412 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1942] [1943] [1944] Overfull \hbox (0.71648pt too wide) in paragraph at lines 32616--32616 []\T1/zi4/m/n/9 wilcox.test( 4:2, 3:1, paired=TRUE) # Warning: canno t compute exact p-value with ties[] [1945] [1946] [1947] Overfull \hbox (19.71954pt too wide) in paragraph at lines 32777--32777 [] \T1/zi4/m/n/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.eps = getOption("ts.eps"), ...)[] [1948] [1949] [1950] [1951] [1952]) (./stats4-pkg.tex Chapter 11. [1953] [1954] [1955] Underfull \vbox (badness 10000) has occurred while \output is active [1956] Underfull \vbox (badness 10000) has occurred while \output is active [1957] [1958] [1959] [1960] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.show.Rdas h.methods}) has been already used, duplicate ignored \relax l.503 ...Package \pkg{stats4}}{show.Rdash.methods} [1961] [1962] [1963]) (./tcltk-pkg.tex [1964] Chapter 12. [1965] [1966] [1967] [1968] [1969] [1970] [1971] Underfull \vbox (badness 10000) has occurred while \output is active [1972] Underfull \vbox (badness 10000) has occurred while \output is active [1973] Underfull \hbox (badness 1546) in paragraph at lines 671--678 []\T1/zi4/m/n/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-i ng any Tk or Tcl com-mand by sim-ply run-ning [1974] [1975] [1976] [1977] [1978] Underfull \vbox (badness 10000) has occurred while \output is active [1979] [1980] [1981] [1982] [1983] [1984] [1985] [1986]) (./tools-pkg.tex Chapter 13. [1987] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1988] Underfull \hbox (badness 3039) in paragraph at lines 167--170 []\T1/zi4/m/n/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing will be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1989] [1990] Underfull \hbox (badness 1308) in paragraph at lines 288--301 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 288--301 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/n/10 bi bentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 288--301 []\T1/zi4/m/n/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatIn Proceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatManual[]\T1/ptm/m/n/10 , [ ]\T1/zi4/m/n/10 formatMastersthesis[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 288--301 []\T1/zi4/m/n/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatPhdthesis[ ]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1/zi 4/m/n/10 formatTechreport []\T1/ptm/m/n/10 and [1991] [1992] Underfull \hbox (badness 3039) in paragraph at lines 392--394 []\T1/zi4/m/n/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gin e to use. Over-rides any [1993] Underfull \hbox (badness 1142) in paragraph at lines 464--468 \T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s ub-di-rec-tory [1994] [1995] [1996] [1997] [1998] [1999] [2000] [2001] [2002] [2003] [2004] [2005] [2006] Underfull \hbox (badness 1014) in paragraph at lines 1188--1190 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1194--1196 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous [2007] Underfull \hbox (badness 10000) in paragraph at lines 1231--1234 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1231--1234 []\T1/zi4/m/n/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and [ ]\T1/zi4/m/n/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 , [2008] [2009] [2010] [2011] [2012] Underfull \hbox (badness 10000) in paragraph at lines 1606--1609 []\T1/ptm/m/n/10 Internal func-tions []\T1/zi4/m/n/10 CRAN_aliases_db[]\T1/ptm/ m/n/10 , []\T1/zi4/m/n/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CR AN_current_db []\T1/ptm/m/n/10 and [2013] [2014] Underfull \hbox (badness 4096) in paragraph at lines 1725--1733 \T1/zi4/m/n/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string Underfull \hbox (badness 1082) in paragraph at lines 1735--1737 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or []\T1/zi4/m/n/10 NULL []\T1/ptm/m/n/10 for all known trees (see [2015] [2016] [2017] [2018] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.GSC}) has been already used, duplicate ignored \relax l.1937 \aliasA{GSC}{find\_gs\_cmd}{GSC} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSC MD}) has been already used, duplicate ignored \relax l.1938 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [2019] [2020] [2021] [2022] [2023] [2024] [2025] Underfull \hbox (badness 3386) in paragraph at lines 2412--2415 []\T1/ptm/m/n/10 The de-fault method of []\T1/zi4/m/n/10 as.Rconcordance []\T1/ ptm/m/n/10 searches for strings match-ing the pat-tern of [2026] [2027] Underfull \hbox (badness 4096) in paragraph at lines 2552--2560 \T1/zi4/m/n/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string [2028] [2029] [2030] [2031] [2032] [2033] [2034] [2035] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 3046. LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 3047. LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 3047. [2036] [2037] [2038] [2039] [2040] Underfull \hbox (badness 1424) in paragraph at lines 3358--3360 []\T1/zi4/m/it/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec -tor of links, as re-turned by [2041] [2042] [2043] [2044] [2045] [2046] [2047] [2048] [2049] [2050] [2051] Underfull \hbox (badness 10000) in paragraph at lines 4080--4082 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [2052] [2053] Underfull \hbox (badness 10000) in paragraph at lines 4219--4222 []\T1/ptm/m/n/10 Where sup-ported ([]\T1/zi4/m/it/10 texi2dvi []\T1/ptm/m/n/10 5.0 and later; []\T1/zi4/m/it/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op- tion [2054] [2055] [2056] [2057] [2058] [2059] Underfull \hbox (badness 1796) in paragraph at lines 4577--4582 []\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over [] \T1/zi4/m/it/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/it/10 type = = Underfull \hbox (badness 4699) in paragraph at lines 4627--4631 []\T1/ptm/m/n/10 a string, by de-fault empty, of op-tions to []\T1/zi4/m/it/10 msgmerge []\T1/ptm/m/n/10 in ad-di-tion to Underfull \hbox (badness 1946) in paragraph at lines 4627--4631 []\T1/zi4/m/it/10 "--update"[]\T1/ptm/m/n/10 . Since \T1/phv/m/n/10 R \T1/ptm/m /n/10 4.2.0, []\T1/zi4/m/it/10 "--no-wrap" []\T1/ptm/m/n/10 is used when called from [2060] Underfull \hbox (badness 1838) in paragraph at lines 4655--4661 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/it/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4655--4661 \T1/ptm/m/n/10 `\T1/zi4/m/it/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [2061] [2062] [2063] [2064] Underfull \hbox (badness 2197) in paragraph at lines 4936--4946 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z i4/m/it/10 available.packages[][][][]\T1/ptm/m/n/10 : [2065] Underfull \hbox (badness 1571) in paragraph at lines 5002--5006 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [2066] [2067] [2068] [2069]) (./utils-pkg.tex [2070] Chapter 14. [2071] Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/zi4/m/it/10 insertions[]\T1/ptm/m/n/10 ', [2072] [2073] [2074] [2075] [2076] [2077] [2078] [2079] [2080] [2081] Underfull \hbox (badness 10000) in paragraph at lines 729--735 []\T1/ptm/m/n/10 Functions []\T1/zi4/m/it/10 aspell_package_Rd_files[]\T1/ptm/m /n/10 , []\T1/zi4/m/it/10 aspell_package_vignettes[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 729--735 []\T1/zi4/m/it/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the [2082] [2083] [2084] Underfull \hbox (badness 3861) in paragraph at lines 934--939 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/it/10 "OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 "License"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/it/10 "License_is_FOSS"[]\T1/ptm/m/n/10 , [2085] [2086] [2087] Underfull \hbox (badness 10000) in paragraph at lines 1136--1138 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [2088] [2089] [2090] Underfull \vbox (badness 10000) has occurred while \output is active [2091] [2092] [2093] [2094] [2095] Underfull \hbox (badness 1371) in paragraph at lines 1664--1666 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to [2096] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 1734. [2097] [2098] [2099] [2100] [2101] [2102] [2103] [2104] [2105] [2106] [2107] Underfull \hbox (badness 2057) in paragraph at lines 2384--2386 []\T1/ptm/m/n/10 None for []\T1/zi4/m/it/10 chooseCRANmirror()[]\T1/ptm/m/n/10 , this func-tion is in-voked for its side ef-fect of up-dat-ing [2108] Underfull \hbox (badness 2150) in paragraph at lines 2459--2466 []\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/zi4/m/it/10 citation() []\T1 /ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print Underfull \hbox (badness 1400) in paragraph at lines 2459--2466 \T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I f a pack-age has more [2109] [2110] [2111] Underfull \vbox (badness 3803) has occurred while \output is active [2112] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.clipboard }) has been already used, duplicate ignored \relax l.2736 ... the Clipboard in MS Windows}{clipboard} [2113] [2114] [2115] [2116] [2117] [2118] [2119] [2120] [2121] [2122] [2123] [2124] [2125] [2126] [2127] [2128] [2129] [2130] [2131] [2132] [2133] Underfull \hbox (badness 6842) in paragraph at lines 4046--4051 []\T1/ptm/m/n/10 Support for method []\T1/zi4/m/it/10 "libcurl" []\T1/ptm/m/n/1 0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use [2134] Underfull \hbox (badness 1430) in paragraph at lines 4109--4113 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the []\T1/zi4/m/it/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the [2135] Underfull \hbox (badness 1184) in paragraph at lines 4180--4196 []\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/it/10 method = "libcurl"[]\T1/ptm /m/n/10 , the CA root cer-tifi-cates are pro-vided by the OS Underfull \hbox (badness 1019) in paragraph at lines 4180--4196 \T1/ptm/m/n/10 con-tain-ing `[]\T1/zi4/m/it/10 "Schannel"[]\T1/ptm/m/n/10 '. If it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-ment vari- Underfull \hbox (badness 1668) in paragraph at lines 4180--4196 \T1/ptm/m/n/10 able []\T1/zi4/m/it/10 CURL_CA_BUNDLE []\T1/ptm/m/n/10 must be s et to a path to a cer-tifi-cate bun-dle file, usu-ally named [2136] [2137] Underfull \hbox (badness 10000) in paragraph at lines 4330--4332 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/it/10 d ownload.file[][][] []\T1/ptm/m/n/10 and [2138] [2139] [2140] [2141] [2142] [2143] [2144] [2145] [2146] [2147] [2148] [2149] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.5101 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format.1} ) has been already used, duplicate ignored \relax l.5101 ...mat Unordered and Ordered Lists}{format} [2150] [2151] [2152] [2153] [2154] [2155] [2156] [2157] Underfull \hbox (badness 1622) in paragraph at lines 5624--5628 []\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing to ex-ter-nal GUIs or to the [2158] [2159] [2160] [2161] [2162] [2163] Underfull \hbox (badness 1448) in paragraph at lines 6003--6008 []\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject s, cor-re-spond-ing to call-ing [2164] [2165] [2166] [2167] [2168] [2169] [2170] [2171] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 6550. Underfull \hbox (badness 1371) in paragraph at lines 6554--6556 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to [2172] Underfull \hbox (badness 1502) in paragraph at lines 6643--6648 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 6643--6648 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [2173] [2174] [2175] Underfull \hbox (badness 10000) in paragraph at lines 6816--6825 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, [2176] Underfull \hbox (badness 2150) in paragraph at lines 6880--6883 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [2177] [2178] Underfull \hbox (badness 3118) in paragraph at lines 7019--7021 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [2179] [2180] [2181] Underfull \hbox (badness 1325) in paragraph at lines 7198--7202 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/it/10 available.pack ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able [2182] Underfull \hbox (badness 1424) in paragraph at lines 7290--7293 []\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p tm/m/it/10 not \T1/ptm/m/n/10 passed to [2183] Underfull \hbox (badness 3219) in paragraph at lines 7361--7368 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/i t/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 7361--7368 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 7361--7368 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by Underfull \hbox (badness 1596) in paragraph at lines 7361--7368 [][][]\T1/zi4/m/it/10 getOption[][][]("install.packages.compile.from.source")[] \T1/ptm/m/n/10 . []\T1/zi4/m/it/10 type = "both" []\T1/ptm/m/n/10 will be silen tly Underfull \hbox (badness 2932) in paragraph at lines 7369--7372 []\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/it/10 type = "source" []\T1/p tm/m/n/10 al-ways works pro-vided the pack-age con-tains no [2184] Underfull \hbox (badness 1024) in paragraph at lines 7499--7502 []\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/it/10 available. packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 , ] []\T1/ ptm/m/n/10 will [2185] Underfull \hbox (badness 10000) in paragraph at lines 7532--7537 [][][]\T1/zi4/m/it/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/i t/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 download. packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 installed.packages[][][] []\T1/ptm/m/n/10 , [2186] Underfull \hbox (badness 5133) in paragraph at lines 7591--7595 []\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each pack-age's [2187] [2188] [2189] [2190] [2191] [2192] [2193] [2194] [2195] [2196] [2197] Underfull \hbox (badness 10000) in paragraph at lines 8252--8254 []\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/it/10 methods(..)[]\T1/pt m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class [2198] [2199] [2200] [2201] [2202] [2203] [2204] [2205] [2206] [2207] [2208] [2209] Underfull \hbox (badness 2310) in paragraph at lines 9016--9021 []\T1/ptm/m/n/10 If a `\T1/zi4/m/it/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [2210] [2211] [2212] [2213] [2214] [2215] [2216] [2217] [2218] Underfull \hbox (badness 1248) in paragraph at lines 9582--9586 []\T1/zi4/m/it/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/ m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the [2219] Underfull \hbox (badness 1789) in paragraph at lines 9662--9664 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [2220] [2221] [2222] [2223] Underfull \hbox (badness 2600) in paragraph at lines 9886--9889 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the name of the help topic; de-faults to [2224] [2225] [2226] [2227] [2228] [2229] [2230] [2231] [2232] Underfull \hbox (badness 1097) in paragraph at lines 10513--10516 []\T1/ptm/m/n/10 The name []\T1/zi4/m/it/10 "clipboard" []\T1/ptm/m/n/10 may al so be used on Win-dows, in which case [2233] [2234] Underfull \hbox (badness 3000) in paragraph at lines 10649--10654 [][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m /n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/ it/10 read.table[][][][]\T1/ptm/m/n/10 ; [2235] [2236] [2237] [2238] [2239] [2240] [2241] [2242] [2243] Underfull \hbox (badness 2134) in paragraph at lines 11243--11248 [][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m /n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/ it/10 write.table[][][][]\T1/ptm/m/n/10 ; [2244] Underfull \hbox (badness 10000) in paragraph at lines 11299--11304 []\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for Underfull \hbox (badness 10000) in paragraph at lines 11299--11304 []\T1/zi4/m/it/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 HKEY_C LASSES_ROOT[]\T1/ptm/m/n/10 . []\T1/zi4/m/it/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/ 10 , [2245] [2246] [2247] [2248] [2249] [2250] [2251] [2252] Underfull \hbox (badness 2469) in paragraph at lines 11797--11801 []\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia , The Free En-cy-clo-pe-dia. Underfull \hbox (badness 3428) in paragraph at lines 11797--11801 [][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / w / index . php ? title = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . 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(rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information) pdfTeX warning (dest): name{Rfn.write.matrix} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.lmList} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.knitr} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.de.restore} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.de.setup} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.de.ncols} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.mathjaxr} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.dgTMatrix} has been referenced but does not exi st, replaced by a fixed one 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This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./fullrefman.tex LaTeX2e <2023-11-01> L3 programming layer <2023-11-09> (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2023/05/17 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (../../share/texmf/tex/latex/Rd.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/bm.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty) (/usr/share/texlive/texmf-dist/tex/latex/jknapltx/mathrsfs.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/zi4.sty `inconsolata-zi4' v1.12, 2019/05/17 Text macros for Inconsolata (msharpe) (/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/keyval.tex))))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def) (/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty))) (/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty)))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg))) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty) Writing index file fullrefman.idx (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./fullrefman.aux) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (./fullrefman.out) (./fullrefman.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf-dist/fonts/enc/dvips /base/8r.enc}] (./fullrefman.toc (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/t1zi4.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) (/usr/share/texlive/texmf-dist/tex/latex/jknapltx/ursfs.fd) [1{/usr/share/texli ve/texmf-dist/fonts/enc/dvips/inconsolata/i4-t1-0.enc}] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30]) [31] [32] (./base-pkg.tex Chapter 1. [1] [2] Underfull \hbox (badness 6252) in paragraph at lines 143--151 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/zi4/m/n/10 x [ ]\T1/ptm/m/n/10 such that []\T1/zi4/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/ptm/m/n/10 equals []\T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits []\T 1/ptm/m/n/10 if []\T1/zi4/m/n/10 double.base Underfull \hbox (badness 10000) in paragraph at lines 143--151 []\T1/ptm/m/n/10 is 2 or []\T1/zi4/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0 ; oth-er-wise, it is []\T1/zi4/m/n/10 (double.base Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/z i4/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . As Underfull \hbox (badness 4995) in paragraph at lines 143--151 []\T1/zi4/m/n/10 double.neg.ulp.digits []\T1/ptm/m/n/10 is bounded be-low by [] \T1/zi4/m/n/10 -(double.digits + 3)[]\T1/ptm/m/n/10 , [3] [4] [5] Underfull \hbox (badness 1178) in paragraph at lines 333--336 []\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][][]\T1/zi4/m/ n/10 options[][][]("pkgType")[]\T1/ptm/m/n/10 . Val-ues [6] [7] [8] [9] Underfull \hbox (badness 2556) in paragraph at lines 571--577 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/zi4/m/n/10 insertions[]\T1/ptm/m/n/10 ', [10] [11] [12] (/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [13{/usr/share/texlive/texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] (/usr/share/texlive/texmf-dist/tex/latex/base/t1cmtt.fd) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [24] [25] Underfull \hbox (badness 10000) in paragraph at lines 1611--1617 [26] [27] [28] [29] [30] [31] [32] Underfull \hbox (badness 1242) in paragraph at lines 2023--2026 []\T1/ptm/m/n/10 Since \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.3.0, the \T1/ptm/m/it/ 10 de-fault \T1/ptm/m/n/10 method will call []\T1/zi4/m/n/10 as.data.frame.vect or() []\T1/ptm/m/n/10 for atomic (as by Underfull \hbox (badness 10000) in paragraph at lines 2027--2031 []\T1/ptm/m/n/10 Direct calls to []\T1/zi4/m/n/10 as.data.frame.() []\T1 /ptm/m/n/10 are still pos-si-ble (base pack-age!), for Underfull \hbox (badness 5490) in paragraph at lines 2027--2031 \T1/ptm/m/n/10 12 atomic base classes, but will dep-re-cated (al-ready vis-i-bl y by set-ting en-vi-ron-ment Underfull \hbox (badness 10000) in paragraph at lines 2027--2031 \T1/ptm/m/n/10 vari-able []\T1/zi4/m/n/10 _R_CHECK_AS_DATA_FRAME_EXPLICIT_METHO D_ []\T1/ptm/m/n/10 to non-empty) where call-ing [33] [34] [35] Overfull \hbox (26.27782pt too wide) in paragraph at lines 2267--2267 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] Underfull \hbox (badness 1721) in paragraph at lines 2933--2937 [][][]\T1/zi4/m/n/10 assign[][][] []\T1/ptm/m/n/10 (and its in-verse [][][]\T1/ zi4/m/n/10 get[][][][]\T1/ptm/m/n/10 ), for ``sub-assign-ment'' such as []\T1/z i4/m/n/10 x[i] <- v[]\T1/ptm/m/n/10 , see [][][]\T1/zi4/m/n/10 [<-[][][][]\T1/p tm/m/n/10 ; fur-ther, [47] [48] [49] [50] [51] [52] [53] Underfull \hbox (badness 2538) in paragraph at lines 3413--3416 []\T1/zi4/m/n/10 unCfillPOSIXlt(x) []\T1/ptm/m/n/10 is a fast [][]prim-i-tive[] [][] ver-sion of []\T1/zi4/m/n/10 balancePOSIXlt(x, fill.only=TRUE, [54] [55] [56] [57] [58] Underfull \vbox (badness 10000) has occurred while \output is active [59] [60] [61] [62] [63] [64] [65] Underfull \hbox (badness 10000) in paragraph at lines 4209--4211 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] Underfull \hbox (badness 2521) in paragraph at lines 5506--5508 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [87] [88] [89] [90] [91] [92] [93] [94] [95] [96] [97] [98] [99] [100] [101] [102] [103] [104] [105] Overfull \hbox (5.27168pt too wide) in paragraph at lines 6771--6771 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [106] [107] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] [118] Underfull \hbox (badness 1303) in paragraph at lines 7664--7671 []\T1/zi4/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/zi4/m/n/10 descri ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/zi4/m/n/10 "r" []\T1/ptm/m/n /10 only. This reads the Underfull \hbox (badness 2261) in paragraph at lines 7675--7680 \T1/zi4/m/n/10 / / github . com / astrand / xclip$[][]\T1/ptm/m/n/10 ) or []\T1 /zi4/m/n/10 xsel []\T1/ptm/m/n/10 ([][]$\T1/zi4/m/n/10 https : / / www . vergen et . net / ~conrad / software / [119] [120] Underfull \vbox (badness 10000) has occurred while \output is active [121] Underfull \vbox (badness 10000) has occurred while \output is active [122] [123] [124] [125] [126] [127] [128] [129] Underfull \hbox (badness 2096) in paragraph at lines 8354--8358 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [130] [131] Underfull \hbox (badness 2351) in paragraph at lines 8469--8472 [][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac -cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t able[][][][]\T1/ptm/m/n/10 , [132] [133] [134] [135] [136] Underfull \hbox (badness 4479) in paragraph at lines 8786--8797 [][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names), [137] [138] [139] [140] [141] [142] Underfull \hbox (badness 1629) in paragraph at lines 9216--9228 []\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a re ig-nored, and real times Underfull \hbox (badness 2875) in paragraph at lines 9216--9228 []\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19 69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19 69-12-31 [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] Underfull \hbox (badness 1178) in paragraph at lines 10064--10068 []\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names (see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de- [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188] [189] [190] [191] Underfull \hbox (badness 2744) in paragraph at lines 12398--12400 []\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma y lead to con-fu-sion (see [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223] Underfull \hbox (badness 2253) in paragraph at lines 14602--14604 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [224] Underfull \hbox (badness 1490) in paragraph at lines 14637--14640 []\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m a-tion is given about the [225] Underfull \hbox (badness 1565) in paragraph at lines 14719--14723 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym- bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][] []\T1/ptm/m/n/10 , and [226] Underfull \hbox (badness 4927) in paragraph at lines 14770--14772 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4 /m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with []\T1/zi4/m/n/10 fsep = [227] Underfull \hbox (badness 3148) in paragraph at lines 14872--14877 [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.fi les[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 help[][][][]\T1/ptm/m/n/10 ; [ ][][]\T1/zi4/m/n/10 RShowDoc[][][] []\T1/ptm/m/n/10 call []\T1/zi4/m/n/10 file. show() []\T1/ptm/m/n/10 for []\T1/zi4/m/n/10 type = "text"[]\T1/ptm/m/n/10 . Co n-sider [228] Underfull \hbox (badness 1466) in paragraph at lines 14919--14922 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T 1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and [229] [230] Underfull \hbox (badness 10000) in paragraph at lines 15050--15054 [][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1 /ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 15061--15064 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [231] [232] [233] [234] [235] Underfull \hbox (badness 3965) in paragraph at lines 15358--15362 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [236] [237] [238] [239] [240] [241] [242] [243] [244] [245] [246] [247] Underfull \hbox (badness 4429) in paragraph at lines 16147--16150 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] []\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for [248] [249] Underfull \hbox (badness 10000) in paragraph at lines 16253--16255 []\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , which calls []\T1/zi4/m/n/10 .format.zeros(*, [250] Underfull \hbox (badness 2035) in paragraph at lines 16326--16330 []\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1 0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0: for use within [251] Underfull \vbox (badness 10000) has occurred while \output is active [252] [253] [254] [255] [256] [257] [258] [259] [260] Underfull \hbox (badness 2452) in paragraph at lines 16939--16943 []\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron -ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 16939--16943 \T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_ GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and [261] [262] Underfull \hbox (badness 1092) in paragraph at lines 17112--17117 [][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t er the DLL has been loaded us-ing [263] [264] [265] [266] Underfull \hbox (badness 6741) in paragraph at lines 17365--17369 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [ ]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt m/m/n/10 , [267] [268] [269] [270] [271] [272] [273] [274] [275] [276] [277] Underfull \vbox (badness 10000) has occurred while \output is active [278] Underfull \vbox (badness 10000) has occurred while \output is active [279] [280] [281] [282] [283] [284] [285] [286] [287] [288] Underfull \hbox (badness 1769) in paragraph at lines 18861--18864 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [289] [290] [291] [292] [293] Underfull \hbox (badness 10000) in paragraph at lines 19156--19158 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww w . unicode . org / reports / tr35 / Underfull \hbox (badness 2088) in paragraph at lines 19162--19171 []\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T 1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu / [294] [295] [296] [297] [298] [299] [300] [301] [302] Underfull \hbox (badness 1442) in paragraph at lines 19770--19772 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see [303] [304] [305] [306] [307] Underfull \hbox (badness 10000) in paragraph at lines 20103--20109 [308] [309] [310] [311] Underfull \hbox (badness 1248) in paragraph at lines 20352--20355 []\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\ T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 " complex"[]\T1/ptm/m/n/10 , [312] [313] [314] [315] [316] Underfull \hbox (badness 4739) in paragraph at lines 20615--20617 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [317] [318] [319] [320] [321] [322] [323] [324] [325] [326] [327] [328] [329] [330] [331] [332] [333] Underfull \hbox (badness 2469) in paragraph at lines 21699--21704 []\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T 1/ptm/m/n/10 and [334] [335] Underfull \hbox (badness 1675) in paragraph at lines 21786--21795 []\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3189) in paragraph at lines 21796--21809 []\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini- tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set or empty, the Underfull \hbox (badness 10000) in paragraph at lines 21844--21847 []\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid- Underfull \hbox (badness 4752) in paragraph at lines 21844--21847 \T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may be opened by [336] [337] Underfull \hbox (badness 1014) in paragraph at lines 21978--21983 []\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if [338] [339] [340] [341] [342] [343] [344] [345] [346] [347] [348] [349] [350] Underfull \hbox (badness 1264) in paragraph at lines 22825--22833 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [351] Underfull \hbox (badness 4441) in paragraph at lines 22859--22862 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/ ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 , [352] [353] [354] [355] [356] [357] [358] [359] [360] [361] [362] [363] Underfull \hbox (badness 5231) in paragraph at lines 23669--23671 []\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm /m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) == [364] [365] [366] [367] [368] [369] [370] [371] [372] [373] [374] [375] [376] [377] [378] [379] [380] [381] Underfull \hbox (badness 10000) in paragraph at lines 24762--24768 [][]$\T1/zi4/m/n/10 https : / / zlib . net/$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m /n/10 https : / / en . wikipedia . org / wiki / Gzip$[][]\T1/ptm/m/n/10 , [][]$ \T1/zi4/m/n/10 http : / / www . bzip . org/$[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 24762--24768 [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm /m/n/10 , [][]$\T1/zi4/m/n/10 https : / / tukaani . org / xz/$[][] \T1/ptm/m/n/ 10 and [][]$\T1/zi4/m/n/10 https : [382] [383] [384] [385] [386] [387] [388] [389] Underfull \hbox (badness 2790) in paragraph at lines 25271--25274 []\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes -sages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 25271--25274 []\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti ll mes-sages, so can be sup-pressed by [390] [391] [392] [393] [394] Underfull \hbox (badness 1194) in paragraph at lines 25594--25597 []\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1 0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/ m/n/10 . It calls [395] [396] [397] Underfull \hbox (badness 2368) in paragraph at lines 25801--25807 []\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n /10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r e-spond-ing list, i.e., [398] [399] [400] [401] [402] [403] Underfull \hbox (badness 10000) in paragraph at lines 26191--26194 []\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by [404] [405] [406] [407] [408] [409] [410] [411] [412] [413] Underfull \hbox (badness 10000) in paragraph at lines 26817--26819 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in% [414] [415] [416] [417] [418] [419] [420] Underfull \hbox (badness 2443) in paragraph at lines 27305--27313 \T1/ptm/m/n/10 suit-able char-ac-ter vec-tors as above, or nu-meric ver-sion ob -jects. For [421] [422] [423] [424] [425] [426] Underfull \hbox (badness 1881) in paragraph at lines 27723--27726 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are [427] Underfull \hbox (badness 6220) in paragraph at lines 27748--27750 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [428] Underfull \hbox (badness 2142) in paragraph at lines 27889--27893 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able [429] Underfull \hbox (badness 1968) in paragraph at lines 27946--27951 []\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\ T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able [430] [431] [432] Underfull \hbox (badness 10000) in paragraph at lines 28240--28246 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/ m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 28240--28246 \T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[] \T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 28240--28246 \T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de "[]\T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 10000) in paragraph at lines 28253--28256 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[ ][][] []\T1/ptm/m/n/10 (and hence[][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/pt m/m/n/10 and [433] Underfull \hbox (badness 2689) in paragraph at lines 28279--28281 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see Underfull \hbox (badness 10000) in paragraph at lines 28321--28326 []\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/ m/n/10 (and in-di-rectly Underfull \hbox (badness 2529) in paragraph at lines 28327--28338 \T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm /m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si- Underfull \hbox (badness 2512) in paragraph at lines 28327--28338 \T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u se and Underfull \hbox (badness 7203) in paragraph at lines 28339--28342 []\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T 1/ptm/m/n/10 and [434] [435] [436] [437] [438] [439] Underfull \hbox (badness 10000) in paragraph at lines 28756--28760 \T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU N(X[arrayindex.x], Y[arrayindex.y], [440] [441] [442] Underfull \hbox (badness 10000) in paragraph at lines 28903--28906 []\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex t=s, [443] Underfull \hbox (badness 7925) in paragraph at lines 28984--28988 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [ ]\T1/ptm/m/n/10 cor-re-sponds to Underfull \hbox (badness 1253) in paragraph at lines 28984--28988 [][][]\T1/zi4/m/n/10 parse[][][](text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 , which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) and [][][]\T1/zi4/m/n/10 class[][][] Underfull \hbox (badness 2521) in paragraph at lines 28989--28998 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt m/m/n/10 cor-re-sponds to [][][]\T1/zi4/m/n/10 parse[][][](text = s, [444] [445] [446] [447] [448] [449] [450] [451] [452] [453] [454] [455] [456] [457] [458] [459] Underfull \hbox (badness 2726) in paragraph at lines 30001--30004 []\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed out-put, see [460] [461] [462] [463] [464] [465] [466] [467] [468] [469] [470] [471] [472] [473] [474] [475] [476] [477] [478] [479] [480] [481] [482] [483] [484] [485] [486] Underfull \hbox (badness 1533) in paragraph at lines 31798--31801 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [487] [488] [489] Underfull \hbox (badness 1163) in paragraph at lines 31961--31972 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [490] [491] [492] [493] [494] [495] [496] Underfull \vbox (badness 3803) has occurred while \output is active [497] [498] [499] [500] [501] [502] [503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514] [515] Underfull \hbox (badness 10000) in paragraph at lines 33627--33631 []\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 33627--33631 []\T1/zi4/m/n/10 "(?[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions of the matches are also re-turned by name. Underfull \hbox (badness 3557) in paragraph at lines 33648--33650 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919799 / Underfull \hbox (badness 1122) in paragraph at lines 33651--33655 []\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi 4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m /n/10 https : / / www . pcre . org / [516] [517] Underfull \vbox (badness 10000) has occurred while \output is active [518] [519] [520] [521] [522] [523] [524] [525] Underfull \hbox (badness 1655) in paragraph at lines 34252--34254 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1 /ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for [526] [527] [528] [529] [530] [531] [532] [533] [534] [535] [536] [537] [538] [539] [540] [541] [542] [543] [544] Underfull \hbox (badness 2261) in paragraph at lines 35458--35463 []\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 1, it ap-plies to all fields; oth-er-wise, if [545] [546] [547] [548] [549] [550] [551] [552] [553] [554] [555] [556] [557] [558] [559] [560] Underfull \hbox (badness 3668) in paragraph at lines 36493--36497 []\T1/zi4/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in- te-ger con-nec-tion de-scrip-tors for use with [561] Underfull \hbox (badness 10000) in paragraph at lines 36584--36595 \T1/zi4/m/n/10 / / learn . microsoft . com / en-[]us / cpp / c-[]language / par sing-[]c-[]command-[]line-[]arguments ? [562] [563] [564] [565] [566] [567] [568] [569] [570] [571] [572] [573] [574] [575] [576] [577] [578] [579] [580] [581] [582] [583] [584] [585] Underfull \hbox (badness 10000) in paragraph at lines 38129--38131 [][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919 799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for [586] Underfull \vbox (badness 3803) has occurred while \output is active [587] [588] [589] [590] [591] [592] Underfull \hbox (badness 2913) in paragraph at lines 38549--38553 \T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur- rently un-der eval-u-a-tion, ex-ceeds the limit set by [593] [594] [595] Underfull \hbox (badness 1072) in paragraph at lines 38795--38799 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 38800--38804 []\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/ m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi 4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ', [596] Underfull \hbox (badness 10000) in paragraph at lines 38840--38846 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 38840--38846 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 38840--38846 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in Underfull \hbox (badness 3009) in paragraph at lines 38855--38862 []\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt m/m/n/10 ' which is read Underfull \hbox (badness 1038) in paragraph at lines 38855--38862 \T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron- ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 38855--38862 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 38855--38862 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [597] [598] [599] Underfull \hbox (badness 2644) in paragraph at lines 39090--39094 []\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T 1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an [600] [601] [602] Underfull \hbox (badness 1142) in paragraph at lines 39258--39264 []\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the []\T1/zi4/m/n/10 fo rmat []\T1/ptm/m/n/10 meth-ods is []\T1/zi4/m/n/10 "%Y-%m-%d [603] [604] [605] [606] [607] [608] [609] [610] [611] [612] [613] [614] [615] [616] [617] [618] [619] [620] [621] [622] [623] Underfull \hbox (badness 1158) in paragraph at lines 40617--40619 []\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil e.type) []\T1/ptm/m/n/10 for the de-fault [624] [625] [626] [627] [628] [629] [630] [631] [632] [633] Underfull \hbox (badness 1137) in paragraph at lines 41212--41218 []\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild -cards in file paths. For pre-cise de-tails Underfull \hbox (badness 4967) in paragraph at lines 41231--41236 []\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10 this may need to be matched ex-plic-itly: for ex-am-ple [634] [635] Underfull \hbox (badness 1616) in paragraph at lines 41351--41356 []\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al ikes, pro-vided only the POSIX op-tions [636] [637] [638] [639] Underfull \vbox (badness 3803) has occurred while \output is active [640] [641] [642] [643] [644] Underfull \hbox (badness 1472) in paragraph at lines 41898--41901 []\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions keep their source in-clud-ing com-ments, see [645] [646] [647] [648] [649] [650] [651] [652] [653] [654] [655] [656] [657] Underfull \vbox (badness 3803) has occurred while \output is active [658] Underfull \hbox (badness 10000) in paragraph at lines 42824--42828 []\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/n/10 bin []\T1/ptm/m/n/10 can have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4/ m/n/10 length(bin) > [659] [660] [661] [662] Underfull \hbox (badness 10000) in paragraph at lines 43083--43086 [][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [ ][]$https : / / developer . r-[]project . org / [663] [664] [665] Underfull \hbox (badness 10000) in paragraph at lines 43267--43271 [][][]\T1/zi4/m/n/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/ 10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 taskCallback Manager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer . [666] [667] [668] [669] [670] [671] [672] [673] [674] [675] Underfull \hbox (badness 10000) in paragraph at lines 43916--43919 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / data . iana . org / time-[ ]zones / [676] [677] [678] [679] [680] Underfull \vbox (badness 3803) has occurred while \output is active [681] [682] [683] [684] [685] [686] [687] [688] Underfull \hbox (badness 1990) in paragraph at lines 44837--44845 []\T1/zi4/m/n/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any er-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 44837--44845 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ][]\T1/zi4/m/n/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less [689] [690] [691] [692] [693] [694] [695] [696] [697] [698] [699] [700] [701] [702] [703] [704] Underfull \hbox (badness 2452) in paragraph at lines 45834--45840 [][][]\T1/zi4/m/n/10 file[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.acc ess[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.append[][][][]\T1/ptm/m/n /10 , [][][]\T1/zi4/m/n/10 file.copy[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/ 10 file.create[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.exists[][][][] \T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [705] [706] [707] [708] [709] [710] Underfull \hbox (badness 3668) in paragraph at lines 46232--46234 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di- ately, even if [711] [712] Underfull \hbox (badness 2401) in paragraph at lines 46362--46366 []\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/n/10 options[][][]("w arn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [713] [714] Underfull \hbox (badness 3492) in paragraph at lines 46486--46488 []\T1/zi4/m/n/10 weekdays []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 months []\T1/pt m/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e., [715] Underfull \hbox (badness 2111) in paragraph at lines 46572--46577 \T1/ptm/m/n/10 If [][][]\T1/zi4/m/n/10 names[][][](.dimnames) []\T1/ptm/m/n/10 is not empty, these are used as col-umn names. [716] [717] [718] [719] Underfull \hbox (badness 4001) in paragraph at lines 46818--46820 []\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/n/10 https : / / developer . [720] [721] [722] [723] [724] [725] Underfull \hbox (badness 5417) in paragraph at lines 47185--47189 []\T1/zi4/m/n/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-ren tly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [726] Underfull \hbox (badness 10000) in paragraph at lines 47246--47250 []\T1/zi4/m/n/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-da rd' reg-exps, in-clud-ing el-e-ments named [727]) (./compiler-pkg.tex [728] Chapter 2. [729] [730] [731] [732]) (./datasets-pkg.tex Chapter 3. [733] [734] [735] [736] [737] [738] [739] [740] [741] [742] [743] [744] [745] [746] [747] [748] [749] Underfull \hbox (badness 1097) in paragraph at lines 1037--1041 []\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th e iden-ti-fi-ca-tion of crim-i-nals. [750] [751] [752] [753] [754] [755] [756] [757] [758] [759] [760] [761] [762] [763] [764] [765] [766] [767] [768] [769] [770] [771] [772] [773] [774] [775] [776] [777] [778] [779] [780] [781] [782] [783] [784] [785] [786] [787] [788] [789] [790] [791] Overfull \hbox (2.27475pt too wide) in paragraph at lines 3508--3508 []\T1/zi4/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis t.html#Geographic%20Centers[] [792] [793] [794] [795] [796] [797] [798] [799] [800] [801] [802] [803] [804] [805] [806] [807] [808] [809] [810] [811] [812] [813] [814] [815]) (./grDevices-pkg.tex [816] Chapter 4. [817] [818] [819] [820] [821] Underfull \hbox (badness 2221) in paragraph at lines 282--286 []\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/n/10 c(mi, ma, n.)[]\ T1/ptm/m/n/10 , with iden-ti-cal mean-ing to Underfull \hbox (badness 10000) in paragraph at lines 298--303 []\T1/ptm/m/n/10 Apart from that, [][][]\T1/zi4/m/n/10 axisTicks[][][]() []\T1/ ptm/m/n/10 just calls the C func-tion []\T1/zi4/m/n/10 CreateAtVector() []\T1/p tm/m/n/10 in Underfull \hbox (badness 1852) in paragraph at lines 298--303 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 /src/main/plot.c\T1/ptm/m/n/10 ' which is also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack-age func-t ion [822] [823] [824] [825] [826] [827] [828] [829] [830] [831] Underfull \hbox (badness 1424) in paragraph at lines 899--901 [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) an d []\T1/zi4/m/n/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also be spec-i-fied as [832] [833] [834] [835] Underfull \hbox (badness 5175) in paragraph at lines 1193--1195 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [836] [837] Underfull \hbox (badness 2512) in paragraph at lines 1312--1314 []\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/n/10 https : / / web . arc hive . org / web / 20190613001950 / http : / / efg2 . com / [838] [839] [840] [841] [842] Underfull \hbox (badness 1490) in paragraph at lines 1612--1617 \T1/ptm/m/n/10 by [][][]\T1/zi4/m/n/10 rasterImage[][][] []\T1/ptm/m/n/10 and [ ][][]\T1/zi4/m/n/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues []\T 1/zi4/m/n/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "yes" []\T1/ptm/m/n/10 and Underfull \hbox (badness 3302) in paragraph at lines 1625--1629 []\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo re of [843] [844] [845] [846] [847] [848] [849] Underfull \hbox (badness 1325) in paragraph at lines 2040--2050 []\T1/zi4/m/n/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "pngmono"[]\T1/ptm/ m/n/10 , []\T1/zi4/m/n/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "pngalph a"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/1 0 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "bmp32b"[]\T1/ptm/m/n/10 , [850] Underfull \hbox (badness 10000) in paragraph at lines 2152--2154 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [851] [852] [853] Underfull \hbox (badness 6758) in paragraph at lines 2338--2341 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [854] [855] [856] [857] [858] [859] [860] [861] [862] [863] [864] [865] Underfull \hbox (badness 10000) in paragraph at lines 3089--3090 [866] [867] [868] [869] [870] [871] [872] [873] [874] [875] [876] [877] Underfull \vbox (badness 3803) has occurred while \output is active [878] [879] [880] [881] Underfull \vbox (badness 10000) has occurred while \output is active [882] Underfull \hbox (badness 10000) in paragraph at lines 4165--4168 []\T1/ptm/m/n/10 For use with []\T1/zi4/m/n/10 onefile = FALSE []\T1/ptm/m/n/10 give a C in-te-ger for-mat such as [883] [884] [885] [886] [887] [888] [889] [890] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.symbol}) has been already used, duplicate ignored \relax l.4681 \aliasA{symbol}{plotmath}{symbol} [891] [892] [893] [894] [895] [896] Underfull \hbox (badness 1584) in paragraph at lines 5067--5069 []\T1/ptm/m/n/10 For type []\T1/zi4/m/n/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1/ zi4/m/n/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See Underfull \hbox (badness 1067) in paragraph at lines 5071--5078 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [897] [898] [899] [900] [901] Underfull \hbox (badness 1377) in paragraph at lines 5387--5392 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [902] Underfull \hbox (badness 1418) in paragraph at lines 5463--5470 \T1/ptm/m/n/10 it is one of []\T1/zi4/m/n/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\ T1/zi4/m/n/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Courier"[]\T1/ptm/m /n/10 , []\T1/zi4/m/n/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Helvet ica-Narrow"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 1755) in paragraph at lines 5481--5483 []\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East Asian lan-guages -- see [903] Underfull \hbox (badness 1377) in paragraph at lines 5592--5597 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [ ]\T1/zi4/m/n/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and [904] Underfull \hbox (badness 7344) in paragraph at lines 5661--5663 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [905] [906] [907] Underfull \hbox (badness 2035) in paragraph at lines 5799--5808 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5799--5808 \T1/ptm/m/n/10 vided: []\T1/zi4/m/n/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi4 /m/n/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Courier"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Helvetica-Na rrow"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5799--5808 []\T1/zi4/m/n/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "Pal atino" []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 "Times"[]\T1/ptm/m/n/10 ; []\T1/zi 4/m/n/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "URWBookman"[]\T1/ptm/m /n/10 , [908] Underfull \hbox (badness 10000) in paragraph at lines 5867--5869 []\T1/zi4/m/n/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/z i4/m/n/10 https : / / ftp . gnu . org / pub / non-[]gnu / [909] [910] Underfull \hbox (badness 1546) in paragraph at lines 6012--6020 []\T1/ptm/m/n/10 arguments []\T1/zi4/m/n/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi4 /m/n/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 title[]\T1/ptm/m/n/10 , []\T1 /zi4/m/n/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 encoding[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 fg[]\T1/ptm/m/n/10 , [] \T1/zi4/m/n/10 width[]\T1/ptm/m/n/10 , [911] [912] [913] [914] [915] [916] [917] [918] [919] Underfull \hbox (badness 10000) in paragraph at lines 6551--6554 []\T1/zi4/m/n/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space (r ed/green/blue) into HSV space [920] Underfull \vbox (badness 3803) has occurred while \output is active [921] [922] [923] Overfull \hbox (9.73488pt too wide) in paragraph at lines 6788--6788 []\T1/zi4/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro blem (without \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 continuous=TRUE\TS1/zi4/m/n/9 '\T1/ zi4/m/n/9 ):[] [924] [925] [926] [927] [928] [929] [930] [931] [932] Underfull \hbox (badness 1189) in paragraph at lines 7414--7416 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [933] [934] Underfull \hbox (badness 10000) in paragraph at lines 7519--7521 []\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for CJ K lan-guages and [935] [936] [937] [938] [939] Underfull \hbox (badness 3780) in paragraph at lines 7833--7839 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of []\T1/zi4/m/n /10 "AvantGarde"[]\T1/ptm/m/n/10 , [940] [941] [942] [943] [944]) (./graphics-pkg.tex Chapter 5. [945] [946] [947] [948] [949] [950] [951] [952] [953] [954] [955] Underfull \vbox (badness 3803) has occurred while \output is active [956] [957] [958] [959] [960] [961] Overfull \hbox (12.71341pt too wide) in paragraph at lines 1034--1034 [] \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = " # {passengers}", legend.text = TRUE)[] [962] [963] [964] [965] [966] [967] Underfull \hbox (badness 4634) in paragraph at lines 1408--1411 [][][]\T1/zi4/m/n/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready work s nowa-days with data.frames; [][][]\T1/zi4/m/n/10 boxplot.formula[][][][]\T1/p tm/m/n/10 , [968] [969] [970] [971] [972] [973] [974] [975] [976] [977] [978] [979] [980] [981] [982] [983] [984] Underfull \hbox (badness 1728) in paragraph at lines 2388--2390 []\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/n/10 "n" []\T1/ptm/m/n/10 to sup-press and see also [985] Underfull \hbox (badness 1009) in paragraph at lines 2481--2488 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [986] [987] [988] [989] [990] [991] [992] [993] [994] [995] [996] [997] [998] [999] [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] Underfull \vbox (badness 10000) has occurred while \output is active [1009] Underfull \vbox (badness 10000) has occurred while \output is active [1010] [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020] [1021] Underfull \hbox (badness 3229) in paragraph at lines 4715--4720 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used, see [1022] [1023] [1024] [1025] [1026] Underfull \hbox (badness 1107) in paragraph at lines 5144--5150 []\T1/ptm/m/n/10 is []\T1/zi4/m/n/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sca led to user co-or-di-nates. Note that []\T1/zi4/m/n/10 c([][]strwidth[][][](ch) , [1027] [1028] Underfull \hbox (badness 10000) in paragraph at lines 5273--5276 [1029 >/library/graphics/help/figures//mai.pdf >] Underfull \hbox (badness 10000) in paragraph at lines 5334--5336 Underfull \vbox (badness 10000) has occurred while \output is active [1030] [1031 >/library/graphics/help/figures//oma.pdf >] [1032] [1033] Underfull \vbox (badness 3803) has occurred while \output is active [1034] [1035] [1036] [1037] [1038] [1039] [1040] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.plot}) ha s been already used, duplicate ignored \relax l.6005 \aliasA{plot}{plot.default}{plot} [1041] [1042] [1043] [1044] [1045] [1046] [1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6909--6910 [][] [1055 >/library/graphics/help/figures//pch.pdf >] [1056] Underfull \vbox (badness 3803) has occurred while \output is active [1057] [1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] [1066] [1067] [1068] [1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] [1078] [1079] [1080] [1081] [1082] [1083] [1084] [1085] [1086] [1087] [1088] [1089] Underfull \hbox (badness 4954) in paragraph at lines 9001--9003 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m /n/10 par(c("font.sub", Underfull \hbox (badness 1019) in paragraph at lines 9003--9005 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/n/10 par (c("font.lab", "cex.lab", [1090] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units}) h as been already used, duplicate ignored \relax l.9083 \HeaderA{units}{Graphical Units}{units} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units.1}) has been already used, duplicate ignored \relax l.9083 \HeaderA{units}{Graphical Units}{units} [1091] [1092] [1093] [1094]) (./grid-pkg.tex Chapter 6. [1095] [1096] [1097] [1098] [1099] [1100] [1101] [1102] [1103] Underfull \hbox (badness 2680) in paragraph at lines 550--553 []\T1/ptm/m/n/10 Note that []\T1/zi4/m/n/10 preDrawDetails []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal-c u-la-tion of [1104] [1105] [1106] [1107] [1108] [1109] [1110] [1111] [1112] [1113] [1114] Underfull \hbox (badness 4279) in paragraph at lines 1187--1196 [][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/n/10 pushViewport[][][][]\T1/p tm/m/n/10 , [][][]\T1/zi4/m/n/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/ zi4/m/n/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 seekViewpo rt[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 upViewport[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/zi4/m/n/10 unit[][][][]\T1/ptm/m/n/10 , [1115] [1116] [1117] [1118] [1119] [1120] [1121] [1122] [1123] [1124] [1125] [1126] [1127] [1128] [1129] [1130] [1131] [1132] [1133] [1134] [1135] [1136] [1137] [1138] [1139] [1140] [1141] [1142] [1143] [1144] [1145] [1146] Underfull \hbox (badness 10000) in paragraph at lines 3102--3104 []\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix; see [1147] [1148] [1149] [1150] [1151] [1152] [1153] [1154] [1155] [1156] [1157] [1158] [1159] [1160] [1161] [1162] Underfull \vbox (badness 10000) has occurred while \output is active [1163] [1164] [1165] [1166] [1167] [1168] [1169] [1170] [1171] [1172] [1173] [1174] [1175] [1176] Underfull \hbox (badness 1067) in paragraph at lines 4840--4843 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1177] [1178] [1179] [1180] [1181] [1182] Underfull \hbox (badness 7256) in paragraph at lines 5191--5193 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1183] [1184] [1185] [1186] [1187] [1188] [1189] Underfull \hbox (badness 2142) in paragraph at lines 5645--5649 []\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/n/10 gridGTreeCoords []\T1/ptm/m/n/1 0 a list of ei-ther []\T1/zi4/m/n/10 "GridGrobCoords" []\T1/ptm/m/n/10 or [1190] [1191] Underfull \hbox (badness 4699) in paragraph at lines 5727--5732 []\T1/ptm/m/n/10 Either a []\T1/zi4/m/n/10 "GridGrobCoords" []\T1/ptm/m/n/10 ob -ject (a list of lists with com-po-nents []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 an d []\T1/zi4/m/n/10 y[]\T1/ptm/m/n/10 ) or a [1192] [1193] [1194] [1195] [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203] [1204] [1205] [1206] [1207] [1208] [1209] [1210] [1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218] [1219] [1220] [1221] [1222] [1223]) (./methods-pkg.tex [1224] Chapter 7. [1225] [1226] [1227] [1228] [1229] [1230] [1231] [1232] Underfull \vbox (badness 10000) has occurred while \output is active [1233] Underfull \vbox (badness 10000) has occurred while \output is active [1234] [1235] [1236] [1237] [1238] [1239] [1240] [1241] [1242] [1243] Underfull \hbox (badness 2237) in paragraph at lines 1385--1387 []\T1/ptm/m/n/10 The class []\T1/zi4/m/n/10 "className" []\T1/ptm/m/n/10 ex-ten ds []\T1/zi4/m/n/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/n/1 0 "package"[]\T1/ptm/m/n/10 , also of class [1244] [1245] [1246] [1247] [1248] [1249] [1250] [1251] [1252] Underfull \hbox (badness 10000) in paragraph at lines 1981--1986 []\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/n/10 insertSource []\T1/ptm/m/n/ 10 can be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1981--1986 \T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/n/10 insertSource []\T1/ptm/m /n/10 it calls []\T1/zi4/m/n/10 evalSource []\T1/ptm/m/n/10 to ob-tain the [1253] [1254] [1255] Underfull \hbox (badness 2213) in paragraph at lines 2213--2218 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use []\T1/zi4/m/n/10 where = [1256] [1257] [1258] [1259] [1260] Underfull \hbox (badness 10000) in paragraph at lines 2573--2576 []\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/n/10 setGeneric[][][] []\ T1/ptm/m/n/10 and [][][]\T1/zi4/m/n/10 setGroupGeneric[][][] []\T1/ptm/m/n/10 c re-ate ob-jects of class [1261] [1262] Underfull \hbox (badness 1132) in paragraph at lines 2713--2717 []\T1/ptm/m/n/10 In []\T1/zi4/m/n/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi4 /m/n/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/n/10 package []\T1/ptm/m/n/10 sl ot of the re-turned re-sult is in [1263] Underfull \hbox (badness 1033) in paragraph at lines 2745--2750 \T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/n/10 removeGeneric []\T1/ptm/m/n/10 r e-moves the func-tion it-self; []\T1/zi4/m/n/10 removeMethods []\T1/ptm/m/n/10 re-stores the [1264] [1265] [1266] [1267] [1268] [1269] [1270] Underfull \hbox (badness 1102) in paragraph at lines 3302--3304 []\T1/zi4/m/n/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string name of the pack-age (with-out the ex-tra-ne-ous [1271] [1272] [1273] [1274] [1275] [1276] Underfull \hbox (badness 10000) in paragraph at lines 3641--3650 []\T1/ptm/m/n/10 The [1277] Underfull \hbox (badness 10000) in paragraph at lines 3761--3762 [] \T1/zi4/m/n/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longit ude = "numeric", [1278] Underfull \hbox (badness 10000) in paragraph at lines 3845--3846 []\T1/zi4/m/n/10 Currency <- setClass("Currency", slots = c(unit = "character") , contains = [1279] [1280] [1281] [1282] [1283] [1284] [1285] [1286] [1287] [1288] Underfull \hbox (badness 1769) in paragraph at lines 4476--4482 []\T1/ptm/m/n/10 class [][][]\T1/zi4/m/n/10 MethodsList[][][] []\T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4476--4482 []\T1/zi4/m/n/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class [] [][]\T1/zi4/m/n/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion use d by [1289] [1290] [1291] [1292] [1293] [1294] [1295] [1296] [1297] [1298] Underfull \vbox (badness 10000) has occurred while \output is active [1299] [1300] [1301] Underfull \hbox (badness 4036) in paragraph at lines 5445--5448 []\T1/ptm/m/n/10 Object of class []\T1/zi4/m/n/10 "PossibleMethod" []\T1/ptm/m/ n/10 the method to use in re-sponse to a [1302] [1303] Underfull \hbox (badness 3803) in paragraph at lines 5520--5522 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1304] [1305] [1306] Underfull \hbox (badness 1087) in paragraph at lines 5752--5757 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1307] [1308] [1309] [1310] [1311] [1312] [1313] [1314] [1315] Underfull \hbox (badness 1675) in paragraph at lines 6459--6465 []\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/n/10 externalRef Method(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1316] [1317] [1318] [1319] Underfull \vbox (badness 10000) has occurred while \output is active [1320] [1321] [1322] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has been already used, duplicate ignored \relax l.6981 \aliasA{S4}{S3Part}{S4} [1323] [1324] [1325] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Complex}) has been already used, duplicate ignored \relax l.7237 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Logic}) h as been already used, duplicate ignored \relax l.7239 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) ha s been already used, duplicate ignored \relax l.7240 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7242 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignored \relax l.7243 \aliasA{Summary}{S4groupGeneric}{Summary} [1326] Underfull \hbox (badness 2050) in paragraph at lines 7304--7308 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1327] [1328] [1329] Underfull \hbox (badness 1286) in paragraph at lines 7492--7494 []\T1/ptm/m/n/10 for []\T1/zi4/m/n/10 .selectSuperClasses() []\T1/ptm/m/n/10 on ly, a [][][]\T1/zi4/m/n/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions, t yp-i-cally [1330] [1331] [1332] [1333] [1334] [1335] [1336] [1337] [1338] [1339] [1340] [1341] [1342] [1343] [1344] [1345] [1346] [1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355] [1356] Underfull \vbox (badness 10000) has occurred while \output is active [1357] [1358] [1359] [1360] [1361] [1362] [1363] [1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] Underfull \hbox (badness 1852) in paragraph at lines 10572--10576 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1372] [1373] [1374] [1375]) (./parallel-pkg.tex [1376] Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z i4/m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' [][] RNG[][][]: see [1377] [1378] [1379] [1380] [1381] Underfull \hbox (badness 1320) in paragraph at lines 301--304 []\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, So-laris and Win-dows. [1382] [1383] [1384] [1385] [1386] [1387] [1388] [1389] [1390] [1391] [1392] [1393] [1394] [1395] [1396] [1397] [1398] Underfull \hbox (badness 3386) in paragraph at lines 1394--1397 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/n/10 .Random.seed []\T1/ptm/m/n/10 when the [1399] [1400]) (./splines-pkg.tex Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1401] [1402] [1403] [1404] [1405] [1406] [1407] [1408] [1409] [1410] [1411] [1412] [1413] [1414] [1415] [1416]) (./stats-pkg.tex Chapter 10. [1417] [1418] [1419] [1420] [1421] [1422] [1423] [1424] [1425] [1426] [1427] [1428] [1429] [1430] Underfull \hbox (badness 1412) in paragraph at lines 901--903 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/n/10 l m []\T1/ptm/m/n/10 or []\T1/zi4/m/n/10 aov[]\T1/ptm/m/n/10 , or a for-mula for [1431] [1432] [1433] [1434] [1435] [1436] [1437] [1438] Underfull \hbox (badness 2503) in paragraph at lines 1383--1386 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 , [1439] [1440] [1441] [1442] [1443] [1444] [1445] [1446] [1447] [1448] [1449] [1450] [1451] [1452] [1453] [1454] [1455] [1456] [1457] [1458] [1459] [1460] [1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] Underfull \hbox (badness 2503) in paragraph at lines 3546--3549 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 , [1473] [1474] Package amsmath Warning: Foreign command \atopwithdelims; (amsmath) \frac or \genfrac should be used instead (amsmath) on input line 3658. [1475] [1476] [1477] [1478] [1479] [1480] [1481] [1482] [1483] [1484] [1485] [1486] [1487] [1488] [1489] [1490] [1491] [1492] Underfull \hbox (badness 3989) in paragraph at lines 4803--4810 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1493] [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] [1502] Underfull \hbox (badness 2556) in paragraph at lines 5444--5447 []\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/n/10 "circular"[] \T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "fi lter"[]\T1/ptm/m/n/10 . For [1503] [1504] [1505] [1506] [1507] [1508] [1509] Underfull \hbox (badness 2503) in paragraph at lines 5858--5862 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 , [1510] [1511] [1512] [1513] [1514] [1515] [1516] [1517] [1518] [1519] [1520] [1521] [1522] Underfull \hbox (badness 7081) in paragraph at lines 6652--6655 []\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/n/10 "hclust" []\T1/ptm/m/n/10 ca n be con-verted to class []\T1/zi4/m/n/10 "dendrogram" []\T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 10000) in paragraph at lines 6656--6658 []\T1/zi4/m/n/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro-g ram []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also [1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530] [1531] [1532] [1533] [1534] [1535] [1536] Underfull \hbox (badness 10000) in paragraph at lines 7531--7534 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][] \T1/zi4/m/n/10 dist[][][]()[]\T1/ptm/m/n/10 , the [1537] [1538] [1539] [1540] [1541] [1542] [1543] [1544] [1545] [1546] [1547] [1548] [1549] [1550] [1551] [1552] [1553] [1554] [1555] [1556] [1557] [1558] [1559] [1560] [1561] [1562] [1563] Underfull \hbox (badness 2626) in paragraph at lines 9226--9229 []\T1/ptm/m/n/10 Either []\T1/zi4/m/n/10 "convolution" []\T1/ptm/m/n/10 or []\T 1/zi4/m/n/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1564] Underfull \hbox (badness 2503) in paragraph at lines 9333--9337 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 , [1565] [1566] [1567] [1568] [1569] [1570] [1571] [1572] [1573] [1574] [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] Underfull \hbox (badness 4518) in paragraph at lines 10685--10690 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1586] [1587] [1588] [1589] [1590] Underfull \hbox (badness 2142) in paragraph at lines 11046--11049 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ [1591] Underfull \hbox (badness 1253) in paragraph at lines 11065--11068 []\T1/ptm/m/n/10 When []\T1/zi4/m/n/10 trace []\T1/ptm/m/n/10 is true, calls to [][][]\T1/zi4/m/n/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for each IWLS it-er-a-tion. Hence, [1592] Underfull \hbox (badness 1708) in paragraph at lines 11127--11131 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1593] [1594] [1595] [1596] [1597] [1598] Underfull \hbox (badness 1694) in paragraph at lines 11523--11526 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1599] [1600] [1601] [1602] [1603] [1604] [1605] [1606] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.hat}) has been already used, duplicate ignored \relax l.12004 \aliasA{hat}{influence.measures}{hat} [1607] [1608] Underfull \hbox (badness 1484) in paragraph at lines 12146--12148 []\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/n/10 hat() []\T1/ptm/m/n/10 ex-ists mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1609] [1610] [1611] [1612] [1613] [1614] [1615] [1616] [1617] [1618] Underfull \hbox (badness 10000) in paragraph at lines 12749--12751 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/n/10 solve.de fault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/n/10 SSinit = [1619] [1620] [1621] [1622] [1623] [1624] Underfull \hbox (badness 2894) in paragraph at lines 13085--13089 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1625] [1626] [1627] [1628] [1629] [1630] Underfull \hbox (badness 1496) in paragraph at lines 13508--13514 []\T1/ptm/m/n/10 Gunar Schröer and Di-et-rich Tren-kler (1995). Ex-act and Ran- dom-iza-tion Dis-tri-bu-tions of [1631] [1632] [1633] [1634] [1635] [1636] Underfull \hbox (badness 4518) in paragraph at lines 13906--13911 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1637] [1638] [1639] [1640] [1641] [1642] [1643] [1644] [1645] [1646] Underfull \hbox (badness 4518) in paragraph at lines 14566--14571 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1647] [1648] [1649] Underfull \hbox (badness 6412) in paragraph at lines 14704--14708 []\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/n/10 (surface = "inte rpolate", statistics = Underfull \hbox (badness 1199) in paragraph at lines 14711--14713 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if []\T1/zi4/m/n/10 family []\T1/ptm/m/n/10 is [1650] [1651] [1652] [1653] [1654] [1655] [1656] [1657] [1658] [1659] [1660] [1661] [1662] [1663] [1664] [1665] [1666] [1667] Underfull \hbox (badness 2503) in paragraph at lines 15787--15791 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 , [1668] [1669] [1670] [1671] [1672] [1673] [1674] [1675] Underfull \hbox (badness 10000) in paragraph at lines 16299--16305 []\T1/zi4/m/n/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/n/ 10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to Underfull \hbox (badness 1867) in paragraph at lines 16299--16305 []\T1/zi4/m/n/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 model.re sponse(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/n/10 model.offset []\T1/ ptm/m/n/10 sums any terms [1676] [1677] [1678] [1679] [1680] [1681] [1682] [1683] [1684] [1685] [1686] [1687] [1688] [1689] [1690] [1691] [1692] [1693] [1694] [1695] [1696] [1697] [1698] [1699] [1700] [1701] Underfull \hbox (badness 1158) in paragraph at lines 17954--17957 []\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/n/10 nls []\T1 /ptm/m/n/10 as the data ar-gu-ment. The ac- [1702] [1703] Underfull \vbox (badness 3803) has occurred while \output is active [1704] Underfull \vbox (badness 10000) has occurred while \output is active [1705] Underfull \vbox (badness 10000) has occurred while \output is active [1706] [1707] [1708] [1709] [1710] [1711] [1712] [1713] [1714] [1715] [1716] [1717] [1718] [1719] Underfull \hbox (badness 1377) in paragraph at lines 18988--18993 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 18993--18996 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 2343) in paragraph at lines 19006--19010 []\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i t is un-able to re-duce Underfull \hbox (badness 3471) in paragraph at lines 19006--19010 \T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/n/10 reltol * (abs(val) + reltol) []\T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 19014--19018 []\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/n/10 "BFGS"[]\T 1/ptm/m/n/10 , []\T1/zi4/m/n/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/n/1 0 "SANN" []\T1/ptm/m/n/10 meth-ods if [1720] [1721] [1722] Underfull \vbox (badness 10000) has occurred while \output is active [1723] Overfull \hbox (15.73795pt too wide) in paragraph at lines 19239--19239 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Overfull \hbox (3.75941pt too wide) in paragraph at lines 19242--19242 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1724] [1725] [1726] [1727] [1728] [1729] [1730] Underfull \hbox (badness 1337) in paragraph at lines 19701--19704 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1731] [1732] [1733] [1734] [1735] [1736] [1737] [1738] [1739] Underfull \hbox (badness 10000) in paragraph at lines 20172--20178 \T1/zi4/m/n/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 s distance", lty = cook.lty, col = cook.col, text.col [1740] [1741] [1742] [1743] [1744] Underfull \hbox (badness 1194) in paragraph at lines 20510--20513 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1745] [1746] [1747] [1748] [1749] [1750] [1751] Underfull \hbox (badness 2503) in paragraph at lines 20889--20892 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/n/10 "two.sided"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3919) in paragraph at lines 20916--20918 []\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/n/10 "Exact Poisson test" [ ]\T1/ptm/m/n/10 or []\T1/zi4/m/n/10 "Comparison of Poisson [1752] [1753] [1754] [1755] [1756] [1757] [1758] [1759] [1760] [1761] [1762] [1763] [1764] [1765] [1766] [1767] [1768] [1769] Underfull \hbox (badness 10000) in paragraph at lines 21995--22001 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/n/10 predict.ar[ ][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 predict.Arima[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/zi4/m/n/10 predict.arima0[][][][]\T1/ptm/m/n/10 , [1770] [1771] [1772] [1773] [1774] [1775] [1776] [1777] [1778] [1779] [1780] [1781] [1782] [1783] [1784] [1785] [1786] [1787] [1788] [1789] [1790] [1791] [1792] [1793] Underfull \hbox (badness 1337) in paragraph at lines 23393--23399 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1794] [1795] [1796] [1797] [1798] [1799] [1800] [1801] Underfull \hbox (badness 1436) in paragraph at lines 23883--23886 \T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t o 4.0.x, this had been set to []\T1/zi4/m/n/10 max(2, [1802] Underfull \hbox (badness 10000) in paragraph at lines 24024--24025 []\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . or g / wiki / Quantile # Estimating _ quantiles _ from _ a _ [1803] [1804] [1805] [1806] [1807] [1808] [1809] [1810] [1811] [1812] [1813] [1814] [1815] [1816] [1817] [1818] Underfull \hbox (badness 1824) in paragraph at lines 24996--25002 []\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/n/10 x []\T1/ptm/m/n/10 are f irst re-placed by al-ter- Underfull \hbox (badness 1033) in paragraph at lines 24996--25002 \T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/ m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where [1819] Underfull \hbox (badness 10000) in paragraph at lines 25017--25020 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/n/10 y = r unmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/n/10 y[j] = [1820] Underfull \vbox (badness 3803) has occurred while \output is active [1821] [1822] [1823] [1824] [1825] [1826] [1827] [1828] Underfull \hbox (badness 2165) in paragraph at lines 25599--25604 []\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/n/10 "selfStart" []\T1 /ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/n/10 SSasymp[][][][]\T1/p tm/m/n/10 , [][][]\T1/zi4/m/n/10 SSasympOff[][][][]\T1/ptm/m/n/10 , [1829] [1830] [1831] [1832] Underfull \hbox (badness 1867) in paragraph at lines 25809--25811 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 25825--25829 []\T1/ptm/m/n/10 where []\T1/zi4/m/n/10 NN <- [][]nobs[][][](object, use.fallba ck = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 PP <- [1833] [1834] [1835] [1836] [1837] [1838] [1839] [1840] [1841] [1842] [1843] [1844] [1845] [1846] [1847] [1848] [1849] [1850] [1851] [1852] [1853] [1854] [1855] [1856] [1857] Underfull \vbox (badness 10000) has occurred while \output is active [1858] [1859] Underfull \hbox (badness 3514) in paragraph at lines 27486--27491 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1860] [1861] [1862] [1863] Overfull \hbox (2.23795pt too wide) in paragraph at lines 27720--27720 [] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] Underfull \hbox (badness 3514) in paragraph at lines 27756--27762 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1864] Overfull \hbox (20.23795pt too wide) in paragraph at lines 27813--27813 []\T1/zi4/m/n/9 fmX1 <- nls(conc ~ SSbiexp(time, A1, lrc1, A2, lrc2), data = d atN, control = list(scaleOffset=1))[] Overfull \hbox (11.22874pt too wide) in paragraph at lines 27815--27815 [] \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol=1 e-11, nDcentral=TRUE), trace=TRUE)[] [1865] [1866] [1867] Underfull \hbox (badness 3514) in paragraph at lines 27989--27994 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1868] [1869] Underfull \hbox (badness 3514) in paragraph at lines 28076--28081 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1870] Underfull \hbox (badness 3514) in paragraph at lines 28141--28146 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1871] [1872] Underfull \hbox (badness 3514) in paragraph at lines 28235--28240 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 inpu t[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1873] [1874] Underfull \hbox (badness 6691) in paragraph at lines 28327--28332 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/n/10 x[]\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1875] [1876] [1877] [1878] [1879] [1880] [1881] [1882] Underfull \hbox (badness 4024) in paragraph at lines 28818--28821 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion , which [1883] [1884] [1885] [1886] [1887] [1888] [1889] [1890] [1891] [1892] Underfull \hbox (badness 5431) in paragraph at lines 29427--29429 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1893] [1894] [1895] Underfull \hbox (badness 5431) in paragraph at lines 29637--29640 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/n/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1896] [1897] [1898] [1899] [1900] [1901] Underfull \hbox (badness 1337) in paragraph at lines 29952--29956 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1902] [1903] [1904] [1905] [1906] Underfull \hbox (badness 1616) in paragraph at lines 30288--30291 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1907] [1908] [1909] [1910] [1911] [1912] [1913] [1914] [1915] [1916] [1917] [1918] [1919] [1920] [1921] [1922] [1923] [1924] [1925] [1926] Underfull \hbox (badness 3557) in paragraph at lines 31512--31516 []\T1/ptm/m/n/10 Setting []\T1/zi4/m/n/10 extendInt []\T1/ptm/m/n/10 to a non-[ ]\T1/zi4/m/n/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-rect []\T1/zi4/m/n/10 interval = [1927] [1928] [1929] Underfull \vbox (badness 10000) has occurred while \output is active [1930] [1931] [1932] Underfull \hbox (badness 1337) in paragraph at lines 31879--31883 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1933] [1934] [1935] [1936] [1937] [1938] [1939] [1940] [1941] Underfull \hbox (badness 1337) in paragraph at lines 32408--32412 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1942] [1943] [1944] Overfull \hbox (0.71648pt too wide) in paragraph at lines 32616--32616 []\T1/zi4/m/n/9 wilcox.test( 4:2, 3:1, paired=TRUE) # Warning: canno t compute exact p-value with ties[] [1945] [1946] [1947] Overfull \hbox (19.71954pt too wide) in paragraph at lines 32777--32777 [] \T1/zi4/m/n/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.eps = getOption("ts.eps"), ...)[] [1948] [1949] [1950] [1951] [1952]) (./stats4-pkg.tex Chapter 11. [1953] [1954] [1955] Underfull \vbox (badness 10000) has occurred while \output is active [1956] Underfull \vbox (badness 10000) has occurred while \output is active [1957] [1958] [1959] [1960] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.show.Rdas h.methods}) has been already used, duplicate ignored \relax l.503 ...Package \pkg{stats4}}{show.Rdash.methods} [1961] [1962] [1963]) (./tcltk-pkg.tex [1964] Chapter 12. [1965] [1966] [1967] [1968] [1969] [1970] [1971] Underfull \vbox (badness 10000) has occurred while \output is active [1972] Underfull \vbox (badness 10000) has occurred while \output is active [1973] Underfull \hbox (badness 1546) in paragraph at lines 671--678 []\T1/zi4/m/n/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-i ng any Tk or Tcl com-mand by sim-ply run-ning [1974] [1975] [1976] [1977] [1978] Underfull \vbox (badness 10000) has occurred while \output is active [1979] [1980] [1981] [1982] [1983] [1984] [1985] [1986]) (./tools-pkg.tex Chapter 13. [1987] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1988] Underfull \hbox (badness 3039) in paragraph at lines 167--170 []\T1/zi4/m/n/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing will be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1989] [1990] Underfull \hbox (badness 1308) in paragraph at lines 288--301 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 288--301 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/n/10 bi bentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 288--301 []\T1/zi4/m/n/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatIn Proceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatManual[]\T1/ptm/m/n/10 , [ ]\T1/zi4/m/n/10 formatMastersthesis[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 288--301 []\T1/zi4/m/n/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatPhdthesis[ ]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1/zi 4/m/n/10 formatTechreport []\T1/ptm/m/n/10 and [1991] [1992] Underfull \hbox (badness 3039) in paragraph at lines 392--394 []\T1/zi4/m/n/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gin e to use. Over-rides any [1993] Underfull \hbox (badness 1142) in paragraph at lines 464--468 \T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s ub-di-rec-tory [1994] [1995] [1996] [1997] [1998] [1999] [2000] [2001] [2002] [2003] [2004] [2005] [2006] Underfull \hbox (badness 1014) in paragraph at lines 1188--1190 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1194--1196 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous [2007] Underfull \hbox (badness 10000) in paragraph at lines 1231--1234 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1231--1234 []\T1/zi4/m/n/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and [ ]\T1/zi4/m/n/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 , [2008] [2009] [2010] [2011] [2012] Underfull \hbox (badness 10000) in paragraph at lines 1606--1609 []\T1/ptm/m/n/10 Internal func-tions []\T1/zi4/m/n/10 CRAN_aliases_db[]\T1/ptm/ m/n/10 , []\T1/zi4/m/n/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CR AN_current_db []\T1/ptm/m/n/10 and [2013] [2014] Underfull \hbox (badness 4096) in paragraph at lines 1725--1733 \T1/zi4/m/n/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string Underfull \hbox (badness 1082) in paragraph at lines 1735--1737 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or []\T1/zi4/m/n/10 NULL []\T1/ptm/m/n/10 for all known trees (see [2015] [2016] [2017] [2018] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.GSC}) has been already used, duplicate ignored \relax l.1937 \aliasA{GSC}{find\_gs\_cmd}{GSC} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSC MD}) has been already used, duplicate ignored \relax l.1938 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [2019] [2020] [2021] [2022] [2023] [2024] [2025] Underfull \hbox (badness 3386) in paragraph at lines 2412--2415 []\T1/ptm/m/n/10 The de-fault method of []\T1/zi4/m/n/10 as.Rconcordance []\T1/ ptm/m/n/10 searches for strings match-ing the pat-tern of [2026] [2027] Underfull \hbox (badness 4096) in paragraph at lines 2552--2560 \T1/zi4/m/n/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string [2028] [2029] [2030] [2031] [2032] [2033] [2034] [2035] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 3046. LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 3047. LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 3047. [2036] [2037] [2038] [2039] [2040] Underfull \hbox (badness 1424) in paragraph at lines 3358--3360 []\T1/zi4/m/it/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec -tor of links, as re-turned by [2041] [2042] [2043] [2044] [2045] [2046] [2047] [2048] [2049] [2050] [2051] Underfull \hbox (badness 10000) in paragraph at lines 4080--4082 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [2052] [2053] Underfull \hbox (badness 10000) in paragraph at lines 4219--4222 []\T1/ptm/m/n/10 Where sup-ported ([]\T1/zi4/m/it/10 texi2dvi []\T1/ptm/m/n/10 5.0 and later; []\T1/zi4/m/it/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op- tion [2054] [2055] [2056] [2057] [2058] [2059] Underfull \hbox (badness 1796) in paragraph at lines 4577--4582 []\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over [] \T1/zi4/m/it/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/it/10 type = = Underfull \hbox (badness 4699) in paragraph at lines 4627--4631 []\T1/ptm/m/n/10 a string, by de-fault empty, of op-tions to []\T1/zi4/m/it/10 msgmerge []\T1/ptm/m/n/10 in ad-di-tion to Underfull \hbox (badness 1946) in paragraph at lines 4627--4631 []\T1/zi4/m/it/10 "--update"[]\T1/ptm/m/n/10 . Since \T1/phv/m/n/10 R \T1/ptm/m /n/10 4.2.0, []\T1/zi4/m/it/10 "--no-wrap" []\T1/ptm/m/n/10 is used when called from [2060] Underfull \hbox (badness 1838) in paragraph at lines 4655--4661 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/it/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4655--4661 \T1/ptm/m/n/10 `\T1/zi4/m/it/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [2061] [2062] [2063] [2064] Underfull \hbox (badness 2197) in paragraph at lines 4936--4946 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z i4/m/it/10 available.packages[][][][]\T1/ptm/m/n/10 : [2065] Underfull \hbox (badness 1571) in paragraph at lines 5002--5006 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [2066] [2067] [2068] [2069]) (./utils-pkg.tex [2070] Chapter 14. [2071] Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/zi4/m/it/10 insertions[]\T1/ptm/m/n/10 ', [2072] [2073] [2074] [2075] [2076] [2077] [2078] [2079] [2080] [2081] Underfull \hbox (badness 10000) in paragraph at lines 729--735 []\T1/ptm/m/n/10 Functions []\T1/zi4/m/it/10 aspell_package_Rd_files[]\T1/ptm/m /n/10 , []\T1/zi4/m/it/10 aspell_package_vignettes[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 729--735 []\T1/zi4/m/it/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the [2082] [2083] [2084] Underfull \hbox (badness 3861) in paragraph at lines 934--939 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/it/10 "OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 "License"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/it/10 "License_is_FOSS"[]\T1/ptm/m/n/10 , [2085] [2086] [2087] Underfull \hbox (badness 10000) in paragraph at lines 1136--1138 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [2088] [2089] [2090] Underfull \vbox (badness 10000) has occurred while \output is active [2091] [2092] [2093] [2094] [2095] Underfull \hbox (badness 1371) in paragraph at lines 1664--1666 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to [2096] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 1734. [2097] [2098] [2099] [2100] [2101] [2102] [2103] [2104] [2105] [2106] [2107] Underfull \hbox (badness 2057) in paragraph at lines 2384--2386 []\T1/ptm/m/n/10 None for []\T1/zi4/m/it/10 chooseCRANmirror()[]\T1/ptm/m/n/10 , this func-tion is in-voked for its side ef-fect of up-dat-ing [2108] Underfull \hbox (badness 2150) in paragraph at lines 2459--2466 []\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/zi4/m/it/10 citation() []\T1 /ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print Underfull \hbox (badness 1400) in paragraph at lines 2459--2466 \T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I f a pack-age has more [2109] [2110] [2111] Underfull \vbox (badness 3803) has occurred while \output is active [2112] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.clipboard }) has been already used, duplicate ignored \relax l.2736 ... the Clipboard in MS Windows}{clipboard} [2113] [2114] [2115] [2116] [2117] [2118] [2119] [2120] [2121] [2122] [2123] [2124] [2125] [2126] [2127] [2128] [2129] [2130] [2131] [2132] [2133] Underfull \hbox (badness 6842) in paragraph at lines 4046--4051 []\T1/ptm/m/n/10 Support for method []\T1/zi4/m/it/10 "libcurl" []\T1/ptm/m/n/1 0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use [2134] Underfull \hbox (badness 1430) in paragraph at lines 4109--4113 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the []\T1/zi4/m/it/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the [2135] Underfull \hbox (badness 1184) in paragraph at lines 4180--4196 []\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/it/10 method = "libcurl"[]\T1/ptm /m/n/10 , the CA root cer-tifi-cates are pro-vided by the OS Underfull \hbox (badness 1019) in paragraph at lines 4180--4196 \T1/ptm/m/n/10 con-tain-ing `[]\T1/zi4/m/it/10 "Schannel"[]\T1/ptm/m/n/10 '. If it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-ment vari- Underfull \hbox (badness 1668) in paragraph at lines 4180--4196 \T1/ptm/m/n/10 able []\T1/zi4/m/it/10 CURL_CA_BUNDLE []\T1/ptm/m/n/10 must be s et to a path to a cer-tifi-cate bun-dle file, usu-ally named [2136] [2137] Underfull \hbox (badness 10000) in paragraph at lines 4330--4332 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/it/10 d ownload.file[][][] []\T1/ptm/m/n/10 and [2138] [2139] [2140] [2141] [2142] [2143] [2144] [2145] [2146] [2147] [2148] [2149] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.5101 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format.1} ) has been already used, duplicate ignored \relax l.5101 ...mat Unordered and Ordered Lists}{format} [2150] [2151] [2152] [2153] [2154] [2155] [2156] [2157] Underfull \hbox (badness 1622) in paragraph at lines 5624--5628 []\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing to ex-ter-nal GUIs or to the [2158] [2159] [2160] [2161] [2162] [2163] Underfull \hbox (badness 1448) in paragraph at lines 6003--6008 []\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject s, cor-re-spond-ing to call-ing [2164] [2165] [2166] [2167] [2168] [2169] [2170] [2171] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 6550. Underfull \hbox (badness 1371) in paragraph at lines 6554--6556 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/it/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/it/10 ccaddress []\T1/ptm/m/n/10 to pass to [2172] Underfull \hbox (badness 1502) in paragraph at lines 6643--6648 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 6643--6648 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [2173] [2174] [2175] Underfull \hbox (badness 10000) in paragraph at lines 6816--6825 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, [2176] Underfull \hbox (badness 2150) in paragraph at lines 6880--6883 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [2177] [2178] Underfull \hbox (badness 3118) in paragraph at lines 7019--7021 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [2179] [2180] [2181] Underfull \hbox (badness 1325) in paragraph at lines 7198--7202 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/it/10 available.pack ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able [2182] Underfull \hbox (badness 1424) in paragraph at lines 7290--7293 []\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p tm/m/it/10 not \T1/ptm/m/n/10 passed to [2183] Underfull \hbox (badness 3219) in paragraph at lines 7361--7368 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/i t/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 7361--7368 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 7361--7368 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by Underfull \hbox (badness 1596) in paragraph at lines 7361--7368 [][][]\T1/zi4/m/it/10 getOption[][][]("install.packages.compile.from.source")[] \T1/ptm/m/n/10 . []\T1/zi4/m/it/10 type = "both" []\T1/ptm/m/n/10 will be silen tly Underfull \hbox (badness 2932) in paragraph at lines 7369--7372 []\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/it/10 type = "source" []\T1/p tm/m/n/10 al-ways works pro-vided the pack-age con-tains no [2184] Underfull \hbox (badness 1024) in paragraph at lines 7499--7502 []\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/it/10 available. packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 , ] []\T1/ ptm/m/n/10 will [2185] Underfull \hbox (badness 10000) in paragraph at lines 7532--7537 [][][]\T1/zi4/m/it/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/i t/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 download. packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 installed.packages[][][] []\T1/ptm/m/n/10 , [2186] Underfull \hbox (badness 5133) in paragraph at lines 7591--7595 []\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each pack-age's [2187] [2188] [2189] [2190] [2191] [2192] [2193] [2194] [2195] [2196] [2197] Underfull \hbox (badness 10000) in paragraph at lines 8252--8254 []\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/it/10 methods(..)[]\T1/pt m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class [2198] [2199] [2200] [2201] [2202] [2203] [2204] [2205] [2206] [2207] [2208] [2209] Underfull \hbox (badness 2310) in paragraph at lines 9016--9021 []\T1/ptm/m/n/10 If a `\T1/zi4/m/it/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [2210] [2211] [2212] [2213] [2214] [2215] [2216] [2217] [2218] Underfull \hbox (badness 1248) in paragraph at lines 9582--9586 []\T1/zi4/m/it/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/ m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the [2219] Underfull \hbox (badness 1789) in paragraph at lines 9662--9664 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [2220] [2221] [2222] [2223] Underfull \hbox (badness 2600) in paragraph at lines 9886--9889 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the name of the help topic; de-faults to [2224] [2225] [2226] [2227] [2228] [2229] [2230] [2231] [2232] Underfull \hbox (badness 1097) in paragraph at lines 10513--10516 []\T1/ptm/m/n/10 The name []\T1/zi4/m/it/10 "clipboard" []\T1/ptm/m/n/10 may al so be used on Win-dows, in which case [2233] [2234] Underfull \hbox (badness 3000) in paragraph at lines 10649--10654 [][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m /n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/ it/10 read.table[][][][]\T1/ptm/m/n/10 ; [2235] [2236] [2237] [2238] [2239] [2240] [2241] [2242] [2243] Underfull \hbox (badness 2134) in paragraph at lines 11243--11248 [][][]\T1/zi4/m/it/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 type.c onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/it/10 read.fwf[][][] []\T1/ptm/m /n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/ it/10 write.table[][][][]\T1/ptm/m/n/10 ; [2244] Underfull \hbox (badness 10000) in paragraph at lines 11299--11304 []\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for Underfull \hbox (badness 10000) in paragraph at lines 11299--11304 []\T1/zi4/m/it/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/zi4/m/it/10 HKEY_C LASSES_ROOT[]\T1/ptm/m/n/10 . []\T1/zi4/m/it/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/ 10 , [2245] [2246] [2247] [2248] [2249] [2250] [2251] [2252] Underfull \hbox (badness 2469) in paragraph at lines 11797--11801 []\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia , The Free En-cy-clo-pe-dia. Underfull \hbox (badness 3428) in paragraph at lines 11797--11801 [][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / w / index . php ? title = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac- [2253] [2254] [2255] [2256] [2257] [2258] [2259] Underfull \hbox (badness 4060) in paragraph at lines 12224--12227 []\T1/ptm/m/n/10 If `[]\T1/zi4/m/it/10 --default-packages[]\T1/ptm/m/n/10 ' is not used, then []\T1/zi4/m/it/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron- ment vari-able Overfull \hbox (18.77168pt too wide) in paragraph at lines 12247--12247 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] [2260] [2261] [2262] [2263] Underfull \hbox (badness 2150) in paragraph at lines 12502--12504 [][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/ ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / www . gnu . org / software / emac s / manual / [2264] [2265] [2266] [2267] Underfull \hbox (badness 10000) in paragraph at lines 12722--12726 []\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/it/10 stylepath []\T1/ptm/m/n/10 is now taken from the en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 12755--12761 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a Underfull \hbox (badness 2762) in paragraph at lines 12770--12776 \T1/ptm/m/n/10 UTF-8 lo-cales (note that pdf-TeX as-sumes UTF-8 by de-fault sin ce 2018). Ei-ther set [2268] [2269] Underfull \hbox (badness 1009) in paragraph at lines 12945--12957 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If [2270] Underfull \hbox (badness 4779) in paragraph at lines 12985--12987 []\T1/ptm/m/n/10 The file `\T1/zi4/m/it/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure s the R GUI ([]\T1/zi4/m/it/10 Rgui[]\T1/ptm/m/n/10 ) con-sole un-der MS Win-do ws and Underfull \hbox (badness 1077) in paragraph at lines 13015--13022 \T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p er-sonal' di-rec-tory, oth-er-wise to [2271] [2272] [2273] [2274] [2275] [2276] [2277] Underfull \hbox (badness 3780) in paragraph at lines 13437--13443 []\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][][]\ T1/zi4/m/it/10 options[][][]("BioC_mirror")[]\T1/ptm/m/n/10 , e.g. via Underfull \hbox (badness 2635) in paragraph at lines 13455--13458 []\T1/ptm/m/n/10 Repository `[]\T1/zi4/m/it/10 CRAN[]\T1/ptm/m/n/10 ' is treate d spe-cially: the value is taken from the cur-rent set-ting of [2278] [2279] [2280] [2281] Underfull \hbox (badness 2302) in paragraph at lines 13660--13662 []\T1/ptm/m/n/10 Convert file paths to the short form. 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replaced by a fixed one pdfTeX warning (dest): name{Rfn.chron} has been referenced but does not exist, replaced by a fixed one Output written on fullrefman.pdf (2437 pages, 6613688 bytes). Transcript written on fullrefman.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-FAQ.texi @setfilename R-FAQ.info This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) (/usr/share/texmf/tex/texinfo/txi-en.tex) [1{/var/lib/texmf/fonts/map/pdftex/up dmap/pdftex.map}] [-1] Chapter 1 Cross reference values unknown; you must run TeX again. [1] Chapter 2 [2] Underfull \hbox (badness 10000) in paragraph at lines 291--313 @textrm and sparc @reducedrm CPU[]@textrm s (e.g., [][]@texttt https:// buildd . debian. org/ build. php? & pkg=r-base[][]@textrm ), [3] [4] [5] [6] Underfull \hbox (badness 10000) in paragraph at lines 640--643 []@textrm Robert Gen-tle-man (2008), ``R Pro-gram-ming for Bioin-for-mat-ics'' . Underfull \hbox (badness 7379) in paragraph at lines 640--643 @textrm Chap-man & Hall/CRC, Boca Ra-ton, FL, ISBN 978-1-420-06367-7, Underfull \hbox (badness 10000) in paragraph at lines 640--643 [][]@texttt https:// master. bioconductor. org/ help/ publications/ book s/ [7] Underfull \hbox (badness 10000) in paragraph at lines 667--672 @textrm (doi: [][]10.1080/10618600.1996.10474713 (@texttt https:// doi. org/ 10. 1080/ 10618600. 1996. [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] [18] Underfull \hbox (badness 10000) in paragraph at lines 1536--1539 []@textrm See also [][]@texttt https:// en. wikipedia. org/ wiki/ R_progra mming_language# Underfull \hbox (badness 10000) in paragraph at lines 1536--1539 @texttt Commercialized_versions_of_R[][] @textrm for point-ers to com-mer-cial- ized ver-sions of Chapter 4 [19] Chapter 5 [20] [21] [22] Overfull \hbox (14.27353pt too wide) in paragraph at lines 1824--1824 []@smalltt MASS Support Functions and Datasets for Venables and Riple y s MASS[] [23] [24] Chapter 6 [25] [26] Chapter 7 [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] Writing index file R-FAQ.fn [39] Underfull \hbox (badness 10000) in paragraph at lines 3133--3147 @textrm and @texttt error.bars.by()[] @textrm func-tions in the [][]@textbf psy ch @textrm (@texttt https:// CRAN. R-project. org/ [40] [41] [42] Chapter 8 [43] Chapter 9 [44] [45] [46] Chapter 10 [47] [48] ) (see the transcript file for additional information) Output written on R-FAQ.pdf (50 pages, 350702 bytes). Transcript written on R-FAQ.log. This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) (/usr/share/texmf/tex/texinfo/txi-en.tex) [1{/var/lib/texmf/fonts/map/pdftex/up dmap/pdftex.map}] (/<>/doc/manual/R-FAQ.toc) (/<>/doc/manual/R-FAQ.toc [-1] [-2]) [-3] (/<>/doc/manual/R-FAQ.toc) (/<>/doc/manual/R-FAQ.toc) Chapter 1 (/<>/doc/manual/R-FAQ.aux) [1] Chapter 2 [2] Underfull \hbox (badness 10000) in paragraph at lines 291--313 @textrm and sparc @reducedrm CPU[]@textrm s (e.g., [][]@texttt https:// buildd . debian. org/ build. php? & pkg=r-base[][]@textrm ), [3] [4] [5] [6] Underfull \hbox (badness 10000) in paragraph at lines 640--643 []@textrm Robert Gen-tle-man (2008), ``R Pro-gram-ming for Bioin-for-mat-ics'' . Underfull \hbox (badness 7379) in paragraph at lines 640--643 @textrm Chap-man & Hall/CRC, Boca Ra-ton, FL, ISBN 978-1-420-06367-7, Underfull \hbox (badness 10000) in paragraph at lines 640--643 [][]@texttt https:// master. bioconductor. org/ help/ publications/ book s/ [7] Underfull \hbox (badness 10000) in paragraph at lines 667--672 @textrm (doi: [][]10.1080/10618600.1996.10474713 (@texttt https:// doi. org/ 10. 1080/ 10618600. 1996. [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] [18] Underfull \hbox (badness 10000) in paragraph at lines 1536--1539 []@textrm See also [][]@texttt https:// en. wikipedia. org/ wiki/ R_progra mming_language# Underfull \hbox (badness 10000) in paragraph at lines 1536--1539 @texttt Commercialized_versions_of_R[][] @textrm for point-ers to com-mer-cial- ized ver-sions of Chapter 4 [19] Chapter 5 [20] [21] [22] Overfull \hbox (14.27353pt too wide) in paragraph at lines 1824--1824 []@smalltt MASS Support Functions and Datasets for Venables and Riple y s MASS[] [23] [24] Chapter 6 [25] [26] Chapter 7 [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] Writing index file R-FAQ.fn [39] Underfull \hbox (badness 10000) in paragraph at lines 3133--3147 @textrm and @texttt error.bars.by()[] @textrm func-tions in the [][]@textbf psy ch @textrm (@texttt https:// CRAN. R-project. org/ [40] [41] [42] Chapter 8 [43] Chapter 9 [44] [45] [46] Chapter 10 [47] [48] ) (see the transcript file for additional information) Output written on R-FAQ.pdf (52 pages, 367687 bytes). Transcript written on R-FAQ.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-admin.texi @setfilename R-admin.info This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-admin.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Writing index file R-admin.cp Writing index file R-admin.en [1] Chapter 2 [2] Cross reference values unknown; you must run TeX again. [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] Chapter 3 [17] Underfull \hbox (badness 10000) in paragraph at lines 1477--1483 @textrm (@texttt https:// CRAN. R-project. org/ bin/ windows/ Rtools/ rt ools43/ rtools. html[]@textrm )[]. [18] [19] Chapter 4 [20] [21] [22] Underfull \hbox (badness 10000) in paragraph at lines 1793--1803 @texttt org.R-project.x86_64.R.fw.pkg[]@textrm , @texttt org.R-project.x86_64.R .GUI.pkg[]@textrm , @texttt org.r- Chapter 5 [23] Chapter 6 [24] Overfull \hbox (14.94176pt too wide) in paragraph at lines 1935--1935 []@texttt [1] "datasets" "utils" "grDevices" "graphics" "stats" "met hods"[] [25] [26] Underfull \hbox (badness 6842) in paragraph at lines 2164--2172 []@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age s. No ad-di- [27] [28] [29] Overfull \hbox (78.17732pt too wide) in paragraph at lines 2392--2392 []@texttt ./configure CC="clang -arch arm64" CFLAGS=-O2 CXX="clang++ -arch arm 64" CXXFLAGS=-O2[] [30] [31] [32] [33] Overfull \hbox (20.69044pt too wide) in paragraph at lines 2717--2717 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl libdir @textt t --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] Chapter 7 [34] [35] [36] Chapter 8 [37] Chapter 9 [38] [39] [40] Appendix A [41] [42] Overfull \hbox (49.43388pt too wide) in paragraph at lines 3354--3354 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit -- disable-cpp[] [43] [44] [45] [46] Overfull \hbox (14.94176pt too wide) in paragraph at lines 3662--3662 []@texttt JAVA_HOME=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.322.b06-6.fc34.x86_6 4/jre[] [47] [48] [49] [50] [51] [52] [53] [54] Appendix B [55] [56] [57] [58] [59] [60] Appendix C [61] [62] [63] [64] Overfull \hbox (14.94176pt too wide) in paragraph at lines 5038--5038 []@texttt -Werror=format-security -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSER TIONS[] [65] [66] Overfull \hbox (20.69044pt too wide) in paragraph at lines 5186--5186 []@texttt LDFLAGS="-L/path/to/compilers/compiler/lib/intel64_lin -L/usr/local/ lib64"[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 5241--5241 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS: kdenestmlcvb :: kdenestmlcvb[] [67] Overfull \hbox (20.69044pt too wide) in paragraph at lines 5269--5269 []@texttt LDFLAGS="-L/path/to/compilers/compiler/lib/intel64_lin -L/usr/local/ lib64"[] [68] [69] Overfull \hbox (134.35066pt too wide) in paragraph at lines 5429--5429 []@texttt curl -OL https://mac.r-project.org/bin/darwin20/x86_64/pcre2-10.42-d arwin.20-x86_64.tar.xz[] Overfull \hbox (117.1046pt too wide) in paragraph at lines 5431--5431 []@texttt curl -OL https://mac.r-project.org/bin/darwin20/x86_64/xz-5.4.2-darw in.20-x86_64.tar.xz[] [70] Overfull \hbox (32.18782pt too wide) in paragraph at lines 5541--5541 []@texttt curl -OL https://mac.r-project.org/tools/subversion-1.14.0-darwin15. 6.tar.gz[] [71] Overfull \hbox (170.15633pt too wide) in paragraph at lines 5573--5573 [] @texttt could not create compact unwind for _arcoef_: registers 23 and 24 not saved contiguously in frame[] Overfull \hbox (38.79282pt too wide) in paragraph at lines 5582--5583 [][][]@smallrm See [][]@smalltt https:// developer. apple. com/ documentati on/ xcode/ notarizing_macos_software_before_distribution[][]@smallrm .| [72] Overfull \hbox (101.17207pt too wide) in paragraph at lines 5703--5703 []@texttt CC="$LOCAL/llvm/bin/clang -isysroot /Library/Developer/CommandLineTo ols/SDKs/MacOSX.sdk"[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 5704--5704 []@texttt CXX="$LOCAL/llvm/bin/clang++ -isysroot /Library/Developer/CommandLin eTools/SDKs/MacOSX.sdk"[] [73] Overfull \hbox (72.77429pt too wide) in paragraph at lines 5766--5766 [][][][][]@smalltt https:// cran. r-project. org/ bin/ macosx/ RMacOSX-FA Q. html# Which-BLAS-is-used-and-how-can-it-be-changed_003f[][]| [74] [75] Overfull \hbox (14.94176pt too wide) in paragraph at lines 5926--5926 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/termurin-17.jdk/Contents /Home[] Underfull \hbox (badness 10000) in paragraph at lines 5935--5944 @texttt downloads/ zulu-community/ ? os=macos& architecture=arm-64-bit& pa ckage=jdk[][] @textrm and [76] [77] Overfull \hbox (48.12035pt too wide) in paragraph at lines 6057--6057 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0/libgfortran.5. dylib \[] Overfull \hbox (48.12035pt too wide) in paragraph at lines 6062--6062 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0/libquadmath.0. dylib \[] Overfull \hbox (25.1256pt too wide) in paragraph at lines 6080--6080 []@texttt PKG_LIBS = /usr/local/llvm/lib/libc++.a /usr/local/llvm/lib/libc++ab i.a[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 6103--6103 []@texttt FC="/opt//gfortran/bin/gfortran -arch x86_64 -mtune=native -mmacosx- version-min=11"[] [78] [79] (Function and variable index) [80] No file R-admin.vrs. (Concept index) [81] No file R-admin.cps. (Environment variable index) [82] No file R-admin.ens. [83] ) (see the transcript file for additional information) pdfTeX warning (dest): name{\040Tcl/Tk\040headers\040and\040libraries} has been referenced but does not exist, replaced by a fixed one Output written on R-admin.pdf (86 pages, 479835 bytes). Transcript written on R-admin.log. This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-admin.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-admin.toc) (/<>/doc/manual/R-admin.toc [-1] [-2]) [-3] (/<>/doc/manual/R-admin.toc) (/<>/doc/manual/R-admin.toc) Chapter 1 (/<>/doc/manual/R-admin.aux) Writing index file R-admin.cp Writing index file R-admin.en [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] Chapter 3 [17] Underfull \hbox (badness 10000) in paragraph at lines 1477--1483 @textrm (@texttt https:// CRAN. R-project. org/ bin/ windows/ Rtools/ rt ools43/ rtools. html[]@textrm )[]. [18] [19] Chapter 4 [20] [21] [22] Underfull \hbox (badness 10000) in paragraph at lines 1793--1803 @texttt org.R-project.x86_64.R.fw.pkg[]@textrm , @texttt org.R-project.x86_64.R .GUI.pkg[]@textrm , @texttt org.r- Chapter 5 [23] Chapter 6 [24] Overfull \hbox (14.94176pt too wide) in paragraph at lines 1935--1935 []@texttt [1] "datasets" "utils" "grDevices" "graphics" "stats" "met hods"[] [25] [26] Underfull \hbox (badness 6842) in paragraph at lines 2164--2172 []@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age s. No ad-di- [27] [28] [29] Overfull \hbox (78.17732pt too wide) in paragraph at lines 2392--2392 []@texttt ./configure CC="clang -arch arm64" CFLAGS=-O2 CXX="clang++ -arch arm 64" CXXFLAGS=-O2[] [30] [31] [32] [33] Overfull \hbox (20.69044pt too wide) in paragraph at lines 2717--2717 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl libdir @textt t --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] Chapter 7 [34] [35] [36] Chapter 8 [37] Chapter 9 [38] [39] [40] Appendix A [41] [42] Overfull \hbox (49.43388pt too wide) in paragraph at lines 3354--3354 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit -- disable-cpp[] [43] [44] [45] [46] Overfull \hbox (14.94176pt too wide) in paragraph at lines 3662--3662 []@texttt JAVA_HOME=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.322.b06-6.fc34.x86_6 4/jre[] [47] [48] [49] [50] [51] [52] [53] [54] Appendix B [55] [56] [57] [58] [59] [60] Appendix C [61] [62] [63] [64] Overfull \hbox (14.94176pt too wide) in paragraph at lines 5038--5038 []@texttt -Werror=format-security -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSER TIONS[] [65] [66] Overfull \hbox (20.69044pt too wide) in paragraph at lines 5186--5186 []@texttt LDFLAGS="-L/path/to/compilers/compiler/lib/intel64_lin -L/usr/local/ lib64"[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 5241--5241 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS: kdenestmlcvb :: kdenestmlcvb[] [67] Overfull \hbox (20.69044pt too wide) in paragraph at lines 5269--5269 []@texttt LDFLAGS="-L/path/to/compilers/compiler/lib/intel64_lin -L/usr/local/ lib64"[] [68] [69] Overfull \hbox (134.35066pt too wide) in paragraph at lines 5429--5429 []@texttt curl -OL https://mac.r-project.org/bin/darwin20/x86_64/pcre2-10.42-d arwin.20-x86_64.tar.xz[] Overfull \hbox (117.1046pt too wide) in paragraph at lines 5431--5431 []@texttt curl -OL https://mac.r-project.org/bin/darwin20/x86_64/xz-5.4.2-darw in.20-x86_64.tar.xz[] l.5478: Undefined cross reference ` Tcl/Tk headers and libraries-snt'. l.5478: Undefined cross reference ` Tcl/Tk headers and libraries-snt'. l.5478: Undefined cross reference ` Tcl/Tk headers and libraries-pg'. [70] Overfull \hbox (32.18782pt too wide) in paragraph at lines 5541--5541 []@texttt curl -OL https://mac.r-project.org/tools/subversion-1.14.0-darwin15. 6.tar.gz[] [71] Overfull \hbox (170.15633pt too wide) in paragraph at lines 5573--5573 [] @texttt could not create compact unwind for _arcoef_: registers 23 and 24 not saved contiguously in frame[] Overfull \hbox (38.79282pt too wide) in paragraph at lines 5582--5583 [][][]@smallrm See [][]@smalltt https:// developer. apple. com/ documentati on/ xcode/ notarizing_macos_software_before_distribution[][]@smallrm .| [72] Overfull \hbox (101.17207pt too wide) in paragraph at lines 5703--5703 []@texttt CC="$LOCAL/llvm/bin/clang -isysroot /Library/Developer/CommandLineTo ols/SDKs/MacOSX.sdk"[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 5704--5704 []@texttt CXX="$LOCAL/llvm/bin/clang++ -isysroot /Library/Developer/CommandLin eTools/SDKs/MacOSX.sdk"[] [73] Overfull \hbox (72.77429pt too wide) in paragraph at lines 5766--5766 [][][][][]@smalltt https:// cran. r-project. org/ bin/ macosx/ RMacOSX-FA Q. html# Which-BLAS-is-used-and-how-can-it-be-changed_003f[][]| [74] [75] Overfull \hbox (14.94176pt too wide) in paragraph at lines 5926--5926 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/termurin-17.jdk/Contents /Home[] Underfull \hbox (badness 10000) in paragraph at lines 5935--5944 @texttt downloads/ zulu-community/ ? os=macos& architecture=arm-64-bit& pa ckage=jdk[][] @textrm and [76] [77] Overfull \hbox (48.12035pt too wide) in paragraph at lines 6057--6057 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0/libgfortran.5. dylib \[] Overfull \hbox (48.12035pt too wide) in paragraph at lines 6062--6062 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0/libquadmath.0. dylib \[] Overfull \hbox (25.1256pt too wide) in paragraph at lines 6080--6080 []@texttt PKG_LIBS = /usr/local/llvm/lib/libc++.a /usr/local/llvm/lib/libc++ab i.a[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 6103--6103 []@texttt FC="/opt//gfortran/bin/gfortran -arch x86_64 -mtune=native -mmacosx- version-min=11"[] [78] [79] (Function and variable index) [80] (/<>/doc/manual/R-admin.vrs) (Concept index) [81] (/<>/doc/manual/R-admin.cps) (Environment variable index) [82] (/<>/doc/manual/R-admin.ens) [83] ) (see the transcript file for additional information) pdfTeX warning (dest): name{\040Tcl/Tk\040headers\040and\040libraries} has been referenced but does not exist, replaced by a fixed one Output written on R-admin.pdf (88 pages, 522749 bytes). Transcript written on R-admin.log. This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-admin.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-admin.toc) (/<>/doc/manual/R-admin.toc [-1] [-2]) [-3] (/<>/doc/manual/R-admin.toc) (/<>/doc/manual/R-admin.toc) Chapter 1 (/<>/doc/manual/R-admin.aux) Writing index file R-admin.cp Writing index file R-admin.en [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] Chapter 3 [17] Underfull \hbox (badness 10000) in paragraph at lines 1477--1483 @textrm (@texttt https:// CRAN. R-project. org/ bin/ windows/ Rtools/ rt ools43/ rtools. html[]@textrm )[]. [18] [19] Chapter 4 [20] [21] [22] Underfull \hbox (badness 10000) in paragraph at lines 1793--1803 @texttt org.R-project.x86_64.R.fw.pkg[]@textrm , @texttt org.R-project.x86_64.R .GUI.pkg[]@textrm , @texttt org.r- Chapter 5 [23] Chapter 6 [24] Overfull \hbox (14.94176pt too wide) in paragraph at lines 1935--1935 []@texttt [1] "datasets" "utils" "grDevices" "graphics" "stats" "met hods"[] [25] [26] Underfull \hbox (badness 6842) in paragraph at lines 2164--2172 []@texttt R CMD INSTALL[] @textrm works in Win-dows to in-stall source pack-age s. No ad-di- [27] [28] [29] Overfull \hbox (78.17732pt too wide) in paragraph at lines 2392--2392 []@texttt ./configure CC="clang -arch arm64" CFLAGS=-O2 CXX="clang++ -arch arm 64" CXXFLAGS=-O2[] [30] [31] [32] [33] Overfull \hbox (20.69044pt too wide) in paragraph at lines 2717--2717 []@texttt R --arch @textttsl arch @texttt CMD check -l @textttsl libdir @textt t --extra-arch --install=check:@textttsl pkg@texttt .log @textttsl pkg[] Chapter 7 [34] [35] [36] Chapter 8 [37] Chapter 9 [38] [39] [40] Appendix A [41] [42] Overfull \hbox (49.43388pt too wide) in paragraph at lines 3354--3354 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit -- disable-cpp[] [43] [44] [45] [46] Overfull \hbox (14.94176pt too wide) in paragraph at lines 3662--3662 []@texttt JAVA_HOME=/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.322.b06-6.fc34.x86_6 4/jre[] [47] [48] [49] [50] [51] [52] [53] [54] Appendix B [55] [56] [57] [58] [59] [60] Appendix C [61] [62] [63] [64] Overfull \hbox (14.94176pt too wide) in paragraph at lines 5038--5038 []@texttt -Werror=format-security -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSER TIONS[] [65] [66] Overfull \hbox (20.69044pt too wide) in paragraph at lines 5186--5186 []@texttt LDFLAGS="-L/path/to/compilers/compiler/lib/intel64_lin -L/usr/local/ lib64"[] Overfull \hbox (26.43913pt too wide) in paragraph at lines 5241--5241 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS: kdenestmlcvb :: kdenestmlcvb[] [67] Overfull \hbox (20.69044pt too wide) in paragraph at lines 5269--5269 []@texttt LDFLAGS="-L/path/to/compilers/compiler/lib/intel64_lin -L/usr/local/ lib64"[] [68] [69] Overfull \hbox (134.35066pt too wide) in paragraph at lines 5429--5429 []@texttt curl -OL https://mac.r-project.org/bin/darwin20/x86_64/pcre2-10.42-d arwin.20-x86_64.tar.xz[] Overfull \hbox (117.1046pt too wide) in paragraph at lines 5431--5431 []@texttt curl -OL https://mac.r-project.org/bin/darwin20/x86_64/xz-5.4.2-darw in.20-x86_64.tar.xz[] l.5478: Undefined cross reference ` Tcl/Tk headers and libraries-snt'. l.5478: Undefined cross reference ` Tcl/Tk headers and libraries-snt'. l.5478: Undefined cross reference ` Tcl/Tk headers and libraries-pg'. [70] Overfull \hbox (32.18782pt too wide) in paragraph at lines 5541--5541 []@texttt curl -OL https://mac.r-project.org/tools/subversion-1.14.0-darwin15. 6.tar.gz[] [71] Overfull \hbox (170.15633pt too wide) in paragraph at lines 5573--5573 [] @texttt could not create compact unwind for _arcoef_: registers 23 and 24 not saved contiguously in frame[] Overfull \hbox (38.79282pt too wide) in paragraph at lines 5582--5583 [][][]@smallrm See [][]@smalltt https:// developer. apple. com/ documentati on/ xcode/ notarizing_macos_software_before_distribution[][]@smallrm .| [72] Overfull \hbox (101.17207pt too wide) in paragraph at lines 5703--5703 []@texttt CC="$LOCAL/llvm/bin/clang -isysroot /Library/Developer/CommandLineTo ols/SDKs/MacOSX.sdk"[] Overfull \hbox (118.41814pt too wide) in paragraph at lines 5704--5704 []@texttt CXX="$LOCAL/llvm/bin/clang++ -isysroot /Library/Developer/CommandLin eTools/SDKs/MacOSX.sdk"[] [73] Overfull \hbox (72.77429pt too wide) in paragraph at lines 5766--5766 [][][][][]@smalltt https:// cran. r-project. org/ bin/ macosx/ RMacOSX-FA Q. html# Which-BLAS-is-used-and-how-can-it-be-changed_003f[][]| [74] [75] Overfull \hbox (14.94176pt too wide) in paragraph at lines 5926--5926 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/termurin-17.jdk/Contents /Home[] Underfull \hbox (badness 10000) in paragraph at lines 5935--5944 @texttt downloads/ zulu-community/ ? os=macos& architecture=arm-64-bit& pa ckage=jdk[][] @textrm and [76] [77] Overfull \hbox (48.12035pt too wide) in paragraph at lines 6057--6057 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0/libgfortran.5. dylib \[] Overfull \hbox (48.12035pt too wide) in paragraph at lines 6062--6062 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0/libquadmath.0. dylib \[] Overfull \hbox (25.1256pt too wide) in paragraph at lines 6080--6080 []@texttt PKG_LIBS = /usr/local/llvm/lib/libc++.a /usr/local/llvm/lib/libc++ab i.a[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 6103--6103 []@texttt FC="/opt//gfortran/bin/gfortran -arch x86_64 -mtune=native -mmacosx- version-min=11"[] [78] [79] (Function and variable index) [80] (/<>/doc/manual/R-admin.vrs) (Concept index) [81] (/<>/doc/manual/R-admin.cps) (Environment variable index) [82] (/<>/doc/manual/R-admin.ens) [83] ) (see the transcript file for additional information) pdfTeX warning (dest): name{\040Tcl/Tk\040headers\040and\040libraries} has been referenced but does not exist, replaced by a fixed one Output written on R-admin.pdf (88 pages, 522757 bytes). Transcript written on R-admin.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-data.texi @setfilename R-data.info This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-data.t2d/pdf/xtr/R-data.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-data.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Acknowledgements) [1] Chapter 1 [2] Writing index file R-data.cp Cross reference values unknown; you must run TeX again. [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 434--437 []@textrm Function @texttt write.matrix[] @textrm in pack-age [][]@textbf MASS @textrm (@texttt https:// CRAN. R-project. org/ Underfull \hbox (badness 10000) in paragraph at lines 445--449 []@textrm Function @texttt write.foreign[] @textrm in pack-age [][]@textbf fore ign @textrm (@texttt https:// CRAN. R-project. org/ [6] Chapter 2 [7] [8] [9] [10] [11] [12] [13] Chapter 3 [14] [15] Chapter 4 [16] Underfull \hbox (badness 10000) in paragraph at lines 1219--1231 @textrm (@texttt https:// www. ibm. com/ products/ informix[]@textrm )[]; [][]Oracle (@texttt https:// www. oracle. com[]@textrm )[]; Underfull \hbox (badness 10000) in paragraph at lines 1219--1231 @textrm (@texttt https:// www. microsoft. com/ sql-server/ []@textrm )[] o n Win-dows) and aca-demic and [17] [18] [19] [20] [21] [22] Chapter 5 [23] Underfull \hbox (badness 10000) in paragraph at lines 1792--1798 []@textrm Packages [][]@textbf h5 @textrm (@texttt https:// CRAN. R-project. org/ package=h5[]@textrm )[], Bio-con-duc-tor's @textbf rhdf5@textrm , Chapter 6 [24] Chapter 7 [25] [26] [27] [28] [29] Chapter 8 [30] Chapter 9 [31] Appendix A [32] (Function and variable index) [33] No file R-data.vrs. (Concept index) [34] No file R-data.cps. [35] ) (see the transcript file for additional information) Output written on R-data.pdf (38 pages, 266673 bytes). Transcript written on R-data.log. This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-data.t2d/pdf/xtr/R-data.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-data.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-data.toc) (/<>/doc/manual/R-data.toc [-1]) [-2] (/<>/doc/manual/R-data.toc) (/<>/doc/manual/R-data.toc) (Acknowledgements) (/<>/doc/manual/R-data.aux) [1] Chapter 1 [2] Writing index file R-data.cp [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 434--437 []@textrm Function @texttt write.matrix[] @textrm in pack-age [][]@textbf MASS @textrm (@texttt https:// CRAN. R-project. org/ Underfull \hbox (badness 10000) in paragraph at lines 445--449 []@textrm Function @texttt write.foreign[] @textrm in pack-age [][]@textbf fore ign @textrm (@texttt https:// CRAN. R-project. org/ [6] Chapter 2 [7] [8] [9] [10] [11] [12] [13] Chapter 3 [14] [15] Chapter 4 [16] Underfull \hbox (badness 10000) in paragraph at lines 1219--1231 @textrm (@texttt https:// www. ibm. com/ products/ informix[]@textrm )[]; [][]Oracle (@texttt https:// www. oracle. com[]@textrm )[]; Underfull \hbox (badness 10000) in paragraph at lines 1219--1231 @textrm (@texttt https:// www. microsoft. com/ sql-server/ []@textrm )[] o n Win-dows) and aca-demic and [17] [18] [19] [20] [21] [22] Chapter 5 [23] Underfull \hbox (badness 10000) in paragraph at lines 1792--1798 []@textrm Packages [][]@textbf h5 @textrm (@texttt https:// CRAN. R-project. org/ package=h5[]@textrm )[], Bio-con-duc-tor's @textbf rhdf5@textrm , Chapter 6 [24] Chapter 7 [25] [26] [27] [28] [29] Chapter 8 [30] Chapter 9 [31] Appendix A [32] (Function and variable index) [33] (/<>/doc/manual/R-data.vrs [34]) (Concept index) [35] (/<>/doc/manual/R-data.cps) [36] [37] ) (see the transcript file for additional information) Output written on R-data.pdf (41 pages, 302649 bytes). Transcript written on R-data.log. This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-data.t2d/pdf/xtr/R-data.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-data.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-data.toc) (/<>/doc/manual/R-data.toc [-1]) [-2] (/<>/doc/manual/R-data.toc) (/<>/doc/manual/R-data.toc) (Acknowledgements) (/<>/doc/manual/R-data.aux) [1] Chapter 1 [2] Writing index file R-data.cp [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 434--437 []@textrm Function @texttt write.matrix[] @textrm in pack-age [][]@textbf MASS @textrm (@texttt https:// CRAN. R-project. org/ Underfull \hbox (badness 10000) in paragraph at lines 445--449 []@textrm Function @texttt write.foreign[] @textrm in pack-age [][]@textbf fore ign @textrm (@texttt https:// CRAN. R-project. org/ [6] Chapter 2 [7] [8] [9] [10] [11] [12] [13] Chapter 3 [14] [15] Chapter 4 [16] Underfull \hbox (badness 10000) in paragraph at lines 1219--1231 @textrm (@texttt https:// www. ibm. com/ products/ informix[]@textrm )[]; [][]Oracle (@texttt https:// www. oracle. com[]@textrm )[]; Underfull \hbox (badness 10000) in paragraph at lines 1219--1231 @textrm (@texttt https:// www. microsoft. com/ sql-server/ []@textrm )[] o n Win-dows) and aca-demic and [17] [18] [19] [20] [21] [22] Chapter 5 [23] Underfull \hbox (badness 10000) in paragraph at lines 1792--1798 []@textrm Packages [][]@textbf h5 @textrm (@texttt https:// CRAN. R-project. org/ package=h5[]@textrm )[], Bio-con-duc-tor's @textbf rhdf5@textrm , Chapter 6 [24] Chapter 7 [25] [26] [27] [28] [29] Chapter 8 [30] Chapter 9 [31] Appendix A [32] (Function and variable index) [33] (/<>/doc/manual/R-data.vrs [34]) (Concept index) [35] (/<>/doc/manual/R-data.cps) [36] [37] ) (see the transcript file for additional information) Output written on R-data.pdf (41 pages, 302654 bytes). Transcript written on R-data.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-exts.texi @setfilename R-exts.info This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-exts.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Acknowledgements) Chapter 1 [1] Writing index file R-exts.cp Cross reference values unknown; you must run TeX again. [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 499--502 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] Underfull \hbox (badness 10000) in paragraph at lines 1301--1302 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1302--1303 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1305--1307 @texttt R_MAKEVARS_USER[]@textrm , @texttt ~/.R/Makevars- Underfull \hbox (badness 10000) in paragraph at lines 1307--1309 @texttt ~/.R/Makevars.win64[]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 1315--1316 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1316--1317 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1319--1321 @texttt R_MAKEVARS_USER[]@textrm , @texttt ~/.R/Makevars- Underfull \hbox (badness 10000) in paragraph at lines 1321--1323 @texttt ~/.R/Makevars.win64[]@textrm , [17] [18] [19] [20] Overfull \hbox (95.42339pt too wide) in paragraph at lines 1586--1586 [] @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec" , "--no-test-load")[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 1587--1587 [] @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL , quiet = TRUE)[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 1588--1588 [] @texttt res[z] <- file.size(file.path(lib, pkg_name, "data", "Rdata. rdb"))[] Underfull \hbox (badness 10000) in paragraph at lines 1619--1626 @texttt org/ package=amap[]@textrm )[]), Python or Tcl ([][]@textbf Simile @te xtrm (@texttt https:// CRAN. R-project. org/ [21] [22] [23] [24] [25] [26] Overfull \hbox (32.18782pt too wide) in paragraph at lines 2025--2025 []@texttt $ pkg-config --exists libtiff-4 >= 4.1.0 --print-errors # check the status[] [27] [28] [29] Overfull \hbox (14.94176pt too wide) in paragraph at lines 2265--2265 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF LAGS)[] [30] [31] [32] [33] [34] Overfull \hbox (67.78206pt too wide) in paragraph at lines 2668--2668 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (53.60722pt too wide) in paragraph at lines 2670--2670 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [35] [36] Overfull \hbox (16.92342pt too wide) in paragraph at lines 2808--2808 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar e defined.[] [37] [38] Underfull \hbox (badness 7221) in paragraph at lines 2995--3001 [][][]@smallrm See [][]@smalltt https:// isocpp. org/ std/ standing-documen ts/ sd-6-sg10-feature-test-recommendations[][] @smallrm or [39] Overfull \hbox (60.93126pt too wide) in paragraph at lines 3070--3070 [] @texttt CXX="$(CXX17) $(CXX17STD)" CXXFLAGS="$(CXX17FLAGS) $(CXX 17PICFLAGS)")[] [40] [41] [42] [43] Overfull \hbox (43.6852pt too wide) in paragraph at lines 3314--3314 []@texttt if test -z "$CMAKE"; then CMAKE=/Applications/CMake.app/Contents/bin /cmake; fi[] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] Overfull \hbox (20.69044pt too wide) in paragraph at lines 4718--4718 []@texttt importFrom("stats", approx, optim, pchisq, predict, qchisq, qnorm, s pline)[] [61] [62] [63] Overfull \hbox (81.29893pt too wide) in paragraph at lines 4945--4945 [] @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB ILITY)" \[] Overfull \hbox (59.61772pt too wide) in paragraph at lines 4964--4964 []@texttt CXXFLAGS = ^^R"${RBIN}" CMD config CXXFLAGS^^R ^^R"${RBIN}" CMD conf ig CXXPICFLAGS^^R[] [64] [65] [66] [67] [68] [69] Overfull \hbox (53.86903pt too wide) in paragraph at lines 5414--5414 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (48.12035pt too wide) in paragraph at lines 5416--5416 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (65.36641pt too wide) in paragraph at lines 5417--5417 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Overfull \hbox (76.86378pt too wide) in paragraph at lines 5432--5432 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] [70] [71] [72] [73] [74] Overfull \hbox (14.94176pt too wide) in paragraph at lines 5804--5804 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@ euro"[] [75] [76] Underfull \hbox (badness 10000) in paragraph at lines 5966--5969 @texttt gcc/ C-Extensions. html[][] @textrm and [][]@texttt https:// gcc. gnu. org/ onlinedocs/ gcc/ [77] Overfull \hbox (19.3769pt too wide) in paragraph at lines 6044--6044 []@texttt abs acos atan bind calloc ceil div exp fabs floor fmod free log mall oc[] [78] [79] Overfull \hbox (53.86903pt too wide) in paragraph at lines 6197--6197 []@texttt register storage class specifier is deprecated and incompatible with C++17[] [80] Overfull \hbox (13.62822pt too wide) in paragraph at lines 6253--6253 []@texttt #if defined (__unix__) || (defined (__APPLE__) && defined (__MACH__) )[] [81] Overfull \hbox (48.12035pt too wide) in paragraph at lines 6324--6324 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS: kdenestmlcvb :: kdenestmlcvb[] Overfull \hbox (25.1256pt too wide) in paragraph at lines 6336--6336 []@texttt warning: argument 1 value 18446744073709551615 exceeds maximum object[] Underfull \hbox (badness 10000) in paragraph at lines 6358--6359 [][][]@smallrm See [][]@smalltt https:// prereleases. llvm. org/ 11. 0. 0 / rc2/ tools/ clang/ docs/ ReleaseNotes. html# [82] [83] [84] [85] [86] Overfull \hbox (19.3769pt too wide) in paragraph at lines 6758--6758 []@texttt #define dngettext(pkg, String, StringP, N) (N == 1 ? String : String P)[] [87] [88] [89] Chapter 2 [90] [91] [92] [93] [94] [95] [96] [97] [98] [99] [100] [101] [102] [103] Underfull \hbox (badness 10000) in paragraph at lines 8027--8034 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [104] [105] [106] [107] [108] [109] Chapter 3 [110] [111] [112] [113] [114] Overfull \hbox (20.69044pt too wide) in paragraph at lines 8926--8926 [] @texttt as.integer(runif(N, 1, 12)), as.integer(runif(N, 1, 28)))[] [115] [116] Chapter 4 [117] [118] [119] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9251--9251 []@texttt evaluation nested too deeply: infinite recursion / options(expressio ns=)?[] [120] Overfull \hbox (25.25755pt too wide) in paragraph at lines 9292--9292 []@smalltt Message: Error: no valid set of coefficients has been found: pleas e supply starting values[] [121] Overfull \hbox (20.53261pt too wide) in paragraph at lines 9396--9396 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star t, etastart = etastart,[] Overfull \hbox (38.96663pt too wide) in paragraph at lines 9426--9435 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. @texttt debug(stats:::predict.Arima)[]@textrm . [122] [123] [124] [125] Underfull \hbox (badness 10000) in paragraph at lines 9699--9711 @texttt controlling-code-generation[][]@textrm , [][]@texttt https:// clang. llvm. org/ docs/ AddressSanitizer. Overfull \hbox (48.90796pt too wide) in paragraph at lines 9715--9716 [][][]@smallrm see [][]@smalltt https:// llvm. org/ devmtg/ 2014-04/ PDFs/ LightningTalks/ EuroLLVM%202014%20--%20container%20overflow. [126] [127] Overfull \hbox (78.17732pt too wide) in paragraph at lines 9854--9854 []@texttt setenv ASAN_OPTIONS alloc_dealloc_mismatch=0:detect_leaks=0:detect_odr_violation=0 [] Overfull \hbox (29.50735pt too wide) in paragraph at lines 9887--9889 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by @t exttt -fsanitize=undefined,address[] [128] Underfull \hbox (badness 10000) in paragraph at lines 9975--9979 [][]@texttt https:// blog. llvm. org/ 2011/ 05/ what-every-c-programmer-s hould-know. html[][] [129] Overfull \hbox (2.03816pt too wide) in paragraph at lines 10010--10014 []@textrm See [][]@texttt https:// gcc. gnu. org/ onlinedocs/ gcc-10. 1. 0/ gcc/ Static-Analyzer-Options. Overfull \hbox (72.42863pt too wide) in paragraph at lines 10033--10033 []@texttt Fortran runtime error: Index 1 of dimension 1 of array x above upper bound of 0[] [130] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10078--10078 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl assi,[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10081--10081 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t( cu)),[] [131] Overfull \hbox (26.43913pt too wide) in paragraph at lines 10160--10160 []@texttt #5 0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9 698f98,[] [132] [133] [134] Underfull \hbox (badness 10000) in paragraph at lines 10403--10405 [][][]@smallrm See [][]@smalltt https:// svn. r-project. org/ R-dev-web/ t runk/ CRAN/ QA/ Simon/ R-build/ fixpathR[][]@smallrm : [135] Overfull \hbox (124.16682pt too wide) in paragraph at lines 10462--10462 []@texttt boot.f:61: warning: type of ddot does not match original declaration [-Wlto-type-mismatch][] Overfull \hbox (147.16158pt too wide) in paragraph at lines 10481--10481 []@texttt rkpk2.f:77:5: warning: type of dstup does not match original declaration [-Wlto-type-mismatch][] Overfull \hbox (141.41289pt too wide) in paragraph at lines 10492--10492 []@texttt reg.f:78:33: warning: type of dqrdc does not match original declaration [-Wlto-type-mismatch][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10512--10512 [] @tex ttt 1[] [136] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10521--10521 [] @tex ttt 1[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10522--10522 []@texttt Warning: Type mismatch in argument jpvt at (1); passed REAL(8) to INTEGER(4)[] Chapter 5 [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] Overfull \hbox (30.87428pt too wide) in paragraph at lines 11338--11338 [] @texttt double *w, int *iper, double *span, double *al pha,[] Overfull \hbox (51.66371pt too wide) in paragraph at lines 11402--11402 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [148] [149] Overfull \hbox (60.93126pt too wide) in paragraph at lines 11566--11566 [] @texttt na_omit_xts_func fun = (na_omit_xts_func) R_GetCCallable("xts", "n a_omit_xts");[] [150] [151] [152] [153] [154] [155] Overfull \hbox (37.93651pt too wide) in paragraph at lines 12000--12000 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12860--12860 [] @texttt if(ign == NA_LOGICAL) error(" ignore_quotes must be TRUE or FALSE");[] [167] Underfull \hbox (badness 10000) in paragraph at lines 13010--13014 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [168] [169] [170] [171] [172] [173] [174] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13573--13573 [] @texttt // a version with (too) much PROTECT()ion .. "better safe than s orry"[] [175] [176] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13697--13697 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] [177] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13702--13702 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13757--13757 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13770--13770 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] [178] Overfull \hbox (26.43913pt too wide) in paragraph at lines 13869--13869 [] @texttt cmdexpr = PROTECT(R_ParseVector(cmdSexp, -1, &status, R_NilV alue));[] [179] [180] Overfull \hbox (14.94176pt too wide) in paragraph at lines 14018--14018 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one xit);[] [181] Overfull \hbox (43.6852pt too wide) in paragraph at lines 14108--14108 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [182] [183] Overfull \hbox (72.42863pt too wide) in paragraph at lines 14203--14203 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE _ANY} cetype_t;[] Chapter 6 [184] [185] [186] [187] [188] [189] [190] [191] [192] Overfull \hbox (20.69044pt too wide) in paragraph at lines 15003--15003 [] @texttt call cmsg(msg//c_null_char) ! need to concatenate a nul term inator[] Underfull \hbox (badness 10000) in paragraph at lines 15021--15026 @texttt com/ content/ www/ us/ en/ docs/ fortran-compiler/ developer-gui de-reference/ [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] Underfull \hbox (badness 10000) in paragraph at lines 15748--15752 []@texttt R_orderVector()[] @textrm cor-re-sponds to R's @texttt order(..., na .last, decreasing)[]@textrm . [203] Warning: unbalanced parentheses in @def... [204] [205] Overfull \hbox (26.43913pt too wide) in paragraph at lines 15971--15971 [] @texttt void (*clean)(void *data, Rboolean jump), void *cdata,[] [206] [207] [208] [209] [210] Chapter 7 [211] [212] Chapter 8 [213] [214] [215] Overfull \hbox (43.6852pt too wide) in paragraph at lines 16731--16731 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [216] Overfull \hbox (20.69044pt too wide) in paragraph at lines 16774--16774 []@texttt extern int (*ptr_R_ReadConsole)(const char *, unsigned char *, int, int);[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 16789--16789 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [217] [218] [219] [220] [221] [222] [223] [224] [225] (Function and variable index) [226] No file R-exts.vrs. (Concept index) [227] No file R-exts.cps. [228] ) (see the transcript file for additional information) Output written on R-exts.pdf (231 pages, 983504 bytes). Transcript written on R-exts.log. This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-exts.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-exts.toc) (/<>/doc/manual/R-exts.toc [-1] [-2] [-3] [-4]) [-5] (/<>/doc/manual/R-exts.toc) (/<>/doc/manual/R-exts.toc) (Acknowledgements) (/<>/doc/manual/R-exts.aux) Chapter 1 [1] Writing index file R-exts.cp [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 499--502 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] Underfull \hbox (badness 10000) in paragraph at lines 1301--1302 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1302--1303 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1305--1307 @texttt R_MAKEVARS_USER[]@textrm , @texttt ~/.R/Makevars- Underfull \hbox (badness 10000) in paragraph at lines 1307--1309 @texttt ~/.R/Makevars.win64[]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 1315--1316 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1316--1317 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1319--1321 @texttt R_MAKEVARS_USER[]@textrm , @texttt ~/.R/Makevars- Underfull \hbox (badness 10000) in paragraph at lines 1321--1323 @texttt ~/.R/Makevars.win64[]@textrm , [17] [18] [19] [20] Overfull \hbox (95.42339pt too wide) in paragraph at lines 1586--1586 [] @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec" , "--no-test-load")[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 1587--1587 [] @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL , quiet = TRUE)[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 1588--1588 [] @texttt res[z] <- file.size(file.path(lib, pkg_name, "data", "Rdata. rdb"))[] Underfull \hbox (badness 10000) in paragraph at lines 1619--1626 @texttt org/ package=amap[]@textrm )[]), Python or Tcl ([][]@textbf Simile @te xtrm (@texttt https:// CRAN. R-project. org/ [21] [22] [23] [24] [25] [26] Overfull \hbox (32.18782pt too wide) in paragraph at lines 2025--2025 []@texttt $ pkg-config --exists libtiff-4 >= 4.1.0 --print-errors # check the status[] [27] [28] [29] Overfull \hbox (14.94176pt too wide) in paragraph at lines 2265--2265 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF LAGS)[] [30] [31] [32] [33] [34] Overfull \hbox (67.78206pt too wide) in paragraph at lines 2668--2668 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (53.60722pt too wide) in paragraph at lines 2670--2670 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [35] [36] Overfull \hbox (16.92342pt too wide) in paragraph at lines 2808--2808 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar e defined.[] [37] [38] Underfull \hbox (badness 7221) in paragraph at lines 2995--3001 [][][]@smallrm See [][]@smalltt https:// isocpp. org/ std/ standing-documen ts/ sd-6-sg10-feature-test-recommendations[][] @smallrm or [39] Overfull \hbox (60.93126pt too wide) in paragraph at lines 3070--3070 [] @texttt CXX="$(CXX17) $(CXX17STD)" CXXFLAGS="$(CXX17FLAGS) $(CXX 17PICFLAGS)")[] [40] [41] [42] [43] Overfull \hbox (43.6852pt too wide) in paragraph at lines 3314--3314 []@texttt if test -z "$CMAKE"; then CMAKE=/Applications/CMake.app/Contents/bin /cmake; fi[] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] Overfull \hbox (20.69044pt too wide) in paragraph at lines 4718--4718 []@texttt importFrom("stats", approx, optim, pchisq, predict, qchisq, qnorm, s pline)[] [61] [62] [63] Overfull \hbox (81.29893pt too wide) in paragraph at lines 4945--4945 [] @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB ILITY)" \[] Overfull \hbox (59.61772pt too wide) in paragraph at lines 4964--4964 []@texttt CXXFLAGS = ^^R"${RBIN}" CMD config CXXFLAGS^^R ^^R"${RBIN}" CMD conf ig CXXPICFLAGS^^R[] [64] [65] [66] [67] [68] [69] Overfull \hbox (53.86903pt too wide) in paragraph at lines 5414--5414 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (48.12035pt too wide) in paragraph at lines 5416--5416 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (65.36641pt too wide) in paragraph at lines 5417--5417 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Overfull \hbox (76.86378pt too wide) in paragraph at lines 5432--5432 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] [70] [71] [72] [73] [74] Overfull \hbox (14.94176pt too wide) in paragraph at lines 5804--5804 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@ euro"[] [75] [76] Underfull \hbox (badness 10000) in paragraph at lines 5966--5969 @texttt gcc/ C-Extensions. html[][] @textrm and [][]@texttt https:// gcc. gnu. org/ onlinedocs/ gcc/ [77] Overfull \hbox (19.3769pt too wide) in paragraph at lines 6044--6044 []@texttt abs acos atan bind calloc ceil div exp fabs floor fmod free log mall oc[] [78] [79] Overfull \hbox (53.86903pt too wide) in paragraph at lines 6197--6197 []@texttt register storage class specifier is deprecated and incompatible with C++17[] [80] Overfull \hbox (13.62822pt too wide) in paragraph at lines 6253--6253 []@texttt #if defined (__unix__) || (defined (__APPLE__) && defined (__MACH__) )[] [81] Overfull \hbox (48.12035pt too wide) in paragraph at lines 6324--6324 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS: kdenestmlcvb :: kdenestmlcvb[] Overfull \hbox (25.1256pt too wide) in paragraph at lines 6336--6336 []@texttt warning: argument 1 value 18446744073709551615 exceeds maximum object[] Underfull \hbox (badness 10000) in paragraph at lines 6358--6359 [][][]@smallrm See [][]@smalltt https:// prereleases. llvm. org/ 11. 0. 0 / rc2/ tools/ clang/ docs/ ReleaseNotes. html# [82] [83] [84] [85] [86] Overfull \hbox (19.3769pt too wide) in paragraph at lines 6758--6758 []@texttt #define dngettext(pkg, String, StringP, N) (N == 1 ? String : String P)[] [87] [88] [89] Chapter 2 [90] [91] [92] [93] [94] [95] [96] [97] [98] [99] [100] [101] [102] [103] Underfull \hbox (badness 10000) in paragraph at lines 8027--8034 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [104] [105] [106] [107] [108] [109] Chapter 3 [110] [111] [112] [113] [114] Overfull \hbox (20.69044pt too wide) in paragraph at lines 8926--8926 [] @texttt as.integer(runif(N, 1, 12)), as.integer(runif(N, 1, 28)))[] [115] [116] Chapter 4 [117] [118] [119] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9251--9251 []@texttt evaluation nested too deeply: infinite recursion / options(expressio ns=)?[] [120] Overfull \hbox (25.25755pt too wide) in paragraph at lines 9292--9292 []@smalltt Message: Error: no valid set of coefficients has been found: pleas e supply starting values[] [121] Overfull \hbox (20.53261pt too wide) in paragraph at lines 9396--9396 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star t, etastart = etastart,[] Overfull \hbox (38.96663pt too wide) in paragraph at lines 9426--9435 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. @texttt debug(stats:::predict.Arima)[]@textrm . [122] [123] [124] [125] Underfull \hbox (badness 10000) in paragraph at lines 9699--9711 @texttt controlling-code-generation[][]@textrm , [][]@texttt https:// clang. llvm. org/ docs/ AddressSanitizer. Overfull \hbox (48.90796pt too wide) in paragraph at lines 9715--9716 [][][]@smallrm see [][]@smalltt https:// llvm. org/ devmtg/ 2014-04/ PDFs/ LightningTalks/ EuroLLVM%202014%20--%20container%20overflow. [126] [127] Overfull \hbox (78.17732pt too wide) in paragraph at lines 9854--9854 []@texttt setenv ASAN_OPTIONS alloc_dealloc_mismatch=0:detect_leaks=0:detect_odr_violation=0 [] Overfull \hbox (29.50735pt too wide) in paragraph at lines 9887--9889 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by @t exttt -fsanitize=undefined,address[] [128] Underfull \hbox (badness 10000) in paragraph at lines 9975--9979 [][]@texttt https:// blog. llvm. org/ 2011/ 05/ what-every-c-programmer-s hould-know. html[][] [129] Overfull \hbox (2.03816pt too wide) in paragraph at lines 10010--10014 []@textrm See [][]@texttt https:// gcc. gnu. org/ onlinedocs/ gcc-10. 1. 0/ gcc/ Static-Analyzer-Options. Overfull \hbox (72.42863pt too wide) in paragraph at lines 10033--10033 []@texttt Fortran runtime error: Index 1 of dimension 1 of array x above upper bound of 0[] [130] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10078--10078 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl assi,[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10081--10081 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t( cu)),[] [131] Overfull \hbox (26.43913pt too wide) in paragraph at lines 10160--10160 []@texttt #5 0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9 698f98,[] [132] [133] [134] Underfull \hbox (badness 10000) in paragraph at lines 10403--10405 [][][]@smallrm See [][]@smalltt https:// svn. r-project. org/ R-dev-web/ t runk/ CRAN/ QA/ Simon/ R-build/ fixpathR[][]@smallrm : [135] Overfull \hbox (124.16682pt too wide) in paragraph at lines 10462--10462 []@texttt boot.f:61: warning: type of ddot does not match original declaration [-Wlto-type-mismatch][] Overfull \hbox (147.16158pt too wide) in paragraph at lines 10481--10481 []@texttt rkpk2.f:77:5: warning: type of dstup does not match original declaration [-Wlto-type-mismatch][] Overfull \hbox (141.41289pt too wide) in paragraph at lines 10492--10492 []@texttt reg.f:78:33: warning: type of dqrdc does not match original declaration [-Wlto-type-mismatch][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10512--10512 [] @tex ttt 1[] [136] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10521--10521 [] @tex ttt 1[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10522--10522 []@texttt Warning: Type mismatch in argument jpvt at (1); passed REAL(8) to INTEGER(4)[] Chapter 5 [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] Overfull \hbox (30.87428pt too wide) in paragraph at lines 11338--11338 [] @texttt double *w, int *iper, double *span, double *al pha,[] Overfull \hbox (51.66371pt too wide) in paragraph at lines 11402--11402 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [148] [149] Overfull \hbox (60.93126pt too wide) in paragraph at lines 11566--11566 [] @texttt na_omit_xts_func fun = (na_omit_xts_func) R_GetCCallable("xts", "n a_omit_xts");[] [150] [151] [152] [153] [154] [155] Overfull \hbox (37.93651pt too wide) in paragraph at lines 12000--12000 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12860--12860 [] @texttt if(ign == NA_LOGICAL) error(" ignore_quotes must be TRUE or FALSE");[] [167] Underfull \hbox (badness 10000) in paragraph at lines 13010--13014 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [168] [169] [170] [171] [172] [173] [174] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13573--13573 [] @texttt // a version with (too) much PROTECT()ion .. "better safe than s orry"[] [175] [176] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13697--13697 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] [177] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13702--13702 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13757--13757 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13770--13770 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] [178] Overfull \hbox (26.43913pt too wide) in paragraph at lines 13869--13869 [] @texttt cmdexpr = PROTECT(R_ParseVector(cmdSexp, -1, &status, R_NilV alue));[] [179] [180] Overfull \hbox (14.94176pt too wide) in paragraph at lines 14018--14018 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one xit);[] [181] Overfull \hbox (43.6852pt too wide) in paragraph at lines 14108--14108 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [182] [183] Overfull \hbox (72.42863pt too wide) in paragraph at lines 14203--14203 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE _ANY} cetype_t;[] Chapter 6 [184] [185] [186] [187] [188] [189] [190] [191] [192] Overfull \hbox (20.69044pt too wide) in paragraph at lines 15003--15003 [] @texttt call cmsg(msg//c_null_char) ! need to concatenate a nul term inator[] Underfull \hbox (badness 10000) in paragraph at lines 15021--15026 @texttt com/ content/ www/ us/ en/ docs/ fortran-compiler/ developer-gui de-reference/ [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] Underfull \hbox (badness 10000) in paragraph at lines 15748--15752 []@texttt R_orderVector()[] @textrm cor-re-sponds to R's @texttt order(..., na .last, decreasing)[]@textrm . [203] Warning: unbalanced parentheses in @def... [204] [205] Overfull \hbox (26.43913pt too wide) in paragraph at lines 15971--15971 [] @texttt void (*clean)(void *data, Rboolean jump), void *cdata,[] [206] [207] [208] [209] [210] Chapter 7 [211] [212] Chapter 8 [213] [214] [215] Overfull \hbox (43.6852pt too wide) in paragraph at lines 16731--16731 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [216] Overfull \hbox (20.69044pt too wide) in paragraph at lines 16774--16774 []@texttt extern int (*ptr_R_ReadConsole)(const char *, unsigned char *, int, int);[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 16789--16789 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [217] [218] [219] [220] [221] [222] [223] [224] [225] (Function and variable index) [226] (/<>/doc/manual/R-exts.vrs [227] [228] [229] [230]) (Concept index) [231] (/<>/doc/manual/R-exts.cps [232]) [233] ) (see the transcript file for additional information) Output written on R-exts.pdf (240 pages, 1048195 bytes). Transcript written on R-exts.log. This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-exts.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-exts.toc) (/<>/doc/manual/R-exts.toc [-1] [-2] [-3] [-4]) [-5] (/<>/doc/manual/R-exts.toc) (/<>/doc/manual/R-exts.toc) (Acknowledgements) (/<>/doc/manual/R-exts.aux) Chapter 1 [1] Writing index file R-exts.cp [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 499--502 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] Underfull \hbox (badness 10000) in paragraph at lines 1301--1302 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1302--1303 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1305--1307 @texttt R_MAKEVARS_USER[]@textrm , @texttt ~/.R/Makevars- Underfull \hbox (badness 10000) in paragraph at lines 1307--1309 @texttt ~/.R/Makevars.win64[]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 1315--1316 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1316--1317 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1319--1321 @texttt R_MAKEVARS_USER[]@textrm , @texttt ~/.R/Makevars- Underfull \hbox (badness 10000) in paragraph at lines 1321--1323 @texttt ~/.R/Makevars.win64[]@textrm , [17] [18] [19] [20] Overfull \hbox (95.42339pt too wide) in paragraph at lines 1586--1586 [] @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec" , "--no-test-load")[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 1587--1587 [] @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL , quiet = TRUE)[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 1588--1588 [] @texttt res[z] <- file.size(file.path(lib, pkg_name, "data", "Rdata. rdb"))[] Underfull \hbox (badness 10000) in paragraph at lines 1619--1626 @texttt org/ package=amap[]@textrm )[]), Python or Tcl ([][]@textbf Simile @te xtrm (@texttt https:// CRAN. R-project. org/ [21] [22] [23] [24] [25] [26] Overfull \hbox (32.18782pt too wide) in paragraph at lines 2025--2025 []@texttt $ pkg-config --exists libtiff-4 >= 4.1.0 --print-errors # check the status[] [27] [28] [29] Overfull \hbox (14.94176pt too wide) in paragraph at lines 2265--2265 []@texttt SLAMC_FFLAGS=$(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(SAFE_FF LAGS)[] [30] [31] [32] [33] [34] Overfull \hbox (67.78206pt too wide) in paragraph at lines 2668--2668 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (53.60722pt too wide) in paragraph at lines 2670--2670 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [35] [36] Overfull \hbox (16.92342pt too wide) in paragraph at lines 2808--2808 []@smalltt dnl for 64-bit ODBC need SQL[U]LEN, and it is unclear where they ar e defined.[] [37] [38] Underfull \hbox (badness 7221) in paragraph at lines 2995--3001 [][][]@smallrm See [][]@smalltt https:// isocpp. org/ std/ standing-documen ts/ sd-6-sg10-feature-test-recommendations[][] @smallrm or [39] Overfull \hbox (60.93126pt too wide) in paragraph at lines 3070--3070 [] @texttt CXX="$(CXX17) $(CXX17STD)" CXXFLAGS="$(CXX17FLAGS) $(CXX 17PICFLAGS)")[] [40] [41] [42] [43] Overfull \hbox (43.6852pt too wide) in paragraph at lines 3314--3314 []@texttt if test -z "$CMAKE"; then CMAKE=/Applications/CMake.app/Contents/bin /cmake; fi[] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] Overfull \hbox (20.69044pt too wide) in paragraph at lines 4718--4718 []@texttt importFrom("stats", approx, optim, pchisq, predict, qchisq, qnorm, s pline)[] [61] [62] [63] Overfull \hbox (81.29893pt too wide) in paragraph at lines 4945--4945 [] @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB ILITY)" \[] Overfull \hbox (59.61772pt too wide) in paragraph at lines 4964--4964 []@texttt CXXFLAGS = ^^R"${RBIN}" CMD config CXXFLAGS^^R ^^R"${RBIN}" CMD conf ig CXXPICFLAGS^^R[] [64] [65] [66] [67] [68] [69] Overfull \hbox (53.86903pt too wide) in paragraph at lines 5414--5414 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (48.12035pt too wide) in paragraph at lines 5416--5416 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (65.36641pt too wide) in paragraph at lines 5417--5417 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Overfull \hbox (76.86378pt too wide) in paragraph at lines 5432--5432 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] [70] [71] [72] [73] [74] Overfull \hbox (14.94176pt too wide) in paragraph at lines 5804--5804 []@texttt "latin1=en_US:latin2=pl_PL:UTF-8=en_US.UTF-8:latin9=fr_FR.iso885915@ euro"[] [75] [76] Underfull \hbox (badness 10000) in paragraph at lines 5966--5969 @texttt gcc/ C-Extensions. html[][] @textrm and [][]@texttt https:// gcc. gnu. org/ onlinedocs/ gcc/ [77] Overfull \hbox (19.3769pt too wide) in paragraph at lines 6044--6044 []@texttt abs acos atan bind calloc ceil div exp fabs floor fmod free log mall oc[] [78] [79] Overfull \hbox (53.86903pt too wide) in paragraph at lines 6197--6197 []@texttt register storage class specifier is deprecated and incompatible with C++17[] [80] Overfull \hbox (13.62822pt too wide) in paragraph at lines 6253--6253 []@texttt #if defined (__unix__) || (defined (__APPLE__) && defined (__MACH__) )[] [81] Overfull \hbox (48.12035pt too wide) in paragraph at lines 6324--6324 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS: kdenestmlcvb :: kdenestmlcvb[] Overfull \hbox (25.1256pt too wide) in paragraph at lines 6336--6336 []@texttt warning: argument 1 value 18446744073709551615 exceeds maximum object[] Underfull \hbox (badness 10000) in paragraph at lines 6358--6359 [][][]@smallrm See [][]@smalltt https:// prereleases. llvm. org/ 11. 0. 0 / rc2/ tools/ clang/ docs/ ReleaseNotes. html# [82] [83] [84] [85] [86] Overfull \hbox (19.3769pt too wide) in paragraph at lines 6758--6758 []@texttt #define dngettext(pkg, String, StringP, N) (N == 1 ? String : String P)[] [87] [88] [89] Chapter 2 [90] [91] [92] [93] [94] [95] [96] [97] [98] [99] [100] [101] [102] [103] Underfull \hbox (badness 10000) in paragraph at lines 8027--8034 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [104] [105] [106] [107] [108] [109] Chapter 3 [110] [111] [112] [113] [114] Overfull \hbox (20.69044pt too wide) in paragraph at lines 8926--8926 [] @texttt as.integer(runif(N, 1, 12)), as.integer(runif(N, 1, 28)))[] [115] [116] Chapter 4 [117] [118] [119] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9251--9251 []@texttt evaluation nested too deeply: infinite recursion / options(expressio ns=)?[] [120] Overfull \hbox (25.25755pt too wide) in paragraph at lines 9292--9292 []@smalltt Message: Error: no valid set of coefficients has been found: pleas e supply starting values[] [121] Overfull \hbox (20.53261pt too wide) in paragraph at lines 9396--9396 []@smalltt debugging in: glm.fit(x = X, y = Y, weights = weights, start = star t, etastart = etastart,[] Overfull \hbox (38.96663pt too wide) in paragraph at lines 9426--9435 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. @texttt debug(stats:::predict.Arima)[]@textrm . [122] [123] [124] [125] Underfull \hbox (badness 10000) in paragraph at lines 9699--9711 @texttt controlling-code-generation[][]@textrm , [][]@texttt https:// clang. llvm. org/ docs/ AddressSanitizer. Overfull \hbox (48.90796pt too wide) in paragraph at lines 9715--9716 [][][]@smallrm see [][]@smalltt https:// llvm. org/ devmtg/ 2014-04/ PDFs/ LightningTalks/ EuroLLVM%202014%20--%20container%20overflow. [126] [127] Overfull \hbox (78.17732pt too wide) in paragraph at lines 9854--9854 []@texttt setenv ASAN_OPTIONS alloc_dealloc_mismatch=0:detect_leaks=0:detect_odr_violation=0 [] Overfull \hbox (29.50735pt too wide) in paragraph at lines 9887--9889 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by @t exttt -fsanitize=undefined,address[] [128] Underfull \hbox (badness 10000) in paragraph at lines 9975--9979 [][]@texttt https:// blog. llvm. org/ 2011/ 05/ what-every-c-programmer-s hould-know. html[][] [129] Overfull \hbox (2.03816pt too wide) in paragraph at lines 10010--10014 []@textrm See [][]@texttt https:// gcc. gnu. org/ onlinedocs/ gcc-10. 1. 0/ gcc/ Static-Analyzer-Options. Overfull \hbox (72.42863pt too wide) in paragraph at lines 10033--10033 []@texttt Fortran runtime error: Index 1 of dimension 1 of array x above upper bound of 0[] [130] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10078--10078 [] @texttt 2: possibleExtends(class(sloti), classi, ClassDef2 = getClassDef(cl assi,[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10081--10081 [] @texttt 4: stopifnot(validObject(cu <- as(tu, "dtCMatrix")), validObject(t( cu)),[] [131] Overfull \hbox (26.43913pt too wide) in paragraph at lines 10160--10160 []@texttt #5 0xb7d6c0a5 in do_random2 (call=0x94bf7d4, op=0x92580e8, args=0x9 698f98,[] [132] [133] [134] Underfull \hbox (badness 10000) in paragraph at lines 10403--10405 [][][]@smallrm See [][]@smalltt https:// svn. r-project. org/ R-dev-web/ t runk/ CRAN/ QA/ Simon/ R-build/ fixpathR[][]@smallrm : [135] Overfull \hbox (124.16682pt too wide) in paragraph at lines 10462--10462 []@texttt boot.f:61: warning: type of ddot does not match original declaration [-Wlto-type-mismatch][] Overfull \hbox (147.16158pt too wide) in paragraph at lines 10481--10481 []@texttt rkpk2.f:77:5: warning: type of dstup does not match original declaration [-Wlto-type-mismatch][] Overfull \hbox (141.41289pt too wide) in paragraph at lines 10492--10492 []@texttt reg.f:78:33: warning: type of dqrdc does not match original declaration [-Wlto-type-mismatch][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10512--10512 [] @tex ttt 1[] [136] Overfull \hbox (14.94176pt too wide) in paragraph at lines 10521--10521 [] @tex ttt 1[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10522--10522 []@texttt Warning: Type mismatch in argument jpvt at (1); passed REAL(8) to INTEGER(4)[] Chapter 5 [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] Overfull \hbox (30.87428pt too wide) in paragraph at lines 11338--11338 [] @texttt double *w, int *iper, double *span, double *al pha,[] Overfull \hbox (51.66371pt too wide) in paragraph at lines 11402--11402 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [148] [149] Overfull \hbox (60.93126pt too wide) in paragraph at lines 11566--11566 [] @texttt na_omit_xts_func fun = (na_omit_xts_func) R_GetCCallable("xts", "n a_omit_xts");[] [150] [151] [152] [153] [154] [155] Overfull \hbox (37.93651pt too wide) in paragraph at lines 12000--12000 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12860--12860 [] @texttt if(ign == NA_LOGICAL) error(" ignore_quotes must be TRUE or FALSE");[] [167] Underfull \hbox (badness 10000) in paragraph at lines 13010--13014 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [168] [169] [170] [171] [172] [173] [174] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13573--13573 [] @texttt // a version with (too) much PROTECT()ion .. "better safe than s orry"[] [175] [176] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13697--13697 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] [177] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13702--13702 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13757--13757 [] @texttt gradient = PROTECT(allocMatrix(REALSXP, LENGTH(ans), LENGTH(thet a)));[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13770--13770 [] @texttt for(i = 0, start = 0; i < LENGTH(theta); i++, start += LENGTH(an s)) {[] [178] Overfull \hbox (26.43913pt too wide) in paragraph at lines 13869--13869 [] @texttt cmdexpr = PROTECT(R_ParseVector(cmdSexp, -1, &status, R_NilV alue));[] [179] [180] Overfull \hbox (14.94176pt too wide) in paragraph at lines 14018--14018 []@texttt void R_RegisterCFinalizerEx(SEXP s, R_CFinalizer_t fun, Rboolean one xit);[] [181] Overfull \hbox (43.6852pt too wide) in paragraph at lines 14108--14108 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [182] [183] Overfull \hbox (72.42863pt too wide) in paragraph at lines 14203--14203 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE _ANY} cetype_t;[] Chapter 6 [184] [185] [186] [187] [188] [189] [190] [191] [192] Overfull \hbox (20.69044pt too wide) in paragraph at lines 15003--15003 [] @texttt call cmsg(msg//c_null_char) ! need to concatenate a nul term inator[] Underfull \hbox (badness 10000) in paragraph at lines 15021--15026 @texttt com/ content/ www/ us/ en/ docs/ fortran-compiler/ developer-gui de-reference/ [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] Underfull \hbox (badness 10000) in paragraph at lines 15748--15752 []@texttt R_orderVector()[] @textrm cor-re-sponds to R's @texttt order(..., na .last, decreasing)[]@textrm . [203] Warning: unbalanced parentheses in @def... [204] [205] Overfull \hbox (26.43913pt too wide) in paragraph at lines 15971--15971 [] @texttt void (*clean)(void *data, Rboolean jump), void *cdata,[] [206] [207] [208] [209] [210] Chapter 7 [211] [212] Chapter 8 [213] [214] [215] Overfull \hbox (43.6852pt too wide) in paragraph at lines 16731--16731 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [216] Overfull \hbox (20.69044pt too wide) in paragraph at lines 16774--16774 []@texttt extern int (*ptr_R_ReadConsole)(const char *, unsigned char *, int, int);[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 16789--16789 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [217] [218] [219] [220] [221] [222] [223] [224] [225] (Function and variable index) [226] (/<>/doc/manual/R-exts.vrs [227] [228] [229] [230]) (Concept index) [231] (/<>/doc/manual/R-exts.cps [232]) [233] ) (see the transcript file for additional information) Output written on R-exts.pdf (240 pages, 1048165 bytes). Transcript written on R-exts.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-intro.texi @setfilename R-intro.info This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-intro.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Preface) Cross reference values unknown; you must run TeX again. Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13] [14] [15] Chapter 4 [16] [17] Chapter 5 [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] Chapter 6 [28] [29] [30] [31] Chapter 7 [32] [33] [34] Chapter 8 [35] [36] [37] >/doc/manual/images/h ist.pdf> >/doc/manual/images/ecdf.pdf> [38] >/doc/manual/images/QQ.pdf> [39] [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] Chapter 11 [54] [55] [56] [57] [58] [59] [60] Underfull \hbox (badness 10000) in paragraph at lines 4849--4851 @texttt logit[]@textrm , @texttt probit[]@textrm , @texttt cloglog[]@textrm , @texttt identity[]@textrm , [61] [62] [63] [64] [65] Underfull \hbox (badness 10000) in paragraph at lines 5264--5274 [][]@textbf Mixed mod-els. @textrm The rec-om-mended [][]@textbf nlme @textrm (@texttt https:// CRAN. R-project. org/ [66] Chapter 12 [67] [68] [69] [70] [71] Overfull \hbox (26.43913pt too wide) in paragraph at lines 5744--5744 []@texttt > text(x, y, expression(paste(bgroup("(", atop(n, x), ")"), p^x, q^{ n-x})))[] [72] [73] [74] [75] [76] >/doc/manual/images/f ig11.pdf> [77] >/doc/manual/images/fig12.pdf> [78] [79] [80] [81] Chapter 13 [82] Underfull \hbox (badness 10000) in paragraph at lines 6450--6455 []@textrm Users con-nected to the In-ter-net can use the @texttt install.packag es()[] @textrm and [83] Chapter 14 [84] [85] Underfull \hbox (badness 10000) in paragraph at lines 6651--6656 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and [86] Appendix A [87] [88] [89] [90] Appendix B [91] [92] [93] [94] [95] [96] [97] [98] Appendix C [99] [100] Appendix D [101] No file R-intro.vrs. Appendix E [102] No file R-intro.cps. Appendix F [103] [104] ) (see the transcript file for additional information) Output written on R-intro.pdf (107 pages, 572797 bytes). Transcript written on R-intro.log. This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-intro.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-intro.toc) (/<>/doc/manual/R-intro.toc [-1] [-2] [-3]) [-4] (/<>/doc/manual/R-intro.toc) (/<>/doc/manual/R-intro.toc) (Preface) (/<>/doc/manual/R-intro.aux) Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13] [14] [15] Chapter 4 [16] [17] Chapter 5 [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] Chapter 6 [28] [29] [30] [31] Chapter 7 [32] [33] [34] Chapter 8 [35] [36] [37] >/doc/manual/images/h ist.pdf> >/doc/manual/images/ecdf.pdf> [38] >/doc/manual/images/QQ.pdf> [39] [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] Chapter 11 [54] [55] [56] [57] [58] [59] [60] Underfull \hbox (badness 10000) in paragraph at lines 4849--4851 @texttt logit[]@textrm , @texttt probit[]@textrm , @texttt cloglog[]@textrm , @texttt identity[]@textrm , [61] [62] [63] [64] [65] Underfull \hbox (badness 10000) in paragraph at lines 5264--5274 [][]@textbf Mixed mod-els. @textrm The rec-om-mended [][]@textbf nlme @textrm (@texttt https:// CRAN. R-project. org/ [66] Chapter 12 [67] [68] [69] [70] [71] Overfull \hbox (26.43913pt too wide) in paragraph at lines 5744--5744 []@texttt > text(x, y, expression(paste(bgroup("(", atop(n, x), ")"), p^x, q^{ n-x})))[] [72] [73] [74] [75] [76] >/doc/manual/images/f ig11.pdf> [77] >/doc/manual/images/fig12.pdf> [78] [79] [80] [81] Chapter 13 [82] Underfull \hbox (badness 10000) in paragraph at lines 6450--6455 []@textrm Users con-nected to the In-ter-net can use the @texttt install.packag es()[] @textrm and [83] Chapter 14 [84] [85] Underfull \hbox (badness 10000) in paragraph at lines 6651--6656 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and [86] Appendix A [87] [88] [89] [90] Appendix B [91] [92] [93] [94] [95] [96] [97] [98] Appendix C [99] [100] Appendix D [101] (/<>/doc/manual/R-intro.vrs [102] [103]) Appendix E [104] (/<>/doc/manual/R-intro.cps [105]) Appendix F [106] [107] ) (see the transcript file for additional information) Output written on R-intro.pdf (113 pages, 624454 bytes). Transcript written on R-intro.log. This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-intro.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-intro.toc) (/<>/doc/manual/R-intro.toc [-1] [-2] [-3]) [-4] (/<>/doc/manual/R-intro.toc) (/<>/doc/manual/R-intro.toc) (Preface) (/<>/doc/manual/R-intro.aux) Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] [12] Chapter 3 [13] [14] [15] Chapter 4 [16] [17] Chapter 5 [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] Chapter 6 [28] [29] [30] [31] Chapter 7 [32] [33] [34] Chapter 8 [35] [36] [37] >/doc/manual/images/h ist.pdf> >/doc/manual/images/ecdf.pdf> [38] >/doc/manual/images/QQ.pdf> [39] [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] Chapter 11 [54] [55] [56] [57] [58] [59] [60] Underfull \hbox (badness 10000) in paragraph at lines 4849--4851 @texttt logit[]@textrm , @texttt probit[]@textrm , @texttt cloglog[]@textrm , @texttt identity[]@textrm , [61] [62] [63] [64] [65] Underfull \hbox (badness 10000) in paragraph at lines 5264--5274 [][]@textbf Mixed mod-els. @textrm The rec-om-mended [][]@textbf nlme @textrm (@texttt https:// CRAN. R-project. org/ [66] Chapter 12 [67] [68] [69] [70] [71] Overfull \hbox (26.43913pt too wide) in paragraph at lines 5744--5744 []@texttt > text(x, y, expression(paste(bgroup("(", atop(n, x), ")"), p^x, q^{ n-x})))[] [72] [73] [74] [75] [76] >/doc/manual/images/f ig11.pdf> [77] >/doc/manual/images/fig12.pdf> [78] [79] [80] [81] Chapter 13 [82] Underfull \hbox (badness 10000) in paragraph at lines 6450--6455 []@textrm Users con-nected to the In-ter-net can use the @texttt install.packag es()[] @textrm and [83] Chapter 14 [84] [85] Underfull \hbox (badness 10000) in paragraph at lines 6651--6656 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and [86] Appendix A [87] [88] [89] [90] Appendix B [91] [92] [93] [94] [95] [96] [97] [98] Appendix C [99] [100] Appendix D [101] (/<>/doc/manual/R-intro.vrs [102] [103]) Appendix E [104] (/<>/doc/manual/R-intro.cps [105]) Appendix F [106] [107] ) (see the transcript file for additional information) Output written on R-intro.pdf (113 pages, 624468 bytes). Transcript written on R-intro.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-ints.texi @setfilename R-ints.info This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-ints.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] Overfull \hbox (49.43388pt too wide) in paragraph at lines 1499--1499 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 1500--1500 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 1501--1501 [] @texttt length(meth.Ops <- nM$^^R.__T__Ops:base^^R) # 71 methods for the Ops (group)generic[] Overfull \hbox (158.65895pt too wide) in paragraph at lines 1502--1502 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [19] [20] [21] [22] [23] [24] Chapter 2 [25] Overfull \hbox (26.43913pt too wide) in paragraph at lines 2020--2020 [] @texttt if (!is.character(x)) x <- structure(as.character(x), names = na mes(x))[] [26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34] Chapter 6 [35] [36] [37] [38] [39] [40] Underfull \hbox (badness 10000) in paragraph at lines 3132--3138 []@textrm The @texttt glyphs[] @textrm com-po-nent re-ports whether ren-der-in g glyphs (e.g., via [41] [42] [43] [44] [45] [46] [47] [48] Chapter 7 [49] Underfull \hbox (badness 10000) in paragraph at lines 3786--3795 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, Underfull \hbox (badness 10000) in paragraph at lines 3786--3795 @texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib/libR.dyl ib[]@textrm , [50] Overfull \hbox (16.81319pt too wide) in paragraph at lines 3837--3841 []@textrm The de-fault path for a per-sonal li-brary di-rec-tory is set as @te xttt ~/Library/R/arch/x.y/library[]@textrm . Chapter 8 [51] [52] [53] [54] [55] Underfull \hbox (badness 10000) in paragraph at lines 4162--4170 []@textrm A string with comma-separated @textttsl name@texttt =@textttsl value [] @textrm pairs (with @textsl value[] @textrm a Underfull \hbox (badness 10000) in paragraph at lines 4162--4170 @textrm log-i-cal con-stant) giv-ing ad-di-tional ar-gu-ments for the [][]@tex tbf codetools Underfull \hbox (badness 10000) in paragraph at lines 4162--4170 @textrm (@texttt https:// CRAN. R-project. org/ package=codetools[]@textrm )[] func-tions used Underfull \hbox (badness 10000) in paragraph at lines 4162--4170 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa tchArgs = FALSE[] @textrm and [56] [57] [58] [59] [60] [61] Underfull \hbox (badness 10000) in paragraph at lines 4534--4539 @texttt blog. r-project. org/ 2022/ 04/ 08/ enhancements-to-html-documen tation/ [62] [63] [64] Chapter 9 [65] [66] Chapter 10 [67] Chapter 11 [68] Chapter 12 [69] [70] (Function and variable index) [71] [72] No file R-ints.vrs. (Concept index) [73] No file R-ints.cps. [74] ) (see the transcript file for additional information) Output written on R-ints.pdf (77 pages, 417135 bytes). Transcript written on R-ints.log. This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-ints.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-ints.toc) (/<>/doc/manual/R-ints.toc [-1] [-2]) [-3] (/<>/doc/manual/R-ints.toc) (/<>/doc/manual/R-ints.toc) Chapter 1 (/<>/doc/manual/R-ints.aux) Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] Overfull \hbox (49.43388pt too wide) in paragraph at lines 1499--1499 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 1500--1500 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 1501--1501 [] @texttt length(meth.Ops <- nM$^^R.__T__Ops:base^^R) # 71 methods for the Ops (group)generic[] Overfull \hbox (158.65895pt too wide) in paragraph at lines 1502--1502 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [19] [20] [21] [22] [23] [24] Chapter 2 [25] Overfull \hbox (26.43913pt too wide) in paragraph at lines 2020--2020 [] @texttt if (!is.character(x)) x <- structure(as.character(x), names = na mes(x))[] [26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34] Chapter 6 [35] [36] [37] [38] [39] [40] Underfull \hbox (badness 10000) in paragraph at lines 3132--3138 []@textrm The @texttt glyphs[] @textrm com-po-nent re-ports whether ren-der-in g glyphs (e.g., via [41] [42] [43] [44] [45] [46] [47] [48] Chapter 7 [49] Underfull \hbox (badness 10000) in paragraph at lines 3786--3795 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, Underfull \hbox (badness 10000) in paragraph at lines 3786--3795 @texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib/libR.dyl ib[]@textrm , [50] Overfull \hbox (16.81319pt too wide) in paragraph at lines 3837--3841 []@textrm The de-fault path for a per-sonal li-brary di-rec-tory is set as @te xttt ~/Library/R/arch/x.y/library[]@textrm . Chapter 8 [51] [52] [53] [54] [55] Underfull \hbox (badness 10000) in paragraph at lines 4162--4170 []@textrm A string with comma-separated @textttsl name@texttt =@textttsl value [] @textrm pairs (with @textsl value[] @textrm a Underfull \hbox (badness 10000) in paragraph at lines 4162--4170 @textrm log-i-cal con-stant) giv-ing ad-di-tional ar-gu-ments for the [][]@tex tbf codetools Underfull \hbox (badness 10000) in paragraph at lines 4162--4170 @textrm (@texttt https:// CRAN. R-project. org/ package=codetools[]@textrm )[] func-tions used Underfull \hbox (badness 10000) in paragraph at lines 4162--4170 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa tchArgs = FALSE[] @textrm and [56] [57] [58] [59] [60] [61] Underfull \hbox (badness 10000) in paragraph at lines 4534--4539 @texttt blog. r-project. org/ 2022/ 04/ 08/ enhancements-to-html-documen tation/ [62] [63] [64] Chapter 9 [65] [66] Chapter 10 [67] Chapter 11 [68] Chapter 12 [69] [70] (Function and variable index) [71] [72] (/<>/doc/manual/R-ints.vrs [73] [74]) (Concept index) [75] (/<>/doc/manual/R-ints.cps) [76] ) (see the transcript file for additional information) Output written on R-ints.pdf (81 pages, 465467 bytes). Transcript written on R-ints.log. This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-ints.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-ints.toc) (/<>/doc/manual/R-ints.toc [-1] [-2]) [-3] (/<>/doc/manual/R-ints.toc) (/<>/doc/manual/R-ints.toc) Chapter 1 (/<>/doc/manual/R-ints.aux) Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] Overfull \hbox (49.43388pt too wide) in paragraph at lines 1499--1499 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 1500--1500 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 1501--1501 [] @texttt length(meth.Ops <- nM$^^R.__T__Ops:base^^R) # 71 methods for the Ops (group)generic[] Overfull \hbox (158.65895pt too wide) in paragraph at lines 1502--1502 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [19] [20] [21] [22] [23] [24] Chapter 2 [25] Overfull \hbox (26.43913pt too wide) in paragraph at lines 2020--2020 [] @texttt if (!is.character(x)) x <- structure(as.character(x), names = na mes(x))[] [26] [27] [28] [29] Chapter 3 [30] [31] Chapter 4 [32] [33] Chapter 5 [34] Chapter 6 [35] [36] [37] [38] [39] [40] Underfull \hbox (badness 10000) in paragraph at lines 3132--3138 []@textrm The @texttt glyphs[] @textrm com-po-nent re-ports whether ren-der-in g glyphs (e.g., via [41] [42] [43] [44] [45] [46] [47] [48] Chapter 7 [49] Underfull \hbox (badness 10000) in paragraph at lines 3786--3795 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, Underfull \hbox (badness 10000) in paragraph at lines 3786--3795 @texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib/libR.dyl ib[]@textrm , [50] Overfull \hbox (16.81319pt too wide) in paragraph at lines 3837--3841 []@textrm The de-fault path for a per-sonal li-brary di-rec-tory is set as @te xttt ~/Library/R/arch/x.y/library[]@textrm . Chapter 8 [51] [52] [53] [54] [55] Underfull \hbox (badness 10000) in paragraph at lines 4162--4170 []@textrm A string with comma-separated @textttsl name@texttt =@textttsl value [] @textrm pairs (with @textsl value[] @textrm a Underfull \hbox (badness 10000) in paragraph at lines 4162--4170 @textrm log-i-cal con-stant) giv-ing ad-di-tional ar-gu-ments for the [][]@tex tbf codetools Underfull \hbox (badness 10000) in paragraph at lines 4162--4170 @textrm (@texttt https:// CRAN. R-project. org/ package=codetools[]@textrm )[] func-tions used Underfull \hbox (badness 10000) in paragraph at lines 4162--4170 @textrm to us-ing @texttt skipWith = TRUE[]@textrm , @texttt suppressPartialMa tchArgs = FALSE[] @textrm and [56] [57] [58] [59] [60] [61] Underfull \hbox (badness 10000) in paragraph at lines 4534--4539 @texttt blog. r-project. org/ 2022/ 04/ 08/ enhancements-to-html-documen tation/ [62] [63] [64] Chapter 9 [65] [66] Chapter 10 [67] Chapter 11 [68] Chapter 12 [69] [70] (Function and variable index) [71] [72] (/<>/doc/manual/R-ints.vrs [73] [74]) (Concept index) [75] (/<>/doc/manual/R-ints.cps) [76] ) (see the transcript file for additional information) Output written on R-ints.pdf (81 pages, 465470 bytes). Transcript written on R-ints.log. TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-lang.texi @setfilename R-lang.info This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-lang.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Writing index file R-lang.cp Chapter 2 [1] [2] Cross reference values unknown; you must run TeX again. Overfull \hbox (8.41086pt too wide) in paragraph at lines 294--295 @textbf storage.mode| [3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] Chapter 5 [28] [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] Chapter 7 [44] [45] Chapter 8 [46] [47] Chapter 9 [48] [49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58] (Function and Variable Index) [59] No file R-lang.vrs. (Concept Index) [60] No file R-lang.cps. Appendix A [61] [62] ) (see the transcript file for additional information) Output written on R-lang.pdf (65 pages, 343487 bytes). Transcript written on R-lang.log. This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-lang.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-lang.toc) (/<>/doc/manual/R-lang.toc [-1] [-2]) [-3] [-4] (/<>/doc/manual/R-lang.toc) (/<>/doc/manual/R-lang.toc) Chapter 1 (/<>/doc/manual/R-lang.aux) Writing index file R-lang.cp Chapter 2 [1] [2] Overfull \hbox (8.41086pt too wide) in paragraph at lines 294--295 @textbf storage.mode| [3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] Chapter 5 [28] [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] Chapter 7 [44] [45] Chapter 8 [46] [47] Chapter 9 [48] [49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58] (Function and Variable Index) [59] (/<>/doc/manual/R-lang.vrs [60]) (Concept Index) [61] (/<>/doc/manual/R-lang.cps) [62] Appendix A [63] [64] ) (see the transcript file for additional information) Output written on R-lang.pdf (70 pages, 386011 bytes). Transcript written on R-lang.log. This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/<>/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi (/usr/share/texmf/tex/texinfo/texinfo.tex Loading texinfo [version 2023-09-19.19]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/<>/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-lang.vr (/<>/doc/manual/R-defs.texi (/usr/share/texmf/tex/texinfo/txi-en.tex)) (/<>/doc/manual/version.texi) [1{/var/lib/texmf/f onts/map/pdftex/updmap/pdftex.map}] [2] (/<>/doc/manual/R-lang.toc) (/<>/doc/manual/R-lang.toc [-1] [-2]) [-3] [-4] (/<>/doc/manual/R-lang.toc) (/<>/doc/manual/R-lang.toc) Chapter 1 (/<>/doc/manual/R-lang.aux) Writing index file R-lang.cp Chapter 2 [1] [2] Overfull \hbox (8.41086pt too wide) in paragraph at lines 294--295 @textbf storage.mode| [3] [4] [5] [6] [7] [8] Chapter 3 [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] Chapter 4 [24] [25] [26] [27] Chapter 5 [28] [29] [30] [31] [32] [33] [34] Chapter 6 [35] [36] [37] [38] [39] [40] [41] [42] [43] Chapter 7 [44] [45] Chapter 8 [46] [47] Chapter 9 [48] [49] [50] Chapter 10 [51] [52] [53] [54] [55] [56] [57] [58] (Function and Variable Index) [59] (/<>/doc/manual/R-lang.vrs [60]) (Concept Index) [61] (/<>/doc/manual/R-lang.cps) [62] Appendix A [63] [64] ) (see the transcript file for additional information) Output written on R-lang.pdf (70 pages, 386016 bytes). Transcript written on R-lang.log. installing R manuals in PDF format ... make[2]: Leaving directory '/<>/doc/manual' make[1]: Leaving directory '/<>' make prefix=/<>/debian/r-base-core/usr \ infodir=/<>/debian/r-base-core/usr/share/info install-info make[1]: Entering directory '/<>' make[2]: Entering directory '/<>/doc/manual' /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-FAQ.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-admin.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-data.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-exts.texi R-exts.texi:3839: warning: @noindent is useless inside of a paragraph R-exts.texi:15252: warning: unexpected argument on @tex line: $\pi :=$ @code{prob[]}, R-exts.texi:15252: warning: unexpected argument on @iftex line: @tex $\pi :=$ @code{prob[]}, @end tex /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-intro.texi R-intro.texi:6748: warning: @pxref should not appear on @item line /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-ints.texi /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-lang.texi mkdir -p -- /<>/debian/r-base-core/usr/share/info /usr/bin/install -c -m 644 "./dir" "/<>/debian/r-base-core/usr/share/info" installing R info pages ... updating '/<>/debian/r-base-core/usr/share/info/dir' ... you need to adjust /<>/debian/r-base-core/usr/share/info/dir manually you need to adjust /<>/debian/r-base-core/usr/share/info/dir manually you need to adjust /<>/debian/r-base-core/usr/share/info/dir manually you need to adjust /<>/debian/r-base-core/usr/share/info/dir manually you need to adjust /<>/debian/r-base-core/usr/share/info/dir manually you need to adjust /<>/debian/r-base-core/usr/share/info/dir manually you need to adjust /<>/debian/r-base-core/usr/share/info/dir manually make[2]: Leaving directory '/<>/doc/manual' make[1]: Leaving directory '/<>' dh_movefiles --sourcedir=debian/r-base-core -pr-doc-pdf dh_movefiles --sourcedir=debian/r-base-core -pr-doc-html gunzip -9v /<>/debian/r-base-core/usr/share/info/*.gz /<>/debian/r-base-core/usr/share/info/R-FAQ.info.gz: 67.4% -- replaced with /<>/debian/r-base-core/usr/share/info/R-FAQ.info /<>/debian/r-base-core/usr/share/info/R-admin.info.gz: 68.2% -- replaced with /<>/debian/r-base-core/usr/share/info/R-admin.info /<>/debian/r-base-core/usr/share/info/R-data.info.gz: 70.9% -- replaced with /<>/debian/r-base-core/usr/share/info/R-data.info /<>/debian/r-base-core/usr/share/info/R-exts.info-1.gz: 66.8% -- replaced with /<>/debian/r-base-core/usr/share/info/R-exts.info-1 /<>/debian/r-base-core/usr/share/info/R-exts.info-2.gz: 68.0% -- replaced with /<>/debian/r-base-core/usr/share/info/R-exts.info-2 /<>/debian/r-base-core/usr/share/info/R-exts.info-3.gz: 77.2% -- replaced with /<>/debian/r-base-core/usr/share/info/R-exts.info-3 /<>/debian/r-base-core/usr/share/info/R-exts.info.gz: 70.4% -- replaced with /<>/debian/r-base-core/usr/share/info/R-exts.info /<>/debian/r-base-core/usr/share/info/R-intro.info.gz: 70.4% -- replaced with /<>/debian/r-base-core/usr/share/info/R-intro.info /<>/debian/r-base-core/usr/share/info/R-ints.info.gz: 68.6% -- replaced with /<>/debian/r-base-core/usr/share/info/R-ints.info /<>/debian/r-base-core/usr/share/info/R-lang.info.gz: 71.9% -- replaced with /<>/debian/r-base-core/usr/share/info/R-lang.info dh_movefiles --sourcedir=debian/r-base-core -pr-doc-info rm -vf /<>/debian/r-doc-info/usr/share/info/dir \ /<>/debian/r-doc-info/usr/share/info/dir.old removed '/<>/debian/r-doc-info/usr/share/info/dir' touch install-indep-stamp dh_installdirs -pr-mathlib usr/include usr/lib \ usr/share/lintian/overrides \ usr/lib/pkgconfig dh_movefiles --sourcedir=debian/r-base-core -pr-mathlib (cd /<>/debian/r-mathlib/usr/lib; \ ls -l ; \ mv -v libRmath.so libRmath.so.1.0.0; \ ln -sv libRmath.so.1.0.0 libRmath.so.1; \ ln -sv libRmath.so.1 libRmath.so) total 2496 -rw-rw-r-- 1 root root 1698068 Dec 19 09:56 libRmath.a -rwxrwxr-x 1 root root 850368 Dec 19 09:56 libRmath.so drwxr-xr-x 2 root root 4096 Dec 19 09:58 pkgconfig renamed 'libRmath.so' -> 'libRmath.so.1.0.0' 'libRmath.so.1' -> 'libRmath.so.1.0.0' 'libRmath.so' -> 'libRmath.so.1' install -m 0644 src/include/Rmath.h \ /<>/debian/r-mathlib/usr/include install -m 0644 debian/Rprofile.site /<>/debian/r-base-core/etc/R install -m 0644 debian/Renviron.site /<>/debian/r-base-core/etc/R (cd /<>/debian/r-base-core/usr/lib/R/etc; \ mv Makeconf repositories ldpaths ../../../../etc/R/; \ mv Renviron Renviron.ucf; \ ln -s /etc/R/Makeconf .; \ ln -s /etc/R/Renviron .; \ ln -s /etc/R/Renviron.site .; \ ln -s /etc/R/Rprofile.site .; \ ln -s /etc/R/ldpaths .; \ ln -s /etc/R/repositories . ) dh_bash-completion # edd 12 Jan 2016 new location #install -m 0644 debian/R.bash-completion \ # debian/r-base-core/usr/share/bash-completion/completions/R (cd /<>/debian/r-base-core/usr/lib/; \ ln -sv R/lib/libR.so . ) './libR.so' -> 'R/lib/libR.so' (cd debian/icon-class-patch && munpack rlogo_icon.png.mpack) rlogo_icon.png (application/octet-stream) install -m 0644 debian/icon-class-patch/rlogo_icon.png \ debian/r-base-core/usr/share/icons/hicolor/48x48/apps install -m 0644 debian/icon-class-patch/Rlogo.svg \ debian/r-base-core/usr/share/icons/hicolor/scalable/apps/rlogo_icon.svg install -m 0644 debian/icon-class-patch/R.desktop \ debian/r-base-core/usr/share/applications rm debian/icon-class-patch/rlogo_icon.png touch install-arch-stamp *** binary-arch *** dh_testdir -a dh_testroot -a dh_installdocs -pr-base-core doc/NEWS.* README \ debian/README.Atlas \ debian/README.mathlib dh_installdocs -pr-mathlib doc/NEWS.* README \ debian/README.mathlib dh_installexamples -pr-mathlib src/nmath/standalone/test.c (cd /<>/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../R/doc .) (cd /<>/debian/r-base-core/usr/share/doc/r-base-core && ln -s ../../../lib/R/library .) install -p -m 0644 debian/r-base-core.lintian \ /<>/debian/r-base-core/usr/share/lintian/overrides/r-base-core install -p -m 0644 debian/r-recommended.lintian \ /<>/debian/r-recommended/usr/share/lintian/overrides/r-recommended install -p -m 0644 debian/r-mathlib.lintian \ /<>/debian/r-mathlib/usr/share/lintian/overrides/r-mathlib dh_installchangelogs -a -k doc/NEWS dh_strip -a 40aaa949a5989ab467b3714ef97e47ac2cc57a31 50d92b4063468b9403a6afd10c907eaa5228b915 1ea22bb88a84703e94d1c4c46f00a8439224a235 4226b4108dd1d673563a6b52a73eebeac34b0b78 ef21b70b76dcb02f150fd169c865a566ad143424 34b231a2d11dfefc40305a622e827c589a1a6f35 5cba65e5e53a98a63f6609883a3112cb04a7ece6 1f4b451a3a4529840c9e8ccb18e58a15114db831 996b0b090f193476333ce18b90a755ca6e2dec79 7d828d116248a4d1fec8a1159f91eaa124bb4f43 e1687a1e8561f853a0e42aa0cb775766e20e28a9 23188675822fa32d81bb9a886762cfd76ef8abc3 354b35211a84bd708e7e2adb9fd3a63c778da291 868c59e9399de7c7923efafcc6dc1b281d1822de c1a2361c5039fd8e3d710bd7a944180499ce47cd f31a00cb67e9c25517cde158e218c9469296cb1f 318f492d329f5012fc19c70cf690a1efe9bb0d9a b9a48b933f0b15859d9084de6000df5063529630 c3af838162ac7a13c11204e1acdf35de17894694 1ea22bb88a84703e94d1c4c46f00a8439224a235 dh_compress -a dh_fixperms -a dh_link -a dh_makeshlibs -a dh_installdeb -a dh_perl -a dh_shlibdeps -a -l /<>/debian/r-base-core/usr/lib/R/lib dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libtcl8.6.so' dpkg-shlibdeps: warning: can't extract name and version from library name 'libtk8.6.so' *** Getting graphics engine version from 'GraphicsEngine.h' header echo R_GE_version | cpp -I ./src/include/ -include R_ext/GraphicsEngine.h | tail -n1 | sed 's/^/graphicsengine:Version=/' >> debian/r-base-core.substvars dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing r-base-core (in debian/r-base-core); do_strip: , oemstrip: pkgstriptranslations: processing r-base-core-dbgsym (in debian/.debhelper/r-base-core/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing r-mathlib (in debian/r-mathlib); do_strip: , oemstrip: pkgstriptranslations: processing r-mathlib-dbgsym (in debian/.debhelper/r-mathlib/dbgsym-root); do_strip: , oemstrip: debian/r-base-core/usr/share/applications/R.desktop: does not have gettext domain, not stripping pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-base-core/DEBIAN/control, package r-base-core, directory debian/r-base-core .. removing usr/share/doc/r-base-core/changelog.gz pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-base-core ... xargs: warning: options --max-lines and --replace/-I/-i are mutually exclusive, ignoring previous --max-lines value WARNING: optipng failed on usr/lib/R/library/graphics/help/figures/oma.png, ignoring WARNING: optipng failed on usr/lib/R/library/graphics/help/figures/pch.png, ignoring WARNING: optipng failed on usr/lib/R/library/graphics/help/figures/mai.png, ignoring ..oooooooo pkgstripfiles: PNG optimization (8/0) for package r-base-core took 4 s dpkg-deb: building package 'r-base-core' in '../r-base-core_4.3.2-1build1_ppc64el.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/r-base-core/dbgsym-root/DEBIAN/control, package r-base-core-dbgsym, directory debian/.debhelper/r-base-core/dbgsym-root dpkg-deb: building package 'r-base-core-dbgsym' in 'debian/.debhelper/scratch-space/build-r-base-core/r-base-core-dbgsym_4.3.2-1build1_ppc64el.deb'. pkgstripfiles: processing control file: debian/r-mathlib/DEBIAN/control, package r-mathlib, directory debian/r-mathlib .. removing usr/share/doc/r-mathlib/changelog.gz pkgstripfiles: processing control file: debian/.debhelper/r-mathlib/dbgsym-root/DEBIAN/control, package r-mathlib-dbgsym, directory debian/.debhelper/r-mathlib/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-mathlib ... dpkg-deb: building package 'r-mathlib-dbgsym' in 'debian/.debhelper/scratch-space/build-r-mathlib/r-mathlib-dbgsym_4.3.2-1build1_ppc64el.deb'. pkgstripfiles: No PNG files. dpkg-deb: building package 'r-mathlib' in '../r-mathlib_4.3.2-1build1_ppc64el.deb'. Renaming r-mathlib-dbgsym_4.3.2-1build1_ppc64el.deb to r-mathlib-dbgsym_4.3.2-1build1_ppc64el.ddeb Renaming r-base-core-dbgsym_4.3.2-1build1_ppc64el.deb to r-base-core-dbgsym_4.3.2-1build1_ppc64el.ddeb dpkg-genbuildinfo --build=any -O../r-base_4.3.2-1build1_ppc64el.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../r-base_4.3.2-1build1_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-12-19T09:59:11Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-base_4.3.2-1build1_ppc64el.changes: ------------------------------------- Format: 1.8 Date: Tue, 19 Dec 2023 10:27:21 +0100 Source: r-base Binary: r-base-core r-mathlib Built-For-Profiles: noudeb Architecture: ppc64el Version: 4.3.2-1build1 Distribution: noble-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: r-base-core - GNU R core of statistical computation and graphics system r-mathlib - GNU R standalone mathematics library Changes: r-base (4.3.2-1build1) noble; urgency=medium . * No-change rebuild for ICU soname change. 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r-mathlib r-mathlib-dbgsym Architecture: ppc64el Version: 4.3.2-1build1 Checksums-Md5: e3c7dde803f09d3d4325685419a1a727 7563128 r-base-core-dbgsym_4.3.2-1build1_ppc64el.ddeb e5a1b48345bccb5869cb1dc206132924 27404464 r-base-core_4.3.2-1build1_ppc64el.deb 3134d40e2a912a8b6e3e9e52c3d497ef 225236 r-mathlib-dbgsym_4.3.2-1build1_ppc64el.ddeb 73e8c4cf47eb63e03eb02ea383da5359 2425456 r-mathlib_4.3.2-1build1_ppc64el.deb Checksums-Sha1: af8ba7aee396681f38b106a1ca6f79add1e12785 7563128 r-base-core-dbgsym_4.3.2-1build1_ppc64el.ddeb 1f412878f0d5b139cd6d6f6eb64db7a76ab28107 27404464 r-base-core_4.3.2-1build1_ppc64el.deb 256838d889f7cf88b43a7550ad76c74adc810747 225236 r-mathlib-dbgsym_4.3.2-1build1_ppc64el.ddeb a326c5d0900998a9372cad4c496f62db36b4cd1f 2425456 r-mathlib_4.3.2-1build1_ppc64el.deb Checksums-Sha256: 2b0163b2e93aa431811a976236e340db2acd7db85b312ce3843b23616f5e15bc 7563128 r-base-core-dbgsym_4.3.2-1build1_ppc64el.ddeb 6522963781292b8ffbfc6f24066601e6ba405800ee41cecec6f9d53faef62fae 27404464 r-base-core_4.3.2-1build1_ppc64el.deb 76badf3fb8da6f0e14ff2e21a52deedca9576cf04e961a63400183cb4670efe7 225236 r-mathlib-dbgsym_4.3.2-1build1_ppc64el.ddeb 5e1666a3727798dff58c4746e422224efc12582892a36f892486e914e6efbb6f 2425456 r-mathlib_4.3.2-1build1_ppc64el.deb Build-Origin: Ubuntu Build-Architecture: ppc64el Build-Date: Tue, 19 Dec 2023 09:59:10 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: adwaita-icon-theme (= 41.0-1ubuntu1), at-spi2-common (= 2.50.0-1), autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-14), autotools-dev (= 20220109.1), base-files (= 13ubuntu5), base-passwd (= 3.6.3), bash (= 5.2.21-2ubuntu1), bash-completion (= 1:2.11-8), binutils (= 2.41.50.20231214-1ubuntu1), binutils-common (= 2.41.50.20231214-1ubuntu1), binutils-powerpc64le-linux-gnu (= 2.41.50.20231214-1ubuntu1), bison (= 2:3.8.2+dfsg-1build1), bsdextrautils (= 2.39.2-6ubuntu1), bsdutils (= 1:2.39.2-6ubuntu1), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5build1), ca-certificates (= 20230311ubuntu1), ca-certificates-java (= 20230710), coreutils (= 9.4-2ubuntu1), cpp (= 4:13.2.0-2ubuntu1), cpp-13 (= 13.2.0-9ubuntu1), dash (= 0.5.12-6ubuntu1), debconf (= 1.5.82), debhelper (= 13.11.8ubuntu1), debianutils (= 5.14), debugedit (= 1:5.0-5), default-jdk (= 2:1.17-75), default-jdk-headless (= 2:1.17-75), default-jre (= 2:1.17-75), default-jre-headless (= 2:1.17-75), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.1ubuntu5), dpkg-dev (= 1.22.1ubuntu5), dwz (= 0.15-1), file (= 1:5.45-2), findutils (= 4.9.0-5), fontconfig (= 2.14.2-6ubuntu1), fontconfig-config (= 2.14.2-6ubuntu1), fonts-dejavu-core (= 2.37-8), fonts-dejavu-mono (= 2.37-8), fonts-lmodern (= 2.005-1), g++ (= 4:13.2.0-2ubuntu1), g++-13 (= 13.2.0-9ubuntu1), gcc (= 4:13.2.0-2ubuntu1), gcc-13 (= 13.2.0-9ubuntu1), gcc-13-base (= 13.2.0-9ubuntu1), gettext (= 0.21-14), gettext-base (= 0.21-14), gfortran (= 4:13.2.0-2ubuntu1), gfortran-13 (= 13.2.0-9ubuntu1), gir1.2-freedesktop (= 1.78.1-5), gir1.2-glib-2.0 (= 1.78.1-5), gir1.2-harfbuzz-0.0 (= 8.0.1-1), gir1.2-pango-1.0 (= 1.51.0+ds-3), grep (= 3.11-3), groff-base (= 1.23.0-3), gtk-update-icon-cache (= 3.24.38-5ubuntu2), gzip (= 1.12-1ubuntu1), hicolor-icon-theme (= 0.17-2), hostname (= 3.23+nmu1ubuntu1), humanity-icon-theme (= 0.6.16), icu-devtools (= 74.2-1ubuntu1), init-system-helpers (= 1.66ubuntu1), intltool-debian (= 0.35.0+20060710.6), java-common (= 0.75), libacl1 (= 2.3.1-3), libapache-pom-java (= 29-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 13.2.0-9ubuntu1), libasound2 (= 1.2.10-3), libasound2-data (= 1.2.10-3), libatk1.0-0 (= 2.50.0-1), libatomic1 (= 13.2.0-9ubuntu1), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.1.2-1), libaudit1 (= 1:3.1.2-1), libavahi-client3 (= 0.8-13ubuntu2), libavahi-common-data (= 0.8-13ubuntu2), libavahi-common3 (= 0.8-13ubuntu2), libbinutils (= 2.41.50.20231214-1ubuntu1), libblas-dev (= 3.11.0-2build1), libblas3 (= 3.11.0-2build1), libblkid-dev (= 2.39.2-6ubuntu1), libblkid1 (= 2.39.2-6ubuntu1), libbrotli-dev (= 1.1.0-2), libbrotli1 (= 1.1.0-2), libbsd0 (= 0.11.7-4), libbz2-1.0 (= 1.0.8-5build1), libbz2-dev (= 1.0.8-5build1), libc-bin (= 2.38-3ubuntu1), libc-dev-bin (= 2.38-3ubuntu1), libc6 (= 2.38-3ubuntu1), libc6-dev (= 2.38-3ubuntu1), libcairo-gobject2 (= 1.18.0-1), libcairo-script-interpreter2 (= 1.18.0-1), libcairo2 (= 1.18.0-1), libcairo2-dev (= 1.18.0-1), libcap-ng0 (= 0.8.3-3), libcap2 (= 1:2.66-4ubuntu1), libcc1-0 (= 13.2.0-9ubuntu1), libcom-err2 (= 1.47.0-2ubuntu1), libcommons-logging-java (= 1.2-4), libcommons-parent-java (= 56-1), libcrypt-dev (= 1:4.4.36-2), libcrypt1 (= 1:4.4.36-2), libctf-nobfd0 (= 2.41.50.20231214-1ubuntu1), libctf0 (= 2.41.50.20231214-1ubuntu1), libcups2 (= 2.4.6-0ubuntu3), libcurl4 (= 8.4.0-2ubuntu1), libcurl4-openssl-dev (= 8.4.0-2ubuntu1), libdatrie-dev (= 0.2.13-2), libdatrie1 (= 0.2.13-2), libdb5.3 (= 5.3.28+dfsg2-4), libdbus-1-3 (= 1.14.10-1ubuntu1), libdebconfclient0 (= 0.271ubuntu1), libdebhelper-perl (= 13.11.8ubuntu1), libdeflate-dev (= 1.18-1), libdeflate0 (= 1.18-1), libdpkg-perl (= 1.22.1ubuntu5), libdrm-amdgpu1 (= 2.4.117-1), libdrm-common (= 2.4.117-1), libdrm-nouveau2 (= 2.4.117-1), libdrm-radeon1 (= 2.4.117-1), libdrm2 (= 2.4.117-1), libdw1 (= 0.190-1), libedit2 (= 3.1-20230828-1), libelf1 (= 0.190-1), libexpat1 (= 2.5.0-2), libexpat1-dev (= 2.5.0-2), libffi-dev (= 3.4.4-2), libffi8 (= 3.4.4-2), libfile-homedir-perl (= 1.006-2), libfile-stripnondeterminism-perl (= 1.13.1-1), libfile-which-perl (= 1.27-2), libfontbox-java (= 1:1.8.16-5), libfontconfig-dev (= 2.14.2-6ubuntu1), libfontconfig1 (= 2.14.2-6ubuntu1), libfontconfig1-dev (= 2.14.2-6ubuntu1), libfontenc1 (= 1:1.1.4-1build3), libfreetype-dev (= 2.13.2+dfsg-1), libfreetype6 (= 2.13.2+dfsg-1), libfribidi-dev (= 1.0.13-3), libfribidi0 (= 1.0.13-3), libgcc-13-dev (= 13.2.0-9ubuntu1), libgcc-s1 (= 13.2.0-9ubuntu1), libgcrypt20 (= 1.10.2-3ubuntu1), libgdbm-compat4 (= 1.23-5), libgdbm6 (= 1.23-5), libgdk-pixbuf-2.0-0 (= 2.42.10+dfsg-3), libgdk-pixbuf2.0-common (= 2.42.10+dfsg-3), libgfortran-13-dev (= 13.2.0-9ubuntu1), libgfortran5 (= 13.2.0-9ubuntu1), libgif7 (= 5.2.1-2.5), libgirepository-1.0-1 (= 1.78.1-5), libgl1 (= 1.7.0-1), libgl1-mesa-dri (= 23.3.0-2ubuntu3), libglapi-mesa (= 23.3.0-2ubuntu3), libglib2.0-0 (= 2.78.3-1), libglib2.0-bin (= 2.78.3-1), libglib2.0-data (= 2.78.3-1), libglib2.0-dev (= 2.78.3-1), libglib2.0-dev-bin (= 2.78.3-1), libglvnd0 (= 1.7.0-1), libglx-mesa0 (= 23.3.0-2ubuntu3), libglx0 (= 1.7.0-1), libgmp10 (= 2:6.3.0+dfsg-2ubuntu4), libgnutls30 (= 3.8.1-4ubuntu6), libgomp1 (= 13.2.0-9ubuntu1), libgpg-error0 (= 1.47-3build1), libgraphite2-3 (= 1.3.14-1build2), libgraphite2-dev (= 1.3.14-1build2), libgssapi-krb5-2 (= 1.20.1-5build1), libgtk2.0-0 (= 2.24.33-2ubuntu2), libgtk2.0-common (= 2.24.33-2ubuntu2), libharfbuzz-cairo0 (= 8.0.1-1), libharfbuzz-dev (= 8.0.1-1), libharfbuzz-gobject0 (= 8.0.1-1), libharfbuzz-icu0 (= 8.0.1-1), libharfbuzz-subset0 (= 8.0.1-1), libharfbuzz0b (= 8.0.1-1), libhogweed6 (= 3.9.1-2), libice-dev (= 2:1.0.10-1build2), libice6 (= 2:1.0.10-1build2), libicu-dev (= 74.2-1ubuntu1), libicu72 (= 72.1-4ubuntu1), libicu74 (= 74.2-1ubuntu1), libidn2-0 (= 2.3.4-1build1), libisl23 (= 0.26-3), libitm1 (= 13.2.0-9ubuntu1), libjansson4 (= 2.14-2), libjbig-dev (= 2.1-6.1ubuntu1), libjbig0 (= 2.1-6.1ubuntu1), libjpeg-dev (= 8c-2ubuntu11), libjpeg-turbo8 (= 2.1.5-2ubuntu1), libjpeg-turbo8-dev (= 2.1.5-2ubuntu1), libjpeg8 (= 8c-2ubuntu11), libjpeg8-dev (= 8c-2ubuntu11), libjs-jquery (= 3.6.1+dfsg+~3.5.14-1), libk5crypto3 (= 1.20.1-5build1), libkeyutils1 (= 1.6.3-2), libkpathsea6 (= 2023.20230311.66589-8), libkrb5-3 (= 1.20.1-5build1), libkrb5support0 (= 1.20.1-5build1), liblapack-dev (= 3.11.0-2build1), liblapack3 (= 3.11.0-2build1), liblcms2-2 (= 2.14-2), libldap2 (= 2.6.6+dfsg-1~exp1ubuntu1), liblerc-dev (= 4.0.0+ds-4ubuntu1), liblerc4 (= 4.0.0+ds-4ubuntu1), libllvm17 (= 1:17.0.6-3), liblsan0 (= 13.2.0-9ubuntu1), liblz4-1 (= 1.9.4-1), liblzma-dev (= 5.4.5-0.1), liblzma5 (= 5.4.5-0.1), liblzo2-2 (= 2.10-2build3), libmagic-mgc (= 1:5.45-2), libmagic1 (= 1:5.45-2), libmd0 (= 1.1.0-1), libmime-charset-perl (= 1.013.1-2), libmount-dev (= 2.39.2-6ubuntu1), libmount1 (= 2.39.2-6ubuntu1), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.1-1), libncurses-dev (= 6.4+20231209-1), libncurses6 (= 6.4+20231209-1), libncursesw6 (= 6.4+20231209-1), libnettle8 (= 3.9.1-2), libnghttp2-14 (= 1.58.0-1), libnsl-dev (= 1.3.0-3), libnsl2 (= 1.3.0-3), libnspr4 (= 2:4.35-1.1), libnss3 (= 2:3.96.1-1), libp11-kit0 (= 0.25.3-2ubuntu2), libpam-modules (= 1.5.2-9.1ubuntu1), libpam-modules-bin (= 1.5.2-9.1ubuntu1), libpam-runtime (= 1.5.2-9.1ubuntu1), libpam0g (= 1.5.2-9.1ubuntu1), libpango-1.0-0 (= 1.51.0+ds-3), libpango1.0-dev (= 1.51.0+ds-3), libpangocairo-1.0-0 (= 1.51.0+ds-3), libpangoft2-1.0-0 (= 1.51.0+ds-3), libpangoxft-1.0-0 (= 1.51.0+ds-3), libpaper-utils (= 1.1.29), libpaper1 (= 1.1.29), libpcre2-16-0 (= 10.42-4ubuntu1), libpcre2-32-0 (= 10.42-4ubuntu1), libpcre2-8-0 (= 10.42-4ubuntu1), libpcre2-dev (= 10.42-4ubuntu1), libpcre2-posix3 (= 10.42-4ubuntu1), libpcsclite1 (= 2.0.1-1), libpdfbox-java (= 1:1.8.16-5), libperl5.36 (= 5.36.0-10ubuntu1), libpipeline1 (= 1.5.7-1), libpixman-1-0 (= 0.42.2-1), libpixman-1-dev (= 0.42.2-1), libpkgconf3 (= 1.8.1-2), libpng-dev (= 1.6.40-2), libpng16-16 (= 1.6.40-2), libpotrace0 (= 1.16-2), libpsl5 (= 0.21.2-1build1), libptexenc1 (= 2023.20230311.66589-8), libpthread-stubs0-dev (= 0.4-1build2), libpython3-stdlib (= 3.11.4-5ubuntu1), libpython3.11-minimal (= 3.11.7-2), libpython3.11-stdlib (= 3.11.7-2), libquadmath0 (= 13.2.0-9ubuntu1), libreadline-dev (= 8.2-3), libreadline8 (= 8.2-3), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build4), libsasl2-2 (= 2.1.28+dfsg1-4), libsasl2-modules-db (= 2.1.28+dfsg1-4), libseccomp2 (= 2.5.4-2ubuntu1), libselinux1 (= 3.5-1build2), libselinux1-dev (= 3.5-1build2), libsensors-config (= 1:3.6.0-7ubuntu1), libsensors5 (= 1:3.6.0-7ubuntu1), libsepol-dev (= 3.5-2), libsepol2 (= 3.5-2), libsframe1 (= 2.41.50.20231214-1ubuntu1), libsharpyuv-dev (= 1.3.2-0.3), libsharpyuv0 (= 1.3.2-0.3), libsm-dev (= 2:1.2.3-1build2), libsm6 (= 2:1.2.3-1build2), libsmartcols1 (= 2.39.2-6ubuntu1), libsombok3 (= 2.4.0-2), libsqlite3-0 (= 3.44.2-1), libssh-4 (= 0.10.5-3ubuntu1), libssl3 (= 3.0.10-1ubuntu3), libstdc++-13-dev (= 13.2.0-9ubuntu1), libstdc++6 (= 13.2.0-9ubuntu1), libsub-override-perl (= 0.10-1), libsynctex2 (= 2023.20230311.66589-8), libsystemd0 (= 255-1ubuntu1), libtasn1-6 (= 4.19.0-3), libtcl8.6 (= 8.6.13+dfsg-2), libteckit0 (= 2.5.11+ds1-1), libtexlua53-5 (= 2023.20230311.66589-8), libtext-unidecode-perl (= 1.30-3), libthai-data (= 0.1.29-1build1), libthai-dev (= 0.1.29-1build1), libthai0 (= 0.1.29-1build1), libtiff-dev (= 4.5.1+git230720-1ubuntu1), libtiff6 (= 4.5.1+git230720-1ubuntu1), libtiffxx6 (= 4.5.1+git230720-1ubuntu1), libtinfo6 (= 6.4+20231209-1), libtirpc-common (= 1.3.4+ds-1), libtirpc-dev (= 1.3.4+ds-1), libtirpc3 (= 1.3.4+ds-1), libtk8.6 (= 8.6.13-2), libtool (= 2.4.7-7), libtsan2 (= 13.2.0-9ubuntu1), libubsan1 (= 13.2.0-9ubuntu1), libuchardet0 (= 0.0.8-1), libudev1 (= 255-1ubuntu1), libunicode-linebreak-perl (= 0.0.20190101-1build4), libunistring5 (= 1.1-2), libunwind8 (= 1.6.2-3), libuuid1 (= 2.39.2-6ubuntu1), libvulkan1 (= 1.3.268.0-1), libwebp-dev (= 1.3.2-0.3), libwebp7 (= 1.3.2-0.3), libwebpdecoder3 (= 1.3.2-0.3), libwebpdemux2 (= 1.3.2-0.3), libwebpmux3 (= 1.3.2-0.3), libx11-6 (= 2:1.8.7-1), libx11-data (= 2:1.8.7-1), libx11-dev (= 2:1.8.7-1), libx11-xcb1 (= 2:1.8.7-1), libxau-dev (= 1:1.0.9-1build5), libxau6 (= 1:1.0.9-1build5), libxaw7 (= 2:1.0.14-1), libxcb-dri2-0 (= 1.15-1), libxcb-dri3-0 (= 1.15-1), libxcb-glx0 (= 1.15-1), libxcb-present0 (= 1.15-1), libxcb-randr0 (= 1.15-1), libxcb-render0 (= 1.15-1), libxcb-render0-dev (= 1.15-1), libxcb-shm0 (= 1.15-1), libxcb-shm0-dev (= 1.15-1), libxcb-sync1 (= 1.15-1), libxcb-xfixes0 (= 1.15-1), libxcb1 (= 1.15-1), libxcb1-dev (= 1.15-1), libxcomposite1 (= 1:0.4.5-1build2), libxcursor1 (= 1:1.2.1-1), libxdamage1 (= 1:1.1.6-1), libxdmcp-dev (= 1:1.1.3-0ubuntu5), libxdmcp6 (= 1:1.1.3-0ubuntu5), libxext-dev (= 2:1.3.4-1build1), libxext6 (= 2:1.3.4-1build1), libxfixes3 (= 1:6.0.0-2), libxfont2 (= 1:2.0.6-1), libxft-dev (= 2.3.6-1), libxft2 (= 2.3.6-1), libxi6 (= 2:1.8-1build1), libxinerama1 (= 2:1.1.4-3), libxkbfile1 (= 1:1.1.0-1build3), libxml-libxml-perl (= 2.0207+dfsg+really+2.0134-1build1), libxml-namespacesupport-perl (= 1.12-2), libxml-sax-base-perl (= 1.09-3), libxml-sax-perl (= 1.02+dfsg-3), libxml2 (= 2.9.14+dfsg-1.3build2), libxmu6 (= 2:1.1.3-3), libxmuu1 (= 2:1.1.3-3), libxpm4 (= 1:3.5.17-1), libxrandr2 (= 2:1.5.2-2), libxrender-dev (= 1:0.9.10-1.1), libxrender1 (= 1:0.9.10-1.1), libxshmfence1 (= 1.3-1build4), libxss-dev (= 1:1.2.3-1build2), libxss1 (= 1:1.2.3-1build2), libxt-dev (= 1:1.2.1-1.1), libxt6 (= 1:1.2.1-1.1), libxtst6 (= 2:1.2.3-1.1), libxxf86vm1 (= 1:1.1.4-1build3), libyaml-tiny-perl (= 1.74-1), libzstd-dev (= 1.5.5+dfsg2-2), libzstd1 (= 1.5.5+dfsg2-2), libzzip-0-13 (= 0.13.72+dfsg.1-1.1), linux-libc-dev (= 6.6.0-14.14), lmodern (= 2.005-1), login (= 1:4.13+dfsg1-3ubuntu1), lto-disabled-list (= 44), m4 (= 1.4.19-4), make (= 4.3-4.1build1), man-db (= 2.12.0-1), mawk (= 1.3.4.20231126-1), media-types (= 10.1.0), mpack (= 1.6-18), ncurses-base (= 6.4+20231209-1), ncurses-bin (= 6.4+20231209-1), netbase (= 6.4), openjdk-17-jdk (= 17.0.9+9-2), openjdk-17-jdk-headless (= 17.0.9+9-2), openjdk-17-jre (= 17.0.9+9-2), openjdk-17-jre-headless (= 17.0.9+9-2), openssl (= 3.0.10-1ubuntu3), pango1.0-tools (= 1.51.0+ds-3), patch (= 2.7.6-7build2), perl (= 5.36.0-10ubuntu1), perl-base (= 5.36.0-10ubuntu1), perl-modules-5.36 (= 5.36.0-10ubuntu1), pkg-config (= 1.8.1-2), pkgconf (= 1.8.1-2), pkgconf-bin (= 1.8.1-2), po-debconf (= 1.0.21+nmu1), preview-latex-style (= 13.2-1), python3 (= 3.11.4-5ubuntu1), python3-distutils (= 3.11.5-1), python3-lib2to3 (= 3.11.5-1), python3-minimal (= 3.11.4-5ubuntu1), python3.11 (= 3.11.7-2), python3.11-minimal (= 3.11.7-2), readline-common (= 8.2-3), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.9-1), sensible-utils (= 0.0.20), shared-mime-info (= 2.4-1), sysvinit-utils (= 3.08-3ubuntu1), t1utils (= 1.41-4build2), tar (= 1.34+dfsg-1.2ubuntu2), tcl8.6 (= 8.6.13+dfsg-2), tcl8.6-dev (= 8.6.13+dfsg-2), tex-common (= 6.18), texinfo (= 7.1-2), texinfo-lib (= 7.1-2), texlive-base (= 2023.20231207-1), texlive-binaries (= 2023.20230311.66589-8), texlive-extra-utils (= 2023.20231207-3), texlive-fonts-extra (= 2023.20231207-3), texlive-fonts-recommended (= 2023.20231207-1), texlive-latex-base (= 2023.20231207-1), texlive-latex-extra (= 2023.20231207-3), texlive-latex-recommended (= 2023.20231207-1), texlive-luatex (= 2023.20231207-1), texlive-pictures (= 2023.20231207-1), texlive-plain-generic (= 2023.20231207-3), tk8.6 (= 8.6.13-2), tk8.6-dev (= 8.6.13-2), tzdata (= 2023c-9ubuntu1), ubuntu-mono (= 20.10-0ubuntu2), ucf (= 3.0043+nmu1), util-linux (= 2.39.2-6ubuntu1), uuid-dev (= 2.39.2-6ubuntu1), x11-common (= 1:7.7+23ubuntu2), x11-xkb-utils (= 7.7+8), x11proto-core-dev (= 2023.2-1), x11proto-dev (= 2023.2-1), xauth (= 1:1.1.2-1), xdg-utils (= 1.1.3-4.1ubuntu3), xfonts-base (= 1:1.0.5+nmu1), xfonts-encodings (= 1:1.0.5-0ubuntu2), xfonts-utils (= 1:7.7+6build2), xkb-data (= 2.38-2), xorg-sgml-doctools (= 1:1.11-1.1), xserver-common (= 2:21.1.10-1ubuntu1), xtrans-dev (= 1.4.0-1), xvfb (= 2:21.1.10-1ubuntu1), xz-utils (= 5.4.5-0.1), zlib1g (= 1:1.3.dfsg-3ubuntu1), zlib1g-dev (= 1:1.3.dfsg-3ubuntu1) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1702978041" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-base-core_4.3.2-1build1_ppc64el.deb ------------------------------------- new Debian package, version 2.0. size 27404464 bytes: control archive=26803 bytes. 93 bytes, 5 lines conffiles 3026 bytes, 45 lines control 82974 bytes, 1030 lines md5sums 2714 bytes, 73 lines * postinst #!/bin/sh 215 bytes, 5 lines * postrm #!/bin/sh 865 bytes, 37 lines * preinst #!/bin/sh 887 bytes, 29 lines * prerm #!/bin/sh Package: r-base-core Source: r-base Version: 4.3.2-1build1 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Dirk Eddelbuettel Installed-Size: 45626 Depends: zip, unzip, libpaper-utils, xdg-utils, libblas3 | libblas.so.3, libbz2-1.0, libc6 (>= 2.38), libcairo2 (>= 1.6.0), libcurl4 (>= 7.28.0), libglib2.0-0 (>= 2.12.0), libgomp1 (>= 4.9), libicu74 (>= 74.1-1~), libjpeg8 (>= 8c), liblapack3 | liblapack.so.3, liblzma5 (>= 5.1.1alpha+20120614), libpango-1.0-0 (>= 1.18.0), libpangocairo-1.0-0 (>= 1.14.0), libpcre2-8-0 (>= 10.22), libpng16-16 (>= 1.6.2), libreadline8 (>= 6.0), libtcl8.6 (>= 8.6.0), libtiff6 (>= 4.0.3), libtirpc3 (>= 1.0.2), libtk8.6 (>= 8.6.0), libx11-6, libxt6, zlib1g (>= 1:1.1.4), ucf (>= 3.0), ca-certificates Recommends: r-recommended, r-base-dev, r-doc-html Suggests: elpa-ess, r-doc-info | r-doc-pdf, r-mathlib, r-base-html Breaks: r-cran-cairo (<< 1.6-0-4~), r-cran-fnn (<< 1.1.3.2-1~), r-cran-intervals (<< 0.15.3-1~), r-cran-magick (<< 2.7.4+dfsg-2~), r-cran-maldiquant (<< 1.22.1-1~), r-cran-ps (<< 1.7.5-1~), r-cran-ragg (<< 1.2.5-3~), r-cran-svglite (<< 2.1.1-3~), r-cran-tibble (<< 3.2.1+dfsg-2~), r-cran-tikzdevice (<< 0.12.4-3~), r-cran-vdiffr (<< 1.0.5-3~) Replaces: r-base (<= 1.4.1-1), r-recommended (<< 1.9.0) Provides: r-api-4.0, r-graphics-engine-16 Section: gnu-r Priority: optional Homepage: http://www.r-project.org/ Description: GNU R core of statistical computation and graphics system R is a system for statistical computation and graphics. It consists of a language plus a run-time environment with graphics, a debugger, access to certain system functions, and the ability to run programs stored in script files. . The design of R has been heavily influenced by two existing languages: Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the resulting language is very similar in appearance to S, the underlying implementation and semantics are derived from Scheme. . The core of R is an interpreted computer language which allows branching and looping as well as modular programming using functions. Most of the user-visible functions in R are written in R. It is possible for the user to interface to procedures written in the C, C++, or FORTRAN languages for efficiency, and many of R's core functions do so. The R distribution contains functionality for a large number of statistical procedures and underlying applied math computations. There is also a large set of functions which provide a flexible graphical environment for creating various kinds of data presentations. . Additionally, several thousand extension "packages" are available from CRAN, the Comprehensive R Archive Network, many also as Debian packages, named 'r-cran-'. . This package provides the core GNU R system from which only the optional documentation packages r-base-html, r-doc-html, r-doc-pdf and r-doc-info have been split off to somewhat reduce the size of this package. drwxr-xr-x root/root 0 2023-12-19 09:27 ./ drwxr-xr-x root/root 0 2023-12-19 09:27 ./etc/ drwxr-xr-x root/root 0 2023-12-19 09:27 ./etc/R/ -rw-r--r-- root/root 11600 2023-12-19 09:27 ./etc/R/Makeconf -rw-r--r-- root/root 1983 2023-12-19 09:27 ./etc/R/Renviron.site -rw-r--r-- root/root 988 2023-12-19 09:27 ./etc/R/Rprofile.site -rw-r--r-- root/root 793 2023-12-19 09:27 ./etc/R/ldpaths -rw-r--r-- root/root 1173 2023-12-19 09:27 ./etc/R/repositories drwxr-xr-x root/root 0 2023-12-19 09:27 ./etc/ld.so.conf.d/ drwxr-xr-x root/root 0 2023-12-19 09:27 ./usr/ drwxr-xr-x root/root 0 2023-12-19 09:27 ./usr/bin/ -rwxr-xr-x root/root 9002 2023-12-19 09:27 ./usr/bin/R -rwxr-xr-x root/root 67600 2023-12-19 09:27 ./usr/bin/Rscript drwxr-xr-x root/root 0 2023-12-19 09:27 ./usr/lib/ drwxr-xr-x 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mathematics library R is a system for statistical computation and graphics. It consists of a language plus a run-time environment with graphics, a debugger, access to certain system functions, and the ability to run programs stored in script files. . The design of R has been heavily influenced by two existing languages: Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the resulting language is very similar in appearance to S, the underlying implementation and semantics are derived from Scheme. . The core of R is an interpreted computer language which allows branching and looping as well as modular programming using functions. Most of the user-visible functions in R are written in R. It is possible for the user to interface to procedures written in the C, C++, or FORTRAN languages for efficiency, and many of R's core functions do so. The R distribution contains functionality for a large number of statistical procedures and underlying applied math computations. There is also a large set of functions which provide a flexible graphical environment for creating various kinds of data presentations. . Additionally, several thousand extension "packages" are available from CRAN, the Comprehensive R Archive Network, many also as Debian packages, named 'r-cran-'. . This package provides the libRmath shared and static libraries which can be called from standalone C or C++ code. drwxr-xr-x root/root 0 2023-12-19 09:27 ./ drwxr-xr-x root/root 0 2023-12-19 09:27 ./usr/ drwxr-xr-x root/root 0 2023-12-19 09:27 ./usr/include/ -rw-r--r-- root/root 17564 2023-12-19 09:27 ./usr/include/Rmath.h drwxr-xr-x root/root 0 2023-12-19 09:27 ./usr/lib/ -rw-r--r-- root/root 625508 2023-12-19 09:27 ./usr/lib/libRmath.a lrwxrwxrwx root/root 0 2023-12-19 09:27 ./usr/lib/libRmath.so -> libRmath.so.1 lrwxrwxrwx root/root 0 2023-12-19 09:27 ./usr/lib/libRmath.so.1 -> libRmath.so.1.0.0 -rw-r--r-- root/root 264392 2023-12-19 09:27 ./usr/lib/libRmath.so.1.0.0 drwxr-xr-x root/root 0 2023-12-19 09:27 ./usr/lib/pkgconfig/ -rw-r--r-- root/root 173 2023-12-19 09:27 ./usr/lib/pkgconfig/libRmath.pc drwxr-xr-x root/root 0 2023-12-19 09:27 ./usr/share/ drwxr-xr-x root/root 0 2023-12-19 09:27 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-12-19 09:27 ./usr/share/doc/r-mathlib/ -rw-r--r-- root/root 35933 2018-09-25 08:43 ./usr/share/doc/r-mathlib/NEWS.0.gz -rw-r--r-- root/root 108754 2022-11-01 23:15 ./usr/share/doc/r-mathlib/NEWS.1.gz -rw-r--r-- root/root 96630 2020-03-26 23:02 ./usr/share/doc/r-mathlib/NEWS.2.Rd.gz -rw-r--r-- root/root 229638 2022-03-24 23:02 ./usr/share/doc/r-mathlib/NEWS.2.gz -rw-r--r-- root/root 397637 2023-12-19 09:27 ./usr/share/doc/r-mathlib/NEWS.2.rds.gz -rw-r--r-- root/root 122262 2022-11-01 23:15 ./usr/share/doc/r-mathlib/NEWS.3.Rd.gz -rw-r--r-- root/root 113067 2021-04-19 22:02 ./usr/share/doc/r-mathlib/NEWS.3.gz -rw-r--r-- root/root 516383 2023-12-19 09:27 ./usr/share/doc/r-mathlib/NEWS.3.rds.gz -rw-r--r-- root/root 61444 2023-10-23 22:02 ./usr/share/doc/r-mathlib/NEWS.Rd.gz lrwxrwxrwx root/root 0 2023-12-19 09:27 ./usr/share/doc/r-mathlib/NEWS.gz -> changelog.gz -rw-r--r-- root/root 287577 2023-12-19 09:27 ./usr/share/doc/r-mathlib/NEWS.pdf.gz -rw-r--r-- root/root 250509 2023-12-19 09:27 ./usr/share/doc/r-mathlib/NEWS.rds.gz -rw-r--r-- root/root 2107 2018-09-25 08:47 ./usr/share/doc/r-mathlib/README.gz -rw-r--r-- root/root 3026 2022-11-11 15:48 ./usr/share/doc/r-mathlib/README.mathlib -rw-r--r-- root/root 4386 2023-12-19 09:27 ./usr/share/doc/r-mathlib/changelog.Debian.gz -rw-r--r-- root/root 20761 2022-11-11 15:48 ./usr/share/doc/r-mathlib/copyright drwxr-xr-x root/root 0 2023-12-19 09:27 ./usr/share/doc/r-mathlib/examples/ -rw-r--r-- root/root 1371 2018-09-25 08:46 ./usr/share/doc/r-mathlib/examples/test.c drwxr-xr-x root/root 0 2023-12-19 09:27 ./usr/share/lintian/ drwxr-xr-x root/root 0 2023-12-19 09:27 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 364 2022-11-11 15:48 ./usr/share/lintian/overrides/r-mathlib +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build Type: any Build-Space: 384580 Build-Time: 669 Distribution: noble-proposed Host Architecture: ppc64el Install-Time: 223 Job: r-base_4.3.2-1build1.dsc Machine Architecture: ppc64el Package: r-base Package-Time: 895 Source-Version: 4.3.2-1build1 Space: 384580 Status: successful Version: 4.3.2-1build1 -------------------------------------------------------------------------------- Finished at 2023-12-19T09:59:11Z Build needed 00:14:55, 384580k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=ppc64el PACKAGEBUILD-27575133 Scanning for processes to kill in build PACKAGEBUILD-27575133