https://launchpad.net/ubuntu/+source/r-bioc-affxparser/1.62.0-2/+build/21483443 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-059 4.15.0-142-generic #146-Ubuntu SMP Tue Apr 13 01:08:49 UTC 2021 aarch64 Buildd toolchain package versions: launchpad-buildd_195~480~ubuntu18.04.1 python3-lpbuildd_195~480~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.8 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 30 Apr 17:24:50 ntpdate[1625]: adjust time server 10.211.37.1 offset 0.027024 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=impish --arch=arm64 PACKAGEBUILD-21483443 --image-type chroot /home/buildd/filecache-default/13acc7b09d4f3167554ebdf110d3864ddc7cf889 Creating target for build PACKAGEBUILD-21483443 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=impish --arch=arm64 PACKAGEBUILD-21483443 Starting target for build PACKAGEBUILD-21483443 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=impish --arch=arm64 PACKAGEBUILD-21483443 'deb http://ftpmaster.internal/ubuntu impish main universe' 'deb http://ftpmaster.internal/ubuntu impish-security main universe' 'deb http://ftpmaster.internal/ubuntu impish-updates main universe' 'deb http://ftpmaster.internal/ubuntu impish-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-21483443 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=impish --arch=arm64 PACKAGEBUILD-21483443 Updating target for build PACKAGEBUILD-21483443 Get:1 http://ftpmaster.internal/ubuntu impish InRelease [269 kB] Get:2 http://ftpmaster.internal/ubuntu impish-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu impish-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu impish-proposed InRelease [121 kB] Get:5 http://ftpmaster.internal/ubuntu impish/main arm64 Packages [1368 kB] Get:6 http://ftpmaster.internal/ubuntu impish/main Translation-en [511 kB] Get:7 http://ftpmaster.internal/ubuntu impish/universe arm64 Packages [13.0 MB] Get:8 http://ftpmaster.internal/ubuntu impish/universe Translation-en [5460 kB] Get:9 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 Packages [100 kB] Get:10 http://ftpmaster.internal/ubuntu impish-proposed/main Translation-en [35.8 kB] Get:11 http://ftpmaster.internal/ubuntu impish-proposed/universe arm64 Packages [516 kB] Get:12 http://ftpmaster.internal/ubuntu impish-proposed/universe Translation-en [216 kB] Fetched 21.8 MB in 7s (3085 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt base-files build-essential cpp cpp-10 debconf diffutils dpkg dpkg-dev g++ g++-10 gcc gcc-10 gcc-10-base gcc-11-base gzip libapt-pkg6.0 libasan6 libatomic1 libc-bin libc-dev-bin libc6 libc6-dev libcc1-0 libdpkg-perl libgcc-10-dev libgcc-s1 libgomp1 libgssapi-krb5-2 libitm1 libk5crypto3 libkrb5-3 libkrb5support0 liblsan0 liblzma5 libstdc++-10-dev libstdc++6 libtsan0 libubsan1 libzstd1 linux-libc-dev sysvinit-utils xz-utils 43 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 53.1 MB of archives. After this operation, 6274 kB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libc6-dev arm64 2.33-0ubuntu6 [1720 kB] Get:2 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libc-dev-bin arm64 2.33-0ubuntu6 [18.2 kB] Get:3 http://ftpmaster.internal/ubuntu impish/main arm64 linux-libc-dev arm64 5.11.0-16.17 [1181 kB] Get:4 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libasan6 arm64 11.1.0-1ubuntu1 [1976 kB] Get:5 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libubsan1 arm64 11.1.0-1ubuntu1 [817 kB] Get:6 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libtsan0 arm64 11.1.0-1ubuntu1 [1973 kB] Get:7 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 liblsan0 arm64 11.1.0-1ubuntu1 [850 kB] Get:8 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libitm1 arm64 11.1.0-1ubuntu1 [24.2 kB] Get:9 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libgomp1 arm64 11.1.0-1ubuntu1 [98.4 kB] Get:10 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 gcc-11-base arm64 11.1.0-1ubuntu1 [18.8 kB] Get:11 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libgcc-s1 arm64 11.1.0-1ubuntu1 [34.4 kB] Get:12 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libcc1-0 arm64 11.1.0-1ubuntu1 [46.4 kB] Get:13 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libatomic1 arm64 11.1.0-1ubuntu1 [9844 B] Get:14 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libstdc++6 arm64 11.1.0-1ubuntu1 [534 kB] Get:15 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libc6 arm64 2.33-0ubuntu6 [2264 kB] Get:16 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 base-files arm64 11.1ubuntu2 [61.0 kB] Get:17 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 diffutils arm64 1:3.7-5ubuntu1 [181 kB] Get:18 http://ftpmaster.internal/ubuntu impish/main arm64 dpkg arm64 1.20.9ubuntu1 [1248 kB] Get:19 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 gzip arm64 1.10-4ubuntu1 [89.3 kB] Get:20 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libc-bin arm64 2.33-0ubuntu6 [523 kB] Get:21 http://ftpmaster.internal/ubuntu impish/main arm64 sysvinit-utils arm64 2.96-7ubuntu1 [19.7 kB] Get:22 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 liblzma5 arm64 5.2.5-2 [91.2 kB] Get:23 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libzstd1 arm64 1.4.8+dfsg-2.1 [265 kB] Get:24 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libapt-pkg6.0 arm64 2.3.2 [737 kB] Get:25 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 apt arm64 2.3.2 [1250 kB] Get:26 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 debconf all 1.5.76 [121 kB] Get:27 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libgssapi-krb5-2 arm64 1.18.3-5 [120 kB] Get:28 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libkrb5-3 arm64 1.18.3-5 [295 kB] Get:29 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libkrb5support0 arm64 1.18.3-5 [29.2 kB] Get:30 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libk5crypto3 arm64 1.18.3-5 [76.7 kB] Get:31 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 xz-utils arm64 5.2.5-2 [80.2 kB] Get:32 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 g++-10 arm64 10.3.0-2ubuntu1 [8927 kB] Get:33 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libstdc++-10-dev arm64 10.3.0-2ubuntu1 [1725 kB] Get:34 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 gcc-10 arm64 10.3.0-2ubuntu1 [15.8 MB] Get:35 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libgcc-10-dev arm64 10.3.0-2ubuntu1 [911 kB] Get:36 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 cpp-10 arm64 10.3.0-2ubuntu1 [7785 kB] Get:37 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 gcc-10-base arm64 10.3.0-2ubuntu1 [20.4 kB] Get:38 http://ftpmaster.internal/ubuntu impish/main arm64 g++ arm64 4:10.3.0-1ubuntu3 [1592 B] Get:39 http://ftpmaster.internal/ubuntu impish/main arm64 gcc arm64 4:10.3.0-1ubuntu3 [5236 B] Get:40 http://ftpmaster.internal/ubuntu impish/main arm64 cpp arm64 4:10.3.0-1ubuntu3 [27.7 kB] Get:41 http://ftpmaster.internal/ubuntu impish/main arm64 dpkg-dev all 1.20.9ubuntu1 [937 kB] Get:42 http://ftpmaster.internal/ubuntu impish/main arm64 libdpkg-perl all 1.20.9ubuntu1 [232 kB] Get:43 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 build-essential arm64 12.9ubuntu1 [4740 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 53.1 MB in 2s (25.6 MB/s) (Reading database ... 13119 files and directories currently installed.) 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Setting up libkrb5support0:arm64 (1.18.3-5) ... Setting up gcc-10-base:arm64 (10.3.0-2ubuntu1) ... Setting up xz-utils (5.2.5-2) ... Setting up libatomic1:arm64 (11.1.0-1ubuntu1) ... Setting up libk5crypto3:arm64 (1.18.3-5) ... Setting up libdpkg-perl (1.20.9ubuntu1) ... Setting up libubsan1:arm64 (11.1.0-1ubuntu1) ... Setting up libkrb5-3:arm64 (1.18.3-5) ... Setting up libc-dev-bin (2.33-0ubuntu6) ... Setting up libcc1-0:arm64 (11.1.0-1ubuntu1) ... Setting up liblsan0:arm64 (11.1.0-1ubuntu1) ... Setting up cpp-10 (10.3.0-2ubuntu1) ... Setting up libitm1:arm64 (11.1.0-1ubuntu1) ... Setting up libtsan0:arm64 (11.1.0-1ubuntu1) ... Setting up libgcc-10-dev:arm64 (10.3.0-2ubuntu1) ... Setting up dpkg-dev (1.20.9ubuntu1) ... Setting up libgssapi-krb5-2:arm64 (1.18.3-5) ... Setting up gcc-10 (10.3.0-2ubuntu1) ... Setting up cpp (4:10.3.0-1ubuntu3) ... Setting up libc6-dev:arm64 (2.33-0ubuntu6) ... Setting up libstdc++-10-dev:arm64 (10.3.0-2ubuntu1) ... Setting up g++-10 (10.3.0-2ubuntu1) ... Setting up gcc (4:10.3.0-1ubuntu3) ... Setting up g++ (4:10.3.0-1ubuntu3) ... Setting up build-essential (12.9ubuntu1) ... Processing triggers for libc-bin (2.33-0ubuntu6) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-21483443 arm64 impish-proposed -c chroot:build-PACKAGEBUILD-21483443 --arch=arm64 --dist=impish-proposed --nolog r-bioc-affxparser_1.62.0-2.dsc Initiating build PACKAGEBUILD-21483443 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-142-generic #146-Ubuntu SMP Tue Apr 13 01:08:49 UTC 2021 aarch64 sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-arm64-059.buildd +==============================================================================+ | r-bioc-affxparser 1.62.0-2 (arm64) Fri, 30 Apr 2021 17:25:34 +0000 | +==============================================================================+ Package: r-bioc-affxparser Version: 1.62.0-2 Source Version: 1.62.0-2 Distribution: impish-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-21483443/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-bioc-affxparser_1.62.0-2.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/r-bioc-affxparser-iXirpb/r-bioc-affxparser-1.62.0' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-affxparser-iXirpb' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-2jgCo2/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-2jgCo2/apt_archive ./ InRelease Get:2 copy:/<>/resolver-2jgCo2/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-2jgCo2/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-2jgCo2/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-2jgCo2/apt_archive ./ Packages [430 B] Fetched 1736 B in 0s (51.2 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-2jgCo2/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (66.4 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13126 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev dpkg-deb: building package 'sbuild-build-depends-r-bioc-affxparser-dummy' in '/<>/resolver-2jgCo2/apt_archive/sbuild-build-depends-r-bioc-affxparser-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-affxparser-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-2jgCo2/apt_archive ./ InRelease Get:2 copy:/<>/resolver-2jgCo2/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-2jgCo2/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-2jgCo2/apt_archive ./ Sources [509 B] Get:5 copy:/<>/resolver-2jgCo2/apt_archive ./ Packages [591 B] Fetched 2063 B in 0s (62.1 kB/s) Reading package lists... Reading package lists... Install r-bioc-affxparser build dependencies (apt-based resolver) ----------------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils dctrl-tools debhelper debugedit dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-10 groff-base icu-devtools intltool-debian libalgorithm-c3-perl libarchive-zip-perl libasn1-8-heimdal libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdw1 libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-10-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi3-heimdal libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhttp-date-perl libhttp-message-perl libhx509-5-heimdal libice6 libicu-dev libicu67 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libkrb5-26-heimdal liblapack-dev liblapack3 libldap-2.4-2 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp6 libwind0-heimdal libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db pkg-config po-debconf r-base-core r-base-dev ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc gfortran-10-doc libcoarrays-dev groff liblapack-doc icu-doc liblzma-doc ncurses-doc libscalar-number-perl readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk libwww-perl libcurl4-gnutls-dev m4-doc apparmor less www-browser libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo Recommended packages: devscripts cme git-buildpackage curl | wget | lynx bzip2-doc libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libclone-perl libldap-common libdevel-partialdump-perl libpng-tools publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl r-recommended r-doc-html libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils dctrl-tools debhelper debugedit dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-10 groff-base icu-devtools intltool-debian libalgorithm-c3-perl libarchive-zip-perl libasn1-8-heimdal libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdw1 libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-10-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi3-heimdal libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhttp-date-perl libhttp-message-perl libhx509-5-heimdal libice6 libicu-dev libicu67 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libkrb5-26-heimdal liblapack-dev liblapack3 libldap-2.4-2 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp6 libwind0-heimdal libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db pkg-config po-debconf r-base-core r-base-dev sbuild-build-depends-r-bioc-affxparser-dummy ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 179 newly installed, 0 to remove and 0 not upgraded. Need to get 78.8 MB of archives. After this operation, 259 MB of additional disk space will be used. Get:1 copy:/<>/resolver-2jgCo2/apt_archive ./ sbuild-build-depends-r-bioc-affxparser-dummy 0.invalid.0 [880 B] Get:2 http://ftpmaster.internal/ubuntu impish/main arm64 bsdextrautils arm64 2.36.1-7ubuntu2 [77.7 kB] Get:3 http://ftpmaster.internal/ubuntu impish/main arm64 libuchardet0 arm64 0.0.7-1 [68.0 kB] Get:4 http://ftpmaster.internal/ubuntu impish/main arm64 groff-base arm64 1.22.4-6 [809 kB] Get:5 http://ftpmaster.internal/ubuntu impish/main arm64 libpipeline1 arm64 1.5.3-1 [26.1 kB] Get:6 http://ftpmaster.internal/ubuntu impish/main arm64 man-db arm64 2.9.4-2 [1136 kB] Get:7 http://ftpmaster.internal/ubuntu impish/main arm64 libmd0 arm64 1.0.3-3build1 [21.4 kB] Get:8 http://ftpmaster.internal/ubuntu impish/main arm64 libbsd0 arm64 0.11.3-1ubuntu2 [39.0 kB] Get:9 http://ftpmaster.internal/ubuntu impish/main arm64 libelf1 arm64 0.183-8 [45.1 kB] Get:10 http://ftpmaster.internal/ubuntu impish/main arm64 libexpat1 arm64 2.2.10-2 [61.5 kB] Get:11 http://ftpmaster.internal/ubuntu impish/main arm64 libfribidi0 arm64 1.0.8-2ubuntu1 [23.7 kB] Get:12 http://ftpmaster.internal/ubuntu impish/main arm64 libglib2.0-0 arm64 2.68.0-1 [1214 kB] Get:13 http://ftpmaster.internal/ubuntu impish/main arm64 libicu67 arm64 67.1-6ubuntu2 [8456 kB] Get:14 http://ftpmaster.internal/ubuntu impish/main arm64 libxml2 arm64 2.9.10+dfsg-6.3build2 [618 kB] Get:15 http://ftpmaster.internal/ubuntu impish/main arm64 ucf all 3.0043 [56.1 kB] Get:16 http://ftpmaster.internal/ubuntu impish/main arm64 libmagic-mgc arm64 1:5.39-3 [228 kB] Get:17 http://ftpmaster.internal/ubuntu impish/main arm64 libmagic1 arm64 1:5.39-3 [75.1 kB] Get:18 http://ftpmaster.internal/ubuntu impish/main arm64 file arm64 1:5.39-3 [23.6 kB] Get:19 http://ftpmaster.internal/ubuntu impish/main arm64 gettext-base arm64 0.21-3ubuntu2 [38.6 kB] Get:20 http://ftpmaster.internal/ubuntu impish/main arm64 libpsl5 arm64 0.21.0-1.2 [53.2 kB] Get:21 http://ftpmaster.internal/ubuntu impish/main arm64 libxau6 arm64 1:1.0.9-1build3 [7248 B] Get:22 http://ftpmaster.internal/ubuntu impish/main arm64 libxdmcp6 arm64 1:1.1.3-0ubuntu3 [10.2 kB] Get:23 http://ftpmaster.internal/ubuntu impish/main arm64 libxcb1 arm64 1.14-3ubuntu1 [43.6 kB] Get:24 http://ftpmaster.internal/ubuntu impish/main arm64 libx11-data all 2:1.7.0-2build2 [112 kB] Get:25 http://ftpmaster.internal/ubuntu impish/main arm64 libx11-6 arm64 2:1.7.0-2build2 [552 kB] Get:26 http://ftpmaster.internal/ubuntu impish/main arm64 libxext6 arm64 2:1.3.4-0ubuntu3 [27.3 kB] Get:27 http://ftpmaster.internal/ubuntu impish/main arm64 libxmuu1 arm64 2:1.1.3-0ubuntu1 [9772 B] Get:28 http://ftpmaster.internal/ubuntu impish/main arm64 xauth arm64 1:1.1-1 [24.0 kB] Get:29 http://ftpmaster.internal/ubuntu impish/main arm64 libsigsegv2 arm64 2.13-1ubuntu1 [14.0 kB] Get:30 http://ftpmaster.internal/ubuntu impish/main arm64 m4 arm64 1.4.18-5 [194 kB] Get:31 http://ftpmaster.internal/ubuntu impish/main arm64 autoconf all 2.69-14 [293 kB] Get:32 http://ftpmaster.internal/ubuntu impish/main arm64 autotools-dev all 20180224.1+nmu1 [39.4 kB] Get:33 http://ftpmaster.internal/ubuntu impish/main arm64 automake all 1:1.16.3-2ubuntu1 [552 kB] Get:34 http://ftpmaster.internal/ubuntu impish/main arm64 autopoint all 0.21-3ubuntu2 [422 kB] Get:35 http://ftpmaster.internal/ubuntu impish/main arm64 dctrl-tools arm64 2.24-3 [59.1 kB] Get:36 http://ftpmaster.internal/ubuntu impish/main arm64 libdebhelper-perl all 13.3.4ubuntu1 [61.1 kB] Get:37 http://ftpmaster.internal/ubuntu impish/main arm64 libtool all 2.4.6-15 [161 kB] Get:38 http://ftpmaster.internal/ubuntu impish/main arm64 dh-autoreconf all 20 [16.1 kB] Get:39 http://ftpmaster.internal/ubuntu impish/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:40 http://ftpmaster.internal/ubuntu impish/main arm64 libsub-override-perl all 0.09-2 [9532 B] Get:41 http://ftpmaster.internal/ubuntu impish/main arm64 libfile-stripnondeterminism-perl all 1.11.0-1 [17.0 kB] Get:42 http://ftpmaster.internal/ubuntu impish/main arm64 dh-strip-nondeterminism all 1.11.0-1 [5236 B] Get:43 http://ftpmaster.internal/ubuntu impish/main arm64 libdw1 arm64 0.183-8 [207 kB] Get:44 http://ftpmaster.internal/ubuntu impish/main arm64 debugedit arm64 1:0.1-0ubuntu2 [37.2 kB] Get:45 http://ftpmaster.internal/ubuntu impish/main arm64 dwz arm64 0.14-1 [89.4 kB] Get:46 http://ftpmaster.internal/ubuntu impish/main arm64 gettext arm64 0.21-3ubuntu2 [775 kB] Get:47 http://ftpmaster.internal/ubuntu impish/main arm64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:48 http://ftpmaster.internal/ubuntu impish/main arm64 po-debconf all 1.0.21+nmu1 [233 kB] Get:49 http://ftpmaster.internal/ubuntu impish/main arm64 debhelper all 13.3.4ubuntu1 [920 kB] Get:50 http://ftpmaster.internal/ubuntu impish/main arm64 zip arm64 3.0-12 [156 kB] Get:51 http://ftpmaster.internal/ubuntu impish/main arm64 unzip arm64 6.0-26ubuntu1 [160 kB] Get:52 http://ftpmaster.internal/ubuntu impish/main arm64 libpaper1 arm64 1.1.28 [12.7 kB] Get:53 http://ftpmaster.internal/ubuntu impish/main arm64 libpaper-utils arm64 1.1.28 [8328 B] Get:54 http://ftpmaster.internal/ubuntu impish/main arm64 xdg-utils all 1.1.3-2ubuntu2 [61.5 kB] Get:55 http://ftpmaster.internal/ubuntu impish/main arm64 libblas3 arm64 3.9.0-3ubuntu2 [112 kB] Get:56 http://ftpmaster.internal/ubuntu impish/main arm64 libbrotli1 arm64 1.0.9-2build2 [262 kB] Get:57 http://ftpmaster.internal/ubuntu impish/main arm64 libfreetype6 arm64 2.10.4+dfsg-1build1 [323 kB] Get:58 http://ftpmaster.internal/ubuntu impish/main arm64 fonts-dejavu-core all 2.37-2build1 [1041 kB] Get:59 http://ftpmaster.internal/ubuntu impish/main arm64 fontconfig-config all 2.13.1-4.2ubuntu3 [28.2 kB] Get:60 http://ftpmaster.internal/ubuntu impish/main arm64 libfontconfig1 arm64 2.13.1-4.2ubuntu3 [113 kB] Get:61 http://ftpmaster.internal/ubuntu impish/main arm64 libpixman-1-0 arm64 0.40.0-1build2 [137 kB] Get:62 http://ftpmaster.internal/ubuntu impish/main arm64 libxcb-render0 arm64 1.14-3ubuntu1 [14.7 kB] Get:63 http://ftpmaster.internal/ubuntu impish/main arm64 libxcb-shm0 arm64 1.14-3ubuntu1 [5596 B] Get:64 http://ftpmaster.internal/ubuntu impish/main arm64 libxrender1 arm64 1:0.9.10-1build2 [17.3 kB] Get:65 http://ftpmaster.internal/ubuntu impish/main arm64 libcairo2 arm64 1.16.0-5ubuntu1 [544 kB] Get:66 http://ftpmaster.internal/ubuntu impish/main arm64 libroken18-heimdal arm64 7.7.0+dfsg-2 [39.4 kB] Get:67 http://ftpmaster.internal/ubuntu impish/main arm64 libasn1-8-heimdal arm64 7.7.0+dfsg-2 [150 kB] Get:68 http://ftpmaster.internal/ubuntu impish/main arm64 libheimbase1-heimdal arm64 7.7.0+dfsg-2 [27.9 kB] Get:69 http://ftpmaster.internal/ubuntu impish/main arm64 libhcrypto4-heimdal arm64 7.7.0+dfsg-2 [84.8 kB] Get:70 http://ftpmaster.internal/ubuntu impish/main arm64 libwind0-heimdal arm64 7.7.0+dfsg-2 [47.2 kB] Get:71 http://ftpmaster.internal/ubuntu impish/main arm64 libhx509-5-heimdal arm64 7.7.0+dfsg-2 [98.6 kB] Get:72 http://ftpmaster.internal/ubuntu impish/main arm64 libkrb5-26-heimdal arm64 7.7.0+dfsg-2 [192 kB] Get:73 http://ftpmaster.internal/ubuntu impish/main arm64 libheimntlm0-heimdal arm64 7.7.0+dfsg-2 [14.8 kB] Get:74 http://ftpmaster.internal/ubuntu impish/main arm64 libgssapi3-heimdal arm64 7.7.0+dfsg-2 [88.4 kB] Get:75 http://ftpmaster.internal/ubuntu impish/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-2ubuntu1 [14.9 kB] Get:76 http://ftpmaster.internal/ubuntu impish/main arm64 libsasl2-2 arm64 2.1.27+dfsg-2ubuntu1 [48.4 kB] Get:77 http://ftpmaster.internal/ubuntu impish/main arm64 libldap-2.4-2 arm64 2.4.57+dfsg-2ubuntu1 [146 kB] Get:78 http://ftpmaster.internal/ubuntu impish/main arm64 libnghttp2-14 arm64 1.43.0-1 [68.5 kB] Get:79 http://ftpmaster.internal/ubuntu impish/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2build2 [53.1 kB] Get:80 http://ftpmaster.internal/ubuntu impish/main arm64 libssh-4 arm64 0.9.5-1 [160 kB] Get:81 http://ftpmaster.internal/ubuntu impish/main arm64 libcurl4 arm64 7.74.0-1ubuntu2 [231 kB] Get:82 http://ftpmaster.internal/ubuntu impish/main arm64 libjpeg-turbo8 arm64 2.0.6-0ubuntu2 [99.9 kB] Get:83 http://ftpmaster.internal/ubuntu impish/main arm64 libjpeg8 arm64 8c-2ubuntu8 [2198 B] Get:84 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libgfortran5 arm64 11.1.0-1ubuntu1 [347 kB] Get:85 http://ftpmaster.internal/ubuntu impish/main arm64 liblapack3 arm64 3.9.0-3ubuntu2 [1626 kB] Get:86 http://ftpmaster.internal/ubuntu impish/main arm64 fontconfig arm64 2.13.1-4.2ubuntu3 [181 kB] Get:87 http://ftpmaster.internal/ubuntu impish/main arm64 libgraphite2-3 arm64 1.3.14-1 [67.8 kB] Get:88 http://ftpmaster.internal/ubuntu impish/main arm64 libharfbuzz0b arm64 2.7.4-1ubuntu1 [318 kB] Get:89 http://ftpmaster.internal/ubuntu impish/main arm64 libthai-data all 0.1.28-4 [134 kB] Get:90 http://ftpmaster.internal/ubuntu impish/main arm64 libdatrie1 arm64 0.2.13-1ubuntu2 [18.7 kB] Get:91 http://ftpmaster.internal/ubuntu impish/main arm64 libthai0 arm64 0.1.28-4 [16.7 kB] Get:92 http://ftpmaster.internal/ubuntu impish/main arm64 libpango-1.0-0 arm64 1.48.2-1build2 [159 kB] Get:93 http://ftpmaster.internal/ubuntu impish/main arm64 libpangoft2-1.0-0 arm64 1.48.2-1build2 [34.1 kB] Get:94 http://ftpmaster.internal/ubuntu impish/main arm64 libpangocairo-1.0-0 arm64 1.48.2-1build2 [22.9 kB] Get:95 http://ftpmaster.internal/ubuntu impish/main arm64 libtcl8.6 arm64 8.6.11+dfsg-1 [858 kB] Get:96 http://ftpmaster.internal/ubuntu impish/main arm64 libdeflate0 arm64 1.7-1ubuntu1 [47.4 kB] Get:97 http://ftpmaster.internal/ubuntu impish/main arm64 libjbig0 arm64 2.1-3.1build1 [24.0 kB] Get:98 http://ftpmaster.internal/ubuntu impish/main arm64 libwebp6 arm64 0.6.1-2 [155 kB] Get:99 http://ftpmaster.internal/ubuntu impish/main arm64 libtiff5 arm64 4.2.0-1build1 [155 kB] Get:100 http://ftpmaster.internal/ubuntu impish/main arm64 libxft2 arm64 2.3.3-0ubuntu3 [36.1 kB] Get:101 http://ftpmaster.internal/ubuntu impish/main arm64 x11-common all 1:7.7+22ubuntu1 [22.3 kB] Get:102 http://ftpmaster.internal/ubuntu impish/main arm64 libxss1 arm64 1:1.2.3-1 [8080 B] Get:103 http://ftpmaster.internal/ubuntu impish/main arm64 libtk8.6 arm64 8.6.11-2 [678 kB] Get:104 http://ftpmaster.internal/ubuntu impish/main arm64 libice6 arm64 2:1.0.10-1 [37.2 kB] Get:105 http://ftpmaster.internal/ubuntu impish/main arm64 libsm6 arm64 2:1.2.3-1 [15.1 kB] Get:106 http://ftpmaster.internal/ubuntu impish/main arm64 libxt6 arm64 1:1.2.0-1 [147 kB] Get:107 http://ftpmaster.internal/ubuntu impish/universe arm64 r-base-core arm64 4.0.4-1build1 [24.8 MB] Get:108 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libgfortran-10-dev arm64 10.3.0-2ubuntu1 [399 kB] Get:109 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 gfortran-10 arm64 10.3.0-2ubuntu1 [8691 kB] Get:110 http://ftpmaster.internal/ubuntu impish/main arm64 gfortran arm64 4:10.3.0-1ubuntu3 [1364 B] Get:111 http://ftpmaster.internal/ubuntu impish/main arm64 libblas-dev arm64 3.9.0-3ubuntu2 [91.6 kB] Get:112 http://ftpmaster.internal/ubuntu impish/main arm64 liblapack-dev arm64 3.9.0-3ubuntu2 [2724 kB] Get:113 http://ftpmaster.internal/ubuntu impish/main arm64 libncurses-dev arm64 6.2+20201114-2build1 [334 kB] Get:114 http://ftpmaster.internal/ubuntu impish/main arm64 libncurses5-dev arm64 6.2+20201114-2build1 [996 B] Get:115 http://ftpmaster.internal/ubuntu impish/main arm64 libreadline-dev arm64 8.1-1 [153 kB] Get:116 http://ftpmaster.internal/ubuntu impish/main arm64 libjpeg-turbo8-dev arm64 2.0.6-0ubuntu2 [215 kB] Get:117 http://ftpmaster.internal/ubuntu impish/main arm64 libjpeg8-dev arm64 8c-2ubuntu8 [1550 B] Get:118 http://ftpmaster.internal/ubuntu impish/main arm64 libjpeg-dev arm64 8c-2ubuntu8 [1546 B] Get:119 http://ftpmaster.internal/ubuntu impish/main arm64 libpcre2-16-0 arm64 10.36-2ubuntu5 [158 kB] Get:120 http://ftpmaster.internal/ubuntu impish/main arm64 libpcre2-32-0 arm64 10.36-2ubuntu5 [151 kB] Get:121 http://ftpmaster.internal/ubuntu impish/main arm64 libpcre2-posix2 arm64 10.36-2ubuntu5 [5820 B] Get:122 http://ftpmaster.internal/ubuntu impish/main arm64 libpcre2-dev arm64 10.36-2ubuntu5 [599 kB] Get:123 http://ftpmaster.internal/ubuntu impish/main arm64 libpcre16-3 arm64 2:8.39-13build3 [129 kB] Get:124 http://ftpmaster.internal/ubuntu impish/main arm64 libpcre32-3 arm64 2:8.39-13build3 [122 kB] Get:125 http://ftpmaster.internal/ubuntu impish/main arm64 libpcrecpp0v5 arm64 2:8.39-13build3 [14.5 kB] Get:126 http://ftpmaster.internal/ubuntu impish/main arm64 libpcre3-dev arm64 2:8.39-13build3 [475 kB] Get:127 http://ftpmaster.internal/ubuntu impish/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2ubuntu6 [154 kB] Get:128 http://ftpmaster.internal/ubuntu impish/main arm64 libpng-dev arm64 1.6.37-3build3 [175 kB] Get:129 http://ftpmaster.internal/ubuntu impish/main arm64 libbz2-dev arm64 1.0.8-4ubuntu3 [30.8 kB] Get:130 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 liblzma-dev arm64 5.2.5-2 [149 kB] Get:131 http://ftpmaster.internal/ubuntu impish/main arm64 icu-devtools arm64 67.1-6ubuntu2 [170 kB] Get:132 http://ftpmaster.internal/ubuntu impish/main arm64 libicu-dev arm64 67.1-6ubuntu2 [9456 kB] Get:133 http://ftpmaster.internal/ubuntu impish/main arm64 pkg-config arm64 0.29.2-1ubuntu1 [44.5 kB] Get:134 http://ftpmaster.internal/ubuntu impish/universe arm64 r-base-dev all 4.0.4-1build1 [4524 B] Get:135 http://ftpmaster.internal/ubuntu impish/main arm64 libfile-which-perl all 1.23-1 [13.8 kB] Get:136 http://ftpmaster.internal/ubuntu impish/universe arm64 libswitch-perl all 2.17-2.1 [18.3 kB] Get:137 http://ftpmaster.internal/ubuntu impish/main arm64 libencode-locale-perl all 1.05-1.1 [11.8 kB] Get:138 http://ftpmaster.internal/ubuntu impish/main arm64 libtimedate-perl all 2.3300-2 [34.0 kB] Get:139 http://ftpmaster.internal/ubuntu impish/main arm64 libhttp-date-perl all 6.05-1 [9920 B] Get:140 http://ftpmaster.internal/ubuntu impish/main arm64 libio-html-perl all 1.004-2 [15.4 kB] Get:141 http://ftpmaster.internal/ubuntu impish/main arm64 liblwp-mediatypes-perl all 6.04-1 [19.5 kB] Get:142 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 liburi-perl all 5.08-1 [77.4 kB] Get:143 http://ftpmaster.internal/ubuntu impish-proposed/main arm64 libhttp-message-perl all 6.29-1 [75.5 kB] Get:144 http://ftpmaster.internal/ubuntu impish/main arm64 libparams-util-perl arm64 1.102-1build1 [21.4 kB] Get:145 http://ftpmaster.internal/ubuntu impish/main arm64 libsub-install-perl all 0.928-1.1 [9972 B] Get:146 http://ftpmaster.internal/ubuntu impish/main arm64 libdata-optlist-perl all 0.110-1.1 [10.2 kB] Get:147 http://ftpmaster.internal/ubuntu impish/main arm64 libb-hooks-op-check-perl arm64 0.22-1build3 [10.2 kB] Get:148 http://ftpmaster.internal/ubuntu impish/main arm64 libdynaloader-functions-perl all 0.003-1.1 [12.1 kB] Get:149 http://ftpmaster.internal/ubuntu impish/main arm64 libdevel-callchecker-perl arm64 0.008-1ubuntu2 [14.4 kB] Get:150 http://ftpmaster.internal/ubuntu impish/main arm64 libparams-classify-perl arm64 0.015-1build3 [20.8 kB] Get:151 http://ftpmaster.internal/ubuntu impish/main arm64 libmodule-runtime-perl all 0.016-1 [16.2 kB] Get:152 http://ftpmaster.internal/ubuntu impish/main arm64 libtry-tiny-perl all 0.30-1 [20.5 kB] Get:153 http://ftpmaster.internal/ubuntu impish/main arm64 libmodule-implementation-perl all 0.09-1.1 [11.6 kB] Get:154 http://ftpmaster.internal/ubuntu impish/main arm64 libpackage-stash-perl all 0.39-1 [19.1 kB] Get:155 http://ftpmaster.internal/ubuntu impish/universe arm64 libclass-load-perl all 0.25-1 [13.5 kB] Get:156 http://ftpmaster.internal/ubuntu impish/universe arm64 libclass-load-xs-perl arm64 0.10-1build6 [13.3 kB] Get:157 http://ftpmaster.internal/ubuntu impish/main arm64 libsub-exporter-progressive-perl all 0.001013-1 [6784 B] Get:158 http://ftpmaster.internal/ubuntu impish/universe arm64 libdevel-globaldestruction-perl all 0.14-1.1 [6916 B] Get:159 http://ftpmaster.internal/ubuntu impish/universe arm64 libalgorithm-c3-perl all 0.11-1 [11.0 kB] Get:160 http://ftpmaster.internal/ubuntu impish/universe arm64 libclass-c3-perl all 0.35-1 [19.0 kB] Get:161 http://ftpmaster.internal/ubuntu impish/universe arm64 libmro-compat-perl all 0.13-1 [11.2 kB] Get:162 http://ftpmaster.internal/ubuntu impish/main arm64 libsub-identify-perl arm64 0.14-1build3 [10.5 kB] Get:163 http://ftpmaster.internal/ubuntu impish/universe arm64 libdevel-overloadinfo-perl all 0.005-1 [6780 B] Get:164 http://ftpmaster.internal/ubuntu impish/main arm64 libdevel-stacktrace-perl all 2.0400-1 [22.7 kB] Get:165 http://ftpmaster.internal/ubuntu impish/main arm64 libsub-exporter-perl all 0.987-1 [44.9 kB] Get:166 http://ftpmaster.internal/ubuntu impish/universe arm64 libeval-closure-perl all 0.14-1 [10.3 kB] Get:167 http://ftpmaster.internal/ubuntu impish/universe arm64 libdist-checkconflicts-perl all 0.11-1.1 [9632 B] Get:168 http://ftpmaster.internal/ubuntu impish/universe arm64 libmodule-runtime-conflicts-perl all 0.003-1.1 [6836 B] Get:169 http://ftpmaster.internal/ubuntu impish/main arm64 libsub-name-perl arm64 0.26-1build1 [11.1 kB] Get:170 http://ftpmaster.internal/ubuntu impish/universe arm64 libpackage-deprecationmanager-perl all 0.17-1.1 [15.5 kB] Get:171 http://ftpmaster.internal/ubuntu impish/main arm64 libpackage-stash-xs-perl arm64 0.29-1build3 [17.8 kB] Get:172 http://ftpmaster.internal/ubuntu impish/universe arm64 libmoose-perl arm64 2.2014-2 [743 kB] Get:173 http://ftpmaster.internal/ubuntu impish/main arm64 libvariable-magic-perl arm64 0.62-1build3 [32.5 kB] Get:174 http://ftpmaster.internal/ubuntu impish/main arm64 libb-hooks-endofscope-perl all 0.24-1.1 [17.0 kB] Get:175 http://ftpmaster.internal/ubuntu impish/main arm64 libnamespace-clean-perl all 0.27-1 [13.6 kB] Get:176 http://ftpmaster.internal/ubuntu impish/main arm64 libcurl3-gnutls arm64 7.74.0-1ubuntu2 [228 kB] Get:177 http://ftpmaster.internal/ubuntu impish/universe arm64 libwww-curl-perl arm64 4.17-7build1 [49.6 kB] Get:178 http://ftpmaster.internal/ubuntu impish/universe arm64 libwww-curl-simple-perl all 0.100191-2 [10.9 kB] Get:179 http://ftpmaster.internal/ubuntu impish/universe arm64 dh-r all 20210218ubuntu1 [36.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 78.8 MB in 3s (24.9 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 13126 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.36.1-7ubuntu2_arm64.deb ... Unpacking bsdextrautils (2.36.1-7ubuntu2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../001-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-6_arm64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../003-libpipeline1_1.5.3-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.4-2_arm64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libmd0:arm64. Preparing to unpack .../005-libmd0_1.0.3-3build1_arm64.deb ... Unpacking libmd0:arm64 (1.0.3-3build1) ... 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Setting up libdynaloader-functions-perl (0.003-1.1) ... Setting up libdatrie1:arm64 (0.2.13-1ubuntu2) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libsub-identify-perl (0.14-1build3) ... Setting up libglib2.0-0:arm64 (2.68.0-1) ... No schema files found: doing nothing. Setting up unzip (6.0-26ubuntu1) ... Setting up libdebhelper-perl (13.3.4ubuntu1) ... Setting up libbrotli1:arm64 (1.0.9-2build2) ... Setting up liblwp-mediatypes-perl (6.04-1) ... Setting up x11-common (1:7.7+22ubuntu1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libtry-tiny-perl (0.30-1) ... Setting up libnghttp2-14:arm64 (1.43.0-1) ... Setting up libmagic1:arm64 (1:5.39-3) ... Setting up libdeflate0:arm64 (1.7-1ubuntu1) ... Setting up gettext-base (0.21-3ubuntu2) ... Setting up libencode-locale-perl (1.05-1.1) ... Setting up file (1:5.39-3) ... Setting up libreadline-dev:arm64 (8.1-1) ... Setting up libjbig0:arm64 (2.1-3.1build1) ... Setting up libpcre2-16-0:arm64 (10.36-2ubuntu5) ... Setting up libsub-install-perl (0.928-1.1) ... Setting up libsasl2-modules-db:arm64 (2.1.27+dfsg-2ubuntu1) ... Setting up zip (3.0-12) ... Setting up libpackage-stash-xs-perl (0.29-1build3) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libpcre2-32-0:arm64 (10.36-2ubuntu5) ... Setting up libblas3:arm64 (3.9.0-3ubuntu2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libalgorithm-c3-perl (0.11-1) ... Setting up libswitch-perl (2.17-2.1) ... Setting up libfreetype6:arm64 (2.10.4+dfsg-1build1) ... Setting up libx11-data (2:1.7.0-2build2) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2build2) ... Setting up libsigsegv2:arm64 (2.13-1ubuntu1) ... Setting up libfribidi0:arm64 (1.0.8-2ubuntu1) ... Setting up libpcre32-3:arm64 (2:8.39-13build3) ... Setting up libvariable-magic-perl (0.62-1build3) ... Setting up libio-html-perl (1.004-2) ... Setting up libtcl8.6:arm64 (8.6.11+dfsg-1) ... Setting up autopoint (0.21-3ubuntu2) ... Setting up libwebp6:arm64 (0.6.1-2) ... Setting up libb-hooks-op-check-perl (0.22-1build3) ... Setting up icu-devtools (67.1-6ubuntu2) ... Setting up pkg-config (0.29.2-1ubuntu1) ... Setting up fonts-dejavu-core (2.37-2build1) ... Setting up ucf (3.0043) ... Setting up libpcre2-posix2:arm64 (10.36-2ubuntu5) ... Setting up libjpeg-turbo8:arm64 (2.0.6-0ubuntu2) ... Setting up libparams-util-perl (1.102-1build1) ... Setting up libsasl2-2:arm64 (2.1.27+dfsg-2ubuntu1) ... Setting up libssh-4:arm64 (0.9.5-1) ... Setting up libgfortran5:arm64 (11.1.0-1ubuntu1) ... Setting up libroken18-heimdal:arm64 (7.7.0+dfsg-2) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up liblzma-dev:arm64 (5.2.5-2) ... Setting up libsub-name-perl (0.26-1build1) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-2ubuntu6) ... Setting up libmd0:arm64 (1.0.3-3build1) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libncurses5-dev:arm64 (6.2+20201114-2build1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libharfbuzz0b:arm64 (2.7.4-1ubuntu1) ... Setting up libthai-data (0.1.28-4) ... Setting up libgfortran-10-dev:arm64 (10.3.0-2ubuntu1) ... Setting up libdevel-globaldestruction-perl (0.14-1.1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libbsd0:arm64 (0.11.3-1ubuntu2) ... Setting up libelf1:arm64 (0.183-8) ... Setting up libicu-dev:arm64 (67.1-6ubuntu2) ... Setting up libxml2:arm64 (2.9.10+dfsg-6.3build2) ... Setting up xdg-utils (1.1.3-2ubuntu2) ... Setting up liburi-perl (5.08-1) ... Setting up libblas-dev:arm64 (3.9.0-3ubuntu2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode Setting up dctrl-tools (2.24-3) ... Setting up libheimbase1-heimdal:arm64 (7.7.0+dfsg-2) ... Setting up libbz2-dev:arm64 (1.0.8-4ubuntu3) ... Setting up libjpeg8:arm64 (8c-2ubuntu8) ... Setting up libfile-stripnondeterminism-perl (1.11.0-1) ... Setting up libpaper1:arm64 (1.1.28) ... Creating config file /etc/papersize with new version Setting up libice6:arm64 (2:1.0.10-1) ... Setting up libhttp-date-perl (6.05-1) ... Setting up libdw1:arm64 (0.183-8) ... Setting up libjpeg-turbo8-dev:arm64 (2.0.6-0ubuntu2) ... Setting up libxdmcp6:arm64 (1:1.1.3-0ubuntu3) ... Setting up liblapack3:arm64 (3.9.0-3ubuntu2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libxcb1:arm64 (1.14-3ubuntu1) ... Setting up gettext (0.21-3ubuntu2) ... Setting up libpcre2-dev:arm64 (10.36-2ubuntu5) ... Setting up libtool (2.4.6-15) ... Setting up libxcb-render0:arm64 (1.14-3ubuntu1) ... Setting up libpcre3-dev:arm64 (2:8.39-13build3) ... Setting up fontconfig-config (2.13.1-4.2ubuntu3) ... Setting up libasn1-8-heimdal:arm64 (7.7.0+dfsg-2) ... Setting up libpng-dev:arm64 (1.6.37-3build3) ... Setting up m4 (1.4.18-5) ... Setting up libxcb-shm0:arm64 (1.14-3ubuntu1) ... Setting up libpaper-utils (1.1.28) ... Setting up libclass-c3-perl (0.35-1) ... Setting up libdevel-callchecker-perl (0.008-1ubuntu2) ... Setting up libhcrypto4-heimdal:arm64 (7.7.0+dfsg-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libthai0:arm64 (0.1.28-4) ... Setting up libwind0-heimdal:arm64 (7.7.0+dfsg-2) ... Setting up liblapack-dev:arm64 (3.9.0-3ubuntu2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode Setting up gfortran-10 (10.3.0-2ubuntu1) ... Setting up libdata-optlist-perl (0.110-1.1) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.11.0-1) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-6) ... Setting up debugedit (1:0.1-0ubuntu2) ... Setting up libx11-6:arm64 (2:1.7.0-2build2) ... Setting up libtiff5:arm64 (4.2.0-1build1) ... Setting up libfontconfig1:arm64 (2.13.1-4.2ubuntu3) ... Setting up libmro-compat-perl (0.13-1) ... Setting up libjpeg8-dev:arm64 (8c-2ubuntu8) ... Setting up libsm6:arm64 (2:1.2.3-1) ... Setting up libxmuu1:arm64 (2:1.1.3-0ubuntu1) ... Setting up libsub-exporter-perl (0.987-1) ... Setting up libhttp-message-perl (6.29-1) ... Setting up libeval-closure-perl (0.14-1) ... Setting up automake (1:1.16.3-2ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up fontconfig (2.13.1-4.2ubuntu3) ... Regenerating fonts cache... done. Setting up libxrender1:arm64 (1:0.9.10-1build2) ... Setting up libhx509-5-heimdal:arm64 (7.7.0+dfsg-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libparams-classify-perl (0.015-1build3) ... Setting up libpango-1.0-0:arm64 (1.48.2-1build2) ... Setting up libjpeg-dev:arm64 (8c-2ubuntu8) ... Setting up libxext6:arm64 (2:1.3.4-0ubuntu3) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up gfortran (4:10.3.0-1ubuntu3) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:arm64 (1.16.0-5ubuntu1) ... Setting up dh-autoreconf (20) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libdist-checkconflicts-perl (0.11-1.1) ... Setting up libxt6:arm64 (1:1.2.0-1) ... Setting up xauth (1:1.1-1) ... Setting up libxss1:arm64 (1:1.2.3-1) ... Setting up libpangoft2-1.0-0:arm64 (1.48.2-1build2) ... Setting up libpangocairo-1.0-0:arm64 (1.48.2-1build2) ... Setting up libkrb5-26-heimdal:arm64 (7.7.0+dfsg-2) ... Setting up libxft2:arm64 (2.3.3-0ubuntu3) ... Setting up libmodule-implementation-perl (0.09-1.1) ... Setting up libpackage-stash-perl (0.39-1) ... Setting up libtk8.6:arm64 (8.6.11-2) ... Setting up debhelper (13.3.4ubuntu1) ... Setting up libmodule-runtime-conflicts-perl (0.003-1.1) ... Setting up libheimntlm0-heimdal:arm64 (7.7.0+dfsg-2) ... Setting up libclass-load-perl (0.25-1) ... Setting up libgssapi3-heimdal:arm64 (7.7.0+dfsg-2) ... Setting up libpackage-deprecationmanager-perl (0.17-1.1) ... Setting up libdevel-overloadinfo-perl (0.005-1) ... Setting up libclass-load-xs-perl (0.10-1build6) ... Setting up libb-hooks-endofscope-perl (0.24-1.1) ... Setting up libmoose-perl (2.2014-2) ... Setting up libldap-2.4-2:arm64 (2.4.57+dfsg-2ubuntu1) ... Setting up libcurl3-gnutls:arm64 (7.74.0-1ubuntu2) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up libcurl4:arm64 (7.74.0-1ubuntu2) ... Setting up libwww-curl-perl (4.17-7build1) ... Setting up r-base-core (4.0.4-1build1) ... Creating config file /etc/R/Renviron with new version Setting up r-base-dev (4.0.4-1build1) ... Setting up libwww-curl-simple-perl (0.100191-2) ... Setting up dh-r (20210218ubuntu1) ... Setting up sbuild-build-depends-r-bioc-affxparser-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.33-0ubuntu6) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-142-generic arm64 (aarch64) Toolchain package versions: binutils_2.36.1-6ubuntu1 dpkg-dev_1.20.9ubuntu1 g++-10_10.3.0-2ubuntu1 gcc-10_10.3.0-2ubuntu1 libc6-dev_2.33-0ubuntu6 libstdc++-10-dev_10.3.0-2ubuntu1 libstdc++6_11.1.0-1ubuntu1 linux-libc-dev_5.11.0-16.17 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1build1 apt_2.3.2 autoconf_2.69-14 automake_1:1.16.3-2ubuntu1 autopoint_0.21-3ubuntu2 autotools-dev_20180224.1+nmu1 base-files_11.1ubuntu2 base-passwd_3.5.49 bash_5.1-2ubuntu1 binutils_2.36.1-6ubuntu1 binutils-aarch64-linux-gnu_2.36.1-6ubuntu1 binutils-common_2.36.1-6ubuntu1 bsdextrautils_2.36.1-7ubuntu2 bsdutils_1:2.36.1-7ubuntu2 build-essential_12.9ubuntu1 bzip2_1.0.8-4ubuntu3 ca-certificates_20210119build1 coreutils_8.32-4ubuntu2 cpp_4:10.3.0-1ubuntu3 cpp-10_10.3.0-2ubuntu1 dash_0.5.11+git20200708+dd9ef66+really0.5.11+git20200708+dd9ef66-5ubuntu1 dctrl-tools_2.24-3 debconf_1.5.76 debhelper_13.3.4ubuntu1 debianutils_4.11.2 debugedit_1:0.1-0ubuntu2 dh-autoreconf_20 dh-r_20210218ubuntu1 dh-strip-nondeterminism_1.11.0-1 diffutils_1:3.7-5ubuntu1 dpkg_1.20.9ubuntu1 dpkg-dev_1.20.9ubuntu1 dwz_0.14-1 e2fsprogs_1.45.7-1ubuntu2 fakeroot_1.25.3-1.1ubuntu2 file_1:5.39-3 findutils_4.8.0-1ubuntu1 fontconfig_2.13.1-4.2ubuntu3 fontconfig-config_2.13.1-4.2ubuntu3 fonts-dejavu-core_2.37-2build1 g++_4:10.3.0-1ubuntu3 g++-10_10.3.0-2ubuntu1 gcc_4:10.3.0-1ubuntu3 gcc-10_10.3.0-2ubuntu1 gcc-10-base_10.3.0-2ubuntu1 gcc-11-base_11.1.0-1ubuntu1 gettext_0.21-3ubuntu2 gettext-base_0.21-3ubuntu2 gfortran_4:10.3.0-1ubuntu3 gfortran-10_10.3.0-2ubuntu1 gpg_2.2.20-1ubuntu3 gpg-agent_2.2.20-1ubuntu3 gpgconf_2.2.20-1ubuntu3 gpgv_2.2.20-1ubuntu3 grep_3.6-1 groff-base_1.22.4-6 gzip_1.10-4ubuntu1 hostname_3.23 icu-devtools_67.1-6ubuntu2 init_1.60 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10ubuntu1 libalgorithm-c3-perl_0.11-1 libapparmor1_3.0.0-0ubuntu7 libapt-pkg6.0_2.3.2 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.2build21.04.0 libasan6_11.1.0-1ubuntu1 libasn1-8-heimdal_7.7.0+dfsg-2 libassuan0_2.5.4-1ubuntu1 libatomic1_11.1.0-1ubuntu1 libattr1_1:2.4.48-6build1 libaudit-common_1:3.0-2ubuntu1 libaudit1_1:3.0-2ubuntu1 libb-hooks-endofscope-perl_0.24-1.1 libb-hooks-op-check-perl_0.22-1build3 libbinutils_2.36.1-6ubuntu1 libblas-dev_3.9.0-3ubuntu2 libblas3_3.9.0-3ubuntu2 libblkid1_2.36.1-7ubuntu2 libbrotli1_1.0.9-2build2 libbsd0_0.11.3-1ubuntu2 libbz2-1.0_1.0.8-4ubuntu3 libbz2-dev_1.0.8-4ubuntu3 libc-bin_2.33-0ubuntu6 libc-dev-bin_2.33-0ubuntu6 libc6_2.33-0ubuntu6 libc6-dev_2.33-0ubuntu6 libcairo2_1.16.0-5ubuntu1 libcap-ng0_0.7.9-2.2build1 libcap2_1:2.44-1build1 libcc1-0_11.1.0-1ubuntu1 libclass-c3-perl_0.35-1 libclass-load-perl_0.25-1 libclass-load-xs-perl_0.10-1build6 libcom-err2_1.45.7-1ubuntu2 libcrypt-dev_1:4.4.17-1ubuntu3 libcrypt1_1:4.4.17-1ubuntu3 libcryptsetup12_2:2.3.4-1ubuntu3 libctf-nobfd0_2.36.1-6ubuntu1 libctf0_2.36.1-6ubuntu1 libcurl3-gnutls_7.74.0-1ubuntu2 libcurl4_7.74.0-1ubuntu2 libdata-optlist-perl_0.110-1.1 libdatrie1_0.2.13-1ubuntu2 libdb5.3_5.3.28+dfsg1-0.6ubuntu4 libdebconfclient0_0.256ubuntu3 libdebhelper-perl_13.3.4ubuntu1 libdeflate0_1.7-1ubuntu1 libdevel-callchecker-perl_0.008-1ubuntu2 libdevel-globaldestruction-perl_0.14-1.1 libdevel-overloadinfo-perl_0.005-1 libdevel-stacktrace-perl_2.0400-1 libdevmapper1.02.1_2:1.02.175-2ubuntu4 libdist-checkconflicts-perl_0.11-1.1 libdpkg-perl_1.20.9ubuntu1 libdw1_0.183-8 libdynaloader-functions-perl_0.003-1.1 libelf1_0.183-8 libencode-locale-perl_1.05-1.1 libeval-closure-perl_0.14-1 libexpat1_2.2.10-2 libext2fs2_1.45.7-1ubuntu2 libfakeroot_1.25.3-1.1ubuntu2 libffi8ubuntu1_3.4~20200819gead65ca871-0ubuntu5 libfile-stripnondeterminism-perl_1.11.0-1 libfile-which-perl_1.23-1 libfontconfig1_2.13.1-4.2ubuntu3 libfreetype6_2.10.4+dfsg-1build1 libfribidi0_1.0.8-2ubuntu1 libgcc-10-dev_10.3.0-2ubuntu1 libgcc-s1_11.1.0-1ubuntu1 libgcrypt20_1.8.7-2ubuntu2 libgdbm-compat4_1.19-2 libgdbm6_1.19-2 libgfortran-10-dev_10.3.0-2ubuntu1 libgfortran5_11.1.0-1ubuntu1 libglib2.0-0_2.68.0-1 libgmp10_2:6.2.1+dfsg-1ubuntu2 libgnutls30_3.7.1-3ubuntu1 libgomp1_11.1.0-1ubuntu1 libgpg-error0_1.38-2build1 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.18.3-5 libgssapi3-heimdal_7.7.0+dfsg-2 libharfbuzz0b_2.7.4-1ubuntu1 libhcrypto4-heimdal_7.7.0+dfsg-2 libheimbase1-heimdal_7.7.0+dfsg-2 libheimntlm0-heimdal_7.7.0+dfsg-2 libhogweed6_3.7-2.1ubuntu1 libhttp-date-perl_6.05-1 libhttp-message-perl_6.29-1 libhx509-5-heimdal_7.7.0+dfsg-2 libice6_2:1.0.10-1 libicu-dev_67.1-6ubuntu2 libicu67_67.1-6ubuntu2 libidn2-0_2.3.0-5 libio-html-perl_1.004-2 libip4tc2_1.8.7-1ubuntu2 libisl23_0.23-1build1 libitm1_11.1.0-1ubuntu1 libjbig0_2.1-3.1build1 libjpeg-dev_8c-2ubuntu8 libjpeg-turbo8_2.0.6-0ubuntu2 libjpeg-turbo8-dev_2.0.6-0ubuntu2 libjpeg8_8c-2ubuntu8 libjpeg8-dev_8c-2ubuntu8 libjson-c5_0.15-2build2 libk5crypto3_1.18.3-5 libkeyutils1_1.6.1-2ubuntu1 libkmod2_28-1ubuntu2 libkrb5-26-heimdal_7.7.0+dfsg-2 libkrb5-3_1.18.3-5 libkrb5support0_1.18.3-5 liblapack-dev_3.9.0-3ubuntu2 liblapack3_3.9.0-3ubuntu2 libldap-2.4-2_2.4.57+dfsg-2ubuntu1 liblockfile-bin_1.17-1 liblockfile1_1.17-1 liblsan0_11.1.0-1ubuntu1 liblwp-mediatypes-perl_6.04-1 liblz4-1_1.9.3-1build1 liblzma-dev_5.2.5-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmd0_1.0.3-3build1 libmodule-implementation-perl_0.09-1.1 libmodule-runtime-conflicts-perl_0.003-1.1 libmodule-runtime-perl_0.016-1 libmoose-perl_2.2014-2 libmount1_2.36.1-7ubuntu2 libmpc3_1.2.0-1build1 libmpfr6_4.1.0-3build1 libmro-compat-perl_0.13-1 libnamespace-clean-perl_0.27-1 libncurses-dev_6.2+20201114-2build1 libncurses5-dev_6.2+20201114-2build1 libncurses6_6.2+20201114-2build1 libncursesw6_6.2+20201114-2build1 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make_4.3-4ubuntu1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.36.1-7ubuntu2 ncurses-base_6.2+20201114-2build1 ncurses-bin_6.2+20201114-2build1 openssl_1.1.1j-1ubuntu3 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu8 patch_2.7.6-7 perl_5.32.1-3ubuntu2 perl-base_5.32.1-3ubuntu2 perl-modules-5.32_5.32.1-3ubuntu2 pinentry-curses_1.1.0-4build1 pkg-config_0.29.2-1ubuntu1 pkgbinarymangler_147 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-5ubuntu3 r-base-core_4.0.4-1build1 r-base-dev_4.0.4-1build1 readline-common_8.1-1 rpcsvc-proto_1.4.2-0ubuntu4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-affxparser-dummy_0.invalid.0 sed_4.7-1ubuntu1 sensible-utils_0.0.14 systemd_247.3-3ubuntu3 systemd-sysv_247.3-3ubuntu3 systemd-timesyncd_247.3-3ubuntu3 sysvinit-utils_2.96-7ubuntu1 tar_1.34+dfsg-1build1 tzdata_2021a-1ubuntu1 ubuntu-keyring_2021.03.26 ucf_3.0043 unzip_6.0-26ubuntu1 usrmerge_24ubuntu3 util-linux_2.36.1-7ubuntu2 x11-common_1:7.7+22ubuntu1 xauth_1:1.1-1 xdg-utils_1.1.3-2ubuntu2 xz-utils_5.2.5-2 zip_3.0-12 zlib1g_1:1.2.11.dfsg-2ubuntu6 zlib1g-dev_1:1.2.11.dfsg-2ubuntu6 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Fri Apr 30 09:34:07 2021 UTC gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-bioc-affxparser_1.62.0-2.dsc dpkg-source: info: extracting r-bioc-affxparser in /<> dpkg-source: info: unpacking r-bioc-affxparser_1.62.0.orig.tar.gz dpkg-source: info: unpacking r-bioc-affxparser_1.62.0-2.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-21483443 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-21483443 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-21483443 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package r-bioc-affxparser dpkg-buildpackage: info: source version 1.62.0-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary-arch dh binary-arch --buildsystem R dh_update_autotools_config -a -O--buildsystem=R dh_autoreconf -a -O--buildsystem=R dh_auto_configure -a -O--buildsystem=R dh_auto_build -a -O--buildsystem=R dh_auto_test -a -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=R dh_prep -a -O--buildsystem=R debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install I: R packages needed for DEP8: I: R Package: affxparser Version: 1.62.0 I: Building using R version 4.0.4-1build1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Fri, 30 Apr 2021 14:58:40 +0530 mkdir -p /<>/debian/r-bioc-affxparser/usr/lib/R/site-library R CMD INSTALL -l /<>/debian/r-bioc-affxparser/usr/lib/R/site-library --clean . "--built-timestamp='Fri, 30 Apr 2021 14:58:40 +0530'" * installing *source* package ‘affxparser’ ... ** using staged installation ** libs make[2]: Entering directory '/<>/src' rm -f fusion_sdk/calvin_files/data/src/CDFData.o fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.o fusion_sdk/calvin_files/data/src/CDFProbeInformation.o fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.o fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.o fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.o fusion_sdk/calvin_files/data/src/CELData.o fusion_sdk/calvin_files/data/src/CHPBackgroundZone.o fusion_sdk/calvin_files/data/src/CHPData.o fusion_sdk/calvin_files/data/src/CHPExpressionEntry.o fusion_sdk/calvin_files/data/src/CHPMultiDataData.o fusion_sdk/calvin_files/data/src/CHPTilingData.o fusion_sdk/calvin_files/data/src/CHPQuantificationData.o fusion_sdk/calvin_files/data/src/CHPQuantificationDetectionData.o fusion_sdk/calvin_files/data/src/CHPGenotypeEntry.o fusion_sdk/calvin_files/data/src/CHPUniversalEntry.o fusion_sdk/calvin_files/data/src/ColumnInfo.o fusion_sdk/calvin_files/data/src/DataGroup.o fusion_sdk/calvin_files/data/src/DataGroupHeader.o fusion_sdk/calvin_files/data/src/DataSet.o fusion_sdk/calvin_files/data/src/DataSetHeader.o fusion_sdk/calvin_files/data/src/FileHeader.o fusion_sdk/calvin_files/data/src/GenericData.o fusion_sdk/calvin_files/data/src/GenericDataHeader.o fusion_sdk/calvin_files/exception/src/ExceptionBase.o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.o fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.o fusion_sdk/calvin_files/fusion/src/FusionCDFData.o fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.o fusion_sdk/calvin_files/fusion/src/FusionCELData.o fusion_sdk/calvin_files/fusion/src/FusionCHPData.o fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.o fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.o fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.o fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataData.o fusion_sdk/calvin_files/fusion/src/FusionCHPTilingData.o fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.o fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationData.o fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationDetectionData.o fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.o fusion_sdk/calvin_files/parsers/src/CDFFileReader.o fusion_sdk/calvin_files/parsers/src/CelFileReader.o fusion_sdk/calvin_files/parsers/src/CHPFileReader.o fusion_sdk/calvin_files/parsers/src/CHPMultiDataFileReader.o fusion_sdk/calvin_files/parsers/src/CHPTilingFileReader.o fusion_sdk/calvin_files/parsers/src/CHPQuantificationFileReader.o fusion_sdk/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.o fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.o fusion_sdk/calvin_files/parsers/src/DataGroupReader.o fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.o fusion_sdk/calvin_files/parsers/src/DataSetReader.o fusion_sdk/calvin_files/parsers/src/FileHeaderReader.o fusion_sdk/calvin_files/parsers/src/FileInput.o fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.o fusion_sdk/calvin_files/parsers/src/GenericFileReader.o fusion_sdk/calvin_files/utils/src/AffymetrixGuid.o fusion_sdk/calvin_files/utils/src/DateTime.o fusion_sdk/calvin_files/utils/src/FileUtils.o fusion_sdk/calvin_files/utils/src/StringUtils.o fusion_sdk/calvin_files/utils/src/checksum.o fusion_sdk/file/BPMAPFileData.o fusion_sdk/file/BPMAPFileWriter.o fusion_sdk/file/CDFFileData.o fusion_sdk/file/CELFileData.o fusion_sdk/file/CHPFileData.o fusion_sdk/file/FileIO.o fusion_sdk/file/FileWriter.o fusion_sdk/file/TsvFile/ClfFile.o fusion_sdk/file/TsvFile/PgfFile.o fusion_sdk/file/TsvFile/TsvFile.o fusion_sdk/util/AffxByteArray.o fusion_sdk/util/AffxConv.o fusion_sdk/util/MsgStream.o fusion_sdk/util/Util.o fusion_sdk/util/Err.o fusion_sdk/util/Fs.o fusion_sdk/util/Verbose.o fusion_sdk/util/RowFile.o fusion_sdk/util/TableFile.o fusion_sdk/util/Convert.o R_affx_cel_parser.o R_affx_cdf_parser.o R_affx_cdf_extras.o R_affx_bpmap_parser.o R_affx_clf_pgf_parser.o R_affx_chp_parser.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/data/src/CDFData.cpp -o fusion_sdk/calvin_files/data/src/CDFData.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFProbeInformation.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/data/src/CELData.cpp -o fusion_sdk/calvin_files/data/src/CELData.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/data/src/CHPBackgroundZone.cpp -o fusion_sdk/calvin_files/data/src/CHPBackgroundZone.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/data/src/CHPData.cpp -o fusion_sdk/calvin_files/data/src/CHPData.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/data/src/CHPExpressionEntry.cpp -o fusion_sdk/calvin_files/data/src/CHPExpressionEntry.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/data/src/CHPMultiDataData.cpp -o fusion_sdk/calvin_files/data/src/CHPMultiDataData.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/data/src/CHPTilingData.cpp -o fusion_sdk/calvin_files/data/src/CHPTilingData.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/data/src/CHPQuantificationData.cpp -o fusion_sdk/calvin_files/data/src/CHPQuantificationData.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/data/src/CHPQuantificationDetectionData.cpp -o fusion_sdk/calvin_files/data/src/CHPQuantificationDetectionData.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/data/src/CHPGenotypeEntry.cpp -o fusion_sdk/calvin_files/data/src/CHPGenotypeEntry.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/data/src/CHPUniversalEntry.cpp -o fusion_sdk/calvin_files/data/src/CHPUniversalEntry.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/data/src/ColumnInfo.cpp -o fusion_sdk/calvin_files/data/src/ColumnInfo.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/data/src/DataGroup.cpp -o fusion_sdk/calvin_files/data/src/DataGroup.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp -o fusion_sdk/calvin_files/data/src/DataGroupHeader.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/data/src/DataSet.cpp -o fusion_sdk/calvin_files/data/src/DataSet.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/data/src/DataSetHeader.cpp -o fusion_sdk/calvin_files/data/src/DataSetHeader.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/data/src/FileHeader.cpp -o fusion_sdk/calvin_files/data/src/FileHeader.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/data/src/GenericData.cpp -o fusion_sdk/calvin_files/data/src/GenericData.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/data/src/GenericDataHeader.cpp -o fusion_sdk/calvin_files/data/src/GenericDataHeader.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/exception/src/ExceptionBase.cpp -o fusion_sdk/calvin_files/exception/src/ExceptionBase.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp -o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.cpp -o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter 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-Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataData.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/fusion/src/FusionCHPTilingData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPTilingData.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationData.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationDetectionData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationDetectionData.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp -o fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CDFFileReader.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CelFileReader.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/parsers/src/CHPFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CHPFileReader.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/parsers/src/CHPMultiDataFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CHPMultiDataFileReader.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/parsers/src/CHPTilingFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CHPTilingFileReader.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/parsers/src/CHPQuantificationFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CHPQuantificationFileReader.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataGroupReader.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/parsers/src/DataSetReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataSetReader.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/FileHeaderReader.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/parsers/src/FileInput.cpp -o fusion_sdk/calvin_files/parsers/src/FileInput.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/GenericFileReader.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp -o fusion_sdk/calvin_files/utils/src/AffymetrixGuid.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/utils/src/DateTime.cpp -o fusion_sdk/calvin_files/utils/src/DateTime.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/utils/src/FileUtils.cpp -o fusion_sdk/calvin_files/utils/src/FileUtils.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/utils/src/StringUtils.cpp -o fusion_sdk/calvin_files/utils/src/StringUtils.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/calvin_files/utils/src/checksum.cpp -o fusion_sdk/calvin_files/utils/src/checksum.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/file/BPMAPFileData.cpp -o fusion_sdk/file/BPMAPFileData.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/file/BPMAPFileWriter.cpp -o fusion_sdk/file/BPMAPFileWriter.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/file/CDFFileData.cpp -o fusion_sdk/file/CDFFileData.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/file/CELFileData.cpp -o fusion_sdk/file/CELFileData.o fusion_sdk/file/CELFileData.cpp: In member function ‘float affxcel::CCELFileData::GetIntensity(int)’: fusion_sdk/file/CELFileData.cpp:2409:27: warning: taking address of packed member of ‘affxcel::_CELFileEntryType’ may result in an unaligned pointer value [-Waddress-of-packed-member] 2409 | fIntensity=MmGetFloat_I(&m_pEntries[index].Intensity); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ fusion_sdk/file/CELFileData.cpp:2414:27: warning: taking address of packed member of ‘affxcel::_CELFileEntryType’ may result in an unaligned pointer value [-Waddress-of-packed-member] 2414 | fIntensity=MmGetFloat_I(&(m_pEntries[index].Intensity)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fusion_sdk/file/CELFileData.cpp:2419:28: warning: taking address of packed member of ‘affxcel::_CELFileTranscriptomeEntryType’ may result in an unaligned pointer value [-Waddress-of-packed-member] 2419 | fIntensity=MmGetUInt16_N(&(m_pTransciptomeEntries[index].Intensity)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fusion_sdk/file/CELFileData.cpp: In member function ‘int affxcel::CCELFileData::GetIntensities(int, std::vector&)’: fusion_sdk/file/CELFileData.cpp:2445:37: warning: taking address of packed member of ‘affxcel::_CELFileEntryType’ may result in an unaligned pointer value [-Waddress-of-packed-member] 2445 | intensities[idx]=MmGetFloat_I(&m_pEntries[idx].Intensity); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ fusion_sdk/file/CELFileData.cpp:2451:37: warning: taking address of packed member of ‘affxcel::_CELFileEntryType’ may result in an unaligned pointer value [-Waddress-of-packed-member] 2451 | intensities[idx]=MmGetFloat_I(&m_pEntries[idx].Intensity); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ fusion_sdk/file/CELFileData.cpp:2457:38: warning: taking address of packed member of ‘affxcel::_CELFileTranscriptomeEntryType’ may result in an unaligned pointer value [-Waddress-of-packed-member] 2457 | intensities[idx]=MmGetUInt16_N(&m_pTransciptomeEntries[idx].Intensity); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fusion_sdk/file/CELFileData.cpp: In member function ‘float affxcel::CCELFileData::GetStdv(int)’: fusion_sdk/file/CELFileData.cpp:2506:23: warning: taking address of packed member of ‘affxcel::_CELFileEntryType’ may result in an unaligned pointer value [-Waddress-of-packed-member] 2506 | fStdev=MmGetFloat_I(&m_pEntries[index].Stdv); | ^~~~~~~~~~~~~~~~~~~~~~~ fusion_sdk/file/CELFileData.cpp:2509:23: warning: taking address of packed member of ‘affxcel::_CELFileEntryType’ may result in an unaligned pointer value [-Waddress-of-packed-member] 2509 | fStdev=MmGetFloat_I(&(m_pEntries[index].Stdv)); | ^~~~~~~~~~~~~~~~~~~~~~~~~ fusion_sdk/file/CELFileData.cpp:2512:24: warning: taking address of packed member of ‘affxcel::_CELFileTranscriptomeEntryType’ may result in an unaligned pointer value [-Waddress-of-packed-member] 2512 | fStdev=MmGetUInt16_N(&(m_pTransciptomeEntries[index].Stdv)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fusion_sdk/file/CELFileData.cpp: In member function ‘short int affxcel::CCELFileData::GetPixels(int)’: fusion_sdk/file/CELFileData.cpp:2551:24: warning: taking address of packed member of ‘affxcel::_CELFileEntryType’ may result in an unaligned pointer value [-Waddress-of-packed-member] 2551 | sPixels=MmGetInt16_I(&m_pEntries[index].Pixels); | ^~~~~~~~~~~~~~~~~~~~~~~~~ fusion_sdk/file/CELFileData.cpp:2554:24: warning: taking address of packed member of ‘affxcel::_CELFileEntryType’ may result in an unaligned pointer value [-Waddress-of-packed-member] 2554 | sPixels=MmGetInt16_I(&m_pEntries[index].Pixels); | ^~~~~~~~~~~~~~~~~~~~~~~~~ fusion_sdk/file/CELFileData.cpp: In member function ‘void affxcel::CCELFileData::SetIntensity(int, float)’: fusion_sdk/file/CELFileData.cpp:3194:16: warning: taking address of packed member of ‘affxcel::_CELFileEntryType’ may result in an unaligned pointer value [-Waddress-of-packed-member] 3194 | MmSetFloat_I(&m_pEntries[index].Intensity,intensity); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ fusion_sdk/file/CELFileData.cpp:3199:16: warning: taking address of packed member of ‘affxcel::_CELFileEntryType’ may result in an unaligned pointer value [-Waddress-of-packed-member] 3199 | MmSetFloat_I(&m_pEntries[index].Intensity,intensity); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ fusion_sdk/file/CELFileData.cpp:3204:17: warning: taking address of packed member of ‘affxcel::_CELFileTranscriptomeEntryType’ may result in an unaligned pointer value [-Waddress-of-packed-member] 3204 | MmSetUInt16_N(&m_pTransciptomeEntries[index].Intensity,s); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fusion_sdk/file/CELFileData.cpp: In member function ‘void affxcel::CCELFileData::SetStdv(int, float)’: fusion_sdk/file/CELFileData.cpp:3251:17: warning: taking address of packed member of ‘affxcel::_CELFileTranscriptomeEntryType’ may result in an unaligned pointer value [-Waddress-of-packed-member] 3251 | MmSetUInt16_N(&m_pTransciptomeEntries[index].Stdv,s); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fusion_sdk/file/CELFileData.cpp:3255:16: warning: taking address of packed member of ‘affxcel::_CELFileEntryType’ may result in an unaligned pointer value [-Waddress-of-packed-member] 3255 | MmSetFloat_I(&m_pEntries[index].Stdv,stdev); | ^~~~~~~~~~~~~~~~~~~~~~~ fusion_sdk/file/CELFileData.cpp: In member function ‘void affxcel::CCELFileData::SetPixels(int, short int)’: fusion_sdk/file/CELFileData.cpp:3294:28: warning: taking address of packed member of ‘affxcel::_CELFileEntryType’ may result in an unaligned pointer value [-Waddress-of-packed-member] 3294 | MmSetUInt16_I((uint16_t*)&m_pEntries[index].Pixels,(uint16_t)pixels); | ^~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ 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-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/file/FileIO.cpp -o fusion_sdk/file/FileIO.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/file/FileWriter.cpp -o fusion_sdk/file/FileWriter.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/file/TsvFile/ClfFile.cpp -o fusion_sdk/file/TsvFile/ClfFile.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/file/TsvFile/PgfFile.cpp -o fusion_sdk/file/TsvFile/PgfFile.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/file/TsvFile/TsvFile.cpp -o fusion_sdk/file/TsvFile/TsvFile.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/util/AffxByteArray.cpp -o fusion_sdk/util/AffxByteArray.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter 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-Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/util/Util.cpp -o fusion_sdk/util/Util.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/util/RowFile.cpp -o fusion_sdk/util/RowFile.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/util/TableFile.cpp -o fusion_sdk/util/TableFile.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c fusion_sdk/util/Convert.cpp -o fusion_sdk/util/Convert.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c R_affx_cel_parser.cpp -o R_affx_cel_parser.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c R_affx_cdf_parser.cpp -o R_affx_cdf_parser.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c R_affx_cdf_extras.cpp -o R_affx_cdf_extras.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c R_affx_bpmap_parser.cpp -o R_affx_bpmap_parser.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c R_affx_clf_pgf_parser.cpp -o R_affx_clf_pgf_parser.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -fpic -g -O2 -ffile-prefix-map=/build/r-base-SMLpBK/r-base-4.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wno-sign-compare -O0 -c R_affx_chp_parser.cpp -o R_affx_chp_parser.o g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o affxparser.so fusion_sdk/calvin_files/data/src/CDFData.o fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.o fusion_sdk/calvin_files/data/src/CDFProbeInformation.o fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.o fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.o fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.o fusion_sdk/calvin_files/data/src/CELData.o fusion_sdk/calvin_files/data/src/CHPBackgroundZone.o fusion_sdk/calvin_files/data/src/CHPData.o fusion_sdk/calvin_files/data/src/CHPExpressionEntry.o fusion_sdk/calvin_files/data/src/CHPMultiDataData.o fusion_sdk/calvin_files/data/src/CHPTilingData.o fusion_sdk/calvin_files/data/src/CHPQuantificationData.o fusion_sdk/calvin_files/data/src/CHPQuantificationDetectionData.o fusion_sdk/calvin_files/data/src/CHPGenotypeEntry.o fusion_sdk/calvin_files/data/src/CHPUniversalEntry.o fusion_sdk/calvin_files/data/src/ColumnInfo.o fusion_sdk/calvin_files/data/src/DataGroup.o fusion_sdk/calvin_files/data/src/DataGroupHeader.o fusion_sdk/calvin_files/data/src/DataSet.o fusion_sdk/calvin_files/data/src/DataSetHeader.o fusion_sdk/calvin_files/data/src/FileHeader.o fusion_sdk/calvin_files/data/src/GenericData.o fusion_sdk/calvin_files/data/src/GenericDataHeader.o fusion_sdk/calvin_files/exception/src/ExceptionBase.o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.o fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.o fusion_sdk/calvin_files/fusion/src/FusionCDFData.o fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.o fusion_sdk/calvin_files/fusion/src/FusionCELData.o fusion_sdk/calvin_files/fusion/src/FusionCHPData.o fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.o fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.o fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.o fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataData.o fusion_sdk/calvin_files/fusion/src/FusionCHPTilingData.o fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.o fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationData.o fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationDetectionData.o fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.o fusion_sdk/calvin_files/parsers/src/CDFFileReader.o fusion_sdk/calvin_files/parsers/src/CelFileReader.o fusion_sdk/calvin_files/parsers/src/CHPFileReader.o fusion_sdk/calvin_files/parsers/src/CHPMultiDataFileReader.o fusion_sdk/calvin_files/parsers/src/CHPTilingFileReader.o fusion_sdk/calvin_files/parsers/src/CHPQuantificationFileReader.o fusion_sdk/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.o fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.o fusion_sdk/calvin_files/parsers/src/DataGroupReader.o fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.o fusion_sdk/calvin_files/parsers/src/DataSetReader.o fusion_sdk/calvin_files/parsers/src/FileHeaderReader.o fusion_sdk/calvin_files/parsers/src/FileInput.o fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.o fusion_sdk/calvin_files/parsers/src/GenericFileReader.o fusion_sdk/calvin_files/utils/src/AffymetrixGuid.o fusion_sdk/calvin_files/utils/src/DateTime.o fusion_sdk/calvin_files/utils/src/FileUtils.o fusion_sdk/calvin_files/utils/src/StringUtils.o fusion_sdk/calvin_files/utils/src/checksum.o fusion_sdk/file/BPMAPFileData.o fusion_sdk/file/BPMAPFileWriter.o fusion_sdk/file/CDFFileData.o fusion_sdk/file/CELFileData.o fusion_sdk/file/CHPFileData.o fusion_sdk/file/FileIO.o fusion_sdk/file/FileWriter.o fusion_sdk/file/TsvFile/ClfFile.o fusion_sdk/file/TsvFile/PgfFile.o fusion_sdk/file/TsvFile/TsvFile.o fusion_sdk/util/AffxByteArray.o fusion_sdk/util/AffxConv.o fusion_sdk/util/MsgStream.o fusion_sdk/util/Util.o fusion_sdk/util/Err.o fusion_sdk/util/Fs.o fusion_sdk/util/Verbose.o fusion_sdk/util/RowFile.o fusion_sdk/util/TableFile.o fusion_sdk/util/Convert.o R_affx_cel_parser.o R_affx_cdf_parser.o R_affx_cdf_extras.o R_affx_bpmap_parser.o R_affx_clf_pgf_parser.o R_affx_chp_parser.o -L/usr/lib/R/lib -lR make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>/src' make[2]: Leaving directory '/<>/src' installing to /<>/debian/r-bioc-affxparser/usr/lib/R/site-library/00LOCK-r-bioc-affxparser-1.62.0/00new/affxparser/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (affxparser) Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 299. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 303. W: Ignoring specified R dependency: R (>= 2.14.0) I: Using r-cran-r.oo for Suggests:R.oo (>= 1.22.0) I: Using r-cran-r.utils for Suggests:R.utils (>= 2.7.0) W: Cannot find a debian package for Suggests:AffymetrixDataTestFiles I: BioConductor API version: r-api-bioc-3.12 I: Use r-bioc-affxparser as Debian binary package for variables substitution find debian -name Makefile| xargs -r chmod -x make[1]: Leaving directory '/<>' dh_installdocs -a -O--buildsystem=R dh_installchangelogs -a -O--buildsystem=R dh_installsystemduser -a -O--buildsystem=R dh_perl -a -O--buildsystem=R dh_link -a -O--buildsystem=R dh_strip_nondeterminism -a -O--buildsystem=R dh_compress -a -O--buildsystem=R dh_fixperms -a -O--buildsystem=R dh_missing -a -O--buildsystem=R dh_dwz -a -a -O--buildsystem=R dh_strip -a -a -O--buildsystem=R c5f473520bc0eb4a6bcb8c588dd740b278bafbc6 dh_makeshlibs -a -a -O--buildsystem=R dh_shlibdeps -a -a -O--buildsystem=R dh_installdeb -a -O--buildsystem=R dh_gencontrol -a -O--buildsystem=R dh_md5sums -a -O--buildsystem=R dh_builddeb -a -O--buildsystem=R INFO: pkgstriptranslations version 147 INFO: pkgstriptranslations version 147 pkgstriptranslations: processing r-bioc-affxparser (in debian/r-bioc-affxparser); do_strip: , oemstrip: pkgstriptranslations: processing r-bioc-affxparser-dbgsym (in debian/.debhelper/r-bioc-affxparser/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-bioc-affxparser/DEBIAN/control, package r-bioc-affxparser, directory debian/r-bioc-affxparser pkgstripfiles: processing control file: debian/.debhelper/r-bioc-affxparser/dbgsym-root/DEBIAN/control, package r-bioc-affxparser-dbgsym, directory debian/.debhelper/r-bioc-affxparser/dbgsym-root dpkg-deb: building package 'r-bioc-affxparser-dbgsym' in 'debian/.debhelper/scratch-space/build-r-bioc-affxparser/r-bioc-affxparser-dbgsym_1.62.0-2_arm64.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-bioc-affxparser ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-bioc-affxparser' in '../r-bioc-affxparser_1.62.0-2_arm64.deb'. Renaming r-bioc-affxparser-dbgsym_1.62.0-2_arm64.deb to r-bioc-affxparser-dbgsym_1.62.0-2_arm64.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../r-bioc-affxparser_1.62.0-2_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-04-30T17:30:12Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-bioc-affxparser_1.62.0-2_arm64.changes: ----------------------------------------- Format: 1.8 Date: Fri, 30 Apr 2021 14:58:40 +0530 Source: r-bioc-affxparser Binary: r-bioc-affxparser Built-For-Profiles: noudeb Architecture: arm64 Version: 1.62.0-2 Distribution: impish-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Nilesh Patra Description: r-bioc-affxparser - Affymetrix File Parsing SDK Changes: r-bioc-affxparser (1.62.0-2) unstable; urgency=medium . * Team upload. * Source-only upload. 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+------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: r-bioc-affxparser Binary: r-bioc-affxparser r-bioc-affxparser-dbgsym Architecture: arm64 Version: 1.62.0-2 Checksums-Md5: 953f7e139ead83caa32fb609ef7b2b87 2725224 r-bioc-affxparser-dbgsym_1.62.0-2_arm64.ddeb 2f98907b2011ff0bdc1d566f169c0754 976544 r-bioc-affxparser_1.62.0-2_arm64.deb Checksums-Sha1: cf0e863281848b70aebec41027064f0babbcc5bd 2725224 r-bioc-affxparser-dbgsym_1.62.0-2_arm64.ddeb 53652886a5de21ad4806036c85d9372f4f1977ba 976544 r-bioc-affxparser_1.62.0-2_arm64.deb Checksums-Sha256: e27c6a965b9feb135eb5429c1bb301ebfa678ad3037d36a3df869ed16706909c 2725224 r-bioc-affxparser-dbgsym_1.62.0-2_arm64.ddeb 60d2523cad5ea0a75f3784ebe32ab437ecfa0396a70847707a45edf0b6d662d3 976544 r-bioc-affxparser_1.62.0-2_arm64.deb Build-Origin: Ubuntu Build-Architecture: arm64 Build-Date: Fri, 30 Apr 2021 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zlib1g (= 1:1.2.11.dfsg-2ubuntu6), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu6) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1619774920" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-bioc-affxparser_1.62.0-2_arm64.deb ------------------------------------ new Debian package, version 2.0. size 976544 bytes: control archive=2892 bytes. 1084 bytes, 20 lines control 6585 bytes, 69 lines md5sums Package: r-bioc-affxparser Version: 1.62.0-2 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian R Packages Maintainers Installed-Size: 3504 Depends: r-base-core (>= 4.0.4-1build1), r-api-4.0, r-api-bioc-3.12, libc6 (>= 2.33), libgcc-s1 (>= 3.0), libstdc++6 (>= 9) Suggests: r-cran-r.oo (>= 1.22.0), r-cran-r.utils (>= 2.7.0) Section: gnu-r Priority: optional Homepage: https://bioconductor.org/packages/affxparser/ Description: Affymetrix File Parsing SDK Package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR). It provides methods for fast and memory efficient parsing of Affymetrix files using the Affymetrix' Fusion SDK. Both ASCII- and binary-based files are supported. Currently, there are methods for reading chip definition file (CDF) and a cell intensity file (CEL). These files can be read either in full or in part. For example, probe signals from a few probesets can be extracted very quickly from a set of CEL files into a convenient list structure. drwxr-xr-x root/root 0 2021-04-30 09:28 ./ drwxr-xr-x root/root 0 2021-04-30 09:28 ./usr/ drwxr-xr-x root/root 0 2021-04-30 09:28 ./usr/lib/ drwxr-xr-x root/root 0 2021-04-30 09:28 ./usr/lib/R/ drwxr-xr-x root/root 0 2021-04-30 09:28 ./usr/lib/R/site-library/ drwxr-xr-x root/root 0 2021-04-30 09:28 ./usr/lib/R/site-library/affxparser/ -rw-r--r-- root/root 1855 2021-04-30 09:28 ./usr/lib/R/site-library/affxparser/DESCRIPTION -rw-r--r-- root/root 2824 2021-04-30 09:28 ./usr/lib/R/site-library/affxparser/INDEX drwxr-xr-x root/root 0 2021-04-30 09:28 ./usr/lib/R/site-library/affxparser/Meta/ -rw-r--r-- root/root 2576 2021-04-30 09:28 ./usr/lib/R/site-library/affxparser/Meta/Rd.rds -rw-r--r-- root/root 122 2021-04-30 09:28 ./usr/lib/R/site-library/affxparser/Meta/features.rds -rw-r--r-- root/root 2523 2021-04-30 09:28 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09:28 ./usr/lib/R/site-library/affxparser/extras/ -rw-r--r-- root/root 25551 2021-04-30 09:28 ./usr/lib/R/site-library/affxparser/extras/easternEgg.gz drwxr-xr-x root/root 0 2021-04-30 09:28 ./usr/lib/R/site-library/affxparser/help/ -rw-r--r-- root/root 2102 2021-04-30 09:28 ./usr/lib/R/site-library/affxparser/help/AnIndex -rw-r--r-- root/root 200741 2021-04-30 09:28 ./usr/lib/R/site-library/affxparser/help/affxparser.rdb -rw-r--r-- root/root 1655 2021-04-30 09:28 ./usr/lib/R/site-library/affxparser/help/affxparser.rdx -rw-r--r-- root/root 769 2021-04-30 09:28 ./usr/lib/R/site-library/affxparser/help/aliases.rds -rw-r--r-- root/root 784 2021-04-30 09:28 ./usr/lib/R/site-library/affxparser/help/paths.rds drwxr-xr-x root/root 0 2021-04-30 09:28 ./usr/lib/R/site-library/affxparser/html/ -rw-r--r-- root/root 6368 2021-04-30 09:28 ./usr/lib/R/site-library/affxparser/html/00Index.html -rw-r--r-- root/root 1335 2021-04-30 09:28 ./usr/lib/R/site-library/affxparser/html/R.css drwxr-xr-x 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impish-proposed Host Architecture: arm64 Install-Time: 45 Job: r-bioc-affxparser_1.62.0-2.dsc Machine Architecture: arm64 Package: r-bioc-affxparser Package-Time: 278 Source-Version: 1.62.0-2 Space: n/a Status: successful Version: 1.62.0-2 -------------------------------------------------------------------------------- Finished at 2021-04-30T17:30:12Z Build needed 00:04:38, no disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=impish --arch=arm64 PACKAGEBUILD-21483443 Scanning for processes to kill in build PACKAGEBUILD-21483443