https://launchpad.net/ubuntu/+source/r-bioc-affy/1.64.0-1/+build/18079687 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-s390x-017 4.4.0-166-generic #195-Ubuntu SMP Tue Oct 1 09:34:26 UTC 2019 s390x Buildd toolchain package versions: launchpad-buildd_180 python-lpbuildd_180 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 10 Nov 05:10:27 ntpdate[1857]: adjust time server 10.211.37.1 offset -0.002461 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=s390x PACKAGEBUILD-18079687 --image-type chroot /home/buildd/filecache-default/1ac0229cc48d8f596a1790116aa52d00551197b1 Creating target for build PACKAGEBUILD-18079687 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=s390x PACKAGEBUILD-18079687 Starting target for build PACKAGEBUILD-18079687 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=s390x PACKAGEBUILD-18079687 'deb http://ftpmaster.internal/ubuntu focal main universe' 'deb http://ftpmaster.internal/ubuntu focal-security main universe' 'deb http://ftpmaster.internal/ubuntu focal-updates main universe' 'deb http://ftpmaster.internal/ubuntu focal-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-18079687 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=s390x PACKAGEBUILD-18079687 Updating target for build PACKAGEBUILD-18079687 Get:1 http://ftpmaster.internal/ubuntu focal InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu focal-security InRelease [79.7 kB] Get:3 http://ftpmaster.internal/ubuntu focal-updates InRelease [79.7 kB] Get:4 http://ftpmaster.internal/ubuntu focal-proposed InRelease [107 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main s390x Packages [924 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main Translation-en [506 kB] Get:7 http://ftpmaster.internal/ubuntu focal/universe s390x Packages [8398 kB] Get:8 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5190 kB] Get:9 http://ftpmaster.internal/ubuntu focal-proposed/main s390x Packages [62.5 kB] Get:10 http://ftpmaster.internal/ubuntu focal-proposed/main Translation-en [40.2 kB] Get:11 http://ftpmaster.internal/ubuntu focal-proposed/universe s390x Packages [304 kB] Get:12 http://ftpmaster.internal/ubuntu focal-proposed/universe Translation-en [215 kB] Fetched 16.2 MB in 13s (1241 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libhogweed4 libnettle6 libperl5.28 perl-modules-5.28 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libhogweed5 libnettle7 libperl5.30 perl-modules-5.30 The following packages will be upgraded: base-files binutils binutils-common binutils-s390x-linux-gnu bzip2 cpp-9 debianutils g++-9 gcc-9 gcc-9-base hostname libacl1 libapparmor1 libasan5 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libbz2-1.0 libcap-ng0 libcap2 libcc1-0 libcryptsetup12 libdebconfclient0 libgcc-9-dev libgcc1 libgcrypt20 libgnutls30 libgomp1 libitm1 libjson-c4 libkmod2 liblockfile-bin liblockfile1 liblz4-1 libncurses6 libncursesw6 libp11-kit0 libselinux1 libsemanage-common libsemanage1 libsqlite3-0 libstdc++-9-dev libstdc++6 libsystemd0 libtinfo6 libubsan1 libudev1 linux-libc-dev lsb-base ncurses-base ncurses-bin perl perl-base systemd systemd-sysv sysvinit-utils 58 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. Need to get 45.5 MB of archives. After this operation, 49.6 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu focal/main s390x base-files s390x 11ubuntu1 [60.3 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main s390x debianutils s390x 4.9 [85.8 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main s390x hostname s390x 3.23 [11.1 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main s390x ncurses-bin s390x 6.1+20191019-1ubuntu1 [169 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main s390x perl-modules-5.30 all 5.30.0-9 [2739 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main s390x libperl5.30 s390x 5.30.0-9 [3782 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main s390x perl s390x 5.30.0-9 [224 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main s390x perl-base s390x 5.30.0-9 [1423 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main s390x bzip2 s390x 1.0.8-2 [33.3 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main s390x libbz2-1.0 s390x 1.0.8-2 [32.6 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main s390x ncurses-base all 6.1+20191019-1ubuntu1 [17.9 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main s390x lsb-base all 11.1.0ubuntu1 [12.2 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main s390x sysvinit-utils s390x 2.96-1ubuntu1 [20.6 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main s390x systemd-sysv s390x 243-3ubuntu1 [9364 B] Get:15 http://ftpmaster.internal/ubuntu focal/main s390x libacl1 s390x 2.2.53-5 [18.3 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main s390x libapparmor1 s390x 2.13.3-5ubuntu5 [33.2 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main s390x libaudit-common all 1:2.8.5-2ubuntu2 [4080 B] Get:18 http://ftpmaster.internal/ubuntu focal/main s390x libcap-ng0 s390x 0.7.9-2.1 [10.8 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main s390x libaudit1 s390x 1:2.8.5-2ubuntu2 [36.9 kB] Get:20 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libcap2 s390x 1:2.27-1 [14.2 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main s390x libjson-c4 s390x 0.13.1+dfsg-6 [27.9 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main s390x libcryptsetup12 s390x 2:2.2.1-1ubuntu1 [159 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main s390x libnettle7 s390x 3.5.1+really3.5.1-2 [124 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main s390x libhogweed5 s390x 3.5.1+really3.5.1-2 [136 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main s390x libp11-kit0 s390x 0.23.18.1-2 [172 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main s390x libgnutls30 s390x 3.6.9-5ubuntu2 [684 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main s390x libkmod2 s390x 26-3ubuntu1 [40.0 kB] Get:28 http://ftpmaster.internal/ubuntu focal-proposed/main s390x liblz4-1 s390x 1.9.2-1 [53.9 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main s390x systemd s390x 243-3ubuntu1 [3284 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main s390x libsystemd0 s390x 243-3ubuntu1 [242 kB] Get:31 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libcc1-0 s390x 9.2.1-19ubuntu1 [46.4 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main s390x binutils-s390x-linux-gnu s390x 2.33.1-1ubuntu1 [1460 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main s390x libbinutils s390x 2.33.1-1ubuntu1 [299 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main s390x binutils-common s390x 2.33.1-1ubuntu1 [203 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main s390x binutils s390x 2.33.1-1ubuntu1 [3336 B] Get:36 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libgomp1 s390x 9.2.1-19ubuntu1 [83.3 kB] Get:37 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libitm1 s390x 9.2.1-19ubuntu1 [27.2 kB] Get:38 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libatomic1 s390x 9.2.1-19ubuntu1 [8268 B] Get:39 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libasan5 s390x 9.2.1-19ubuntu1 [361 kB] Get:40 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libubsan1 s390x 9.2.1-19ubuntu1 [125 kB] Get:41 http://ftpmaster.internal/ubuntu focal-proposed/main s390x gcc-9-base s390x 9.2.1-19ubuntu1 [19.2 kB] Get:42 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libstdc++6 s390x 9.2.1-19ubuntu1 [503 kB] Get:43 http://ftpmaster.internal/ubuntu focal-proposed/main s390x g++-9 s390x 9.2.1-19ubuntu1 [8460 kB] Get:44 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libstdc++-9-dev s390x 9.2.1-19ubuntu1 [1673 kB] Get:45 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libgcc-9-dev s390x 9.2.1-19ubuntu1 [705 kB] Get:46 http://ftpmaster.internal/ubuntu focal-proposed/main s390x gcc-9 s390x 9.2.1-19ubuntu1 [8043 kB] Get:47 http://ftpmaster.internal/ubuntu focal-proposed/main s390x cpp-9 s390x 9.2.1-19ubuntu1 [7267 kB] Get:48 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libgcc1 s390x 1:9.2.1-19ubuntu1 [25.3 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main s390x libattr1 s390x 1:2.4.48-5 [12.4 kB] Get:50 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libdebconfclient0 s390x 0.250ubuntu1 [6208 B] Get:51 http://ftpmaster.internal/ubuntu focal/main s390x libgcrypt20 s390x 1.8.5-3ubuntu1 [349 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main s390x libncurses6 s390x 6.1+20191019-1ubuntu1 [94.7 kB] Get:53 http://ftpmaster.internal/ubuntu focal/main s390x libtinfo6 s390x 6.1+20191019-1ubuntu1 [83.6 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main s390x libncursesw6 s390x 6.1+20191019-1ubuntu1 [122 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main s390x libselinux1 s390x 2.9-2build1 [64.7 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main s390x libsemanage-common all 2.9-3build1 [9736 B] Get:57 http://ftpmaster.internal/ubuntu focal/main s390x libsemanage1 s390x 2.9-3build1 [78.4 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main s390x libudev1 s390x 243-3ubuntu1 [74.1 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main s390x libsqlite3-0 s390x 3.30.1-1 [504 kB] Get:60 http://ftpmaster.internal/ubuntu focal/main s390x liblockfile-bin s390x 1.16-1.1 [11.4 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main s390x liblockfile1 s390x 1.16-1.1 [6476 B] Get:62 http://ftpmaster.internal/ubuntu focal-proposed/main s390x linux-libc-dev s390x 5.3.0-21.22 [1082 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 45.5 MB in 7s (6196 kB/s) (Reading database ... 12530 files and directories currently installed.) Preparing to unpack .../base-files_11ubuntu1_s390x.deb ... Unpacking base-files (11ubuntu1) over (10.2ubuntu7) ... Setting up base-files (11ubuntu1) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Updating /root/.profile to current default. (Reading database ... 12530 files and directories currently installed.) Preparing to unpack .../debianutils_4.9_s390x.deb ... Unpacking debianutils (4.9) over (4.8.6.3) ... Setting up debianutils (4.9) ... (Reading database ... 12530 files and directories currently installed.) Preparing to unpack .../hostname_3.23_s390x.deb ... Unpacking hostname (3.23) over (3.22) ... Setting up hostname (3.23) ... (Reading database ... 12530 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.1+20191019-1ubuntu1_s390x.deb ... 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Installing new version of config file /etc/dhcp/dhclient-enter-hooks.d/resolved ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from random generator. Setting up g++-9 (9.2.1-19ubuntu1) ... Setting up systemd-sysv (243-3ubuntu1) ... Processing triggers for libc-bin (2.30-0ubuntu2) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-18079687 s390x focal-proposed -c chroot:build-PACKAGEBUILD-18079687 --arch=s390x --dist=focal-proposed --nolog r-bioc-affy_1.64.0-1.dsc Initiating build PACKAGEBUILD-18079687 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-166-generic #195-Ubuntu SMP Tue Oct 1 09:34:26 UTC 2019 s390x sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-s390x-017.buildd +==============================================================================+ | r-bioc-affy 1.64.0-1 (s390x) 10 Nov 2019 05:10 | +==============================================================================+ Package: r-bioc-affy Version: 1.64.0-1 Source Version: 1.64.0-1 Distribution: focal-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x I: NOTICE: Log filtering will replace 'build/r-bioc-affy-uayF_K/r-bioc-affy-1.64.0' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-affy-uayF_K' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-18079687/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-bioc-affy_1.64.0-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-HhETZk/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-HhETZk/apt_archive ./ InRelease Get:2 copy:/<>/resolver-HhETZk/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-HhETZk/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-HhETZk/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-HhETZk/apt_archive ./ Packages [528 B] Fetched 2861 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libhogweed4 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-HhETZk/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14460 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper-compat (= 12), dh-r, r-base-dev, r-bioc-biocgenerics, r-bioc-biobase, r-bioc-affyio, r-cran-biocmanager, r-bioc-preprocesscore, r-bioc-zlibbioc Filtered Build-Depends: debhelper-compat (= 12), dh-r, r-base-dev, r-bioc-biocgenerics, r-bioc-biobase, r-bioc-affyio, r-cran-biocmanager, r-bioc-preprocesscore, r-bioc-zlibbioc dpkg-deb: building package 'sbuild-build-depends-r-bioc-affy-dummy' in '/<>/resolver-EMaGVG/apt_archive/sbuild-build-depends-r-bioc-affy-dummy.deb'. Ign:1 copy:/<>/resolver-EMaGVG/apt_archive ./ InRelease Get:2 copy:/<>/resolver-EMaGVG/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-EMaGVG/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-EMaGVG/apt_archive ./ Sources [274 B] Get:5 copy:/<>/resolver-EMaGVG/apt_archive ./ Packages [595 B] Fetched 2988 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install r-bioc-affy build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libhogweed4 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-9 groff-base icu-devtools intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-9-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu-dev libicu63 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libncurses-dev libncurses5-dev libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix0 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db pkg-config po-debconf r-base-core r-base-dev r-bioc-affyio r-bioc-biobase r-bioc-biocgenerics r-bioc-preprocesscore r-bioc-zlibbioc r-cran-biocmanager ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-9-multilib gfortran-9-doc libgfortran5-dbg libcoarrays-dev groff liblapack-doc krb5-doc krb5-user icu-doc liblzma-doc ncurses-doc readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk m4-doc apparmor less www-browser libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo r-bioc-s4vectors r-bioc-iranges r-bioc-genomicranges r-bioc-delayedarray r-bioc-biostrings r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-remotes r-cran-withr r-cran-curl r-cran-knitr Recommended packages: devscripts curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libpng-tools publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl r-recommended r-doc-html r-cran-runit r-cran-testthat libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-9 groff-base icu-devtools intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-9-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu-dev libicu63 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libncurses-dev libncurses5-dev libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix0 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db pkg-config po-debconf r-base-core r-base-dev r-bioc-affyio r-bioc-biobase r-bioc-biocgenerics r-bioc-preprocesscore r-bioc-zlibbioc r-cran-biocmanager sbuild-build-depends-r-bioc-affy-dummy ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 145 newly installed, 0 to remove and 0 not upgraded. Need to get 78.4 MB of archives. After this operation, 259 MB of additional disk space will be used. Get:1 copy:/<>/resolver-EMaGVG/apt_archive ./ sbuild-build-depends-r-bioc-affy-dummy 0.invalid.0 [924 B] Get:2 http://ftpmaster.internal/ubuntu focal/main s390x libbsd0 s390x 0.10.0-1 [43.7 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main s390x bsdmainutils s390x 11.1.2ubuntu2 [181 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main s390x libuchardet0 s390x 0.0.6-3 [64.5 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main s390x groff-base s390x 1.22.4-3 [819 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main s390x libpipeline1 s390x 1.5.1-2 [24.5 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main s390x man-db s390x 2.9.0-1 [1103 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main s390x libmagic-mgc s390x 1:5.37-6 [210 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main s390x libmagic1 s390x 1:5.37-6 [72.3 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main s390x file s390x 1:5.37-6 [23.0 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main s390x libelf1 s390x 0.176-1.1 [41.4 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main s390x libexpat1 s390x 2.2.9-1 [69.8 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main s390x libfribidi0 s390x 1.0.7-1 [24.4 kB] Get:14 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libglib2.0-0 s390x 2.63.1-1 [1169 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main s390x libicu63 s390x 63.2-2 [8044 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main s390x libxml2 s390x 2.9.4+dfsg1-7ubuntu5 [664 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main s390x ucf all 3.0038+nmu1 [51.6 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main s390x gettext-base s390x 0.19.8.1-9 [48.1 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main s390x libkrb5support0 s390x 1.17-6 [30.4 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main s390x libk5crypto3 s390x 1.17-6 [77.9 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main s390x libkeyutils1 s390x 1.6-6ubuntu1 [9848 B] Get:22 http://ftpmaster.internal/ubuntu focal/main s390x libkrb5-3 s390x 1.17-6 [308 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main s390x libgssapi-krb5-2 s390x 1.17-6 [110 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main s390x libpsl5 s390x 0.20.2-2 [49.8 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main s390x libxau6 s390x 1:1.0.9-0ubuntu1 [7212 B] Get:26 http://ftpmaster.internal/ubuntu focal/main s390x libxdmcp6 s390x 1:1.1.3-0ubuntu1 [10.4 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main s390x libxcb1 s390x 1.13.1-2 [43.0 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main s390x libx11-data all 2:1.6.8-1 [113 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main s390x libx11-6 s390x 2:1.6.8-1 [542 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main s390x libxext6 s390x 2:1.3.4-0ubuntu1 [27.0 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main s390x libxmuu1 s390x 2:1.1.3-0ubuntu1 [9568 B] Get:32 http://ftpmaster.internal/ubuntu focal/main s390x xauth s390x 1:1.1-0ubuntu1 [23.6 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main s390x libsigsegv2 s390x 2.12-2 [13.8 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main s390x m4 s390x 1.4.18-4 [196 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main s390x autoconf all 2.69-11ubuntu1 [321 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main s390x autotools-dev all 20180224.1 [39.6 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main s390x automake all 1:1.16.1-4ubuntu3 [522 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main s390x autopoint all 0.19.8.1-9 [412 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main s390x dctrl-tools s390x 2.24-3 [58.7 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main s390x libtool all 2.4.6-11 [194 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main s390x dh-autoreconf all 19 [16.1 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main s390x libdebhelper-perl all 12.7.1ubuntu1 [52.0 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main s390x libarchive-zip-perl all 1.67-1 [90.4 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main s390x libsub-override-perl all 0.09-2 [9532 B] Get:45 http://ftpmaster.internal/ubuntu focal/main s390x libfile-stripnondeterminism-perl all 1.6.2-1 [16.1 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main s390x dh-strip-nondeterminism all 1.6.2-1 [5228 B] Get:47 http://ftpmaster.internal/ubuntu focal/main s390x dwz s390x 0.13-2 [140 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main s390x libcroco3 s390x 0.6.13-1 [73.7 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main s390x gettext s390x 0.19.8.1-9 [858 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main s390x intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main s390x po-debconf all 1.0.21 [233 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main s390x debhelper all 12.7.1ubuntu1 [875 kB] Get:53 http://ftpmaster.internal/ubuntu focal/main s390x zip s390x 3.0-11build1 [157 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main s390x unzip s390x 6.0-25ubuntu1 [157 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main s390x libpaper1 s390x 1.1.28 [12.7 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main s390x libpaper-utils s390x 1.1.28 [8184 B] Get:57 http://ftpmaster.internal/ubuntu focal/main s390x xdg-utils all 1.1.3-1ubuntu2 [60.5 kB] Get:58 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libblas3 s390x 3.8.0-8 [123 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main s390x libfreetype6 s390x 2.10.1-2 [319 kB] Get:60 http://ftpmaster.internal/ubuntu focal/main s390x fonts-dejavu-core all 2.37-1 [1041 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main s390x fontconfig-config all 2.13.1-2ubuntu2 [28.9 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main s390x libfontconfig1 s390x 2.13.1-2ubuntu2 [108 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main s390x libpixman-1-0 s390x 0.38.4-0ubuntu1 [136 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main s390x libxcb-render0 s390x 1.13.1-2 [14.6 kB] Get:65 http://ftpmaster.internal/ubuntu focal/main s390x libxcb-shm0 s390x 1.13.1-2 [5472 B] Get:66 http://ftpmaster.internal/ubuntu focal/main s390x libxrender1 s390x 1:0.9.10-1 [17.8 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main s390x libcairo2 s390x 1.16.0-4 [536 kB] Get:68 http://ftpmaster.internal/ubuntu focal/main s390x libroken18-heimdal s390x 7.5.0+dfsg-3build1 [39.4 kB] Get:69 http://ftpmaster.internal/ubuntu focal/main s390x libasn1-8-heimdal s390x 7.5.0+dfsg-3build1 [148 kB] Get:70 http://ftpmaster.internal/ubuntu focal/main s390x libheimbase1-heimdal s390x 7.5.0+dfsg-3build1 [27.4 kB] Get:71 http://ftpmaster.internal/ubuntu focal/main s390x libhcrypto4-heimdal s390x 7.5.0+dfsg-3build1 [82.4 kB] Get:72 http://ftpmaster.internal/ubuntu focal/main s390x libwind0-heimdal s390x 7.5.0+dfsg-3build1 [47.7 kB] Get:73 http://ftpmaster.internal/ubuntu focal/main s390x libhx509-5-heimdal s390x 7.5.0+dfsg-3build1 [97.6 kB] Get:74 http://ftpmaster.internal/ubuntu focal/main s390x libkrb5-26-heimdal s390x 7.5.0+dfsg-3build1 [189 kB] Get:75 http://ftpmaster.internal/ubuntu focal/main s390x libheimntlm0-heimdal s390x 7.5.0+dfsg-3build1 [14.1 kB] Get:76 http://ftpmaster.internal/ubuntu focal/main s390x libgssapi3-heimdal s390x 7.5.0+dfsg-3build1 [86.5 kB] Get:77 http://ftpmaster.internal/ubuntu focal/main s390x libsasl2-modules-db s390x 2.1.27+dfsg-1build3 [13.7 kB] Get:78 http://ftpmaster.internal/ubuntu focal/main s390x libsasl2-2 s390x 2.1.27+dfsg-1build3 [46.3 kB] Get:79 http://ftpmaster.internal/ubuntu focal/main s390x libldap-common all 2.4.48+dfsg-1ubuntu3 [17.3 kB] Get:80 http://ftpmaster.internal/ubuntu focal/main s390x libldap-2.4-2 s390x 2.4.48+dfsg-1ubuntu3 [145 kB] Get:81 http://ftpmaster.internal/ubuntu focal/main s390x libnghttp2-14 s390x 1.39.2-1 [74.7 kB] Get:82 http://ftpmaster.internal/ubuntu focal/main s390x librtmp1 s390x 2.4+20151223.gitfa8646d.1-2build1 [50.9 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main s390x libssh-4 s390x 0.9.0-1ubuntu1 [180 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main s390x libcurl4 s390x 7.65.3-1ubuntu4 [216 kB] Get:85 http://ftpmaster.internal/ubuntu focal/main s390x libjpeg-turbo8 s390x 2.0.3-0ubuntu1 [102 kB] Get:86 http://ftpmaster.internal/ubuntu focal/main s390x libjpeg8 s390x 8c-2ubuntu8 [2142 B] Get:87 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libgfortran5 s390x 9.2.1-19ubuntu1 [360 kB] Get:88 http://ftpmaster.internal/ubuntu focal-proposed/main s390x liblapack3 s390x 3.8.0-8 [1682 kB] Get:89 http://ftpmaster.internal/ubuntu focal/main s390x fontconfig s390x 2.13.1-2ubuntu2 [171 kB] Get:90 http://ftpmaster.internal/ubuntu focal/main s390x libgraphite2-3 s390x 1.3.13-11 [67.9 kB] Get:91 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libharfbuzz0b s390x 2.6.4-1 [371 kB] Get:92 http://ftpmaster.internal/ubuntu focal/main s390x libthai-data all 0.1.28-3 [134 kB] Get:93 http://ftpmaster.internal/ubuntu focal/main s390x libdatrie1 s390x 0.2.12-3 [18.1 kB] Get:94 http://ftpmaster.internal/ubuntu focal/main s390x libthai0 s390x 0.1.28-3 [18.1 kB] Get:95 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libpango-1.0-0 s390x 1.44.7-1 [156 kB] Get:96 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libpangoft2-1.0-0 s390x 1.44.7-1 [32.3 kB] Get:97 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libpangocairo-1.0-0 s390x 1.44.7-1 [22.5 kB] Get:98 http://ftpmaster.internal/ubuntu focal/main s390x libtcl8.6 s390x 8.6.9+dfsg-2 [829 kB] Get:99 http://ftpmaster.internal/ubuntu focal/main s390x libjbig0 s390x 2.1-3.1build1 [26.3 kB] Get:100 http://ftpmaster.internal/ubuntu focal/main s390x libwebp6 s390x 0.6.1-2 [149 kB] Get:101 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libtiff5 s390x 4.1.0-1 [151 kB] Get:102 http://ftpmaster.internal/ubuntu focal/main s390x libxft2 s390x 2.3.3-0ubuntu1 [36.8 kB] Get:103 http://ftpmaster.internal/ubuntu focal/main s390x x11-common all 1:7.7+19ubuntu12 [22.4 kB] Get:104 http://ftpmaster.internal/ubuntu focal/main s390x libxss1 s390x 1:1.2.3-1 [7972 B] Get:105 http://ftpmaster.internal/ubuntu focal/main s390x libtk8.6 s390x 8.6.9-2 [660 kB] Get:106 http://ftpmaster.internal/ubuntu focal/main s390x libice6 s390x 2:1.0.10-0ubuntu1 [36.8 kB] Get:107 http://ftpmaster.internal/ubuntu focal/main s390x libsm6 s390x 2:1.2.3-1 [15.2 kB] Get:108 http://ftpmaster.internal/ubuntu focal/main s390x libxt6 s390x 1:1.1.5-1 [147 kB] Get:109 http://ftpmaster.internal/ubuntu focal/universe s390x r-base-core s390x 3.6.1-7 [24.3 MB] Get:110 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libgfortran-9-dev s390x 9.2.1-19ubuntu1 [413 kB] Get:111 http://ftpmaster.internal/ubuntu focal-proposed/main s390x gfortran-9 s390x 9.2.1-19ubuntu1 [8010 kB] Get:112 http://ftpmaster.internal/ubuntu focal/main s390x gfortran s390x 4:9.2.1-3.1ubuntu1 [1376 B] Get:113 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libblas-dev s390x 3.8.0-8 [127 kB] Get:114 http://ftpmaster.internal/ubuntu focal-proposed/main s390x liblapack-dev s390x 3.8.0-8 [3284 kB] Get:115 http://ftpmaster.internal/ubuntu focal/main s390x libncurses-dev s390x 6.1+20191019-1ubuntu1 [318 kB] Get:116 http://ftpmaster.internal/ubuntu focal/main s390x libncurses5-dev s390x 6.1+20191019-1ubuntu1 [992 B] Get:117 http://ftpmaster.internal/ubuntu focal/main s390x libreadline-dev s390x 8.0-3 [136 kB] Get:118 http://ftpmaster.internal/ubuntu focal/main s390x libjpeg-turbo8-dev s390x 2.0.3-0ubuntu1 [214 kB] Get:119 http://ftpmaster.internal/ubuntu focal/main s390x libjpeg8-dev s390x 8c-2ubuntu8 [1612 B] Get:120 http://ftpmaster.internal/ubuntu focal/main s390x libjpeg-dev s390x 8c-2ubuntu8 [1612 B] Get:121 http://ftpmaster.internal/ubuntu focal/main s390x libpcre2-16-0 s390x 10.32-5 [96.1 kB] Get:122 http://ftpmaster.internal/ubuntu focal/main s390x libpcre2-32-0 s390x 10.32-5 [90.2 kB] Get:123 http://ftpmaster.internal/ubuntu focal/main s390x libpcre2-posix0 s390x 10.32-5 [5596 B] Get:124 http://ftpmaster.internal/ubuntu focal/main s390x libpcre2-dev s390x 10.32-5 [454 kB] Get:125 http://ftpmaster.internal/ubuntu focal/main s390x libpcre16-3 s390x 2:8.39-12 [79.0 kB] Get:126 http://ftpmaster.internal/ubuntu focal/main s390x libpcre32-3 s390x 2:8.39-12 [73.8 kB] Get:127 http://ftpmaster.internal/ubuntu focal/main s390x libpcrecpp0v5 s390x 2:8.39-12 [14.6 kB] Get:128 http://ftpmaster.internal/ubuntu focal/main s390x libpcre3-dev s390x 2:8.39-12 [373 kB] Get:129 http://ftpmaster.internal/ubuntu focal/main s390x zlib1g-dev s390x 1:1.2.11.dfsg-1ubuntu3 [173 kB] Get:130 http://ftpmaster.internal/ubuntu focal/main s390x libpng-dev s390x 1.6.37-1 [171 kB] Get:131 http://ftpmaster.internal/ubuntu focal/main s390x libbz2-dev s390x 1.0.8-2 [30.6 kB] Get:132 http://ftpmaster.internal/ubuntu focal/main s390x liblzma-dev s390x 5.2.4-1 [145 kB] Get:133 http://ftpmaster.internal/ubuntu focal/main s390x icu-devtools s390x 63.2-2 [169 kB] Get:134 http://ftpmaster.internal/ubuntu focal/main s390x libicu-dev s390x 63.2-2 [8890 kB] Get:135 http://ftpmaster.internal/ubuntu focal/main s390x pkg-config s390x 0.29.1-0ubuntu3 [43.7 kB] Get:136 http://ftpmaster.internal/ubuntu focal/universe s390x r-base-dev all 3.6.1-7 [4528 B] Get:137 http://ftpmaster.internal/ubuntu focal/main s390x libfile-which-perl all 1.23-1 [13.8 kB] Get:138 http://ftpmaster.internal/ubuntu focal/universe s390x libswitch-perl all 2.17-2 [18.8 kB] Get:139 http://ftpmaster.internal/ubuntu focal/universe s390x dh-r all 20190917 [32.7 kB] Get:140 http://ftpmaster.internal/ubuntu focal-proposed/universe s390x r-bioc-biocgenerics all 0.32.0-1 [639 kB] Get:141 http://ftpmaster.internal/ubuntu focal-proposed/universe s390x r-bioc-zlibbioc all 1.32.0+dfsg-1 [8820 B] Get:142 http://ftpmaster.internal/ubuntu focal-proposed/universe s390x r-bioc-affyio s390x 1.56.0-1 [76.5 kB] Get:143 http://ftpmaster.internal/ubuntu focal-proposed/universe s390x r-bioc-biobase s390x 2.46.0-1 [2223 kB] Get:144 http://ftpmaster.internal/ubuntu focal-proposed/universe s390x r-bioc-preprocesscore s390x 1.48.0-1 [140 kB] Get:145 http://ftpmaster.internal/ubuntu focal/universe s390x r-cran-biocmanager all 1.30.9+dfsg-1 [94.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 78.4 MB in 26s (3066 kB/s) Selecting previously unselected package libbsd0:s390x. (Reading database ... 14460 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.10.0-1_s390x.deb ... Unpacking libbsd0:s390x (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2ubuntu2_s390x.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package libuchardet0:s390x. Preparing to unpack .../002-libuchardet0_0.0.6-3_s390x.deb ... Unpacking libuchardet0:s390x (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-3_s390x.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:s390x. Preparing to unpack .../004-libpipeline1_1.5.1-2_s390x.deb ... Unpacking libpipeline1:s390x (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.9.0-1_s390x.deb ... Unpacking man-db (2.9.0-1) ... 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Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package dctrl-tools. Preparing to unpack .../037-dctrl-tools_2.24-3_s390x.deb ... Unpacking dctrl-tools (2.24-3) ... Selecting previously unselected package libtool. Preparing to unpack .../038-libtool_2.4.6-11_all.deb ... Unpacking libtool (2.4.6-11) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../039-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../040-libdebhelper-perl_12.7.1ubuntu1_all.deb ... Unpacking libdebhelper-perl (12.7.1ubuntu1) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../041-libarchive-zip-perl_1.67-1_all.deb ... Unpacking libarchive-zip-perl (1.67-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../042-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../043-libfile-stripnondeterminism-perl_1.6.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.6.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../044-dh-strip-nondeterminism_1.6.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.6.2-1) ... Selecting previously unselected package dwz. Preparing to unpack .../045-dwz_0.13-2_s390x.deb ... Unpacking dwz (0.13-2) ... Selecting previously unselected package libcroco3:s390x. Preparing to unpack .../046-libcroco3_0.6.13-1_s390x.deb ... Unpacking libcroco3:s390x (0.6.13-1) ... Selecting previously unselected package gettext. Preparing to unpack .../047-gettext_0.19.8.1-9_s390x.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../048-intltool-debian_0.35.0+20060710.5_all.deb ... 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Unpacking sbuild-build-depends-r-bioc-affy-dummy (0.invalid.0) ... Setting up libexpat1:s390x (2.2.9-1) ... Setting up libpcrecpp0v5:s390x (2:8.39-12) ... Setting up libpipeline1:s390x (1.5.1-2) ... Setting up libgraphite2-3:s390x (1.3.13-11) ... Setting up libpixman-1-0:s390x (0.38.4-0ubuntu1) ... Setting up libfile-which-perl (1.23-1) ... Setting up libxau6:s390x (1:1.0.9-0ubuntu1) ... Setting up libkeyutils1:s390x (1.6-6ubuntu1) ... Setting up libncurses-dev:s390x (6.1+20191019-1ubuntu1) ... Setting up libpsl5:s390x (0.20.2-2) ... Setting up libpcre16-3:s390x (2:8.39-12) ... Setting up libdatrie1:s390x (0.2.12-3) ... Setting up libmagic-mgc (1:5.37-6) ... Setting up libarchive-zip-perl (1.67-1) ... Setting up libglib2.0-0:s390x (2.63.1-1) ... No schema files found: doing nothing. Setting up unzip (6.0-25ubuntu1) ... Setting up libdebhelper-perl (12.7.1ubuntu1) ... Setting up x11-common (1:7.7+19ubuntu12) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libnghttp2-14:s390x (1.39.2-1) ... Setting up libmagic1:s390x (1:5.37-6) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.37-6) ... Setting up libreadline-dev:s390x (8.0-3) ... Setting up libldap-common (2.4.48+dfsg-1ubuntu3) ... Setting up libjbig0:s390x (2.1-3.1build1) ... Setting up libpcre2-16-0:s390x (10.32-5) ... Setting up libicu63:s390x (63.2-2) ... Setting up libkrb5support0:s390x (1.17-6) ... Setting up libsasl2-modules-db:s390x (2.1.27+dfsg-1build3) ... Setting up zip (3.0-11build1) ... Setting up autotools-dev (20180224.1) ... Setting up libpcre2-32-0:s390x (10.32-5) ... Setting up libblas3:s390x (3.8.0-8) ... update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode Setting up libpcre2-posix0:s390x (10.32-5) ... Setting up libswitch-perl (2.17-2) ... Setting up libfreetype6:s390x (2.10.1-2) ... Setting up libx11-data (2:1.6.8-1) ... Setting up librtmp1:s390x (2.4+20151223.gitfa8646d.1-2build1) ... Setting up libsigsegv2:s390x (2.12-2) ... Setting up libfribidi0:s390x (1.0.7-1) ... Setting up libpcre32-3:s390x (2:8.39-12) ... Setting up libtcl8.6:s390x (8.6.9+dfsg-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libwebp6:s390x (0.6.1-2) ... Setting up icu-devtools (63.2-2) ... Setting up pkg-config (0.29.1-0ubuntu3) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up ucf (3.0038+nmu1) ... Setting up libk5crypto3:s390x (1.17-6) ... Setting up libjpeg-turbo8:s390x (2.0.3-0ubuntu1) ... Setting up libsasl2-2:s390x (2.1.27+dfsg-1build3) ... Setting up libgfortran5:s390x (9.2.1-19ubuntu1) ... Setting up libroken18-heimdal:s390x (7.5.0+dfsg-3build1) ... Setting up liblzma-dev:s390x (5.2.4-1) ... Setting up zlib1g-dev:s390x (1:1.2.11.dfsg-1ubuntu3) ... Setting up libuchardet0:s390x (0.0.6-3) ... Setting up libncurses5-dev:s390x (6.1+20191019-1ubuntu1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libharfbuzz0b:s390x (2.6.4-1) ... Setting up libthai-data (0.1.28-3) ... Setting up libkrb5-3:s390x (1.17-6) ... Setting up libbsd0:s390x (0.10.0-1) ... Setting up libelf1:s390x (0.176-1.1) ... Setting up libicu-dev:s390x (63.2-2) ... Setting up libxml2:s390x (2.9.4+dfsg1-7ubuntu5) ... Setting up xdg-utils (1.1.3-1ubuntu2) ... Setting up libblas-dev:s390x (3.8.0-8) ... update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode Setting up dctrl-tools (2.24-3) ... Setting up libheimbase1-heimdal:s390x (7.5.0+dfsg-3build1) ... Setting up libbz2-dev:s390x (1.0.8-2) ... Setting up libjpeg8:s390x (8c-2ubuntu8) ... Setting up libfile-stripnondeterminism-perl (1.6.2-1) ... Setting up libpaper1:s390x (1.1.28) ... Creating config file /etc/papersize with new version Setting up libice6:s390x (2:1.0.10-0ubuntu1) ... Setting up libjpeg-turbo8-dev:s390x (2.0.3-0ubuntu1) ... Setting up libxdmcp6:s390x (1:1.1.3-0ubuntu1) ... Setting up liblapack3:s390x (3.8.0-8) ... update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode Setting up libxcb1:s390x (1.13.1-2) ... Setting up libpcre2-dev:s390x (10.32-5) ... Setting up libtool (2.4.6-11) ... Setting up libxcb-render0:s390x (1.13.1-2) ... Setting up libpcre3-dev:s390x (2:8.39-12) ... Setting up fontconfig-config (2.13.1-2ubuntu2) ... Setting up libasn1-8-heimdal:s390x (7.5.0+dfsg-3build1) ... Setting up libpng-dev:s390x (1.6.37-1) ... Setting up libgfortran-9-dev:s390x (9.2.1-19ubuntu1) ... Setting up m4 (1.4.18-4) ... Setting up libxcb-shm0:s390x (1.13.1-2) ... Setting up libpaper-utils (1.1.28) ... Setting up libhcrypto4-heimdal:s390x (7.5.0+dfsg-3build1) ... Setting up libthai0:s390x (0.1.28-3) ... Setting up libwind0-heimdal:s390x (7.5.0+dfsg-3build1) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up liblapack-dev:s390x (3.8.0-8) ... update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode Setting up libgssapi-krb5-2:s390x (1.17-6) ... Setting up libcroco3:s390x (0.6.13-1) ... Setting up libssh-4:s390x (0.9.0-1ubuntu1) ... Setting up autoconf (2.69-11ubuntu1) ... Setting up dh-strip-nondeterminism (1.6.2-1) ... Setting up dwz (0.13-2) ... Setting up groff-base (1.22.4-3) ... Setting up libx11-6:s390x (2:1.6.8-1) ... Setting up libtiff5:s390x (4.1.0-1) ... Setting up libfontconfig1:s390x (2.13.1-2ubuntu2) ... Setting up libjpeg8-dev:s390x (8c-2ubuntu8) ... Setting up libsm6:s390x (2:1.2.3-1) ... Setting up libxmuu1:s390x (2:1.1.3-0ubuntu1) ... Setting up automake (1:1.16.1-4ubuntu3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up fontconfig (2.13.1-2ubuntu2) ... Regenerating fonts cache... done. Setting up gettext (0.19.8.1-9) ... Setting up libxrender1:s390x (1:0.9.10-1) ... Setting up gfortran-9 (9.2.1-19ubuntu1) ... Setting up libhx509-5-heimdal:s390x (7.5.0+dfsg-3build1) ... Setting up libpango-1.0-0:s390x (1.44.7-1) ... Setting up libjpeg-dev:s390x (8c-2ubuntu8) ... Setting up libxext6:s390x (2:1.3.4-0ubuntu1) ... Setting up man-db (2.9.0-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up gfortran (4:9.2.1-3.1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:s390x (1.16.0-4) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxt6:s390x (1:1.1.5-1) ... Setting up xauth (1:1.1-0ubuntu1) ... Setting up libxss1:s390x (1:1.2.3-1) ... Setting up libpangoft2-1.0-0:s390x (1.44.7-1) ... Setting up libpangocairo-1.0-0:s390x (1.44.7-1) ... Setting up libkrb5-26-heimdal:s390x (7.5.0+dfsg-3build1) ... Setting up libxft2:s390x (2.3.3-0ubuntu1) ... Setting up po-debconf (1.0.21) ... Setting up libtk8.6:s390x (8.6.9-2) ... Setting up libheimntlm0-heimdal:s390x (7.5.0+dfsg-3build1) ... Setting up libgssapi3-heimdal:s390x (7.5.0+dfsg-3build1) ... Setting up libldap-2.4-2:s390x (2.4.48+dfsg-1ubuntu3) ... Setting up libcurl4:s390x (7.65.3-1ubuntu4) ... Setting up r-base-core (3.6.1-7) ... Creating config file /etc/R/Renviron with new version Setting up r-bioc-biocgenerics (0.32.0-1) ... Setting up r-base-dev (3.6.1-7) ... Setting up r-cran-biocmanager (1.30.9+dfsg-1) ... Setting up r-bioc-zlibbioc (1.32.0+dfsg-1) ... Setting up r-bioc-biobase (2.46.0-1) ... Setting up r-bioc-preprocesscore (1.48.0-1) ... Setting up r-bioc-affyio (1.56.0-1) ... Setting up dh-autoreconf (19) ... Setting up debhelper (12.7.1ubuntu1) ... Setting up dh-r (20190917) ... Setting up sbuild-build-depends-r-bioc-affy-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.30-0ubuntu2) ... Processing triggers for systemd (243-3ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-166-generic s390x (s390x) Toolchain package versions: binutils_2.33.1-1ubuntu1 dpkg-dev_1.19.7ubuntu2 g++-9_9.2.1-19ubuntu1 gcc-9_9.2.1-19ubuntu1 libc6-dev_2.30-0ubuntu2 libstdc++-9-dev_9.2.1-19ubuntu1 libstdc++6_9.2.1-19ubuntu1 linux-libc-dev_5.3.0-21.22 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1 apt_1.9.4 autoconf_2.69-11ubuntu1 automake_1:1.16.1-4ubuntu3 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11ubuntu1 base-passwd_3.5.46 bash_5.0-4ubuntu1 binutils_2.33.1-1ubuntu1 binutils-common_2.33.1-1ubuntu1 binutils-s390x-linux-gnu_2.33.1-1ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.34-0.1ubuntu2 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110 coreutils_8.30-3ubuntu2 cpp_4:9.2.1-3.1ubuntu1 cpp-9_9.2.1-19ubuntu1 dash_0.5.10.2-6 dctrl-tools_2.24-3 debconf_1.5.73 debhelper_12.7.1ubuntu1 debianutils_4.9 dh-autoreconf_19 dh-r_20190917 dh-strip-nondeterminism_1.6.2-1 diffutils_1:3.7-3 dpkg_1.19.7ubuntu2 dpkg-dev_1.19.7ubuntu2 dwz_0.13-2 e2fsprogs_1.45.3-4ubuntu2 fakeroot_1.24-1 fdisk_2.34-0.1ubuntu2 file_1:5.37-6 findutils_4.6.0+git+20190209-2ubuntu1 fontconfig_2.13.1-2ubuntu2 fontconfig-config_2.13.1-2ubuntu2 fonts-dejavu-core_2.37-1 g++_4:9.2.1-3.1ubuntu1 g++-9_9.2.1-19ubuntu1 gcc_4:9.2.1-3.1ubuntu1 gcc-9_9.2.1-19ubuntu1 gcc-9-base_9.2.1-19ubuntu1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gfortran_4:9.2.1-3.1ubuntu1 gfortran-9_9.2.1-19ubuntu1 gpg_2.2.12-1ubuntu3 gpg-agent_2.2.12-1ubuntu3 gpgconf_2.2.12-1ubuntu3 gpgv_2.2.12-1ubuntu3 grep_3.3-1build1 groff-base_1.22.4-3 gzip_1.10-0ubuntu3 hostname_3.23 icu-devtools_63.2-2 init_1.57 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-5 libapparmor1_2.13.3-5ubuntu5 libapt-pkg5.90_1.9.4 libarchive-zip-perl_1.67-1 libargon2-1_0~20171227-0.2 libasan5_9.2.1-19ubuntu1 libasn1-8-heimdal_7.5.0+dfsg-3build1 libassuan0_2.5.3-7ubuntu1 libatomic1_9.2.1-19ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2ubuntu2 libaudit1_1:2.8.5-2ubuntu2 libbinutils_2.33.1-1ubuntu1 libblas-dev_3.8.0-8 libblas3_3.8.0-8 libblkid1_2.34-0.1ubuntu2 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libbz2-dev_1.0.8-2 libc-bin_2.30-0ubuntu2 libc-dev-bin_2.30-0ubuntu2 libc6_2.30-0ubuntu2 libc6-dev_2.30-0ubuntu2 libcairo2_1.16.0-4 libcap-ng0_0.7.9-2.1 libcap2_1:2.27-1 libcc1-0_9.2.1-19ubuntu1 libcom-err2_1.45.3-4ubuntu2 libcroco3_0.6.13-1 libcryptsetup12_2:2.2.1-1ubuntu1 libcurl4_7.65.3-1ubuntu4 libdatrie1_0.2.12-3 libdb5.3_5.3.28+dfsg1-0.6ubuntu1 libdebconfclient0_0.250ubuntu1 libdebhelper-perl_12.7.1ubuntu1 libdevmapper1.02.1_2:1.02.155-2ubuntu6 libdpkg-perl_1.19.7ubuntu2 libelf1_0.176-1.1 libexpat1_2.2.9-1 libext2fs2_1.45.3-4ubuntu2 libfakeroot_1.24-1 libfdisk1_2.34-0.1ubuntu2 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.6.2-1 libfile-which-perl_1.23-1 libfontconfig1_2.13.1-2ubuntu2 libfreetype6_2.10.1-2 libfribidi0_1.0.7-1 libgcc-9-dev_9.2.1-19ubuntu1 libgcc1_1:9.2.1-19ubuntu1 libgcrypt20_1.8.5-3ubuntu1 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran-9-dev_9.2.1-19ubuntu1 libgfortran5_9.2.1-19ubuntu1 libglib2.0-0_2.63.1-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.9-5ubuntu2 libgomp1_9.2.1-19ubuntu1 libgpg-error0_1.36-7 libgraphite2-3_1.3.13-11 libgssapi-krb5-2_1.17-6 libgssapi3-heimdal_7.5.0+dfsg-3build1 libharfbuzz0b_2.6.4-1 libhcrypto4-heimdal_7.5.0+dfsg-3build1 libheimbase1-heimdal_7.5.0+dfsg-3build1 libheimntlm0-heimdal_7.5.0+dfsg-3build1 libhogweed4_3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libhx509-5-heimdal_7.5.0+dfsg-3build1 libice6_2:1.0.10-0ubuntu1 libicu-dev_63.2-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libip4tc2_1.8.3-2ubuntu5 libisl21_0.21-2 libitm1_9.2.1-19ubuntu1 libjbig0_2.1-3.1build1 libjpeg-dev_8c-2ubuntu8 libjpeg-turbo8_2.0.3-0ubuntu1 libjpeg-turbo8-dev_2.0.3-0ubuntu1 libjpeg8_8c-2ubuntu8 libjpeg8-dev_8c-2ubuntu8 libjson-c4_0.13.1+dfsg-6 libk5crypto3_1.17-6 libkeyutils1_1.6-6ubuntu1 libkmod2_26-3ubuntu1 libkrb5-26-heimdal_7.5.0+dfsg-3build1 libkrb5-3_1.17-6 libkrb5support0_1.17-6 liblapack-dev_3.8.0-8 liblapack3_3.8.0-8 libldap-2.4-2_2.4.48+dfsg-1ubuntu3 libldap-common_2.4.48+dfsg-1ubuntu3 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblz4-1_1.9.2-1 liblzma-dev_5.2.4-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-6 libmagic1_1:5.37-6 libmount1_2.34-0.1ubuntu2 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses-dev_6.1+20191019-1ubuntu1 libncurses5-dev_6.1+20191019-1ubuntu1 libncurses6_6.1+20191019-1ubuntu1 libncursesw6_6.1+20191019-1ubuntu1 libnettle6_3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.39.2-1 libnpth0_1.6-1 libp11-kit0_0.23.18.1-2 libpam-modules_1.3.1-5ubuntu1 libpam-modules-bin_1.3.1-5ubuntu1 libpam-runtime_1.3.1-5ubuntu1 libpam0g_1.3.1-5ubuntu1 libpango-1.0-0_1.44.7-1 libpangocairo-1.0-0_1.44.7-1 libpangoft2-1.0-0_1.44.7-1 libpaper-utils_1.1.28 libpaper1_1.1.28 libpcre16-3_2:8.39-12 libpcre2-16-0_10.32-5 libpcre2-32-0_10.32-5 libpcre2-8-0_10.32-5 libpcre2-dev_10.32-5 libpcre2-posix0_10.32-5 libpcre3_2:8.39-12 libpcre3-dev_2:8.39-12 libpcre32-3_2:8.39-12 libpcrecpp0v5_2:8.39-12 libperl5.28_5.28.1-6build1 libperl5.30_5.30.0-9 libpipeline1_1.5.1-2 libpixman-1-0_0.38.4-0ubuntu1 libpng-dev_1.6.37-1 libpng16-16_1.6.37-1 libprocps7_2:3.3.15-2ubuntu3 libpsl5_0.20.2-2 libreadline-dev_8.0-3 libreadline8_8.0-3 libroken18-heimdal_7.5.0+dfsg-3build1 librtmp1_2.4+20151223.gitfa8646d.1-2build1 libsasl2-2_2.1.27+dfsg-1build3 libsasl2-modules-db_2.1.27+dfsg-1build3 libseccomp2_2.4.1-0ubuntu0.19.10.3 libselinux1_2.9-2build1 libsemanage-common_2.9-3build1 libsemanage1_2.9-3build1 libsepol1_2.9-2 libsigsegv2_2.12-2 libsm6_2:1.2.3-1 libsmartcols1_2.34-0.1ubuntu2 libsqlite3-0_3.30.1-1 libss2_1.45.3-4ubuntu2 libssh-4_0.9.0-1ubuntu1 libssl1.1_1.1.1c-1ubuntu4 libstdc++-9-dev_9.2.1-19ubuntu1 libstdc++6_9.2.1-19ubuntu1 libsub-override-perl_0.09-2 libswitch-perl_2.17-2 libsystemd0_243-3ubuntu1 libtasn1-6_4.14-3 libtcl8.6_8.6.9+dfsg-2 libthai-data_0.1.28-3 libthai0_0.1.28-3 libtiff5_4.1.0-1 libtinfo6_6.1+20191019-1ubuntu1 libtk8.6_8.6.9-2 libtool_2.4.6-11 libubsan1_9.2.1-19ubuntu1 libuchardet0_0.0.6-3 libudev1_243-3ubuntu1 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu2 libwebp6_0.6.1-2 libwind0-heimdal_7.5.0+dfsg-3build1 libx11-6_2:1.6.8-1 libx11-data_2:1.6.8-1 libxau6_1:1.0.9-0ubuntu1 libxcb-render0_1.13.1-2 libxcb-shm0_1.13.1-2 libxcb1_1.13.1-2 libxdmcp6_1:1.1.3-0ubuntu1 libxext6_2:1.3.4-0ubuntu1 libxft2_2.3.3-0ubuntu1 libxml2_2.9.4+dfsg1-7ubuntu5 libxmuu1_2:1.1.3-0ubuntu1 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.1.5-1 libzstd1_1.4.3+dfsg-1 linux-libc-dev_5.3.0-21.22 lockfile-progs_0.1.18 login_1:4.5-1.1ubuntu4 logsave_1.45.3-4ubuntu2 lsb-base_11.1.0ubuntu1 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-1 mawk_1.3.3-17ubuntu3 mount_2.34-0.1ubuntu2 ncurses-base_6.1+20191019-1ubuntu1 ncurses-bin_6.1+20191019-1ubuntu1 openssl_1.1.1c-1ubuntu4 optipng_0.7.7-1 passwd_1:4.5-1.1ubuntu4 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6build1 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 pkg-config_0.29.1-0ubuntu3 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu3 r-base-core_3.6.1-7 r-base-dev_3.6.1-7 r-bioc-affyio_1.56.0-1 r-bioc-biobase_2.46.0-1 r-bioc-biocgenerics_0.32.0-1 r-bioc-preprocesscore_1.48.0-1 r-bioc-zlibbioc_1.32.0+dfsg-1 r-cran-biocmanager_1.30.9+dfsg-1 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-affy-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 systemd_243-3ubuntu1 systemd-sysv_243-3ubuntu1 sysvinit-utils_2.96-1ubuntu1 tar_1.30+dfsg-6 tzdata_2019c-3 ubuntu-keyring_2018.09.18.1 ucf_3.0038+nmu1 unzip_6.0-25ubuntu1 util-linux_2.34-0.1ubuntu2 x11-common_1:7.7+19ubuntu12 xauth_1:1.1-0ubuntu1 xdg-utils_1.1.3-1ubuntu2 xz-utils_5.2.4-1 zip_3.0-11build1 zlib1g_1:1.2.11.dfsg-1ubuntu3 zlib1g-dev_1:1.2.11.dfsg-1ubuntu3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sat Nov 9 21:20:16 2019 UTC gpgv: using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54 gpgv: issuer "daissi@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-bioc-affy_1.64.0-1.dsc dpkg-source: info: extracting r-bioc-affy in r-bioc-affy-1.64.0 dpkg-source: info: unpacking r-bioc-affy_1.64.0.orig.tar.gz dpkg-source: info: unpacking r-bioc-affy_1.64.0-1.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-18079687 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-18079687 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-18079687 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package r-bioc-affy dpkg-buildpackage: info: source version 1.64.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x fakeroot debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules build-arch dh build-arch --buildsystem R dh_update_autotools_config -a -O--buildsystem=R dh_autoreconf -a -O--buildsystem=R dh_auto_configure -a -O--buildsystem=R dh_auto_build -a -O--buildsystem=R dh_auto_test -a -O--buildsystem=R create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --buildsystem R dh_testroot -a -O--buildsystem=R dh_prep -a -O--buildsystem=R dh_auto_install -a -O--buildsystem=R I: R packages needed for DEP8: runit I: R Package: affy Version: 1.64.0 I: Building using R version 3.6.1-7 I: R API version: r-api-3.5 I: Using built-time from d/changelog: Sat, 09 Nov 2019 22:12:13 +0100 mkdir -p /<>/debian/r-bioc-affy/usr/lib/R/site-library R CMD INSTALL -l /<>/debian/r-bioc-affy/usr/lib/R/site-library --clean . "--built-timestamp='Sat, 09 Nov 2019 22:12:13 +0100'" * installing *source* package ‘affy’ ... ** using staged installation checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for main in -lz... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking if zlib version >= 1.1.3... yes configure: creating ./config.status config.status: creating src/Makevars ** libs make[1]: Entering directory '/<>/src' gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -I"/usr/lib/R/site-library/preprocessCore/include" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -g -O2 -fdebug-prefix-map=/build/r-base-hBsFFT/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c chipbackground.c -o chipbackground.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -I"/usr/lib/R/site-library/preprocessCore/include" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -g -O2 -fdebug-prefix-map=/build/r-base-hBsFFT/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c getall_locations.c -o getall_locations.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -I"/usr/lib/R/site-library/preprocessCore/include" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -g -O2 -fdebug-prefix-map=/build/r-base-hBsFFT/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mas5calls.c -o mas5calls.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -I"/usr/lib/R/site-library/preprocessCore/include" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -g -O2 -fdebug-prefix-map=/build/r-base-hBsFFT/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rma2.c -o rma2.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -I"/usr/lib/R/site-library/preprocessCore/include" -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -g -O2 -fdebug-prefix-map=/build/r-base-hBsFFT/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rma_common.c -o rma_common.o gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o affy.so chipbackground.o getall_locations.o mas5calls.o rma2.o rma_common.o -lz -L/usr/lib/R/lib -lR make[1]: Leaving directory '/<>/src' make[1]: Entering directory '/<>/src' make[1]: Leaving directory '/<>/src' installing to /<>/debian/r-bioc-affy/usr/lib/R/site-library/00LOCK-r-bioc-affy-1.64.0/00new/affy/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (affy) W: Ignoring specified R dependency: R (>= 2.8.0) I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.1.12) I: Using r-bioc-biobase for Depends:Biobase (>= 2.5.5) I: Using r-cran-runit for Recommends:runit W: Cannot find a debian package for Suggests:tkWidgets (>= 1.19.0) W: Cannot find a debian package for Suggests:affydata W: Cannot find a debian package for Suggests:widgetTools I: Using r-bioc-affyio for Imports:affyio (>= 1.13.3) I: Using r-cran-biocmanager for Imports:BiocManager I: Using r-bioc-preprocesscore for Imports:preprocessCore I: Using r-bioc-zlibbioc for Imports:zlibbioc I: BioConductor API version: r-api-bioc-3.10 dh_installdocs -a -O--buildsystem=R dh_installchangelogs -a -O--buildsystem=R dh_installinit -a -O--buildsystem=R dh_installsystemduser -a -O--buildsystem=R dh_perl -a -O--buildsystem=R dh_link -a -O--buildsystem=R dh_strip_nondeterminism -a -O--buildsystem=R dh_compress -a -O--buildsystem=R dh_fixperms -a -O--buildsystem=R dh_missing -a -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -a -O--buildsystem=R dh_gencontrol -a -O--buildsystem=R dh_md5sums -a -O--buildsystem=R dh_builddeb -a -O--buildsystem=R INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing r-bioc-affy (in debian/r-bioc-affy); do_strip: , oemstrip: pkgstriptranslations: processing r-bioc-affy-dbgsym (in debian/.debhelper/r-bioc-affy/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-bioc-affy/DEBIAN/control, package r-bioc-affy, directory debian/r-bioc-affy pkgstripfiles: Truncating usr/share/doc/r-bioc-affy/changelog.Debian.gz to topmost ten records pkgstripfiles: processing control file: debian/.debhelper/r-bioc-affy/dbgsym-root/DEBIAN/control, package r-bioc-affy-dbgsym, directory debian/.debhelper/r-bioc-affy/dbgsym-root dpkg-deb: building package 'r-bioc-affy-dbgsym' in 'debian/.debhelper/scratch-space/build-r-bioc-affy/r-bioc-affy-dbgsym_1.64.0-1_s390x.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-bioc-affy ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-bioc-affy' in '../r-bioc-affy_1.64.0-1_s390x.deb'. Renaming r-bioc-affy-dbgsym_1.64.0-1_s390x.deb to r-bioc-affy-dbgsym_1.64.0-1_s390x.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../r-bioc-affy_1.64.0-1_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20191110-0511 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-bioc-affy_1.64.0-1_s390x.changes: ----------------------------------- Format: 1.8 Date: Sat, 09 Nov 2019 22:12:13 +0100 Source: r-bioc-affy Binary: r-bioc-affy Architecture: s390x Version: 1.64.0-1 Distribution: focal-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Dylan Aïssi Description: r-bioc-affy - BioConductor methods for Affymetrix Oligonucleotide Arrays Changes: r-bioc-affy (1.64.0-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 Checksums-Sha1: ac793958d644472f3c3acbd3c57e3375640908ec 35788 r-bioc-affy-dbgsym_1.64.0-1_s390x.ddeb 62de9d20d7ef1e9faf5819622114da78b72dd709 8896 r-bioc-affy_1.64.0-1_s390x.buildinfo 52132dd52ff381e14862fa75c98239223ef35705 1588332 r-bioc-affy_1.64.0-1_s390x.deb Checksums-Sha256: dc45c47d41056289c9e3a5f1847a4bd2257c09415930e8818c94f68239e4503c 35788 r-bioc-affy-dbgsym_1.64.0-1_s390x.ddeb cd14afd4acd8870c2cd44550fc182e123684d601521a91c311ad9f3412be1aa5 8896 r-bioc-affy_1.64.0-1_s390x.buildinfo da3a95a90ba4afef1b754e8e0124d4df10a6bdd38fb0c8d3d4c2a6e1b6d3004f 1588332 r-bioc-affy_1.64.0-1_s390x.deb Files: 28667edb4a39900cf90b9d90bdc445f7 35788 debug optional r-bioc-affy-dbgsym_1.64.0-1_s390x.ddeb 17bb32fd37428dc864f2a1ccaef03f42 8896 gnu-r optional r-bioc-affy_1.64.0-1_s390x.buildinfo d7f8c6ae5f010d67b9a62d0f825a4b7f 1588332 gnu-r optional r-bioc-affy_1.64.0-1_s390x.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-bioc-affy_1.64.0-1_s390x.deb ------------------------------ new debian package, version 2.0. size 1588332 bytes: control archive=2120 bytes. 772 bytes, 14 lines control 3859 bytes, 50 lines md5sums Package: r-bioc-affy Version: 1.64.0-1 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian R Packages Maintainers Installed-Size: 1964 Depends: r-base-core (>= 3.6.1-7), r-api-3.5, r-api-bioc-3.10, r-bioc-biocgenerics (>= 0.1.12), r-bioc-biobase (>= 2.5.5), r-bioc-affyio (>= 1.13.3), r-cran-biocmanager, r-bioc-preprocesscore, r-bioc-zlibbioc, libc6 (>= 2.4) Recommends: r-cran-runit Section: gnu-r Priority: optional Homepage: https://bioconductor.org/packages/affy/ Description: BioConductor methods for Affymetrix Oligonucleotide Arrays This is part of the BioConductor GNU R suite. The package contains functions for exploratory oligonucleotide array analysis. drwxr-xr-x root/root 0 2019-11-09 21:12 ./ drwxr-xr-x root/root 0 2019-11-09 21:12 ./usr/ drwxr-xr-x root/root 0 2019-11-09 21:12 ./usr/lib/ drwxr-xr-x root/root 0 2019-11-09 21:12 ./usr/lib/R/ drwxr-xr-x root/root 0 2019-11-09 21:12 ./usr/lib/R/site-library/ drwxr-xr-x root/root 0 2019-11-09 21:12 ./usr/lib/R/site-library/affy/ -rw-r--r-- root/root 710 2019-11-09 21:12 ./usr/lib/R/site-library/affy/CITATION -rw-r--r-- root/root 2402 2019-11-09 21:12 ./usr/lib/R/site-library/affy/DESCRIPTION -rw-r--r-- root/root 3465 2019-11-09 21:12 ./usr/lib/R/site-library/affy/INDEX drwxr-xr-x root/root 0 2019-11-09 21:12 ./usr/lib/R/site-library/affy/Meta/ -rw-r--r-- root/root 3111 2019-11-09 21:12 ./usr/lib/R/site-library/affy/Meta/Rd.rds -rw-r--r-- root/root 182 2019-11-09 21:12 ./usr/lib/R/site-library/affy/Meta/data.rds -rw-r--r-- root/root 111 2019-11-09 21:12 ./usr/lib/R/site-library/affy/Meta/demo.rds -rw-r--r-- 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+------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build-Space: 8936 Build-Time: 11 Distribution: focal-proposed Host Architecture: s390x Install-Time: 40 Job: r-bioc-affy_1.64.0-1.dsc Machine Architecture: s390x Package: r-bioc-affy Package-Time: 52 Source-Version: 1.64.0-1 Space: 8936 Status: successful Version: 1.64.0-1 -------------------------------------------------------------------------------- Finished at 20191110-0511 Build needed 00:00:52, 8936k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=s390x PACKAGEBUILD-18079687 Scanning for processes to kill in build PACKAGEBUILD-18079687