https://launchpad.net/ubuntu/+source/r-bioc-ballgown/2.22.0+dfsg-2/+build/21694102 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lgw01-amd64-049 4.15.0-144-generic #148-Ubuntu SMP Sat May 8 02:33:43 UTC 2021 x86_64 Buildd toolchain package versions: launchpad-buildd_196~482~ubuntu18.04.1 python3-lpbuildd_196~482~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.8 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 14 Jun 23:15:18 ntpdate[1752]: adjust time server 10.211.37.1 offset -0.001855 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=impish --arch=amd64 PACKAGEBUILD-21694102 --image-type chroot /home/buildd/filecache-default/470b94eb81e7101f5c7afd2cf17d7483b3ea9d4e Creating target for build PACKAGEBUILD-21694102 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=impish --arch=amd64 PACKAGEBUILD-21694102 Starting target for build PACKAGEBUILD-21694102 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=impish --arch=amd64 PACKAGEBUILD-21694102 'deb http://ftpmaster.internal/ubuntu impish main universe' 'deb http://ftpmaster.internal/ubuntu impish-security main universe' 'deb http://ftpmaster.internal/ubuntu impish-updates main universe' 'deb http://ftpmaster.internal/ubuntu impish-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-21694102 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=impish --arch=amd64 PACKAGEBUILD-21694102 Updating target for build PACKAGEBUILD-21694102 Get:1 http://ftpmaster.internal/ubuntu impish InRelease [269 kB] Get:2 http://ftpmaster.internal/ubuntu impish-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu impish-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu impish-proposed InRelease [121 kB] Get:5 http://ftpmaster.internal/ubuntu impish/main amd64 Packages [1410 kB] Get:6 http://ftpmaster.internal/ubuntu impish/main Translation-en [512 kB] Get:7 http://ftpmaster.internal/ubuntu impish/universe amd64 Packages [13.6 MB] Get:8 http://ftpmaster.internal/ubuntu impish/universe Translation-en [5462 kB] Get:9 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 Packages [122 kB] Get:10 http://ftpmaster.internal/ubuntu impish-proposed/main Translation-en [32.2 kB] Get:11 http://ftpmaster.internal/ubuntu impish-proposed/universe amd64 Packages [216 kB] Get:12 http://ftpmaster.internal/ubuntu impish-proposed/universe Translation-en [86.7 kB] Fetched 22.0 MB in 3s (7342 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-common binutils-x86-64-linux-gnu build-essential cpp cpp-10 dash debconf diffutils dpkg dpkg-dev e2fsprogs g++ g++-10 gcc gcc-10 gcc-10-base gcc-11-base gzip libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libbinutils libc-bin libc-dev-bin libc6 libc6-dev libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libdb5.3 libdevmapper1.02.1 libdpkg-perl libext2fs2 libgcc-10-dev libgcc-s1 libgcrypt20 libgnutls30 libgomp1 libgssapi-krb5-2 libhogweed6 libidn2-0 libisl23 libitm1 libk5crypto3 libkrb5-3 libkrb5support0 liblsan0 liblz4-1 liblzma5 libnettle8 libnsl-dev libnsl2 libpam-modules libpam-modules-bin libpam-runtime libpam0g libprocps8 libquadmath0 libreadline8 libsqlite3-0 libss2 libssl1.1 libstdc++-10-dev libstdc++6 libsystemd0 libtsan0 libubsan1 libudev1 libzstd1 linux-libc-dev logsave lto-disabled-list openssl pinentry-curses procps readline-common systemd systemd-sysv systemd-timesyncd sysvinit-utils usrmerge xz-utils 91 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 75.8 MB of archives. After this operation, 6504 kB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu impish/main amd64 libnsl-dev amd64 1.3.0-2 [66.2 kB] Get:2 http://ftpmaster.internal/ubuntu impish/main amd64 libcrypt-dev amd64 1:4.4.18-4ubuntu1 [104 kB] Get:3 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libc6-dev amd64 2.33-0ubuntu8 [2145 kB] Get:4 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libc-dev-bin amd64 2.33-0ubuntu8 [19.2 kB] Get:5 http://ftpmaster.internal/ubuntu impish/main amd64 libnsl2 amd64 1.3.0-2 [39.0 kB] Get:6 http://ftpmaster.internal/ubuntu impish/main amd64 libcrypt1 amd64 1:4.4.18-4ubuntu1 [75.6 kB] Get:7 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 linux-libc-dev amd64 5.11.0-20.21+21.10.1 [1236 kB] Get:8 http://ftpmaster.internal/ubuntu impish/main amd64 libasan6 amd64 11.1.0-3ubuntu1 [2045 kB] Get:9 http://ftpmaster.internal/ubuntu impish/main amd64 libubsan1 amd64 11.1.0-3ubuntu1 [840 kB] Get:10 http://ftpmaster.internal/ubuntu impish/main amd64 libtsan0 amd64 11.1.0-3ubuntu1 [2025 kB] Get:11 http://ftpmaster.internal/ubuntu impish/main amd64 libquadmath0 amd64 11.1.0-3ubuntu1 [146 kB] Get:12 http://ftpmaster.internal/ubuntu impish/main amd64 liblsan0 amd64 11.1.0-3ubuntu1 [891 kB] Get:13 http://ftpmaster.internal/ubuntu impish/main amd64 libitm1 amd64 11.1.0-3ubuntu1 [26.4 kB] Get:14 http://ftpmaster.internal/ubuntu impish/main amd64 libgomp1 amd64 11.1.0-3ubuntu1 [107 kB] Get:15 http://ftpmaster.internal/ubuntu impish/main amd64 gcc-11-base amd64 11.1.0-3ubuntu1 [20.2 kB] Get:16 http://ftpmaster.internal/ubuntu impish/main amd64 libgcc-s1 amd64 11.1.0-3ubuntu1 [42.1 kB] Get:17 http://ftpmaster.internal/ubuntu impish/main amd64 libcc1-0 amd64 11.1.0-3ubuntu1 [48.7 kB] Get:18 http://ftpmaster.internal/ubuntu impish/main amd64 libatomic1 amd64 11.1.0-3ubuntu1 [9224 B] Get:19 http://ftpmaster.internal/ubuntu impish/main amd64 libstdc++6 amd64 11.1.0-3ubuntu1 [584 kB] Get:20 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libc6 amd64 2.33-0ubuntu8 [2694 kB] Get:21 http://ftpmaster.internal/ubuntu impish/main amd64 base-files amd64 11.1ubuntu3 [60.9 kB] Get:22 http://ftpmaster.internal/ubuntu impish/main amd64 bash amd64 5.1-3ubuntu1 [731 kB] Get:23 http://ftpmaster.internal/ubuntu impish/main amd64 dpkg amd64 1.20.9ubuntu1 [1268 kB] Get:24 http://ftpmaster.internal/ubuntu impish/main amd64 debconf all 1.5.77 [121 kB] Get:25 http://ftpmaster.internal/ubuntu impish/main amd64 dash amd64 0.5.11+git20210120+802ebd4-1 [87.3 kB] Get:26 http://ftpmaster.internal/ubuntu impish/main amd64 diffutils amd64 1:3.7-5ubuntu1 [192 kB] Get:27 http://ftpmaster.internal/ubuntu impish/main amd64 gzip amd64 1.10-4ubuntu1 [92.9 kB] Get:28 http://ftpmaster.internal/ubuntu impish/main amd64 base-passwd amd64 3.5.50 [46.5 kB] Get:29 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libc-bin amd64 2.33-0ubuntu8 [646 kB] Get:30 http://ftpmaster.internal/ubuntu impish/main amd64 sysvinit-utils amd64 2.96-7ubuntu1 [20.1 kB] Get:31 http://ftpmaster.internal/ubuntu impish/main amd64 libgcrypt20 amd64 1.8.7-5ubuntu1 [430 kB] Get:32 http://ftpmaster.internal/ubuntu impish/main amd64 liblz4-1 amd64 1.9.3-2 [52.9 kB] Get:33 http://ftpmaster.internal/ubuntu impish/main amd64 liblzma5 amd64 5.2.5-2 [96.5 kB] Get:34 http://ftpmaster.internal/ubuntu impish/main amd64 systemd-sysv amd64 248.3-1ubuntu1 [10.3 kB] Get:35 http://ftpmaster.internal/ubuntu impish/main amd64 systemd-timesyncd amd64 248.3-1ubuntu1 [29.0 kB] Get:36 http://ftpmaster.internal/ubuntu impish/main amd64 libapparmor1 amd64 3.0.0-0ubuntu8 [34.4 kB] Get:37 http://ftpmaster.internal/ubuntu impish/main amd64 libnettle8 amd64 3.7.3-1 [147 kB] Get:38 http://ftpmaster.internal/ubuntu impish/main amd64 libhogweed6 amd64 3.7.3-1 [195 kB] Get:39 http://ftpmaster.internal/ubuntu impish/main amd64 libidn2-0 amd64 2.3.1-1 [49.8 kB] Get:40 http://ftpmaster.internal/ubuntu impish/main amd64 libgnutls30 amd64 3.7.1-4ubuntu1 [897 kB] Get:41 http://ftpmaster.internal/ubuntu impish/main amd64 libpam0g amd64 1.3.1-5ubuntu7 [55.8 kB] Get:42 http://ftpmaster.internal/ubuntu impish/main amd64 systemd amd64 248.3-1ubuntu1 [4136 kB] Get:43 http://ftpmaster.internal/ubuntu impish/main amd64 libsystemd0 amd64 248.3-1ubuntu1 [282 kB] Get:44 http://ftpmaster.internal/ubuntu impish/main amd64 libudev1 amd64 248.3-1ubuntu1 [71.4 kB] Get:45 http://ftpmaster.internal/ubuntu impish/main amd64 libzstd1 amd64 1.4.8+dfsg-2.1 [290 kB] Get:46 http://ftpmaster.internal/ubuntu impish/main amd64 libapt-pkg6.0 amd64 2.3.6 [815 kB] Get:47 http://ftpmaster.internal/ubuntu impish/main amd64 apt amd64 2.3.6 [1307 kB] Get:48 http://ftpmaster.internal/ubuntu impish/main amd64 libpam-modules-bin amd64 1.3.1-5ubuntu7 [39.1 kB] Get:49 http://ftpmaster.internal/ubuntu impish/main amd64 libpam-modules amd64 1.3.1-5ubuntu7 [261 kB] Get:50 http://ftpmaster.internal/ubuntu impish/main amd64 logsave amd64 1.46.2-1ubuntu2 [11.5 kB] Get:51 http://ftpmaster.internal/ubuntu impish/main amd64 libext2fs2 amd64 1.46.2-1ubuntu2 [194 kB] Get:52 http://ftpmaster.internal/ubuntu impish/main amd64 e2fsprogs amd64 1.46.2-1ubuntu2 [558 kB] Get:53 http://ftpmaster.internal/ubuntu impish/main amd64 libcom-err2 amd64 1.46.2-1ubuntu2 [10.8 kB] Get:54 http://ftpmaster.internal/ubuntu impish/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.8ubuntu1 [673 kB] Get:55 http://ftpmaster.internal/ubuntu impish/main amd64 libpam-runtime all 1.3.1-5ubuntu7 [37.3 kB] Get:56 http://ftpmaster.internal/ubuntu impish/main amd64 libk5crypto3 amd64 1.18.3-5 [76.1 kB] Get:57 http://ftpmaster.internal/ubuntu impish/main amd64 libkrb5support0 amd64 1.18.3-5 [29.9 kB] Get:58 http://ftpmaster.internal/ubuntu impish/main amd64 libkrb5-3 amd64 1.18.3-5 [313 kB] Get:59 http://ftpmaster.internal/ubuntu impish/main amd64 libgssapi-krb5-2 amd64 1.18.3-5 [130 kB] Get:60 http://ftpmaster.internal/ubuntu impish/main amd64 libssl1.1 amd64 1.1.1j-1ubuntu4 [1324 kB] Get:61 http://ftpmaster.internal/ubuntu impish/main amd64 libprocps8 amd64 2:3.3.17-5ubuntu2 [32.7 kB] Get:62 http://ftpmaster.internal/ubuntu impish/main amd64 libss2 amd64 1.46.2-1ubuntu2 [11.4 kB] Get:63 http://ftpmaster.internal/ubuntu impish/main amd64 procps amd64 2:3.3.17-5ubuntu2 [365 kB] Get:64 http://ftpmaster.internal/ubuntu impish/main amd64 usrmerge all 25ubuntu1 [53.5 kB] Get:65 http://ftpmaster.internal/ubuntu impish/main amd64 libdevmapper1.02.1 amd64 2:1.02.175-2.1ubuntu1 [128 kB] Get:66 http://ftpmaster.internal/ubuntu impish/main amd64 readline-common all 8.1-2 [54.1 kB] Get:67 http://ftpmaster.internal/ubuntu impish/main amd64 libreadline8 amd64 8.1-2 [138 kB] Get:68 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libsqlite3-0 amd64 3.35.5-1 [601 kB] Get:69 http://ftpmaster.internal/ubuntu impish/main amd64 openssl amd64 1.1.1j-1ubuntu4 [623 kB] Get:70 http://ftpmaster.internal/ubuntu impish/main amd64 xz-utils amd64 5.2.5-2 [82.0 kB] Get:71 http://ftpmaster.internal/ubuntu impish/main amd64 libctf0 amd64 2.36.50.20210603-0ubuntu1 [95.5 kB] Get:72 http://ftpmaster.internal/ubuntu impish/main amd64 libctf-nobfd0 amd64 2.36.50.20210603-0ubuntu1 [98.5 kB] Get:73 http://ftpmaster.internal/ubuntu impish/main amd64 binutils-x86-64-linux-gnu amd64 2.36.50.20210603-0ubuntu1 [1858 kB] Get:74 http://ftpmaster.internal/ubuntu impish/main amd64 binutils amd64 2.36.50.20210603-0ubuntu1 [3392 B] Get:75 http://ftpmaster.internal/ubuntu impish/main amd64 libbinutils amd64 2.36.50.20210603-0ubuntu1 [587 kB] Get:76 http://ftpmaster.internal/ubuntu impish/main amd64 binutils-common amd64 2.36.50.20210603-0ubuntu1 [53.3 kB] Get:77 http://ftpmaster.internal/ubuntu impish/main amd64 g++-10 amd64 10.3.0-4ubuntu1 [9813 kB] Get:78 http://ftpmaster.internal/ubuntu impish/main amd64 gcc-10 amd64 10.3.0-4ubuntu1 [17.5 MB] Get:79 http://ftpmaster.internal/ubuntu impish/main amd64 libstdc++-10-dev amd64 10.3.0-4ubuntu1 [1759 kB] Get:80 http://ftpmaster.internal/ubuntu impish/main amd64 libgcc-10-dev amd64 10.3.0-4ubuntu1 [2340 kB] Get:81 http://ftpmaster.internal/ubuntu impish/main amd64 cpp-10 amd64 10.3.0-4ubuntu1 [8619 kB] Get:82 http://ftpmaster.internal/ubuntu impish/main amd64 gcc-10-base amd64 10.3.0-4ubuntu1 [20.5 kB] Get:83 http://ftpmaster.internal/ubuntu impish/main amd64 libisl23 amd64 0.24-1 [668 kB] Get:84 http://ftpmaster.internal/ubuntu impish/main amd64 g++ amd64 4:10.3.0-1ubuntu3 [1608 B] Get:85 http://ftpmaster.internal/ubuntu impish/main amd64 gcc amd64 4:10.3.0-1ubuntu3 [5216 B] Get:86 http://ftpmaster.internal/ubuntu impish/main amd64 cpp amd64 4:10.3.0-1ubuntu3 [27.7 kB] Get:87 http://ftpmaster.internal/ubuntu impish/main amd64 dpkg-dev all 1.20.9ubuntu1 [937 kB] Get:88 http://ftpmaster.internal/ubuntu impish/main amd64 libdpkg-perl all 1.20.9ubuntu1 [232 kB] Get:89 http://ftpmaster.internal/ubuntu impish/main amd64 lto-disabled-list all 10 [12.2 kB] Get:90 http://ftpmaster.internal/ubuntu impish/main amd64 build-essential amd64 12.9ubuntu1 [4740 B] Get:91 http://ftpmaster.internal/ubuntu impish/main amd64 pinentry-curses amd64 1.1.1-1 [32.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 75.8 MB in 1s (50.7 MB/s) (Reading database ... 13130 files and directories currently installed.) 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Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from random generator. Setting up systemd-sysv (248.3-1ubuntu1) ... Processing triggers for libc-bin (2.33-0ubuntu8) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-21694102 amd64 impish-proposed -c chroot:build-PACKAGEBUILD-21694102 --arch=amd64 --dist=impish-proposed --nolog -A r-bioc-ballgown_2.22.0+dfsg-2.dsc Initiating build PACKAGEBUILD-21694102 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-144-generic #148-Ubuntu SMP Sat May 8 02:33:43 UTC 2021 x86_64 sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on lgw01-amd64-049.buildd +==============================================================================+ | r-bioc-ballgown 2.22.0+dfsg-2 (amd64) Mon, 14 Jun 2021 23:15:45 +0000 | +==============================================================================+ Package: r-bioc-ballgown Version: 2.22.0+dfsg-2 Source Version: 2.22.0+dfsg-2 Distribution: impish-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-21694102/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-bioc-ballgown_2.22.0+dfsg-2.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/r-bioc-ballgown-2wlT89/r-bioc-ballgown-2.22.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-ballgown-2wlT89' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-PgMKVM/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-PgMKVM/apt_archive ./ InRelease Get:2 copy:/<>/resolver-PgMKVM/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-PgMKVM/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-PgMKVM/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-PgMKVM/apt_archive ./ Packages [431 B] Fetched 1737 B in 0s (112 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 860 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-PgMKVM/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [860 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 860 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13218 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-genomicranges (>= 1.17.25), r-bioc-iranges (>= 1.99.22), r-bioc-s4vectors, r-cran-rcolorbrewer, r-bioc-sva, r-bioc-limma, r-bioc-rtracklayer (>= 1.29.25), r-bioc-biobase (>= 2.25.0), r-bioc-genomeinfodb, r-cran-knitr, r-cran-markdown Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-genomicranges (>= 1.17.25), r-bioc-iranges (>= 1.99.22), r-bioc-s4vectors, r-cran-rcolorbrewer, r-bioc-sva, r-bioc-limma, r-bioc-rtracklayer (>= 1.29.25), r-bioc-biobase (>= 2.25.0), r-bioc-genomeinfodb, r-cran-knitr, r-cran-markdown dpkg-deb: building package 'sbuild-build-depends-r-bioc-ballgown-dummy' in '/<>/resolver-PgMKVM/apt_archive/sbuild-build-depends-r-bioc-ballgown-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-ballgown-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-PgMKVM/apt_archive ./ InRelease Get:2 copy:/<>/resolver-PgMKVM/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-PgMKVM/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-PgMKVM/apt_archive ./ Sources [614 B] Get:5 copy:/<>/resolver-PgMKVM/apt_archive ./ Packages [695 B] Fetched 2272 B in 0s (157 kB/s) Reading package lists... Reading package lists... Install r-bioc-ballgown build dependencies (apt-based resolver) --------------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils dctrl-tools debhelper debugedit dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-glyphicons-halflings fonts-mathjax gettext gettext-base gfortran gfortran-10 groff-base icu-devtools intltool-debian libalgorithm-c3-perl libarchive-zip-perl libasn1-8-heimdal libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libbz2-dev libc-ares2 libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdw1 libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-10-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi3-heimdal libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhttp-date-perl libhttp-message-perl libhx509-5-heimdal libice6 libicu-dev libicu67 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-mathjax libkrb5-26-heimdal liblapack-dev liblapack3 libldap-2.4-2 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev libnghttp2-14 libnode72 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp6 libwind0-heimdal libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db node-highlight.js node-normalize.css nodejs pkg-config po-debconf r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-delayedarray r-bioc-edger r-bioc-genefilter r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges r-bioc-limma r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-sva r-bioc-xvector r-bioc-zlibbioc r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-cachem r-cran-crayon r-cran-curl r-cran-dbi r-cran-digest r-cran-ellipsis r-cran-evaluate r-cran-fastmap r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-glue r-cran-highr r-cran-httr r-cran-jsonlite r-cran-knitr r-cran-lambda.r r-cran-lattice r-cran-littler r-cran-locfit r-cran-magrittr r-cran-markdown r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-nlme r-cran-openssl r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-rlang r-cran-rsqlite r-cran-snow r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-vctrs r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-10-multilib gfortran-10-doc libcoarrays-dev groff liblapack-doc libboost-doc libboost1.74-doc libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev icu-doc fonts-mathjax-extras fonts-stix libjs-mathjax-doc liblzma-doc ncurses-doc libscalar-number-perl readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk libwww-perl libcurl4-gnutls-dev m4-doc apparmor less www-browser libjs-html5shiv npm libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo r-bioc-go.db r-bioc-org.hs.eg.db r-cran-runit r-bioc-graph r-bioc-biocstyle r-bioc-all r-bioc-affy r-bioc-deseq2 r-cran-foreach r-cran-bbmisc r-bioc-variantannotation r-bioc-shortread r-cran-codetools r-cran-data.table r-bioc-bsgenome r-bioc-genomicfeatures r-bioc-hdf5array r-bioc-delayedmatrixstats r-cran-readr r-bioc-rhdf5 r-bioc-gviz r-bioc-annotationhub r-bioc-dexseq r-cran-biasedurn r-cran-ellipse r-cran-gplots r-bioc-sparsematrixstats r-cran-rmarkdown r-cran-testthat r-cran-roxygen2 r-cran-covr r-cran-pillar r-cran-rstudioapi r-cran-rmysql r-cran-ggplot2 r-cran-shiny r-cran-r.utils r-cran-forcats r-cran-dplyr r-cran-withr r-cran-httpuv r-cran-jpeg r-cran-png r-cran-xml2 r-cran-plyr r-cran-sf r-cran-rgl r-cran-htmlwidgets r-cran-webshot r-cran-reticulate r-cran-magick r-cran-ragg r-cran-getopt r-cran-interp r-cran-gam r-cran-base64enc r-cran-scales r-cran-inline r-cran-cli r-cran-gh r-cran-hms r-cran-rvest r-cran-rmpi r-cran-rsprng r-cran-rlecuyer r-cran-zeallot r-cran-tinytex r-cran-htmltools r-cran-remotes r-cran-plm r-cran-zoo Recommended packages: devscripts cme git-buildpackage curl | wget | lynx bzip2-doc libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libclone-perl javascript-common libldap-common libdevel-partialdump-perl libpng-tools publicsuffix libsasl2-modules libltdl-dev nodejs-doc libmail-sendmail-perl r-recommended r-doc-html r-bioc-go.db r-cran-runit r-cran-batchjobs r-cran-doparallel r-cran-batchtools r-cran-rmpi r-cran-statmod r-cran-class r-bioc-shortread r-cran-mass r-bioc-org.hs.eg.db r-cran-testthat r-bioc-bladderbatch r-cran-withr r-cran-mockery r-cran-httpuv r-cran-webutils r-cran-testit r-cran-codetools r-cran-sp r-cran-tikzdevice r-cran-rmarkdown r-cran-tinytex r-cran-tibble r-cran-sodium r-cran-dbitest r-cran-htmltools r-cran-htmlwidgets r-cran-generics r-cran-xml2 r-cran-dplyr r-cran-waldo libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils dctrl-tools debhelper debugedit dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-glyphicons-halflings fonts-mathjax gettext gettext-base gfortran gfortran-10 groff-base icu-devtools intltool-debian libalgorithm-c3-perl libarchive-zip-perl libasn1-8-heimdal libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libbz2-dev libc-ares2 libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdw1 libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-10-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi3-heimdal libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhttp-date-perl libhttp-message-perl libhx509-5-heimdal libice6 libicu-dev libicu67 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-mathjax libkrb5-26-heimdal liblapack-dev liblapack3 libldap-2.4-2 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev libnghttp2-14 libnode72 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp6 libwind0-heimdal libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db node-highlight.js node-normalize.css nodejs pkg-config po-debconf r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-delayedarray r-bioc-edger r-bioc-genefilter r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges r-bioc-limma r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-sva r-bioc-xvector r-bioc-zlibbioc r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-cachem r-cran-crayon r-cran-curl r-cran-dbi r-cran-digest r-cran-ellipsis r-cran-evaluate r-cran-fastmap r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-glue r-cran-highr r-cran-httr r-cran-jsonlite r-cran-knitr r-cran-lambda.r r-cran-lattice r-cran-littler r-cran-locfit r-cran-magrittr r-cran-markdown r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-nlme r-cran-openssl r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-rlang r-cran-rsqlite r-cran-snow r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-vctrs r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml sbuild-build-depends-r-bioc-ballgown-dummy ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 272 newly installed, 0 to remove and 0 not upgraded. Need to get 214 MB of archives. After this operation, 665 MB of additional disk space will be used. Get:1 copy:/<>/resolver-PgMKVM/apt_archive ./ sbuild-build-depends-r-bioc-ballgown-dummy 0.invalid.0 [984 B] Get:2 http://ftpmaster.internal/ubuntu impish/main amd64 bsdextrautils amd64 2.36.1-7ubuntu2 [81.6 kB] Get:3 http://ftpmaster.internal/ubuntu impish/main amd64 libuchardet0 amd64 0.0.7-1 [68.0 kB] Get:4 http://ftpmaster.internal/ubuntu impish/main amd64 groff-base amd64 1.22.4-6 [864 kB] Get:5 http://ftpmaster.internal/ubuntu impish/main amd64 libpipeline1 amd64 1.5.3-1 [27.8 kB] Get:6 http://ftpmaster.internal/ubuntu impish/main amd64 man-db amd64 2.9.4-2 [1154 kB] Get:7 http://ftpmaster.internal/ubuntu impish/universe amd64 node-normalize.css all 8.0.1-3 [10.3 kB] Get:8 http://ftpmaster.internal/ubuntu impish/main amd64 libmd0 amd64 1.0.3-3build1 [21.5 kB] Get:9 http://ftpmaster.internal/ubuntu impish/main amd64 libbsd0 amd64 0.11.3-1ubuntu2 [41.1 kB] Get:10 http://ftpmaster.internal/ubuntu impish/main amd64 libelf1 amd64 0.185-1 [47.2 kB] Get:11 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amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [17.5 kB] Get:43 http://ftpmaster.internal/ubuntu impish/main amd64 dh-strip-nondeterminism all 1.12.0-1 [5228 B] Get:44 http://ftpmaster.internal/ubuntu impish/main amd64 libdw1 amd64 0.185-1 [225 kB] Get:45 http://ftpmaster.internal/ubuntu impish/main amd64 debugedit amd64 1:0.2+20210520-0ubuntu1 [44.0 kB] Get:46 http://ftpmaster.internal/ubuntu impish/main amd64 dwz amd64 0.14-1 [98.1 kB] Get:47 http://ftpmaster.internal/ubuntu impish/main amd64 gettext amd64 0.21-3ubuntu2 [825 kB] Get:48 http://ftpmaster.internal/ubuntu impish/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:49 http://ftpmaster.internal/ubuntu impish/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] Get:50 http://ftpmaster.internal/ubuntu impish/main amd64 debhelper all 13.3.4ubuntu1 [920 kB] Get:51 http://ftpmaster.internal/ubuntu impish/main amd64 zip amd64 3.0-12 [162 kB] Get:52 http://ftpmaster.internal/ubuntu impish/main amd64 unzip amd64 6.0-26ubuntu1 [168 kB] Get:53 http://ftpmaster.internal/ubuntu impish/main amd64 libpaper1 amd64 1.1.28 [13.0 kB] Get:54 http://ftpmaster.internal/ubuntu impish/main amd64 libpaper-utils amd64 1.1.28 [8400 B] Get:55 http://ftpmaster.internal/ubuntu impish/main amd64 xdg-utils all 1.1.3-2ubuntu2 [61.5 kB] Get:56 http://ftpmaster.internal/ubuntu impish/main amd64 libblas3 amd64 3.9.0-3ubuntu2 [199 kB] Get:57 http://ftpmaster.internal/ubuntu impish/main amd64 libbrotli1 amd64 1.0.9-2build2 [274 kB] Get:58 http://ftpmaster.internal/ubuntu impish/main amd64 libfreetype6 amd64 2.10.4+dfsg-1build1 [348 kB] Get:59 http://ftpmaster.internal/ubuntu impish/main amd64 fonts-dejavu-core all 2.37-2build1 [1041 kB] Get:60 http://ftpmaster.internal/ubuntu impish/main amd64 fontconfig-config all 2.13.1-4.2ubuntu3 [28.2 kB] Get:61 http://ftpmaster.internal/ubuntu impish/main amd64 libfontconfig1 amd64 2.13.1-4.2ubuntu3 [116 kB] Get:62 http://ftpmaster.internal/ubuntu impish/main amd64 libpixman-1-0 amd64 0.40.0-1build2 [236 kB] Get:63 http://ftpmaster.internal/ubuntu impish/main amd64 libxcb-render0 amd64 1.14-3ubuntu1 [14.8 kB] Get:64 http://ftpmaster.internal/ubuntu impish/main amd64 libxcb-shm0 amd64 1.14-3ubuntu1 [5588 B] Get:65 http://ftpmaster.internal/ubuntu impish/main amd64 libxrender1 amd64 1:0.9.10-1build2 [18.5 kB] Get:66 http://ftpmaster.internal/ubuntu impish/main amd64 libcairo2 amd64 1.16.0-5ubuntu1 [589 kB] Get:67 http://ftpmaster.internal/ubuntu impish/main amd64 libroken18-heimdal amd64 7.7.0+dfsg-2 [41.8 kB] Get:68 http://ftpmaster.internal/ubuntu impish/main amd64 libasn1-8-heimdal amd64 7.7.0+dfsg-2 [181 kB] Get:69 http://ftpmaster.internal/ubuntu impish/main amd64 libheimbase1-heimdal amd64 7.7.0+dfsg-2 [29.7 kB] Get:70 http://ftpmaster.internal/ubuntu impish/main amd64 libhcrypto4-heimdal amd64 7.7.0+dfsg-2 [88.0 kB] Get:71 http://ftpmaster.internal/ubuntu impish/main amd64 libwind0-heimdal amd64 7.7.0+dfsg-2 [47.6 kB] Get:72 http://ftpmaster.internal/ubuntu impish/main amd64 libhx509-5-heimdal amd64 7.7.0+dfsg-2 [107 kB] Get:73 http://ftpmaster.internal/ubuntu impish/main amd64 libkrb5-26-heimdal amd64 7.7.0+dfsg-2 [207 kB] Get:74 http://ftpmaster.internal/ubuntu impish/main amd64 libheimntlm0-heimdal amd64 7.7.0+dfsg-2 [15.1 kB] Get:75 http://ftpmaster.internal/ubuntu impish/main amd64 libgssapi3-heimdal amd64 7.7.0+dfsg-2 [96.5 kB] Get:76 http://ftpmaster.internal/ubuntu impish/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1 [14.6 kB] Get:77 http://ftpmaster.internal/ubuntu impish/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1 [46.0 kB] Get:78 http://ftpmaster.internal/ubuntu impish/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-2ubuntu1 [156 kB] Get:79 http://ftpmaster.internal/ubuntu impish/main amd64 libnghttp2-14 amd64 1.43.0-1 [72.5 kB] Get:80 http://ftpmaster.internal/ubuntu impish/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2build2 [55.0 kB] Get:81 http://ftpmaster.internal/ubuntu impish/main amd64 libssh-4 amd64 0.9.5-1 [172 kB] Get:82 http://ftpmaster.internal/ubuntu impish/main amd64 libcurl4 amd64 7.74.0-1.2ubuntu2 [251 kB] Get:83 http://ftpmaster.internal/ubuntu impish/main amd64 libjpeg-turbo8 amd64 2.0.6-0ubuntu2 [117 kB] Get:84 http://ftpmaster.internal/ubuntu impish/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B] Get:85 http://ftpmaster.internal/ubuntu impish/main amd64 libgfortran5 amd64 11.1.0-3ubuntu1 [716 kB] Get:86 http://ftpmaster.internal/ubuntu impish/main amd64 liblapack3 amd64 3.9.0-3ubuntu2 [2255 kB] Get:87 http://ftpmaster.internal/ubuntu impish/main amd64 fontconfig amd64 2.13.1-4.2ubuntu3 [171 kB] Get:88 http://ftpmaster.internal/ubuntu impish/main amd64 libgraphite2-3 amd64 1.3.14-1 [73.7 kB] Get:89 http://ftpmaster.internal/ubuntu impish/main amd64 libharfbuzz0b amd64 2.7.4-1ubuntu1 [345 kB] Get:90 http://ftpmaster.internal/ubuntu impish/main amd64 libthai-data all 0.1.28-4 [134 kB] Get:91 http://ftpmaster.internal/ubuntu impish/main amd64 libdatrie1 amd64 0.2.13-1ubuntu2 [19.4 kB] Get:92 http://ftpmaster.internal/ubuntu impish/main amd64 libthai0 amd64 0.1.28-4 [18.0 kB] Get:93 http://ftpmaster.internal/ubuntu impish/main amd64 libpango-1.0-0 amd64 1.48.2-1build2 [169 kB] Get:94 http://ftpmaster.internal/ubuntu impish/main amd64 libpangoft2-1.0-0 amd64 1.48.2-1build2 [36.9 kB] Get:95 http://ftpmaster.internal/ubuntu impish/main amd64 libpangocairo-1.0-0 amd64 1.48.2-1build2 [25.2 kB] Get:96 http://ftpmaster.internal/ubuntu impish/main amd64 libtcl8.6 amd64 8.6.11+dfsg-1 [913 kB] Get:97 http://ftpmaster.internal/ubuntu impish/main amd64 libdeflate0 amd64 1.7-1ubuntu1 [52.6 kB] Get:98 http://ftpmaster.internal/ubuntu impish/main amd64 libjbig0 amd64 2.1-3.1build1 [26.7 kB] Get:99 http://ftpmaster.internal/ubuntu impish/main amd64 libwebp6 amd64 0.6.1-2.1 [183 kB] Get:100 http://ftpmaster.internal/ubuntu impish-proposed/main amd64 libtiff5 amd64 4.3.0-1 [168 kB] Get:101 http://ftpmaster.internal/ubuntu impish/main amd64 libxft2 amd64 2.3.3-0ubuntu3 [38.9 kB] Get:102 http://ftpmaster.internal/ubuntu impish/main amd64 x11-common all 1:7.7+22ubuntu1 [22.3 kB] Get:103 http://ftpmaster.internal/ubuntu impish/main amd64 libxss1 amd64 1:1.2.3-1 [8140 B] Get:104 http://ftpmaster.internal/ubuntu impish/main amd64 libtk8.6 amd64 8.6.11-2 [721 kB] Get:105 http://ftpmaster.internal/ubuntu impish/main amd64 libice6 amd64 2:1.0.10-1 [40.2 kB] Get:106 http://ftpmaster.internal/ubuntu impish/main amd64 libsm6 amd64 2:1.2.3-1 [16.1 kB] Get:107 http://ftpmaster.internal/ubuntu impish/main amd64 libxt6 amd64 1:1.2.0-1 [160 kB] Get:108 http://ftpmaster.internal/ubuntu impish/universe amd64 r-base-core amd64 4.0.4-1build1 [25.1 MB] Get:109 http://ftpmaster.internal/ubuntu impish/main amd64 libgfortran-10-dev amd64 10.3.0-4ubuntu1 [777 kB] Get:110 http://ftpmaster.internal/ubuntu impish/main amd64 gfortran-10 amd64 10.3.0-4ubuntu1 [9532 kB] Get:111 http://ftpmaster.internal/ubuntu impish/main amd64 gfortran amd64 4:10.3.0-1ubuntu3 [1372 B] Get:112 http://ftpmaster.internal/ubuntu impish/main amd64 libblas-dev amd64 3.9.0-3ubuntu2 [147 kB] Get:113 http://ftpmaster.internal/ubuntu impish/main amd64 liblapack-dev amd64 3.9.0-3ubuntu2 [4210 kB] Get:114 http://ftpmaster.internal/ubuntu impish/main amd64 libncurses-dev amd64 6.2+20201114-2build1 [344 kB] Get:115 http://ftpmaster.internal/ubuntu impish/main amd64 libncurses5-dev amd64 6.2+20201114-2build1 [996 B] Get:116 http://ftpmaster.internal/ubuntu impish/main amd64 libreadline-dev amd64 8.1-2 [148 kB] Get:117 http://ftpmaster.internal/ubuntu impish/main amd64 libjpeg-turbo8-dev amd64 2.0.6-0ubuntu2 [238 kB] Get:118 http://ftpmaster.internal/ubuntu impish/main amd64 libjpeg8-dev amd64 8c-2ubuntu8 [1552 B] Get:119 http://ftpmaster.internal/ubuntu impish/main amd64 libjpeg-dev amd64 8c-2ubuntu8 [1546 B] Get:120 http://ftpmaster.internal/ubuntu impish/main amd64 libpcre2-16-0 amd64 10.36-2ubuntu5 [189 kB] Get:121 http://ftpmaster.internal/ubuntu impish/main amd64 libpcre2-32-0 amd64 10.36-2ubuntu5 [179 kB] Get:122 http://ftpmaster.internal/ubuntu impish/main amd64 libpcre2-posix2 amd64 10.36-2ubuntu5 [5996 B] Get:123 http://ftpmaster.internal/ubuntu impish/main amd64 libpcre2-dev amd64 10.36-2ubuntu5 [686 kB] Get:124 http://ftpmaster.internal/ubuntu impish/main amd64 libpcre16-3 amd64 2:8.39-13build3 [153 kB] Get:125 http://ftpmaster.internal/ubuntu impish/main amd64 libpcre32-3 amd64 2:8.39-13build3 [144 kB] Get:126 http://ftpmaster.internal/ubuntu impish/main amd64 libpcrecpp0v5 amd64 2:8.39-13build3 [15.3 kB] Get:127 http://ftpmaster.internal/ubuntu impish/main amd64 libpcre3-dev amd64 2:8.39-13build3 [544 kB] Get:128 http://ftpmaster.internal/ubuntu impish/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2ubuntu6 [156 kB] Get:129 http://ftpmaster.internal/ubuntu impish/main amd64 libpng-dev amd64 1.6.37-3build3 [179 kB] Get:130 http://ftpmaster.internal/ubuntu impish/main amd64 libbz2-dev amd64 1.0.8-4ubuntu3 [30.3 kB] Get:131 http://ftpmaster.internal/ubuntu impish/main amd64 liblzma-dev amd64 5.2.5-2 [151 kB] Get:132 http://ftpmaster.internal/ubuntu impish/main amd64 icu-devtools amd64 67.1-6ubuntu2 [182 kB] Get:133 http://ftpmaster.internal/ubuntu impish/main amd64 libicu-dev amd64 67.1-6ubuntu2 [9581 kB] Get:134 http://ftpmaster.internal/ubuntu impish/main amd64 pkg-config amd64 0.29.2-1ubuntu1 [46.2 kB] Get:135 http://ftpmaster.internal/ubuntu impish/universe amd64 r-base-dev all 4.0.4-1build1 [4524 B] Get:136 http://ftpmaster.internal/ubuntu impish/main amd64 libfile-which-perl all 1.23-1 [13.8 kB] Get:137 http://ftpmaster.internal/ubuntu impish/universe amd64 libswitch-perl all 2.17-2.1 [18.3 kB] Get:138 http://ftpmaster.internal/ubuntu impish/main amd64 libencode-locale-perl all 1.05-1.1 [11.8 kB] Get:139 http://ftpmaster.internal/ubuntu impish/main amd64 libtimedate-perl all 2.3300-2 [34.0 kB] Get:140 http://ftpmaster.internal/ubuntu impish/main amd64 libhttp-date-perl all 6.05-1 [9920 B] Get:141 http://ftpmaster.internal/ubuntu impish/main amd64 libio-html-perl all 1.004-2 [15.4 kB] Get:142 http://ftpmaster.internal/ubuntu impish/main amd64 liblwp-mediatypes-perl all 6.04-1 [19.5 kB] Get:143 http://ftpmaster.internal/ubuntu impish/main amd64 liburi-perl all 5.08-1 [77.4 kB] Get:144 http://ftpmaster.internal/ubuntu impish/main amd64 libhttp-message-perl all 6.29-1 [75.5 kB] Get:145 http://ftpmaster.internal/ubuntu impish/main amd64 libparams-util-perl amd64 1.102-1build1 [21.8 kB] Get:146 http://ftpmaster.internal/ubuntu impish/main amd64 libsub-install-perl all 0.928-1.1 [9972 B] Get:147 http://ftpmaster.internal/ubuntu impish/main amd64 libdata-optlist-perl all 0.110-1.1 [10.2 kB] Get:148 http://ftpmaster.internal/ubuntu impish/main amd64 libb-hooks-op-check-perl amd64 0.22-1build3 [10.3 kB] Get:149 http://ftpmaster.internal/ubuntu impish/main amd64 libdynaloader-functions-perl all 0.003-1.1 [12.1 kB] Get:150 http://ftpmaster.internal/ubuntu impish/main amd64 libdevel-callchecker-perl amd64 0.008-1ubuntu2 [14.5 kB] Get:151 http://ftpmaster.internal/ubuntu impish/main amd64 libparams-classify-perl amd64 0.015-1build3 [21.1 kB] Get:152 http://ftpmaster.internal/ubuntu impish/main amd64 libmodule-runtime-perl all 0.016-1 [16.2 kB] Get:153 http://ftpmaster.internal/ubuntu impish/main amd64 libtry-tiny-perl all 0.30-1 [20.5 kB] Get:154 http://ftpmaster.internal/ubuntu impish/main amd64 libmodule-implementation-perl all 0.09-1.1 [11.6 kB] Get:155 http://ftpmaster.internal/ubuntu impish/main amd64 libpackage-stash-perl all 0.39-1 [19.1 kB] Get:156 http://ftpmaster.internal/ubuntu impish/universe amd64 libclass-load-perl all 0.25-1 [13.5 kB] Get:157 http://ftpmaster.internal/ubuntu impish/universe amd64 libclass-load-xs-perl amd64 0.10-1build6 [13.5 kB] Get:158 http://ftpmaster.internal/ubuntu impish/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [6784 B] Get:159 http://ftpmaster.internal/ubuntu impish/universe amd64 libdevel-globaldestruction-perl all 0.14-1.1 [6916 B] Get:160 http://ftpmaster.internal/ubuntu impish/universe amd64 libalgorithm-c3-perl all 0.11-1 [11.0 kB] Get:161 http://ftpmaster.internal/ubuntu impish/universe amd64 libclass-c3-perl all 0.35-1 [19.0 kB] Get:162 http://ftpmaster.internal/ubuntu impish/universe amd64 libmro-compat-perl all 0.13-1 [11.2 kB] Get:163 http://ftpmaster.internal/ubuntu impish/main amd64 libsub-identify-perl amd64 0.14-1build3 [10.6 kB] Get:164 http://ftpmaster.internal/ubuntu impish/universe amd64 libdevel-overloadinfo-perl all 0.005-1 [6780 B] Get:165 http://ftpmaster.internal/ubuntu impish/main amd64 libdevel-stacktrace-perl all 2.0400-1 [22.7 kB] Get:166 http://ftpmaster.internal/ubuntu impish/main amd64 libsub-exporter-perl all 0.987-1 [44.9 kB] Get:167 http://ftpmaster.internal/ubuntu impish/universe amd64 libeval-closure-perl all 0.14-1 [10.3 kB] Get:168 http://ftpmaster.internal/ubuntu impish/universe amd64 libdist-checkconflicts-perl all 0.11-1.1 [9632 B] Get:169 http://ftpmaster.internal/ubuntu impish/universe amd64 libmodule-runtime-conflicts-perl all 0.003-1.1 [6836 B] Get:170 http://ftpmaster.internal/ubuntu impish/main amd64 libsub-name-perl amd64 0.26-1build1 [11.5 kB] Get:171 http://ftpmaster.internal/ubuntu impish/universe amd64 libpackage-deprecationmanager-perl all 0.17-1.1 [15.5 kB] Get:172 http://ftpmaster.internal/ubuntu impish/main amd64 libpackage-stash-xs-perl amd64 0.29-1build3 [18.4 kB] Get:173 http://ftpmaster.internal/ubuntu impish/universe amd64 libmoose-perl amd64 2.2014-2 [743 kB] Get:174 http://ftpmaster.internal/ubuntu impish/main amd64 libvariable-magic-perl amd64 0.62-1build3 [34.2 kB] Get:175 http://ftpmaster.internal/ubuntu impish/main amd64 libb-hooks-endofscope-perl all 0.24-1.1 [17.0 kB] Get:176 http://ftpmaster.internal/ubuntu impish/main amd64 libnamespace-clean-perl all 0.27-1 [13.6 kB] Get:177 http://ftpmaster.internal/ubuntu impish/main amd64 libcurl3-gnutls amd64 7.74.0-1.2ubuntu2 [247 kB] Get:178 http://ftpmaster.internal/ubuntu impish/universe amd64 libwww-curl-perl amd64 4.17-7build1 [50.9 kB] Get:179 http://ftpmaster.internal/ubuntu impish/universe amd64 libwww-curl-simple-perl all 0.100191-2 [10.9 kB] Get:180 http://ftpmaster.internal/ubuntu impish/universe amd64 dh-r all 20210218ubuntu1 [36.4 kB] Get:181 http://ftpmaster.internal/ubuntu impish/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-2 [117 kB] Get:182 http://ftpmaster.internal/ubuntu impish/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] Get:183 http://ftpmaster.internal/ubuntu impish/main amd64 libboost1.74-dev amd64 1.74.0-8ubuntu2 [9509 kB] Get:184 http://ftpmaster.internal/ubuntu impish/main amd64 libboost-dev amd64 1.74.0.3ubuntu5 [3580 B] Get:185 http://ftpmaster.internal/ubuntu impish/universe amd64 libjs-bootstrap all 3.4.1+dfsg-2 [124 kB] Get:186 http://ftpmaster.internal/ubuntu impish/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-1 [367 kB] Get:187 http://ftpmaster.internal/ubuntu impish/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [314 kB] Get:188 http://ftpmaster.internal/ubuntu impish/universe amd64 libjs-jquery-datatables all 1.10.21+dfsg-2 [137 kB] Get:189 http://ftpmaster.internal/ubuntu impish/main amd64 libc-ares2 amd64 1.17.1-1 [42.0 kB] Get:190 http://ftpmaster.internal/ubuntu impish-proposed/universe amd64 libnode72 amd64 12.21.0~dfsg-4ubuntu1 [8506 kB] Get:191 http://ftpmaster.internal/ubuntu impish/universe amd64 r-cran-littler amd64 0.3.12-1 [83.0 kB] Get:192 http://ftpmaster.internal/ubuntu impish/universe amd64 littler all 0.3.12-1 [2380 B] Get:193 http://ftpmaster.internal/ubuntu impish-proposed/universe amd64 nodejs amd64 12.21.0~dfsg-4ubuntu1 [119 kB] Get:194 http://ftpmaster.internal/ubuntu impish/universe amd64 node-highlight.js all 9.18.5+dfsg1-1 [304 kB] Get:195 http://ftpmaster.internal/ubuntu impish/universe amd64 r-bioc-biocgenerics all 0.36.0-1 [646 kB] Get:196 http://ftpmaster.internal/ubuntu impish/universe amd64 r-bioc-biobase amd64 2.50.0-1build1 [2229 kB] Get:197 http://ftpmaster.internal/ubuntu impish/universe amd64 r-bioc-s4vectors amd64 0.28.1-1 [2026 kB] Get:198 http://ftpmaster.internal/ubuntu impish/universe amd64 r-bioc-iranges amd64 2.24.1-1 [2200 kB] Get:199 http://ftpmaster.internal/ubuntu impish/universe amd64 r-cran-dbi all 1.1.1-1 [617 kB] Get:200 http://ftpmaster.internal/ubuntu impish/universe amd64 r-cran-bit amd64 4.0.4+dfsg-1 [423 kB] Get:201 http://ftpmaster.internal/ubuntu impish/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] Get:202 http://ftpmaster.internal/ubuntu impish/universe amd64 r-cran-rlang amd64 0.4.10-1ubuntu1 [1169 kB] Get:203 http://ftpmaster.internal/ubuntu impish/universe amd64 r-cran-ellipsis amd64 0.3.1-1build1 [31.8 kB] Get:204 http://ftpmaster.internal/ubuntu impish/universe amd64 r-cran-digest amd64 0.6.27-1 [179 kB] Get:205 http://ftpmaster.internal/ubuntu impish/universe amd64 r-cran-glue amd64 1.4.2-1 [134 kB] Get:206 http://ftpmaster.internal/ubuntu impish/universe amd64 r-cran-vctrs amd64 0.3.6-1 [1051 kB] Get:207 http://ftpmaster.internal/ubuntu impish/universe amd64 r-cran-blob all 1.2.1-2build1 [49.9 kB] Get:208 http://ftpmaster.internal/ubuntu impish/universe amd64 r-cran-fastmap amd64 1.1.0-1 [64.8 kB] Get:209 http://ftpmaster.internal/ubuntu impish/universe amd64 r-cran-cachem amd64 1.0.3-1 [61.6 kB] Get:210 http://ftpmaster.internal/ubuntu impish/universe amd64 r-cran-memoise all 2.0.0-1 [52.8 kB] Get:211 http://ftpmaster.internal/ubuntu impish/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] Get:212 http://ftpmaster.internal/ubuntu impish/universe amd64 r-cran-pkgkitten all 0.2.1-1 [24.8 kB] Get:213 http://ftpmaster.internal/ubuntu impish/universe amd64 r-cran-rcpp amd64 1.0.6-1 [1944 kB] Get:214 http://ftpmaster.internal/ubuntu impish/universe amd64 r-cran-bh all 1.74.0-1 [5240 B] Get:215 http://ftpmaster.internal/ubuntu impish/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] Get:216 http://ftpmaster.internal/ubuntu impish/universe amd64 r-cran-rsqlite amd64 2.2.3-1 [1036 kB] Get:217 http://ftpmaster.internal/ubuntu impish/universe amd64 r-bioc-annotationdbi all 1.52.0-1 [4702 kB] Get:218 http://ftpmaster.internal/ubuntu impish/universe amd64 r-cran-xml amd64 3.99-0.6-1 [1698 kB] Get:219 http://ftpmaster.internal/ubuntu impish/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] Get:220 http://ftpmaster.internal/ubuntu impish/universe amd64 r-cran-curl amd64 4.3+dfsg-1build1 [152 kB] Get:221 http://ftpmaster.internal/ubuntu impish/universe amd64 r-cran-jsonlite amd64 1.7.2+dfsg-1 [447 kB] Get:222 http://ftpmaster.internal/ubuntu impish/universe amd64 r-cran-mime amd64 0.9-1build1 [35.7 kB] Get:223 http://ftpmaster.internal/ubuntu impish/universe amd64 r-cran-sys amd64 3.4-1 [43.0 kB] Get:224 http://ftpmaster.internal/ubuntu impish/universe amd64 r-cran-askpass amd64 1.1-2 [22.4 kB] Get:225 http://ftpmaster.internal/ubuntu impish/universe amd64 r-cran-openssl amd64 1.4.3+dfsg-2 [375 kB] Get:226 http://ftpmaster.internal/ubuntu impish/universe amd64 r-cran-r6 all 2.5.0-1 [98.5 kB] Get:227 http://ftpmaster.internal/ubuntu impish/universe amd64 r-cran-httr all 1.4.2-1 [478 kB] Get:228 http://ftpmaster.internal/ubuntu impish/universe amd64 r-bioc-annotate all 1.68.0+dfsg-1 [2103 kB] Get:229 http://ftpmaster.internal/ubuntu impish/universe amd64 r-cran-formatr all 1.7-2build1 [147 kB] Get:230 http://ftpmaster.internal/ubuntu impish/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] Get:231 http://ftpmaster.internal/ubuntu impish/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] Get:232 http://ftpmaster.internal/ubuntu impish/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] Get:233 http://ftpmaster.internal/ubuntu impish/universe amd64 r-cran-snow all 1:0.4.3-2 [109 kB] Get:234 http://ftpmaster.internal/ubuntu impish/universe amd64 r-bioc-biocparallel amd64 1.24.1-1 [1142 kB] Get:235 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r-cran-rcolorbrewer all 1.1-2-3 [54.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 214 MB in 4s (49.4 MB/s) Selecting previously unselected package bsdextrautils. 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Setting up libssh-4:amd64 (0.9.5-1) ... Setting up libgfortran5:amd64 (11.1.0-3ubuntu1) ... Setting up libroken18-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up liblzma-dev:amd64 (5.2.5-2) ... Setting up libsub-name-perl (0.26-1build1) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2ubuntu6) ... Setting up libmd0:amd64 (1.0.3-3build1) ... Setting up libjs-highlight.js (9.18.5+dfsg1-1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libncurses5-dev:amd64 (6.2+20201114-2build1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libharfbuzz0b:amd64 (2.7.4-1ubuntu1) ... Setting up libthai-data (0.1.28-4) ... Setting up libgfortran-10-dev:amd64 (10.3.0-4ubuntu1) ... Setting up libdevel-globaldestruction-perl (0.14-1.1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libboost-dev:amd64 (1.74.0.3ubuntu5) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up libbsd0:amd64 (0.11.3-1ubuntu2) ... Setting up node-normalize.css (8.0.1-3) ... Setting up libelf1:amd64 (0.185-1) ... Setting up libicu-dev:amd64 (67.1-6ubuntu2) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7) ... Setting up xdg-utils (1.1.3-2ubuntu2) ... Setting up liburi-perl (5.08-1) ... Setting up libblas-dev:amd64 (3.9.0-3ubuntu2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up dctrl-tools (2.24-3) ... Setting up libjs-bootstrap (3.4.1+dfsg-2) ... Setting up libheimbase1-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up libbz2-dev:amd64 (1.0.8-4ubuntu3) ... Setting up libjpeg8:amd64 (8c-2ubuntu8) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up r-cran-bh (1.74.0-1) ... Setting up libpaper1:amd64 (1.1.28) ... Creating config file /etc/papersize with new version Setting up libice6:amd64 (2:1.0.10-1) ... Setting up libhttp-date-perl (6.05-1) ... Setting up libdw1:amd64 (0.185-1) ... Setting up libjpeg-turbo8-dev:amd64 (2.0.6-0ubuntu2) ... Setting up libxdmcp6:amd64 (1:1.1.3-0ubuntu3) ... Setting up liblapack3:amd64 (3.9.0-3ubuntu2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.14-3ubuntu1) ... Setting up gettext (0.21-3ubuntu2) ... Setting up libpcre2-dev:amd64 (10.36-2ubuntu5) ... Setting up libtool (2.4.6-15) ... Setting up libxcb-render0:amd64 (1.14-3ubuntu1) ... Setting up libpcre3-dev:amd64 (2:8.39-13build3) ... Setting up fontconfig-config (2.13.1-4.2ubuntu3) ... Setting up libasn1-8-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up libpng-dev:amd64 (1.6.37-3build3) ... Setting up m4 (1.4.18-5) ... Setting up libxcb-shm0:amd64 (1.14-3ubuntu1) ... Setting up libpaper-utils (1.1.28) ... Setting up libclass-c3-perl (0.35-1) ... Setting up nodejs (12.21.0~dfsg-4ubuntu1) ... update-alternatives: using /usr/bin/nodejs to provide /usr/bin/js (js) in auto mode Setting up libdevel-callchecker-perl (0.008-1ubuntu2) ... Setting up libhcrypto4-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up libjs-jquery-datatables (1.10.21+dfsg-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libthai0:amd64 (0.1.28-4) ... Setting up libwind0-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up liblapack-dev:amd64 (3.9.0-3ubuntu2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up gfortran-10 (10.3.0-4ubuntu1) ... Setting up libdata-optlist-perl (0.110-1.1) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-6) ... Setting up debugedit (1:0.2+20210520-0ubuntu1) ... Setting up libx11-6:amd64 (2:1.7.1-1) ... Setting up libtiff5:amd64 (4.3.0-1) ... Setting up libfontconfig1:amd64 (2.13.1-4.2ubuntu3) ... Setting up libmro-compat-perl (0.13-1) ... Setting up libjpeg8-dev:amd64 (8c-2ubuntu8) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libxmuu1:amd64 (2:1.1.3-0ubuntu1) ... Setting up libsub-exporter-perl (0.987-1) ... Setting up libhttp-message-perl (6.29-1) ... Setting up libeval-closure-perl (0.14-1) ... Setting up automake (1:1.16.3-2ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up node-highlight.js (9.18.5+dfsg1-1) ... Setting up fontconfig (2.13.1-4.2ubuntu3) ... Regenerating fonts cache... done. Setting up libxrender1:amd64 (1:0.9.10-1build2) ... Setting up libhx509-5-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libparams-classify-perl (0.015-1build3) ... Setting up libpango-1.0-0:amd64 (1.48.2-1build2) ... Setting up libjpeg-dev:amd64 (8c-2ubuntu8) ... Setting up libxext6:amd64 (2:1.3.4-0ubuntu3) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up gfortran (4:10.3.0-1ubuntu3) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:amd64 (1.16.0-5ubuntu1) ... Setting up dh-autoreconf (20) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libdist-checkconflicts-perl (0.11-1.1) ... Setting up libxt6:amd64 (1:1.2.0-1) ... Setting up xauth (1:1.1-1) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libpangoft2-1.0-0:amd64 (1.48.2-1build2) ... Setting up libpangocairo-1.0-0:amd64 (1.48.2-1build2) ... Setting up libkrb5-26-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up libxft2:amd64 (2.3.3-0ubuntu3) ... Setting up libmodule-implementation-perl (0.09-1.1) ... Setting up libpackage-stash-perl (0.39-1) ... Setting up libtk8.6:amd64 (8.6.11-2) ... Setting up debhelper (13.3.4ubuntu1) ... Setting up libmodule-runtime-conflicts-perl (0.003-1.1) ... Setting up libheimntlm0-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up libclass-load-perl (0.25-1) ... Setting up libgssapi3-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up libpackage-deprecationmanager-perl (0.17-1.1) ... Setting up libdevel-overloadinfo-perl (0.005-1) ... Setting up libclass-load-xs-perl (0.10-1build6) ... Setting up libb-hooks-endofscope-perl (0.24-1.1) ... Setting up libmoose-perl (2.2014-2) ... Setting up libldap-2.4-2:amd64 (2.4.57+dfsg-2ubuntu1) ... Setting up libcurl3-gnutls:amd64 (7.74.0-1.2ubuntu2) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up libcurl4:amd64 (7.74.0-1.2ubuntu2) ... Setting up libwww-curl-perl (4.17-7build1) ... Setting up r-base-core (4.0.4-1build1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.4.0-1) ... Setting up r-cran-futile.options (1.0.1-3build1) ... Setting up r-cran-lattice (0.20-41-1build1) ... Setting up r-cran-nlme (3.1.152-1) ... Setting up r-cran-formatr (1.7-2build1) ... Setting up r-cran-xml (3.99-0.6-1) ... Setting up r-cran-locfit (1.5-9.4-2build1) ... Setting up r-cran-r6 (2.5.0-1) ... Setting up r-cran-pkgkitten (0.2.1-1) ... Setting up r-cran-magrittr (2.0.1-1) ... Setting up r-bioc-genomeinfodbdata (1.2.4-1) ... Setting up r-cran-littler (0.3.12-1) ... Setting up r-cran-rcpp (1.0.6-1) ... Setting up r-cran-curl (4.3+dfsg-1build1) ... Setting up r-bioc-biocgenerics (0.36.0-1) ... Setting up r-cran-rlang (0.4.10-1ubuntu1) ... Setting up r-cran-matrixstats (0.58.0-3) ... Setting up r-base-dev (4.0.4-1build1) ... Setting up littler (0.3.12-1) ... Setting up libwww-curl-simple-perl (0.100191-2) ... Setting up r-bioc-matrixgenerics (1.2.1-4) ... Setting up r-cran-xfun (0.20-1) ... Setting up r-cran-sys (3.4-1) ... Setting up r-cran-plogr (0.2.0-3build1) ... Setting up r-cran-mime (0.9-1build1) ... Setting up r-cran-digest (0.6.27-1) ... Setting up r-cran-yaml (2.2.1-1build1) ... Setting up r-cran-lambda.r (1.2.4-2build1) ... Setting up r-cran-evaluate (0.14-2build1) ... Setting up r-cran-dbi (1.1.1-1) ... Setting up r-cran-highr (0.8+dfsg-2build1) ... Setting up r-cran-snow (1:0.4.3-2) ... Setting up r-cran-glue (1.4.2-1) ... Setting up r-cran-bit (4.0.4+dfsg-1) ... Setting up r-cran-xtable (1:1.8-4-2) ... Setting up r-cran-bitops (1.0-6-5) ... Setting up r-cran-bit64 (4.0.5-1) ... Setting up r-bioc-zlibbioc (1.36.0+dfsg-1) ... Setting up r-cran-askpass (1.1-2) ... Setting up r-cran-fastmap (1.1.0-1) ... Setting up r-bioc-biobase (2.50.0-1build1) ... Setting up r-cran-jsonlite (1.7.2+dfsg-1) ... Setting up r-cran-pkgconfig (2.0.3-2build1) ... Setting up r-cran-stringi (1.5.3-1) ... Setting up r-cran-markdown (1.1+dfsg-1build1) ... Setting up r-cran-rcolorbrewer (1.1-2-3) ... Setting up r-bioc-s4vectors (0.28.1-1) ... Setting up r-cran-futile.logger (1.4.3-4build1) ... Setting up r-bioc-limma (3.46.0+dfsg-1) ... Setting up r-cran-matrix (1.3-2+really1.3-2-0ubuntu1) ... Setting up r-cran-mgcv (1.8-34-1) ... Setting up r-cran-cachem (1.0.3-1) ... Setting up r-bioc-iranges (2.24.1-1) ... Setting up dh-r (20210218ubuntu1) ... Setting up r-cran-rcurl (1.98-1.2-1build1) ... Setting up r-bioc-delayedarray (0.16.1+dfsg-1) ... Setting up r-cran-ellipsis (0.3.1-1build1) ... Setting up r-cran-openssl (1.4.3+dfsg-2) ... Setting up r-cran-stringr (1.4.0-2build1) ... Setting up r-bioc-biocparallel (1.24.1-1) ... Setting up r-bioc-edger (3.32.1+dfsg-1) ... Setting up r-bioc-rhtslib (1.22.0+dfsg-1) ... Setting up r-cran-survival (3.2-10-1) ... Setting up r-bioc-genomeinfodb (1.26.2-2) ... Setting up r-cran-httr (1.4.2-1) ... Setting up r-cran-memoise (2.0.0-1) ... Setting up r-bioc-xvector (0.30.0-1) ... Setting up r-cran-knitr (1.31+dfsg-1) ... Setting up r-cran-vctrs (0.3.6-1) ... Setting up r-bioc-genomicranges (1.42.0+dfsg-1) ... Setting up r-bioc-biostrings (2.58.0-1) ... Setting up r-cran-blob (1.2.1-2build1) ... Setting up r-bioc-rsamtools (2.6.0-1) ... Setting up r-cran-rsqlite (2.2.3-1) ... Setting up r-bioc-summarizedexperiment (1.20.0+dfsg-1) ... Setting up r-bioc-annotationdbi (1.52.0-1) ... Setting up r-bioc-annotate (1.68.0+dfsg-1) ... Setting up r-bioc-genefilter (1.72.1-1) ... Setting up r-bioc-genomicalignments (1.26.0-1) ... Setting up r-bioc-rtracklayer (1.50.0-1) ... Setting up r-bioc-sva (3.38.0-1) ... Setting up sbuild-build-depends-r-bioc-ballgown-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.33-0ubuntu8) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-144-generic amd64 (x86_64) Toolchain package versions: binutils_2.36.50.20210603-0ubuntu1 dpkg-dev_1.20.9ubuntu1 g++-10_10.3.0-4ubuntu1 gcc-10_10.3.0-4ubuntu1 libc6-dev_2.33-0ubuntu8 libstdc++-10-dev_10.3.0-4ubuntu1 libstdc++6_11.1.0-3ubuntu1 linux-libc-dev_5.11.0-20.21+21.10.1 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1build1 apt_2.3.6 autoconf_2.69-14 automake_1:1.16.3-2ubuntu1 autopoint_0.21-3ubuntu2 autotools-dev_20180224.1+nmu1 base-files_11.1ubuntu3 base-passwd_3.5.50 bash_5.1-3ubuntu1 binutils_2.36.50.20210603-0ubuntu1 binutils-common_2.36.50.20210603-0ubuntu1 binutils-x86-64-linux-gnu_2.36.50.20210603-0ubuntu1 bsdextrautils_2.36.1-7ubuntu2 bsdutils_1:2.36.1-7ubuntu2 build-essential_12.9ubuntu1 bzip2_1.0.8-4ubuntu3 ca-certificates_20210119build1 coreutils_8.32-4ubuntu2 cpp_4:10.3.0-1ubuntu3 cpp-10_10.3.0-4ubuntu1 dash_0.5.11+git20210120+802ebd4-1 dctrl-tools_2.24-3 debconf_1.5.77 debhelper_13.3.4ubuntu1 debianutils_4.11.2 debugedit_1:0.2+20210520-0ubuntu1 dh-autoreconf_20 dh-r_20210218ubuntu1 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5ubuntu1 dpkg_1.20.9ubuntu1 dpkg-dev_1.20.9ubuntu1 dwz_0.14-1 e2fsprogs_1.46.2-1ubuntu2 fakeroot_1.25.3-1.1ubuntu2 file_1:5.39-3 findutils_4.8.0-1ubuntu1 fontconfig_2.13.1-4.2ubuntu3 fontconfig-config_2.13.1-4.2ubuntu3 fonts-dejavu-core_2.37-2build1 fonts-glyphicons-halflings_1.009~3.4.1+dfsg-2 fonts-mathjax_2.7.9+dfsg-1 g++_4:10.3.0-1ubuntu3 g++-10_10.3.0-4ubuntu1 gcc_4:10.3.0-1ubuntu3 gcc-10_10.3.0-4ubuntu1 gcc-10-base_10.3.0-4ubuntu1 gcc-11-base_11.1.0-3ubuntu1 gettext_0.21-3ubuntu2 gettext-base_0.21-3ubuntu2 gfortran_4:10.3.0-1ubuntu3 gfortran-10_10.3.0-4ubuntu1 gpg_2.2.20-1ubuntu3 gpg-agent_2.2.20-1ubuntu3 gpgconf_2.2.20-1ubuntu3 gpgv_2.2.20-1ubuntu3 grep_3.6-1 groff-base_1.22.4-6 gzip_1.10-4ubuntu1 hostname_3.23 icu-devtools_67.1-6ubuntu2 init_1.60 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10ubuntu1 libalgorithm-c3-perl_0.11-1 libapparmor1_3.0.0-0ubuntu8 libapt-pkg6.0_2.3.6 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.2build21.04.0 libasan6_11.1.0-3ubuntu1 libasn1-8-heimdal_7.7.0+dfsg-2 libassuan0_2.5.4-1ubuntu1 libatomic1_11.1.0-3ubuntu1 libattr1_1:2.4.48-6build1 libaudit-common_1:3.0-2ubuntu1 libaudit1_1:3.0-2ubuntu1 libb-hooks-endofscope-perl_0.24-1.1 libb-hooks-op-check-perl_0.22-1build3 libbinutils_2.36.50.20210603-0ubuntu1 libblas-dev_3.9.0-3ubuntu2 libblas3_3.9.0-3ubuntu2 libblkid1_2.36.1-7ubuntu2 libboost-dev_1.74.0.3ubuntu5 libboost1.74-dev_1.74.0-8ubuntu2 libbrotli1_1.0.9-2build2 libbsd0_0.11.3-1ubuntu2 libbz2-1.0_1.0.8-4ubuntu3 libbz2-dev_1.0.8-4ubuntu3 libc-ares2_1.17.1-1 libc-bin_2.33-0ubuntu8 libc-dev-bin_2.33-0ubuntu8 libc6_2.33-0ubuntu8 libc6-dev_2.33-0ubuntu8 libcairo2_1.16.0-5ubuntu1 libcap-ng0_0.7.9-2.2build1 libcap2_1:2.44-1build1 libcc1-0_11.1.0-3ubuntu1 libclass-c3-perl_0.35-1 libclass-load-perl_0.25-1 libclass-load-xs-perl_0.10-1build6 libcom-err2_1.46.2-1ubuntu2 libcrypt-dev_1:4.4.18-4ubuntu1 libcrypt1_1:4.4.18-4ubuntu1 libcryptsetup12_2:2.3.4-1ubuntu3 libctf-nobfd0_2.36.50.20210603-0ubuntu1 libctf0_2.36.50.20210603-0ubuntu1 libcurl3-gnutls_7.74.0-1.2ubuntu2 libcurl4_7.74.0-1.2ubuntu2 libdata-optlist-perl_0.110-1.1 libdatrie1_0.2.13-1ubuntu2 libdb5.3_5.3.28+dfsg1-0.8ubuntu1 libdebconfclient0_0.256ubuntu3 libdebhelper-perl_13.3.4ubuntu1 libdeflate0_1.7-1ubuntu1 libdevel-callchecker-perl_0.008-1ubuntu2 libdevel-globaldestruction-perl_0.14-1.1 libdevel-overloadinfo-perl_0.005-1 libdevel-stacktrace-perl_2.0400-1 libdevmapper1.02.1_2:1.02.175-2.1ubuntu1 libdist-checkconflicts-perl_0.11-1.1 libdpkg-perl_1.20.9ubuntu1 libdw1_0.185-1 libdynaloader-functions-perl_0.003-1.1 libelf1_0.185-1 libencode-locale-perl_1.05-1.1 libeval-closure-perl_0.14-1 libexpat1_2.3.0-1 libext2fs2_1.46.2-1ubuntu2 libfakeroot_1.25.3-1.1ubuntu2 libffi8ubuntu1_3.4~20200819gead65ca871-0ubuntu5 libfile-stripnondeterminism-perl_1.12.0-1 libfile-which-perl_1.23-1 libfontconfig1_2.13.1-4.2ubuntu3 libfreetype6_2.10.4+dfsg-1build1 libfribidi0_1.0.8-2ubuntu1 libgcc-10-dev_10.3.0-4ubuntu1 libgcc-s1_11.1.0-3ubuntu1 libgcrypt20_1.8.7-5ubuntu1 libgdbm-compat4_1.19-2 libgdbm6_1.19-2 libgfortran-10-dev_10.3.0-4ubuntu1 libgfortran5_11.1.0-3ubuntu1 libglib2.0-0_2.68.1-2 libgmp10_2:6.2.1+dfsg-1ubuntu2 libgnutls30_3.7.1-4ubuntu1 libgomp1_11.1.0-3ubuntu1 libgpg-error0_1.38-2build1 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.18.3-5 libgssapi3-heimdal_7.7.0+dfsg-2 libharfbuzz0b_2.7.4-1ubuntu1 libhcrypto4-heimdal_7.7.0+dfsg-2 libheimbase1-heimdal_7.7.0+dfsg-2 libheimntlm0-heimdal_7.7.0+dfsg-2 libhogweed6_3.7.3-1 libhttp-date-perl_6.05-1 libhttp-message-perl_6.29-1 libhx509-5-heimdal_7.7.0+dfsg-2 libice6_2:1.0.10-1 libicu-dev_67.1-6ubuntu2 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r-bioc-annotate_1.68.0+dfsg-1 r-bioc-annotationdbi_1.52.0-1 r-bioc-biobase_2.50.0-1build1 r-bioc-biocgenerics_0.36.0-1 r-bioc-biocparallel_1.24.1-1 r-bioc-biostrings_2.58.0-1 r-bioc-delayedarray_0.16.1+dfsg-1 r-bioc-edger_3.32.1+dfsg-1 r-bioc-genefilter_1.72.1-1 r-bioc-genomeinfodb_1.26.2-2 r-bioc-genomeinfodbdata_1.2.4-1 r-bioc-genomicalignments_1.26.0-1 r-bioc-genomicranges_1.42.0+dfsg-1 r-bioc-iranges_2.24.1-1 r-bioc-limma_3.46.0+dfsg-1 r-bioc-matrixgenerics_1.2.1-4 r-bioc-rhtslib_1.22.0+dfsg-1 r-bioc-rsamtools_2.6.0-1 r-bioc-rtracklayer_1.50.0-1 r-bioc-s4vectors_0.28.1-1 r-bioc-summarizedexperiment_1.20.0+dfsg-1 r-bioc-sva_3.38.0-1 r-bioc-xvector_0.30.0-1 r-bioc-zlibbioc_1.36.0+dfsg-1 r-cran-askpass_1.1-2 r-cran-bh_1.74.0-1 r-cran-bit_4.0.4+dfsg-1 r-cran-bit64_4.0.5-1 r-cran-bitops_1.0-6-5 r-cran-blob_1.2.1-2build1 r-cran-cachem_1.0.3-1 r-cran-crayon_1.4.0-1 r-cran-curl_4.3+dfsg-1build1 r-cran-dbi_1.1.1-1 r-cran-digest_0.6.27-1 r-cran-ellipsis_0.3.1-1build1 r-cran-evaluate_0.14-2build1 r-cran-fastmap_1.1.0-1 r-cran-formatr_1.7-2build1 r-cran-futile.logger_1.4.3-4build1 r-cran-futile.options_1.0.1-3build1 r-cran-glue_1.4.2-1 r-cran-highr_0.8+dfsg-2build1 r-cran-httr_1.4.2-1 r-cran-jsonlite_1.7.2+dfsg-1 r-cran-knitr_1.31+dfsg-1 r-cran-lambda.r_1.2.4-2build1 r-cran-lattice_0.20-41-1build1 r-cran-littler_0.3.12-1 r-cran-locfit_1.5-9.4-2build1 r-cran-magrittr_2.0.1-1 r-cran-markdown_1.1+dfsg-1build1 r-cran-matrix_1.3-2+really1.3-2-0ubuntu1 r-cran-matrixstats_0.58.0-3 r-cran-memoise_2.0.0-1 r-cran-mgcv_1.8-34-1 r-cran-mime_0.9-1build1 r-cran-nlme_3.1.152-1 r-cran-openssl_1.4.3+dfsg-2 r-cran-pkgconfig_2.0.3-2build1 r-cran-pkgkitten_0.2.1-1 r-cran-plogr_0.2.0-3build1 r-cran-r6_2.5.0-1 r-cran-rcolorbrewer_1.1-2-3 r-cran-rcpp_1.0.6-1 r-cran-rcurl_1.98-1.2-1build1 r-cran-rlang_0.4.10-1ubuntu1 r-cran-rsqlite_2.2.3-1 r-cran-snow_1:0.4.3-2 r-cran-stringi_1.5.3-1 r-cran-stringr_1.4.0-2build1 r-cran-survival_3.2-10-1 r-cran-sys_3.4-1 r-cran-vctrs_0.3.6-1 r-cran-xfun_0.20-1 r-cran-xml_3.99-0.6-1 r-cran-xtable_1:1.8-4-2 r-cran-yaml_2.2.1-1build1 readline-common_8.1-2 rpcsvc-proto_1.4.2-0ubuntu4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-ballgown-dummy_0.invalid.0 sed_4.7-1ubuntu1 sensible-utils_0.0.14 systemd_248.3-1ubuntu1 systemd-sysv_248.3-1ubuntu1 systemd-timesyncd_248.3-1ubuntu1 sysvinit-utils_2.96-7ubuntu1 tar_1.34+dfsg-1build1 tzdata_2021a-1ubuntu1 ubuntu-keyring_2021.03.26 ucf_3.0043 unzip_6.0-26ubuntu1 usrmerge_25ubuntu1 util-linux_2.36.1-7ubuntu2 x11-common_1:7.7+22ubuntu1 xauth_1:1.1-1 xdg-utils_1.1.3-2ubuntu2 xz-utils_5.2.5-2 zip_3.0-12 zlib1g_1:1.2.11.dfsg-2ubuntu6 zlib1g-dev_1:1.2.11.dfsg-2ubuntu6 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon Jun 14 14:28:58 2021 UTC gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-bioc-ballgown_2.22.0+dfsg-2.dsc dpkg-source: info: extracting r-bioc-ballgown in /<>/r-bioc-ballgown-2.22.0+dfsg dpkg-source: info: unpacking r-bioc-ballgown_2.22.0+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-ballgown_2.22.0+dfsg-2.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-21694102 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-21694102 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-21694102 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package r-bioc-ballgown dpkg-buildpackage: info: source version 2.22.0+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R debian/rules execute_after_dh_auto_build make[1]: Entering directory '/<>/r-bioc-ballgown-2.22.0+dfsg' cd inst/doc && Rscript -e "require(knitr); require(markdown); knit('ballgown.Rmd', 'ballgown.md'); markdownToHTML('ballgown.md', 'ballgown.html', options=c('use_xhtml', 'base64_images'));" && rm -f ballgown.md Loading required package: knitr Loading required package: markdown processing file: ballgown.Rmd | | | 0% | |.. | 2% ordinary text without R code | |... | 5% label: loadmethods (with options) List of 3 $ echo : logi FALSE $ message: logi FALSE $ warning: logi FALSE | |..... | 7% ordinary text without R code | |....... | 9% label: installme (with options) List of 1 $ eval: logi FALSE | |........ | 12% ordinary text without R code | |.......... | 14% label: makebgobj (with options) List of 1 $ message: logi FALSE | |........... | 16% ordinary text without R code | |............. | 19% label: struct | |............... | 21% ordinary text without R code | |................ | 23% label: getexpr | |.................. | 26% ordinary text without R code | |.................... | 28% label: pData | |..................... | 30% ordinary text without R code | |....................... | 33% label: indexex | |........................ | 35% ordinary text without R code | |.......................... | 37% label: dirs | |............................ 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|.............................................. | 65% label: stattest | |............................................... | 67% ordinary text without R code | |................................................. | 70% label: stattest_time | |.................................................. | 72% ordinary text without R code | |.................................................... | 74% label: stattest_adjust | |...................................................... | 77% ordinary text without R code | |....................................................... | 79% label: customMod | |......................................................... | 81% ordinary text without R code | |........................................................... | 84% label: cluster | |............................................................ | 86% ordinary text without R code | |.............................................................. | 88% label: clusterviz (with options) List of 3 $ fig.height: num 8 $ fig.width : num 8 $ fig.cap : chr "" | |............................................................... | 91% ordinary text without R code | |................................................................. | 93% label: collapse | |................................................................... | 95% ordinary text without R code | |.................................................................... | 98% label: sessioninfo (with options) List of 1 $ results: chr "markup" | |......................................................................| 100% ordinary text without R code output file: ballgown.md [1] "ballgown.md" make[1]: Leaving directory '/<>/r-bioc-ballgown-2.22.0+dfsg' dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install -O--buildsystem=R I: R packages needed for DEP8: testthat I: R Package: ballgown Version: 2.22.0 I: Building using R version 4.0.4-1build1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Mon, 14 Jun 2021 19:55:05 +0530 mkdir -p /<>/r-bioc-ballgown-2.22.0\+dfsg/debian/r-bioc-ballgown/usr/lib/R/site-library R CMD INSTALL -l /<>/r-bioc-ballgown-2.22.0\+dfsg/debian/r-bioc-ballgown/usr/lib/R/site-library --clean . "--built-timestamp='Mon, 14 Jun 2021 19:55:05 +0530'" * installing *source* package ‘ballgown’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘structure’ in package ‘ballgown’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ballgown) W: Ignoring specified R dependency: R (>= 3.1.1) I: Using r-cran-testthat for Recommends:testthat I: Using r-cran-knitr for Suggests:knitr I: Using r-bioc-genomicranges for Imports:GenomicRanges (>= 1.17.25) I: Using r-bioc-iranges for Imports:IRanges (>= 1.99.22) I: Using r-bioc-s4vectors for Imports:S4Vectors (>= 0.9.39) I: Using r-cran-rcolorbrewer for Imports:RColorBrewer I: Using r-bioc-sva for Imports:sva I: Using r-bioc-limma for Imports:limma I: Using r-bioc-rtracklayer for Imports:rtracklayer (>= 1.29.25) I: Using r-bioc-biobase for Imports:Biobase (>= 2.25.0) I: Using r-bioc-genomeinfodb for Imports:GenomeInfoDb I: BioConductor API version: r-api-bioc-3.12 I: Use r-bioc-ballgown as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R debian/rules override_dh_fixperms make[1]: Entering directory '/<>/r-bioc-ballgown-2.22.0+dfsg' dh_fixperms find debian -type f \( -name '*.ctab' -o -name '*.Rmd' -o -name '*.gz' \) | xargs chmod -x make[1]: Leaving directory '/<>/r-bioc-ballgown-2.22.0+dfsg' dh_missing -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R INFO: pkgstriptranslations version 147 pkgstriptranslations: processing r-bioc-ballgown (in debian/r-bioc-ballgown); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-bioc-ballgown/DEBIAN/control, package r-bioc-ballgown, directory debian/r-bioc-ballgown pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-bioc-ballgown ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-bioc-ballgown' in '../r-bioc-ballgown_2.22.0+dfsg-2_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../r-bioc-ballgown_2.22.0+dfsg-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-06-14T23:17:12Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-bioc-ballgown_2.22.0+dfsg-2_amd64.changes: -------------------------------------------- Format: 1.8 Date: Mon, 14 Jun 2021 19:55:05 +0530 Source: r-bioc-ballgown Binary: r-bioc-ballgown Built-For-Profiles: noudeb Architecture: all Version: 2.22.0+dfsg-2 Distribution: impish-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Nilesh Patra Description: r-bioc-ballgown - Flexible, isoform-level differential expression analysis Changes: r-bioc-ballgown (2.22.0+dfsg-2) unstable; urgency=medium . * Source-only Upload. Checksums-Sha1: 595b7ead30bd6157e7b6347ab63a24b122c8c083 2914512 r-bioc-ballgown_2.22.0+dfsg-2_all.deb 13c83643140dcd77f11b6b961c8af80df85ba3c4 14115 r-bioc-ballgown_2.22.0+dfsg-2_amd64.buildinfo Checksums-Sha256: f47f933b129ab0c07c4054373019122ad3698077160429e6b8e98d611d433b03 2914512 r-bioc-ballgown_2.22.0+dfsg-2_all.deb d6b96aed14cd1ca3bc0c82a86f910e895b802ad6c4cb951c4b504f6853a88f0f 14115 r-bioc-ballgown_2.22.0+dfsg-2_amd64.buildinfo Files: 88b74b33fcbae374cf9b5d6bd4b9d0cd 2914512 gnu-r optional r-bioc-ballgown_2.22.0+dfsg-2_all.deb e6f97de9ae765496abe95910233fd575 14115 gnu-r optional r-bioc-ballgown_2.22.0+dfsg-2_amd64.buildinfo +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: r-bioc-ballgown Binary: r-bioc-ballgown Architecture: all Version: 2.22.0+dfsg-2 Checksums-Md5: 88b74b33fcbae374cf9b5d6bd4b9d0cd 2914512 r-bioc-ballgown_2.22.0+dfsg-2_all.deb Checksums-Sha1: 595b7ead30bd6157e7b6347ab63a24b122c8c083 2914512 r-bioc-ballgown_2.22.0+dfsg-2_all.deb Checksums-Sha256: f47f933b129ab0c07c4054373019122ad3698077160429e6b8e98d611d433b03 2914512 r-bioc-ballgown_2.22.0+dfsg-2_all.deb Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Mon, 14 Jun 2021 23:17:12 +0000 Build-Path: /<>/r-bioc-ballgown-2.22.0+dfsg Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.69-14), automake (= 1:1.16.3-2ubuntu1), autopoint (= 0.21-3ubuntu2), autotools-dev (= 20180224.1+nmu1), base-files (= 11.1ubuntu3), base-passwd (= 3.5.50), bash (= 5.1-3ubuntu1), binutils (= 2.36.50.20210603-0ubuntu1), binutils-common (= 2.36.50.20210603-0ubuntu1), binutils-x86-64-linux-gnu (= 2.36.50.20210603-0ubuntu1), bsdextrautils (= 2.36.1-7ubuntu2), bsdutils (= 1:2.36.1-7ubuntu2), build-essential (= 12.9ubuntu1), bzip2 (= 1.0.8-4ubuntu3), ca-certificates (= 20210119build1), coreutils (= 8.32-4ubuntu2), cpp (= 4:10.3.0-1ubuntu3), cpp-10 (= 10.3.0-4ubuntu1), dash (= 0.5.11+git20210120+802ebd4-1), dctrl-tools (= 2.24-3), debconf (= 1.5.77), debhelper (= 13.3.4ubuntu1), debianutils (= 4.11.2), debugedit (= 1:0.2+20210520-0ubuntu1), dh-autoreconf (= 20), dh-r (= 20210218ubuntu1), dh-strip-nondeterminism (= 1.12.0-1), diffutils (= 1:3.7-5ubuntu1), dpkg (= 1.20.9ubuntu1), dpkg-dev (= 1.20.9ubuntu1), dwz (= 0.14-1), file (= 1:5.39-3), findutils (= 4.8.0-1ubuntu1), fontconfig (= 2.13.1-4.2ubuntu3), fontconfig-config (= 2.13.1-4.2ubuntu3), fonts-dejavu-core (= 2.37-2build1), fonts-glyphicons-halflings (= 1.009~3.4.1+dfsg-2), fonts-mathjax (= 2.7.9+dfsg-1), g++ (= 4:10.3.0-1ubuntu3), g++-10 (= 10.3.0-4ubuntu1), gcc (= 4:10.3.0-1ubuntu3), gcc-10 (= 10.3.0-4ubuntu1), gcc-10-base (= 10.3.0-4ubuntu1), gcc-11-base (= 11.1.0-3ubuntu1), gettext (= 0.21-3ubuntu2), gettext-base (= 0.21-3ubuntu2), gfortran (= 4:10.3.0-1ubuntu3), gfortran-10 (= 10.3.0-4ubuntu1), grep (= 3.6-1), groff-base (= 1.22.4-6), gzip (= 1.10-4ubuntu1), hostname (= 3.23), icu-devtools (= 67.1-6ubuntu2), init-system-helpers (= 1.60), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-10ubuntu1), libalgorithm-c3-perl (= 0.11-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.1.0-3ubuntu1), libasn1-8-heimdal (= 7.7.0+dfsg-2), libatomic1 (= 11.1.0-3ubuntu1), libattr1 (= 1:2.4.48-6build1), libaudit-common (= 1:3.0-2ubuntu1), libaudit1 (= 1:3.0-2ubuntu1), libb-hooks-endofscope-perl (= 0.24-1.1), libb-hooks-op-check-perl (= 0.22-1build3), libbinutils (= 2.36.50.20210603-0ubuntu1), libblas-dev (= 3.9.0-3ubuntu2), libblas3 (= 3.9.0-3ubuntu2), libblkid1 (= 2.36.1-7ubuntu2), libboost-dev (= 1.74.0.3ubuntu5), libboost1.74-dev (= 1.74.0-8ubuntu2), libbrotli1 (= 1.0.9-2build2), libbsd0 (= 0.11.3-1ubuntu2), libbz2-1.0 (= 1.0.8-4ubuntu3), libbz2-dev (= 1.0.8-4ubuntu3), libc-ares2 (= 1.17.1-1), libc-bin (= 2.33-0ubuntu8), libc-dev-bin (= 2.33-0ubuntu8), libc6 (= 2.33-0ubuntu8), libc6-dev (= 2.33-0ubuntu8), libcairo2 (= 1.16.0-5ubuntu1), libcap-ng0 (= 0.7.9-2.2build1), libcap2 (= 1:2.44-1build1), libcc1-0 (= 11.1.0-3ubuntu1), libclass-c3-perl (= 0.35-1), libclass-load-perl (= 0.25-1), libclass-load-xs-perl (= 0.10-1build6), libcom-err2 (= 1.46.2-1ubuntu2), libcrypt-dev (= 1:4.4.18-4ubuntu1), libcrypt1 (= 1:4.4.18-4ubuntu1), libctf-nobfd0 (= 2.36.50.20210603-0ubuntu1), libctf0 (= 2.36.50.20210603-0ubuntu1), libcurl3-gnutls (= 7.74.0-1.2ubuntu2), libcurl4 (= 7.74.0-1.2ubuntu2), libdata-optlist-perl (= 0.110-1.1), libdatrie1 (= 0.2.13-1ubuntu2), libdb5.3 (= 5.3.28+dfsg1-0.8ubuntu1), libdebconfclient0 (= 0.256ubuntu3), libdebhelper-perl (= 13.3.4ubuntu1), libdeflate0 (= 1.7-1ubuntu1), libdevel-callchecker-perl (= 0.008-1ubuntu2), libdevel-globaldestruction-perl (= 0.14-1.1), libdevel-overloadinfo-perl (= 0.005-1), libdevel-stacktrace-perl (= 2.0400-1), libdist-checkconflicts-perl (= 0.11-1.1), libdpkg-perl (= 1.20.9ubuntu1), libdw1 (= 0.185-1), libdynaloader-functions-perl (= 0.003-1.1), libelf1 (= 0.185-1), libencode-locale-perl (= 1.05-1.1), libeval-closure-perl (= 0.14-1), libexpat1 (= 2.3.0-1), libffi8ubuntu1 (= 3.4~20200819gead65ca871-0ubuntu5), libfile-stripnondeterminism-perl (= 1.12.0-1), libfile-which-perl (= 1.23-1), libfontconfig1 (= 2.13.1-4.2ubuntu3), libfreetype6 (= 2.10.4+dfsg-1build1), libfribidi0 (= 1.0.8-2ubuntu1), libgcc-10-dev (= 10.3.0-4ubuntu1), libgcc-s1 (= 11.1.0-3ubuntu1), libgcrypt20 (= 1.8.7-5ubuntu1), libgdbm-compat4 (= 1.19-2), libgdbm6 (= 1.19-2), libgfortran-10-dev (= 10.3.0-4ubuntu1), libgfortran5 (= 11.1.0-3ubuntu1), libglib2.0-0 (= 2.68.1-2), libgmp10 (= 2:6.2.1+dfsg-1ubuntu2), libgnutls30 (= 3.7.1-4ubuntu1), libgomp1 (= 11.1.0-3ubuntu1), libgpg-error0 (= 1.38-2build1), libgraphite2-3 (= 1.3.14-1), libgssapi-krb5-2 (= 1.18.3-5), libgssapi3-heimdal (= 7.7.0+dfsg-2), libharfbuzz0b (= 2.7.4-1ubuntu1), libhcrypto4-heimdal (= 7.7.0+dfsg-2), libheimbase1-heimdal (= 7.7.0+dfsg-2), libheimntlm0-heimdal (= 7.7.0+dfsg-2), libhogweed6 (= 3.7.3-1), libhttp-date-perl (= 6.05-1), libhttp-message-perl (= 6.29-1), libhx509-5-heimdal (= 7.7.0+dfsg-2), libice6 (= 2:1.0.10-1), libicu-dev (= 67.1-6ubuntu2), libicu67 (= 67.1-6ubuntu2), libidn2-0 (= 2.3.1-1), libio-html-perl (= 1.004-2), libisl23 (= 0.24-1), libitm1 (= 11.1.0-3ubuntu1), libjbig0 (= 2.1-3.1build1), libjpeg-dev (= 8c-2ubuntu8), libjpeg-turbo8 (= 2.0.6-0ubuntu2), libjpeg-turbo8-dev (= 2.0.6-0ubuntu2), libjpeg8 (= 8c-2ubuntu8), libjpeg8-dev (= 8c-2ubuntu8), libjs-bootstrap (= 3.4.1+dfsg-2), libjs-highlight.js (= 9.18.5+dfsg1-1), libjs-jquery (= 3.5.1+dfsg+~3.5.5-7), libjs-jquery-datatables (= 1.10.21+dfsg-2), libjs-mathjax (= 2.7.9+dfsg-1), libk5crypto3 (= 1.18.3-5), libkeyutils1 (= 1.6.1-2ubuntu1), libkrb5-26-heimdal (= 7.7.0+dfsg-2), libkrb5-3 (= 1.18.3-5), libkrb5support0 (= 1.18.3-5), liblapack-dev (= 3.9.0-3ubuntu2), liblapack3 (= 3.9.0-3ubuntu2), libldap-2.4-2 (= 2.4.57+dfsg-2ubuntu1), liblsan0 (= 11.1.0-3ubuntu1), liblwp-mediatypes-perl (= 6.04-1), liblz4-1 (= 1.9.3-2), liblzma-dev (= 5.2.5-2), liblzma5 (= 5.2.5-2), libmagic-mgc (= 1:5.39-3), libmagic1 (= 1:5.39-3), libmd0 (= 1.0.3-3build1), libmodule-implementation-perl (= 0.09-1.1), libmodule-runtime-conflicts-perl (= 0.003-1.1), libmodule-runtime-perl (= 0.016-1), libmoose-perl (= 2.2014-2), libmount1 (= 2.36.1-7ubuntu2), libmpc3 (= 1.2.0-1build1), libmpfr6 (= 4.1.0-3build1), libmro-compat-perl (= 0.13-1), libnamespace-clean-perl (= 0.27-1), libncurses-dev (= 6.2+20201114-2build1), libncurses5-dev (= 6.2+20201114-2build1), libncurses6 (= 6.2+20201114-2build1), libncursesw6 (= 6.2+20201114-2build1), libnettle8 (= 3.7.3-1), libnghttp2-14 (= 1.43.0-1), libnode72 (= 12.21.0~dfsg-4ubuntu1), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libp11-kit0 (= 0.23.22-1), libpackage-deprecationmanager-perl (= 0.17-1.1), libpackage-stash-perl (= 0.39-1), libpackage-stash-xs-perl (= 0.29-1build3), libpam-modules (= 1.3.1-5ubuntu7), libpam-modules-bin (= 1.3.1-5ubuntu7), libpam-runtime (= 1.3.1-5ubuntu7), libpam0g (= 1.3.1-5ubuntu7), libpango-1.0-0 (= 1.48.2-1build2), libpangocairo-1.0-0 (= 1.48.2-1build2), libpangoft2-1.0-0 (= 1.48.2-1build2), libpaper-utils (= 1.1.28), libpaper1 (= 1.1.28), libparams-classify-perl (= 0.015-1build3), libparams-util-perl (= 1.102-1build1), libpcre16-3 (= 2:8.39-13build3), libpcre2-16-0 (= 10.36-2ubuntu5), libpcre2-32-0 (= 10.36-2ubuntu5), libpcre2-8-0 (= 10.36-2ubuntu5), libpcre2-dev (= 10.36-2ubuntu5), libpcre2-posix2 (= 10.36-2ubuntu5), libpcre3 (= 2:8.39-13build3), libpcre3-dev (= 2:8.39-13build3), libpcre32-3 (= 2:8.39-13build3), libpcrecpp0v5 (= 2:8.39-13build3), libperl5.32 (= 5.32.1-3ubuntu2), libpipeline1 (= 1.5.3-1), libpixman-1-0 (= 0.40.0-1build2), libpng-dev (= 1.6.37-3build3), libpng16-16 (= 1.6.37-3build3), libpsl5 (= 0.21.0-1.2), libquadmath0 (= 11.1.0-3ubuntu1), libreadline-dev (= 8.1-2), libreadline8 (= 8.1-2), libroken18-heimdal (= 7.7.0+dfsg-2), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build2), libsasl2-2 (= 2.1.27+dfsg-2.1), libsasl2-modules-db (= 2.1.27+dfsg-2.1), libseccomp2 (= 2.5.1-1ubuntu1), libselinux1 (= 3.1-3build1), libsigsegv2 (= 2.13-1ubuntu1), libsm6 (= 2:1.2.3-1), libsmartcols1 (= 2.36.1-7ubuntu2), libsqlite3-0 (= 3.35.5-1), libssh-4 (= 0.9.5-1), libssl1.1 (= 1.1.1j-1ubuntu4), libstdc++-10-dev (= 10.3.0-4ubuntu1), libstdc++6 (= 11.1.0-3ubuntu1), libsub-exporter-perl (= 0.987-1), libsub-exporter-progressive-perl (= 0.001013-1), libsub-identify-perl (= 0.14-1build3), libsub-install-perl (= 0.928-1.1), libsub-name-perl (= 0.26-1build1), libsub-override-perl (= 0.09-2), libswitch-perl (= 2.17-2.1), libsystemd0 (= 248.3-1ubuntu1), libtasn1-6 (= 4.16.0-2), libtcl8.6 (= 8.6.11+dfsg-1), libthai-data (= 0.1.28-4), libthai0 (= 0.1.28-4), libtiff5 (= 4.3.0-1), libtimedate-perl (= 2.3300-2), libtinfo6 (= 6.2+20201114-2build1), libtirpc-common (= 1.3.1-1build1), libtirpc-dev (= 1.3.1-1build1), libtirpc3 (= 1.3.1-1build1), libtk8.6 (= 8.6.11-2), libtool (= 2.4.6-15), libtry-tiny-perl (= 0.30-1), libtsan0 (= 11.1.0-3ubuntu1), libubsan1 (= 11.1.0-3ubuntu1), libuchardet0 (= 0.0.7-1), libudev1 (= 248.3-1ubuntu1), libunistring2 (= 0.9.10-4), liburi-perl (= 5.08-1), libuuid1 (= 2.36.1-7ubuntu2), libvariable-magic-perl (= 0.62-1build3), libwebp6 (= 0.6.1-2.1), libwind0-heimdal (= 7.7.0+dfsg-2), libwww-curl-perl (= 4.17-7build1), libwww-curl-simple-perl (= 0.100191-2), libx11-6 (= 2:1.7.1-1), libx11-data (= 2:1.7.1-1), libxau6 (= 1:1.0.9-1build3), libxcb-render0 (= 1.14-3ubuntu1), libxcb-shm0 (= 1.14-3ubuntu1), libxcb1 (= 1.14-3ubuntu1), libxdmcp6 (= 1:1.1.3-0ubuntu3), libxext6 (= 2:1.3.4-0ubuntu3), libxft2 (= 2.3.3-0ubuntu3), libxml2 (= 2.9.10+dfsg-6.7), libxmuu1 (= 2:1.1.3-0ubuntu1), libxrender1 (= 1:0.9.10-1build2), libxss1 (= 1:1.2.3-1), libxt6 (= 1:1.2.0-1), libzstd1 (= 1.4.8+dfsg-2.1), linux-libc-dev (= 5.11.0-20.21+21.10.1), littler (= 0.3.12-1), login (= 1:4.8.1-1ubuntu8), lsb-base (= 11.1.0ubuntu2), lto-disabled-list (= 10), m4 (= 1.4.18-5), make (= 4.3-4ubuntu1), man-db (= 2.9.4-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2+20201114-2build1), ncurses-bin (= 6.2+20201114-2build1), node-highlight.js (= 9.18.5+dfsg1-1), node-normalize.css (= 8.0.1-3), nodejs (= 12.21.0~dfsg-4ubuntu1), openssl (= 1.1.1j-1ubuntu4), patch (= 2.7.6-7), perl (= 5.32.1-3ubuntu2), perl-base (= 5.32.1-3ubuntu2), perl-modules-5.32 (= 5.32.1-3ubuntu2), pkg-config (= 0.29.2-1ubuntu1), po-debconf (= 1.0.21+nmu1), r-base-core (= 4.0.4-1build1), r-base-dev (= 4.0.4-1build1), r-bioc-annotate (= 1.68.0+dfsg-1), r-bioc-annotationdbi (= 1.52.0-1), r-bioc-biobase (= 2.50.0-1build1), r-bioc-biocgenerics (= 0.36.0-1), r-bioc-biocparallel (= 1.24.1-1), r-bioc-biostrings (= 2.58.0-1), r-bioc-delayedarray (= 0.16.1+dfsg-1), r-bioc-edger (= 3.32.1+dfsg-1), r-bioc-genefilter (= 1.72.1-1), r-bioc-genomeinfodb (= 1.26.2-2), r-bioc-genomeinfodbdata (= 1.2.4-1), r-bioc-genomicalignments (= 1.26.0-1), r-bioc-genomicranges (= 1.42.0+dfsg-1), r-bioc-iranges (= 2.24.1-1), r-bioc-limma (= 3.46.0+dfsg-1), r-bioc-matrixgenerics (= 1.2.1-4), r-bioc-rhtslib (= 1.22.0+dfsg-1), r-bioc-rsamtools (= 2.6.0-1), r-bioc-rtracklayer (= 1.50.0-1), r-bioc-s4vectors (= 0.28.1-1), r-bioc-summarizedexperiment (= 1.20.0+dfsg-1), r-bioc-sva (= 3.38.0-1), r-bioc-xvector (= 0.30.0-1), r-bioc-zlibbioc (= 1.36.0+dfsg-1), r-cran-askpass (= 1.1-2), r-cran-bh (= 1.74.0-1), r-cran-bit (= 4.0.4+dfsg-1), r-cran-bit64 (= 4.0.5-1), r-cran-bitops (= 1.0-6-5), r-cran-blob (= 1.2.1-2build1), r-cran-cachem (= 1.0.3-1), r-cran-crayon (= 1.4.0-1), r-cran-curl (= 4.3+dfsg-1build1), r-cran-dbi (= 1.1.1-1), r-cran-digest (= 0.6.27-1), r-cran-ellipsis (= 0.3.1-1build1), r-cran-evaluate (= 0.14-2build1), r-cran-fastmap (= 1.1.0-1), r-cran-formatr (= 1.7-2build1), r-cran-futile.logger (= 1.4.3-4build1), r-cran-futile.options (= 1.0.1-3build1), r-cran-glue (= 1.4.2-1), r-cran-highr (= 0.8+dfsg-2build1), r-cran-httr (= 1.4.2-1), r-cran-jsonlite (= 1.7.2+dfsg-1), r-cran-knitr (= 1.31+dfsg-1), r-cran-lambda.r (= 1.2.4-2build1), r-cran-lattice (= 0.20-41-1build1), r-cran-littler (= 0.3.12-1), r-cran-locfit (= 1.5-9.4-2build1), r-cran-magrittr (= 2.0.1-1), r-cran-markdown (= 1.1+dfsg-1build1), r-cran-matrix (= 1.3-2+really1.3-2-0ubuntu1), r-cran-matrixstats (= 0.58.0-3), r-cran-memoise (= 2.0.0-1), r-cran-mgcv (= 1.8-34-1), r-cran-mime (= 0.9-1build1), r-cran-nlme (= 3.1.152-1), r-cran-openssl (= 1.4.3+dfsg-2), r-cran-pkgconfig (= 2.0.3-2build1), r-cran-pkgkitten (= 0.2.1-1), r-cran-plogr (= 0.2.0-3build1), r-cran-r6 (= 2.5.0-1), r-cran-rcolorbrewer (= 1.1-2-3), r-cran-rcpp (= 1.0.6-1), r-cran-rcurl (= 1.98-1.2-1build1), r-cran-rlang (= 0.4.10-1ubuntu1), r-cran-rsqlite (= 2.2.3-1), r-cran-snow (= 1:0.4.3-2), r-cran-stringi (= 1.5.3-1), r-cran-stringr (= 1.4.0-2build1), r-cran-survival (= 3.2-10-1), r-cran-sys (= 3.4-1), r-cran-vctrs (= 0.3.6-1), r-cran-xfun (= 0.20-1), r-cran-xml (= 3.99-0.6-1), r-cran-xtable (= 1:1.8-4-2), r-cran-yaml (= 2.2.1-1build1), readline-common (= 8.1-2), rpcsvc-proto (= 1.4.2-0ubuntu4), sed (= 4.7-1ubuntu1), sensible-utils (= 0.0.14), sysvinit-utils (= 2.96-7ubuntu1), tar (= 1.34+dfsg-1build1), tzdata (= 2021a-1ubuntu1), ucf (= 3.0043), unzip (= 6.0-26ubuntu1), util-linux (= 2.36.1-7ubuntu2), x11-common (= 1:7.7+22ubuntu1), xauth (= 1:1.1-1), xdg-utils (= 1.1.3-2ubuntu2), xz-utils (= 5.2.5-2), zip (= 3.0-12), zlib1g (= 1:1.2.11.dfsg-2ubuntu6), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu6) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1623680705" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-bioc-ballgown_2.22.0+dfsg-2_all.deb ------------------------------------- new Debian package, version 2.0. size 2914512 bytes: control archive=3320 bytes. 954 bytes, 16 lines control 12829 bytes, 141 lines md5sums Package: r-bioc-ballgown Version: 2.22.0+dfsg-2 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian R Packages Maintainers Installed-Size: 4504 Depends: r-base-core (>= 4.0.4-1build1), r-api-4.0, r-api-bioc-3.12, r-bioc-genomicranges (>= 1.17.25), r-bioc-iranges (>= 1.99.22), r-bioc-s4vectors (>= 0.9.39), r-cran-rcolorbrewer, r-bioc-sva, r-bioc-limma, r-bioc-rtracklayer (>= 1.29.25), r-bioc-biobase (>= 2.25.0), r-bioc-genomeinfodb Recommends: r-cran-testthat Suggests: r-cran-knitr Section: gnu-r Priority: optional Homepage: https://bioconductor.org/packages/ballgown/ Description: Flexible, isoform-level differential expression analysis Tools for statistical analysis of assembled transcriptomes, including flexible differential expression analysis, visualization of transcript structures, and matching of assembled transcripts to annotation. drwxr-xr-x root/root 0 2021-06-14 14:25 ./ drwxr-xr-x root/root 0 2021-06-14 14:25 ./usr/ drwxr-xr-x root/root 0 2021-06-14 14:25 ./usr/lib/ drwxr-xr-x 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+------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: n/a Build-Time: 44 Distribution: impish-proposed Host Architecture: amd64 Install-Time: 43 Job: r-bioc-ballgown_2.22.0+dfsg-2.dsc Machine Architecture: amd64 Package: r-bioc-ballgown Package-Time: 87 Source-Version: 2.22.0+dfsg-2 Space: n/a Status: successful Version: 2.22.0+dfsg-2 -------------------------------------------------------------------------------- Finished at 2021-06-14T23:17:12Z Build needed 00:01:27, no disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=impish --arch=amd64 PACKAGEBUILD-21694102 Scanning for processes to kill in 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