RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux lgw01-60 3.19.0-31-generic #36~14.04.1-Ubuntu SMP Thu Oct 8 10:21:08 UTC 2015 x86_64 Buildd toolchain package versions: launchpad-buildd_134 python-lpbuildd_134 sbuild_0.65.2-1ubuntu2~ubuntu14.04.1~ppa6 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.04.1 bzr_2.6.0+bzr6593-1ubuntu1.1 dpkg-dev_1.17.5ubuntu5.4 python-debian_0.1.27ubuntu1~ubuntu14.04.1~ppa1. Syncing the system clock with the buildd NTP service... 29 Oct 23:12:30 ntpdate[1652]: adjust time server 10.211.37.1 offset -0.004052 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-8219544', '/home/buildd/filecache-default/8204889cda79fca0b488b979ea0c52fb9d6dbd17'] Unpacking chroot for build PACKAGEBUILD-8219544 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-8219544'] Mounting chroot for build PACKAGEBUILD-8219544 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-8219544', 'deb http://ftpmaster.internal/ubuntu xenial main universe', 'deb http://ftpmaster.internal/ubuntu xenial-security main universe', 'deb http://ftpmaster.internal/ubuntu xenial-updates main universe', 'deb http://ftpmaster.internal/ubuntu xenial-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-8219544 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-8219544', 'amd64'] Updating debian chroot for build PACKAGEBUILD-8219544 Get:1 http://ftpmaster.internal xenial InRelease [218 kB] Get:2 http://ftpmaster.internal xenial-security InRelease [64.4 kB] Get:3 http://ftpmaster.internal xenial-updates InRelease [64.4 kB] Get:4 http://ftpmaster.internal xenial-proposed InRelease [64.4 kB] Get:5 http://ftpmaster.internal xenial/main amd64 Packages [1427 kB] Get:6 http://ftpmaster.internal xenial/universe amd64 Packages [6881 kB] Get:7 http://ftpmaster.internal xenial/main Translation-en [839 kB] Get:8 http://ftpmaster.internal xenial/universe Translation-en [4695 kB] Get:9 http://ftpmaster.internal xenial-security/main amd64 Packages [28 B] Get:10 http://ftpmaster.internal xenial-security/universe amd64 Packages [28 B] Get:11 http://ftpmaster.internal xenial-security/main Translation-en [28 B] Get:12 http://ftpmaster.internal xenial-security/universe Translation-en [28 B] Get:13 http://ftpmaster.internal xenial-updates/main amd64 Packages [28 B] Get:14 http://ftpmaster.internal xenial-updates/universe amd64 Packages [28 B] Get:15 http://ftpmaster.internal xenial-updates/main Translation-en [28 B] Get:16 http://ftpmaster.internal xenial-updates/universe Translation-en [28 B] Get:17 http://ftpmaster.internal xenial-proposed/main amd64 Packages [80.3 kB] Get:18 http://ftpmaster.internal xenial-proposed/universe amd64 Packages [242 kB] Get:19 http://ftpmaster.internal xenial-proposed/main Translation-en [37.1 kB] Get:20 http://ftpmaster.internal xenial-proposed/universe Translation-en [137 kB] Fetched 14.7 MB in 6s (2240 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: udev Use 'apt-get autoremove' to remove it. The following packages will be upgraded: advancecomp base-files binutils bsdutils cpp-5 diffutils dpkg dpkg-dev g++-5 gcc-5 gcc-5-base init libasan2 libatomic1 libblkid1 libcap2 libcap2-bin libcc1-0 libcilkrts5 libdpkg-perl libfdisk1 libgcc-5-dev libgcc1 libgcrypt20 libgomp1 libgpg-error0 libgssapi-krb5-2 libitm1 libk5crypto3 libkrb5-3 libkrb5support0 liblsan0 libmount1 libmpx0 libquadmath0 libsmartcols1 libsqlite3-0 libstdc++-5-dev libstdc++6 libsystemd0 libtasn1-6 libtsan0 libubsan0 libudev1 libuuid1 mount pkg-create-dbgsym systemd systemd-sysv udev util-linux 51 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 108 MB of archives. After this operation, 326 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ xenial/main base-files amd64 9.4ubuntu2 [62.2 kB] Get:2 http://ftpmaster.internal/ubuntu/ xenial/main bsdutils amd64 1:2.27-3ubuntu1 [52.1 kB] Get:3 http://ftpmaster.internal/ubuntu/ xenial/main diffutils amd64 1:3.3-2 [156 kB] Get:4 http://ftpmaster.internal/ubuntu/ xenial/main dpkg amd64 1.18.3ubuntu1 [2081 kB] Get:5 http://ftpmaster.internal/ubuntu/ xenial/main init amd64 1.24ubuntu1 [4006 B] Get:6 http://ftpmaster.internal/ubuntu/ xenial/main libsmartcols1 amd64 2.27-3ubuntu1 [63.3 kB] Get:7 http://ftpmaster.internal/ubuntu/ xenial/main libuuid1 amd64 2.27-3ubuntu1 [15.8 kB] Get:8 http://ftpmaster.internal/ubuntu/ xenial/main libblkid1 amd64 2.27-3ubuntu1 [107 kB] Get:9 http://ftpmaster.internal/ubuntu/ xenial/main libfdisk1 amd64 2.27-3ubuntu1 [139 kB] Get:10 http://ftpmaster.internal/ubuntu/ xenial/main util-linux amd64 2.27-3ubuntu1 [848 kB] Get:11 http://ftpmaster.internal/ubuntu/ xenial/main mount amd64 2.27-3ubuntu1 [121 kB] Get:12 http://ftpmaster.internal/ubuntu/ xenial/main udev amd64 227-2ubuntu1 [972 kB] Get:13 http://ftpmaster.internal/ubuntu/ xenial/main libudev1 amd64 227-2ubuntu1 [56.9 kB] Get:14 http://ftpmaster.internal/ubuntu/ xenial/main libcap2 amd64 1:2.24-12 [12.9 kB] Get:15 http://ftpmaster.internal/ubuntu/ xenial/main libmount1 amd64 2.27-3ubuntu1 [115 kB] Get:16 http://ftpmaster.internal/ubuntu/ xenial/main libcap2-bin amd64 1:2.24-12 [20.2 kB] Get:17 http://ftpmaster.internal/ubuntu/ xenial/main libsystemd0 amd64 227-2ubuntu1 [203 kB] Get:18 http://ftpmaster.internal/ubuntu/ xenial/main systemd amd64 227-2ubuntu1 [3443 kB] Get:19 http://ftpmaster.internal/ubuntu/ xenial/main systemd-sysv amd64 227-2ubuntu1 [15.0 kB] Get:20 http://ftpmaster.internal/ubuntu/ xenial/main libgomp1 amd64 5.2.1-23ubuntu1 [55.2 kB] Get:21 http://ftpmaster.internal/ubuntu/ xenial/main libitm1 amd64 5.2.1-23ubuntu1 [27.4 kB] Get:22 http://ftpmaster.internal/ubuntu/ xenial/main libatomic1 amd64 5.2.1-23ubuntu1 [8886 B] Get:23 http://ftpmaster.internal/ubuntu/ xenial/main libasan2 amd64 5.2.1-23ubuntu1 [269 kB] Get:24 http://ftpmaster.internal/ubuntu/ xenial/main liblsan0 amd64 5.2.1-23ubuntu1 [109 kB] Get:25 http://ftpmaster.internal/ubuntu/ xenial/main libtsan0 amd64 5.2.1-23ubuntu1 [249 kB] Get:26 http://ftpmaster.internal/ubuntu/ xenial/main libubsan0 amd64 5.2.1-23ubuntu1 [100 kB] Get:27 http://ftpmaster.internal/ubuntu/ xenial/main libcilkrts5 amd64 5.2.1-23ubuntu1 [40.0 kB] Get:28 http://ftpmaster.internal/ubuntu/ xenial/main libmpx0 amd64 5.2.1-23ubuntu1 [9738 B] Get:29 http://ftpmaster.internal/ubuntu/ xenial/main libquadmath0 amd64 5.2.1-23ubuntu1 [131 kB] Get:30 http://ftpmaster.internal/ubuntu/ xenial/main cpp-5 amd64 5.2.1-23ubuntu1 [26.4 MB] Get:31 http://ftpmaster.internal/ubuntu/ xenial/main libcc1-0 amd64 5.2.1-23ubuntu1 [30.9 kB] Get:32 http://ftpmaster.internal/ubuntu/ xenial/main binutils amd64 2.25.51.20151028-0ubuntu1 [2313 kB] Get:33 http://ftpmaster.internal/ubuntu/ xenial/main g++-5 amd64 5.2.1-23ubuntu1 [37.0 MB] Get:34 http://ftpmaster.internal/ubuntu/ xenial/main gcc-5 amd64 5.2.1-23ubuntu1 [26.6 MB] Get:35 http://ftpmaster.internal/ubuntu/ xenial/main libgcc-5-dev amd64 5.2.1-23ubuntu1 [2233 kB] Get:36 http://ftpmaster.internal/ubuntu/ xenial/main gcc-5-base amd64 5.2.1-23ubuntu1 [16.6 kB] Get:37 http://ftpmaster.internal/ubuntu/ xenial/main libstdc++6 amd64 5.2.1-23ubuntu1 [393 kB] Get:38 http://ftpmaster.internal/ubuntu/ xenial/main libstdc++-5-dev amd64 5.2.1-23ubuntu1 [1421 kB] Get:39 http://ftpmaster.internal/ubuntu/ xenial/main libgcc1 amd64 1:5.2.1-23ubuntu1 [38.8 kB] Get:40 http://ftpmaster.internal/ubuntu/ xenial/main libgpg-error0 amd64 1.20-1 [32.8 kB] Get:41 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libgcrypt20 amd64 1.6.4-3 [336 kB] Get:42 http://ftpmaster.internal/ubuntu/ xenial/main libdpkg-perl all 1.18.3ubuntu1 [195 kB] Get:43 http://ftpmaster.internal/ubuntu/ xenial/main dpkg-dev all 1.18.3ubuntu1 [583 kB] Get:44 http://ftpmaster.internal/ubuntu/ xenial/main libsqlite3-0 amd64 3.9.1-2 [395 kB] Get:45 http://ftpmaster.internal/ubuntu/ xenial/main libtasn1-6 amd64 4.7-2 [43.1 kB] Get:46 http://ftpmaster.internal/ubuntu/ xenial/main libgssapi-krb5-2 amd64 1.13.2+dfsg-3 [119 kB] Get:47 http://ftpmaster.internal/ubuntu/ xenial/main libkrb5-3 amd64 1.13.2+dfsg-3 [273 kB] Get:48 http://ftpmaster.internal/ubuntu/ xenial/main libkrb5support0 amd64 1.13.2+dfsg-3 [30.2 kB] Get:49 http://ftpmaster.internal/ubuntu/ xenial/main libk5crypto3 amd64 1.13.2+dfsg-3 [81.3 kB] Get:50 http://ftpmaster.internal/ubuntu/ xenial/main advancecomp amd64 1.20-1 [160 kB] Get:51 http://ftpmaster.internal/ubuntu/ xenial/main pkg-create-dbgsym all 0.70 [9046 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 108 MB in 40s (2699 kB/s) (Reading database ... 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Updating /etc/profile to current default. Updating /etc/nsswitch.conf to current default. Updating /root/.profile to current default. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11692 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.27-3ubuntu1_amd64.deb ... Unpacking bsdutils (1:2.27-3ubuntu1) over (1:2.26.2-6ubuntu3) ... Setting up bsdutils (1:2.27-3ubuntu1) ... (Reading database ... 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Installing new version of config file /etc/systemd/system.conf ... addgroup: The group `systemd-journal' already exists as a system group. Exiting. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11699 files and directories currently installed.) Preparing to unpack .../systemd-sysv_227-2ubuntu1_amd64.deb ... Unpacking systemd-sysv (227-2ubuntu1) over (225-1ubuntu9) ... Setting up systemd-sysv (227-2ubuntu1) ... (Reading database ... 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Installing new version of config file /etc/init.d/udev ... addgroup: The group `input' already exists as a system group. Exiting. virtio network devices detected, disabling predictable interface names in /etc/systemd/network/50-virtio-kernel-names.link Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of restart. Setting up libgomp1:amd64 (5.2.1-23ubuntu1) ... Setting up libitm1:amd64 (5.2.1-23ubuntu1) ... Setting up libatomic1:amd64 (5.2.1-23ubuntu1) ... Setting up libasan2:amd64 (5.2.1-23ubuntu1) ... Setting up liblsan0:amd64 (5.2.1-23ubuntu1) ... Setting up libtsan0:amd64 (5.2.1-23ubuntu1) ... Setting up libubsan0:amd64 (5.2.1-23ubuntu1) ... Setting up libcilkrts5:amd64 (5.2.1-23ubuntu1) ... Setting up libmpx0:amd64 (5.2.1-23ubuntu1) ... Setting up libquadmath0:amd64 (5.2.1-23ubuntu1) ... Setting up cpp-5 (5.2.1-23ubuntu1) ... Setting up libcc1-0:amd64 (5.2.1-23ubuntu1) ... Setting up binutils (2.25.51.20151028-0ubuntu1) ... Setting up libgcc-5-dev:amd64 (5.2.1-23ubuntu1) ... Setting up gcc-5 (5.2.1-23ubuntu1) ... Setting up libstdc++-5-dev:amd64 (5.2.1-23ubuntu1) ... Setting up g++-5 (5.2.1-23ubuntu1) ... Setting up libdpkg-perl (1.18.3ubuntu1) ... Setting up dpkg-dev (1.18.3ubuntu1) ... Setting up libsqlite3-0:amd64 (3.9.1-2) ... Setting up libtasn1-6:amd64 (4.7-2) ... Setting up libkrb5support0:amd64 (1.13.2+dfsg-3) ... Setting up libk5crypto3:amd64 (1.13.2+dfsg-3) ... Setting up libkrb5-3:amd64 (1.13.2+dfsg-3) ... Setting up libgssapi-krb5-2:amd64 (1.13.2+dfsg-3) ... Setting up advancecomp (1.20-1) ... Setting up pkg-create-dbgsym (0.70) ... Processing triggers for systemd (227-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-8219544', 'amd64', 'xenial-proposed', '-c', 'chroot:autobuild', '--arch=amd64', '--dist=xenial-proposed', '--purge=never', '--nolog', '-A', 'r-bioc-biobase_2.30.0-1.dsc'] Initiating build PACKAGEBUILD-8219544 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 3.19.0-31-generic #36~14.04.1-Ubuntu SMP Thu Oct 8 10:21:08 UTC 2015 x86_64 sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on lgw01-60.buildd ╔══════════════════════════════════════════════════════════════════════════════╗ ║ r-bioc-biobase 2.30.0-1 (amd64) 29 Oct 2015 23:13 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: r-bioc-biobase Version: 2.30.0-1 Source Version: 2.30.0-1 Distribution: xenial-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/r-bioc-biobase-TYdQQO/r-bioc-biobase-2.30.0' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/r-bioc-biobase-TYdQQO' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-8219544/chroot-autobuild' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Local sources ───────────── r-bioc-biobase_2.30.0-1.dsc exists in .; copying to chroot Check architectures ─────────────────── Check dependencies ────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-KWtNPK/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign file: ./ InRelease Ign file: ./ Release.gpg Get:1 file: ./ Release [2119 B] Ign file: ./ Translation-en Reading package lists... Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/772 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed Authentication warning overridden. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11719 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), cdbs, debhelper (>= 9), r-base-dev, r-bioc-biocgenerics (>= 0.3.2) Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), cdbs, debhelper (>= 9), r-base-dev, r-bioc-biocgenerics (>= 0.3.2) dpkg-deb: building package 'sbuild-build-depends-r-bioc-biobase-dummy' in '/«BUILDDIR»/resolver-sZgzRC/apt_archive/sbuild-build-depends-r-bioc-biobase-dummy.deb'. Ign file: ./ InRelease Ign file: ./ Release.gpg Get:1 file: ./ Release [2119 B] Ign file: ./ Translation-en Reading package lists... Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install r-bioc-biobase build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autoconf automake autotools-dev bsdmainutils cdbs debhelper dh-translations file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-5 groff-base intltool intltool-debian libasprintf0v5 libblas-common libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libcurl3 libdatrie1 libencode-locale-perl libexpat1 libfile-listing-perl libfontconfig1 libfreetype6 libgfortran-5-dev libgfortran3 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libicu55 libio-html-perl libio-socket-ssl-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic1 libncurses5-dev libnet-http-perl libnet-ssleay-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng12-dev libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline-dev libreadline6-dev libsigsegv2 libsm6 libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev libtk8.6 libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2 libxrender1 libxss1 libxt6 m4 man-db mime-support netbase po-debconf python python-minimal python-scour python2.7 python2.7-minimal r-base-core r-base-dev r-bioc-biocgenerics ucf unzip x11-common xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc libtool wamerican wordlist whois vacation devscripts dh-make gettext-doc gfortran-multilib gfortran-doc gfortran-5-multilib gfortran-5-doc libgfortran3-dbg groff libdata-dump-perl libcrypt-ssleay-perl liblzma-doc ncurses-doc readline-doc tcl8.6 tk8.6 libauthen-ntlm-perl less www-browser libmail-box-perl python-doc python-tk python-rsvg python-cairo python2.7-doc binfmt-support r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo gvfs-bin Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev bzip2-doc libglib2.0-data shared-mime-info xdg-user-dirs libhtml-format-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl xml-core ifupdown libmail-sendmail-perl r-recommended r-doc-html libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autotools-dev bsdmainutils cdbs debhelper dh-translations file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-5 groff-base intltool intltool-debian libasprintf0v5 libblas-common libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libcurl3 libdatrie1 libencode-locale-perl libexpat1 libfile-listing-perl libfontconfig1 libfreetype6 libgfortran-5-dev libgfortran3 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libicu55 libio-html-perl libio-socket-ssl-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic1 libncurses5-dev libnet-http-perl libnet-ssleay-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng12-dev libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline-dev libreadline6-dev libsigsegv2 libsm6 libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev libtk8.6 libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2 libxrender1 libxss1 libxt6 m4 man-db mime-support netbase po-debconf python python-minimal python-scour python2.7 python2.7-minimal r-base-core r-base-dev r-bioc-biocgenerics sbuild-build-depends-r-bioc-biobase-dummy ucf unzip x11-common xdg-utils zip zlib1g-dev 0 upgraded, 127 newly installed, 0 to remove and 0 not upgraded. Need to get 82.1 MB/82.1 MB of archives. After this operation, 303 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-r-bioc-biobase-dummy Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ xenial/main libasprintf0v5 amd64 0.19.4-1ubuntu3 [6676 B] Get:2 http://ftpmaster.internal/ubuntu/ xenial/main libxau6 amd64 1:1.0.8-1 [8376 B] Get:3 http://ftpmaster.internal/ubuntu/ xenial/main libxdmcp6 amd64 1:1.1.2-1 [11.2 kB] Get:4 http://ftpmaster.internal/ubuntu/ xenial/main libxcb1 amd64 1.11-0ubuntu1 [40.1 kB] Get:5 http://ftpmaster.internal/ubuntu/ xenial/main libx11-data all 2:1.6.3-1ubuntu2 [113 kB] Get:6 http://ftpmaster.internal/ubuntu/ xenial/main libx11-6 amd64 2:1.6.3-1ubuntu2 [571 kB] Get:7 http://ftpmaster.internal/ubuntu/ xenial/main libxext6 amd64 2:1.3.3-1 [29.4 kB] Get:8 http://ftpmaster.internal/ubuntu/ xenial/main groff-base amd64 1.22.3-1 [1183 kB] Get:9 http://ftpmaster.internal/ubuntu/ xenial/main bsdmainutils amd64 9.0.6ubuntu1 [175 kB] Get:10 http://ftpmaster.internal/ubuntu/ xenial/main libpipeline1 amd64 1.4.1-1 [24.9 kB] Get:11 http://ftpmaster.internal/ubuntu/ xenial/main man-db amd64 2.7.4-1 [858 kB] Get:12 http://ftpmaster.internal/ubuntu/ xenial/main fonts-dejavu-core all 2.35-1 [1039 kB] Get:13 http://ftpmaster.internal/ubuntu/ xenial/main ucf all 3.0030 [55.5 kB] Get:14 http://ftpmaster.internal/ubuntu/ xenial/main fontconfig-config all 2.11.1-0ubuntu6 [48.7 kB] Get:15 http://ftpmaster.internal/ubuntu/ xenial/main libexpat1 amd64 2.1.0-7 [71.4 kB] Get:16 http://ftpmaster.internal/ubuntu/ xenial/main libfreetype6 amd64 2.5.2-4ubuntu2 [312 kB] Get:17 http://ftpmaster.internal/ubuntu/ xenial/main libfontconfig1 amd64 2.11.1-0ubuntu6 [127 kB] Get:18 http://ftpmaster.internal/ubuntu/ xenial/main fontconfig amd64 2.11.1-0ubuntu6 [176 kB] Get:19 http://ftpmaster.internal/ubuntu/ xenial/main libglib2.0-0 amd64 2.46.1-1 [1108 kB] Get:20 http://ftpmaster.internal/ubuntu/ xenial/main libicu55 amd64 55.1-4ubuntu1 [7652 kB] Get:21 http://ftpmaster.internal/ubuntu/ xenial/main libxml2 amd64 2.9.2+zdfsg1-4 [692 kB] Get:22 http://ftpmaster.internal/ubuntu/ xenial/main libcroco3 amd64 0.6.8-3 [83.2 kB] Get:23 http://ftpmaster.internal/ubuntu/ xenial/main libgraphite2-3 amd64 1.2.4-3ubuntu1 [54.6 kB] Get:24 http://ftpmaster.internal/ubuntu/ xenial/main x11-common all 1:7.7+7ubuntu4 [58.6 kB] Get:25 http://ftpmaster.internal/ubuntu/ xenial/main libice6 amd64 2:1.0.9-1 [39.2 kB] Get:26 http://ftpmaster.internal/ubuntu/ xenial/main libjpeg-turbo8 amd64 1.3.0-0ubuntu2 [104 kB] Get:27 http://ftpmaster.internal/ubuntu/ xenial/main libpaper1 amd64 1.1.24+nmu2ubuntu3 [13.4 kB] Get:28 http://ftpmaster.internal/ubuntu/ xenial/main libpcrecpp0v5 amd64 2:8.35-7.1ubuntu1 [15.4 kB] Get:29 http://ftpmaster.internal/ubuntu/ xenial/main libsigsegv2 amd64 2.10-4 [14.1 kB] Get:30 http://ftpmaster.internal/ubuntu/ xenial/main libsm6 amd64 2:1.2.2-1 [15.8 kB] Get:31 http://ftpmaster.internal/ubuntu/ xenial/main libtcl8.6 amd64 8.6.4+dfsg-2ubuntu1 [878 kB] Get:32 http://ftpmaster.internal/ubuntu/ xenial/main libjbig0 amd64 2.1-3.1 [26.6 kB] Get:33 http://ftpmaster.internal/ubuntu/ xenial/main libjpeg8 amd64 8c-2ubuntu8 [2194 B] Get:34 http://ftpmaster.internal/ubuntu/ xenial/main libtiff5 amd64 4.0.3-12.3ubuntu2 [146 kB] Get:35 http://ftpmaster.internal/ubuntu/ xenial/main libxrender1 amd64 1:0.9.9-0ubuntu1 [18.5 kB] Get:36 http://ftpmaster.internal/ubuntu/ xenial/main libxft2 amd64 2.3.2-1 [36.1 kB] Get:37 http://ftpmaster.internal/ubuntu/ xenial/main libxss1 amd64 1:1.2.2-1 [8582 B] Get:38 http://ftpmaster.internal/ubuntu/ xenial/main libtk8.6 amd64 8.6.4+dfsg-2ubuntu1 [699 kB] Get:39 http://ftpmaster.internal/ubuntu/ xenial/main libunistring0 amd64 0.9.3-5.2ubuntu1 [279 kB] Get:40 http://ftpmaster.internal/ubuntu/ xenial/main libpython2.7-minimal amd64 2.7.10-4ubuntu1 [337 kB] Get:41 http://ftpmaster.internal/ubuntu/ xenial/main python2.7-minimal amd64 2.7.10-4ubuntu1 [1262 kB] Get:42 http://ftpmaster.internal/ubuntu/ xenial/main python-minimal amd64 2.7.9-1 [28.2 kB] Get:43 http://ftpmaster.internal/ubuntu/ xenial/main mime-support all 3.58ubuntu1 [31.6 kB] Get:44 http://ftpmaster.internal/ubuntu/ xenial/main libpython2.7-stdlib amd64 2.7.10-4ubuntu1 [1795 kB] Get:45 http://ftpmaster.internal/ubuntu/ xenial/main python2.7 amd64 2.7.10-4ubuntu1 [210 kB] Get:46 http://ftpmaster.internal/ubuntu/ xenial/main libpython-stdlib amd64 2.7.9-1 [7754 B] Get:47 http://ftpmaster.internal/ubuntu/ xenial/main python amd64 2.7.9-1 [137 kB] Get:48 http://ftpmaster.internal/ubuntu/ xenial/main libmagic1 amd64 1:5.22+15-2ubuntu1 [211 kB] Get:49 http://ftpmaster.internal/ubuntu/ xenial/main file amd64 1:5.22+15-2ubuntu1 [20.7 kB] Get:50 http://ftpmaster.internal/ubuntu/ xenial/main libencode-locale-perl all 1.05-1 [12.3 kB] Get:51 http://ftpmaster.internal/ubuntu/ xenial/main libhtml-tagset-perl all 3.20-2 [13.5 kB] Get:52 http://ftpmaster.internal/ubuntu/ xenial/main liburi-perl all 1.69-1 [84.5 kB] Get:53 http://ftpmaster.internal/ubuntu/ xenial/main libhtml-parser-perl amd64 3.71-2 [90.4 kB] Get:54 http://ftpmaster.internal/ubuntu/ xenial/main libtimedate-perl all 2.3000-2 [37.5 kB] Get:55 http://ftpmaster.internal/ubuntu/ xenial/main libhttp-date-perl all 6.02-1 [10.4 kB] Get:56 http://ftpmaster.internal/ubuntu/ xenial/main libio-html-perl all 1.001-1 [14.9 kB] Get:57 http://ftpmaster.internal/ubuntu/ xenial/main liblwp-mediatypes-perl all 6.02-1 [21.7 kB] Get:58 http://ftpmaster.internal/ubuntu/ xenial/main libhttp-message-perl all 6.11-1 [74.3 kB] Get:59 http://ftpmaster.internal/ubuntu/ xenial/main netbase all 5.3 [12.9 kB] Get:60 http://ftpmaster.internal/ubuntu/ xenial/main gettext-base amd64 0.19.4-1ubuntu3 [48.3 kB] Get:61 http://ftpmaster.internal/ubuntu/ xenial/main m4 amd64 1.4.17-4 [193 kB] Get:62 http://ftpmaster.internal/ubuntu/ xenial/main autoconf all 2.69-9 [321 kB] Get:63 http://ftpmaster.internal/ubuntu/ xenial/main autotools-dev all 20150820.1 [39.8 kB] Get:64 http://ftpmaster.internal/ubuntu/ xenial/main automake all 1:1.15-1ubuntu1 [511 kB] Get:65 http://ftpmaster.internal/ubuntu/ xenial/main gettext amd64 0.19.4-1ubuntu3 [857 kB] Get:66 http://ftpmaster.internal/ubuntu/ xenial/main intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:67 http://ftpmaster.internal/ubuntu/ xenial/main po-debconf all 1.0.18 [234 kB] Get:68 http://ftpmaster.internal/ubuntu/ xenial/main debhelper all 9.20151005ubuntu1 [729 kB] Get:69 http://ftpmaster.internal/ubuntu/ xenial/main libfile-listing-perl all 6.04-1 [9774 B] Get:70 http://ftpmaster.internal/ubuntu/ xenial/main libhtml-tree-perl all 5.03-2 [197 kB] Get:71 http://ftpmaster.internal/ubuntu/ xenial/main libhttp-cookies-perl all 6.01-1 [17.2 kB] Get:72 http://ftpmaster.internal/ubuntu/ xenial/main libhttp-negotiate-perl all 6.00-2 [13.4 kB] Get:73 http://ftpmaster.internal/ubuntu/ xenial/main libnet-ssleay-perl amd64 1.72-1 [262 kB] Get:74 http://ftpmaster.internal/ubuntu/ xenial/main libio-socket-ssl-perl all 2.020-1 [151 kB] Get:75 http://ftpmaster.internal/ubuntu/ xenial/main libnet-http-perl all 6.09-1 [24.0 kB] Get:76 http://ftpmaster.internal/ubuntu/ xenial/main liblwp-protocol-https-perl all 6.06-2 [8682 B] Get:77 http://ftpmaster.internal/ubuntu/ xenial/main libwww-robotrules-perl all 6.01-1 [14.1 kB] Get:78 http://ftpmaster.internal/ubuntu/ xenial/main libwww-perl all 6.13-1 [146 kB] Get:79 http://ftpmaster.internal/ubuntu/ xenial/main libxml-parser-perl amd64 2.41-3 [201 kB] Get:80 http://ftpmaster.internal/ubuntu/ xenial/main intltool all 0.51.0-1 [44.7 kB] Get:81 http://ftpmaster.internal/ubuntu/ xenial/main dh-translations all 122 [21.8 kB] Get:82 http://ftpmaster.internal/ubuntu/ xenial/main python-scour all 0.26-3ubuntu1 [40.4 kB] Get:83 http://ftpmaster.internal/ubuntu/ xenial/main cdbs all 0.4.130ubuntu2 [42.8 kB] Get:84 http://ftpmaster.internal/ubuntu/ xenial/main libgfortran3 amd64 5.2.1-23ubuntu1 [258 kB] Get:85 http://ftpmaster.internal/ubuntu/ xenial/main libgfortran-5-dev amd64 5.2.1-23ubuntu1 [289 kB] Get:86 http://ftpmaster.internal/ubuntu/ xenial/main gfortran-5 amd64 5.2.1-23ubuntu1 [27.3 MB] Get:87 http://ftpmaster.internal/ubuntu/ xenial/main gfortran amd64 4:5.2.1-3ubuntu1 [1274 B] Get:88 http://ftpmaster.internal/ubuntu/ xenial/main libblas-common amd64 1.2.20110419-10 [3058 B] Get:89 http://ftpmaster.internal/ubuntu/ xenial/main libblas3 amd64 1.2.20110419-10 [161 kB] Get:90 http://ftpmaster.internal/ubuntu/ xenial/main libblas-dev amd64 1.2.20110419-10 [156 kB] Get:91 http://ftpmaster.internal/ubuntu/ xenial/main libbz2-dev amd64 1.0.6-8 [29.1 kB] Get:92 http://ftpmaster.internal/ubuntu/ xenial/main libpixman-1-0 amd64 0.33.2-2 [231 kB] Get:93 http://ftpmaster.internal/ubuntu/ xenial/main libxcb-render0 amd64 1.11-0ubuntu1 [11.6 kB] Get:94 http://ftpmaster.internal/ubuntu/ xenial/main libxcb-shm0 amd64 1.11-0ubuntu1 [5766 B] Get:95 http://ftpmaster.internal/ubuntu/ xenial/main libcairo2 amd64 1.14.2-2ubuntu2 [553 kB] Get:96 http://ftpmaster.internal/ubuntu/ xenial/main libcurl3 amd64 7.43.0-1ubuntu2 [186 kB] Get:97 http://ftpmaster.internal/ubuntu/ xenial/main libdatrie1 amd64 0.2.10-1 [17.0 kB] Get:98 http://ftpmaster.internal/ubuntu/ xenial/main libharfbuzz0b amd64 1.0.1-1build2 [140 kB] Get:99 http://ftpmaster.internal/ubuntu/ xenial/main libjpeg-turbo8-dev amd64 1.3.0-0ubuntu2 [242 kB] Get:100 http://ftpmaster.internal/ubuntu/ xenial/main libjpeg8-dev amd64 8c-2ubuntu8 [1552 B] Get:101 http://ftpmaster.internal/ubuntu/ xenial/main libjpeg-dev amd64 8c-2ubuntu8 [1546 B] Get:102 http://ftpmaster.internal/ubuntu/ xenial/main liblapack3 amd64 3.5.0-4 [1844 kB] Get:103 http://ftpmaster.internal/ubuntu/ xenial/main liblapack-dev amd64 3.5.0-4 [1874 kB] Get:104 http://ftpmaster.internal/ubuntu/ xenial/main libtinfo-dev amd64 5.9+20150516-2ubuntu1 [77.2 kB] Get:105 http://ftpmaster.internal/ubuntu/ xenial/main libncurses5-dev amd64 5.9+20150516-2ubuntu1 [176 kB] Get:106 http://ftpmaster.internal/ubuntu/ xenial/main libthai-data all 0.1.22-3 [130 kB] Get:107 http://ftpmaster.internal/ubuntu/ xenial/main libthai0 amd64 0.1.22-3 [16.7 kB] Get:108 http://ftpmaster.internal/ubuntu/ xenial/main libpango-1.0-0 amd64 1.38.1-1 [148 kB] Get:109 http://ftpmaster.internal/ubuntu/ xenial/main libpangoft2-1.0-0 amd64 1.38.1-1 [33.3 kB] Get:110 http://ftpmaster.internal/ubuntu/ xenial/main libpangocairo-1.0-0 amd64 1.38.1-1 [20.5 kB] Get:111 http://ftpmaster.internal/ubuntu/ xenial/main libpaper-utils amd64 1.1.24+nmu2ubuntu3 [8244 B] Get:112 http://ftpmaster.internal/ubuntu/ xenial/main libpcre16-3 amd64 2:8.35-7.1ubuntu1 [141 kB] Get:113 http://ftpmaster.internal/ubuntu/ xenial/main libpcre32-3 amd64 2:8.35-7.1ubuntu1 [133 kB] Get:114 http://ftpmaster.internal/ubuntu/ xenial/main libpcre3-dev amd64 2:8.35-7.1ubuntu1 [520 kB] Get:115 http://ftpmaster.internal/ubuntu/ xenial/main zlib1g-dev amd64 1:1.2.8.dfsg-2ubuntu4 [168 kB] Get:116 http://ftpmaster.internal/ubuntu/ xenial/main libpng12-dev amd64 1.2.51-0ubuntu3 [208 kB] Get:117 http://ftpmaster.internal/ubuntu/ xenial/main libreadline6-dev amd64 6.3-8ubuntu1 [123 kB] Get:118 http://ftpmaster.internal/ubuntu/ xenial/main libreadline-dev amd64 6.3-8ubuntu1 [1040 B] Get:119 http://ftpmaster.internal/ubuntu/ xenial/main libxt6 amd64 1:1.1.5-0ubuntu1 [160 kB] Get:120 http://ftpmaster.internal/ubuntu/ xenial/main zip amd64 3.0-11 [158 kB] Get:121 http://ftpmaster.internal/ubuntu/ xenial/main unzip amd64 6.0-19ubuntu1 [159 kB] Get:122 http://ftpmaster.internal/ubuntu/ xenial/main xdg-utils all 1.1.0~rc3+git20150907-1ubuntu2 [58.3 kB] Get:123 http://ftpmaster.internal/ubuntu/ xenial/universe r-base-core amd64 3.2.2-1 [20.4 MB] Get:124 http://ftpmaster.internal/ubuntu/ xenial/main liblzma-dev amd64 5.1.1alpha+20120614-2ubuntu2 [137 kB] Get:125 http://ftpmaster.internal/ubuntu/ xenial/universe r-base-dev all 3.2.2-1 [4348 B] Get:126 http://ftpmaster.internal/ubuntu/ xenial/universe r-bioc-biocgenerics all 0.14.0-1 [439 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 82.1 MB in 20s (4036 kB/s) Selecting previously unselected package libasprintf0v5:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11719 files and directories currently installed.) Preparing to unpack .../libasprintf0v5_0.19.4-1ubuntu3_amd64.deb ... Unpacking libasprintf0v5:amd64 (0.19.4-1ubuntu3) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../libxau6_1%3a1.0.8-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.8-1) ... Selecting previously unselected package libxdmcp6:amd64. 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13979 files and directories currently installed.) Preparing to unpack .../python_2.7.9-1_amd64.deb ... Unpacking python (2.7.9-1) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../libmagic1_1%3a5.22+15-2ubuntu1_amd64.deb ... Unpacking libmagic1:amd64 (1:5.22+15-2ubuntu1) ... Selecting previously unselected package file. Preparing to unpack .../file_1%3a5.22+15-2ubuntu1_amd64.deb ... 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Setting up bsdmainutils (9.0.6ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpipeline1:amd64 (1.4.1-1) ... Setting up man-db (2.7.4-1) ... Not building database; man-db/auto-update is not 'true'. Setting up fonts-dejavu-core (2.35-1) ... Setting up ucf (3.0030) ... Setting up fontconfig-config (2.11.1-0ubuntu6) ... Setting up libexpat1:amd64 (2.1.0-7) ... Setting up libfreetype6:amd64 (2.5.2-4ubuntu2) ... Setting up libfontconfig1:amd64 (2.11.1-0ubuntu6) ... Setting up fontconfig (2.11.1-0ubuntu6) ... Regenerating fonts cache... done. Setting up libglib2.0-0:amd64 (2.46.1-1) ... No schema files found: doing nothing. Setting up libicu55:amd64 (55.1-4ubuntu1) ... Setting up libxml2:amd64 (2.9.2+zdfsg1-4) ... Setting up libcroco3:amd64 (0.6.8-3) ... Setting up libgraphite2-3:amd64 (1.2.4-3ubuntu1) ... Setting up x11-common (1:7.7+7ubuntu4) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:amd64 (2:1.0.9-1) ... Setting up libjpeg-turbo8:amd64 (1.3.0-0ubuntu2) ... Setting up libpaper1:amd64 (1.1.24+nmu2ubuntu3) ... Creating config file /etc/papersize with new version Setting up libpcrecpp0v5:amd64 (2:8.35-7.1ubuntu1) ... Setting up libsigsegv2:amd64 (2.10-4) ... Setting up libsm6:amd64 (2:1.2.2-1) ... Setting up libtcl8.6:amd64 (8.6.4+dfsg-2ubuntu1) ... Setting up libjbig0:amd64 (2.1-3.1) ... Setting up libjpeg8:amd64 (8c-2ubuntu8) ... Setting up libtiff5:amd64 (4.0.3-12.3ubuntu2) ... Setting up libxrender1:amd64 (1:0.9.9-0ubuntu1) ... Setting up libxft2:amd64 (2.3.2-1) ... Setting up libxss1:amd64 (1:1.2.2-1) ... Setting up libtk8.6:amd64 (8.6.4+dfsg-2ubuntu1) ... Setting up libunistring0:amd64 (0.9.3-5.2ubuntu1) ... Setting up mime-support (3.58ubuntu1) ... Setting up libpython2.7-stdlib:amd64 (2.7.10-4ubuntu1) ... Setting up python2.7 (2.7.10-4ubuntu1) ... Setting up libpython-stdlib:amd64 (2.7.9-1) ... Setting up python (2.7.9-1) ... Setting up libmagic1:amd64 (1:5.22+15-2ubuntu1) ... Setting up file (1:5.22+15-2ubuntu1) ... Setting up libencode-locale-perl (1.05-1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up liburi-perl (1.69-1) ... Setting up libhtml-parser-perl (3.71-2) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libio-html-perl (1.001-1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up libhttp-message-perl (6.11-1) ... Setting up netbase (5.3) ... Setting up gettext-base (0.19.4-1ubuntu3) ... Setting up m4 (1.4.17-4) ... Setting up autoconf (2.69-9) ... Setting up autotools-dev (20150820.1) ... Setting up automake (1:1.15-1ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.4-1ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up po-debconf (1.0.18) ... Setting up debhelper (9.20151005ubuntu1) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libhtml-tree-perl (5.03-2) ... Setting up libhttp-cookies-perl (6.01-1) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libnet-ssleay-perl (1.72-1) ... Setting up libio-socket-ssl-perl (2.020-1) ... Setting up libnet-http-perl (6.09-1) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up python-scour (0.26-3ubuntu1) ... Setting up libgfortran3:amd64 (5.2.1-23ubuntu1) ... Setting up libgfortran-5-dev:amd64 (5.2.1-23ubuntu1) ... Setting up gfortran-5 (5.2.1-23ubuntu1) ... Setting up gfortran (4:5.2.1-3ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libblas-common (1.2.20110419-10) ... Setting up libblas3 (1.2.20110419-10) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up libblas-dev (1.2.20110419-10) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode Setting up libbz2-dev:amd64 (1.0.6-8) ... Setting up libpixman-1-0:amd64 (0.33.2-2) ... Setting up libxcb-render0:amd64 (1.11-0ubuntu1) ... Setting up libxcb-shm0:amd64 (1.11-0ubuntu1) ... Setting up libcairo2:amd64 (1.14.2-2ubuntu2) ... Setting up libcurl3:amd64 (7.43.0-1ubuntu2) ... Setting up libdatrie1:amd64 (0.2.10-1) ... Setting up libharfbuzz0b:amd64 (1.0.1-1build2) ... Setting up libjpeg-turbo8-dev:amd64 (1.3.0-0ubuntu2) ... Setting up libjpeg8-dev:amd64 (8c-2ubuntu8) ... Setting up libjpeg-dev:amd64 (8c-2ubuntu8) ... Setting up liblapack3 (3.5.0-4) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up liblapack-dev (3.5.0-4) ... update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode Setting up libtinfo-dev:amd64 (5.9+20150516-2ubuntu1) ... Setting up libncurses5-dev:amd64 (5.9+20150516-2ubuntu1) ... Setting up libthai-data (0.1.22-3) ... Setting up libthai0:amd64 (0.1.22-3) ... Setting up libpango-1.0-0:amd64 (1.38.1-1) ... Setting up libpangoft2-1.0-0:amd64 (1.38.1-1) ... Setting up libpangocairo-1.0-0:amd64 (1.38.1-1) ... Setting up libpaper-utils (1.1.24+nmu2ubuntu3) ... Setting up libpcre16-3:amd64 (2:8.35-7.1ubuntu1) ... Setting up libpcre32-3:amd64 (2:8.35-7.1ubuntu1) ... Setting up libpcre3-dev:amd64 (2:8.35-7.1ubuntu1) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu4) ... Setting up libpng12-dev:amd64 (1.2.51-0ubuntu3) ... Setting up libreadline6-dev:amd64 (6.3-8ubuntu1) ... Setting up libreadline-dev:amd64 (6.3-8ubuntu1) ... Setting up libxt6:amd64 (1:1.1.5-0ubuntu1) ... Setting up zip (3.0-11) ... Setting up unzip (6.0-19ubuntu1) ... Setting up xdg-utils (1.1.0~rc3+git20150907-1ubuntu2) ... Setting up r-base-core (3.2.2-1) ... Creating config file /etc/R/Renviron with new version Setting up liblzma-dev:amd64 (5.1.1alpha+20120614-2ubuntu2) ... Setting up r-bioc-biocgenerics (0.14.0-1) ... Setting up libwww-perl (6.13-1) ... Setting up libxml-parser-perl (2.41-3) ... Setting up intltool (0.51.0-1) ... Setting up dh-translations (122) ... Setting up cdbs (0.4.130ubuntu2) ... Setting up r-base-dev (3.2.2-1) ... Setting up sbuild-build-depends-r-bioc-biobase-dummy (0.invalid.0) ... Setting up liblwp-protocol-https-perl (6.06-2) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... Processing triggers for systemd (227-2ubuntu1) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.19.0-31-generic amd64 (x86_64) Toolchain package versions: binutils_2.25.51.20151028-0ubuntu1 dpkg-dev_1.18.3ubuntu1 g++-5_5.2.1-23ubuntu1 gcc-5_5.2.1-23ubuntu1 libc6-dev_2.21-0ubuntu4 libstdc++-5-dev_5.2.1-23ubuntu1 libstdc++6_5.2.1-23ubuntu1 linux-libc-dev_4.2.0-16.19 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.20-1 apt_1.0.10.2ubuntu1 apt-transport-https_1.0.10.2ubuntu1 autoconf_2.69-9 automake_1:1.15-1ubuntu1 autotools-dev_20150820.1 base-files_9.4ubuntu2 base-passwd_3.5.38 bash_4.3-14ubuntu1 binutils_2.25.51.20151028-0ubuntu1 bsdmainutils_9.0.6ubuntu1 bsdutils_1:2.27-3ubuntu1 build-essential_12.1ubuntu2 bzip2_1.0.6-8 ca-certificates_20150426ubuntu1 cdbs_0.4.130ubuntu2 coreutils_8.23-4ubuntu2 cpp_4:5.2.1-3ubuntu1 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libitm1_5.2.1-23ubuntu1 libjbig0_2.1-3.1 libjpeg-dev_8c-2ubuntu8 libjpeg-turbo8_1.3.0-0ubuntu2 libjpeg-turbo8-dev_1.3.0-0ubuntu2 libjpeg8_8c-2ubuntu8 libjpeg8-dev_8c-2ubuntu8 libk5crypto3_1.13.2+dfsg-3 libkeyutils1_1.5.9-5ubuntu1 libkmod2_21-1ubuntu1 libkrb5-26-heimdal_1.6~rc2+dfsg-10ubuntu1 libkrb5-3_1.13.2+dfsg-3 libkrb5support0_1.13.2+dfsg-3 liblapack-dev_3.5.0-4 liblapack3_3.5.0-4 libldap-2.4-2_2.4.41+dfsg-1ubuntu2 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblsan0_5.2.1-23ubuntu1 liblwp-mediatypes-perl_6.02-1 liblwp-protocol-https-perl_6.06-2 liblzma-dev_5.1.1alpha+20120614-2ubuntu2 liblzma5_5.1.1alpha+20120614-2ubuntu2 libmagic1_1:5.22+15-2ubuntu1 libmount1_2.27-3ubuntu1 libmpc3_1.0.3-1 libmpfr4_3.1.3-1 libmpx0_5.2.1-23ubuntu1 libncurses5_5.9+20150516-2ubuntu1 libncurses5-dev_5.9+20150516-2ubuntu1 libncursesw5_5.9+20150516-2ubuntu1 libnet-http-perl_6.09-1 libnet-ssleay-perl_1.72-1 libnettle6_3.1.1-4 libnih-dbus1_1.0.3-4ubuntu27 libnih1_1.0.3-4ubuntu27 libp11-kit0_0.23.1-3 libpam-modules_1.1.8-3.1ubuntu3 libpam-modules-bin_1.1.8-3.1ubuntu3 libpam-runtime_1.1.8-3.1ubuntu3 libpam0g_1.1.8-3.1ubuntu3 libpango-1.0-0_1.38.1-1 libpangocairo-1.0-0_1.38.1-1 libpangoft2-1.0-0_1.38.1-1 libpaper-utils_1.1.24+nmu2ubuntu3 libpaper1_1.1.24+nmu2ubuntu3 libpcre16-3_2:8.35-7.1ubuntu1 libpcre3_2:8.35-7.1ubuntu1 libpcre3-dev_2:8.35-7.1ubuntu1 libpcre32-3_2:8.35-7.1ubuntu1 libpcrecpp0v5_2:8.35-7.1ubuntu1 libpipeline1_1.4.1-1 libpixman-1-0_0.33.2-2 libpng12-0_1.2.51-0ubuntu3 libpng12-dev_1.2.51-0ubuntu3 libprocps3_1:3.3.9-1ubuntu8 libpython-stdlib_2.7.9-1 libpython2.7-minimal_2.7.10-4ubuntu1 libpython2.7-stdlib_2.7.10-4ubuntu1 libquadmath0_5.2.1-23ubuntu1 libreadline-dev_6.3-8ubuntu1 libreadline6_6.3-8ubuntu1 libreadline6-dev_6.3-8ubuntu1 libroken18-heimdal_1.6~rc2+dfsg-10ubuntu1 librtmp1_2.4+20150115.gita107cef-1build1 libsasl2-2_2.1.26.dfsg1-14 libsasl2-modules-db_2.1.26.dfsg1-14 libseccomp2_2.2.3-2ubuntu1 libselinux1_2.3-2build1 libsemanage-common_2.3-1build2 libsemanage1_2.3-1build2 libsepol1_2.3-2 libsigsegv2_2.10-4 libslang2_2.3.0-2ubuntu1 libsm6_2:1.2.2-1 libsmartcols1_2.27-3ubuntu1 libsqlite3-0_3.9.1-2 libss2_1.42.12-1ubuntu2 libssl1.0.0_1.0.2d-0ubuntu1 libstdc++-5-dev_5.2.1-23ubuntu1 libstdc++6_5.2.1-23ubuntu1 libsystemd0_227-2ubuntu1 libtasn1-6_4.7-2 libtcl8.6_8.6.4+dfsg-2ubuntu1 libthai-data_0.1.22-3 libthai0_0.1.22-3 libtiff5_4.0.3-12.3ubuntu2 libtimedate-perl_2.3000-2 libtinfo-dev_5.9+20150516-2ubuntu1 libtinfo5_5.9+20150516-2ubuntu1 libtk8.6_8.6.4+dfsg-2ubuntu1 libtsan0_5.2.1-23ubuntu1 libubsan0_5.2.1-23ubuntu1 libudev1_227-2ubuntu1 libunistring0_0.9.3-5.2ubuntu1 liburi-perl_1.69-1 libusb-0.1-4_2:0.1.12-27 libustr-1.0-1_1.0.4-5 libuuid1_2.27-3ubuntu1 libwind0-heimdal_1.6~rc2+dfsg-10ubuntu1 libwww-perl_6.13-1 libwww-robotrules-perl_6.01-1 libx11-6_2:1.6.3-1ubuntu2 libx11-data_2:1.6.3-1ubuntu2 libxau6_1:1.0.8-1 libxcb-render0_1.11-0ubuntu1 libxcb-shm0_1.11-0ubuntu1 libxcb1_1.11-0ubuntu1 libxdmcp6_1:1.1.2-1 libxext6_2:1.3.3-1 libxft2_2.3.2-1 libxml-parser-perl_2.41-3 libxml2_2.9.2+zdfsg1-4 libxrender1_1:0.9.9-0ubuntu1 libxss1_1:1.2.2-1 libxt6_1:1.1.5-0ubuntu1 linux-libc-dev_4.2.0-16.19 lockfile-progs_0.1.17 login_1:4.1.5.1-1.1ubuntu7 lsb-base_4.1+Debian11ubuntu8 m4_1.4.17-4 make_4.0-8.2 man-db_2.7.4-1 mawk_1.3.3-17ubuntu2 mime-support_3.58ubuntu1 mount_2.27-3ubuntu1 multiarch-support_2.21-0ubuntu4 ncurses-base_5.9+20150516-2ubuntu1 ncurses-bin_5.9+20150516-2ubuntu1 netbase_5.3 openssl_1.0.2d-0ubuntu1 optipng_0.7.5-1 passwd_1:4.1.5.1-1.1ubuntu7 patch_2.7.5-1 perl_5.20.2-6 perl-base_5.20.2-6 perl-modules_5.20.2-6 pkg-create-dbgsym_0.70 pkgbinarymangler_122 po-debconf_1.0.18 policyrcd-script-zg2_0.1-2 procps_1:3.3.9-1ubuntu8 python_2.7.9-1 python-minimal_2.7.9-1 python-scour_0.26-3ubuntu1 python2.7_2.7.10-4ubuntu1 python2.7-minimal_2.7.10-4ubuntu1 r-base-core_3.2.2-1 r-base-dev_3.2.2-1 r-bioc-biocgenerics_0.14.0-1 readline-common_6.3-8ubuntu1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-biobase-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 systemd_227-2ubuntu1 systemd-sysv_227-2ubuntu1 sysv-rc_2.88dsf-59.2ubuntu2 sysvinit-utils_2.88dsf-59.2ubuntu2 tar_1.27.1-2 tzdata_2015g-1 ubuntu-keyring_2012.05.19 ucf_3.0030 udev_227-2ubuntu1 unzip_6.0-19ubuntu1 util-linux_2.27-3ubuntu1 x11-common_1:7.7+7ubuntu4 xdg-utils_1.1.0~rc3+git20150907-1ubuntu2 xz-utils_5.1.1alpha+20120614-2ubuntu2 zip_3.0-11 zlib1g_1:1.2.8.dfsg-2ubuntu4 zlib1g-dev_1:1.2.8.dfsg-2ubuntu4 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: Signature made Thu Oct 29 16:24:22 2015 UTC using RSA key ID D1C646D1 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./r-bioc-biobase_2.30.0-1.dsc dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.30.0 dpkg-source: info: unpacking r-bioc-biobase_2.30.0.orig.tar.gz dpkg-source: info: unpacking r-bioc-biobase_2.30.0-1.debian.tar.xz dpkg-source: info: applying exclude_testing_golubEsets.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/«PKGBUILDDIR» SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/«PKGBUILDDIR»' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ───────────────── dpkg-buildpackage: source package r-bioc-biobase dpkg-buildpackage: source version 2.30.0-1 dpkg-buildpackage: source distribution unstable dpkg-source --before-build r-bioc-biobase-2.30.0 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean test -x debian/rules dh_clean if test -d src; then \ find src -regex ".*\.o" | \ xargs --no-run-if-empty -r rm; \ fi rm -f config.log config.status debian/rules build test -x debian/rules mkdir -p "." /usr/share/cdbs/1/rules/buildcore.mk:110: CDBS WARNING: DEB_DH_BUILDDEB_ARGS is deprecated since 0.4.85 fakeroot debian/rules binary test -x debian/rules dh_testroot dh_prep dh_installdirs -A mkdir -p "." /usr/share/cdbs/1/rules/buildcore.mk:110: CDBS WARNING: DEB_DH_BUILDDEB_ARGS is deprecated since 0.4.85 dh_installdirs usr/lib/R/site-library echo "R:Depends=r-base-core (>= 3.2.2-1), r-api-3" >> debian/r-bioc-biobase.substvars if test -f /usr/bin/xvfb-run; then \ xvfb-run -a \ R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-bioc-biobase/usr/lib/R/site-library --clean \ . \ "--built-timestamp=\"Thu, 29 Oct 2015 17:07:09 +0100\"" \ ; \ else \ R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-bioc-biobase/usr/lib/R/site-library \ --clean . \ "--built-timestamp=\"Thu, 29 Oct 2015 17:07:09 +0100\"" \ ; \ fi * installing *source* package 'Biobase' ... ** libs make[1]: Entering directory '/«PKGBUILDDIR»/src' gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Rinit.c -o Rinit.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c anyMissing.c -o anyMissing.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c envir.c -o envir.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c matchpt.c -o matchpt.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c rowMedians.c -o rowMedians.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c sublist_extract.c -o sublist_extract.o gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib/R/lib -lR make[1]: Leaving directory '/«PKGBUILDDIR»/src' make[1]: Entering directory '/«PKGBUILDDIR»/src' make[1]: Leaving directory '/«PKGBUILDDIR»/src' installing to /«PKGBUILDDIR»/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (Biobase) rm -vf /«PKGBUILDDIR»/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \ /«PKGBUILDDIR»/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \ /«PKGBUILDDIR»/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt if test -f debian/overrides; then \ install -d /«PKGBUILDDIR»/debian/r-bioc-biobase/usr/share/lintian/overrides ; \ install -m 0644 debian/overrides \ /«PKGBUILDDIR»/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \ fi Adding cdbs dependencies to debian/r-bioc-biobase.substvars dh_installdirs -pr-bioc-biobase echo "R:Depends=r-base-core (>= 3.2.2~)" >> debian/r-bioc-biobase.substvars dh_installdocs -pr-bioc-biobase ./NEWS dh_installexamples -pr-bioc-biobase dh_installman -pr-bioc-biobase dh_installinfo -pr-bioc-biobase dh_installmenu -pr-bioc-biobase dh_installcron -pr-bioc-biobase dh_installinit -pr-bioc-biobase dh_installdebconf -pr-bioc-biobase dh_installemacsen -pr-bioc-biobase dh_installcatalogs -pr-bioc-biobase dh_installpam -pr-bioc-biobase dh_installlogrotate -pr-bioc-biobase dh_installlogcheck -pr-bioc-biobase dh_installchangelogs -pr-bioc-biobase dh_installudev -pr-bioc-biobase dh_lintian -pr-bioc-biobase dh_bugfiles -pr-bioc-biobase dh_install -pr-bioc-biobase dh_link -pr-bioc-biobase dh_installmime -pr-bioc-biobase dh_installgsettings -pr-bioc-biobase dh_strip -pr-bioc-biobase dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform amd64: r-bioc-biobase dh_strip debug symbol extraction: packages to act on: r-bioc-biobase dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: -is is deprecated; it is without effect dpkg-gencontrol: warning: -ip is deprecated; it is without effect dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package r-bioc-biobase: unused substitution variable ${R:Depends} /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol dh_compress -pr-bioc-biobase dh_fixperms -pr-bioc-biobase dh_makeshlibs -pr-bioc-biobase dh_installdeb -pr-bioc-biobase dh_perl -pr-bioc-biobase dh_shlibdeps -pr-bioc-biobase dh_gencontrol -pr-bioc-biobase dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform amd64: r-bioc-biobase dh_gencontrol debug symbol wrapper: packages to act on: r-bioc-biobase dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: processing package r-bioc-biobase (pkgdir debian/r-bioc-biobase, ddeb package dir debian/r-bioc-biobase-dbgsym) dh_gencontrol debug symbol wrapper: building r-bioc-biobase-dbgsym_2.30.0-1_amd64.ddeb dpkg-deb: building package 'r-bioc-biobase-dbgsym' in '../r-bioc-biobase-dbgsym_2.30.0-1_amd64.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile r-bioc-biobase-dbgsym_2.30.0-1_amd64.ddeb gnu-r extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe # only call dh_scour for packages in main if grep -q '^Component:[[:space:]]*main' /CurrentlyBuilding 2>/dev/null; then dh_scour -pr-bioc-biobase ; fi dh_md5sums -pr-bioc-biobase dh_builddeb -pr-bioc-biobase -- -Z xz INFO: pkgstriptranslations version 122 pkgstriptranslations: processing r-bioc-biobase (in debian/r-bioc-biobase); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-bioc-biobase/DEBIAN/control, package r-bioc-biobase, directory debian/r-bioc-biobase pkgstripfiles: PNG optimization for package r-bioc-biobase took 0 s dpkg-deb: building package 'r-bioc-biobase' in '../r-bioc-biobase_2.30.0-1_amd64.deb'. dpkg-genchanges -b -mLaunchpad Build Daemon >../r-bioc-biobase_2.30.0-1_amd64.changes dpkg-genchanges: binary-only upload (no source code included) dpkg-source --after-build r-bioc-biobase-2.30.0 dpkg-buildpackage: binary-only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20151029-2315 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build Chroot │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ r-bioc-biobase_2.30.0-1_amd64.changes: ────────────────────────────────────── Format: 1.8 Date: Thu, 29 Oct 2015 17:07:09 +0100 Source: r-bioc-biobase Binary: r-bioc-biobase Architecture: amd64 Version: 2.30.0-1 Distribution: xenial-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: r-bioc-biobase - base functions for Bioconductor Changes: r-bioc-biobase (2.30.0-1) unstable; urgency=medium . * New upstream version * Fixed watch file * Drop outdated paragraph from description Checksums-Sha1: 21e4abf4fb58f9a2cc0fcb03c94b6345b30a299d 14272 r-bioc-biobase-dbgsym_2.30.0-1_amd64.ddeb aed739c67189f8f82441b6cc8a47e9d45cdaba31 2000522 r-bioc-biobase_2.30.0-1_amd64.deb Checksums-Sha256: 0758b7ef3c1eb151a7b900e46399a73533bc7f6dddaa020b9524ce90d1795729 14272 r-bioc-biobase-dbgsym_2.30.0-1_amd64.ddeb 495f69a21c5c06ee62e63a5922eabff304b702d440a8c1d3ac517a75f5b71e1a 2000522 r-bioc-biobase_2.30.0-1_amd64.deb Files: aa0280a650f99f2f588c8d5f9c6dae69 14272 gnu-r extra r-bioc-biobase-dbgsym_2.30.0-1_amd64.ddeb d2dccdb5a327fd24b26a4479dbccd998 2000522 gnu-r optional r-bioc-biobase_2.30.0-1_amd64.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ r-bioc-biobase_2.30.0-1_amd64.deb ───────────────────────────────── new debian package, version 2.0. size 2000522 bytes: control archive=4561 bytes. 1050 bytes, 21 lines control 12326 bytes, 128 lines md5sums Package: r-bioc-biobase Version: 2.30.0-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 2641 Depends: libc6 (>= 2.3), r-base-core (>= 3.2.2~), r-bioc-biocgenerics (>= 0.3.2) Section: gnu-r Priority: optional Homepage: http://www.bioconductor.org/packages/release/bioc/html/Biobase.html Description: base functions for Bioconductor Biobase is part of the Bioconductor project, and is used by many other packages. Biobase contains standardized data structures to represent genomic data, and functions that are needed by many other packages or which replace R functions. . Bioconductor is a project to develop innovative software tools for use in computational biology. It is based on the R language. You should already be quite familiar with R before using Bioconductor. 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./usr/share/doc/r-bioc-biobase/NEWS.gz -rw-r--r-- root/root 604 2015-10-29 16:21 ./usr/share/doc/r-bioc-biobase/README.test -rw-r--r-- root/root 998 2015-10-29 16:21 ./usr/share/doc/r-bioc-biobase/changelog.Debian.gz -rw-r--r-- root/root 10747 2015-10-29 16:21 ./usr/share/doc/r-bioc-biobase/copyright ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Not removing build depends: as requested Keeping session: ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: amd64 Build-Space: 8112 Build-Time: 16 Distribution: xenial-proposed Host Architecture: amd64 Install-Time: 53 Job: r-bioc-biobase_2.30.0-1.dsc Machine Architecture: amd64 Package: r-bioc-biobase Package-Time: 70 Source-Version: 2.30.0-1 Space: 8112 Status: successful Version: 2.30.0-1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20151029-2315 Build needed 00:01:10, 8112k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-8219544'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-8219544/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-8219544'] Unmounting chroot for build PACKAGEBUILD-8219544... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-8219544'] Removing build PACKAGEBUILD-8219544