RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux lcy01-33 3.13.0-85-generic #129-Ubuntu SMP Thu Mar 17 20:50:15 UTC 2016 x86_64 Buildd toolchain package versions: launchpad-buildd_139 python-lpbuildd_139 sbuild_0.65.2-1ubuntu2~ubuntu14.04.1~ppa8 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.04.1 bzr_2.6.0+bzr6593-1ubuntu1.5 git-build-recipe_0.3~git201603101733.90b6821~ubuntu14.04.2 git_1:1.9.1-1ubuntu0.3 dpkg-dev_1.17.5ubuntu5.6 python-debian_0.1.27ubuntu1~ubuntu14.04.1~ppa1 qemu-user-static_2.0.0+dfsg-2ubuntu1.22. Syncing the system clock with the buildd NTP service... 8 May 11:14:34 ntpdate[1666]: adjust time server 10.211.37.1 offset 0.096647 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-9708228', '/home/buildd/filecache-default/063eeb43ee0a3186cd7a3c6a3a452f2f4c9a8d95'] Unpacking chroot for build PACKAGEBUILD-9708228 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-9708228'] Mounting chroot for build PACKAGEBUILD-9708228 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-9708228', 'deb http://ftpmaster.internal/ubuntu yakkety main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-security main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-updates main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-9708228 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-9708228', 'amd64'] Updating debian chroot for build PACKAGEBUILD-9708228 Get:1 http://ftpmaster.internal/ubuntu yakkety InRelease [247 kB] Get:2 http://ftpmaster.internal/ubuntu yakkety-security InRelease [92.2 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety-updates InRelease [92.2 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety-proposed InRelease [95.7 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main amd64 Packages [1201 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main Translation-en [568 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/universe amd64 Packages [7632 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/universe Translation-en [4418 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety-security/main amd64 Packages [64 B] Get:10 http://ftpmaster.internal/ubuntu yakkety-security/main Translation-en [64 B] Get:11 http://ftpmaster.internal/ubuntu yakkety-security/universe amd64 Packages [64 B] Get:12 http://ftpmaster.internal/ubuntu yakkety-security/universe Translation-en [64 B] Get:13 http://ftpmaster.internal/ubuntu yakkety-updates/main amd64 Packages [64 B] Get:14 http://ftpmaster.internal/ubuntu yakkety-updates/main Translation-en [64 B] Get:15 http://ftpmaster.internal/ubuntu yakkety-updates/universe amd64 Packages [64 B] Get:16 http://ftpmaster.internal/ubuntu yakkety-updates/universe Translation-en [64 B] Get:17 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 Packages [35.1 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety-proposed/main Translation-en [17.7 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety-proposed/universe amd64 Packages [149 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety-proposed/universe Translation-en [86.3 kB] Fetched 14.6 MB in 2s (5519 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libpng16-16 The following packages will be upgraded: apt apt-transport-https bash binutils bzip2 cpp-5 debconf dmsetup dpkg dpkg-dev g++-5 gcc-5 gcc-5-base gcc-6-base grep hostname init init-system-helpers initscripts libapt-pkg5.0 libasan2 libasn1-8-heimdal libatomic1 libbz2-1.0 libcc1-0 libcilkrts5 libdevmapper1.02.1 libdpkg-perl libgcc-5-dev libgcc1 libgcrypt20 libgomp1 libgpg-error0 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libitm1 libkrb5-26-heimdal liblsan0 libmpx0 libperl5.22 libpng12-0 libquadmath0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libstdc++-5-dev libstdc++6 libsystemd0 libtasn1-6 libtsan0 libubsan0 libudev1 libusb-0.1-4 libwind0-heimdal linux-libc-dev make optipng perl perl-base perl-modules-5.22 policyrcd-script-zg2 sed systemd systemd-sysv sysv-rc sysvinit-utils tar tzdata zlib1g 78 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 100 MB of archives. After this operation, 243 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu yakkety/main amd64 bash amd64 4.3-14ubuntu2 [593 kB] Get:2 http://ftpmaster.internal/ubuntu yakkety/main amd64 dpkg amd64 1.18.4ubuntu2 [2102 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety/main amd64 grep amd64 2.25-1 [153 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety/main amd64 hostname amd64 3.17ubuntu1 [11.7 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main amd64 perl-modules-5.22 all 5.22.2-1 [2642 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main amd64 libperl5.22 amd64 5.22.2-1 [3391 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/main amd64 perl amd64 5.22.2-1 [237 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/main amd64 perl-base amd64 5.22.2-1 [1300 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety/main amd64 bzip2 amd64 1.0.6-8build1 [33.5 kB] Get:10 http://ftpmaster.internal/ubuntu yakkety/main amd64 libbz2-1.0 amd64 1.0.6-8build1 [30.6 kB] Get:11 http://ftpmaster.internal/ubuntu yakkety/main amd64 zlib1g amd64 1:1.2.8.dfsg-2ubuntu5 [51.1 kB] Get:12 http://ftpmaster.internal/ubuntu yakkety/main amd64 init-system-helpers all 1.33ubuntu1 [31.9 kB] Get:13 http://ftpmaster.internal/ubuntu yakkety/main amd64 init amd64 1.33ubuntu1 [4388 B] Get:14 http://ftpmaster.internal/ubuntu yakkety/main amd64 sed amd64 4.2.2-7.1 [140 kB] Get:15 http://ftpmaster.internal/ubuntu yakkety/main amd64 tar amd64 1.28-2.2 [216 kB] Get:16 http://ftpmaster.internal/ubuntu yakkety/main amd64 gcc-6-base amd64 6.1.1-0ubuntu12 [16.1 kB] Get:17 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgcc1 amd64 1:6.1.1-0ubuntu12 [38.6 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety/main amd64 libstdc++6 amd64 6.1.1-0ubuntu12 [399 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety/main amd64 libapt-pkg5.0 amd64 1.2.11 [698 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety/main amd64 apt amd64 1.2.11 [1036 kB] Get:21 http://ftpmaster.internal/ubuntu yakkety/main amd64 debconf all 1.5.59ubuntu1 [136 kB] Get:22 http://ftpmaster.internal/ubuntu yakkety/main amd64 sysvinit-utils amd64 2.88dsf-59.3ubuntu5 [21.8 kB] Get:23 http://ftpmaster.internal/ubuntu yakkety/main amd64 sysv-rc all 2.88dsf-59.3ubuntu5 [18.2 kB] Get:24 http://ftpmaster.internal/ubuntu yakkety/main amd64 initscripts amd64 2.88dsf-59.3ubuntu5 [24.5 kB] Get:25 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgpg-error0 amd64 1.22-1 [34.4 kB] Get:26 http://ftpmaster.internal/ubuntu yakkety/main amd64 libselinux1 amd64 2.5-2 [65.2 kB] Get:27 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsystemd0 amd64 229-5ubuntu1 [210 kB] Get:28 http://ftpmaster.internal/ubuntu yakkety/main amd64 systemd amd64 229-5ubuntu1 [3643 kB] Get:29 http://ftpmaster.internal/ubuntu yakkety/main amd64 systemd-sysv amd64 229-5ubuntu1 [17.8 kB] Get:30 http://ftpmaster.internal/ubuntu yakkety/main amd64 libudev1 amd64 229-5ubuntu1 [60.4 kB] Get:31 http://ftpmaster.internal/ubuntu yakkety/main amd64 libdevmapper1.02.1 amd64 2:1.02.122-1ubuntu1 [148 kB] Get:32 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgcrypt20 amd64 1.7.0-2 [397 kB] Get:33 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsepol1 amd64 2.5-1 [216 kB] Get:34 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libsemanage-common all 2.5-1 [6800 B] Get:35 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libsemanage1 amd64 2.5-1 [80.3 kB] Get:36 http://ftpmaster.internal/ubuntu yakkety/main amd64 libusb-0.1-4 amd64 2:0.1.12-30 [17.2 kB] Get:37 http://ftpmaster.internal/ubuntu yakkety/main amd64 tzdata all 2016d-2 [168 kB] Get:38 http://ftpmaster.internal/ubuntu yakkety/main amd64 libslang2 amd64 2.3.0-2.3ubuntu1 [414 kB] Get:39 http://ftpmaster.internal/ubuntu yakkety/main amd64 libtasn1-6 amd64 4.8-1 [42.5 kB] Get:40 http://ftpmaster.internal/ubuntu yakkety/main amd64 apt-transport-https amd64 1.2.11 [25.7 kB] Get:41 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libroken18-heimdal amd64 1.7~git20160418+dfsg-3 [41.2 kB] Get:42 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libasn1-8-heimdal amd64 1.7~git20160418+dfsg-3 [174 kB] Get:43 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libheimbase1-heimdal amd64 1.7~git20160418+dfsg-3 [29.4 kB] Get:44 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libhcrypto4-heimdal amd64 1.7~git20160418+dfsg-3 [87.9 kB] Get:45 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libwind0-heimdal amd64 1.7~git20160418+dfsg-3 [47.9 kB] Get:46 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libhx509-5-heimdal amd64 1.7~git20160418+dfsg-3 [107 kB] Get:47 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libkrb5-26-heimdal amd64 1.7~git20160418+dfsg-3 [203 kB] Get:48 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libheimntlm0-heimdal amd64 1.7~git20160418+dfsg-3 [15.1 kB] Get:49 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 libgssapi3-heimdal amd64 1.7~git20160418+dfsg-3 [96.6 kB] Get:50 http://ftpmaster.internal/ubuntu yakkety/main amd64 libpng16-16 amd64 1.6.21-4 [172 kB] Get:51 http://ftpmaster.internal/ubuntu yakkety/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-1 [54.2 kB] Get:52 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsasl2-modules-db amd64 2.1.26.dfsg1-15 [14.5 kB] Get:53 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsasl2-2 amd64 2.1.26.dfsg1-15 [48.7 kB] Get:54 http://ftpmaster.internal/ubuntu yakkety/main amd64 binutils amd64 2.26-8ubuntu3 [2441 kB] Get:55 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgomp1 amd64 6.1.1-0ubuntu12 [74.0 kB] Get:56 http://ftpmaster.internal/ubuntu yakkety/main amd64 libitm1 amd64 6.1.1-0ubuntu12 [27.9 kB] Get:57 http://ftpmaster.internal/ubuntu yakkety/main amd64 libatomic1 amd64 6.1.1-0ubuntu12 [9178 B] Get:58 http://ftpmaster.internal/ubuntu yakkety/main amd64 libasan2 amd64 5.3.1-16ubuntu3 [269 kB] Get:59 http://ftpmaster.internal/ubuntu yakkety/main amd64 liblsan0 amd64 6.1.1-0ubuntu12 [116 kB] Get:60 http://ftpmaster.internal/ubuntu yakkety/main amd64 libtsan0 amd64 6.1.1-0ubuntu12 [260 kB] Get:61 http://ftpmaster.internal/ubuntu yakkety/main amd64 libubsan0 amd64 6.1.1-0ubuntu12 [107 kB] Get:62 http://ftpmaster.internal/ubuntu yakkety/main amd64 libcilkrts5 amd64 6.1.1-0ubuntu12 [40.9 kB] Get:63 http://ftpmaster.internal/ubuntu yakkety/main amd64 libmpx0 amd64 5.3.1-16ubuntu3 [9752 B] Get:64 http://ftpmaster.internal/ubuntu yakkety/main amd64 libquadmath0 amd64 6.1.1-0ubuntu12 [132 kB] Get:65 http://ftpmaster.internal/ubuntu yakkety/main amd64 g++-5 amd64 5.3.1-16ubuntu3 [32.4 MB] Get:66 http://ftpmaster.internal/ubuntu yakkety/main amd64 gcc-5 amd64 5.3.1-16ubuntu3 [8564 kB] Get:67 http://ftpmaster.internal/ubuntu yakkety/main amd64 libstdc++-5-dev amd64 5.3.1-16ubuntu3 [1406 kB] Get:68 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgcc-5-dev amd64 5.3.1-16ubuntu3 [2238 kB] Get:69 http://ftpmaster.internal/ubuntu yakkety/main amd64 libcc1-0 amd64 6.1.1-0ubuntu12 [31.1 kB] Get:70 http://ftpmaster.internal/ubuntu yakkety/main amd64 cpp-5 amd64 5.3.1-16ubuntu3 [30.1 MB] Get:71 http://ftpmaster.internal/ubuntu yakkety/main amd64 gcc-5-base amd64 5.3.1-16ubuntu3 [17.4 kB] Get:72 http://ftpmaster.internal/ubuntu yakkety/main amd64 dmsetup amd64 2:1.02.122-1ubuntu1 [72.0 kB] Get:73 http://ftpmaster.internal/ubuntu yakkety/main amd64 dpkg-dev all 1.18.4ubuntu2 [584 kB] Get:74 http://ftpmaster.internal/ubuntu yakkety/main amd64 libdpkg-perl all 1.18.4ubuntu2 [195 kB] Get:75 http://ftpmaster.internal/ubuntu yakkety/main amd64 make amd64 4.1-9 [154 kB] Get:76 http://ftpmaster.internal/ubuntu yakkety/universe amd64 libpng12-0 amd64 1.2.54-6ubuntu1 [116 kB] Get:77 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 linux-libc-dev amd64 4.4.0-22.39 [837 kB] Get:78 http://ftpmaster.internal/ubuntu yakkety/main amd64 optipng amd64 0.7.6-1build1 [81.9 kB] Get:79 http://ftpmaster.internal/ubuntu yakkety/main amd64 policyrcd-script-zg2 all 0.1-3 [5610 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 100 MB in 3s (27.8 MB/s) (Reading database ... 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Setting up perl-modules-5.22 (5.22.2-1) ... Setting up libperl5.22:amd64 (5.22.2-1) ... Setting up perl (5.22.2-1) ... Setting up bzip2 (1.0.6-8build1) ... Setting up sysv-rc (2.88dsf-59.3ubuntu5) ... Setting up initscripts (2.88dsf-59.3ubuntu5) ... Installing new version of config file /etc/init.d/ondemand ... Setting up tzdata (2016d-2) ... Current default time zone: 'Etc/UTC' Local time is now: Sun May 8 11:15:06 UTC 2016. Universal Time is now: Sun May 8 11:15:06 UTC 2016. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libslang2:amd64 (2.3.0-2.3ubuntu1) ... Setting up libtasn1-6:amd64 (4.8-1) ... Setting up apt-transport-https (1.2.11) ... Setting up libroken18-heimdal:amd64 (1.7~git20160418+dfsg-3) ... Setting up libasn1-8-heimdal:amd64 (1.7~git20160418+dfsg-3) ... Setting up libheimbase1-heimdal:amd64 (1.7~git20160418+dfsg-3) ... Setting up libhcrypto4-heimdal:amd64 (1.7~git20160418+dfsg-3) ... Setting up libwind0-heimdal:amd64 (1.7~git20160418+dfsg-3) ... Setting up libhx509-5-heimdal:amd64 (1.7~git20160418+dfsg-3) ... Setting up libkrb5-26-heimdal:amd64 (1.7~git20160418+dfsg-3) ... Setting up libheimntlm0-heimdal:amd64 (1.7~git20160418+dfsg-3) ... Setting up libgssapi3-heimdal:amd64 (1.7~git20160418+dfsg-3) ... Setting up libpng16-16:amd64 (1.6.21-4) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1) ... Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-15) ... Setting up libsasl2-2:amd64 (2.1.26.dfsg1-15) ... Setting up binutils (2.26-8ubuntu3) ... Setting up libgomp1:amd64 (6.1.1-0ubuntu12) ... Setting up libitm1:amd64 (6.1.1-0ubuntu12) ... Setting up libatomic1:amd64 (6.1.1-0ubuntu12) ... Setting up gcc-5-base:amd64 (5.3.1-16ubuntu3) ... Setting up libasan2:amd64 (5.3.1-16ubuntu3) ... Setting up liblsan0:amd64 (6.1.1-0ubuntu12) ... Setting up libtsan0:amd64 (6.1.1-0ubuntu12) ... Setting up libubsan0:amd64 (6.1.1-0ubuntu12) ... Setting up libcilkrts5:amd64 (6.1.1-0ubuntu12) ... Setting up libmpx0:amd64 (5.3.1-16ubuntu3) ... Setting up libquadmath0:amd64 (6.1.1-0ubuntu12) ... Setting up cpp-5 (5.3.1-16ubuntu3) ... Setting up libcc1-0:amd64 (6.1.1-0ubuntu12) ... Setting up libgcc-5-dev:amd64 (5.3.1-16ubuntu3) ... Setting up gcc-5 (5.3.1-16ubuntu3) ... Setting up libstdc++-5-dev:amd64 (5.3.1-16ubuntu3) ... Setting up g++-5 (5.3.1-16ubuntu3) ... Setting up dmsetup (2:1.02.122-1ubuntu1) ... Setting up libdpkg-perl (1.18.4ubuntu2) ... Setting up make (4.1-9) ... Setting up dpkg-dev (1.18.4ubuntu2) ... Setting up libpng12-0:amd64 (1.2.54-6ubuntu1) ... Setting up linux-libc-dev:amd64 (4.4.0-22.39) ... Setting up optipng (0.7.6-1build1) ... Setting up policyrcd-script-zg2 (0.1-3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Processing triggers for systemd (229-5ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-9708228', 'amd64', 'yakkety-proposed', '-c', 'chroot:autobuild', '--arch=amd64', '--dist=yakkety-proposed', '--purge=never', '--nolog', '-A', 'r-bioc-biobase_2.32.0-1.dsc'] Initiating build PACKAGEBUILD-9708228 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 3.13.0-85-generic #129-Ubuntu SMP Thu Mar 17 20:50:15 UTC 2016 x86_64 sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on lcy01-33.buildd ╔══════════════════════════════════════════════════════════════════════════════╗ ║ r-bioc-biobase 2.32.0-1 (amd64) 08 May 2016 11:15 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: r-bioc-biobase Version: 2.32.0-1 Source Version: 2.32.0-1 Distribution: yakkety-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/r-bioc-biobase-BHhgcO/r-bioc-biobase-2.32.0' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/r-bioc-biobase-BHhgcO' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-9708228/chroot-autobuild' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Local sources ───────────── r-bioc-biobase_2.32.0-1.dsc exists in .; copying to chroot Check architectures ─────────────────── Check dependencies ────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-WuoPqF/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/«BUILDDIR»/resolver-WuoPqF/apt_archive ./ InRelease Get:2 copy:/«BUILDDIR»/resolver-WuoPqF/apt_archive ./ Release [2119 B] Ign:3 copy:/«BUILDDIR»/resolver-WuoPqF/apt_archive ./ Release.gpg Get:4 copy:/«BUILDDIR»/resolver-WuoPqF/apt_archive ./ Sources [208 B] Get:5 copy:/«BUILDDIR»/resolver-WuoPqF/apt_archive ./ Packages [525 B] Fetched 2852 B in 0s (0 B/s) Reading package lists... W: The repository 'copy:/«BUILDDIR»/resolver-WuoPqF/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 776 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Get:1 copy:/«BUILDDIR»/resolver-WuoPqF/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [776 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 776 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12176 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), cdbs, debhelper (>= 9), r-base-dev, r-bioc-biocgenerics (>= 0.3.2) Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), cdbs, debhelper (>= 9), r-base-dev, r-bioc-biocgenerics (>= 0.3.2) dpkg-deb: building package 'sbuild-build-depends-r-bioc-biobase-dummy' in '/«BUILDDIR»/resolver-ZIki4q/apt_archive/sbuild-build-depends-r-bioc-biobase-dummy.deb'. Ign:1 copy:/«BUILDDIR»/resolver-ZIki4q/apt_archive ./ InRelease Get:2 copy:/«BUILDDIR»/resolver-ZIki4q/apt_archive ./ Release [2119 B] Ign:3 copy:/«BUILDDIR»/resolver-ZIki4q/apt_archive ./ Release.gpg Get:4 copy:/«BUILDDIR»/resolver-ZIki4q/apt_archive ./ Sources [446 B] Get:5 copy:/«BUILDDIR»/resolver-ZIki4q/apt_archive ./ Packages [709 B] Fetched 3274 B in 0s (0 B/s) Reading package lists... W: The repository 'copy:/«BUILDDIR»/resolver-ZIki4q/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install r-bioc-biobase build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cdbs debhelper dh-autoreconf dh-strip-nondeterminism dh-translations file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-5 groff-base intltool intltool-debian libarchive-zip-perl libasprintf0v5 libblas-common libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libcurl3 libdatrie1 libencode-locale-perl libexpat1 libfile-listing-perl libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgfortran-5-dev libgfortran3 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libicu57 libio-html-perl libio-socket-ssl-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic1 libncurses5-dev libnet-http-perl libnet-ssleay-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline-dev libreadline6-dev libsigsegv2 libsm6 libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev libtk8.6 libtool libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2 libxrender1 libxss1 libxt6 m4 man-db mime-support netbase po-debconf python python-minimal python-pkg-resources python-scour python-six python2.7 python2.7-minimal r-base-core r-base-dev r-bioc-biocgenerics ucf unzip x11-common xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation devscripts dh-make gettext-doc gfortran-multilib gfortran-doc gfortran-5-multilib gfortran-5-doc libgfortran3-dbg groff liblapack-doc-man liblapack-doc libdata-dump-perl libcrypt-ssleay-perl liblzma-doc ncurses-doc readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk libauthen-ntlm-perl less www-browser libmail-box-perl python-doc python-tk python-setuptools python-rsvg python-cairo python2.7-doc binfmt-support ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo gvfs-bin Recommended packages: curl | wget | lynx-cur libasprintf-dev libgettextpo-dev bzip2-doc libglib2.0-data shared-mime-info xdg-user-dirs libhtml-format-perl libpng-tools libltdl-dev libhtml-form-perl libhttp-daemon-perl libmailtools-perl xml-core ifupdown libmail-sendmail-perl r-recommended r-doc-html libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cdbs debhelper dh-autoreconf dh-strip-nondeterminism dh-translations file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-5 groff-base intltool intltool-debian libarchive-zip-perl libasprintf0v5 libblas-common libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libcurl3 libdatrie1 libencode-locale-perl libexpat1 libfile-listing-perl libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgfortran-5-dev libgfortran3 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libicu57 libio-html-perl libio-socket-ssl-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic1 libncurses5-dev libnet-http-perl libnet-ssleay-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline-dev libreadline6-dev libsigsegv2 libsm6 libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev libtk8.6 libtool libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2 libxrender1 libxss1 libxt6 m4 man-db mime-support netbase po-debconf python python-minimal python-pkg-resources python-scour python-six python2.7 python2.7-minimal r-base-core r-base-dev r-bioc-biocgenerics sbuild-build-depends-r-bioc-biobase-dummy ucf unzip x11-common xdg-utils zip zlib1g-dev 0 upgraded, 135 newly installed, 0 to remove and 0 not upgraded. Need to get 87.6 MB of archives. After this operation, 318 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-r-bioc-biobase-dummy Authentication warning overridden. Get:1 copy:/«BUILDDIR»/resolver-ZIki4q/apt_archive ./ sbuild-build-depends-r-bioc-biobase-dummy 0.invalid.0 [952 B] Get:2 http://ftpmaster.internal/ubuntu yakkety/main amd64 libxau6 amd64 1:1.0.8-1 [8376 B] Get:3 http://ftpmaster.internal/ubuntu yakkety/main amd64 libxdmcp6 amd64 1:1.1.2-1.1 [11.0 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety/main amd64 libxcb1 amd64 1.11.1-1ubuntu1 [40.0 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main amd64 libx11-data all 2:1.6.3-1ubuntu2 [113 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main amd64 libx11-6 amd64 2:1.6.3-1ubuntu2 [571 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/main amd64 libxext6 amd64 2:1.3.3-1 [29.4 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/main amd64 groff-base amd64 1.22.3-7 [1151 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety/main amd64 bsdmainutils amd64 9.0.6ubuntu3 [174 kB] Get:10 http://ftpmaster.internal/ubuntu yakkety/main amd64 libpipeline1 amd64 1.4.1-2 [24.6 kB] Get:11 http://ftpmaster.internal/ubuntu yakkety/main amd64 man-db amd64 2.7.5-1 [854 kB] Get:12 http://ftpmaster.internal/ubuntu yakkety/main amd64 fonts-dejavu-core all 2.35-1 [1039 kB] Get:13 http://ftpmaster.internal/ubuntu yakkety/main amd64 ucf all 3.0036 [52.9 kB] Get:14 http://ftpmaster.internal/ubuntu yakkety/main amd64 fontconfig-config all 2.11.94-0ubuntu1 [49.9 kB] Get:15 http://ftpmaster.internal/ubuntu yakkety/main amd64 libexpat1 amd64 2.1.1-1 [70.9 kB] Get:16 http://ftpmaster.internal/ubuntu yakkety/main amd64 libfreetype6 amd64 2.6.3-3ubuntu1 [320 kB] Get:17 http://ftpmaster.internal/ubuntu yakkety/main amd64 libfontconfig1 amd64 2.11.94-0ubuntu1 [131 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety/main amd64 fontconfig amd64 2.11.94-0ubuntu1 [178 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety/main amd64 x11-common all 1:7.7+13ubuntu3 [22.4 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety/main amd64 libice6 amd64 2:1.0.9-1 [39.2 kB] Get:21 http://ftpmaster.internal/ubuntu yakkety/main amd64 libjpeg-turbo8 amd64 1.4.2-0ubuntu3 [111 kB] Get:22 http://ftpmaster.internal/ubuntu yakkety/main amd64 libpcrecpp0v5 amd64 2:8.38-3.1 [15.2 kB] Get:23 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsm6 amd64 2:1.2.2-1 [15.8 kB] Get:24 http://ftpmaster.internal/ubuntu yakkety/main amd64 libunistring0 amd64 0.9.3-5.2ubuntu1 [279 kB] Get:25 http://ftpmaster.internal/ubuntu yakkety/main amd64 libxrender1 amd64 1:0.9.9-0ubuntu1 [18.5 kB] Get:26 http://ftpmaster.internal/ubuntu yakkety/main amd64 libxft2 amd64 2.3.2-1 [36.1 kB] Get:27 http://ftpmaster.internal/ubuntu yakkety/main amd64 libxss1 amd64 1:1.2.2-1 [8582 B] Get:28 http://ftpmaster.internal/ubuntu yakkety/main amd64 libpython2.7-minimal amd64 2.7.11-8 [335 kB] Get:29 http://ftpmaster.internal/ubuntu yakkety/main amd64 python2.7-minimal amd64 2.7.11-8 [1320 kB] Get:30 http://ftpmaster.internal/ubuntu yakkety/main amd64 python-minimal amd64 2.7.11-1 [28.2 kB] Get:31 http://ftpmaster.internal/ubuntu yakkety/main amd64 mime-support all 3.59ubuntu1 [31.0 kB] Get:32 http://ftpmaster.internal/ubuntu yakkety/main amd64 libpython2.7-stdlib amd64 2.7.11-8 [1854 kB] Get:33 http://ftpmaster.internal/ubuntu yakkety/main amd64 python2.7 amd64 2.7.11-8 [220 kB] Get:34 http://ftpmaster.internal/ubuntu yakkety/main amd64 libpython-stdlib amd64 2.7.11-1 [7656 B] Get:35 http://ftpmaster.internal/ubuntu yakkety/main amd64 python amd64 2.7.11-1 [137 kB] Get:36 http://ftpmaster.internal/ubuntu yakkety/main amd64 libjbig0 amd64 2.1-3.1 [26.6 kB] Get:37 http://ftpmaster.internal/ubuntu yakkety/main amd64 libmagic1 amd64 1:5.25-2ubuntu1 [216 kB] Get:38 http://ftpmaster.internal/ubuntu yakkety/main amd64 file amd64 1:5.25-2ubuntu1 [21.2 kB] Get:39 http://ftpmaster.internal/ubuntu yakkety/main amd64 netbase all 5.3 [12.9 kB] Get:40 http://ftpmaster.internal/ubuntu yakkety/main amd64 libasprintf0v5 amd64 0.19.7-2ubuntu3 [6412 B] Get:41 http://ftpmaster.internal/ubuntu yakkety/main amd64 gettext-base amd64 0.19.7-2ubuntu3 [47.9 kB] Get:42 http://ftpmaster.internal/ubuntu yakkety/main amd64 libglib2.0-0 amd64 2.48.0-1ubuntu4 [1117 kB] Get:43 http://ftpmaster.internal/ubuntu yakkety/main amd64 libicu57 amd64 57.1-1 [7690 kB] Get:44 http://ftpmaster.internal/ubuntu yakkety/main amd64 libxml2 amd64 2.9.3+dfsg1-1build1 [695 kB] Get:45 http://ftpmaster.internal/ubuntu yakkety/main amd64 libsigsegv2 amd64 2.10-5 [14.1 kB] Get:46 http://ftpmaster.internal/ubuntu yakkety/main amd64 m4 amd64 1.4.17-5 [195 kB] Get:47 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 autoconf all 2.69-10 [321 kB] Get:48 http://ftpmaster.internal/ubuntu yakkety-proposed/main amd64 autotools-dev all 20160430.1 [39.6 kB] Get:49 http://ftpmaster.internal/ubuntu yakkety/main amd64 automake all 1:1.15-4ubuntu1 [510 kB] Get:50 http://ftpmaster.internal/ubuntu yakkety/main amd64 autopoint all 0.19.7-2ubuntu3 [406 kB] Get:51 http://ftpmaster.internal/ubuntu yakkety/main amd64 libcroco3 amd64 0.6.11-1 [81.6 kB] Get:52 http://ftpmaster.internal/ubuntu yakkety/main amd64 gettext amd64 0.19.7-2ubuntu3 [1076 kB] Get:53 http://ftpmaster.internal/ubuntu yakkety/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:54 http://ftpmaster.internal/ubuntu yakkety/main amd64 po-debconf all 1.0.19 [234 kB] Get:55 http://ftpmaster.internal/ubuntu yakkety/main amd64 libarchive-zip-perl all 1.57-1 [84.0 kB] Get:56 http://ftpmaster.internal/ubuntu yakkety/main amd64 libfile-stripnondeterminism-perl all 0.016-1 [11.0 kB] Get:57 http://ftpmaster.internal/ubuntu yakkety/main amd64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:58 http://ftpmaster.internal/ubuntu yakkety/main amd64 dh-strip-nondeterminism all 0.016-1 [4858 B] Get:59 http://ftpmaster.internal/ubuntu yakkety/main amd64 libtool all 2.4.6-0.1 [193 kB] Get:60 http://ftpmaster.internal/ubuntu yakkety/main amd64 dh-autoreconf all 12 [15.8 kB] Get:61 http://ftpmaster.internal/ubuntu yakkety/main amd64 debhelper all 9.20160403ubuntu1 [711 kB] Get:62 http://ftpmaster.internal/ubuntu yakkety/main amd64 liburi-perl all 1.71-1 [76.9 kB] Get:63 http://ftpmaster.internal/ubuntu yakkety/main amd64 libencode-locale-perl all 1.05-1 [12.3 kB] Get:64 http://ftpmaster.internal/ubuntu yakkety/main amd64 libhttp-date-perl all 6.02-1 [10.4 kB] Get:65 http://ftpmaster.internal/ubuntu yakkety/main amd64 libfile-listing-perl all 6.04-1 [9774 B] Get:66 http://ftpmaster.internal/ubuntu yakkety/main amd64 libhtml-tagset-perl all 3.20-2 [13.5 kB] Get:67 http://ftpmaster.internal/ubuntu yakkety/main amd64 libhtml-parser-perl amd64 3.72-1 [86.1 kB] Get:68 http://ftpmaster.internal/ubuntu yakkety/main amd64 libhtml-tree-perl all 5.03-2 [197 kB] Get:69 http://ftpmaster.internal/ubuntu yakkety/main amd64 libio-html-perl all 1.001-1 [14.9 kB] Get:70 http://ftpmaster.internal/ubuntu yakkety/main amd64 liblwp-mediatypes-perl all 6.02-1 [21.7 kB] Get:71 http://ftpmaster.internal/ubuntu yakkety/main amd64 libhttp-message-perl all 6.11-1 [74.3 kB] Get:72 http://ftpmaster.internal/ubuntu yakkety/main amd64 libhttp-cookies-perl all 6.01-1 [17.2 kB] Get:73 http://ftpmaster.internal/ubuntu yakkety/main amd64 libhttp-negotiate-perl all 6.00-2 [13.4 kB] Get:74 http://ftpmaster.internal/ubuntu yakkety/main amd64 libnet-ssleay-perl amd64 1.74-1 [259 kB] Get:75 http://ftpmaster.internal/ubuntu yakkety/main amd64 libio-socket-ssl-perl all 2.027-1 [160 kB] Get:76 http://ftpmaster.internal/ubuntu yakkety/main amd64 libnet-http-perl all 6.09-1 [24.0 kB] Get:77 http://ftpmaster.internal/ubuntu yakkety/main amd64 liblwp-protocol-https-perl all 6.06-2 [8682 B] Get:78 http://ftpmaster.internal/ubuntu yakkety/main amd64 libwww-robotrules-perl all 6.01-1 [14.1 kB] Get:79 http://ftpmaster.internal/ubuntu yakkety/main amd64 libwww-perl all 6.15-1 [146 kB] Get:80 http://ftpmaster.internal/ubuntu yakkety/main amd64 libxml-parser-perl amd64 2.44-1build1 [200 kB] Get:81 http://ftpmaster.internal/ubuntu yakkety/main amd64 intltool all 0.51.0-2 [44.7 kB] Get:82 http://ftpmaster.internal/ubuntu yakkety/main amd64 dh-translations all 129 [22.1 kB] Get:83 http://ftpmaster.internal/ubuntu yakkety/main amd64 python-six all 1.10.0-3 [10.9 kB] Get:84 http://ftpmaster.internal/ubuntu yakkety/main amd64 python-pkg-resources all 20.10.1-1 [109 kB] Get:85 http://ftpmaster.internal/ubuntu yakkety/main amd64 python-scour all 0.32-1 [42.7 kB] Get:86 http://ftpmaster.internal/ubuntu yakkety/main amd64 cdbs all 0.4.130ubuntu2 [42.8 kB] Get:87 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgfortran3 amd64 6.1.1-0ubuntu12 [270 kB] Get:88 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgfortran-5-dev amd64 5.3.1-16ubuntu3 [295 kB] Get:89 http://ftpmaster.internal/ubuntu yakkety/main amd64 gfortran-5 amd64 5.3.1-16ubuntu3 [31.0 MB] Get:90 http://ftpmaster.internal/ubuntu yakkety/main amd64 gfortran amd64 4:5.3.1-1ubuntu1 [1288 B] Get:91 http://ftpmaster.internal/ubuntu yakkety/main amd64 libblas-common amd64 3.6.0-2ubuntu2 [5342 B] Get:92 http://ftpmaster.internal/ubuntu yakkety/main amd64 libblas3 amd64 3.6.0-2ubuntu2 [147 kB] Get:93 http://ftpmaster.internal/ubuntu yakkety/main amd64 libblas-dev amd64 3.6.0-2ubuntu2 [153 kB] Get:94 http://ftpmaster.internal/ubuntu yakkety/main amd64 libbz2-dev amd64 1.0.6-8build1 [29.3 kB] Get:95 http://ftpmaster.internal/ubuntu yakkety/main amd64 libpixman-1-0 amd64 0.33.6-1 [231 kB] Get:96 http://ftpmaster.internal/ubuntu yakkety/main amd64 libxcb-render0 amd64 1.11.1-1ubuntu1 [11.4 kB] Get:97 http://ftpmaster.internal/ubuntu yakkety/main amd64 libxcb-shm0 amd64 1.11.1-1ubuntu1 [5588 B] Get:98 http://ftpmaster.internal/ubuntu yakkety/main amd64 libcairo2 amd64 1.14.6-1build1 [555 kB] Get:99 http://ftpmaster.internal/ubuntu yakkety/main amd64 libcurl3 amd64 7.47.0-1ubuntu2 [185 kB] Get:100 http://ftpmaster.internal/ubuntu yakkety/main amd64 libdatrie1 amd64 0.2.10-2 [17.3 kB] Get:101 http://ftpmaster.internal/ubuntu yakkety/main amd64 libgraphite2-3 amd64 1.3.6-1ubuntu1 [70.8 kB] Get:102 http://ftpmaster.internal/ubuntu yakkety/main amd64 libharfbuzz0b amd64 1.2.6-2 [180 kB] Get:103 http://ftpmaster.internal/ubuntu yakkety/main amd64 libjpeg-turbo8-dev amd64 1.4.2-0ubuntu3 [254 kB] Get:104 http://ftpmaster.internal/ubuntu yakkety/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B] Get:105 http://ftpmaster.internal/ubuntu yakkety/main amd64 libjpeg8-dev amd64 8c-2ubuntu8 [1552 B] Get:106 http://ftpmaster.internal/ubuntu yakkety/main amd64 libjpeg-dev amd64 8c-2ubuntu8 [1546 B] Get:107 http://ftpmaster.internal/ubuntu yakkety/main amd64 liblapack3 amd64 3.6.0-2ubuntu2 [1938 kB] Get:108 http://ftpmaster.internal/ubuntu yakkety/main amd64 liblapack-dev amd64 3.6.0-2ubuntu2 [1948 kB] Get:109 http://ftpmaster.internal/ubuntu yakkety/main amd64 libtinfo-dev amd64 6.0+20160213-1ubuntu1 [77.4 kB] Get:110 http://ftpmaster.internal/ubuntu yakkety/main amd64 libncurses5-dev amd64 6.0+20160213-1ubuntu1 [175 kB] Get:111 http://ftpmaster.internal/ubuntu yakkety/main amd64 libthai-data all 0.1.24-2 [131 kB] Get:112 http://ftpmaster.internal/ubuntu yakkety/main amd64 libthai0 amd64 0.1.24-2 [17.3 kB] Get:113 http://ftpmaster.internal/ubuntu yakkety/main amd64 libpango-1.0-0 amd64 1.40.1-1 [149 kB] Get:114 http://ftpmaster.internal/ubuntu yakkety/main amd64 libpangoft2-1.0-0 amd64 1.40.1-1 [33.1 kB] Get:115 http://ftpmaster.internal/ubuntu yakkety/main amd64 libpangocairo-1.0-0 amd64 1.40.1-1 [20.6 kB] Get:116 http://ftpmaster.internal/ubuntu yakkety/main amd64 libpaper1 amd64 1.1.24+nmu4ubuntu1 [13.7 kB] Get:117 http://ftpmaster.internal/ubuntu yakkety/main amd64 libpaper-utils amd64 1.1.24+nmu4ubuntu1 [8276 B] Get:118 http://ftpmaster.internal/ubuntu yakkety/main amd64 libpcre16-3 amd64 2:8.38-3.1 [144 kB] Get:119 http://ftpmaster.internal/ubuntu yakkety/main amd64 libpcre32-3 amd64 2:8.38-3.1 [136 kB] Get:120 http://ftpmaster.internal/ubuntu yakkety/main amd64 libpcre3-dev amd64 2:8.38-3.1 [525 kB] Get:121 http://ftpmaster.internal/ubuntu yakkety/main amd64 zlib1g-dev amd64 1:1.2.8.dfsg-2ubuntu5 [168 kB] Get:122 http://ftpmaster.internal/ubuntu yakkety/main amd64 libpng-dev amd64 1.6.21-4 [140 kB] Get:123 http://ftpmaster.internal/ubuntu yakkety/main amd64 libreadline6-dev amd64 6.3-8ubuntu2 [124 kB] Get:124 http://ftpmaster.internal/ubuntu yakkety/main amd64 libreadline-dev amd64 6.3-8ubuntu2 [992 B] Get:125 http://ftpmaster.internal/ubuntu yakkety/main amd64 libtcl8.6 amd64 8.6.5+dfsg-2 [875 kB] Get:126 http://ftpmaster.internal/ubuntu yakkety/main amd64 libtiff5 amd64 4.0.6-1 [144 kB] Get:127 http://ftpmaster.internal/ubuntu yakkety/main amd64 libtk8.6 amd64 8.6.5-1 [693 kB] Get:128 http://ftpmaster.internal/ubuntu yakkety/main amd64 libxt6 amd64 1:1.1.5-0ubuntu1 [160 kB] Get:129 http://ftpmaster.internal/ubuntu yakkety/main amd64 zip amd64 3.0-11 [158 kB] Get:130 http://ftpmaster.internal/ubuntu yakkety/main amd64 unzip amd64 6.0-20ubuntu1 [158 kB] Get:131 http://ftpmaster.internal/ubuntu yakkety/main amd64 xdg-utils all 1.1.1-1ubuntu1 [59.9 kB] Get:132 http://ftpmaster.internal/ubuntu yakkety/universe amd64 r-base-core amd64 3.3.0-1 [20.8 MB] Get:133 http://ftpmaster.internal/ubuntu yakkety/main amd64 liblzma-dev amd64 5.1.1alpha+20120614-2ubuntu2 [137 kB] Get:134 http://ftpmaster.internal/ubuntu yakkety/universe amd64 r-base-dev all 3.3.0-1 [4356 B] Get:135 http://ftpmaster.internal/ubuntu yakkety/universe amd64 r-bioc-biocgenerics all 0.16.1-1 [474 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 87.6 MB in 2s (43.6 MB/s) Selecting previously unselected package libxau6:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12176 files and directories currently installed.) Preparing to unpack .../libxau6_1%3a1.0.8-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.8-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../libxdmcp6_1%3a1.1.2-1.1_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-1.1) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../libxcb1_1.11.1-1ubuntu1_amd64.deb ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13984 files and directories currently installed.) Preparing to unpack .../python_2.7.11-1_amd64.deb ... Unpacking python (2.7.11-1) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../libjbig0_2.1-3.1_amd64.deb ... Unpacking libjbig0:amd64 (2.1-3.1) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../libmagic1_1%3a5.25-2ubuntu1_amd64.deb ... Unpacking libmagic1:amd64 (1:5.25-2ubuntu1) ... 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Setting up libx11-data (2:1.6.3-1ubuntu2) ... Setting up libx11-6:amd64 (2:1.6.3-1ubuntu2) ... Setting up libxext6:amd64 (2:1.3.3-1) ... Setting up groff-base (1.22.3-7) ... Setting up bsdmainutils (9.0.6ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpipeline1:amd64 (1.4.1-2) ... Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up fonts-dejavu-core (2.35-1) ... Setting up ucf (3.0036) ... Setting up fontconfig-config (2.11.94-0ubuntu1) ... Setting up libexpat1:amd64 (2.1.1-1) ... Setting up libfreetype6:amd64 (2.6.3-3ubuntu1) ... Setting up libfontconfig1:amd64 (2.11.94-0ubuntu1) ... Setting up fontconfig (2.11.94-0ubuntu1) ... Regenerating fonts cache... done. Setting up x11-common (1:7.7+13ubuntu3) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:amd64 (2:1.0.9-1) ... Setting up libjpeg-turbo8:amd64 (1.4.2-0ubuntu3) ... Setting up libpcrecpp0v5:amd64 (2:8.38-3.1) ... Setting up libsm6:amd64 (2:1.2.2-1) ... Setting up libunistring0:amd64 (0.9.3-5.2ubuntu1) ... Setting up libxrender1:amd64 (1:0.9.9-0ubuntu1) ... Setting up libxft2:amd64 (2.3.2-1) ... Setting up libxss1:amd64 (1:1.2.2-1) ... Setting up mime-support (3.59ubuntu1) ... Setting up libpython2.7-stdlib:amd64 (2.7.11-8) ... Setting up python2.7 (2.7.11-8) ... Setting up libpython-stdlib:amd64 (2.7.11-1) ... Setting up python (2.7.11-1) ... Setting up libjbig0:amd64 (2.1-3.1) ... Setting up libmagic1:amd64 (1:5.25-2ubuntu1) ... Setting up file (1:5.25-2ubuntu1) ... Setting up netbase (5.3) ... Setting up libasprintf0v5:amd64 (0.19.7-2ubuntu3) ... Setting up gettext-base (0.19.7-2ubuntu3) ... Setting up libglib2.0-0:amd64 (2.48.0-1ubuntu4) ... No schema files found: doing nothing. Setting up libicu57:amd64 (57.1-1) ... Setting up libxml2:amd64 (2.9.3+dfsg1-1build1) ... Setting up libsigsegv2:amd64 (2.10-5) ... Setting up m4 (1.4.17-5) ... Setting up autoconf (2.69-10) ... Setting up autotools-dev (20160430.1) ... Setting up automake (1:1.15-4ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up autopoint (0.19.7-2ubuntu3) ... Setting up libcroco3:amd64 (0.6.11-1) ... Setting up gettext (0.19.7-2ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up po-debconf (1.0.19) ... Setting up libarchive-zip-perl (1.57-1) ... Setting up libfile-stripnondeterminism-perl (0.016-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libtool (2.4.6-0.1) ... Setting up liburi-perl (1.71-1) ... Setting up libencode-locale-perl (1.05-1) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.72-1) ... Setting up libhtml-tree-perl (5.03-2) ... Setting up libio-html-perl (1.001-1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up libhttp-message-perl (6.11-1) ... Setting up libhttp-cookies-perl (6.01-1) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libnet-ssleay-perl (1.74-1) ... Setting up libio-socket-ssl-perl (2.027-1) ... Setting up libnet-http-perl (6.09-1) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up python-six (1.10.0-3) ... Setting up python-pkg-resources (20.10.1-1) ... Setting up python-scour (0.32-1) ... Setting up libgfortran3:amd64 (6.1.1-0ubuntu12) ... Setting up libgfortran-5-dev:amd64 (5.3.1-16ubuntu3) ... Setting up gfortran-5 (5.3.1-16ubuntu3) ... Setting up gfortran (4:5.3.1-1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libblas-common (3.6.0-2ubuntu2) ... Setting up libblas3 (3.6.0-2ubuntu2) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up libblas-dev (3.6.0-2ubuntu2) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode Setting up libbz2-dev:amd64 (1.0.6-8build1) ... Setting up libpixman-1-0:amd64 (0.33.6-1) ... Setting up libxcb-render0:amd64 (1.11.1-1ubuntu1) ... Setting up libxcb-shm0:amd64 (1.11.1-1ubuntu1) ... Setting up libcairo2:amd64 (1.14.6-1build1) ... Setting up libcurl3:amd64 (7.47.0-1ubuntu2) ... Setting up libdatrie1:amd64 (0.2.10-2) ... Setting up libgraphite2-3:amd64 (1.3.6-1ubuntu1) ... Setting up libharfbuzz0b:amd64 (1.2.6-2) ... Setting up libjpeg-turbo8-dev:amd64 (1.4.2-0ubuntu3) ... Setting up libjpeg8:amd64 (8c-2ubuntu8) ... Setting up libjpeg8-dev:amd64 (8c-2ubuntu8) ... Setting up libjpeg-dev:amd64 (8c-2ubuntu8) ... Setting up liblapack3 (3.6.0-2ubuntu2) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up liblapack-dev (3.6.0-2ubuntu2) ... update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode Setting up libtinfo-dev:amd64 (6.0+20160213-1ubuntu1) ... Setting up libncurses5-dev:amd64 (6.0+20160213-1ubuntu1) ... Setting up libthai-data (0.1.24-2) ... Setting up libthai0:amd64 (0.1.24-2) ... Setting up libpango-1.0-0:amd64 (1.40.1-1) ... Setting up libpangoft2-1.0-0:amd64 (1.40.1-1) ... Setting up libpangocairo-1.0-0:amd64 (1.40.1-1) ... Setting up libpaper1:amd64 (1.1.24+nmu4ubuntu1) ... Creating config file /etc/papersize with new version Setting up libpaper-utils (1.1.24+nmu4ubuntu1) ... Setting up libpcre16-3:amd64 (2:8.38-3.1) ... Setting up libpcre32-3:amd64 (2:8.38-3.1) ... Setting up libpcre3-dev:amd64 (2:8.38-3.1) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu5) ... Setting up libpng-dev:amd64 (1.6.21-4) ... Setting up libreadline6-dev:amd64 (6.3-8ubuntu2) ... Setting up libreadline-dev:amd64 (6.3-8ubuntu2) ... Setting up libtcl8.6:amd64 (8.6.5+dfsg-2) ... Setting up libtiff5:amd64 (4.0.6-1) ... Setting up libtk8.6:amd64 (8.6.5-1) ... Setting up libxt6:amd64 (1:1.1.5-0ubuntu1) ... Setting up zip (3.0-11) ... Setting up unzip (6.0-20ubuntu1) ... Setting up xdg-utils (1.1.1-1ubuntu1) ... Setting up r-base-core (3.3.0-1) ... Creating config file /etc/R/Renviron with new version Setting up liblzma-dev:amd64 (5.1.1alpha+20120614-2ubuntu2) ... Setting up r-bioc-biocgenerics (0.16.1-1) ... Setting up dh-autoreconf (12) ... Setting up libwww-perl (6.15-1) ... Setting up libxml-parser-perl (2.44-1build1) ... Setting up intltool (0.51.0-2) ... Setting up debhelper (9.20160403ubuntu1) ... Setting up liblwp-protocol-https-perl (6.06-2) ... Setting up dh-translations (129) ... Setting up cdbs (0.4.130ubuntu2) ... Setting up r-base-dev (3.3.0-1) ... Setting up sbuild-build-depends-r-bioc-biobase-dummy (0.invalid.0) ... Setting up dh-strip-nondeterminism (0.016-1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Processing triggers for systemd (229-5ubuntu1) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.13.0-85-generic amd64 (x86_64) Toolchain package versions: binutils_2.26-8ubuntu3 dpkg-dev_1.18.4ubuntu2 g++-5_5.3.1-16ubuntu3 gcc-5_5.3.1-16ubuntu3 libc6-dev_2.23-0ubuntu3 libstdc++-5-dev_5.3.1-16ubuntu3 libstdc++6_6.1.1-0ubuntu12 linux-libc-dev_4.4.0-22.39 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.20-1 apt_1.2.11 apt-transport-https_1.2.11 autoconf_2.69-10 automake_1:1.15-4ubuntu1 autopoint_0.19.7-2ubuntu3 autotools-dev_20160430.1 base-files_9.6ubuntu1 base-passwd_3.5.39 bash_4.3-14ubuntu2 binutils_2.26-8ubuntu3 bsdmainutils_9.0.6ubuntu3 bsdutils_1:2.27.1-6ubuntu3 build-essential_12.1ubuntu2 bzip2_1.0.6-8build1 ca-certificates_20160104ubuntu1 cdbs_0.4.130ubuntu2 coreutils_8.25-2ubuntu2 cpp_4:5.3.1-1ubuntu1 cpp-5_5.3.1-16ubuntu3 dash_0.5.8-2.1ubuntu2 debconf_1.5.59ubuntu1 debhelper_9.20160403ubuntu1 debianutils_4.7 dh-autoreconf_12 dh-strip-nondeterminism_0.016-1 dh-translations_129 diffutils_1:3.3-3 dmsetup_2:1.02.122-1ubuntu1 dpkg_1.18.4ubuntu2 dpkg-dev_1.18.4ubuntu2 e2fslibs_1.42.13-1ubuntu1 e2fsprogs_1.42.13-1ubuntu1 fakeroot_1.20.2-1ubuntu1 file_1:5.25-2ubuntu1 findutils_4.6.0+git+20160126-2 fontconfig_2.11.94-0ubuntu1 fontconfig-config_2.11.94-0ubuntu1 fonts-dejavu-core_2.35-1 g++_4:5.3.1-1ubuntu1 g++-5_5.3.1-16ubuntu3 gcc_4:5.3.1-1ubuntu1 gcc-5_5.3.1-16ubuntu3 gcc-5-base_5.3.1-16ubuntu3 gcc-6-base_6.1.1-0ubuntu12 gettext_0.19.7-2ubuntu3 gettext-base_0.19.7-2ubuntu3 gfortran_4:5.3.1-1ubuntu1 gfortran-5_5.3.1-16ubuntu3 gnupg_1.4.20-1ubuntu3 gpgv_1.4.20-1ubuntu3 grep_2.25-1 groff-base_1.22.3-7 gzip_1.6-4ubuntu1 hostname_3.17ubuntu1 init_1.33ubuntu1 init-system-helpers_1.33ubuntu1 initscripts_2.88dsf-59.3ubuntu5 insserv_1.14.0-5ubuntu3 intltool_0.51.0-2 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libencode-locale-perl_1.05-1 libexpat1_2.1.1-1 libfakeroot_1.20.2-1ubuntu1 libfdisk1_2.27.1-6ubuntu3 libffi6_3.2.1-4 libfile-listing-perl_6.04-1 libfile-stripnondeterminism-perl_0.016-1 libfontconfig1_2.11.94-0ubuntu1 libfreetype6_2.6.3-3ubuntu1 libgcc-5-dev_5.3.1-16ubuntu3 libgcc1_1:6.1.1-0ubuntu12 libgcrypt20_1.7.0-2 libgdbm3_1.8.3-13.1 libgfortran-5-dev_5.3.1-16ubuntu3 libgfortran3_6.1.1-0ubuntu12 libglib2.0-0_2.48.0-1ubuntu4 libgmp10_2:6.1.0+dfsg-2 libgnutls30_3.4.10-4ubuntu1 libgomp1_6.1.1-0ubuntu12 libgpg-error0_1.22-1 libgraphite2-3_1.3.6-1ubuntu1 libgssapi-krb5-2_1.13.2+dfsg-5 libgssapi3-heimdal_1.7~git20160418+dfsg-3 libharfbuzz0b_1.2.6-2 libhcrypto4-heimdal_1.7~git20160418+dfsg-3 libheimbase1-heimdal_1.7~git20160418+dfsg-3 libheimntlm0-heimdal_1.7~git20160418+dfsg-3 libhogweed4_3.2-1 libhtml-parser-perl_3.72-1 libhtml-tagset-perl_3.20-2 libhtml-tree-perl_5.03-2 libhttp-cookies-perl_6.01-1 libhttp-date-perl_6.02-1 libhttp-message-perl_6.11-1 libhttp-negotiate-perl_6.00-2 libhx509-5-heimdal_1.7~git20160418+dfsg-3 libice6_2:1.0.9-1 libicu57_57.1-1 libidn11_1.32-3ubuntu1 libio-html-perl_1.001-1 libio-socket-ssl-perl_2.027-1 libisl15_0.16.1-1 libitm1_6.1.1-0ubuntu12 libjbig0_2.1-3.1 libjpeg-dev_8c-2ubuntu8 libjpeg-turbo8_1.4.2-0ubuntu3 libjpeg-turbo8-dev_1.4.2-0ubuntu3 libjpeg8_8c-2ubuntu8 libjpeg8-dev_8c-2ubuntu8 libk5crypto3_1.13.2+dfsg-5 libkeyutils1_1.5.9-8ubuntu1 libkmod2_22-1ubuntu4 libkrb5-26-heimdal_1.7~git20160418+dfsg-3 libkrb5-3_1.13.2+dfsg-5 libkrb5support0_1.13.2+dfsg-5 liblapack-dev_3.6.0-2ubuntu2 liblapack3_3.6.0-2ubuntu2 libldap-2.4-2_2.4.42+dfsg-2ubuntu3 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblsan0_6.1.1-0ubuntu12 liblwp-mediatypes-perl_6.02-1 liblwp-protocol-https-perl_6.06-2 liblz4-1_0.0~r131-2ubuntu2 liblzma-dev_5.1.1alpha+20120614-2ubuntu2 liblzma5_5.1.1alpha+20120614-2ubuntu2 libmagic1_1:5.25-2ubuntu1 libmount1_2.27.1-6ubuntu3 libmpc3_1.0.3-1 libmpfr4_3.1.4-1 libmpx0_5.3.1-16ubuntu3 libncurses5_6.0+20160213-1ubuntu1 libncurses5-dev_6.0+20160213-1ubuntu1 libncursesw5_6.0+20160213-1ubuntu1 libnet-http-perl_6.09-1 libnet-ssleay-perl_1.74-1 libnettle6_3.2-1 libp11-kit0_0.23.2-3 libpam-modules_1.1.8-3.2ubuntu2 libpam-modules-bin_1.1.8-3.2ubuntu2 libpam-runtime_1.1.8-3.2ubuntu2 libpam0g_1.1.8-3.2ubuntu2 libpango-1.0-0_1.40.1-1 libpangocairo-1.0-0_1.40.1-1 libpangoft2-1.0-0_1.40.1-1 libpaper-utils_1.1.24+nmu4ubuntu1 libpaper1_1.1.24+nmu4ubuntu1 libpcre16-3_2:8.38-3.1 libpcre3_2:8.38-3.1 libpcre3-dev_2:8.38-3.1 libpcre32-3_2:8.38-3.1 libpcrecpp0v5_2:8.38-3.1 libperl5.22_5.22.2-1 libpipeline1_1.4.1-2 libpixman-1-0_0.33.6-1 libpng-dev_1.6.21-4 libpng12-0_1.2.54-6ubuntu1 libpng16-16_1.6.21-4 libprocps4_2:3.3.10-4ubuntu2 libpython-stdlib_2.7.11-1 libpython2.7-minimal_2.7.11-8 libpython2.7-stdlib_2.7.11-8 libquadmath0_6.1.1-0ubuntu12 libreadline-dev_6.3-8ubuntu2 libreadline6_6.3-8ubuntu2 libreadline6-dev_6.3-8ubuntu2 libroken18-heimdal_1.7~git20160418+dfsg-3 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.26.dfsg1-15 libsasl2-modules-db_2.1.26.dfsg1-15 libseccomp2_2.2.3-3ubuntu3 libselinux1_2.5-2 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libslang2_2.3.0-2.3ubuntu1 libsm6_2:1.2.2-1 libsmartcols1_2.27.1-6ubuntu3 libsqlite3-0_3.11.0-1ubuntu1 libss2_1.42.13-1ubuntu1 libssl1.0.0_1.0.2g-1ubuntu4 libstdc++-5-dev_5.3.1-16ubuntu3 libstdc++6_6.1.1-0ubuntu12 libsystemd0_229-5ubuntu1 libtasn1-6_4.8-1 libtcl8.6_8.6.5+dfsg-2 libthai-data_0.1.24-2 libthai0_0.1.24-2 libtiff5_4.0.6-1 libtimedate-perl_2.3000-2 libtinfo-dev_6.0+20160213-1ubuntu1 libtinfo5_6.0+20160213-1ubuntu1 libtk8.6_8.6.5-1 libtool_2.4.6-0.1 libtsan0_6.1.1-0ubuntu12 libubsan0_6.1.1-0ubuntu12 libudev1_229-5ubuntu1 libunistring0_0.9.3-5.2ubuntu1 liburi-perl_1.71-1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-6ubuntu3 libwind0-heimdal_1.7~git20160418+dfsg-3 libwww-perl_6.15-1 libwww-robotrules-perl_6.01-1 libx11-6_2:1.6.3-1ubuntu2 libx11-data_2:1.6.3-1ubuntu2 libxau6_1:1.0.8-1 libxcb-render0_1.11.1-1ubuntu1 libxcb-shm0_1.11.1-1ubuntu1 libxcb1_1.11.1-1ubuntu1 libxdmcp6_1:1.1.2-1.1 libxext6_2:1.3.3-1 libxft2_2.3.2-1 libxml-parser-perl_2.44-1build1 libxml2_2.9.3+dfsg1-1build1 libxrender1_1:0.9.9-0ubuntu1 libxss1_1:1.2.2-1 libxt6_1:1.1.5-0ubuntu1 linux-libc-dev_4.4.0-22.39 lockfile-progs_0.1.17 login_1:4.2-3.1ubuntu5 lsb-base_9.20160110 m4_1.4.17-5 make_4.1-9 man-db_2.7.5-1 mawk_1.3.3-17ubuntu2 mime-support_3.59ubuntu1 mount_2.27.1-6ubuntu3 multiarch-support_2.23-0ubuntu3 ncurses-base_6.0+20160213-1ubuntu1 ncurses-bin_6.0+20160213-1ubuntu1 netbase_5.3 openssl_1.0.2g-1ubuntu4 optipng_0.7.6-1build1 passwd_1:4.2-3.1ubuntu5 patch_2.7.5-1 perl_5.22.2-1 perl-base_5.22.2-1 perl-modules-5.22_5.22.2-1 pkg-create-dbgsym_0.72 pkgbinarymangler_129 po-debconf_1.0.19 policyrcd-script-zg2_0.1-3 procps_2:3.3.10-4ubuntu2 python_2.7.11-1 python-minimal_2.7.11-1 python-pkg-resources_20.10.1-1 python-scour_0.32-1 python-six_1.10.0-3 python2.7_2.7.11-8 python2.7-minimal_2.7.11-8 r-base-core_3.3.0-1 r-base-dev_3.3.0-1 r-bioc-biocgenerics_0.16.1-1 readline-common_6.3-8ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-biobase-dummy_0.invalid.0 sed_4.2.2-7.1 sensible-utils_0.0.9 systemd_229-5ubuntu1 systemd-sysv_229-5ubuntu1 sysv-rc_2.88dsf-59.3ubuntu5 sysvinit-utils_2.88dsf-59.3ubuntu5 tar_1.28-2.2 tzdata_2016d-2 ubuntu-keyring_2012.05.19 ucf_3.0036 unzip_6.0-20ubuntu1 util-linux_2.27.1-6ubuntu3 x11-common_1:7.7+13ubuntu3 xdg-utils_1.1.1-1ubuntu1 xz-utils_5.1.1alpha+20120614-2ubuntu2 zip_3.0-11 zlib1g_1:1.2.8.dfsg-2ubuntu5 zlib1g-dev_1:1.2.8.dfsg-2ubuntu5 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: Signature made Sun May 8 06:12:33 2016 UTC using RSA key ID D1C646D1 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./r-bioc-biobase_2.32.0-1.dsc dpkg-source: info: extracting r-bioc-biobase in r-bioc-biobase-2.32.0 dpkg-source: info: unpacking r-bioc-biobase_2.32.0.orig.tar.gz dpkg-source: info: unpacking r-bioc-biobase_2.32.0-1.debian.tar.xz dpkg-source: info: applying exclude_testing_golubEsets.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/«PKGBUILDDIR» SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/«PKGBUILDDIR»' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ───────────────── dpkg-buildpackage: source package r-bioc-biobase dpkg-buildpackage: source version 2.32.0-1 dpkg-buildpackage: source distribution unstable dpkg-source --before-build r-bioc-biobase-2.32.0 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean test -x debian/rules dh_clean if test -d src; then \ find src -regex ".*\.o" | \ xargs --no-run-if-empty -r rm; \ fi rm -f config.log config.status debian/rules build test -x debian/rules mkdir -p "." /usr/share/cdbs/1/rules/buildcore.mk:110: CDBS WARNING: DEB_DH_BUILDDEB_ARGS is deprecated since 0.4.85 fakeroot debian/rules binary test -x debian/rules dh_testroot dh_prep dh_installdirs -A mkdir -p "." /usr/share/cdbs/1/rules/buildcore.mk:110: CDBS WARNING: DEB_DH_BUILDDEB_ARGS is deprecated since 0.4.85 dh_installdirs usr/lib/R/site-library echo "R:Depends=r-base-core (>= 3.3.0-1), r-api-3" >> debian/r-bioc-biobase.substvars if test -f /usr/bin/xvfb-run; then \ xvfb-run -a \ R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-bioc-biobase/usr/lib/R/site-library --clean \ . \ "--built-timestamp=\"Sun, 08 May 2016 08:10:13 +0200\"" \ ; \ else \ R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-bioc-biobase/usr/lib/R/site-library \ --clean . \ "--built-timestamp=\"Sun, 08 May 2016 08:10:13 +0200\"" \ ; \ fi * installing *source* package ‘Biobase’ ... ** libs make[1]: Entering directory '/«PKGBUILDDIR»/src' gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rinit.c -o Rinit.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c anyMissing.c -o anyMissing.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c envir.c -o envir.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c matchpt.c -o matchpt.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rowMedians.c -o rowMedians.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sublist_extract.c -o sublist_extract.o gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/usr/lib/R/lib -lR make[1]: Leaving directory '/«PKGBUILDDIR»/src' make[1]: Entering directory '/«PKGBUILDDIR»/src' make[1]: Leaving directory '/«PKGBUILDDIR»/src' installing to /«PKGBUILDDIR»/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/libs ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (Biobase) rm -vf /«PKGBUILDDIR»/debian/r-bioc-biobase/usr/lib/R/site-library/R.css \ /«PKGBUILDDIR»/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/COPYING \ /«PKGBUILDDIR»/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE.txt \ /«PKGBUILDDIR»/debian/r-bioc-biobase/usr/lib/R/site-library/Biobase/LICENSE if test -f debian/overrides; then \ install -d /«PKGBUILDDIR»/debian/r-bioc-biobase/usr/share/lintian/overrides ; \ install -m 0644 debian/overrides \ /«PKGBUILDDIR»/debian/r-bioc-biobase/usr/share/lintian/overrides/r-bioc-biobase; \ fi Adding cdbs dependencies to debian/r-bioc-biobase.substvars dh_installdirs -pr-bioc-biobase echo "R:Depends=r-base-core (>= 3.3.0~)" >> debian/r-bioc-biobase.substvars dh_installdocs -pr-bioc-biobase ./NEWS dh_installexamples -pr-bioc-biobase dh_installman -pr-bioc-biobase dh_installinfo -pr-bioc-biobase dh_installmenu -pr-bioc-biobase dh_installcron -pr-bioc-biobase dh_installinit -pr-bioc-biobase dh_installdebconf -pr-bioc-biobase dh_installemacsen -pr-bioc-biobase dh_installcatalogs -pr-bioc-biobase dh_installpam -pr-bioc-biobase dh_installlogrotate -pr-bioc-biobase dh_installlogcheck -pr-bioc-biobase dh_installchangelogs -pr-bioc-biobase dh_installudev -pr-bioc-biobase dh_lintian -pr-bioc-biobase dh_bugfiles -pr-bioc-biobase dh_install -pr-bioc-biobase dh_link -pr-bioc-biobase dh_installmime -pr-bioc-biobase dh_installgsettings -pr-bioc-biobase dh_strip -pr-bioc-biobase dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform amd64: r-bioc-biobase dh_strip debug symbol extraction: packages to act on: r-bioc-biobase dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package r-bioc-biobase: unused substitution variable ${R:Depends} /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol dh_compress -pr-bioc-biobase dh_fixperms -pr-bioc-biobase dh_makeshlibs -pr-bioc-biobase dh_installdeb -pr-bioc-biobase dh_perl -pr-bioc-biobase dh_shlibdeps -pr-bioc-biobase dh_gencontrol -pr-bioc-biobase dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform amd64: r-bioc-biobase dh_gencontrol debug symbol wrapper: packages to act on: r-bioc-biobase dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: processing package r-bioc-biobase (pkgdir debian/r-bioc-biobase, ddeb package dir debian/r-bioc-biobase-dbgsym) dh_gencontrol debug symbol wrapper: building r-bioc-biobase-dbgsym_2.32.0-1_amd64.ddeb dpkg-deb: building package 'r-bioc-biobase-dbgsym' in '../r-bioc-biobase-dbgsym_2.32.0-1_amd64.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile r-bioc-biobase-dbgsym_2.32.0-1_amd64.ddeb gnu-r extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe # only call dh_scour for packages in main if grep -q '^Component:[[:space:]]*main' /CurrentlyBuilding 2>/dev/null; then dh_scour -pr-bioc-biobase ; fi dh_md5sums -pr-bioc-biobase dh_builddeb -pr-bioc-biobase -- -Z xz INFO: pkgstriptranslations version 129 pkgstriptranslations: processing r-bioc-biobase (in debian/r-bioc-biobase); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-bioc-biobase/DEBIAN/control, package r-bioc-biobase, directory debian/r-bioc-biobase pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-bioc-biobase ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-bioc-biobase' in '../r-bioc-biobase_2.32.0-1_amd64.deb'. dpkg-genchanges -b -mLaunchpad Build Daemon >../r-bioc-biobase_2.32.0-1_amd64.changes dpkg-genchanges: binary-only upload (no source code included) dpkg-source --after-build r-bioc-biobase-2.32.0 dpkg-buildpackage: binary-only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20160508-1115 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build Chroot │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ r-bioc-biobase_2.32.0-1_amd64.changes: ────────────────────────────────────── Format: 1.8 Date: Sun, 08 May 2016 08:10:13 +0200 Source: r-bioc-biobase Binary: r-bioc-biobase Architecture: amd64 Version: 2.32.0-1 Distribution: yakkety-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: r-bioc-biobase - base functions for Bioconductor Changes: r-bioc-biobase (2.32.0-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control Checksums-Sha1: 97deb2f1813c9ef2b9eb4646b6f7989df0f8de68 14168 r-bioc-biobase-dbgsym_2.32.0-1_amd64.ddeb 11b563fa6a4dbdb9a83a6ebd5d7281f314e4b63a 1998592 r-bioc-biobase_2.32.0-1_amd64.deb Checksums-Sha256: cb3e42edcd7934ab093ad3839cb18c4f636344175fca4509a519b181df05cdc8 14168 r-bioc-biobase-dbgsym_2.32.0-1_amd64.ddeb 6dd0ed0e57c3847a680ed5ccd1a8535d0e7f801150a92da4aae5333c0eb8601f 1998592 r-bioc-biobase_2.32.0-1_amd64.deb Files: 040b03b9ef9b4f7589f93811c34f8371 14168 gnu-r extra r-bioc-biobase-dbgsym_2.32.0-1_amd64.ddeb 75d4d85c813a5d59d5cb087497e8b67d 1998592 gnu-r optional r-bioc-biobase_2.32.0-1_amd64.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ r-bioc-biobase_2.32.0-1_amd64.deb ───────────────────────────────── new debian package, version 2.0. size 1998592 bytes: control archive=4543 bytes. 1050 bytes, 21 lines control 12326 bytes, 128 lines md5sums Package: r-bioc-biobase Version: 2.32.0-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 2686 Depends: libc6 (>= 2.3), r-base-core (>= 3.3.0~), r-bioc-biocgenerics (>= 0.3.2) Section: gnu-r Priority: optional Homepage: http://www.bioconductor.org/packages/release/bioc/html/Biobase.html Description: base functions for Bioconductor Biobase is part of the Bioconductor project, and is used by many other packages. Biobase contains standardized data structures to represent genomic data, and functions that are needed by many other packages or which replace R functions. . Bioconductor is a project to develop innovative software tools for use in computational biology. It is based on the R language. You should already be quite familiar with R before using Bioconductor. 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./usr/share/doc/r-bioc-biobase/NEWS.gz -rw-r--r-- root/root 604 2016-05-08 06:11 ./usr/share/doc/r-bioc-biobase/README.test -rw-r--r-- root/root 1021 2016-05-08 06:11 ./usr/share/doc/r-bioc-biobase/changelog.Debian.gz -rw-r--r-- root/root 10747 2016-05-08 06:11 ./usr/share/doc/r-bioc-biobase/copyright ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Not removing build depends: as requested Keeping session: ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: amd64 Build-Space: 8196 Build-Time: 11 Distribution: yakkety-proposed Host Architecture: amd64 Install-Time: 24 Job: r-bioc-biobase_2.32.0-1.dsc Machine Architecture: amd64 Package: r-bioc-biobase Package-Time: 36 Source-Version: 2.32.0-1 Space: 8196 Status: successful Version: 2.32.0-1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20160508-1115 Build needed 00:00:36, 8196k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-9708228'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-9708228/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-9708228'] Unmounting chroot for build PACKAGEBUILD-9708228... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-9708228'] Removing build PACKAGEBUILD-9708228