https://launchpad.net/ubuntu/+source/r-bioc-bitseq/1.32.0+dfsg-1build1/+build/19385913 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux riscv64-qemu-lcy01-016 5.4.0-21-generic #25-Ubuntu SMP Tue Mar 31 01:57:06 UTC 2020 riscv64 Buildd toolchain package versions: launchpad-buildd_188 python-lpbuildd_188 sbuild_0.79.0-1ubuntu1 git_1:2.25.1-1ubuntu1 dpkg-dev_1.19.7ubuntu2 python-debian_0.1.36build1. Syncing the system clock with the buildd NTP service... 31 May 07:38:33 ntpdate[188040]: adjust time server 10.211.37.1 offset -0.001006 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=groovy --arch=riscv64 PACKAGEBUILD-19385913 --image-type chroot /home/buildd/filecache-default/f3eb94e98b295919e6c8d0c40a2cb7b393a0119c Creating target for build PACKAGEBUILD-19385913 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=groovy --arch=riscv64 PACKAGEBUILD-19385913 Starting target for build PACKAGEBUILD-19385913 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=groovy --arch=riscv64 PACKAGEBUILD-19385913 'deb http://ftpmaster.internal/ubuntu groovy main universe' 'deb http://ftpmaster.internal/ubuntu groovy-security main universe' 'deb http://ftpmaster.internal/ubuntu groovy-updates main universe' 'deb http://ftpmaster.internal/ubuntu groovy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-19385913 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=groovy --arch=riscv64 PACKAGEBUILD-19385913 Updating target for build PACKAGEBUILD-19385913 Get:1 http://ftpmaster.internal/ubuntu groovy InRelease [268 kB] Get:2 http://ftpmaster.internal/ubuntu groovy-security InRelease [89.1 kB] Get:3 http://ftpmaster.internal/ubuntu groovy-updates InRelease [89.1 kB] Get:4 http://ftpmaster.internal/ubuntu groovy-proposed InRelease [119 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main riscv64 Packages [881 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main Translation-en [507 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/universe riscv64 Packages [8080 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/universe Translation-en [5179 kB] Get:9 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 Packages [31.5 kB] Get:10 http://ftpmaster.internal/ubuntu groovy-proposed/main Translation-en [24.8 kB] Get:11 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 Packages [354 kB] Get:12 http://ftpmaster.internal/ubuntu groovy-proposed/universe Translation-en [256 kB] Fetched 15.9 MB in 28s (568 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be REMOVED: libgcc1* The following packages will be upgraded: apt base-files binutils binutils-common binutils-riscv64-linux-gnu bzip2 cpp-9 dash debconf debianutils e2fsprogs g++-9 gcc-10-base gcc-8-base gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv gzip libacl1 libapt-pkg6.0 libatomic1 libbinutils libbz2-1.0 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libext2fs2 libgcc-9-dev libgcc-s1 libgomp1 libgpm2 libidn2-0 libncursesw6 libperl5.30 libsqlite3-0 libss2 libssl1.1 libstdc++-9-dev libstdc++6 libsystemd0 libtinfo6 libudev1 logsave make ncurses-base ncurses-bin openssl perl perl-base perl-modules-5.30 sysvinit-utils 57 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. Need to get 41.1 MB of archives. After this operation, 138 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu groovy/main riscv64 libcrypt-dev riscv64 1:4.4.15-1ubuntu1 [205 kB] Get:2 http://ftpmaster.internal/ubuntu groovy/main riscv64 libcrypt1 riscv64 1:4.4.15-1ubuntu1 [94.1 kB] Get:3 http://ftpmaster.internal/ubuntu groovy/main riscv64 base-files riscv64 11ubuntu7 [59.7 kB] Get:4 http://ftpmaster.internal/ubuntu groovy/main riscv64 debianutils riscv64 4.11 [84.5 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main riscv64 perl-modules-5.30 all 5.30.2-1 [2740 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main riscv64 libperl5.30 riscv64 5.30.2-1 [3437 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/main riscv64 perl riscv64 5.30.2-1 [224 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/main riscv64 perl-base riscv64 5.30.2-1 [1420 kB] Get:9 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 bzip2 riscv64 1.0.8-3 [32.6 kB] Get:10 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 libbz2-1.0 riscv64 1.0.8-3 [34.5 kB] Get:11 http://ftpmaster.internal/ubuntu groovy/main riscv64 debconf all 1.5.74 [121 kB] Get:12 http://ftpmaster.internal/ubuntu groovy/main riscv64 dash riscv64 0.5.10.2-7 [82.0 kB] Get:13 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 gzip riscv64 1.10-2ubuntu1 [91.7 kB] Get:14 http://ftpmaster.internal/ubuntu groovy/main riscv64 ncurses-bin riscv64 6.2-1 [166 kB] Get:15 http://ftpmaster.internal/ubuntu groovy/main riscv64 ncurses-base all 6.2-1 [18.7 kB] Get:16 http://ftpmaster.internal/ubuntu groovy/main riscv64 sysvinit-utils riscv64 2.96-3ubuntu1 [19.6 kB] Get:17 http://ftpmaster.internal/ubuntu groovy/main riscv64 libatomic1 riscv64 10.1.0-3ubuntu1 [7480 B] Get:18 http://ftpmaster.internal/ubuntu groovy/main riscv64 libgomp1 riscv64 10.1.0-3ubuntu1 [83.5 kB] Get:19 http://ftpmaster.internal/ubuntu groovy/main riscv64 gcc-10-base riscv64 10.1.0-3ubuntu1 [20.1 kB] Get:20 http://ftpmaster.internal/ubuntu groovy/main riscv64 libgcc-s1 riscv64 10.1.0-3ubuntu1 [40.4 kB] Get:21 http://ftpmaster.internal/ubuntu groovy/main riscv64 libcc1-0 riscv64 10.1.0-3ubuntu1 [38.1 kB] Get:22 http://ftpmaster.internal/ubuntu groovy/main riscv64 libstdc++6 riscv64 10.1.0-3ubuntu1 [507 kB] Get:23 http://ftpmaster.internal/ubuntu groovy/main riscv64 libsystemd0 riscv64 245.5-3ubuntu1 [239 kB] Get:24 http://ftpmaster.internal/ubuntu groovy/main riscv64 libudev1 riscv64 245.5-3ubuntu1 [66.5 kB] Get:25 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 libapt-pkg6.0 riscv64 2.1.5 [803 kB] Get:26 http://ftpmaster.internal/ubuntu groovy/main riscv64 gpgv riscv64 2.2.20-1ubuntu1 [181 kB] Get:27 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 apt riscv64 2.1.5 [1235 kB] Get:28 http://ftpmaster.internal/ubuntu groovy/main riscv64 logsave riscv64 1.45.6-1ubuntu1 [9708 B] Get:29 http://ftpmaster.internal/ubuntu groovy/main riscv64 libext2fs2 riscv64 1.45.6-1ubuntu1 [175 kB] Get:30 http://ftpmaster.internal/ubuntu groovy/main riscv64 e2fsprogs riscv64 1.45.6-1ubuntu1 [496 kB] Get:31 http://ftpmaster.internal/ubuntu groovy/main riscv64 libacl1 riscv64 2.2.53-8 [16.4 kB] Get:32 http://ftpmaster.internal/ubuntu groovy/main riscv64 libncursesw6 riscv64 6.2-1 [116 kB] Get:33 http://ftpmaster.internal/ubuntu groovy/main riscv64 libtinfo6 riscv64 6.2-1 [78.7 kB] Get:34 http://ftpmaster.internal/ubuntu groovy/main riscv64 libidn2-0 riscv64 2.3.0-1 [50.5 kB] Get:35 http://ftpmaster.internal/ubuntu groovy/main riscv64 libcom-err2 riscv64 1.45.6-1ubuntu1 [8564 B] Get:36 http://ftpmaster.internal/ubuntu groovy/main riscv64 libss2 riscv64 1.45.6-1ubuntu1 [9820 B] Get:37 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 libsqlite3-0 riscv64 3.32.1-1 [488 kB] Get:38 http://ftpmaster.internal/ubuntu groovy/main riscv64 libssl1.1 riscv64 1.1.1f-1ubuntu2 [967 kB] Get:39 http://ftpmaster.internal/ubuntu groovy/main riscv64 openssl riscv64 1.1.1f-1ubuntu2 [595 kB] Get:40 http://ftpmaster.internal/ubuntu groovy/main riscv64 libctf0 riscv64 2.34-7ubuntu1 [39.9 kB] Get:41 http://ftpmaster.internal/ubuntu groovy/main riscv64 binutils-riscv64-linux-gnu riscv64 2.34-7ubuntu1 [646 kB] Get:42 http://ftpmaster.internal/ubuntu groovy/main riscv64 libbinutils riscv64 2.34-7ubuntu1 [279 kB] Get:43 http://ftpmaster.internal/ubuntu groovy/main riscv64 binutils riscv64 2.34-7ubuntu1 [3288 B] Get:44 http://ftpmaster.internal/ubuntu groovy/main riscv64 binutils-common riscv64 2.34-7ubuntu1 [199 kB] Get:45 http://ftpmaster.internal/ubuntu groovy/main riscv64 libctf-nobfd0 riscv64 2.34-7ubuntu1 [40.7 kB] Get:46 http://ftpmaster.internal/ubuntu groovy/main riscv64 g++-9 riscv64 9.3.0-13ubuntu1 [6931 kB] Get:47 http://ftpmaster.internal/ubuntu groovy/main riscv64 gcc-9 riscv64 9.3.0-13ubuntu1 [6789 kB] Get:48 http://ftpmaster.internal/ubuntu groovy/main riscv64 libstdc++-9-dev riscv64 9.3.0-13ubuntu1 [3670 kB] Get:49 http://ftpmaster.internal/ubuntu groovy/main riscv64 libgcc-9-dev riscv64 9.3.0-13ubuntu1 [405 kB] Get:50 http://ftpmaster.internal/ubuntu groovy/main riscv64 cpp-9 riscv64 9.3.0-13ubuntu1 [6047 kB] Get:51 http://ftpmaster.internal/ubuntu groovy/main riscv64 gcc-9-base riscv64 9.3.0-13ubuntu1 [19.6 kB] Get:52 http://ftpmaster.internal/ubuntu groovy/universe riscv64 gcc-8-base riscv64 8.4.0-4ubuntu1 [18.4 kB] Get:53 http://ftpmaster.internal/ubuntu groovy/main riscv64 gpg riscv64 2.2.20-1ubuntu1 [439 kB] Get:54 http://ftpmaster.internal/ubuntu groovy/main riscv64 gpgconf riscv64 2.2.20-1ubuntu1 [110 kB] Get:55 http://ftpmaster.internal/ubuntu groovy/main riscv64 gpg-agent riscv64 2.2.20-1ubuntu1 [202 kB] Get:56 http://ftpmaster.internal/ubuntu groovy/main riscv64 libgpm2 riscv64 1.20.7-6 [14.2 kB] Get:57 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 make riscv64 4.3-1 [157 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 41.1 MB in 7s (5655 kB/s) (Reading database ... 9817 files and directories currently installed.) Preparing to unpack .../libcrypt-dev_1%3a4.4.15-1ubuntu1_riscv64.deb ... Unpacking libcrypt-dev:riscv64 (1:4.4.15-1ubuntu1) over (1:4.4.10-10ubuntu4) ... Preparing to unpack .../libcrypt1_1%3a4.4.15-1ubuntu1_riscv64.deb ... Unpacking libcrypt1:riscv64 (1:4.4.15-1ubuntu1) over (1:4.4.10-10ubuntu4) ... Setting up libcrypt1:riscv64 (1:4.4.15-1ubuntu1) ... (Reading database ... 9817 files and directories currently installed.) Preparing to unpack .../base-files_11ubuntu7_riscv64.deb ... Unpacking base-files (11ubuntu7) over (11ubuntu5) ... Setting up base-files (11ubuntu7) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Installing new version of config file /etc/update-motd.d/50-motd-news ... (Reading database ... 9817 files and directories currently installed.) Preparing to unpack .../debianutils_4.11_riscv64.deb ... Unpacking debianutils (4.11) over (4.9.1) ... 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Installing new version of config file /etc/mke2fs.conf ... Setting up binutils (2.34-7ubuntu1) ... Setting up libgcc-9-dev:riscv64 (9.3.0-13ubuntu1) ... Setting up perl (5.30.2-1) ... Setting up cpp-9 (9.3.0-13ubuntu1) ... Setting up gcc-9 (9.3.0-13ubuntu1) ... Setting up libstdc++-9-dev:riscv64 (9.3.0-13ubuntu1) ... Setting up g++-9 (9.3.0-13ubuntu1) ... Processing triggers for libc-bin (2.31-0ubuntu9) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-19385913 riscv64 groovy-proposed -c chroot:build-PACKAGEBUILD-19385913 --arch=riscv64 --dist=groovy-proposed --nolog r-bioc-bitseq_1.32.0+dfsg-1build1.dsc Initiating build PACKAGEBUILD-19385913 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 5.4.0-21-generic #25-Ubuntu SMP Tue Mar 31 01:57:06 UTC 2020 riscv64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on riscv64-qemu-lcy01-016.buildd +==============================================================================+ | r-bioc-bitseq 1.32.0+dfsg-1build1 (riscv64) Sun, 31 May 2020 07:43:10 +0000 | +==============================================================================+ Package: r-bioc-bitseq Version: 1.32.0+dfsg-1build1 Source Version: 1.32.0+dfsg-1build1 Distribution: groovy-proposed Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-19385913/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-bitseq-rIslcH/resolver-dLTodU' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-bioc-bitseq_1.32.0+dfsg-1build1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/r-bioc-bitseq-rIslcH/r-bioc-bitseq-1.32.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-bitseq-rIslcH' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), dh-r, r-base-dev, r-bioc-rsamtools (>= 1.99.3), r-bioc-s4vectors, r-bioc-iranges, r-bioc-rhtslib, libboost-dev, libcurl4-openssl-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 12), dh-r, r-base-dev, r-bioc-rsamtools (>= 1.99.3), r-bioc-s4vectors, r-bioc-iranges, r-bioc-rhtslib, libboost-dev, libcurl4-openssl-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [437 B] Get:5 copy:/<>/apt_archive ./ Packages [519 B] Fetched 1913 B in 1s (3189 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libgpm2 Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-9 groff-base icu-devtools intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libboost-dev libboost1.71-dev libbrotli1 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libcurl4-openssl-dev libdatrie1 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-9-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu-dev libicu66 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libncurses-dev libncurses5-dev libncurses6 libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db pkg-config po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicranges r-bioc-iranges r-bioc-rhtslib r-bioc-rsamtools r-bioc-s4vectors r-bioc-xvector r-bioc-zlibbioc r-cran-bh r-cran-bitops r-cran-crayon r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-lambda.r r-cran-rcurl r-cran-snow tzdata ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc gfortran-9-doc libcoarrays-dev groff liblapack-doc libboost-doc libboost1.71-doc libboost-atomic1.71-dev libboost-chrono1.71-dev libboost-container1.71-dev libboost-context1.71-dev libboost-contract1.71-dev libboost-coroutine1.71-dev libboost-date-time1.71-dev libboost-exception1.71-dev libboost-fiber1.71-dev libboost-filesystem1.71-dev libboost-graph1.71-dev libboost-graph-parallel1.71-dev libboost-iostreams1.71-dev libboost-locale1.71-dev libboost-log1.71-dev libboost-math1.71-dev libboost-mpi1.71-dev libboost-mpi-python1.71-dev libboost-numpy1.71-dev libboost-program-options1.71-dev libboost-python1.71-dev libboost-random1.71-dev libboost-regex1.71-dev libboost-serialization1.71-dev libboost-stacktrace1.71-dev libboost-system1.71-dev libboost-test1.71-dev libboost-thread1.71-dev libboost-timer1.71-dev libboost-type-erasure1.71-dev libboost-wave1.71-dev libboost1.71-tools-dev libmpfrc++-dev libntl-dev libcurl4-doc libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev libssl-dev krb5-doc krb5-user icu-doc liblzma-doc ncurses-doc readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk m4-doc apparmor less www-browser libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo r-bioc-biobase r-bioc-delayedarray r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc r-bioc-variantannotation r-bioc-genomicalignments r-bioc-shortread r-cran-codetools r-cran-knitr r-cran-data.table r-bioc-bsgenome r-bioc-genomicfeatures r-cran-matrix r-bioc-rtracklayer r-bioc-gviz r-bioc-annotationhub r-bioc-edger r-bioc-summarizedexperiment r-bioc-graph r-cran-rstudioapi r-cran-shiny r-cran-rmarkdown r-cran-jsonlite r-cran-xml r-cran-rmpi r-cran-rsprng r-cran-rlecuyer Recommended packages: devscripts curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libpng-tools publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl r-recommended r-doc-html r-cran-runit r-cran-batchjobs r-cran-doparallel r-cran-batchtools r-cran-rmpi r-cran-digest r-bioc-annotate r-bioc-summarizedexperiment r-bioc-shortread r-cran-testthat r-cran-withr r-cran-mockery r-cran-testit r-cran-codetools r-cran-survival libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-9 groff-base icu-devtools intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libboost-dev libboost1.71-dev libbrotli1 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libcurl4-openssl-dev libdatrie1 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-9-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu-dev libicu66 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libncurses-dev libncurses5-dev libncurses6 libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db pkg-config po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicranges r-bioc-iranges r-bioc-rhtslib r-bioc-rsamtools r-bioc-s4vectors r-bioc-xvector r-bioc-zlibbioc r-cran-bh r-cran-bitops r-cran-crayon r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-lambda.r r-cran-rcurl r-cran-snow sbuild-build-depends-main-dummy tzdata ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 166 newly installed, 0 to remove and 0 not upgraded. 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riscv64 0.6.13-1 [71.1 kB] Get:51 http://ftpmaster.internal/ubuntu groovy/main riscv64 gettext riscv64 0.19.8.1-10build1 [844 kB] Get:52 http://ftpmaster.internal/ubuntu groovy/main riscv64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:53 http://ftpmaster.internal/ubuntu groovy/main riscv64 po-debconf all 1.0.21 [233 kB] Get:54 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 debhelper all 13.1ubuntu1 [885 kB] Get:55 http://ftpmaster.internal/ubuntu groovy/main riscv64 zip riscv64 3.0-11build1 [156 kB] Get:56 http://ftpmaster.internal/ubuntu groovy/main riscv64 unzip riscv64 6.0-25ubuntu1 [157 kB] Get:57 http://ftpmaster.internal/ubuntu groovy/main riscv64 libpaper1 riscv64 1.1.28 [12.2 kB] Get:58 http://ftpmaster.internal/ubuntu groovy/main riscv64 libpaper-utils riscv64 1.1.28 [8044 B] Get:59 http://ftpmaster.internal/ubuntu groovy/main riscv64 xdg-utils all 1.1.3-2ubuntu1 [61.6 kB] Get:60 http://ftpmaster.internal/ubuntu groovy/main riscv64 libblas3 riscv64 3.9.0-2 [106 kB] Get:61 http://ftpmaster.internal/ubuntu groovy/main riscv64 libfreetype6 riscv64 2.10.1-2 [313 kB] Get:62 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 fonts-dejavu-core all 2.37-2 [1041 kB] Get:63 http://ftpmaster.internal/ubuntu groovy/main riscv64 fontconfig-config all 2.13.1-2ubuntu3 [28.8 kB] Get:64 http://ftpmaster.internal/ubuntu groovy/main riscv64 libfontconfig1 riscv64 2.13.1-2ubuntu3 [104 kB] Get:65 http://ftpmaster.internal/ubuntu groovy/main riscv64 libpixman-1-0 riscv64 0.38.4-0ubuntu1 [146 kB] Get:66 http://ftpmaster.internal/ubuntu groovy/main riscv64 libxcb-render0 riscv64 1.14-2 [12.8 kB] Get:67 http://ftpmaster.internal/ubuntu groovy/main riscv64 libxcb-shm0 riscv64 1.14-2 [5032 B] Get:68 http://ftpmaster.internal/ubuntu groovy/main riscv64 libxrender1 riscv64 1:0.9.10-1 [16.8 kB] Get:69 http://ftpmaster.internal/ubuntu groovy/main riscv64 libcairo2 riscv64 1.16.0-4ubuntu1 [531 kB] Get:70 http://ftpmaster.internal/ubuntu groovy/main riscv64 libbrotli1 riscv64 1.0.7-6.1 [279 kB] Get:71 http://ftpmaster.internal/ubuntu groovy/main riscv64 libroken18-heimdal riscv64 7.7.0+dfsg-2 [36.5 kB] Get:72 http://ftpmaster.internal/ubuntu groovy/main riscv64 libasn1-8-heimdal riscv64 7.7.0+dfsg-2 [145 kB] Get:73 http://ftpmaster.internal/ubuntu groovy/main riscv64 libheimbase1-heimdal riscv64 7.7.0+dfsg-2 [24.6 kB] Get:74 http://ftpmaster.internal/ubuntu groovy/main riscv64 libhcrypto4-heimdal riscv64 7.7.0+dfsg-2 [86.8 kB] Get:75 http://ftpmaster.internal/ubuntu groovy/main riscv64 libwind0-heimdal riscv64 7.7.0+dfsg-2 [47.0 kB] Get:76 http://ftpmaster.internal/ubuntu groovy/main riscv64 libhx509-5-heimdal riscv64 7.7.0+dfsg-2 [89.8 kB] Get:77 http://ftpmaster.internal/ubuntu groovy/main riscv64 libkrb5-26-heimdal riscv64 7.7.0+dfsg-2 [175 kB] Get:78 http://ftpmaster.internal/ubuntu groovy/main riscv64 libheimntlm0-heimdal riscv64 7.7.0+dfsg-2 [13.4 kB] Get:79 http://ftpmaster.internal/ubuntu groovy/main riscv64 libgssapi3-heimdal riscv64 7.7.0+dfsg-2 [83.4 kB] Get:80 http://ftpmaster.internal/ubuntu groovy/main riscv64 libsasl2-modules-db riscv64 2.1.27+dfsg-2 [13.7 kB] Get:81 http://ftpmaster.internal/ubuntu groovy/main riscv64 libsasl2-2 riscv64 2.1.27+dfsg-2 [45.2 kB] Get:82 http://ftpmaster.internal/ubuntu groovy/main riscv64 libldap-common all 2.4.49+dfsg-2ubuntu2 [17.4 kB] Get:83 http://ftpmaster.internal/ubuntu groovy/main riscv64 libldap-2.4-2 riscv64 2.4.49+dfsg-2ubuntu2 [137 kB] Get:84 http://ftpmaster.internal/ubuntu groovy/main riscv64 libnghttp2-14 riscv64 1.40.0-1build1 [70.9 kB] Get:85 http://ftpmaster.internal/ubuntu groovy/main riscv64 librtmp1 riscv64 2.4+20151223.gitfa8646d.1-2build1 [50.8 kB] Get:86 http://ftpmaster.internal/ubuntu groovy/main riscv64 libssh-4 riscv64 0.9.4-1ubuntu1 [148 kB] Get:87 http://ftpmaster.internal/ubuntu groovy/main riscv64 libcurl4 riscv64 7.68.0-1ubuntu2 [208 kB] Get:88 http://ftpmaster.internal/ubuntu groovy/main riscv64 libjpeg-turbo8 riscv64 2.0.3-0ubuntu1 [101 kB] Get:89 http://ftpmaster.internal/ubuntu groovy/main riscv64 libjpeg8 riscv64 8c-2ubuntu8 [2224 B] Get:90 http://ftpmaster.internal/ubuntu groovy/main riscv64 libgfortran5 riscv64 10.1.0-3ubuntu1 [332 kB] Get:91 http://ftpmaster.internal/ubuntu groovy/main riscv64 liblapack3 riscv64 3.9.0-2 [1669 kB] Get:92 http://ftpmaster.internal/ubuntu groovy/main riscv64 fontconfig riscv64 2.13.1-2ubuntu3 [169 kB] Get:93 http://ftpmaster.internal/ubuntu groovy/main riscv64 libgraphite2-3 riscv64 1.3.14-1 [70.5 kB] Get:94 http://ftpmaster.internal/ubuntu groovy/main riscv64 libharfbuzz0b riscv64 2.6.4-1ubuntu4 [397 kB] Get:95 http://ftpmaster.internal/ubuntu groovy/main riscv64 libthai-data all 0.1.28-3 [134 kB] Get:96 http://ftpmaster.internal/ubuntu groovy/main riscv64 libdatrie1 riscv64 0.2.12-3 [16.3 kB] Get:97 http://ftpmaster.internal/ubuntu groovy/main riscv64 libthai0 riscv64 0.1.28-3 [15.8 kB] Get:98 http://ftpmaster.internal/ubuntu groovy/main riscv64 libpango-1.0-0 riscv64 1.44.7-2ubuntu4 [148 kB] Get:99 http://ftpmaster.internal/ubuntu groovy/main riscv64 libpangoft2-1.0-0 riscv64 1.44.7-2ubuntu4 [29.3 kB] Get:100 http://ftpmaster.internal/ubuntu groovy/main riscv64 libpangocairo-1.0-0 riscv64 1.44.7-2ubuntu4 [21.0 kB] Get:101 http://ftpmaster.internal/ubuntu groovy/main riscv64 libtcl8.6 riscv64 8.6.10+dfsg-1 [830 kB] Get:102 http://ftpmaster.internal/ubuntu groovy/main riscv64 libjbig0 riscv64 2.1-3.1build1 [25.7 kB] Get:103 http://ftpmaster.internal/ubuntu groovy/main riscv64 libwebp6 riscv64 0.6.1-2 [150 kB] Get:104 http://ftpmaster.internal/ubuntu groovy/main riscv64 libtiff5 riscv64 4.1.0+git191117-2build1 [147 kB] Get:105 http://ftpmaster.internal/ubuntu groovy/main riscv64 libxft2 riscv64 2.3.3-0ubuntu1 [34.4 kB] Get:106 http://ftpmaster.internal/ubuntu groovy/main riscv64 x11-common all 1:7.7+19ubuntu14 [22.3 kB] Get:107 http://ftpmaster.internal/ubuntu groovy/main riscv64 libxss1 riscv64 1:1.2.3-1 [7496 B] Get:108 http://ftpmaster.internal/ubuntu groovy/main riscv64 libtk8.6 riscv64 8.6.10-1 [646 kB] Get:109 http://ftpmaster.internal/ubuntu groovy/main riscv64 libice6 riscv64 2:1.0.10-0ubuntu1 [34.7 kB] Get:110 http://ftpmaster.internal/ubuntu groovy/main riscv64 libsm6 riscv64 2:1.2.3-1 [14.6 kB] Get:111 http://ftpmaster.internal/ubuntu groovy/main riscv64 libxt6 riscv64 1:1.1.5-1 [136 kB] Get:112 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-base-core riscv64 4.0.0.20200528-1 [24.8 MB] Get:113 http://ftpmaster.internal/ubuntu groovy/main riscv64 libgfortran-9-dev riscv64 9.3.0-13ubuntu1 [887 kB] Get:114 http://ftpmaster.internal/ubuntu groovy/main riscv64 gfortran-9 riscv64 9.3.0-13ubuntu1 [6472 kB] Get:115 http://ftpmaster.internal/ubuntu groovy/main riscv64 gfortran riscv64 4:9.3.0-1ubuntu2 [1368 B] Get:116 http://ftpmaster.internal/ubuntu groovy/main riscv64 libblas-dev riscv64 3.9.0-2 [226 kB] Get:117 http://ftpmaster.internal/ubuntu groovy/main riscv64 liblapack-dev riscv64 3.9.0-2 [8476 kB] Get:118 http://ftpmaster.internal/ubuntu groovy/main riscv64 libncurses-dev riscv64 6.2-1 [691 kB] Get:119 http://ftpmaster.internal/ubuntu groovy/main riscv64 libncurses5-dev riscv64 6.2-1 [976 B] Get:120 http://ftpmaster.internal/ubuntu groovy/main riscv64 libreadline-dev riscv64 8.0-4 [262 kB] Get:121 http://ftpmaster.internal/ubuntu groovy/main riscv64 libjpeg-turbo8-dev riscv64 2.0.3-0ubuntu1 [358 kB] Get:122 http://ftpmaster.internal/ubuntu groovy/main riscv64 libjpeg8-dev riscv64 8c-2ubuntu8 [1692 B] Get:123 http://ftpmaster.internal/ubuntu groovy/main riscv64 libjpeg-dev riscv64 8c-2ubuntu8 [1688 B] Get:124 http://ftpmaster.internal/ubuntu groovy/main riscv64 libpcre2-16-0 riscv64 10.34-7 [107 kB] Get:125 http://ftpmaster.internal/ubuntu groovy/main riscv64 libpcre2-32-0 riscv64 10.34-7 [99.3 kB] Get:126 http://ftpmaster.internal/ubuntu groovy/main riscv64 libpcre2-posix2 riscv64 10.34-7 [5308 B] Get:127 http://ftpmaster.internal/ubuntu groovy/main riscv64 libpcre2-dev riscv64 10.34-7 [905 kB] Get:128 http://ftpmaster.internal/ubuntu groovy/main riscv64 libpcre16-3 riscv64 2:8.39-12build1 [81.1 kB] Get:129 http://ftpmaster.internal/ubuntu groovy/main riscv64 libpcre32-3 riscv64 2:8.39-12build1 [74.6 kB] Get:130 http://ftpmaster.internal/ubuntu groovy/main riscv64 libpcrecpp0v5 riscv64 2:8.39-12build1 [14.7 kB] Get:131 http://ftpmaster.internal/ubuntu groovy/main riscv64 libpcre3-dev riscv64 2:8.39-12build1 [710 kB] Get:132 http://ftpmaster.internal/ubuntu groovy/main riscv64 zlib1g-dev riscv64 1:1.2.11.dfsg-2ubuntu1 [207 kB] Get:133 http://ftpmaster.internal/ubuntu groovy/main riscv64 libpng-dev riscv64 1.6.37-2 [287 kB] Get:134 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 libbz2-dev riscv64 1.0.8-3 [66.7 kB] Get:135 http://ftpmaster.internal/ubuntu groovy/main riscv64 liblzma-dev riscv64 5.2.4-1 [226 kB] Get:136 http://ftpmaster.internal/ubuntu groovy/main riscv64 icu-devtools riscv64 66.1-2ubuntu2 [177 kB] Get:137 http://ftpmaster.internal/ubuntu groovy/main riscv64 libicu-dev riscv64 66.1-2ubuntu2 [12.5 MB] Get:138 http://ftpmaster.internal/ubuntu groovy/main riscv64 pkg-config riscv64 0.29.2-1ubuntu1 [43.7 kB] Get:139 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-base-dev all 4.0.0.20200528-1 [4524 B] Get:140 http://ftpmaster.internal/ubuntu groovy/main riscv64 libfile-which-perl all 1.23-1 [13.8 kB] Get:141 http://ftpmaster.internal/ubuntu groovy/universe riscv64 libswitch-perl all 2.17-2 [18.8 kB] Get:142 http://ftpmaster.internal/ubuntu groovy/universe riscv64 dh-r all 20200314 [35.5 kB] Get:143 http://ftpmaster.internal/ubuntu groovy/main riscv64 libboost1.71-dev riscv64 1.71.0-6ubuntu8 [9070 kB] Get:144 http://ftpmaster.internal/ubuntu groovy/main riscv64 libboost-dev riscv64 1.71.0.0ubuntu4 [3504 B] Get:145 http://ftpmaster.internal/ubuntu groovy/main riscv64 libcurl4-openssl-dev riscv64 7.68.0-1ubuntu2 [613 kB] Get:146 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-bioc-biocgenerics all 0.34.0-1build1 [639 kB] Get:147 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-formatr all 1.7-2build1 [147 kB] Get:148 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] Get:149 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] Get:150 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] Get:151 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-snow all 1:0.4.3-2 [109 kB] Get:152 http://ftpmaster.internal/ubuntu groovy/universe riscv64 r-cran-bh all 1.66.0-1 [5116 B] Get:153 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-bioc-biocparallel riscv64 1.22.0-1build1 [1140 kB] Get:154 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-bioc-s4vectors riscv64 0.26.1-1build1 [1999 kB] Get:155 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-bioc-iranges riscv64 2.22.2-1build1 [2268 kB] Get:156 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-bioc-zlibbioc all 1.34.0+dfsg-1build1 [8960 B] Get:157 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-bioc-xvector riscv64 0.28.0-1 [617 kB] Get:158 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-crayon all 1.3.4-4ubuntu2 [498 kB] Get:159 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-bioc-biostrings riscv64 2.56.0-1 [14.2 MB] Get:160 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-bitops riscv64 1.0-6-4build1 [22.4 kB] Get:161 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-rcurl riscv64 1.98-1.2-1build1 [786 kB] Get:162 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-bioc-genomeinfodbdata all 1.2.3-1build1 [10.4 MB] Get:163 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-bioc-genomeinfodb all 1.24.0-1build1 [3902 kB] Get:164 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-bioc-genomicranges riscv64 1.40.0+dfsg-1build1 [1873 kB] Get:165 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-bioc-rhtslib riscv64 1.20.0+dfsg-1build1 [1586 kB] Get:166 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-bioc-rsamtools riscv64 2.4.0-1build1 [3756 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 140 MB in 25s (5537 kB/s) Selecting previously unselected package libbsd0:riscv64. (Reading database ... 9816 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.10.0-1_riscv64.deb ... Unpacking libbsd0:riscv64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2ubuntu3_riscv64.deb ... Unpacking bsdmainutils (11.1.2ubuntu3) ... Selecting previously unselected package libuchardet0:riscv64. Preparing to unpack .../002-libuchardet0_0.0.6-3build1_riscv64.deb ... Unpacking libuchardet0:riscv64 (0.0.6-3build1) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-5_riscv64.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:riscv64. Preparing to unpack .../004-libpipeline1_1.5.2-2build1_riscv64.deb ... Unpacking libpipeline1:riscv64 (1.5.2-2build1) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.9.1-1_riscv64.deb ... Unpacking man-db (2.9.1-1) ... Selecting previously unselected package libncurses6:riscv64. Preparing to unpack .../006-libncurses6_6.2-1_riscv64.deb ... Unpacking libncurses6:riscv64 (6.2-1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../007-libmagic-mgc_1%3a5.38-5_riscv64.deb ... Unpacking libmagic-mgc (1:5.38-5) ... Selecting previously unselected package libmagic1:riscv64. Preparing to unpack .../008-libmagic1_1%3a5.38-5_riscv64.deb ... Unpacking libmagic1:riscv64 (1:5.38-5) ... Selecting previously unselected package file. Preparing to unpack .../009-file_1%3a5.38-5_riscv64.deb ... Unpacking file (1:5.38-5) ... Selecting previously unselected package libelf1:riscv64. Preparing to unpack .../010-libelf1_0.176-1.1build1_riscv64.deb ... Unpacking libelf1:riscv64 (0.176-1.1build1) ... Selecting previously unselected package libexpat1:riscv64. Preparing to unpack .../011-libexpat1_2.2.9-1build1_riscv64.deb ... Unpacking libexpat1:riscv64 (2.2.9-1build1) ... Selecting previously unselected package libfribidi0:riscv64. Preparing to unpack .../012-libfribidi0_1.0.8-2_riscv64.deb ... Unpacking libfribidi0:riscv64 (1.0.8-2) ... Selecting previously unselected package libglib2.0-0:riscv64. Preparing to unpack .../013-libglib2.0-0_2.64.3-1_riscv64.deb ... Unpacking libglib2.0-0:riscv64 (2.64.3-1) ... Selecting previously unselected package tzdata. Preparing to unpack .../014-tzdata_2020a-0ubuntu1_all.deb ... Unpacking tzdata (2020a-0ubuntu1) ... Selecting previously unselected package libicu66:riscv64. Preparing to unpack .../015-libicu66_66.1-2ubuntu2_riscv64.deb ... Unpacking libicu66:riscv64 (66.1-2ubuntu2) ... Selecting previously unselected package libxml2:riscv64. Preparing to unpack .../016-libxml2_2.9.10+dfsg-5_riscv64.deb ... Unpacking libxml2:riscv64 (2.9.10+dfsg-5) ... Selecting previously unselected package ucf. Preparing to unpack .../017-ucf_3.0042_all.deb ... Moving old data out of the way Unpacking ucf (3.0042) ... Selecting previously unselected package gettext-base. Preparing to unpack .../018-gettext-base_0.19.8.1-10build1_riscv64.deb ... Unpacking gettext-base (0.19.8.1-10build1) ... Selecting previously unselected package libkrb5support0:riscv64. Preparing to unpack .../019-libkrb5support0_1.17-6ubuntu4_riscv64.deb ... Unpacking libkrb5support0:riscv64 (1.17-6ubuntu4) ... Selecting previously unselected package libk5crypto3:riscv64. Preparing to unpack .../020-libk5crypto3_1.17-6ubuntu4_riscv64.deb ... Unpacking libk5crypto3:riscv64 (1.17-6ubuntu4) ... Selecting previously unselected package libkeyutils1:riscv64. Preparing to unpack .../021-libkeyutils1_1.6.1-2ubuntu1_riscv64.deb ... Unpacking libkeyutils1:riscv64 (1.6.1-2ubuntu1) ... Selecting previously unselected package libkrb5-3:riscv64. Preparing to unpack .../022-libkrb5-3_1.17-6ubuntu4_riscv64.deb ... Unpacking libkrb5-3:riscv64 (1.17-6ubuntu4) ... Selecting previously unselected package libgssapi-krb5-2:riscv64. Preparing to unpack .../023-libgssapi-krb5-2_1.17-6ubuntu4_riscv64.deb ... Unpacking libgssapi-krb5-2:riscv64 (1.17-6ubuntu4) ... Selecting previously unselected package libpsl5:riscv64. Preparing to unpack .../024-libpsl5_0.21.0-1ubuntu1_riscv64.deb ... Unpacking libpsl5:riscv64 (0.21.0-1ubuntu1) ... Selecting previously unselected package libxau6:riscv64. Preparing to unpack .../025-libxau6_1%3a1.0.9-0ubuntu1_riscv64.deb ... Unpacking libxau6:riscv64 (1:1.0.9-0ubuntu1) ... Selecting previously unselected package libxdmcp6:riscv64. Preparing to unpack .../026-libxdmcp6_1%3a1.1.3-0ubuntu1_riscv64.deb ... Unpacking libxdmcp6:riscv64 (1:1.1.3-0ubuntu1) ... Selecting previously unselected package libxcb1:riscv64. Preparing to unpack .../027-libxcb1_1.14-2_riscv64.deb ... Unpacking libxcb1:riscv64 (1.14-2) ... Selecting previously unselected package libx11-data. Preparing to unpack .../028-libx11-data_2%3a1.6.9-2ubuntu1_all.deb ... Unpacking libx11-data (2:1.6.9-2ubuntu1) ... 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Setting up x11-common (1:7.7+19ubuntu14) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libnghttp2-14:riscv64 (1.40.0-1build1) ... Setting up libmagic1:riscv64 (1:5.38-5) ... Setting up gettext-base (0.19.8.1-10build1) ... Setting up file (1:5.38-5) ... Setting up libldap-common (2.4.49+dfsg-2ubuntu2) ... Setting up libjbig0:riscv64 (2.1-3.1build1) ... Setting up libpcre2-16-0:riscv64 (10.34-7) ... Setting up libkrb5support0:riscv64 (1.17-6ubuntu4) ... Setting up libsasl2-modules-db:riscv64 (2.1.27+dfsg-2) ... Setting up tzdata (2020a-0ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Sun May 31 07:49:17 UTC 2020. Universal Time is now: Sun May 31 07:49:17 UTC 2020. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up zip (3.0-11build1) ... Setting up autotools-dev (20180224.1) ... Setting up libpcre2-32-0:riscv64 (10.34-7) ... Setting up libblas3:riscv64 (3.9.0-2) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/riscv64-linux-gnu/libblas.so.3 (libblas.so.3-riscv64-linux-gnu) in auto mode Setting up libswitch-perl (2.17-2) ... Setting up libfreetype6:riscv64 (2.10.1-2) ... Setting up libx11-data (2:1.6.9-2ubuntu1) ... Setting up librtmp1:riscv64 (2.4+20151223.gitfa8646d.1-2build1) ... Setting up libncurses6:riscv64 (6.2-1) ... Setting up libsigsegv2:riscv64 (2.12-2) ... Setting up libfribidi0:riscv64 (1.0.8-2) ... Setting up libpcre32-3:riscv64 (2:8.39-12build1) ... Setting up libtcl8.6:riscv64 (8.6.10+dfsg-1) ... Setting up autopoint (0.19.8.1-10build1) ... Setting up libwebp6:riscv64 (0.6.1-2) ... Setting up pkg-config (0.29.2-1ubuntu1) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up ucf (3.0042) ... Setting up libpcre2-posix2:riscv64 (10.34-7) ... Setting up libk5crypto3:riscv64 (1.17-6ubuntu4) ... 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Setting up fontconfig-config (2.13.1-2ubuntu3) ... Setting up libicu66:riscv64 (66.1-2ubuntu2) ... Setting up libasn1-8-heimdal:riscv64 (7.7.0+dfsg-2) ... Setting up libpng-dev:riscv64 (1.6.37-2) ... Setting up libgfortran-9-dev:riscv64 (9.3.0-13ubuntu1) ... Setting up m4 (1.4.18-4) ... Setting up libxcb-shm0:riscv64 (1.14-2) ... Setting up libpaper-utils (1.1.28) ... Setting up libreadline-dev:riscv64 (8.0-4) ... Setting up libhcrypto4-heimdal:riscv64 (7.7.0+dfsg-2) ... Setting up libthai0:riscv64 (0.1.28-3) ... Setting up libwind0-heimdal:riscv64 (7.7.0+dfsg-2) ... Setting up bsdmainutils (11.1.2ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up liblapack-dev:riscv64 (3.9.0-2) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/lapack/liblapack.so to provide /usr/lib/riscv64-linux-gnu/liblapack.so (liblapack.so-riscv64-linux-gnu) in auto mode Setting up libgssapi-krb5-2:riscv64 (1.17-6ubuntu4) ... Setting up icu-devtools (66.1-2ubuntu2) ... Setting up libssh-4:riscv64 (0.9.4-1ubuntu1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.8.1-1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up libncurses5-dev:riscv64 (6.2-1) ... Setting up libx11-6:riscv64 (2:1.6.9-2ubuntu1) ... Setting up libtiff5:riscv64 (4.1.0+git191117-2build1) ... Setting up libfontconfig1:riscv64 (2.13.1-2ubuntu3) ... Setting up libjpeg8-dev:riscv64 (8c-2ubuntu8) ... Setting up libsm6:riscv64 (2:1.2.3-1) ... Setting up libicu-dev:riscv64 (66.1-2ubuntu2) ... Setting up libxml2:riscv64 (2.9.10+dfsg-5) ... Setting up libxmuu1:riscv64 (2:1.1.3-0ubuntu1) ... Setting up automake (1:1.16.2-1ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up fontconfig (2.13.1-2ubuntu3) ... Regenerating fonts cache... done. Setting up libxrender1:riscv64 (1:0.9.10-1) ... Setting up gfortran-9 (9.3.0-13ubuntu1) ... Setting up libhx509-5-heimdal:riscv64 (7.7.0+dfsg-2) ... Setting up libpango-1.0-0:riscv64 (1.44.7-2ubuntu4) ... Setting up libjpeg-dev:riscv64 (8c-2ubuntu8) ... Setting up libxext6:riscv64 (2:1.3.4-0ubuntu1) ... Setting up man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:9.3.0-1ubuntu2) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:riscv64 (1.16.0-4ubuntu1) ... Setting up libcroco3:riscv64 (0.6.13-1) ... Setting up libxt6:riscv64 (1:1.1.5-1) ... Setting up xauth (1:1.1-0ubuntu1) ... Setting up libxss1:riscv64 (1:1.2.3-1) ... Setting up libpangoft2-1.0-0:riscv64 (1.44.7-2ubuntu4) ... Setting up libpangocairo-1.0-0:riscv64 (1.44.7-2ubuntu4) ... Setting up libkrb5-26-heimdal:riscv64 (7.7.0+dfsg-2) ... Setting up libxft2:riscv64 (2.3.3-0ubuntu1) ... Setting up gettext (0.19.8.1-10build1) ... Setting up libtk8.6:riscv64 (8.6.10-1) ... Setting up libheimntlm0-heimdal:riscv64 (7.7.0+dfsg-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libgssapi3-heimdal:riscv64 (7.7.0+dfsg-2) ... Setting up po-debconf (1.0.21) ... Setting up libldap-2.4-2:riscv64 (2.4.49+dfsg-2ubuntu2) ... Setting up libcurl4:riscv64 (7.68.0-1ubuntu2) ... Setting up libcurl4-openssl-dev:riscv64 (7.68.0-1ubuntu2) ... Setting up r-base-core (4.0.0.20200528-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.3.4-4ubuntu2) ... Setting up r-cran-futile.options (1.0.1-3build1) ... Setting up r-cran-formatr (1.7-2build1) ... Setting up r-bioc-genomeinfodbdata (1.2.3-1build1) ... Setting up r-bioc-biocgenerics (0.34.0-1build1) ... Setting up r-base-dev (4.0.0.20200528-1) ... Setting up r-cran-lambda.r (1.2.4-2build1) ... Setting up r-cran-snow (1:0.4.3-2) ... Setting up r-cran-bitops (1.0-6-4build1) ... Setting up r-bioc-zlibbioc (1.34.0+dfsg-1build1) ... Setting up r-bioc-s4vectors (0.26.1-1build1) ... Setting up r-cran-futile.logger (1.4.3-4build1) ... Setting up r-bioc-iranges (2.22.2-1build1) ... Setting up r-cran-rcurl (1.98-1.2-1build1) ... Setting up r-bioc-biocparallel (1.22.0-1build1) ... Setting up r-bioc-rhtslib (1.20.0+dfsg-1build1) ... Setting up r-bioc-genomeinfodb (1.24.0-1build1) ... Setting up r-bioc-xvector (0.28.0-1) ... Setting up r-bioc-genomicranges (1.40.0+dfsg-1build1) ... Setting up r-bioc-biostrings (2.56.0-1) ... Setting up r-bioc-rsamtools (2.4.0-1build1) ... Setting up dh-autoreconf (19) ... Setting up debhelper (13.1ubuntu1) ... Setting up dh-r (20200314) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.31-0ubuntu9) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-21-generic #25-Ubuntu SMP Tue Mar 31 01:57:06 UTC 2020 riscv64 (riscv64) Toolchain package versions: binutils_2.34-7ubuntu1 dpkg-dev_1.19.7ubuntu3 g++-9_9.3.0-13ubuntu1 gcc-9_9.3.0-13ubuntu1 libc6-dev_2.31-0ubuntu9 libstdc++-9-dev_9.3.0-13ubuntu1 libstdc++6_10.1.0-3ubuntu1 linux-libc-dev_5.4.0-24.28 Package versions: adduser_3.118ubuntu2 advancecomp_2.1-2.1build1 apt_2.1.5 autoconf_2.69-11.1 automake_1:1.16.2-1ubuntu1 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu7 base-passwd_3.5.47 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Maintainer: Ubuntu Developers Uploaders: Andreas Tille Homepage: https://bioconductor.org/packages/BitSeq/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-bitseq Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-bitseq.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 12), dh-r, r-base-dev, r-bioc-rsamtools (>= 1.99.3), r-bioc-s4vectors, r-bioc-iranges, r-bioc-rhtslib, libboost-dev, libcurl4-openssl-dev Package-List: r-bioc-bitseq deb gnu-r optional arch=any Checksums-Sha1: 2e306b0a0622d6161b5dcd54622ad61d11a77d8b 749936 r-bioc-bitseq_1.32.0+dfsg.orig.tar.xz b8f36e5814a0ebade7f3e9a0bee1c172b93b1a6a 5720 r-bioc-bitseq_1.32.0+dfsg-1build1.debian.tar.xz Checksums-Sha256: 16a2c17dcb112bde44b54aafc406536ee9a0e33b67dc50d8e1b555cfa866411a 749936 r-bioc-bitseq_1.32.0+dfsg.orig.tar.xz 6607a3d2ee7f569bd57d65f6680c911f0c02d7049f05cffe6eeec74346623557 5720 r-bioc-bitseq_1.32.0+dfsg-1build1.debian.tar.xz Files: 9fc36484ee6405c95b704cf2366c793b 749936 r-bioc-bitseq_1.32.0+dfsg.orig.tar.xz 6c3713a2032ac288c59c4e59d721141d 5720 r-bioc-bitseq_1.32.0+dfsg-1build1.debian.tar.xz Original-Maintainer: Debian R Packages Maintainers -----BEGIN PGP SIGNATURE----- iQJOBAEBCgA4FiEErEg/aN5yj0PyIC/KVo0w8yGyEz0FAl7TSU4aHHN0ZXZlLmxh bmdhc2VrQHVidW50dS5jb20ACgkQVo0w8yGyEz27wA/+Po+ZV400QCvoBwOgKkDV O2YlcB4JMg4VWTvdd/Wfj0ppmlo1nP5PdvcqN9j3l2RayRdb62/CLZxpIR7ewIX+ RJMVc+poOq3rAcKaqZYoIfYhNnK2U07PaHvUA87Unp97hqskqQKOvkG2DS0tLYtg vtCRiGsYVJRVlr1hxKzt9q9wyh/1jw8n4Qrtzvz2m3WGGZpxhuxIv2/XzEYl09MH iKXtdqZPjZqjm6gi8zVZP4+g0py7riayrrFOm59P4Vie/Zbp2PuQtht2wY1PMZOu 3qUUe7ZIbH8TqtbJmDE868I4gkhMXWSwrZA96FR3f6M4v9Gcsl+CEAVyNKOeaw1r IyGqpdBZtxR3g4JQZXw+rI67mhYEjmNjQd6oKlu5CtHoxptjPmpb8VCjGBiB1mUq VBsVNJLw45ma3H89Cxs5RziC9oG58QYDhCi1VXBbuwUzHjj8reEaRg6DuQgxoEsy KWl/xzri3yaFutoszkP71ZhHzFb+PSE5IpuX6iyA1lweMrFHj5wNv+87obtJlpKV vzogbuTjubd0HrmnZvFWpegocfe29OSzVO3oqc8uquhDZSmA64Kyb8GepZb+wzCf mnRPJM5qZYoX76MKBGhPdX9O9ZjiKCwLZC1sRqLFDl0bobQQP0W5XheDYvlAMT6V ONIqW6sNhZWaouB/XE/nLrM= =MwFG -----END PGP SIGNATURE----- gpgv: Signature made Sun May 31 06:06:06 2020 UTC gpgv: using RSA key AC483F68DE728F43F2202FCA568D30F321B2133D gpgv: issuer "steve.langasek@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-bioc-bitseq_1.32.0+dfsg-1build1.dsc dpkg-source: info: extracting r-bioc-bitseq in /<> dpkg-source: info: unpacking r-bioc-bitseq_1.32.0+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-bitseq_1.32.0+dfsg-1build1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=8 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-19385913 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-19385913 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-19385913 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package r-bioc-bitseq dpkg-buildpackage: info: source version 1.32.0+dfsg-1build1 dpkg-buildpackage: info: source distribution groovy dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary-arch dh binary-arch --buildsystem R dh_update_autotools_config -a -O--buildsystem=R dh_autoreconf -a -O--buildsystem=R dh_auto_configure -a -O--buildsystem=R dh_auto_build -a -O--buildsystem=R dh_auto_test -a -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=R dh_prep -a -O--buildsystem=R dh_auto_install -a -O--buildsystem=R I: R Package: BitSeq Version: 1.32.0 I: Building using R version 4.0.0.20200528-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Sun, 31 May 2020 06:06:06 +0000 mkdir -p /<>/r-bioc-bitseq-1.32.0\+dfsg/debian/r-bioc-bitseq/usr/lib/R/site-library R CMD INSTALL -l /<>/r-bioc-bitseq-1.32.0\+dfsg/debian/r-bioc-bitseq/usr/lib/R/site-library --clean . "--built-timestamp='Sun, 31 May 2020 06:06:06 +0000'" * installing *source* package ‘BitSeq’ ... ** using staged installation configure: Version def: -DBS_VERSION=\"1.32.0\" checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ -std=gnu++11 accepts -g... yes checking for g++ -std=gnu++11 option to support OpenMP... -fopenmp configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/Makevars.win ** libs make[1]: Entering directory '/<>/src' g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ArgumentParser.cpp -o ArgumentParser.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c CollapsedSampler.cpp -o CollapsedSampler.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c FileHeader.cpp -o FileHeader.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c GibbsParameters.cpp -o GibbsParameters.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c GibbsSampler.cpp -o GibbsSampler.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c MyTimer.cpp -o MyTimer.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c PosteriorSamples.cpp -o PosteriorSamples.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_BitSeq.cpp -o R_init_BitSeq.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ReadDistribution.cpp -o ReadDistribution.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rhtslib_bam_plbuf.c -o Rhtslib_bam_plbuf.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rhtslib_sam.c -o Rhtslib_sam.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Sampler.cpp -o Sampler.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SimpleSparse.cpp -o SimpleSparse.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c TagAlignments.cpp -o TagAlignments.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c TranscriptExpression.cpp -o TranscriptExpression.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c TranscriptInfo.cpp -o TranscriptInfo.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c TranscriptSequence.cpp -o TranscriptSequence.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c VariationalBayes.cpp -o VariationalBayes.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c common.cpp -o common.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c estimateDE.cpp -o estimateDE.o estimateDE.cpp:57:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 57 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ estimateDE.cpp:57:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 57 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c estimateExpression.cpp -o estimateExpression.o estimateExpression.cpp:532:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 532 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ estimateExpression.cpp:532:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 532 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c estimateHyperPar.cpp -o estimateHyperPar.o estimateHyperPar.cpp:62:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 62 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ estimateHyperPar.cpp:62:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 62 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c estimateVBExpression.cpp -o estimateVBExpression.o estimateVBExpression.cpp:126:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 126 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ estimateVBExpression.cpp:126:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 126 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c getGeneExpression.cpp -o getGeneExpression.o getGeneExpression.cpp:33:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 33 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ getGeneExpression.cpp:33:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 33 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c getVariance.cpp -o getVariance.o getVariance.cpp:28:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 28 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ getVariance.cpp:28:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 28 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c getWithinGeneExpression.cpp -o getWithinGeneExpression.o getWithinGeneExpression.cpp:54:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 54 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ getWithinGeneExpression.cpp:54:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 54 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lowess.cpp -o lowess.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c misc.cpp -o misc.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c parseAlignment.cpp -o parseAlignment.o parseAlignment.cpp:102:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 102 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ parseAlignment.cpp:102:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 102 | if(args.verbose)buildTime(argv[0],__DATE__,__TIME__); | ^~~~~~~~ g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -DPACKAGE_NAME=\"BitSeq\" -DPACKAGE_TARNAME=\"bitseq\" -DPACKAGE_VERSION=\"1.10.x\" -DPACKAGE_STRING=\"BitSeq\ 1.10.x\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DBS_VERSION=\"1.32.0\" -DSUPPORT_OPENMP=1 -DBIOC_BUILD=1 -I'/usr/lib/R/site-library/Rhtslib/include' -I. -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c transposeFiles.cpp -o transposeFiles.o g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o BitSeq.so ArgumentParser.o CollapsedSampler.o FileHeader.o GibbsParameters.o GibbsSampler.o MyTimer.o PosteriorSamples.o R_init_BitSeq.o ReadDistribution.o Rhtslib_bam_plbuf.o Rhtslib_sam.o Sampler.o SimpleSparse.o TagAlignments.o TranscriptExpression.o TranscriptInfo.o TranscriptSequence.o VariationalBayes.o common.o estimateDE.o estimateExpression.o estimateHyperPar.o estimateVBExpression.o getGeneExpression.o getVariance.o getWithinGeneExpression.o lowess.o misc.o parseAlignment.o transposeFiles.o /usr/lib/R/site-library/Rhtslib/usrlib/libhts.a -lcurl -fopenmp -L/usr/lib/R/lib -lR make[1]: Leaving directory '/<>/src' make[1]: Entering directory '/<>/src' make[1]: Leaving directory '/<>/src' installing to /<>/debian/r-bioc-bitseq/usr/lib/R/site-library/00LOCK-r-bioc-bitseq-1.32.0+dfsg/00new/BitSeq/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BitSeq) rm -f /<>/r-bioc-bitseq-1.32.0\+dfsg/debian/r-bioc-bitseq/usr/lib/R/site-library/BitSeq/LICENSE Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 292. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 293. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 296. I: Using r-bioc-rsamtools for Depends:Rsamtools (>= 1.99.3) I: Using r-bioc-edger for Suggests:edgeR I: Using r-bioc-deseq for Suggests:DESeq W: Cannot find a debian package for Suggests:BiocStyle I: Using r-bioc-s4vectors for Imports:S4Vectors I: Using r-bioc-iranges for Imports:IRanges I: Using r-bioc-rhtslib for LinkingTo:Rhtslib (>= 1.15.5) I: BioConductor API version: r-api-bioc-3.11 dh_installdocs -a -O--buildsystem=R dh_installchangelogs -a -O--buildsystem=R dh_installinit -a -O--buildsystem=R dh_installsystemduser -a -O--buildsystem=R dh_perl -a -O--buildsystem=R dh_link -a -O--buildsystem=R dh_strip_nondeterminism -a -O--buildsystem=R dh_compress -a -O--buildsystem=R dh_fixperms -a -O--buildsystem=R dh_missing -a -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -a -O--buildsystem=R dh_gencontrol -a -O--buildsystem=R dh_md5sums -a -O--buildsystem=R dh_builddeb -a -O--buildsystem=R INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing r-bioc-bitseq (in debian/r-bioc-bitseq); do_strip: , oemstrip: pkgstriptranslations: processing r-bioc-bitseq-dbgsym (in debian/.debhelper/r-bioc-bitseq/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/r-bioc-bitseq/DEBIAN/control, package r-bioc-bitseq, directory debian/r-bioc-bitseq pkgstripfiles: Running PNG optimization (using 8 cpus) for package r-bioc-bitseq ... pkgstripfiles: No PNG files. pkgstripfiles: processing control file: debian/.debhelper/r-bioc-bitseq/dbgsym-root/DEBIAN/control, package r-bioc-bitseq-dbgsym, directory debian/.debhelper/r-bioc-bitseq/dbgsym-root dpkg-deb: building package 'r-bioc-bitseq-dbgsym' in 'debian/.debhelper/scratch-space/build-r-bioc-bitseq/r-bioc-bitseq-dbgsym_1.32.0+dfsg-1build1_riscv64.deb'. dpkg-deb: building package 'r-bioc-bitseq' in '../r-bioc-bitseq_1.32.0+dfsg-1build1_riscv64.deb'. Renaming r-bioc-bitseq-dbgsym_1.32.0+dfsg-1build1_riscv64.deb to r-bioc-bitseq-dbgsym_1.32.0+dfsg-1build1_riscv64.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../r-bioc-bitseq_1.32.0+dfsg-1build1_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-05-31T08:09:33Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-bioc-bitseq_1.32.0+dfsg-1build1_riscv64.changes: -------------------------------------------------- Format: 1.8 Date: Sun, 31 May 2020 06:06:06 +0000 Source: r-bioc-bitseq Binary: r-bioc-bitseq Architecture: riscv64 Version: 1.32.0+dfsg-1build1 Distribution: groovy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Steve Langasek Description: r-bioc-bitseq - transcript expression inference and analysis for RNA-seq data Changes: r-bioc-bitseq (1.32.0+dfsg-1build1) groovy; urgency=medium . * No-change rebuild against r-api-4.0 Checksums-Sha1: 7618b235d0134ed431d1651f1418f62d412612bc 2158260 r-bioc-bitseq-dbgsym_1.32.0+dfsg-1build1_riscv64.ddeb be243143968812782b000f7687ecb29f0c47265f 9731 r-bioc-bitseq_1.32.0+dfsg-1build1_riscv64.buildinfo a3b915792e76ff2d4f9e8e1eb5d2b9cefc54f193 1123228 r-bioc-bitseq_1.32.0+dfsg-1build1_riscv64.deb Checksums-Sha256: 156b036aa3ca22d0c8888ec494f4daa0e2825f236ca646dcd7e7c64d925060c4 2158260 r-bioc-bitseq-dbgsym_1.32.0+dfsg-1build1_riscv64.ddeb a5fc1457097ca2d47da0219843588f57e03e98ec7f393b322c22f67fe093bb76 9731 r-bioc-bitseq_1.32.0+dfsg-1build1_riscv64.buildinfo 84d9a09e367035c60bd7e52488785ced26352d7c0ef135dddb3545a4fba90028 1123228 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fa50c0cda330583f30ca3847b44905ac 1123228 r-bioc-bitseq_1.32.0+dfsg-1build1_riscv64.deb Checksums-Sha1: 7618b235d0134ed431d1651f1418f62d412612bc 2158260 r-bioc-bitseq-dbgsym_1.32.0+dfsg-1build1_riscv64.ddeb a3b915792e76ff2d4f9e8e1eb5d2b9cefc54f193 1123228 r-bioc-bitseq_1.32.0+dfsg-1build1_riscv64.deb Checksums-Sha256: 156b036aa3ca22d0c8888ec494f4daa0e2825f236ca646dcd7e7c64d925060c4 2158260 r-bioc-bitseq-dbgsym_1.32.0+dfsg-1build1_riscv64.ddeb 84d9a09e367035c60bd7e52488785ced26352d7c0ef135dddb3545a4fba90028 1123228 r-bioc-bitseq_1.32.0+dfsg-1build1_riscv64.deb Build-Origin: Ubuntu Build-Architecture: riscv64 Build-Date: Sun, 31 May 2020 08:09:26 +0000 Build-Path: /<> Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.2-1ubuntu1), autopoint (= 0.19.8.1-10build1), autotools-dev (= 20180224.1), base-files (= 11ubuntu7), base-passwd (= 3.5.47), bash (= 5.0-6ubuntu1), binutils (= 2.34-7ubuntu1), binutils-common (= 2.34-7ubuntu1), 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9.3.0-13ubuntu1), grep (= 3.4-1), groff-base (= 1.22.4-5), gzip (= 1.10-2ubuntu1), hostname (= 3.23), icu-devtools (= 66.1-2ubuntu2), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-8), libarchive-zip-perl (= 1.68-1), libasn1-8-heimdal (= 7.7.0+dfsg-2), libatomic1 (= 10.1.0-3ubuntu1), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-2ubuntu6), libaudit1 (= 1:2.8.5-2ubuntu6), libbinutils (= 2.34-7ubuntu1), libblas-dev (= 3.9.0-2), libblas3 (= 3.9.0-2), libblkid1 (= 2.34-0.1ubuntu9), libboost-dev (= 1.71.0.0ubuntu4), libboost1.71-dev (= 1.71.0-6ubuntu8), libbrotli1 (= 1.0.7-6.1), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-3), libbz2-dev (= 1.0.8-3), libc-bin (= 2.31-0ubuntu9), libc-dev-bin (= 2.31-0ubuntu9), libc6 (= 2.31-0ubuntu9), libc6-dev (= 2.31-0ubuntu9), libcairo2 (= 1.16.0-4ubuntu1), libcap-ng0 (= 0.7.9-2.1build1), libcc1-0 (= 10.1.0-3ubuntu1), libcom-err2 (= 1.45.6-1ubuntu1), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.15-1ubuntu1), libcrypt1 (= 1:4.4.15-1ubuntu1), libctf-nobfd0 (= 2.34-7ubuntu1), libctf0 (= 2.34-7ubuntu1), libcurl4 (= 7.68.0-1ubuntu2), libcurl4-openssl-dev (= 7.68.0-1ubuntu2), libdatrie1 (= 0.2.12-3), libdb5.3 (= 5.3.28+dfsg1-0.6ubuntu2), libdebconfclient0 (= 0.251ubuntu1), libdebhelper-perl (= 13.1ubuntu1), libdpkg-perl (= 1.19.7ubuntu3), libelf1 (= 0.176-1.1build1), libexpat1 (= 2.2.9-1build1), libffi7 (= 3.3-4), libfile-stripnondeterminism-perl (= 1.8.1-1), libfile-which-perl (= 1.23-1), libfontconfig1 (= 2.13.1-2ubuntu3), libfreetype6 (= 2.10.1-2), libfribidi0 (= 1.0.8-2), libgcc-9-dev (= 9.3.0-13ubuntu1), libgcc-s1 (= 10.1.0-3ubuntu1), libgcrypt20 (= 1.8.5-5ubuntu1), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libgfortran-9-dev (= 9.3.0-13ubuntu1), libgfortran5 (= 10.1.0-3ubuntu1), libglib2.0-0 (= 2.64.3-1), libgmp10 (= 2:6.2.0+dfsg-4), libgnutls30 (= 3.6.13-2ubuntu1), libgomp1 (= 10.1.0-3ubuntu1), libgpg-error0 (= 1.37-1), libgraphite2-3 (= 1.3.14-1), libgssapi-krb5-2 (= 1.17-6ubuntu4), libgssapi3-heimdal (= 7.7.0+dfsg-2), libharfbuzz0b (= 2.6.4-1ubuntu4), libhcrypto4-heimdal (= 7.7.0+dfsg-2), libheimbase1-heimdal (= 7.7.0+dfsg-2), libheimntlm0-heimdal (= 7.7.0+dfsg-2), libhogweed5 (= 3.5.1+really3.5.1-2), libhx509-5-heimdal (= 7.7.0+dfsg-2), libice6 (= 2:1.0.10-0ubuntu1), libicu-dev (= 66.1-2ubuntu2), libicu66 (= 66.1-2ubuntu2), libidn2-0 (= 2.3.0-1), libisl22 (= 0.22.1-1), libjbig0 (= 2.1-3.1build1), libjpeg-dev (= 8c-2ubuntu8), libjpeg-turbo8 (= 2.0.3-0ubuntu1), libjpeg-turbo8-dev (= 2.0.3-0ubuntu1), libjpeg8 (= 8c-2ubuntu8), libjpeg8-dev (= 8c-2ubuntu8), libk5crypto3 (= 1.17-6ubuntu4), libkeyutils1 (= 1.6.1-2ubuntu1), libkrb5-26-heimdal (= 7.7.0+dfsg-2), libkrb5-3 (= 1.17-6ubuntu4), libkrb5support0 (= 1.17-6ubuntu4), liblapack-dev (= 3.9.0-2), liblapack3 (= 3.9.0-2), libldap-2.4-2 (= 2.4.49+dfsg-2ubuntu2), libldap-common (= 2.4.49+dfsg-2ubuntu2), liblz4-1 (= 1.9.2-2), liblzma-dev (= 5.2.4-1), liblzma5 (= 5.2.4-1), libmagic-mgc (= 1:5.38-5), libmagic1 (= 1:5.38-5), libmount1 (= 2.34-0.1ubuntu9), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libncurses-dev (= 6.2-1), libncurses5-dev (= 6.2-1), libncurses6 (= 6.2-1), libncursesw6 (= 6.2-1), libnettle7 (= 3.5.1+really3.5.1-2), libnghttp2-14 (= 1.40.0-1build1), libp11-kit0 (= 0.23.20-1build1), libpam-modules (= 1.3.1-5ubuntu4), libpam-modules-bin (= 1.3.1-5ubuntu4), libpam-runtime (= 1.3.1-5ubuntu4), libpam0g (= 1.3.1-5ubuntu4), libpango-1.0-0 (= 1.44.7-2ubuntu4), libpangocairo-1.0-0 (= 1.44.7-2ubuntu4), libpangoft2-1.0-0 (= 1.44.7-2ubuntu4), libpaper-utils (= 1.1.28), libpaper1 (= 1.1.28), libpcre16-3 (= 2:8.39-12build1), libpcre2-16-0 (= 10.34-7), libpcre2-32-0 (= 10.34-7), libpcre2-8-0 (= 10.34-7), libpcre2-dev (= 10.34-7), libpcre2-posix2 (= 10.34-7), libpcre3 (= 2:8.39-12build1), libpcre3-dev (= 2:8.39-12build1), libpcre32-3 (= 2:8.39-12build1), libpcrecpp0v5 (= 2:8.39-12build1), libperl5.30 (= 5.30.2-1), libpipeline1 (= 1.5.2-2build1), libpixman-1-0 (= 0.38.4-0ubuntu1), libpng-dev (= 1.6.37-2), libpng16-16 (= 1.6.37-2), libpsl5 (= 0.21.0-1ubuntu1), libreadline-dev (= 8.0-4), libreadline8 (= 8.0-4), libroken18-heimdal (= 7.7.0+dfsg-2), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build1), libsasl2-2 (= 2.1.27+dfsg-2), libsasl2-modules-db (= 2.1.27+dfsg-2), libselinux1 (= 3.0-1build2), libsigsegv2 (= 2.12-2), libsm6 (= 2:1.2.3-1), libsmartcols1 (= 2.34-0.1ubuntu9), libsqlite3-0 (= 3.32.1-1), libssh-4 (= 0.9.4-1ubuntu1), libssl1.1 (= 1.1.1f-1ubuntu2), libstdc++-9-dev (= 9.3.0-13ubuntu1), libstdc++6 (= 10.1.0-3ubuntu1), libsub-override-perl (= 0.09-2), libswitch-perl (= 2.17-2), libsystemd0 (= 245.5-3ubuntu1), libtasn1-6 (= 4.16.0-2), libtcl8.6 (= 8.6.10+dfsg-1), libthai-data (= 0.1.28-3), libthai0 (= 0.1.28-3), libtiff5 (= 4.1.0+git191117-2build1), libtinfo6 (= 6.2-1), libtk8.6 (= 8.6.10-1), libtool (= 2.4.6-14), libuchardet0 (= 0.0.6-3build1), libudev1 (= 245.5-3ubuntu1), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1ubuntu9), libwebp6 (= 0.6.1-2), libwind0-heimdal (= 7.7.0+dfsg-2), libx11-6 (= 2:1.6.9-2ubuntu1), libx11-data (= 2:1.6.9-2ubuntu1), libxau6 (= 1:1.0.9-0ubuntu1), libxcb-render0 (= 1.14-2), libxcb-shm0 (= 1.14-2), libxcb1 (= 1.14-2), libxdmcp6 (= 1:1.1.3-0ubuntu1), libxext6 (= 2:1.3.4-0ubuntu1), libxft2 (= 2.3.3-0ubuntu1), libxml2 (= 2.9.10+dfsg-5), libxmuu1 (= 2:1.1.3-0ubuntu1), libxrender1 (= 1:0.9.10-1), libxss1 (= 1:1.2.3-1), libxt6 (= 1:1.1.5-1), libzstd1 (= 1.4.4+dfsg-3), linux-libc-dev (= 5.4.0-24.28), login (= 1:4.8.1-1ubuntu5), lsb-base (= 11.1.0ubuntu2), m4 (= 1.4.18-4), make (= 4.3-1), man-db (= 2.9.1-1), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2-1), ncurses-bin (= 6.2-1), openssl (= 1.1.1f-1ubuntu2), patch (= 2.7.6-6), perl (= 5.30.2-1), perl-base (= 5.30.2-1), perl-modules-5.30 (= 5.30.2-1), pkg-config (= 0.29.2-1ubuntu1), po-debconf (= 1.0.21), r-base-core (= 4.0.0.20200528-1), r-base-dev (= 4.0.0.20200528-1), r-bioc-biocgenerics (= 0.34.0-1build1), r-bioc-biocparallel (= 1.22.0-1build1), r-bioc-biostrings (= 2.56.0-1), r-bioc-genomeinfodb (= 1.24.0-1build1), r-bioc-genomeinfodbdata (= 1.2.3-1build1), r-bioc-genomicranges (= 1.40.0+dfsg-1build1), r-bioc-iranges (= 2.22.2-1build1), r-bioc-rhtslib (= 1.20.0+dfsg-1build1), r-bioc-rsamtools (= 2.4.0-1build1), r-bioc-s4vectors (= 0.26.1-1build1), r-bioc-xvector (= 0.28.0-1), r-bioc-zlibbioc (= 1.34.0+dfsg-1build1), r-cran-bh (= 1.66.0-1), r-cran-bitops (= 1.0-6-4build1), r-cran-crayon (= 1.3.4-4ubuntu2), r-cran-formatr (= 1.7-2build1), r-cran-futile.logger (= 1.4.3-4build1), r-cran-futile.options (= 1.0.1-3build1), r-cran-lambda.r (= 1.2.4-2build1), r-cran-rcurl (= 1.98-1.2-1build1), r-cran-snow (= 1:0.4.3-2), readline-common (= 8.0-4), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-3ubuntu1), tar (= 1.30+dfsg-7), tzdata (= 2020a-0ubuntu1), ucf (= 3.0042), unzip (= 6.0-25ubuntu1), util-linux (= 2.34-0.1ubuntu9), x11-common (= 1:7.7+19ubuntu14), xauth (= 1:1.1-0ubuntu1), xdg-utils (= 1.1.3-2ubuntu1), xz-utils (= 5.2.4-1), zip (= 3.0-11build1), zlib1g (= 1:1.2.11.dfsg-2ubuntu1), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu1) Environment: DEB_BUILD_OPTIONS="parallel=8" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1590905166" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-bioc-bitseq_1.32.0+dfsg-1build1_riscv64.deb --------------------------------------------- new Debian package, version 2.0. size 1123228 bytes: control archive=1976 bytes. 1351 bytes, 23 lines control 2861 bytes, 36 lines md5sums Package: r-bioc-bitseq Version: 1.32.0+dfsg-1build1 Architecture: riscv64 Maintainer: Ubuntu Developers Installed-Size: 5730 Depends: r-base-core (>= 4.0.0.20200528-1), r-api-4.0, r-api-bioc-3.11, r-bioc-rsamtools (>= 1.99.3), r-bioc-s4vectors, r-bioc-iranges, r-bioc-rhtslib (>= 1.15.5), libc6 (>= 2.27), libcurl4 (>= 7.18.0), libgcc-s1 (>= 4.2), libgomp1 (>= 6), libstdc++6 (>= 5.2) Suggests: r-bioc-edger, r-bioc-deseq Section: gnu-r Priority: optional Homepage: https://bioconductor.org/packages/BitSeq/ Description: transcript expression inference and analysis for RNA-seq data The BitSeq package is targeted for transcript expression analysis and differential expression analysis of RNA-seq data in two stage process. In the first stage it uses Bayesian inference methodology to infer expression of individual transcripts from individual RNA-seq experiments. The second stage of BitSeq embraces the differential expression analysis of transcript expression. Providing expression estimates from replicates of multiple conditions, Log-Normal model of the estimates is used for inferring the condition mean transcript expression and ranking the transcripts based on the likelihood of differential expression. 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Architecture: riscv64 Build Type: any Build-Space: 17056 Build-Time: 1160 Distribution: groovy-proposed Host Architecture: riscv64 Install-Time: 392 Job: r-bioc-bitseq_1.32.0+dfsg-1build1.dsc Machine Architecture: riscv64 Package: r-bioc-bitseq Package-Time: 1583 Source-Version: 1.32.0+dfsg-1build1 Space: 17056 Status: successful Version: 1.32.0+dfsg-1build1 -------------------------------------------------------------------------------- Finished at 2020-05-31T08:09:33Z Build needed 00:26:23, 17056k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=groovy --arch=riscv64 PACKAGEBUILD-19385913 Scanning for processes to kill in build PACKAGEBUILD-19385913 RUN: /usr/share/launchpad-buildd/bin/in-target umount-chroot --backend=chroot --series=groovy --arch=riscv64 PACKAGEBUILD-19385913 Stopping target for build PACKAGEBUILD-19385913 RUN: /usr/share/launchpad-buildd/bin/in-target remove-build --backend=chroot --series=groovy --arch=riscv64 PACKAGEBUILD-19385913 Removing build PACKAGEBUILD-19385913