https://launchpad.net/ubuntu/+source/r-bioc-cner/1.22.0+dfsg-1/+build/18093302 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-019 4.4.0-168-generic #197-Ubuntu SMP Wed Nov 6 11:15:24 UTC 2019 aarch64 Buildd toolchain package versions: launchpad-buildd_180 python-lpbuildd_180 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 14 Nov 17:37:52 ntpdate[1927]: adjust time server 10.211.37.1 offset 0.051170 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=arm64 PACKAGEBUILD-18093302 --image-type chroot /home/buildd/filecache-default/9d93b4075e16ce7cfbdf01f21507152b0a173b17 Creating target for build PACKAGEBUILD-18093302 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=arm64 PACKAGEBUILD-18093302 Starting target for build PACKAGEBUILD-18093302 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=arm64 PACKAGEBUILD-18093302 'deb http://ftpmaster.internal/ubuntu focal main universe' 'deb http://ftpmaster.internal/ubuntu focal-security main universe' 'deb http://ftpmaster.internal/ubuntu focal-updates main universe' 'deb http://ftpmaster.internal/ubuntu focal-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-18093302 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=arm64 PACKAGEBUILD-18093302 Updating target for build PACKAGEBUILD-18093302 Get:1 http://ftpmaster.internal/ubuntu focal InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu focal-security InRelease [79.7 kB] Get:3 http://ftpmaster.internal/ubuntu focal-updates InRelease [79.7 kB] Get:4 http://ftpmaster.internal/ubuntu focal-proposed InRelease [107 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main arm64 Packages [946 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main Translation-en [507 kB] Get:7 http://ftpmaster.internal/ubuntu focal/universe arm64 Packages [8582 kB] Get:8 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5205 kB] Get:9 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 Packages [54.1 kB] Get:10 http://ftpmaster.internal/ubuntu focal-proposed/main Translation-en [31.8 kB] Get:11 http://ftpmaster.internal/ubuntu focal-proposed/universe arm64 Packages [294 kB] Get:12 http://ftpmaster.internal/ubuntu focal-proposed/universe Translation-en [164 kB] Fetched 16.3 MB in 5s (3042 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libhogweed4 libnettle6 libperl5.28 perl-modules-5.28 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libhogweed5 libnettle7 libperl5.30 perl-modules-5.30 The following packages will be upgraded: base-files bash binutils binutils-aarch64-linux-gnu binutils-common bzip2 cpp-9 debianutils g++-9 gcc-9 gcc-9-base hostname libacl1 libapparmor1 libasan5 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libbz2-1.0 libcap-ng0 libcap2 libcc1-0 libcryptsetup12 libdebconfclient0 libgcc-9-dev libgcc1 libgcrypt20 libgnutls30 libgomp1 libitm1 libjson-c4 libkmod2 liblockfile-bin liblockfile1 liblsan0 liblz4-1 libncurses6 libncursesw6 libp11-kit0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsqlite3-0 libstdc++-9-dev libstdc++6 libsystemd0 libtinfo6 libtsan0 libubsan1 libudev1 linux-libc-dev lsb-base ncurses-base ncurses-bin perl perl-base systemd systemd-sysv sysvinit-utils 62 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. Need to get 50.6 MB of archives. After this operation, 47.1 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu focal/main arm64 base-files arm64 11ubuntu1 [60.4 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main arm64 debianutils arm64 4.9 [85.7 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main arm64 bash arm64 5.0-5ubuntu1 [603 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main arm64 hostname arm64 3.23 [11.1 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main arm64 ncurses-bin arm64 6.1+20191019-1ubuntu1 [166 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main arm64 perl-modules-5.30 all 5.30.0-9 [2739 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main arm64 libperl5.30 arm64 5.30.0-9 [3764 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main arm64 perl arm64 5.30.0-9 [224 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main arm64 perl-base arm64 5.30.0-9 [1389 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main arm64 bzip2 arm64 1.0.8-2 [33.0 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main arm64 libbz2-1.0 arm64 1.0.8-2 [32.9 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main arm64 ncurses-base all 6.1+20191019-1ubuntu1 [17.9 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main arm64 lsb-base all 11.1.0ubuntu1 [12.2 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main arm64 sysvinit-utils arm64 2.96-1ubuntu1 [20.5 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main arm64 systemd-sysv arm64 243-3ubuntu1 [9364 B] Get:16 http://ftpmaster.internal/ubuntu focal/main arm64 libacl1 arm64 2.2.53-5 [17.7 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main arm64 libapparmor1 arm64 2.13.3-5ubuntu5 [33.5 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main arm64 libaudit-common all 1:2.8.5-2ubuntu2 [4080 B] Get:19 http://ftpmaster.internal/ubuntu focal/main arm64 libcap-ng0 arm64 0.7.9-2.1 [10.5 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main arm64 libaudit1 arm64 1:2.8.5-2ubuntu2 [38.3 kB] Get:21 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 libcap2 arm64 1:2.27-1 [13.9 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main arm64 libjson-c4 arm64 0.13.1+dfsg-6 [28.0 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main arm64 libcryptsetup12 arm64 2:2.2.2-1ubuntu1 [166 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main arm64 libnettle7 arm64 3.5.1+really3.5.1-2 [124 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main arm64 libhogweed5 arm64 3.5.1+really3.5.1-2 [134 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main arm64 libp11-kit0 arm64 0.23.18.1-2 [177 kB] Get:27 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 libgnutls30 arm64 3.6.10-4 [713 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main arm64 libkmod2 arm64 26-3ubuntu1 [39.5 kB] Get:29 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 liblz4-1 arm64 1.9.2-2 [52.7 kB] Get:30 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 libseccomp2 arm64 2.4.1-0ubuntu0.19.10.4 [39.9 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main arm64 systemd arm64 243-3ubuntu1 [3340 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main arm64 libsystemd0 arm64 243-3ubuntu1 [242 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main arm64 libcc1-0 arm64 9.2.1-19ubuntu1 [46.2 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main arm64 binutils-aarch64-linux-gnu arm64 2.33.1-1ubuntu1 [2021 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main arm64 libbinutils arm64 2.33.1-1ubuntu1 [470 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main arm64 binutils-common arm64 2.33.1-1ubuntu1 [203 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main arm64 binutils arm64 2.33.1-1ubuntu1 [3376 B] Get:38 http://ftpmaster.internal/ubuntu focal/main arm64 libgomp1 arm64 9.2.1-19ubuntu1 [80.5 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main arm64 libitm1 arm64 9.2.1-19ubuntu1 [25.1 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main arm64 libatomic1 arm64 9.2.1-19ubuntu1 [9168 B] Get:41 http://ftpmaster.internal/ubuntu focal/main arm64 libasan5 arm64 9.2.1-19ubuntu1 [365 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main arm64 liblsan0 arm64 9.2.1-19ubuntu1 [126 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main arm64 libtsan0 arm64 9.2.1-19ubuntu1 [284 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main arm64 libubsan1 arm64 9.2.1-19ubuntu1 [121 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main arm64 gcc-9-base arm64 9.2.1-19ubuntu1 [19.2 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main arm64 libstdc++6 arm64 9.2.1-19ubuntu1 [466 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main arm64 g++-9 arm64 9.2.1-19ubuntu1 [9463 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main arm64 libstdc++-9-dev arm64 9.2.1-19ubuntu1 [1674 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main arm64 libgcc-9-dev arm64 9.2.1-19ubuntu1 [914 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main arm64 gcc-9 arm64 9.2.1-19ubuntu1 [9108 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main arm64 cpp-9 arm64 9.2.1-19ubuntu1 [8345 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main arm64 libgcc1 arm64 1:9.2.1-19ubuntu1 [34.1 kB] Get:53 http://ftpmaster.internal/ubuntu focal/main arm64 libattr1 arm64 1:2.4.48-5 [12.5 kB] Get:54 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 libdebconfclient0 arm64 0.250ubuntu1 [6304 B] Get:55 http://ftpmaster.internal/ubuntu focal/main arm64 libgcrypt20 arm64 1.8.5-3ubuntu1 [350 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main arm64 libncurses6 arm64 6.1+20191019-1ubuntu1 [91.8 kB] Get:57 http://ftpmaster.internal/ubuntu focal/main arm64 libtinfo6 arm64 6.1+20191019-1ubuntu1 [80.4 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main arm64 libncursesw6 arm64 6.1+20191019-1ubuntu1 [120 kB] Get:59 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 libselinux1 arm64 2.9-3 [65.6 kB] Get:60 http://ftpmaster.internal/ubuntu focal/main arm64 libsemanage-common all 2.9-3build1 [9736 B] Get:61 http://ftpmaster.internal/ubuntu focal/main arm64 libsemanage1 arm64 2.9-3build1 [79.3 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main arm64 libudev1 arm64 243-3ubuntu1 [72.7 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main arm64 libsqlite3-0 arm64 3.30.1-1 [498 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main arm64 liblockfile-bin arm64 1.16-1.1 [11.3 kB] Get:65 http://ftpmaster.internal/ubuntu focal/main arm64 liblockfile1 arm64 1.16-1.1 [6440 B] Get:66 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 linux-libc-dev arm64 5.3.0-21.22 [1065 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 50.6 MB in 9s (5336 kB/s) (Reading database ... 12731 files and directories currently installed.) Preparing to unpack .../base-files_11ubuntu1_arm64.deb ... Unpacking base-files (11ubuntu1) over (10.2ubuntu7) ... Setting up base-files (11ubuntu1) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Updating /root/.profile to current default. (Reading database ... 12731 files and directories currently installed.) Preparing to unpack .../debianutils_4.9_arm64.deb ... Unpacking debianutils (4.9) over (4.8.6.3) ... Setting up debianutils (4.9) ... (Reading database ... 12731 files and directories currently installed.) Preparing to unpack .../bash_5.0-5ubuntu1_arm64.deb ... Unpacking bash (5.0-5ubuntu1) over (5.0-4ubuntu1) ... 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RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-18093302 arm64 focal-proposed -c chroot:build-PACKAGEBUILD-18093302 --arch=arm64 --dist=focal-proposed --nolog r-bioc-cner_1.22.0+dfsg-1.dsc Initiating build PACKAGEBUILD-18093302 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-168-generic #197-Ubuntu SMP Wed Nov 6 11:15:24 UTC 2019 aarch64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-019.buildd +==============================================================================+ | r-bioc-cner 1.22.0+dfsg-1 (arm64) 14 Nov 2019 17:38 | +==============================================================================+ Package: r-bioc-cner Version: 1.22.0+dfsg-1 Source Version: 1.22.0+dfsg-1 Distribution: focal-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 I: NOTICE: Log filtering will replace 'build/r-bioc-cner-sIq9Ug/r-bioc-cner-1.22.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-cner-sIq9Ug' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-18093302/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-bioc-cner_1.22.0+dfsg-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-lfZFMZ/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-lfZFMZ/apt_archive ./ InRelease Get:2 copy:/<>/resolver-lfZFMZ/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-lfZFMZ/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-lfZFMZ/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-lfZFMZ/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (130 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libhogweed4 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-lfZFMZ/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14668 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper-compat (= 12), dh-r (>= 20180527), r-base-dev, r-bioc-biostrings (>= 2.33.4), r-cran-dbi (>= 0.7), r-cran-rsqlite, r-bioc-genomeinfodb (>= 1.1.3), r-bioc-genomicranges (>= 1.23.16), r-bioc-rtracklayer (>= 1.25.5), r-bioc-xvector (>= 0.5.4), r-bioc-genomicalignments (>= 1.1.9), r-bioc-s4vectors (>= 0.13.13), r-bioc-iranges (>= 2.5.27), r-cran-readr, r-bioc-biocgenerics, r-cran-reshape2 (>= 1.4.1), r-cran-ggplot2 (>= 2.1.0), r-cran-powerlaw, r-bioc-annotate, r-bioc-go.db, r-cran-r.utils, r-bioc-keggrest Filtered Build-Depends: debhelper-compat (= 12), dh-r (>= 20180527), r-base-dev, r-bioc-biostrings (>= 2.33.4), r-cran-dbi (>= 0.7), r-cran-rsqlite, r-bioc-genomeinfodb (>= 1.1.3), r-bioc-genomicranges (>= 1.23.16), r-bioc-rtracklayer (>= 1.25.5), r-bioc-xvector (>= 0.5.4), r-bioc-genomicalignments (>= 1.1.9), r-bioc-s4vectors (>= 0.13.13), r-bioc-iranges (>= 2.5.27), r-cran-readr, r-bioc-biocgenerics, r-cran-reshape2 (>= 1.4.1), r-cran-ggplot2 (>= 2.1.0), r-cran-powerlaw, r-bioc-annotate, r-bioc-go.db, r-cran-r.utils, r-bioc-keggrest dpkg-deb: building package 'sbuild-build-depends-r-bioc-cner-dummy' in '/<>/resolver-MH67ld/apt_archive/sbuild-build-depends-r-bioc-cner-dummy.deb'. Ign:1 copy:/<>/resolver-MH67ld/apt_archive ./ InRelease Get:2 copy:/<>/resolver-MH67ld/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-MH67ld/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-MH67ld/apt_archive ./ Sources [423 B] Get:5 copy:/<>/resolver-MH67ld/apt_archive ./ Packages [745 B] Fetched 3287 B in 0s (161 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install r-bioc-cner build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libhogweed4 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-9 groff-base icu-devtools intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-9-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu-dev libicu63 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libncurses-dev libncurses5-dev libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix0 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db pkg-config po-debconf r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-go.db r-bioc-iranges r-bioc-keggrest r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-askpass r-cran-assertthat r-cran-backports r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-cli r-cran-clipr r-cran-colorspace r-cran-crayon r-cran-curl r-cran-dbi r-cran-digest r-cran-ellipsis r-cran-fansi r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-hms r-cran-httr r-cran-jsonlite r-cran-labeling r-cran-lambda.r r-cran-lattice r-cran-lazyeval r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-png r-cran-powerlaw r-cran-prettyunits r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-readr r-cran-reshape2 r-cran-rlang r-cran-rsqlite r-cran-scales r-cran-snow r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-vgam r-cran-viridislite r-cran-withr r-cran-xml r-cran-xtable r-cran-zeallot ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc gfortran-9-doc libgfortran5-dbg libcoarrays-dev groff liblapack-doc krb5-doc krb5-user icu-doc liblzma-doc ncurses-doc readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk m4-doc apparmor less www-browser libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo r-bioc-genefilter r-cran-runit r-bioc-graph r-cran-knitr r-bioc-affy r-bioc-deseq2 r-cran-foreach r-cran-bbmisc r-bioc-variantannotation r-bioc-shortread r-cran-codetools r-cran-data.table r-bioc-bsgenome r-bioc-genomicfeatures r-bioc-gviz r-bioc-annotationhub r-bioc-limma r-cran-rmarkdown r-bioc-rhdf5 r-cran-testthat r-cran-webshot r-cran-rstudioapi r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shiny r-cran-shinyjs r-cran-dplyr r-cran-jpeg r-cran-viridis r-cran-rmysql r-cran-hmisc r-cran-maps r-cran-maptools r-cran-multcomp r-cran-quantreg r-cran-rpart r-cran-sf r-cran-svglite r-cran-forcats r-cran-lubridate r-cran-httpuv r-cran-xml2 r-cran-getopt r-cran-base64enc libgdal-dev r-cran-doparallel r-cran-iterators r-cran-inline r-cran-covr r-cran-dichromat r-cran-rmpi r-cran-rsprng r-cran-rlecuyer r-cran-htmltools r-cran-generics r-cran-plm r-cran-zoo r-cran-survival r-cran-purrr Recommended packages: devscripts curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libpng-tools publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl r-recommended r-doc-html r-cran-runit r-cran-batchjobs r-cran-doparallel r-cran-batchtools r-cran-rmpi r-bioc-genefilter r-bioc-shortread r-cran-testthat r-cran-mockery r-cran-httpuv r-cran-webutils r-cran-testit r-cran-codetools r-cran-survival r-cran-sp r-cran-mapproj r-cran-hexbin r-cran-lubridate r-cran-domc r-cran-abind r-cran-rmarkdown r-cran-dbitest r-cran-htmltools r-cran-htmlwidgets r-cran-data.table r-cran-knitr r-cran-dplyr r-cran-mockr libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-9 groff-base icu-devtools intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-9-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu-dev libicu63 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libncurses-dev libncurses5-dev libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix0 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db pkg-config po-debconf r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-go.db r-bioc-iranges r-bioc-keggrest r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-askpass r-cran-assertthat r-cran-backports r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-cli r-cran-clipr r-cran-colorspace r-cran-crayon r-cran-curl r-cran-dbi r-cran-digest r-cran-ellipsis r-cran-fansi r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-hms r-cran-httr r-cran-jsonlite r-cran-labeling r-cran-lambda.r r-cran-lattice r-cran-lazyeval r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-png r-cran-powerlaw r-cran-prettyunits r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-readr r-cran-reshape2 r-cran-rlang r-cran-rsqlite r-cran-scales r-cran-snow r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-vgam r-cran-viridislite r-cran-withr r-cran-xml r-cran-xtable r-cran-zeallot sbuild-build-depends-r-bioc-cner-dummy ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 233 newly installed, 0 to remove and 0 not upgraded. Need to get 197 MB of archives. After this operation, 507 MB of additional disk space will be used. Get:1 copy:/<>/resolver-MH67ld/apt_archive ./ sbuild-build-depends-r-bioc-cner-dummy 0.invalid.0 [1072 B] Get:2 http://ftpmaster.internal/ubuntu focal/main arm64 libbsd0 arm64 0.10.0-1 [43.7 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main arm64 bsdmainutils arm64 11.1.2ubuntu2 [175 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main arm64 libuchardet0 arm64 0.0.6-3 [65.0 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main arm64 groff-base arm64 1.22.4-3 [813 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main arm64 libpipeline1 arm64 1.5.1-2 [24.4 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main arm64 man-db arm64 2.9.0-1 [1097 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main arm64 libmagic-mgc arm64 1:5.37-6 [209 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main arm64 libmagic1 arm64 1:5.37-6 [70.9 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main arm64 file arm64 1:5.37-6 [23.2 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main arm64 libelf1 arm64 0.176-1.1 [43.6 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main arm64 libexpat1 arm64 2.2.9-1 [61.3 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main arm64 libfribidi0 arm64 1.0.7-1.1 [23.5 kB] Get:14 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 libglib2.0-0 arm64 2.63.1-1 [1183 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main arm64 libicu63 arm64 63.2-2 [8146 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main arm64 libxml2 arm64 2.9.4+dfsg1-7ubuntu5 [578 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main arm64 ucf all 3.0038+nmu1 [51.6 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main arm64 gettext-base arm64 0.19.8.1-9 [48.0 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main arm64 libkrb5support0 arm64 1.17-6 [30.8 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main arm64 libk5crypto3 arm64 1.17-6 [80.5 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main arm64 libkeyutils1 arm64 1.6-6ubuntu1 [10.1 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main arm64 libkrb5-3 arm64 1.17-6 [312 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main arm64 libgssapi-krb5-2 arm64 1.17-6 [113 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main arm64 libpsl5 arm64 0.20.2-2 [49.9 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main arm64 libxau6 arm64 1:1.0.9-0ubuntu1 [7356 B] Get:26 http://ftpmaster.internal/ubuntu focal/main arm64 libxdmcp6 arm64 1:1.1.3-0ubuntu1 [10.3 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main arm64 libxcb1 arm64 1.13.1-2 [43.6 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main arm64 libx11-data all 2:1.6.8-1 [113 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main arm64 libx11-6 arm64 2:1.6.8-1 [553 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main arm64 libxext6 arm64 2:1.3.4-0ubuntu1 [27.7 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main arm64 libxmuu1 arm64 2:1.1.3-0ubuntu1 [9772 B] Get:32 http://ftpmaster.internal/ubuntu focal/main arm64 xauth arm64 1:1.1-0ubuntu1 [24.1 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main arm64 libsigsegv2 arm64 2.12-2 [13.3 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main arm64 m4 arm64 1.4.18-4 [194 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main arm64 autoconf all 2.69-11ubuntu1 [321 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main arm64 autotools-dev all 20180224.1 [39.6 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main arm64 automake all 1:1.16.1-4ubuntu3 [522 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main arm64 autopoint all 0.19.8.1-9 [412 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main arm64 dctrl-tools arm64 2.24-3 [59.1 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main arm64 libtool all 2.4.6-11 [194 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main arm64 dh-autoreconf all 19 [16.1 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main arm64 libdebhelper-perl all 12.7.1ubuntu1 [52.0 kB] Get:43 http://ftpmaster.internal/ubuntu 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3.0-11build1 [146 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main arm64 unzip arm64 6.0-25ubuntu1 [163 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main arm64 libpaper1 arm64 1.1.28 [12.7 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main arm64 libpaper-utils arm64 1.1.28 [8328 B] Get:57 http://ftpmaster.internal/ubuntu focal/main arm64 xdg-utils all 1.1.3-1ubuntu2 [60.5 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main arm64 libblas3 arm64 3.8.0-8ubuntu1 [88.8 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main arm64 libfreetype6 arm64 2.10.1-2 [316 kB] Get:60 http://ftpmaster.internal/ubuntu focal/main arm64 fonts-dejavu-core all 2.37-1 [1041 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main arm64 fontconfig-config all 2.13.1-2ubuntu2 [28.9 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main arm64 libfontconfig1 arm64 2.13.1-2ubuntu2 [111 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main arm64 libpixman-1-0 arm64 0.38.4-0ubuntu1 [130 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main arm64 libxcb-render0 arm64 1.13.1-2 [14.5 kB] Get:65 http://ftpmaster.internal/ubuntu focal/main arm64 libxcb-shm0 arm64 1.13.1-2 [5628 B] Get:66 http://ftpmaster.internal/ubuntu focal/main arm64 libxrender1 arm64 1:0.9.10-1 [16.1 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main arm64 libcairo2 arm64 1.16.0-4 [539 kB] Get:68 http://ftpmaster.internal/ubuntu focal/main arm64 libbrotli1 arm64 1.0.7-5 [259 kB] Get:69 http://ftpmaster.internal/ubuntu focal/main arm64 libroken18-heimdal arm64 7.5.0+dfsg-3build1 [39.4 kB] Get:70 http://ftpmaster.internal/ubuntu focal/main arm64 libasn1-8-heimdal arm64 7.5.0+dfsg-3build1 [150 kB] Get:71 http://ftpmaster.internal/ubuntu focal/main arm64 libheimbase1-heimdal arm64 7.5.0+dfsg-3build1 [27.9 kB] Get:72 http://ftpmaster.internal/ubuntu focal/main arm64 libhcrypto4-heimdal arm64 7.5.0+dfsg-3build1 [85.9 kB] Get:73 http://ftpmaster.internal/ubuntu focal/main arm64 libwind0-heimdal arm64 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Get:83 http://ftpmaster.internal/ubuntu focal/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2build1 [53.3 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main arm64 libssh-4 arm64 0.9.0-1ubuntu1 [185 kB] Get:85 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 libcurl4 arm64 7.66.0-1ubuntu1 [213 kB] Get:86 http://ftpmaster.internal/ubuntu focal/main arm64 libjpeg-turbo8 arm64 2.0.3-0ubuntu1 [101 kB] Get:87 http://ftpmaster.internal/ubuntu focal/main arm64 libjpeg8 arm64 8c-2ubuntu8 [2198 B] Get:88 http://ftpmaster.internal/ubuntu focal/main arm64 libgfortran5 arm64 9.2.1-19ubuntu1 [333 kB] Get:89 http://ftpmaster.internal/ubuntu focal/main arm64 liblapack3 arm64 3.8.0-8ubuntu1 [1503 kB] Get:90 http://ftpmaster.internal/ubuntu focal/main arm64 fontconfig arm64 2.13.1-2ubuntu2 [171 kB] Get:91 http://ftpmaster.internal/ubuntu focal/main arm64 libgraphite2-3 arm64 1.3.13-11 [67.8 kB] Get:92 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 libharfbuzz0b arm64 2.6.4-1 [353 kB] Get:93 http://ftpmaster.internal/ubuntu focal/main arm64 libthai-data all 0.1.28-3 [134 kB] Get:94 http://ftpmaster.internal/ubuntu focal/main arm64 libdatrie1 arm64 0.2.12-3 [17.9 kB] Get:95 http://ftpmaster.internal/ubuntu focal/main arm64 libthai0 arm64 0.1.28-3 [16.8 kB] Get:96 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 libpango-1.0-0 arm64 1.44.7-1 [153 kB] Get:97 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 libpangoft2-1.0-0 arm64 1.44.7-1 [32.1 kB] Get:98 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 libpangocairo-1.0-0 arm64 1.44.7-1 [22.4 kB] Get:99 http://ftpmaster.internal/ubuntu focal/main arm64 libtcl8.6 arm64 8.6.9+dfsg-2 [846 kB] Get:100 http://ftpmaster.internal/ubuntu focal/main arm64 libjbig0 arm64 2.1-3.1build1 [24.0 kB] Get:101 http://ftpmaster.internal/ubuntu focal/main arm64 libwebp6 arm64 0.6.1-2 [155 kB] Get:102 http://ftpmaster.internal/ubuntu focal-proposed/main arm64 libtiff5 arm64 4.1.0-1 [150 kB] Get:103 http://ftpmaster.internal/ubuntu focal/main arm64 libxft2 arm64 2.3.3-0ubuntu1 [35.9 kB] Get:104 http://ftpmaster.internal/ubuntu focal/main arm64 x11-common all 1:7.7+19ubuntu12 [22.4 kB] Get:105 http://ftpmaster.internal/ubuntu focal/main arm64 libxss1 arm64 1:1.2.3-1 [8080 B] Get:106 http://ftpmaster.internal/ubuntu focal/main arm64 libtk8.6 arm64 8.6.9-2 [670 kB] Get:107 http://ftpmaster.internal/ubuntu focal/main arm64 libice6 arm64 2:1.0.10-0ubuntu1 [37.7 kB] Get:108 http://ftpmaster.internal/ubuntu focal/main arm64 libsm6 arm64 2:1.2.3-1 [15.1 kB] Get:109 http://ftpmaster.internal/ubuntu focal/main arm64 libxt6 arm64 1:1.1.5-1 [128 kB] Get:110 http://ftpmaster.internal/ubuntu focal/universe arm64 r-base-core arm64 3.6.1-7 [24.2 MB] Get:111 http://ftpmaster.internal/ubuntu focal/main arm64 libgfortran-9-dev arm64 9.2.1-19ubuntu1 [390 kB] Get:112 http://ftpmaster.internal/ubuntu focal/main arm64 gfortran-9 arm64 9.2.1-19ubuntu1 [8981 kB] Get:113 http://ftpmaster.internal/ubuntu focal/main arm64 gfortran arm64 4:9.2.1-3.1ubuntu1 [1364 B] Get:114 http://ftpmaster.internal/ubuntu focal/main arm64 libblas-dev arm64 3.8.0-8ubuntu1 [92.7 kB] Get:115 http://ftpmaster.internal/ubuntu focal/main arm64 liblapack-dev arm64 3.8.0-8ubuntu1 [2721 kB] Get:116 http://ftpmaster.internal/ubuntu focal/main arm64 libncurses-dev arm64 6.1+20191019-1ubuntu1 [327 kB] Get:117 http://ftpmaster.internal/ubuntu focal/main arm64 libncurses5-dev arm64 6.1+20191019-1ubuntu1 [992 B] Get:118 http://ftpmaster.internal/ubuntu focal/main arm64 libreadline-dev arm64 8.0-3 [146 kB] Get:119 http://ftpmaster.internal/ubuntu focal/main arm64 libjpeg-turbo8-dev arm64 2.0.3-0ubuntu1 [215 kB] Get:120 http://ftpmaster.internal/ubuntu focal/main arm64 libjpeg8-dev arm64 8c-2ubuntu8 [1550 B] Get:121 http://ftpmaster.internal/ubuntu focal/main arm64 libjpeg-dev arm64 8c-2ubuntu8 [1546 B] Get:122 http://ftpmaster.internal/ubuntu focal/main arm64 libpcre2-16-0 arm64 10.32-5 [144 kB] Get:123 http://ftpmaster.internal/ubuntu focal/main arm64 libpcre2-32-0 arm64 10.32-5 [137 kB] Get:124 http://ftpmaster.internal/ubuntu focal/main arm64 libpcre2-posix0 arm64 10.32-5 [5632 B] Get:125 http://ftpmaster.internal/ubuntu focal/main arm64 libpcre2-dev arm64 10.32-5 [554 kB] Get:126 http://ftpmaster.internal/ubuntu focal/main arm64 libpcre16-3 arm64 2:8.39-12 [126 kB] Get:127 http://ftpmaster.internal/ubuntu focal/main arm64 libpcre32-3 arm64 2:8.39-12 [119 kB] Get:128 http://ftpmaster.internal/ubuntu focal/main arm64 libpcrecpp0v5 arm64 2:8.39-12 [14.8 kB] Get:129 http://ftpmaster.internal/ubuntu focal/main arm64 libpcre3-dev arm64 2:8.39-12 [468 kB] Get:130 http://ftpmaster.internal/ubuntu focal/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-1ubuntu3 [170 kB] Get:131 http://ftpmaster.internal/ubuntu focal/main arm64 libpng-dev arm64 1.6.37-1 [172 kB] Get:132 http://ftpmaster.internal/ubuntu focal/main arm64 libbz2-dev arm64 1.0.8-2 [31.6 kB] Get:133 http://ftpmaster.internal/ubuntu focal/main arm64 liblzma-dev arm64 5.2.4-1 [144 kB] Get:134 http://ftpmaster.internal/ubuntu focal/main arm64 icu-devtools arm64 63.2-2 [170 kB] Get:135 http://ftpmaster.internal/ubuntu focal/main arm64 libicu-dev arm64 63.2-2 [9055 kB] Get:136 http://ftpmaster.internal/ubuntu focal/main arm64 pkg-config arm64 0.29.1-0ubuntu3 [43.7 kB] Get:137 http://ftpmaster.internal/ubuntu focal/universe arm64 r-base-dev all 3.6.1-7 [4528 B] Get:138 http://ftpmaster.internal/ubuntu focal/main arm64 libfile-which-perl all 1.23-1 [13.8 kB] Get:139 http://ftpmaster.internal/ubuntu focal/universe arm64 libswitch-perl all 2.17-2 [18.8 kB] Get:140 http://ftpmaster.internal/ubuntu focal/universe arm64 dh-r all 20190917 [32.7 kB] Get:141 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-littler arm64 0.3.9-1 [298 kB] Get:142 http://ftpmaster.internal/ubuntu focal/universe arm64 littler all 0.3.9-1 [2420 B] Get:143 http://ftpmaster.internal/ubuntu focal-proposed/universe arm64 r-bioc-biocgenerics all 0.32.0-1 [639 kB] Get:144 http://ftpmaster.internal/ubuntu focal-proposed/universe arm64 r-bioc-biobase arm64 2.46.0-1 [2222 kB] Get:145 http://ftpmaster.internal/ubuntu focal-proposed/universe arm64 r-bioc-s4vectors arm64 0.24.0-1 [1933 kB] Get:146 http://ftpmaster.internal/ubuntu focal-proposed/universe arm64 r-bioc-iranges arm64 2.20.0-1 [2202 kB] Get:147 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-dbi all 1.0.0-2 [789 kB] Get:148 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-bit arm64 1.1-14-1build1 [219 kB] Get:149 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-bit64 arm64 0.9-7-3 [435 kB] Get:150 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-magrittr all 1.5-5 [152 kB] Get:151 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-assertthat all 0.2.1-1 [56.7 kB] Get:152 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-prettyunits all 1.0.2-3 [32.7 kB] Get:153 http://ftpmaster.internal/ubuntu focal-proposed/universe arm64 r-cran-rlang arm64 0.4.1-1 [1093 kB] Get:154 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-backports arm64 1.1.5-1 [57.8 kB] Get:155 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-ellipsis arm64 0.3.0-1 [30.5 kB] Get:156 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-digest arm64 0.6.22-1 [161 kB] Get:157 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-glue arm64 1.3.1-1 [152 kB] Get:158 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-zeallot all 0.1.0-2 [60.0 kB] Get:159 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-vctrs arm64 0.2.0-1 [691 kB] Get:160 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-blob all 1.2.0-1 [46.1 kB] Get:161 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-memoise all 1.1.0-2 [38.8 kB] Get:162 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-pkgconfig all 2.0.3-1 [19.7 kB] Get:163 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-pkgkitten all 0.1.5-1 [22.6 kB] Get:164 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-rcpp arm64 1.0.3-1 [1851 kB] Get:165 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-rsqlite arm64 2.1.2-1 [841 kB] Get:166 http://ftpmaster.internal/ubuntu focal-proposed/universe arm64 r-bioc-annotationdbi all 1.48.0-1 [4623 kB] Get:167 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-xml arm64 3.98-1.20-2 [1936 kB] Get:168 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-xtable all 1:1.8-4-1 [690 kB] Get:169 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-bitops arm64 1.0-6-4 [22.9 kB] Get:170 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-rcurl arm64 1.95-4.12-1 [719 kB] Get:171 http://ftpmaster.internal/ubuntu focal-proposed/universe arm64 r-bioc-annotate all 1.64.0+dfsg-1 [2113 kB] Get:172 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-formatr all 1.7-1 [147 kB] Get:173 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-lambda.r all 1.2.4-1 [119 kB] Get:174 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-futile.options all 1.0.1-2 [19.8 kB] Get:175 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-futile.logger all 1.4.3-3 [102 kB] Get:176 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-snow all 1:0.4.3-1 [107 kB] Get:177 http://ftpmaster.internal/ubuntu focal-proposed/universe arm64 r-bioc-biocparallel arm64 1.20.0-1 [1068 kB] Get:178 http://ftpmaster.internal/ubuntu focal-proposed/universe arm64 r-bioc-zlibbioc all 1.32.0+dfsg-1 [8820 B] Get:179 http://ftpmaster.internal/ubuntu focal-proposed/universe arm64 r-bioc-xvector arm64 0.26.0-1 [609 kB] Get:180 http://ftpmaster.internal/ubuntu focal-proposed/universe arm64 r-bioc-biostrings arm64 2.54.0-1 [14.1 MB] Get:181 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-matrixstats arm64 0.55.0-1 [578 kB] Get:182 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-lattice arm64 0.20-38-1 [1110 kB] Get:183 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-matrix arm64 1.2-17-2 [3395 kB] Get:184 http://ftpmaster.internal/ubuntu focal-proposed/universe arm64 r-bioc-delayedarray arm64 0.12.0+dfsg-1 [1657 kB] Get:185 http://ftpmaster.internal/ubuntu focal/universe arm64 r-bioc-genomeinfodbdata all 1.2.2-1 [10.2 MB] Get:186 http://ftpmaster.internal/ubuntu focal-proposed/universe arm64 r-bioc-genomeinfodb all 1.22.0-1 [3686 kB] Get:187 http://ftpmaster.internal/ubuntu focal-proposed/universe arm64 r-bioc-genomicranges arm64 1.38.0+dfsg-1 [1833 kB] Get:188 http://ftpmaster.internal/ubuntu focal-proposed/universe arm64 r-bioc-summarizedexperiment all 1.16.0+dfsg-1 [1892 kB] Get:189 http://ftpmaster.internal/ubuntu focal-proposed/universe arm64 r-bioc-rsamtools arm64 2.2.1-1 [3688 kB] Get:190 http://ftpmaster.internal/ubuntu focal-proposed/universe arm64 r-bioc-genomicalignments arm64 1.22.0-1 [2122 kB] Get:191 http://ftpmaster.internal/ubuntu focal-proposed/universe arm64 r-bioc-go.db all 3.10.0-1 [16.1 MB] Get:192 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-curl arm64 4.2+dfsg-1 [147 kB] Get:193 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-jsonlite arm64 1.6+dfsg-1 [435 kB] Get:194 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-mime arm64 0.7-1 [35.4 kB] Get:195 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-sys arm64 3.3-1 [42.8 kB] Get:196 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-askpass arm64 1.1-1 [21.9 kB] Get:197 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-openssl arm64 1.2.2+dfsg-1ubuntu1 [346 kB] Get:198 http://ftpmaster.internal/ubuntu focal-proposed/universe arm64 r-cran-r6 all 2.4.1-1 [79.4 kB] Get:199 http://ftpmaster.internal/ubuntu focal-proposed/universe arm64 r-cran-httr all 1.4.1-1 [480 kB] Get:200 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-png arm64 0.1-7-3 [38.4 kB] Get:201 http://ftpmaster.internal/ubuntu focal-proposed/universe arm64 r-bioc-keggrest all 1.26.1+dfsg-1 [98.2 kB] Get:202 http://ftpmaster.internal/ubuntu focal-proposed/universe arm64 r-bioc-rtracklayer arm64 1.46.0-1 [2600 kB] Get:203 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-crayon all 1.3.4-4ubuntu1 [499 kB] Get:204 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-cli all 1.1.0-1 [175 kB] Get:205 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-clipr all 0.7.0-1 [50.4 kB] Get:206 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-colorspace arm64 1.4-1+dfsg-1 [1436 kB] Get:207 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-fansi arm64 0.4.0-1 [334 kB] Get:208 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-gtable all 0.3.0+dfsg-1 [138 kB] Get:209 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-lazyeval arm64 0.2.2-1 [143 kB] Get:210 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-mass arm64 7.3-51.4-2 [1111 kB] Get:211 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-nlme arm64 3.1.142-1 [2215 kB] Get:212 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-mgcv arm64 1.8-31-1 [2704 kB] Get:213 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-plyr arm64 1.8.4-2 [811 kB] Get:214 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-stringi arm64 1.4.3-1 [684 kB] Get:215 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-stringr all 1.4.0-1 [192 kB] Get:216 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-reshape2 arm64 1.4.3-2 [110 kB] Get:217 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-labeling all 0.3-3 [61.5 kB] Get:218 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-munsell all 0.5.0-1 [206 kB] Get:219 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-rcolorbrewer all 1.1-2-2 [54.4 kB] Get:220 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-viridislite all 0.3.0-3 [58.9 kB] Get:221 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-scales arm64 1.0.0-2 [456 kB] Get:222 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-utf8 arm64 1.1.4-1build1 [127 kB] Get:223 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-pillar all 1.4.2-1 [225 kB] Get:224 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-tibble arm64 2.1.3-1 [324 kB] Get:225 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-withr all 2.1.2-3 [153 kB] Get:226 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-ggplot2 all 3.2.1+dfsg-1 [2834 kB] Get:227 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-hms all 0.5.2-1 [104 kB] Get:228 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-vgam arm64 1.1-1-1 [7699 kB] Get:229 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-powerlaw all 0.70.2-1 [3341 kB] Get:230 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-r.methodss3 all 1.7.1-3 [77.8 kB] Get:231 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-r.oo all 1.23.0-1 [959 kB] Get:232 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-r.utils all 2.9.0-1 [1384 kB] Get:233 http://ftpmaster.internal/ubuntu focal/universe arm64 r-cran-readr arm64 1.3.1-1 [671 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 197 MB in 16s (12.3 MB/s) Selecting previously unselected package libbsd0:arm64. (Reading database ... 14668 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.10.0-1_arm64.deb ... Unpacking libbsd0:arm64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2ubuntu2_arm64.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../002-libuchardet0_0.0.6-3_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-3_arm64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../004-libpipeline1_1.5.1-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.9.0-1_arm64.deb ... Unpacking man-db (2.9.0-1) ... 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Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../049-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../050-debhelper_12.7.1ubuntu1_all.deb ... Unpacking debhelper (12.7.1ubuntu1) ... Selecting previously unselected package zip. Preparing to unpack .../051-zip_3.0-11build1_arm64.deb ... Unpacking zip (3.0-11build1) ... Selecting previously unselected package unzip. Preparing to unpack .../052-unzip_6.0-25ubuntu1_arm64.deb ... Unpacking unzip (6.0-25ubuntu1) ... Selecting previously unselected package libpaper1:arm64. Preparing to unpack .../053-libpaper1_1.1.28_arm64.deb ... Unpacking libpaper1:arm64 (1.1.28) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../054-libpaper-utils_1.1.28_arm64.deb ... Unpacking libpaper-utils (1.1.28) ... Selecting previously unselected package xdg-utils. 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Selecting previously unselected package libpixman-1-0:arm64. Preparing to unpack .../061-libpixman-1-0_0.38.4-0ubuntu1_arm64.deb ... Unpacking libpixman-1-0:arm64 (0.38.4-0ubuntu1) ... Selecting previously unselected package libxcb-render0:arm64. Preparing to unpack .../062-libxcb-render0_1.13.1-2_arm64.deb ... Unpacking libxcb-render0:arm64 (1.13.1-2) ... Selecting previously unselected package libxcb-shm0:arm64. Preparing to unpack .../063-libxcb-shm0_1.13.1-2_arm64.deb ... Unpacking libxcb-shm0:arm64 (1.13.1-2) ... Selecting previously unselected package libxrender1:arm64. Preparing to unpack .../064-libxrender1_1%3a0.9.10-1_arm64.deb ... Unpacking libxrender1:arm64 (1:0.9.10-1) ... Selecting previously unselected package libcairo2:arm64. Preparing to unpack .../065-libcairo2_1.16.0-4_arm64.deb ... Unpacking libcairo2:arm64 (1.16.0-4) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../066-libbrotli1_1.0.7-5_arm64.deb ... 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Setting up gfortran (4:9.2.1-3.1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:arm64 (1.16.0-4) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxt6:arm64 (1:1.1.5-1) ... Setting up xauth (1:1.1-0ubuntu1) ... Setting up libxss1:arm64 (1:1.2.3-1) ... Setting up libpangoft2-1.0-0:arm64 (1.44.7-1) ... Setting up libpangocairo-1.0-0:arm64 (1.44.7-1) ... Setting up libkrb5-26-heimdal:arm64 (7.5.0+dfsg-3build1) ... Setting up libxft2:arm64 (2.3.3-0ubuntu1) ... Setting up po-debconf (1.0.21) ... Setting up libtk8.6:arm64 (8.6.9-2) ... Setting up libheimntlm0-heimdal:arm64 (7.5.0+dfsg-3build1) ... Setting up libgssapi3-heimdal:arm64 (7.5.0+dfsg-3build1) ... Setting up libldap-2.4-2:arm64 (2.4.48+dfsg-1ubuntu3) ... Setting up libcurl4:arm64 (7.66.0-1ubuntu1) ... Setting up r-base-core (3.6.1-7) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.3.4-4ubuntu1) ... Setting up r-cran-gtable (0.3.0+dfsg-1) ... Setting up r-cran-labeling (0.3-3) ... Setting up r-cran-futile.options (1.0.1-2) ... Setting up r-cran-lattice (0.20-38-1) ... Setting up r-cran-nlme (3.1.142-1) ... Setting up r-cran-formatr (1.7-1) ... Setting up r-cran-xml (3.98-1.20-2) ... Setting up r-cran-viridislite (0.3.0-3) ... Setting up r-cran-lazyeval (0.2.2-1) ... Setting up r-cran-clipr (0.7.0-1) ... Setting up r-cran-r6 (2.4.1-1) ... Setting up r-cran-pkgkitten (0.1.5-1) ... Setting up r-cran-magrittr (1.5-5) ... Setting up r-bioc-genomeinfodbdata (1.2.2-1) ... Setting up r-cran-littler (0.3.9-1) ... Setting up r-cran-rcpp (1.0.3-1) ... Setting up r-cran-curl (4.2+dfsg-1) ... Setting up r-bioc-biocgenerics (0.32.0-1) ... Setting up r-cran-rlang (0.4.1-1) ... Setting up r-cran-matrixstats (0.55.0-1) ... Setting up r-base-dev (3.6.1-7) ... Setting up r-cran-assertthat (0.2.1-1) ... Setting up littler (0.3.9-1) ... Setting up r-cran-vgam (1.1-1-1) ... Setting up r-cran-sys (3.3-1) ... Setting up r-cran-withr (2.1.2-3) ... Setting up r-cran-backports (1.1.5-1) ... Setting up r-cran-mime (0.7-1) ... Setting up r-cran-digest (0.6.22-1) ... Setting up r-cran-lambda.r (1.2.4-1) ... Setting up r-cran-dbi (1.0.0-2) ... Setting up r-cran-prettyunits (1.0.2-3) ... Setting up r-cran-fansi (0.4.0-1) ... Setting up r-cran-mass (7.3-51.4-2) ... Setting up r-cran-snow (1:0.4.3-1) ... Setting up r-cran-glue (1.3.1-1) ... Setting up r-cran-bit (1.1-14-1build1) ... Setting up r-cran-zeallot (0.1.0-2) ... Setting up r-cran-xtable (1:1.8-4-1) ... Setting up r-cran-cli (1.1.0-1) ... Setting up r-cran-bitops (1.0-6-4) ... Setting up r-cran-bit64 (0.9-7-3) ... Setting up r-bioc-zlibbioc (1.32.0+dfsg-1) ... Setting up r-cran-askpass (1.1-1) ... Setting up r-cran-png (0.1-7-3) ... Setting up r-cran-r.methodss3 (1.7.1-3) ... Setting up r-bioc-biobase (2.46.0-1) ... Setting up r-cran-jsonlite (1.6+dfsg-1) ... Setting up r-cran-pkgconfig (2.0.3-1) ... Setting up r-cran-utf8 (1.1.4-1build1) ... Setting up r-cran-colorspace (1.4-1+dfsg-1) ... Setting up r-cran-stringi (1.4.3-1) ... Setting up r-cran-plyr (1.8.4-2) ... Setting up r-cran-rcolorbrewer (1.1-2-2) ... Setting up r-bioc-s4vectors (0.24.0-1) ... Setting up r-cran-futile.logger (1.4.3-3) ... Setting up r-cran-memoise (1.1.0-2) ... Setting up r-cran-matrix (1.2-17-2) ... Setting up r-cran-mgcv (1.8-31-1) ... Setting up r-cran-powerlaw (0.70.2-1) ... Setting up r-bioc-iranges (2.20.0-1) ... Setting up r-cran-rcurl (1.95-4.12-1) ... Setting up r-cran-ellipsis (0.3.0-1) ... Setting up r-cran-openssl (1.2.2+dfsg-1ubuntu1) ... Setting up r-cran-stringr (1.4.0-1) ... Setting up r-bioc-biocparallel (1.20.0-1) ... Setting up r-cran-munsell (0.5.0-1) ... Setting up r-cran-r.oo (1.23.0-1) ... Setting up r-cran-reshape2 (1.4.3-2) ... Setting up r-bioc-genomeinfodb (1.22.0-1) ... Setting up r-cran-httr (1.4.1-1) ... Setting up r-cran-scales (1.0.0-2) ... Setting up r-bioc-xvector (0.26.0-1) ... Setting up r-cran-vctrs (0.2.0-1) ... Setting up r-bioc-delayedarray (0.12.0+dfsg-1) ... Setting up r-cran-pillar (1.4.2-1) ... Setting up r-cran-r.utils (2.9.0-1) ... Setting up r-bioc-genomicranges (1.38.0+dfsg-1) ... Setting up r-bioc-biostrings (2.54.0-1) ... Setting up r-cran-tibble (2.1.3-1) ... Setting up r-cran-hms (0.5.2-1) ... Setting up r-cran-blob (1.2.0-1) ... Setting up r-bioc-rsamtools (2.2.1-1) ... Setting up r-cran-rsqlite (2.1.2-1) ... Setting up r-bioc-summarizedexperiment (1.16.0+dfsg-1) ... Setting up r-bioc-keggrest (1.26.1+dfsg-1) ... Setting up r-cran-ggplot2 (3.2.1+dfsg-1) ... Setting up r-bioc-annotationdbi (1.48.0-1) ... Setting up r-bioc-go.db (3.10.0-1) ... Setting up r-bioc-annotate (1.64.0+dfsg-1) ... Setting up r-cran-readr (1.3.1-1) ... Setting up r-bioc-genomicalignments (1.22.0-1) ... Setting up r-bioc-rtracklayer (1.46.0-1) ... Setting up debhelper (12.7.1ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up dh-r (20190917) ... Setting up sbuild-build-depends-r-bioc-cner-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.30-0ubuntu2) ... Processing triggers for systemd (243-3ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-168-generic arm64 (aarch64) Toolchain package versions: binutils_2.33.1-1ubuntu1 dpkg-dev_1.19.7ubuntu2 g++-9_9.2.1-19ubuntu1 gcc-9_9.2.1-19ubuntu1 libc6-dev_2.30-0ubuntu2 libstdc++-9-dev_9.2.1-19ubuntu1 libstdc++6_9.2.1-19ubuntu1 linux-libc-dev_5.3.0-21.22 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1 apt_1.9.4 autoconf_2.69-11ubuntu1 automake_1:1.16.1-4ubuntu3 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11ubuntu1 base-passwd_3.5.46 bash_5.0-5ubuntu1 binutils_2.33.1-1ubuntu1 binutils-aarch64-linux-gnu_2.33.1-1ubuntu1 binutils-common_2.33.1-1ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.34-0.1ubuntu2 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110 coreutils_8.30-3ubuntu2 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r-bioc-s4vectors_0.24.0-1 r-bioc-summarizedexperiment_1.16.0+dfsg-1 r-bioc-xvector_0.26.0-1 r-bioc-zlibbioc_1.32.0+dfsg-1 r-cran-askpass_1.1-1 r-cran-assertthat_0.2.1-1 r-cran-backports_1.1.5-1 r-cran-bit_1.1-14-1build1 r-cran-bit64_0.9-7-3 r-cran-bitops_1.0-6-4 r-cran-blob_1.2.0-1 r-cran-cli_1.1.0-1 r-cran-clipr_0.7.0-1 r-cran-colorspace_1.4-1+dfsg-1 r-cran-crayon_1.3.4-4ubuntu1 r-cran-curl_4.2+dfsg-1 r-cran-dbi_1.0.0-2 r-cran-digest_0.6.22-1 r-cran-ellipsis_0.3.0-1 r-cran-fansi_0.4.0-1 r-cran-formatr_1.7-1 r-cran-futile.logger_1.4.3-3 r-cran-futile.options_1.0.1-2 r-cran-ggplot2_3.2.1+dfsg-1 r-cran-glue_1.3.1-1 r-cran-gtable_0.3.0+dfsg-1 r-cran-hms_0.5.2-1 r-cran-httr_1.4.1-1 r-cran-jsonlite_1.6+dfsg-1 r-cran-labeling_0.3-3 r-cran-lambda.r_1.2.4-1 r-cran-lattice_0.20-38-1 r-cran-lazyeval_0.2.2-1 r-cran-littler_0.3.9-1 r-cran-magrittr_1.5-5 r-cran-mass_7.3-51.4-2 r-cran-matrix_1.2-17-2 r-cran-matrixstats_0.55.0-1 r-cran-memoise_1.1.0-2 r-cran-mgcv_1.8-31-1 r-cran-mime_0.7-1 r-cran-munsell_0.5.0-1 r-cran-nlme_3.1.142-1 r-cran-openssl_1.2.2+dfsg-1ubuntu1 r-cran-pillar_1.4.2-1 r-cran-pkgconfig_2.0.3-1 r-cran-pkgkitten_0.1.5-1 r-cran-plyr_1.8.4-2 r-cran-png_0.1-7-3 r-cran-powerlaw_0.70.2-1 r-cran-prettyunits_1.0.2-3 r-cran-r.methodss3_1.7.1-3 r-cran-r.oo_1.23.0-1 r-cran-r.utils_2.9.0-1 r-cran-r6_2.4.1-1 r-cran-rcolorbrewer_1.1-2-2 r-cran-rcpp_1.0.3-1 r-cran-rcurl_1.95-4.12-1 r-cran-readr_1.3.1-1 r-cran-reshape2_1.4.3-2 r-cran-rlang_0.4.1-1 r-cran-rsqlite_2.1.2-1 r-cran-scales_1.0.0-2 r-cran-snow_1:0.4.3-1 r-cran-stringi_1.4.3-1 r-cran-stringr_1.4.0-1 r-cran-sys_3.3-1 r-cran-tibble_2.1.3-1 r-cran-utf8_1.1.4-1build1 r-cran-vctrs_0.2.0-1 r-cran-vgam_1.1-1-1 r-cran-viridislite_0.3.0-3 r-cran-withr_2.1.2-3 r-cran-xml_3.98-1.20-2 r-cran-xtable_1:1.8-4-1 r-cran-zeallot_0.1.0-2 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-cner-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 systemd_243-3ubuntu1 systemd-sysv_243-3ubuntu1 sysvinit-utils_2.96-1ubuntu1 tar_1.30+dfsg-6 tzdata_2019c-3 ubuntu-keyring_2018.09.18.1 ucf_3.0038+nmu1 unzip_6.0-25ubuntu1 util-linux_2.34-0.1ubuntu2 x11-common_1:7.7+19ubuntu12 xauth_1:1.1-0ubuntu1 xdg-utils_1.1.3-1ubuntu2 xz-utils_5.2.4-1 zip_3.0-11build1 zlib1g_1:1.2.11.dfsg-1ubuntu3 zlib1g-dev_1:1.2.11.dfsg-1ubuntu3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue Nov 12 06:37:25 2019 UTC gpgv: using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54 gpgv: issuer "daissi@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-bioc-cner_1.22.0+dfsg-1.dsc dpkg-source: info: extracting r-bioc-cner in r-bioc-cner-1.22.0+dfsg dpkg-source: info: unpacking r-bioc-cner_1.22.0+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-cner_1.22.0+dfsg-1.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-18093302 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-18093302 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-18093302 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package r-bioc-cner dpkg-buildpackage: info: source version 1.22.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules build-arch dh build-arch --buildsystem R dh_update_autotools_config -a -O--buildsystem=R dh_autoreconf -a -O--buildsystem=R dh_auto_configure -a -O--buildsystem=R dh_auto_build -a -O--buildsystem=R dh_auto_test -a -O--buildsystem=R create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --buildsystem R dh_testroot -a -O--buildsystem=R dh_prep -a -O--buildsystem=R dh_auto_install -a -O--buildsystem=R I: R Package: CNEr Version: 1.22.0 I: Building using R version 3.6.1-7 I: R API version: r-api-3.5 I: Using built-time from d/changelog: Tue, 12 Nov 2019 07:26:24 +0100 mkdir -p /<>/r-bioc-cner-1.22.0\+dfsg/debian/r-bioc-cner/usr/lib/R/site-library R CMD INSTALL -l /<>/r-bioc-cner-1.22.0\+dfsg/debian/r-bioc-cner/usr/lib/R/site-library --clean . "--built-timestamp='Tue, 12 Nov 2019 07:26:24 +0100'" * installing *source* package ‘CNEr’ ... ** using staged installation ** libs make[1]: Entering directory '/<>/r-bioc-cner-1.22.0+dfsg/src' gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-tNiDkM/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c S4Vectors_stubs.c -o S4Vectors_stubs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-tNiDkM/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c IRanges_stubs.c -o IRanges_stubs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-tNiDkM/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XVector_stubs.c -o XVector_stubs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-tNiDkM/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_CNEr.c -o R_init_CNEr.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-tNiDkM/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-tNiDkM/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c io.c -o io.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-tNiDkM/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ceScan.c -o ceScan.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-tNiDkM/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/axt.c -o ucsc/axt.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-tNiDkM/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/base64.c -o ucsc/base64.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-tNiDkM/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/binRange.c -o ucsc/binRange.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-tNiDkM/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/bits.c -o ucsc/bits.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-tNiDkM/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/chain.c -o ucsc/chain.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-tNiDkM/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/_cheapcgi.c -o ucsc/_cheapcgi.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-tNiDkM/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/cirTree.c -o ucsc/cirTree.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-tNiDkM/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/common.c -o ucsc/common.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-tNiDkM/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/dlist.c -o ucsc/dlist.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-tNiDkM/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/dnaseq.c -o ucsc/dnaseq.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-tNiDkM/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/dnautil.c -o ucsc/dnautil.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-tNiDkM/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/dystring.c -o ucsc/dystring.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-tNiDkM/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/errabort.c -o ucsc/errabort.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-tNiDkM/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/hash.c -o ucsc/hash.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-tNiDkM/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/https.c -o ucsc/https.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-tNiDkM/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/intExp.c -o ucsc/intExp.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-tNiDkM/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/kxTok.c -o ucsc/kxTok.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-tNiDkM/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/linefile.c -o ucsc/linefile.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-tNiDkM/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/localmem.c -o ucsc/localmem.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-tNiDkM/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/memalloc.c -o ucsc/memalloc.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-tNiDkM/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/obscure.c -o ucsc/obscure.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-tNiDkM/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/options.c -o ucsc/options.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-tNiDkM/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/pipeline.c -o ucsc/pipeline.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-tNiDkM/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/_portimpl.c -o ucsc/_portimpl.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-tNiDkM/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/sqlList.c -o ucsc/sqlList.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-tNiDkM/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/sqlNum.c -o ucsc/sqlNum.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-tNiDkM/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/verbose.c -o ucsc/verbose.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-tNiDkM/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/os.c -o ucsc/os.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-tNiDkM/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/wildcmp.c -o ucsc/wildcmp.o gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o CNEr.so S4Vectors_stubs.o IRanges_stubs.o XVector_stubs.o R_init_CNEr.o utils.o io.o ceScan.o ucsc/axt.o ucsc/base64.o ucsc/binRange.o ucsc/bits.o ucsc/chain.o ucsc/_cheapcgi.o ucsc/cirTree.o ucsc/common.o ucsc/dlist.o ucsc/dnaseq.o ucsc/dnautil.o ucsc/dystring.o ucsc/errabort.o ucsc/hash.o ucsc/https.o ucsc/intExp.o ucsc/kxTok.o ucsc/linefile.o ucsc/localmem.o ucsc/memalloc.o ucsc/obscure.o ucsc/options.o ucsc/pipeline.o ucsc/_portimpl.o ucsc/sqlList.o ucsc/sqlNum.o ucsc/verbose.o ucsc/os.o ucsc/wildcmp.o -lz -L/usr/lib/R/lib -lR make[1]: Leaving directory '/<>/r-bioc-cner-1.22.0+dfsg/src' make[1]: Entering directory '/<>/r-bioc-cner-1.22.0+dfsg/src' make[1]: Leaving directory '/<>/r-bioc-cner-1.22.0+dfsg/src' installing to /<>/r-bioc-cner-1.22.0+dfsg/debian/r-bioc-cner/usr/lib/R/site-library/00LOCK-r-bioc-cner-1.22.0+dfsg/00new/CNEr/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CNEr) rm -f /<>/r-bioc-cner-1.22.0\+dfsg/debian/r-bioc-cner/usr/lib/R/site-library/CNEr/LICENSE Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 292. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 293. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 296. W: Ignoring specified R dependency: R (>= 3.4) I: Using r-bioc-gviz for Suggests:Gviz (>= 1.7.4) W: Cannot find a debian package for Suggests:BiocStyle I: Using r-cran-knitr for Suggests:knitr I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-cran-testthat for Suggests:testthat W: Cannot find a debian package for Suggests:BSgenome.Drerio.UCSC.danRer10 W: Cannot find a debian package for Suggests:BSgenome.Hsapiens.UCSC.hg38 W: Cannot find a debian package for Suggests:TxDb.Drerio.UCSC.danRer10.refGene W: Cannot find a debian package for Suggests:BSgenome.Hsapiens.UCSC.hg19 W: Cannot find a debian package for Suggests:BSgenome.Ggallus.UCSC.galGal3 I: Using r-bioc-biostrings for Imports:Biostrings (>= 2.33.4) I: Using r-cran-dbi for Imports:DBI (>= 0.7) I: Using r-cran-rsqlite for Imports:RSQLite (>= 0.11.4) I: Using r-bioc-genomeinfodb for Imports:GenomeInfoDb (>= 1.1.3) I: Using r-bioc-genomicranges for Imports:GenomicRanges (>= 1.23.16) I: Using r-bioc-rtracklayer for Imports:rtracklayer (>= 1.25.5) I: Using r-bioc-xvector for Imports:XVector (>= 0.5.4) I: Using r-bioc-genomicalignments for Imports:GenomicAlignments (>= 1.1.9) I: Using r-bioc-s4vectors for Imports:S4Vectors (>= 0.13.13) I: Using r-bioc-iranges for Imports:IRanges (>= 2.5.27) I: Using r-cran-readr for Imports:readr (>= 0.2.2) I: Using r-bioc-biocgenerics for Imports:BiocGenerics I: Using r-cran-reshape2 for Imports:reshape2 (>= 1.4.1) I: Using r-cran-ggplot2 for Imports:ggplot2 (>= 2.1.0) I: Using r-cran-powerlaw for Imports:poweRlaw (>= 0.60.3) I: Using r-bioc-annotate for Imports:annotate (>= 1.50.0) I: Using r-bioc-go.db for Imports:GO.db (>= 3.3.0) I: Using r-cran-r.utils for Imports:R.utils (>= 2.3.0) I: Using r-bioc-keggrest for Imports:KEGGREST (>= 1.14.0) I: BioConductor API version: r-api-bioc-3.10 dh_installdocs -a -O--buildsystem=R dh_installchangelogs -a -O--buildsystem=R dh_installinit -a -O--buildsystem=R dh_installsystemduser -a -O--buildsystem=R dh_perl -a -O--buildsystem=R dh_link -a -O--buildsystem=R dh_strip_nondeterminism -a -O--buildsystem=R dh_compress -a -O--buildsystem=R debian/rules override_dh_fixperms make[1]: Entering directory '/<>/r-bioc-cner-1.22.0+dfsg' dh_fixperms find debian -name "*.Rmd" -executable -exec chmod -x \{\} \; make[1]: Leaving directory '/<>/r-bioc-cner-1.22.0+dfsg' dh_missing -a -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -a -O--buildsystem=R dh_gencontrol -a -O--buildsystem=R dh_md5sums -a -O--buildsystem=R dh_builddeb -a -O--buildsystem=R INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing r-bioc-cner (in debian/r-bioc-cner); do_strip: , oemstrip: pkgstriptranslations: processing r-bioc-cner-dbgsym (in debian/.debhelper/r-bioc-cner/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-bioc-cner/DEBIAN/control, package r-bioc-cner, directory debian/r-bioc-cner pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-bioc-cner ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-bioc-cner' in '../r-bioc-cner_1.22.0+dfsg-1_arm64.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/r-bioc-cner/dbgsym-root/DEBIAN/control, package r-bioc-cner-dbgsym, directory debian/.debhelper/r-bioc-cner/dbgsym-root dpkg-deb: building package 'r-bioc-cner-dbgsym' in 'debian/.debhelper/scratch-space/build-r-bioc-cner/r-bioc-cner-dbgsym_1.22.0+dfsg-1_arm64.deb'. Renaming r-bioc-cner-dbgsym_1.22.0+dfsg-1_arm64.deb to r-bioc-cner-dbgsym_1.22.0+dfsg-1_arm64.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../r-bioc-cner_1.22.0+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20191114-1742 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-bioc-cner_1.22.0+dfsg-1_arm64.changes: ---------------------------------------- Format: 1.8 Date: Tue, 12 Nov 2019 07:26:24 +0100 Source: r-bioc-cner Binary: r-bioc-cner Architecture: arm64 Version: 1.22.0+dfsg-1 Distribution: focal-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Dylan Aïssi Description: r-bioc-cner - CNE Detection and Visualization Changes: r-bioc-cner (1.22.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 Checksums-Sha1: a02c09adb29fd2b9878b441901678b67831f90f9 293952 r-bioc-cner-dbgsym_1.22.0+dfsg-1_arm64.ddeb df128fed7b2cf706760b77fc6300ddcd64cb522f 11674 r-bioc-cner_1.22.0+dfsg-1_arm64.buildinfo e479f8d7e278eb165ed11b6ccd056da5e3645371 8283576 r-bioc-cner_1.22.0+dfsg-1_arm64.deb Checksums-Sha256: e23dacb266c9f3ed782140f08f192d9db6b0824d5fe65b1258852b99f6e7a1a9 293952 r-bioc-cner-dbgsym_1.22.0+dfsg-1_arm64.ddeb 219fbd5b230c1a54245edfdbce4f46caccd7ad7d08a9f31f74b3a1d2993d16e6 11674 r-bioc-cner_1.22.0+dfsg-1_arm64.buildinfo f377969deaf06abae624dadaf8278f2df49880e129d656b21ed8eddbb1a1e06f 8283576 r-bioc-cner_1.22.0+dfsg-1_arm64.deb Files: 45f17b721ee9c77d5cadea64cb38ef83 293952 debug optional r-bioc-cner-dbgsym_1.22.0+dfsg-1_arm64.ddeb e83cc74f351fcff3e38816b24310ac09 11674 gnu-r optional r-bioc-cner_1.22.0+dfsg-1_arm64.buildinfo 5755caf298abc08d41425976047204de 8283576 gnu-r optional r-bioc-cner_1.22.0+dfsg-1_arm64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-bioc-cner_1.22.0+dfsg-1_arm64.deb ----------------------------------- new debian package, version 2.0. size 8283576 bytes: control archive=2844 bytes. 1173 bytes, 14 lines control 5732 bytes, 69 lines md5sums Package: r-bioc-cner Version: 1.22.0+dfsg-1 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian R Packages Maintainers Installed-Size: 17861 Depends: r-base-core (>= 3.6.1-7), r-api-3.5, r-api-bioc-3.10, r-bioc-biostrings (>= 2.33.4), r-cran-dbi (>= 0.7), r-cran-rsqlite (>= 0.11.4), r-bioc-genomeinfodb (>= 1.1.3), r-bioc-genomicranges (>= 1.23.16), r-bioc-rtracklayer (>= 1.25.5), r-bioc-xvector (>= 0.5.4), r-bioc-genomicalignments (>= 1.1.9), r-bioc-s4vectors (>= 0.13.13), r-bioc-iranges (>= 2.5.27), r-cran-readr (>= 0.2.2), r-bioc-biocgenerics, r-cran-reshape2 (>= 1.4.1), r-cran-ggplot2 (>= 2.1.0), r-cran-powerlaw (>= 0.60.3), r-bioc-annotate (>= 1.50.0), r-bioc-go.db (>= 3.3.0), r-cran-r.utils (>= 2.3.0), r-bioc-keggrest (>= 1.14.0), libc6 (>= 2.28) Suggests: r-bioc-gviz (>= 1.7.4), r-cran-knitr, r-cran-rmarkdown, r-cran-testthat Section: gnu-r Priority: optional Homepage: https://bioconductor.org/packages/CNEr/ Description: CNE Detection and Visualization Large-scale identification and advanced visualization of sets of conserved noncoding elements. drwxr-xr-x root/root 0 2019-11-12 06:26 ./ drwxr-xr-x root/root 0 2019-11-12 06:26 ./usr/ drwxr-xr-x root/root 0 2019-11-12 06:26 ./usr/lib/ drwxr-xr-x root/root 0 2019-11-12 06:26 ./usr/lib/R/ drwxr-xr-x root/root 0 2019-11-12 06:26 ./usr/lib/R/site-library/ drwxr-xr-x root/root 0 2019-11-12 06:26 ./usr/lib/R/site-library/CNEr/ -rw-r--r-- root/root 778 2019-11-12 06:26 ./usr/lib/R/site-library/CNEr/CITATION -rw-r--r-- root/root 1945 2019-11-12 06:26 ./usr/lib/R/site-library/CNEr/DESCRIPTION -rw-r--r-- root/root 2503 2019-11-12 06:26 ./usr/lib/R/site-library/CNEr/INDEX drwxr-xr-x root/root 0 2019-11-12 06:26 ./usr/lib/R/site-library/CNEr/Meta/ -rw-r--r-- root/root 2228 2019-11-12 06:26 ./usr/lib/R/site-library/CNEr/Meta/Rd.rds -rw-r--r-- root/root 238 2019-11-12 06:26 ./usr/lib/R/site-library/CNEr/Meta/data.rds -rw-r--r-- root/root 132 2019-11-12 06:26 ./usr/lib/R/site-library/CNEr/Meta/features.rds -rw-r--r-- root/root 2152 2019-11-12 06:26 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Source-Version: 1.22.0+dfsg-1 Space: 45124 Status: successful Version: 1.22.0+dfsg-1 -------------------------------------------------------------------------------- Finished at 20191114-1742 Build needed 00:03:44, 45124k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=arm64 PACKAGEBUILD-18093302 Scanning for processes to kill in build PACKAGEBUILD-18093302