https://launchpad.net/ubuntu/+source/r-bioc-cner/1.24.0+dfsg-1build1/+build/19385925 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux riscv64-qemu-lcy01-020 5.4.0-21-generic #25-Ubuntu SMP Tue Mar 31 01:57:06 UTC 2020 riscv64 Buildd toolchain package versions: launchpad-buildd_188 python-lpbuildd_188 sbuild_0.79.0-1ubuntu1 git_1:2.25.1-1ubuntu1 dpkg-dev_1.19.7ubuntu2 python-debian_0.1.36build1. Syncing the system clock with the buildd NTP service... 31 May 22:53:37 ntpdate[994771]: adjust time server 10.211.37.1 offset -0.000650 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=groovy --arch=riscv64 PACKAGEBUILD-19385925 --image-type chroot /home/buildd/filecache-default/f3eb94e98b295919e6c8d0c40a2cb7b393a0119c Creating target for build PACKAGEBUILD-19385925 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=groovy --arch=riscv64 PACKAGEBUILD-19385925 Starting target for build PACKAGEBUILD-19385925 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=groovy --arch=riscv64 PACKAGEBUILD-19385925 'deb http://ftpmaster.internal/ubuntu groovy main universe' 'deb http://ftpmaster.internal/ubuntu groovy-security main universe' 'deb http://ftpmaster.internal/ubuntu groovy-updates main universe' 'deb http://ftpmaster.internal/ubuntu groovy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-19385925 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=groovy --arch=riscv64 PACKAGEBUILD-19385925 Updating target for build PACKAGEBUILD-19385925 Get:1 http://ftpmaster.internal/ubuntu groovy InRelease [268 kB] Get:2 http://ftpmaster.internal/ubuntu groovy-security InRelease [89.1 kB] Get:3 http://ftpmaster.internal/ubuntu groovy-updates InRelease [89.1 kB] Get:4 http://ftpmaster.internal/ubuntu groovy-proposed InRelease [119 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main riscv64 Packages [881 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main Translation-en [507 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/universe riscv64 Packages [8081 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/universe Translation-en [5178 kB] Get:9 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 Packages [31.8 kB] Get:10 http://ftpmaster.internal/ubuntu groovy-proposed/main Translation-en [25.0 kB] Get:11 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 Packages [373 kB] Get:12 http://ftpmaster.internal/ubuntu groovy-proposed/universe Translation-en [263 kB] Fetched 15.9 MB in 28s (571 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be REMOVED: libgcc1* The following packages will be upgraded: apt base-files binutils binutils-common binutils-riscv64-linux-gnu bzip2 cpp-9 dash debconf debianutils e2fsprogs g++-9 gcc-10-base gcc-8-base gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv gzip libacl1 libapt-pkg6.0 libatomic1 libbinutils libbz2-1.0 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libext2fs2 libgcc-9-dev libgcc-s1 libgomp1 libgpm2 libidn2-0 libncursesw6 libperl5.30 libsqlite3-0 libss2 libssl1.1 libstdc++-9-dev libstdc++6 libsystemd0 libtinfo6 libudev1 logsave make ncurses-base ncurses-bin openssl perl perl-base perl-modules-5.30 sysvinit-utils 57 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. Need to get 41.1 MB of archives. After this operation, 138 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu groovy/main riscv64 libcrypt-dev riscv64 1:4.4.15-1ubuntu1 [205 kB] Get:2 http://ftpmaster.internal/ubuntu groovy/main riscv64 libcrypt1 riscv64 1:4.4.15-1ubuntu1 [94.1 kB] Get:3 http://ftpmaster.internal/ubuntu groovy/main riscv64 base-files riscv64 11ubuntu7 [59.7 kB] Get:4 http://ftpmaster.internal/ubuntu groovy/main riscv64 debianutils riscv64 4.11 [84.5 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main riscv64 perl-modules-5.30 all 5.30.2-1 [2740 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main riscv64 libperl5.30 riscv64 5.30.2-1 [3437 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/main riscv64 perl riscv64 5.30.2-1 [224 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/main riscv64 perl-base riscv64 5.30.2-1 [1420 kB] Get:9 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 bzip2 riscv64 1.0.8-3 [32.6 kB] Get:10 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 libbz2-1.0 riscv64 1.0.8-3 [34.5 kB] Get:11 http://ftpmaster.internal/ubuntu groovy/main riscv64 debconf all 1.5.74 [121 kB] Get:12 http://ftpmaster.internal/ubuntu groovy/main riscv64 dash riscv64 0.5.10.2-7 [82.0 kB] Get:13 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 gzip riscv64 1.10-2ubuntu1 [91.7 kB] Get:14 http://ftpmaster.internal/ubuntu groovy/main riscv64 ncurses-bin riscv64 6.2-1 [166 kB] Get:15 http://ftpmaster.internal/ubuntu groovy/main riscv64 ncurses-base all 6.2-1 [18.7 kB] Get:16 http://ftpmaster.internal/ubuntu groovy/main riscv64 sysvinit-utils riscv64 2.96-3ubuntu1 [19.6 kB] Get:17 http://ftpmaster.internal/ubuntu groovy/main riscv64 libatomic1 riscv64 10.1.0-3ubuntu1 [7480 B] Get:18 http://ftpmaster.internal/ubuntu groovy/main riscv64 libgomp1 riscv64 10.1.0-3ubuntu1 [83.5 kB] Get:19 http://ftpmaster.internal/ubuntu groovy/main riscv64 gcc-10-base riscv64 10.1.0-3ubuntu1 [20.1 kB] Get:20 http://ftpmaster.internal/ubuntu groovy/main riscv64 libgcc-s1 riscv64 10.1.0-3ubuntu1 [40.4 kB] Get:21 http://ftpmaster.internal/ubuntu groovy/main riscv64 libcc1-0 riscv64 10.1.0-3ubuntu1 [38.1 kB] Get:22 http://ftpmaster.internal/ubuntu groovy/main riscv64 libstdc++6 riscv64 10.1.0-3ubuntu1 [507 kB] Get:23 http://ftpmaster.internal/ubuntu groovy/main riscv64 libsystemd0 riscv64 245.5-3ubuntu1 [239 kB] Get:24 http://ftpmaster.internal/ubuntu groovy/main riscv64 libudev1 riscv64 245.5-3ubuntu1 [66.5 kB] Get:25 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 libapt-pkg6.0 riscv64 2.1.5 [803 kB] Get:26 http://ftpmaster.internal/ubuntu groovy/main riscv64 gpgv riscv64 2.2.20-1ubuntu1 [181 kB] Get:27 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 apt riscv64 2.1.5 [1235 kB] Get:28 http://ftpmaster.internal/ubuntu groovy/main riscv64 logsave riscv64 1.45.6-1ubuntu1 [9708 B] Get:29 http://ftpmaster.internal/ubuntu groovy/main riscv64 libext2fs2 riscv64 1.45.6-1ubuntu1 [175 kB] Get:30 http://ftpmaster.internal/ubuntu groovy/main riscv64 e2fsprogs riscv64 1.45.6-1ubuntu1 [496 kB] Get:31 http://ftpmaster.internal/ubuntu groovy/main riscv64 libacl1 riscv64 2.2.53-8 [16.4 kB] Get:32 http://ftpmaster.internal/ubuntu groovy/main riscv64 libncursesw6 riscv64 6.2-1 [116 kB] Get:33 http://ftpmaster.internal/ubuntu groovy/main riscv64 libtinfo6 riscv64 6.2-1 [78.7 kB] Get:34 http://ftpmaster.internal/ubuntu groovy/main riscv64 libidn2-0 riscv64 2.3.0-1 [50.5 kB] Get:35 http://ftpmaster.internal/ubuntu groovy/main riscv64 libcom-err2 riscv64 1.45.6-1ubuntu1 [8564 B] Get:36 http://ftpmaster.internal/ubuntu groovy/main riscv64 libss2 riscv64 1.45.6-1ubuntu1 [9820 B] Get:37 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 libsqlite3-0 riscv64 3.32.1-1 [488 kB] Get:38 http://ftpmaster.internal/ubuntu groovy/main riscv64 libssl1.1 riscv64 1.1.1f-1ubuntu2 [967 kB] Get:39 http://ftpmaster.internal/ubuntu groovy/main riscv64 openssl riscv64 1.1.1f-1ubuntu2 [595 kB] Get:40 http://ftpmaster.internal/ubuntu groovy/main riscv64 libctf0 riscv64 2.34-7ubuntu1 [39.9 kB] Get:41 http://ftpmaster.internal/ubuntu groovy/main riscv64 binutils-riscv64-linux-gnu riscv64 2.34-7ubuntu1 [646 kB] Get:42 http://ftpmaster.internal/ubuntu groovy/main riscv64 libbinutils riscv64 2.34-7ubuntu1 [279 kB] Get:43 http://ftpmaster.internal/ubuntu groovy/main riscv64 binutils riscv64 2.34-7ubuntu1 [3288 B] Get:44 http://ftpmaster.internal/ubuntu groovy/main riscv64 binutils-common riscv64 2.34-7ubuntu1 [199 kB] Get:45 http://ftpmaster.internal/ubuntu groovy/main riscv64 libctf-nobfd0 riscv64 2.34-7ubuntu1 [40.7 kB] Get:46 http://ftpmaster.internal/ubuntu groovy/main riscv64 g++-9 riscv64 9.3.0-13ubuntu1 [6931 kB] Get:47 http://ftpmaster.internal/ubuntu groovy/main riscv64 gcc-9 riscv64 9.3.0-13ubuntu1 [6789 kB] Get:48 http://ftpmaster.internal/ubuntu groovy/main riscv64 libstdc++-9-dev riscv64 9.3.0-13ubuntu1 [3670 kB] Get:49 http://ftpmaster.internal/ubuntu groovy/main riscv64 libgcc-9-dev riscv64 9.3.0-13ubuntu1 [405 kB] Get:50 http://ftpmaster.internal/ubuntu groovy/main riscv64 cpp-9 riscv64 9.3.0-13ubuntu1 [6047 kB] Get:51 http://ftpmaster.internal/ubuntu groovy/main riscv64 gcc-9-base riscv64 9.3.0-13ubuntu1 [19.6 kB] Get:52 http://ftpmaster.internal/ubuntu groovy/universe riscv64 gcc-8-base riscv64 8.4.0-4ubuntu1 [18.4 kB] Get:53 http://ftpmaster.internal/ubuntu groovy/main riscv64 gpg riscv64 2.2.20-1ubuntu1 [439 kB] Get:54 http://ftpmaster.internal/ubuntu groovy/main riscv64 gpgconf riscv64 2.2.20-1ubuntu1 [110 kB] Get:55 http://ftpmaster.internal/ubuntu groovy/main riscv64 gpg-agent riscv64 2.2.20-1ubuntu1 [202 kB] Get:56 http://ftpmaster.internal/ubuntu groovy/main riscv64 libgpm2 riscv64 1.20.7-6 [14.2 kB] Get:57 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 make riscv64 4.3-1 [157 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 41.1 MB in 8s (5192 kB/s) (Reading database ... 9817 files and directories currently installed.) 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Setting up libcom-err2:riscv64 (1.45.6-1ubuntu1) ... Setting up libgomp1:riscv64 (10.1.0-3ubuntu1) ... Setting up bzip2 (1.0.8-3) ... Setting up make (4.3-1) ... Setting up libatomic1:riscv64 (10.1.0-3ubuntu1) ... Setting up libss2:riscv64 (1.45.6-1ubuntu1) ... Setting up gcc-8-base:riscv64 (8.4.0-4ubuntu1) ... Setting up libncursesw6:riscv64 (6.2-1) ... Setting up logsave (1.45.6-1ubuntu1) ... Setting up libcrypt-dev:riscv64 (1:4.4.15-1ubuntu1) ... Setting up gpgconf (2.2.20-1ubuntu1) ... Setting up libperl5.30:riscv64 (5.30.2-1) ... Setting up libbinutils:riscv64 (2.34-7ubuntu1) ... Setting up openssl (1.1.1f-1ubuntu2) ... Setting up libcc1-0:riscv64 (10.1.0-3ubuntu1) ... Setting up gpg (2.2.20-1ubuntu1) ... Setting up gcc-9-base:riscv64 (9.3.0-13ubuntu1) ... Setting up libctf0:riscv64 (2.34-7ubuntu1) ... Setting up gpg-agent (2.2.20-1ubuntu1) ... Setting up binutils-riscv64-linux-gnu (2.34-7ubuntu1) ... Setting up e2fsprogs (1.45.6-1ubuntu1) ... Installing new version of config file /etc/mke2fs.conf ... Setting up binutils (2.34-7ubuntu1) ... Setting up libgcc-9-dev:riscv64 (9.3.0-13ubuntu1) ... Setting up perl (5.30.2-1) ... Setting up cpp-9 (9.3.0-13ubuntu1) ... Setting up gcc-9 (9.3.0-13ubuntu1) ... Setting up libstdc++-9-dev:riscv64 (9.3.0-13ubuntu1) ... Setting up g++-9 (9.3.0-13ubuntu1) ... Processing triggers for libc-bin (2.31-0ubuntu9) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-19385925 riscv64 groovy-proposed -c chroot:build-PACKAGEBUILD-19385925 --arch=riscv64 --dist=groovy-proposed --nolog r-bioc-cner_1.24.0+dfsg-1build1.dsc Initiating build PACKAGEBUILD-19385925 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 5.4.0-21-generic #25-Ubuntu SMP Tue Mar 31 01:57:06 UTC 2020 riscv64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on riscv64-qemu-lcy01-020.buildd +==============================================================================+ | r-bioc-cner 1.24.0+dfsg-1build1 (riscv64) Sun, 31 May 2020 22:57:40 +0000 | +==============================================================================+ Package: r-bioc-cner Version: 1.24.0+dfsg-1build1 Source Version: 1.24.0+dfsg-1build1 Distribution: groovy-proposed Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-19385925/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-cner-7IYdH8/resolver-oIlf7P' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-bioc-cner_1.24.0+dfsg-1build1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/r-bioc-cner-7IYdH8/r-bioc-cner-1.24.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-cner-7IYdH8' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), dh-r (>= 20180527), r-base-dev, r-bioc-biostrings (>= 2.33.4), r-cran-dbi (>= 0.7), r-cran-rsqlite, r-bioc-genomeinfodb (>= 1.1.3), r-bioc-genomicranges (>= 1.23.16), r-bioc-rtracklayer (>= 1.25.5), r-bioc-xvector (>= 0.5.4), r-bioc-genomicalignments (>= 1.1.9), r-bioc-s4vectors (>= 0.13.13), r-bioc-iranges (>= 2.5.27), r-cran-readr, r-bioc-biocgenerics, r-cran-reshape2 (>= 1.4.1), r-cran-ggplot2 (>= 2.1.0), r-cran-powerlaw, r-bioc-annotate, r-bioc-go.db, r-cran-r.utils, r-bioc-keggrest, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 12), dh-r (>= 20180527), r-base-dev, r-bioc-biostrings (>= 2.33.4), r-cran-dbi (>= 0.7), r-cran-rsqlite, r-bioc-genomeinfodb (>= 1.1.3), r-bioc-genomicranges (>= 1.23.16), r-bioc-rtracklayer (>= 1.25.5), r-bioc-xvector (>= 0.5.4), r-bioc-genomicalignments (>= 1.1.9), r-bioc-s4vectors (>= 0.13.13), r-bioc-iranges (>= 2.5.27), r-cran-readr, r-bioc-biocgenerics, r-cran-reshape2 (>= 1.4.1), r-cran-ggplot2 (>= 2.1.0), r-cran-powerlaw, r-bioc-annotate, r-bioc-go.db, r-cran-r.utils, r-bioc-keggrest, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [571 B] Get:5 copy:/<>/apt_archive ./ Packages [661 B] Fetched 2195 B in 0s (4996 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libgpm2 Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-9 groff-base icu-devtools intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libboost-dev libboost1.71-dev libbrotli1 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-9-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu-dev libicu66 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libncurses-dev libncurses5-dev libncurses6 libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db pkg-config po-debconf r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-go.db r-bioc-iranges r-bioc-keggrest r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-askpass r-cran-assertthat r-cran-backports r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-callr r-cran-cli r-cran-clipr r-cran-colorspace r-cran-crayon r-cran-curl r-cran-dbi r-cran-desc r-cran-digest r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-hms r-cran-httr r-cran-isoband r-cran-jsonlite r-cran-labeling r-cran-lambda.r r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plyr r-cran-png r-cran-powerlaw r-cran-pracma r-cran-praise r-cran-prettyunits r-cran-processx r-cran-ps r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-readr r-cran-reshape2 r-cran-rlang r-cran-rprojroot r-cran-rsqlite r-cran-rstudioapi r-cran-scales r-cran-snow r-cran-stringi r-cran-stringr r-cran-sys r-cran-testthat r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xml r-cran-xtable tzdata ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc gfortran-9-doc libcoarrays-dev groff liblapack-doc libboost-doc libboost1.71-doc libboost-atomic1.71-dev libboost-chrono1.71-dev libboost-container1.71-dev libboost-context1.71-dev libboost-contract1.71-dev libboost-coroutine1.71-dev libboost-date-time1.71-dev libboost-exception1.71-dev libboost-fiber1.71-dev libboost-filesystem1.71-dev libboost-graph1.71-dev libboost-graph-parallel1.71-dev libboost-iostreams1.71-dev libboost-locale1.71-dev libboost-log1.71-dev libboost-math1.71-dev libboost-mpi1.71-dev libboost-mpi-python1.71-dev libboost-numpy1.71-dev libboost-program-options1.71-dev libboost-python1.71-dev libboost-random1.71-dev libboost-regex1.71-dev libboost-serialization1.71-dev libboost-stacktrace1.71-dev libboost-system1.71-dev libboost-test1.71-dev libboost-thread1.71-dev libboost-timer1.71-dev libboost-type-erasure1.71-dev libboost-wave1.71-dev libboost1.71-tools-dev libmpfrc++-dev libntl-dev krb5-doc krb5-user icu-doc liblzma-doc ncurses-doc readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk m4-doc apparmor less www-browser libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo r-bioc-genefilter r-bioc-org.hs.eg.db r-cran-runit r-bioc-graph r-cran-knitr r-bioc-all r-bioc-affy r-bioc-deseq2 r-cran-foreach r-cran-bbmisc r-bioc-variantannotation r-bioc-shortread r-cran-codetools r-cran-data.table r-bioc-bsgenome r-bioc-genomicfeatures r-bioc-edger r-bioc-gviz r-bioc-annotationhub r-bioc-limma r-cran-rmarkdown r-bioc-rhdf5 r-cran-covr r-cran-htmlwidgets r-cran-prettycode r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shiny r-cran-shinyjs r-cran-dplyr r-cran-jpeg r-cran-viridis r-cran-rmysql r-cran-unitizer r-cran-hmisc r-cran-maps r-cran-maptools r-cran-multcomp r-cran-quantreg r-cran-rpart r-cran-sf r-cran-svglite r-cran-forcats r-cran-lubridate r-cran-httpuv r-cran-xml2 r-cran-magick r-cran-getopt r-cran-base64enc r-cran-doparallel r-cran-iterators r-cran-itertools r-cran-quadprog r-cran-inline r-cran-mockr r-cran-dichromat r-cran-rmpi r-cran-rsprng r-cran-rlecuyer r-cran-devtools r-cran-usethis r-cran-htmltools r-cran-purrr r-cran-tidyr r-cran-zeallot r-cran-plm r-cran-zoo r-cran-survival Recommended packages: devscripts curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libpng-tools publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl r-recommended r-doc-html r-cran-runit r-cran-batchjobs r-cran-doparallel r-cran-batchtools r-cran-rmpi r-bioc-genefilter r-bioc-shortread r-cran-cliapp r-cran-mockery r-cran-httpuv r-cran-webutils r-cran-testit r-cran-codetools r-cran-survival r-cran-sp r-cran-mapproj r-cran-hexbin r-cran-vdiffr r-cran-sodium r-cran-lubridate r-cran-domc r-cran-abind r-cran-rmarkdown r-cran-dbitest r-cran-htmltools r-cran-htmlwidgets r-cran-xml2 r-cran-data.table r-cran-knitr r-cran-dplyr r-cran-mockr r-cran-generics libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-9 groff-base icu-devtools intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libboost-dev libboost1.71-dev libbrotli1 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-9-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu-dev libicu66 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libncurses-dev libncurses5-dev libncurses6 libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db pkg-config po-debconf r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-go.db r-bioc-iranges r-bioc-keggrest r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-askpass r-cran-assertthat r-cran-backports r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-callr r-cran-cli r-cran-clipr r-cran-colorspace r-cran-crayon r-cran-curl r-cran-dbi r-cran-desc r-cran-digest r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-hms r-cran-httr r-cran-isoband r-cran-jsonlite r-cran-labeling r-cran-lambda.r r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plyr r-cran-png r-cran-powerlaw r-cran-pracma r-cran-praise r-cran-prettyunits r-cran-processx r-cran-ps r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-readr r-cran-reshape2 r-cran-rlang r-cran-rprojroot r-cran-rsqlite r-cran-rstudioapi r-cran-scales r-cran-snow r-cran-stringi r-cran-stringr r-cran-sys r-cran-testthat r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xml r-cran-xtable sbuild-build-depends-main-dummy tzdata ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 252 newly installed, 0 to remove and 0 not upgraded. Need to get 219 MB of archives. After this operation, 769 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1088 B] Get:2 http://ftpmaster.internal/ubuntu groovy/main riscv64 libbsd0 riscv64 0.10.0-1 [42.0 kB] Get:3 http://ftpmaster.internal/ubuntu groovy/main riscv64 bsdmainutils riscv64 11.1.2ubuntu3 [176 kB] Get:4 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 libuchardet0 riscv64 0.0.7-1 [67.7 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main riscv64 groff-base riscv64 1.22.4-5 [815 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main riscv64 libpipeline1 riscv64 1.5.2-2build1 [23.9 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/main riscv64 man-db riscv64 2.9.1-1 [1075 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/main riscv64 libncurses6 riscv64 6.2-1 [86.2 kB] Get:9 http://ftpmaster.internal/ubuntu groovy/main riscv64 libmagic-mgc riscv64 1:5.38-5 [218 kB] Get:10 http://ftpmaster.internal/ubuntu groovy/main riscv64 libmagic1 riscv64 1:5.38-5 [70.6 kB] Get:11 http://ftpmaster.internal/ubuntu groovy/main riscv64 file riscv64 1:5.38-5 [22.5 kB] Get:12 http://ftpmaster.internal/ubuntu groovy/main riscv64 libelf1 riscv64 0.176-1.1build1 [41.8 kB] Get:13 http://ftpmaster.internal/ubuntu groovy/main riscv64 libexpat1 riscv64 2.2.9-1build1 [68.8 kB] Get:14 http://ftpmaster.internal/ubuntu groovy/main riscv64 libfribidi0 riscv64 1.0.8-2 [23.8 kB] Get:15 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 libglib2.0-0 riscv64 2.64.3-1 [1124 kB] Get:16 http://ftpmaster.internal/ubuntu groovy/main riscv64 tzdata all 2020a-0ubuntu1 [293 kB] Get:17 http://ftpmaster.internal/ubuntu groovy/main riscv64 libicu66 riscv64 66.1-2ubuntu2 [8406 kB] Get:18 http://ftpmaster.internal/ubuntu groovy/main riscv64 libxml2 riscv64 2.9.10+dfsg-5 [559 kB] Get:19 http://ftpmaster.internal/ubuntu groovy/main riscv64 ucf all 3.0042 [56.0 kB] Get:20 http://ftpmaster.internal/ubuntu groovy/main riscv64 gettext-base riscv64 0.19.8.1-10build1 [47.4 kB] Get:21 http://ftpmaster.internal/ubuntu groovy/main riscv64 libkrb5support0 riscv64 1.17-6ubuntu4 [28.3 kB] Get:22 http://ftpmaster.internal/ubuntu groovy/main riscv64 libk5crypto3 riscv64 1.17-6ubuntu4 [91.8 kB] Get:23 http://ftpmaster.internal/ubuntu groovy/main riscv64 libkeyutils1 riscv64 1.6.1-2ubuntu1 [9192 B] Get:24 http://ftpmaster.internal/ubuntu groovy/main riscv64 libkrb5-3 riscv64 1.17-6ubuntu4 [295 kB] Get:25 http://ftpmaster.internal/ubuntu groovy/main riscv64 libgssapi-krb5-2 riscv64 1.17-6ubuntu4 [107 kB] Get:26 http://ftpmaster.internal/ubuntu groovy/main riscv64 libpsl5 riscv64 0.21.0-1ubuntu1 [50.5 kB] Get:27 http://ftpmaster.internal/ubuntu groovy/main riscv64 libxau6 riscv64 1:1.0.9-0ubuntu1 [6788 B] Get:28 http://ftpmaster.internal/ubuntu groovy/main riscv64 libxdmcp6 riscv64 1:1.1.3-0ubuntu1 [9952 B] Get:29 http://ftpmaster.internal/ubuntu groovy/main riscv64 libxcb1 riscv64 1.14-2 [37.9 kB] Get:30 http://ftpmaster.internal/ubuntu groovy/main riscv64 libx11-data all 2:1.6.9-2ubuntu1 [113 kB] Get:31 http://ftpmaster.internal/ubuntu groovy/main riscv64 libx11-6 riscv64 2:1.6.9-2ubuntu1 [537 kB] Get:32 http://ftpmaster.internal/ubuntu groovy/main riscv64 libxext6 riscv64 2:1.3.4-0ubuntu1 [25.6 kB] Get:33 http://ftpmaster.internal/ubuntu groovy/main riscv64 libxmuu1 riscv64 2:1.1.3-0ubuntu1 [9040 B] Get:34 http://ftpmaster.internal/ubuntu groovy/main riscv64 xauth riscv64 1:1.1-0ubuntu1 [22.4 kB] Get:35 http://ftpmaster.internal/ubuntu groovy/main riscv64 libsigsegv2 riscv64 2.12-2 [13.0 kB] Get:36 http://ftpmaster.internal/ubuntu groovy/main riscv64 m4 riscv64 1.4.18-4 [188 kB] Get:37 http://ftpmaster.internal/ubuntu groovy/main riscv64 autoconf all 2.69-11.1 [321 kB] Get:38 http://ftpmaster.internal/ubuntu groovy/main riscv64 autotools-dev all 20180224.1 [39.6 kB] Get:39 http://ftpmaster.internal/ubuntu groovy/main riscv64 automake all 1:1.16.2-1ubuntu1 [521 kB] Get:40 http://ftpmaster.internal/ubuntu groovy/main riscv64 autopoint all 0.19.8.1-10build1 [412 kB] Get:41 http://ftpmaster.internal/ubuntu groovy/main riscv64 dctrl-tools riscv64 2.24-3 [55.8 kB] Get:42 http://ftpmaster.internal/ubuntu groovy/main riscv64 libtool all 2.4.6-14 [161 kB] Get:43 http://ftpmaster.internal/ubuntu groovy/main riscv64 dh-autoreconf all 19 [16.1 kB] Get:44 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 libdebhelper-perl all 13.1ubuntu1 [64.0 kB] Get:45 http://ftpmaster.internal/ubuntu groovy/main riscv64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:46 http://ftpmaster.internal/ubuntu groovy/main riscv64 libsub-override-perl all 0.09-2 [9532 B] Get:47 http://ftpmaster.internal/ubuntu groovy/main riscv64 libfile-stripnondeterminism-perl all 1.8.1-1 [17.1 kB] Get:48 http://ftpmaster.internal/ubuntu groovy/main riscv64 dh-strip-nondeterminism all 1.8.1-1 [5232 B] Get:49 http://ftpmaster.internal/ubuntu groovy/main riscv64 dwz riscv64 0.13-5 [147 kB] Get:50 http://ftpmaster.internal/ubuntu groovy/main riscv64 libcroco3 riscv64 0.6.13-1 [71.1 kB] Get:51 http://ftpmaster.internal/ubuntu groovy/main riscv64 gettext riscv64 0.19.8.1-10build1 [844 kB] Get:52 http://ftpmaster.internal/ubuntu groovy/main riscv64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:53 http://ftpmaster.internal/ubuntu groovy/main riscv64 po-debconf all 1.0.21 [233 kB] Get:54 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 debhelper all 13.1ubuntu1 [885 kB] Get:55 http://ftpmaster.internal/ubuntu groovy/main riscv64 zip riscv64 3.0-11build1 [156 kB] Get:56 http://ftpmaster.internal/ubuntu groovy/main riscv64 unzip riscv64 6.0-25ubuntu1 [157 kB] Get:57 http://ftpmaster.internal/ubuntu groovy/main riscv64 libpaper1 riscv64 1.1.28 [12.2 kB] Get:58 http://ftpmaster.internal/ubuntu groovy/main riscv64 libpaper-utils riscv64 1.1.28 [8044 B] Get:59 http://ftpmaster.internal/ubuntu groovy/main riscv64 xdg-utils all 1.1.3-2ubuntu1 [61.6 kB] Get:60 http://ftpmaster.internal/ubuntu groovy/main riscv64 libblas3 riscv64 3.9.0-2 [106 kB] Get:61 http://ftpmaster.internal/ubuntu groovy/main riscv64 libfreetype6 riscv64 2.10.1-2 [313 kB] Get:62 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 fonts-dejavu-core all 2.37-2 [1041 kB] Get:63 http://ftpmaster.internal/ubuntu groovy/main riscv64 fontconfig-config all 2.13.1-2ubuntu3 [28.8 kB] Get:64 http://ftpmaster.internal/ubuntu groovy/main riscv64 libfontconfig1 riscv64 2.13.1-2ubuntu3 [104 kB] Get:65 http://ftpmaster.internal/ubuntu groovy/main riscv64 libpixman-1-0 riscv64 0.38.4-0ubuntu1 [146 kB] Get:66 http://ftpmaster.internal/ubuntu groovy/main riscv64 libxcb-render0 riscv64 1.14-2 [12.8 kB] Get:67 http://ftpmaster.internal/ubuntu groovy/main riscv64 libxcb-shm0 riscv64 1.14-2 [5032 B] Get:68 http://ftpmaster.internal/ubuntu groovy/main riscv64 libxrender1 riscv64 1:0.9.10-1 [16.8 kB] Get:69 http://ftpmaster.internal/ubuntu groovy/main riscv64 libcairo2 riscv64 1.16.0-4ubuntu1 [531 kB] Get:70 http://ftpmaster.internal/ubuntu groovy/main riscv64 libbrotli1 riscv64 1.0.7-6.1 [279 kB] Get:71 http://ftpmaster.internal/ubuntu groovy/main riscv64 libroken18-heimdal riscv64 7.7.0+dfsg-2 [36.5 kB] Get:72 http://ftpmaster.internal/ubuntu groovy/main riscv64 libasn1-8-heimdal riscv64 7.7.0+dfsg-2 [145 kB] Get:73 http://ftpmaster.internal/ubuntu groovy/main riscv64 libheimbase1-heimdal riscv64 7.7.0+dfsg-2 [24.6 kB] Get:74 http://ftpmaster.internal/ubuntu groovy/main riscv64 libhcrypto4-heimdal riscv64 7.7.0+dfsg-2 [86.8 kB] Get:75 http://ftpmaster.internal/ubuntu groovy/main riscv64 libwind0-heimdal riscv64 7.7.0+dfsg-2 [47.0 kB] Get:76 http://ftpmaster.internal/ubuntu groovy/main riscv64 libhx509-5-heimdal riscv64 7.7.0+dfsg-2 [89.8 kB] Get:77 http://ftpmaster.internal/ubuntu groovy/main riscv64 libkrb5-26-heimdal riscv64 7.7.0+dfsg-2 [175 kB] Get:78 http://ftpmaster.internal/ubuntu groovy/main riscv64 libheimntlm0-heimdal riscv64 7.7.0+dfsg-2 [13.4 kB] Get:79 http://ftpmaster.internal/ubuntu groovy/main riscv64 libgssapi3-heimdal riscv64 7.7.0+dfsg-2 [83.4 kB] Get:80 http://ftpmaster.internal/ubuntu groovy/main riscv64 libsasl2-modules-db riscv64 2.1.27+dfsg-2 [13.7 kB] Get:81 http://ftpmaster.internal/ubuntu groovy/main riscv64 libsasl2-2 riscv64 2.1.27+dfsg-2 [45.2 kB] Get:82 http://ftpmaster.internal/ubuntu groovy/main riscv64 libldap-common all 2.4.49+dfsg-2ubuntu2 [17.4 kB] Get:83 http://ftpmaster.internal/ubuntu groovy/main riscv64 libldap-2.4-2 riscv64 2.4.49+dfsg-2ubuntu2 [137 kB] Get:84 http://ftpmaster.internal/ubuntu groovy/main riscv64 libnghttp2-14 riscv64 1.40.0-1build1 [70.9 kB] Get:85 http://ftpmaster.internal/ubuntu groovy/main riscv64 librtmp1 riscv64 2.4+20151223.gitfa8646d.1-2build1 [50.8 kB] Get:86 http://ftpmaster.internal/ubuntu groovy/main riscv64 libssh-4 riscv64 0.9.4-1ubuntu1 [148 kB] Get:87 http://ftpmaster.internal/ubuntu groovy/main riscv64 libcurl4 riscv64 7.68.0-1ubuntu2 [208 kB] Get:88 http://ftpmaster.internal/ubuntu groovy/main riscv64 libjpeg-turbo8 riscv64 2.0.3-0ubuntu1 [101 kB] Get:89 http://ftpmaster.internal/ubuntu groovy/main riscv64 libjpeg8 riscv64 8c-2ubuntu8 [2224 B] Get:90 http://ftpmaster.internal/ubuntu groovy/main riscv64 libgfortran5 riscv64 10.1.0-3ubuntu1 [332 kB] Get:91 http://ftpmaster.internal/ubuntu groovy/main riscv64 liblapack3 riscv64 3.9.0-2 [1669 kB] Get:92 http://ftpmaster.internal/ubuntu groovy/main riscv64 fontconfig riscv64 2.13.1-2ubuntu3 [169 kB] Get:93 http://ftpmaster.internal/ubuntu groovy/main riscv64 libgraphite2-3 riscv64 1.3.14-1 [70.5 kB] Get:94 http://ftpmaster.internal/ubuntu groovy/main riscv64 libharfbuzz0b riscv64 2.6.4-1ubuntu4 [397 kB] Get:95 http://ftpmaster.internal/ubuntu groovy/main riscv64 libthai-data all 0.1.28-3 [134 kB] Get:96 http://ftpmaster.internal/ubuntu groovy/main riscv64 libdatrie1 riscv64 0.2.12-3 [16.3 kB] Get:97 http://ftpmaster.internal/ubuntu groovy/main riscv64 libthai0 riscv64 0.1.28-3 [15.8 kB] Get:98 http://ftpmaster.internal/ubuntu groovy/main riscv64 libpango-1.0-0 riscv64 1.44.7-2ubuntu4 [148 kB] Get:99 http://ftpmaster.internal/ubuntu groovy/main riscv64 libpangoft2-1.0-0 riscv64 1.44.7-2ubuntu4 [29.3 kB] Get:100 http://ftpmaster.internal/ubuntu groovy/main riscv64 libpangocairo-1.0-0 riscv64 1.44.7-2ubuntu4 [21.0 kB] Get:101 http://ftpmaster.internal/ubuntu groovy/main riscv64 libtcl8.6 riscv64 8.6.10+dfsg-1 [830 kB] Get:102 http://ftpmaster.internal/ubuntu groovy/main riscv64 libjbig0 riscv64 2.1-3.1build1 [25.7 kB] Get:103 http://ftpmaster.internal/ubuntu groovy/main riscv64 libwebp6 riscv64 0.6.1-2 [150 kB] Get:104 http://ftpmaster.internal/ubuntu groovy/main riscv64 libtiff5 riscv64 4.1.0+git191117-2build1 [147 kB] Get:105 http://ftpmaster.internal/ubuntu groovy/main riscv64 libxft2 riscv64 2.3.3-0ubuntu1 [34.4 kB] Get:106 http://ftpmaster.internal/ubuntu groovy/main riscv64 x11-common all 1:7.7+19ubuntu14 [22.3 kB] Get:107 http://ftpmaster.internal/ubuntu groovy/main riscv64 libxss1 riscv64 1:1.2.3-1 [7496 B] Get:108 http://ftpmaster.internal/ubuntu groovy/main riscv64 libtk8.6 riscv64 8.6.10-1 [646 kB] Get:109 http://ftpmaster.internal/ubuntu groovy/main riscv64 libice6 riscv64 2:1.0.10-0ubuntu1 [34.7 kB] Get:110 http://ftpmaster.internal/ubuntu groovy/main riscv64 libsm6 riscv64 2:1.2.3-1 [14.6 kB] Get:111 http://ftpmaster.internal/ubuntu groovy/main riscv64 libxt6 riscv64 1:1.1.5-1 [136 kB] Get:112 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-base-core riscv64 4.0.0.20200528-1 [24.8 MB] Get:113 http://ftpmaster.internal/ubuntu groovy/main riscv64 libgfortran-9-dev riscv64 9.3.0-13ubuntu1 [887 kB] Get:114 http://ftpmaster.internal/ubuntu groovy/main riscv64 gfortran-9 riscv64 9.3.0-13ubuntu1 [6472 kB] Get:115 http://ftpmaster.internal/ubuntu groovy/main riscv64 gfortran riscv64 4:9.3.0-1ubuntu2 [1368 B] Get:116 http://ftpmaster.internal/ubuntu groovy/main riscv64 libblas-dev riscv64 3.9.0-2 [226 kB] Get:117 http://ftpmaster.internal/ubuntu groovy/main riscv64 liblapack-dev riscv64 3.9.0-2 [8476 kB] Get:118 http://ftpmaster.internal/ubuntu groovy/main riscv64 libncurses-dev riscv64 6.2-1 [691 kB] Get:119 http://ftpmaster.internal/ubuntu groovy/main riscv64 libncurses5-dev riscv64 6.2-1 [976 B] Get:120 http://ftpmaster.internal/ubuntu groovy/main riscv64 libreadline-dev riscv64 8.0-4 [262 kB] Get:121 http://ftpmaster.internal/ubuntu groovy/main riscv64 libjpeg-turbo8-dev riscv64 2.0.3-0ubuntu1 [358 kB] Get:122 http://ftpmaster.internal/ubuntu groovy/main riscv64 libjpeg8-dev riscv64 8c-2ubuntu8 [1692 B] Get:123 http://ftpmaster.internal/ubuntu groovy/main riscv64 libjpeg-dev riscv64 8c-2ubuntu8 [1688 B] Get:124 http://ftpmaster.internal/ubuntu groovy/main riscv64 libpcre2-16-0 riscv64 10.34-7 [107 kB] Get:125 http://ftpmaster.internal/ubuntu groovy/main riscv64 libpcre2-32-0 riscv64 10.34-7 [99.3 kB] Get:126 http://ftpmaster.internal/ubuntu groovy/main riscv64 libpcre2-posix2 riscv64 10.34-7 [5308 B] Get:127 http://ftpmaster.internal/ubuntu groovy/main riscv64 libpcre2-dev riscv64 10.34-7 [905 kB] Get:128 http://ftpmaster.internal/ubuntu groovy/main riscv64 libpcre16-3 riscv64 2:8.39-12build1 [81.1 kB] Get:129 http://ftpmaster.internal/ubuntu groovy/main riscv64 libpcre32-3 riscv64 2:8.39-12build1 [74.6 kB] Get:130 http://ftpmaster.internal/ubuntu groovy/main riscv64 libpcrecpp0v5 riscv64 2:8.39-12build1 [14.7 kB] Get:131 http://ftpmaster.internal/ubuntu groovy/main riscv64 libpcre3-dev riscv64 2:8.39-12build1 [710 kB] Get:132 http://ftpmaster.internal/ubuntu groovy/main riscv64 zlib1g-dev riscv64 1:1.2.11.dfsg-2ubuntu1 [207 kB] Get:133 http://ftpmaster.internal/ubuntu groovy/main riscv64 libpng-dev riscv64 1.6.37-2 [287 kB] Get:134 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 libbz2-dev riscv64 1.0.8-3 [66.7 kB] Get:135 http://ftpmaster.internal/ubuntu groovy/main riscv64 liblzma-dev riscv64 5.2.4-1 [226 kB] Get:136 http://ftpmaster.internal/ubuntu groovy/main riscv64 icu-devtools riscv64 66.1-2ubuntu2 [177 kB] Get:137 http://ftpmaster.internal/ubuntu groovy/main riscv64 libicu-dev riscv64 66.1-2ubuntu2 [12.5 MB] Get:138 http://ftpmaster.internal/ubuntu groovy/main riscv64 pkg-config riscv64 0.29.2-1ubuntu1 [43.7 kB] Get:139 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-base-dev all 4.0.0.20200528-1 [4524 B] Get:140 http://ftpmaster.internal/ubuntu groovy/main riscv64 libfile-which-perl all 1.23-1 [13.8 kB] Get:141 http://ftpmaster.internal/ubuntu groovy/universe riscv64 libswitch-perl all 2.17-2 [18.8 kB] Get:142 http://ftpmaster.internal/ubuntu groovy/universe riscv64 dh-r all 20200314 [35.5 kB] Get:143 http://ftpmaster.internal/ubuntu groovy/main riscv64 libboost1.71-dev riscv64 1.71.0-6ubuntu8 [9070 kB] Get:144 http://ftpmaster.internal/ubuntu groovy/main riscv64 libboost-dev riscv64 1.71.0.0ubuntu4 [3504 B] Get:145 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-littler riscv64 0.3.9-1build1 [297 kB] Get:146 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 littler all 0.3.9-1build1 [2496 B] Get:147 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-bioc-biocgenerics all 0.34.0-1build1 [639 kB] Get:148 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-bioc-biobase riscv64 2.48.0-1build1 [2227 kB] Get:149 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-bioc-s4vectors riscv64 0.26.1-1build1 [1999 kB] Get:150 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-bioc-iranges riscv64 2.22.2-1build1 [2268 kB] Get:151 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-dbi all 1.1.0-3 [599 kB] Get:152 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-bit riscv64 1.1-15.2-1build1 [224 kB] Get:153 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-bit64 riscv64 0.9-7-3build1 [446 kB] Get:154 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-rlang riscv64 0.4.6-1build1 [1111 kB] Get:155 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-ellipsis riscv64 0.3.1-1build1 [31.4 kB] Get:156 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-digest riscv64 0.6.25-1build1 [176 kB] Get:157 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-glue riscv64 1.4.1-1build1 [133 kB] Get:158 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-vctrs riscv64 0.3.0-2build1 [915 kB] Get:159 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-blob all 1.2.1-2build1 [49.9 kB] Get:160 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-memoise all 1.1.0-3build1 [39.3 kB] Get:161 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] Get:162 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-pkgkitten all 0.1.5-2 [22.6 kB] Get:163 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-rcpp riscv64 1.0.4.6-1build1 [1861 kB] Get:164 http://ftpmaster.internal/ubuntu groovy/universe riscv64 r-cran-bh all 1.66.0-1 [5116 B] Get:165 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] Get:166 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-rsqlite riscv64 2.2.0-1build2 [882 kB] Get:167 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-bioc-annotationdbi all 1.50.0-1build1 [4713 kB] Get:168 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-xml riscv64 3.99-0.3-2build1 [1690 kB] Get:169 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-xtable all 1:1.8-4-2 [689 kB] Get:170 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-bitops riscv64 1.0-6-4build1 [22.4 kB] Get:171 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-rcurl riscv64 1.98-1.2-1build1 [786 kB] Get:172 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-bioc-annotate all 1.66.0+dfsg-1build1 [2105 kB] Get:173 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-formatr all 1.7-2build1 [147 kB] Get:174 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] Get:175 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] Get:176 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] Get:177 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-snow all 1:0.4.3-2 [109 kB] Get:178 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-bioc-biocparallel riscv64 1.22.0-1build1 [1140 kB] Get:179 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-bioc-zlibbioc all 1.34.0+dfsg-1build1 [8960 B] Get:180 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-bioc-xvector riscv64 0.28.0-1 [617 kB] Get:181 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-crayon all 1.3.4-4ubuntu2 [498 kB] Get:182 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-bioc-biostrings riscv64 2.56.0-1 [14.2 MB] Get:183 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-matrixstats riscv64 0.56.0-1build1 [616 kB] Get:184 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-lattice riscv64 0.20-41-1build1 [1119 kB] Get:185 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-matrix riscv64 1.2-18-1build1 [3422 kB] Get:186 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-bioc-delayedarray riscv64 0.14.0+dfsg-2build1 [1734 kB] Get:187 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-bioc-genomeinfodbdata all 1.2.3-1build1 [10.4 MB] Get:188 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groovy-proposed/universe riscv64 r-bioc-keggrest all 1.28.0+dfsg-1build1 [173 kB] Get:205 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-bioc-rtracklayer riscv64 1.48.0-1build1 [5013 kB] Get:206 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-assertthat all 0.2.1-2build1 [56.5 kB] Get:207 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-backports riscv64 1.1.7-1build1 [71.3 kB] Get:208 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-ps riscv64 1.3.3-1build1 [217 kB] Get:209 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-processx riscv64 3.4.2-1build1 [265 kB] Get:210 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-callr all 3.4.3-2build1 [385 kB] Get:211 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-fansi riscv64 0.4.1-1build1 [340 kB] Get:212 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 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riscv64 r-cran-mass riscv64 7.3-51.6-1build1 [1110 kB] Get:230 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-nlme riscv64 3.1.148-1build1 [2216 kB] Get:231 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-mgcv riscv64 1.8-31-1build1 [2686 kB] Get:232 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-labeling all 0.3-4build1 [62.3 kB] Get:233 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-lifecycle all 0.2.0-2build1 [93.3 kB] Get:234 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-munsell all 0.5.0-2build1 [208 kB] Get:235 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-rcolorbrewer all 1.1-2-3 [54.6 kB] Get:236 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-viridislite all 0.3.0-4 [58.9 kB] Get:237 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-scales all 1.1.1-1build1 [486 kB] Get:238 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riscv64 r-cran-r.methodss3 all 1.8.0-2build1 [83.0 kB] Get:247 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-r.oo all 1.23.0-2build1 [954 kB] Get:248 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-r.utils all 2.9.2-2build1 [1384 kB] Get:249 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-readr riscv64 1.3.1-1build2 [700 kB] Get:250 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-stringi riscv64 1.4.6-1build2 [700 kB] Get:251 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-stringr all 1.4.0-2build1 [192 kB] Get:252 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 r-cran-reshape2 riscv64 1.4.4-2build1 [112 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 219 MB in 35s (6211 kB/s) Selecting previously unselected package libbsd0:riscv64. (Reading database ... 9816 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.10.0-1_riscv64.deb ... Unpacking libbsd0:riscv64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2ubuntu3_riscv64.deb ... Unpacking bsdmainutils (11.1.2ubuntu3) ... Selecting previously unselected package libuchardet0:riscv64. Preparing to unpack .../002-libuchardet0_0.0.7-1_riscv64.deb ... Unpacking libuchardet0:riscv64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-5_riscv64.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:riscv64. Preparing to unpack .../004-libpipeline1_1.5.2-2build1_riscv64.deb ... Unpacking libpipeline1:riscv64 (1.5.2-2build1) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.9.1-1_riscv64.deb ... Unpacking man-db (2.9.1-1) ... 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Setting up zip (3.0-11build1) ... Setting up autotools-dev (20180224.1) ... Setting up libpcre2-32-0:riscv64 (10.34-7) ... Setting up libblas3:riscv64 (3.9.0-2) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/riscv64-linux-gnu/libblas.so.3 (libblas.so.3-riscv64-linux-gnu) in auto mode Setting up libswitch-perl (2.17-2) ... Setting up libfreetype6:riscv64 (2.10.1-2) ... Setting up libx11-data (2:1.6.9-2ubuntu1) ... Setting up librtmp1:riscv64 (2.4+20151223.gitfa8646d.1-2build1) ... Setting up libncurses6:riscv64 (6.2-1) ... Setting up libsigsegv2:riscv64 (2.12-2) ... Setting up libfribidi0:riscv64 (1.0.8-2) ... Setting up libpcre32-3:riscv64 (2:8.39-12build1) ... Setting up libtcl8.6:riscv64 (8.6.10+dfsg-1) ... Setting up autopoint (0.19.8.1-10build1) ... Setting up libwebp6:riscv64 (0.6.1-2) ... Setting up pkg-config (0.29.2-1ubuntu1) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up ucf (3.0042) ... Setting up libpcre2-posix2:riscv64 (10.34-7) ... Setting up libk5crypto3:riscv64 (1.17-6ubuntu4) ... Setting up libjpeg-turbo8:riscv64 (2.0.3-0ubuntu1) ... Setting up libsasl2-2:riscv64 (2.1.27+dfsg-2) ... Setting up libgfortran5:riscv64 (10.1.0-3ubuntu1) ... Setting up libroken18-heimdal:riscv64 (7.7.0+dfsg-2) ... Setting up liblzma-dev:riscv64 (5.2.4-1) ... Setting up zlib1g-dev:riscv64 (1:1.2.11.dfsg-2ubuntu1) ... Setting up libuchardet0:riscv64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libharfbuzz0b:riscv64 (2.6.4-1ubuntu4) ... Setting up libthai-data (0.1.28-3) ... Setting up libkrb5-3:riscv64 (1.17-6ubuntu4) ... Setting up libboost-dev:riscv64 (1.71.0.0ubuntu4) ... Setting up libbsd0:riscv64 (0.10.0-1) ... Setting up libelf1:riscv64 (0.176-1.1build1) ... Setting up xdg-utils (1.1.3-2ubuntu1) ... Setting up libblas-dev:riscv64 (3.9.0-2) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/blas/libblas.so to provide /usr/lib/riscv64-linux-gnu/libblas.so (libblas.so-riscv64-linux-gnu) in auto mode Setting up dctrl-tools (2.24-3) ... Setting up libheimbase1-heimdal:riscv64 (7.7.0+dfsg-2) ... Setting up libbz2-dev:riscv64 (1.0.8-3) ... Setting up libjpeg8:riscv64 (8c-2ubuntu8) ... Setting up libfile-stripnondeterminism-perl (1.8.1-1) ... Setting up r-cran-bh (1.66.0-1) ... Setting up libpaper1:riscv64 (1.1.28) ... Creating config file /etc/papersize with new version Setting up libice6:riscv64 (2:1.0.10-0ubuntu1) ... Setting up libjpeg-turbo8-dev:riscv64 (2.0.3-0ubuntu1) ... Setting up libxdmcp6:riscv64 (1:1.1.3-0ubuntu1) ... Setting up liblapack3:riscv64 (3.9.0-2) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/riscv64-linux-gnu/liblapack.so.3 (liblapack.so.3-riscv64-linux-gnu) in auto mode Setting up libncurses-dev:riscv64 (6.2-1) ... Setting up libxcb1:riscv64 (1.14-2) ... Setting up libpcre2-dev:riscv64 (10.34-7) ... Setting up libtool (2.4.6-14) ... Setting up libxcb-render0:riscv64 (1.14-2) ... Setting up libpcre3-dev:riscv64 (2:8.39-12build1) ... Setting up fontconfig-config (2.13.1-2ubuntu3) ... Setting up libicu66:riscv64 (66.1-2ubuntu2) ... Setting up libasn1-8-heimdal:riscv64 (7.7.0+dfsg-2) ... Setting up libpng-dev:riscv64 (1.6.37-2) ... Setting up libgfortran-9-dev:riscv64 (9.3.0-13ubuntu1) ... Setting up m4 (1.4.18-4) ... Setting up libxcb-shm0:riscv64 (1.14-2) ... Setting up libpaper-utils (1.1.28) ... Setting up libreadline-dev:riscv64 (8.0-4) ... Setting up libhcrypto4-heimdal:riscv64 (7.7.0+dfsg-2) ... Setting up libthai0:riscv64 (0.1.28-3) ... Setting up libwind0-heimdal:riscv64 (7.7.0+dfsg-2) ... Setting up bsdmainutils (11.1.2ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up liblapack-dev:riscv64 (3.9.0-2) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/lapack/liblapack.so to provide /usr/lib/riscv64-linux-gnu/liblapack.so (liblapack.so-riscv64-linux-gnu) in auto mode Setting up libgssapi-krb5-2:riscv64 (1.17-6ubuntu4) ... Setting up icu-devtools (66.1-2ubuntu2) ... Setting up libssh-4:riscv64 (0.9.4-1ubuntu1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.8.1-1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up libncurses5-dev:riscv64 (6.2-1) ... Setting up libx11-6:riscv64 (2:1.6.9-2ubuntu1) ... Setting up libtiff5:riscv64 (4.1.0+git191117-2build1) ... Setting up libfontconfig1:riscv64 (2.13.1-2ubuntu3) ... Setting up libjpeg8-dev:riscv64 (8c-2ubuntu8) ... Setting up libsm6:riscv64 (2:1.2.3-1) ... Setting up libicu-dev:riscv64 (66.1-2ubuntu2) ... Setting up libxml2:riscv64 (2.9.10+dfsg-5) ... Setting up libxmuu1:riscv64 (2:1.1.3-0ubuntu1) ... Setting up automake (1:1.16.2-1ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up fontconfig (2.13.1-2ubuntu3) ... Regenerating fonts cache... done. Setting up libxrender1:riscv64 (1:0.9.10-1) ... Setting up gfortran-9 (9.3.0-13ubuntu1) ... Setting up libhx509-5-heimdal:riscv64 (7.7.0+dfsg-2) ... Setting up libpango-1.0-0:riscv64 (1.44.7-2ubuntu4) ... Setting up libjpeg-dev:riscv64 (8c-2ubuntu8) ... Setting up libxext6:riscv64 (2:1.3.4-0ubuntu1) ... Setting up man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:9.3.0-1ubuntu2) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:riscv64 (1.16.0-4ubuntu1) ... Setting up libcroco3:riscv64 (0.6.13-1) ... Setting up libxt6:riscv64 (1:1.1.5-1) ... Setting up xauth (1:1.1-0ubuntu1) ... Setting up libxss1:riscv64 (1:1.2.3-1) ... Setting up libpangoft2-1.0-0:riscv64 (1.44.7-2ubuntu4) ... Setting up libpangocairo-1.0-0:riscv64 (1.44.7-2ubuntu4) ... Setting up libkrb5-26-heimdal:riscv64 (7.7.0+dfsg-2) ... Setting up libxft2:riscv64 (2.3.3-0ubuntu1) ... Setting up gettext (0.19.8.1-10build1) ... Setting up libtk8.6:riscv64 (8.6.10-1) ... Setting up libheimntlm0-heimdal:riscv64 (7.7.0+dfsg-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libgssapi3-heimdal:riscv64 (7.7.0+dfsg-2) ... Setting up po-debconf (1.0.21) ... Setting up libldap-2.4-2:riscv64 (2.4.49+dfsg-2ubuntu2) ... Setting up libcurl4:riscv64 (7.68.0-1ubuntu2) ... Setting up r-base-core (4.0.0.20200528-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.3.4-4ubuntu2) ... Setting up r-cran-gtable (0.3.0+dfsg-2build1) ... Setting up r-cran-labeling (0.3-4build1) ... Setting up r-cran-futile.options (1.0.1-3build1) ... Setting up r-cran-lattice (0.20-41-1build1) ... Setting up r-cran-ps (1.3.3-1build1) ... Setting up r-cran-nlme (3.1.148-1build1) ... Setting up r-cran-farver (2.0.3-1build2) ... Setting up r-cran-formatr (1.7-2build1) ... Setting up r-cran-xml (3.99-0.3-2build1) ... Setting up r-cran-viridislite (0.3.0-4) ... Setting up r-cran-clipr (0.7.0-2build1) ... Setting up r-cran-r6 (2.4.1-2build1) ... Setting up r-cran-pkgkitten (0.1.5-2) ... Setting up r-cran-magrittr (1.5-6build1) ... Setting up r-bioc-genomeinfodbdata (1.2.3-1build1) ... Setting up r-cran-littler (0.3.9-1build1) ... 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Setting up r-cran-plyr (1.8.6-2build1) ... Setting up r-cran-rcolorbrewer (1.1-2-3) ... Setting up r-bioc-s4vectors (0.26.1-1build1) ... Setting up r-cran-futile.logger (1.4.3-4build1) ... Setting up r-cran-memoise (1.1.0-3build1) ... Setting up r-cran-matrix (1.2-18-1build1) ... Setting up r-cran-mgcv (1.8-31-1build1) ... Setting up r-cran-powerlaw (0.70.6-2build1) ... Setting up r-bioc-iranges (2.22.2-1build1) ... Setting up r-cran-rcurl (1.98-1.2-1build1) ... Setting up r-bioc-delayedarray (0.14.0+dfsg-2build1) ... Setting up r-cran-ellipsis (0.3.1-1build1) ... Setting up r-cran-openssl (1.4.1+dfsg-2ubuntu2) ... Setting up r-cran-stringr (1.4.0-2build1) ... Setting up r-bioc-biocparallel (1.22.0-1build1) ... Setting up r-cran-callr (3.4.3-2build1) ... Setting up r-bioc-rhtslib (1.20.0+dfsg-1build1) ... Setting up r-cran-desc (1.2.0-3build1) ... Setting up r-cran-munsell (0.5.0-2build1) ... Setting up r-cran-r.oo (1.23.0-2build1) ... Setting up r-cran-reshape2 (1.4.4-2build1) ... Setting up r-bioc-genomeinfodb (1.24.0-1build1) ... Setting up r-cran-httr (1.4.1-1ubuntu2) ... Setting up r-cran-scales (1.1.1-1build1) ... Setting up r-bioc-xvector (0.28.0-1) ... Setting up r-cran-pkgbuild (1.0.8-2build1) ... Setting up r-cran-vctrs (0.3.0-2build1) ... Setting up r-cran-pillar (1.4.4-2build1) ... Setting up r-cran-pkgload (1.0.2-2build1) ... Setting up r-cran-r.utils (2.9.2-2build1) ... Setting up r-bioc-genomicranges (1.40.0+dfsg-1build1) ... Setting up r-bioc-biostrings (2.56.0-1) ... Setting up r-cran-tibble (3.0.1-1build1) ... Setting up r-cran-testthat (2.3.2-2build1) ... Setting up r-cran-isoband (0.2.1-1build1) ... Setting up r-cran-hms (0.5.3-2build1) ... Setting up r-cran-blob (1.2.1-2build1) ... Setting up r-bioc-rsamtools (2.4.0-1build1) ... Setting up r-cran-rsqlite (2.2.0-1build2) ... Setting up r-bioc-summarizedexperiment (1.18.1+dfsg-1) ... Setting up r-bioc-keggrest (1.28.0+dfsg-1build1) ... Setting up r-cran-ggplot2 (3.3.0+dfsg-2build1) ... Setting up r-bioc-annotationdbi (1.50.0-1build1) ... Setting up r-bioc-go.db (3.11.1-1) ... Setting up r-bioc-annotate (1.66.0+dfsg-1build1) ... Setting up r-cran-readr (1.3.1-1build2) ... Setting up r-bioc-genomicalignments (1.24.0-1) ... Setting up r-bioc-rtracklayer (1.48.0-1build1) ... Setting up dh-autoreconf (19) ... Setting up debhelper (13.1ubuntu1) ... Setting up dh-r (20200314) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.31-0ubuntu9) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-21-generic #25-Ubuntu SMP Tue Mar 31 01:57:06 UTC 2020 riscv64 (riscv64) Toolchain package versions: binutils_2.34-7ubuntu1 dpkg-dev_1.19.7ubuntu3 g++-9_9.3.0-13ubuntu1 gcc-9_9.3.0-13ubuntu1 libc6-dev_2.31-0ubuntu9 libstdc++-9-dev_9.3.0-13ubuntu1 libstdc++6_10.1.0-3ubuntu1 linux-libc-dev_5.4.0-24.28 Package versions: adduser_3.118ubuntu2 advancecomp_2.1-2.1build1 apt_2.1.5 autoconf_2.69-11.1 automake_1:1.16.2-1ubuntu1 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu7 base-passwd_3.5.47 bash_5.0-6ubuntu1 binutils_2.34-7ubuntu1 binutils-common_2.34-7ubuntu1 binutils-riscv64-linux-gnu_2.34-7ubuntu1 bsdmainutils_11.1.2ubuntu3 bsdutils_1:2.34-0.1ubuntu9 build-essential_12.8ubuntu1 bzip2_1.0.8-3 ca-certificates_20190110ubuntu1 coreutils_8.30-3ubuntu2 cpp_4:9.3.0-1ubuntu2 cpp-9_9.3.0-13ubuntu1 dash_0.5.10.2-7 dctrl-tools_2.24-3 debconf_1.5.74 debhelper_13.1ubuntu1 debianutils_4.11 dh-autoreconf_19 dh-r_20200314 dh-strip-nondeterminism_1.8.1-1 diffutils_1:3.7-3 dpkg_1.19.7ubuntu3 dpkg-dev_1.19.7ubuntu3 dwz_0.13-5 e2fsprogs_1.45.6-1ubuntu1 fakeroot_1.24-1 file_1:5.38-5 findutils_4.7.0-1ubuntu1 fontconfig_2.13.1-2ubuntu3 fontconfig-config_2.13.1-2ubuntu3 fonts-dejavu-core_2.37-2 g++_4:9.3.0-1ubuntu2 g++-9_9.3.0-13ubuntu1 gcc_4:9.3.0-1ubuntu2 gcc-10-base_10.1.0-3ubuntu1 gcc-8-base_8.4.0-4ubuntu1 gcc-9_9.3.0-13ubuntu1 gcc-9-base_9.3.0-13ubuntu1 gettext_0.19.8.1-10build1 gettext-base_0.19.8.1-10build1 gfortran_4:9.3.0-1ubuntu2 gfortran-9_9.3.0-13ubuntu1 gpg_2.2.20-1ubuntu1 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x11-common_1:7.7+19ubuntu14 xauth_1:1.1-0ubuntu1 xdg-utils_1.1.3-2ubuntu1 xz-utils_5.2.4-1 zip_3.0-11build1 zlib1g_1:1.2.11.dfsg-2ubuntu1 zlib1g-dev_1:1.2.11.dfsg-2ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-cner Binary: r-bioc-cner Architecture: any Version: 1.24.0+dfsg-1build1 Maintainer: Ubuntu Developers Uploaders: Andreas Tille Homepage: https://bioconductor.org/packages/CNEr/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-cner Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-cner.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 12), dh-r (>= 20180527), r-base-dev, r-bioc-biostrings (>= 2.33.4), r-cran-dbi (>= 0.7), r-cran-rsqlite, r-bioc-genomeinfodb (>= 1.1.3), r-bioc-genomicranges (>= 1.23.16), r-bioc-rtracklayer (>= 1.25.5), r-bioc-xvector (>= 0.5.4), r-bioc-genomicalignments (>= 1.1.9), r-bioc-s4vectors (>= 0.13.13), r-bioc-iranges (>= 2.5.27), r-cran-readr, r-bioc-biocgenerics, r-cran-reshape2 (>= 1.4.1), r-cran-ggplot2 (>= 2.1.0), r-cran-powerlaw, r-bioc-annotate, r-bioc-go.db, r-cran-r.utils, r-bioc-keggrest Package-List: r-bioc-cner deb gnu-r optional arch=any Checksums-Sha1: a017dccd8e6f571fd79fdaba24a7b4a2c8050165 7747088 r-bioc-cner_1.24.0+dfsg.orig.tar.xz dba73aa612a204daaec6b0beb8e2225c21cdbb25 3956 r-bioc-cner_1.24.0+dfsg-1build1.debian.tar.xz Checksums-Sha256: 1f980cade988a2368a181c0665932261a945b16d251e41300696c6f739e35854 7747088 r-bioc-cner_1.24.0+dfsg.orig.tar.xz 4990aeb477d37195d7eb6847ee4738cee98a1ada2a4798395b0b35446b7b1e12 3956 r-bioc-cner_1.24.0+dfsg-1build1.debian.tar.xz Files: cc0088bdf89a13fddbc7078d6e94ddb3 7747088 r-bioc-cner_1.24.0+dfsg.orig.tar.xz 23d8b58d5526359670fc110552298af9 3956 r-bioc-cner_1.24.0+dfsg-1build1.debian.tar.xz 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AC483F68DE728F43F2202FCA568D30F321B2133D gpgv: issuer "steve.langasek@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-bioc-cner_1.24.0+dfsg-1build1.dsc dpkg-source: info: extracting r-bioc-cner in /<> dpkg-source: info: unpacking r-bioc-cner_1.24.0+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-cner_1.24.0+dfsg-1build1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Fix_autopkgtest.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=8 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-19385925 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-19385925 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-19385925 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package r-bioc-cner dpkg-buildpackage: info: source version 1.24.0+dfsg-1build1 dpkg-buildpackage: info: source distribution groovy dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary-arch dh binary-arch --buildsystem R dh_update_autotools_config -a -O--buildsystem=R dh_autoreconf -a -O--buildsystem=R dh_auto_configure -a -O--buildsystem=R dh_auto_build -a -O--buildsystem=R dh_auto_test -a -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=R dh_prep -a -O--buildsystem=R dh_auto_install -a -O--buildsystem=R I: R Package: CNEr Version: 1.24.0 I: Building using R version 4.0.0.20200528-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Sun, 31 May 2020 06:06:23 +0000 mkdir -p /<>/r-bioc-cner-1.24.0\+dfsg/debian/r-bioc-cner/usr/lib/R/site-library R CMD INSTALL -l /<>/r-bioc-cner-1.24.0\+dfsg/debian/r-bioc-cner/usr/lib/R/site-library --clean . "--built-timestamp='Sun, 31 May 2020 06:06:23 +0000'" * installing *source* package ‘CNEr’ ... ** using staged installation ** libs make[1]: Entering directory '/<>/src' gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c S4Vectors_stubs.c -o S4Vectors_stubs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c IRanges_stubs.c -o IRanges_stubs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XVector_stubs.c -o XVector_stubs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_CNEr.c -o R_init_CNEr.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c io.c -o io.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ceScan.c -o ceScan.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/axt.c -o ucsc/axt.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/base64.c -o ucsc/base64.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/binRange.c -o ucsc/binRange.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/bits.c -o ucsc/bits.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/chain.c -o ucsc/chain.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/_cheapcgi.c -o ucsc/_cheapcgi.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/cirTree.c -o ucsc/cirTree.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/common.c -o ucsc/common.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/dlist.c -o ucsc/dlist.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/dnaseq.c -o ucsc/dnaseq.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/dnautil.c -o ucsc/dnautil.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/dystring.c -o ucsc/dystring.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/errabort.c -o ucsc/errabort.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/hash.c -o ucsc/hash.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/https.c -o ucsc/https.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/intExp.c -o ucsc/intExp.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/kxTok.c -o ucsc/kxTok.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/linefile.c -o ucsc/linefile.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/localmem.c -o ucsc/localmem.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/memalloc.c -o ucsc/memalloc.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/obscure.c -o ucsc/obscure.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/options.c -o ucsc/options.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/pipeline.c -o ucsc/pipeline.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/_portimpl.c -o ucsc/_portimpl.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/sqlList.c -o ucsc/sqlList.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/sqlNum.c -o ucsc/sqlNum.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/verbose.c -o ucsc/verbose.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/os.c -o ucsc/os.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -g -fpic -g -O2 -fdebug-prefix-map=/build/r-base-nm11up/r-base-4.0.0.20200528=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/wildcmp.c -o ucsc/wildcmp.o gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o CNEr.so S4Vectors_stubs.o IRanges_stubs.o XVector_stubs.o R_init_CNEr.o utils.o io.o ceScan.o ucsc/axt.o ucsc/base64.o ucsc/binRange.o ucsc/bits.o ucsc/chain.o ucsc/_cheapcgi.o ucsc/cirTree.o ucsc/common.o ucsc/dlist.o ucsc/dnaseq.o ucsc/dnautil.o ucsc/dystring.o ucsc/errabort.o ucsc/hash.o ucsc/https.o ucsc/intExp.o ucsc/kxTok.o ucsc/linefile.o ucsc/localmem.o ucsc/memalloc.o ucsc/obscure.o ucsc/options.o ucsc/pipeline.o ucsc/_portimpl.o ucsc/sqlList.o ucsc/sqlNum.o ucsc/verbose.o ucsc/os.o ucsc/wildcmp.o -lz -L/usr/lib/R/lib -lR make[1]: Leaving directory '/<>/src' make[1]: Entering directory '/<>/src' make[1]: Leaving directory '/<>/src' installing to /<>/debian/r-bioc-cner/usr/lib/R/site-library/00LOCK-r-bioc-cner-1.24.0+dfsg/00new/CNEr/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CNEr) rm -f /<>/r-bioc-cner-1.24.0\+dfsg/debian/r-bioc-cner/usr/lib/R/site-library/CNEr/LICENSE Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 292. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 293. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 296. W: Ignoring specified R dependency: R (>= 3.4) I: Using r-bioc-gviz for Suggests:Gviz (>= 1.7.4) W: Cannot find a debian package for Suggests:BiocStyle I: Using r-cran-knitr for Suggests:knitr I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-cran-testthat for Suggests:testthat W: Cannot find a debian package for Suggests:BSgenome.Drerio.UCSC.danRer10 W: Cannot find a debian package for Suggests:BSgenome.Hsapiens.UCSC.hg38 W: Cannot find a debian package for Suggests:TxDb.Drerio.UCSC.danRer10.refGene W: Cannot find a debian package for Suggests:BSgenome.Hsapiens.UCSC.hg19 W: Cannot find a debian package for Suggests:BSgenome.Ggallus.UCSC.galGal3 I: Using r-bioc-biostrings for Imports:Biostrings (>= 2.33.4) I: Using r-cran-dbi for Imports:DBI (>= 0.7) I: Using r-cran-rsqlite for Imports:RSQLite (>= 0.11.4) I: Using r-bioc-genomeinfodb for Imports:GenomeInfoDb (>= 1.1.3) I: Using r-bioc-genomicranges for Imports:GenomicRanges (>= 1.23.16) I: Using r-bioc-rtracklayer for Imports:rtracklayer (>= 1.25.5) I: Using r-bioc-xvector for Imports:XVector (>= 0.5.4) I: Using r-bioc-genomicalignments for Imports:GenomicAlignments (>= 1.1.9) I: Using r-bioc-s4vectors for Imports:S4Vectors (>= 0.13.13) I: Using r-bioc-iranges for Imports:IRanges (>= 2.5.27) I: Using r-cran-readr for Imports:readr (>= 0.2.2) I: Using r-bioc-biocgenerics for Imports:BiocGenerics I: Using r-cran-reshape2 for Imports:reshape2 (>= 1.4.1) I: Using r-cran-ggplot2 for Imports:ggplot2 (>= 2.1.0) I: Using r-cran-powerlaw for Imports:poweRlaw (>= 0.60.3) I: Using r-bioc-annotate for Imports:annotate (>= 1.50.0) I: Using r-bioc-go.db for Imports:GO.db (>= 3.3.0) I: Using r-cran-r.utils for Imports:R.utils (>= 2.3.0) I: Using r-bioc-keggrest for Imports:KEGGREST (>= 1.14.0) I: Using r-bioc-s4vectors for LinkingTo:S4Vectors I: Using r-bioc-iranges for LinkingTo:IRanges I: Using r-bioc-xvector for LinkingTo:XVector I: BioConductor API version: r-api-bioc-3.11 dh_installdocs -a -O--buildsystem=R dh_installchangelogs -a -O--buildsystem=R dh_installinit -a -O--buildsystem=R dh_installsystemduser -a -O--buildsystem=R dh_perl -a -O--buildsystem=R dh_link -a -O--buildsystem=R dh_strip_nondeterminism -a -O--buildsystem=R dh_compress -a -O--buildsystem=R debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms find debian -name "*.Rmd" -executable -exec chmod -x \{\} \; make[1]: Leaving directory '/<>' dh_missing -a -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -a -O--buildsystem=R dh_gencontrol -a -O--buildsystem=R dh_md5sums -a -O--buildsystem=R dh_builddeb -a -O--buildsystem=R INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing r-bioc-cner (in debian/r-bioc-cner); do_strip: , oemstrip: pkgstriptranslations: processing r-bioc-cner-dbgsym (in debian/.debhelper/r-bioc-cner/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/r-bioc-cner/DEBIAN/control, package r-bioc-cner, directory debian/r-bioc-cner pkgstripfiles: processing control file: debian/.debhelper/r-bioc-cner/dbgsym-root/DEBIAN/control, package r-bioc-cner-dbgsym, directory debian/.debhelper/r-bioc-cner/dbgsym-root dpkg-deb: building package 'r-bioc-cner-dbgsym' in 'debian/.debhelper/scratch-space/build-r-bioc-cner/r-bioc-cner-dbgsym_1.24.0+dfsg-1build1_riscv64.deb'. pkgstripfiles: Running PNG optimization (using 8 cpus) for package r-bioc-cner ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-bioc-cner' in '../r-bioc-cner_1.24.0+dfsg-1build1_riscv64.deb'. Renaming r-bioc-cner-dbgsym_1.24.0+dfsg-1build1_riscv64.deb to r-bioc-cner-dbgsym_1.24.0+dfsg-1build1_riscv64.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../r-bioc-cner_1.24.0+dfsg-1build1_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-05-31T23:21:15Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-bioc-cner_1.24.0+dfsg-1build1_riscv64.changes: ------------------------------------------------ Format: 1.8 Date: Sun, 31 May 2020 06:06:23 +0000 Source: r-bioc-cner Binary: r-bioc-cner Architecture: riscv64 Version: 1.24.0+dfsg-1build1 Distribution: groovy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Steve Langasek Description: r-bioc-cner - CNE Detection and Visualization Changes: r-bioc-cner (1.24.0+dfsg-1build1) groovy; urgency=medium . * No-change rebuild against r-api-4.0 Checksums-Sha1: a6240dba47ce553b841b2bff526a2e5bc3400dae 286484 r-bioc-cner-dbgsym_1.24.0+dfsg-1build1_riscv64.ddeb 03925716862344f5c8d0e99ec0710c58c2d8b2bb 12690 r-bioc-cner_1.24.0+dfsg-1build1_riscv64.buildinfo ccd1bebd59213696bec20fd38be70e5e9a492b59 8376804 r-bioc-cner_1.24.0+dfsg-1build1_riscv64.deb Checksums-Sha256: a0edcc9ceea0ad2b7c476f5aff9e544e398fb0f59f22bfebe3e44d7b88436119 286484 r-bioc-cner-dbgsym_1.24.0+dfsg-1build1_riscv64.ddeb c9434202d416fa405eed5df9233d3517060d202f49a59617f17ae3f62b7c7741 12690 r-bioc-cner_1.24.0+dfsg-1build1_riscv64.buildinfo 1c1bd267a10344d7e0e8ee72e417e83139a191b71242d0b3e51d735843db5cc1 8376804 r-bioc-cner_1.24.0+dfsg-1build1_riscv64.deb Files: a981a2e51cf6e7a1ccd090b5ef25076d 286484 debug optional r-bioc-cner-dbgsym_1.24.0+dfsg-1build1_riscv64.ddeb 531f07fcce4d5cb1c0cbc20ec923cf81 12690 gnu-r optional r-bioc-cner_1.24.0+dfsg-1build1_riscv64.buildinfo 197dd3e1189f5bcd6d4f990ac9370477 8376804 gnu-r optional r-bioc-cner_1.24.0+dfsg-1build1_riscv64.deb Original-Maintainer: Debian R Packages Maintainers /<>/r-bioc-cner_1.24.0+dfsg-1build1_riscv64.changes.new could not be renamed to /<>/r-bioc-cner_1.24.0+dfsg-1build1_riscv64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: r-bioc-cner Binary: r-bioc-cner Architecture: riscv64 Version: 1.24.0+dfsg-1build1 Checksums-Md5: a981a2e51cf6e7a1ccd090b5ef25076d 286484 r-bioc-cner-dbgsym_1.24.0+dfsg-1build1_riscv64.ddeb 197dd3e1189f5bcd6d4f990ac9370477 8376804 r-bioc-cner_1.24.0+dfsg-1build1_riscv64.deb Checksums-Sha1: a6240dba47ce553b841b2bff526a2e5bc3400dae 286484 r-bioc-cner-dbgsym_1.24.0+dfsg-1build1_riscv64.ddeb ccd1bebd59213696bec20fd38be70e5e9a492b59 8376804 r-bioc-cner_1.24.0+dfsg-1build1_riscv64.deb Checksums-Sha256: a0edcc9ceea0ad2b7c476f5aff9e544e398fb0f59f22bfebe3e44d7b88436119 286484 r-bioc-cner-dbgsym_1.24.0+dfsg-1build1_riscv64.ddeb 1c1bd267a10344d7e0e8ee72e417e83139a191b71242d0b3e51d735843db5cc1 8376804 r-bioc-cner_1.24.0+dfsg-1build1_riscv64.deb Build-Origin: Ubuntu Build-Architecture: riscv64 Build-Date: Sun, 31 May 2020 23:21:06 +0000 Build-Path: /<> Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.2-1ubuntu1), autopoint (= 0.19.8.1-10build1), autotools-dev (= 20180224.1), base-files (= 11ubuntu7), base-passwd (= 3.5.47), bash (= 5.0-6ubuntu1), binutils (= 2.34-7ubuntu1), binutils-common (= 2.34-7ubuntu1), binutils-riscv64-linux-gnu (= 2.34-7ubuntu1), bsdmainutils (= 11.1.2ubuntu3), bsdutils (= 1:2.34-0.1ubuntu9), build-essential (= 12.8ubuntu1), bzip2 (= 1.0.8-3), ca-certificates (= 20190110ubuntu1), coreutils (= 8.30-3ubuntu2), cpp (= 4:9.3.0-1ubuntu2), cpp-9 (= 9.3.0-13ubuntu1), dash (= 0.5.10.2-7), dctrl-tools (= 2.24-3), debconf (= 1.5.74), debhelper (= 13.1ubuntu1), debianutils (= 4.11), dh-autoreconf (= 19), dh-r (= 20200314), dh-strip-nondeterminism (= 1.8.1-1), diffutils (= 1:3.7-3), dpkg (= 1.19.7ubuntu3), dpkg-dev (= 1.19.7ubuntu3), dwz (= 0.13-5), file (= 1:5.38-5), findutils (= 4.7.0-1ubuntu1), fontconfig (= 2.13.1-2ubuntu3), fontconfig-config (= 2.13.1-2ubuntu3), fonts-dejavu-core (= 2.37-2), g++ (= 4:9.3.0-1ubuntu2), g++-9 (= 9.3.0-13ubuntu1), gcc (= 4:9.3.0-1ubuntu2), gcc-10-base (= 10.1.0-3ubuntu1), gcc-9 (= 9.3.0-13ubuntu1), gcc-9-base (= 9.3.0-13ubuntu1), gettext (= 0.19.8.1-10build1), gettext-base (= 0.19.8.1-10build1), gfortran (= 4:9.3.0-1ubuntu2), gfortran-9 (= 9.3.0-13ubuntu1), grep (= 3.4-1), groff-base (= 1.22.4-5), gzip (= 1.10-2ubuntu1), hostname (= 3.23), icu-devtools (= 66.1-2ubuntu2), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-8), libarchive-zip-perl (= 1.68-1), libasn1-8-heimdal (= 7.7.0+dfsg-2), libatomic1 (= 10.1.0-3ubuntu1), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-2ubuntu6), libaudit1 (= 1:2.8.5-2ubuntu6), libbinutils (= 2.34-7ubuntu1), libblas-dev (= 3.9.0-2), libblas3 (= 3.9.0-2), libblkid1 (= 2.34-0.1ubuntu9), libboost-dev (= 1.71.0.0ubuntu4), libboost1.71-dev (= 1.71.0-6ubuntu8), libbrotli1 (= 1.0.7-6.1), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-3), libbz2-dev (= 1.0.8-3), libc-bin (= 2.31-0ubuntu9), libc-dev-bin (= 2.31-0ubuntu9), libc6 (= 2.31-0ubuntu9), libc6-dev (= 2.31-0ubuntu9), libcairo2 (= 1.16.0-4ubuntu1), libcap-ng0 (= 0.7.9-2.1build1), libcc1-0 (= 10.1.0-3ubuntu1), libcom-err2 (= 1.45.6-1ubuntu1), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.15-1ubuntu1), libcrypt1 (= 1:4.4.15-1ubuntu1), libctf-nobfd0 (= 2.34-7ubuntu1), libctf0 (= 2.34-7ubuntu1), libcurl4 (= 7.68.0-1ubuntu2), libdatrie1 (= 0.2.12-3), libdb5.3 (= 5.3.28+dfsg1-0.6ubuntu2), libdebconfclient0 (= 0.251ubuntu1), libdebhelper-perl (= 13.1ubuntu1), libdpkg-perl (= 1.19.7ubuntu3), libelf1 (= 0.176-1.1build1), libexpat1 (= 2.2.9-1build1), libffi7 (= 3.3-4), libfile-stripnondeterminism-perl (= 1.8.1-1), libfile-which-perl (= 1.23-1), libfontconfig1 (= 2.13.1-2ubuntu3), libfreetype6 (= 2.10.1-2), libfribidi0 (= 1.0.8-2), libgcc-9-dev (= 9.3.0-13ubuntu1), libgcc-s1 (= 10.1.0-3ubuntu1), libgcrypt20 (= 1.8.5-5ubuntu1), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libgfortran-9-dev (= 9.3.0-13ubuntu1), libgfortran5 (= 10.1.0-3ubuntu1), libglib2.0-0 (= 2.64.3-1), libgmp10 (= 2:6.2.0+dfsg-4), libgnutls30 (= 3.6.13-2ubuntu1), libgomp1 (= 10.1.0-3ubuntu1), libgpg-error0 (= 1.37-1), libgraphite2-3 (= 1.3.14-1), libgssapi-krb5-2 (= 1.17-6ubuntu4), libgssapi3-heimdal (= 7.7.0+dfsg-2), libharfbuzz0b (= 2.6.4-1ubuntu4), libhcrypto4-heimdal (= 7.7.0+dfsg-2), libheimbase1-heimdal (= 7.7.0+dfsg-2), libheimntlm0-heimdal (= 7.7.0+dfsg-2), libhogweed5 (= 3.5.1+really3.5.1-2), libhx509-5-heimdal (= 7.7.0+dfsg-2), libice6 (= 2:1.0.10-0ubuntu1), libicu-dev (= 66.1-2ubuntu2), libicu66 (= 66.1-2ubuntu2), libidn2-0 (= 2.3.0-1), libisl22 (= 0.22.1-1), libjbig0 (= 2.1-3.1build1), libjpeg-dev (= 8c-2ubuntu8), libjpeg-turbo8 (= 2.0.3-0ubuntu1), libjpeg-turbo8-dev (= 2.0.3-0ubuntu1), libjpeg8 (= 8c-2ubuntu8), libjpeg8-dev (= 8c-2ubuntu8), libk5crypto3 (= 1.17-6ubuntu4), libkeyutils1 (= 1.6.1-2ubuntu1), libkrb5-26-heimdal (= 7.7.0+dfsg-2), libkrb5-3 (= 1.17-6ubuntu4), libkrb5support0 (= 1.17-6ubuntu4), liblapack-dev (= 3.9.0-2), liblapack3 (= 3.9.0-2), libldap-2.4-2 (= 2.4.49+dfsg-2ubuntu2), libldap-common (= 2.4.49+dfsg-2ubuntu2), liblz4-1 (= 1.9.2-2), liblzma-dev (= 5.2.4-1), liblzma5 (= 5.2.4-1), libmagic-mgc (= 1:5.38-5), libmagic1 (= 1:5.38-5), libmount1 (= 2.34-0.1ubuntu9), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libncurses-dev (= 6.2-1), libncurses5-dev (= 6.2-1), libncurses6 (= 6.2-1), libncursesw6 (= 6.2-1), libnettle7 (= 3.5.1+really3.5.1-2), libnghttp2-14 (= 1.40.0-1build1), libp11-kit0 (= 0.23.20-1build1), libpam-modules (= 1.3.1-5ubuntu4), libpam-modules-bin (= 1.3.1-5ubuntu4), libpam-runtime (= 1.3.1-5ubuntu4), libpam0g (= 1.3.1-5ubuntu4), libpango-1.0-0 (= 1.44.7-2ubuntu4), libpangocairo-1.0-0 (= 1.44.7-2ubuntu4), libpangoft2-1.0-0 (= 1.44.7-2ubuntu4), libpaper-utils (= 1.1.28), libpaper1 (= 1.1.28), libpcre16-3 (= 2:8.39-12build1), libpcre2-16-0 (= 10.34-7), libpcre2-32-0 (= 10.34-7), libpcre2-8-0 (= 10.34-7), libpcre2-dev (= 10.34-7), libpcre2-posix2 (= 10.34-7), libpcre3 (= 2:8.39-12build1), libpcre3-dev (= 2:8.39-12build1), libpcre32-3 (= 2:8.39-12build1), libpcrecpp0v5 (= 2:8.39-12build1), libperl5.30 (= 5.30.2-1), libpipeline1 (= 1.5.2-2build1), libpixman-1-0 (= 0.38.4-0ubuntu1), libpng-dev (= 1.6.37-2), libpng16-16 (= 1.6.37-2), libpsl5 (= 0.21.0-1ubuntu1), libreadline-dev (= 8.0-4), libreadline8 (= 8.0-4), libroken18-heimdal (= 7.7.0+dfsg-2), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build1), libsasl2-2 (= 2.1.27+dfsg-2), libsasl2-modules-db (= 2.1.27+dfsg-2), libselinux1 (= 3.0-1build2), libsigsegv2 (= 2.12-2), libsm6 (= 2:1.2.3-1), libsmartcols1 (= 2.34-0.1ubuntu9), libsqlite3-0 (= 3.32.1-1), libssh-4 (= 0.9.4-1ubuntu1), libssl1.1 (= 1.1.1f-1ubuntu2), libstdc++-9-dev (= 9.3.0-13ubuntu1), libstdc++6 (= 10.1.0-3ubuntu1), libsub-override-perl (= 0.09-2), libswitch-perl (= 2.17-2), libsystemd0 (= 245.5-3ubuntu1), libtasn1-6 (= 4.16.0-2), libtcl8.6 (= 8.6.10+dfsg-1), libthai-data (= 0.1.28-3), libthai0 (= 0.1.28-3), libtiff5 (= 4.1.0+git191117-2build1), libtinfo6 (= 6.2-1), libtk8.6 (= 8.6.10-1), libtool (= 2.4.6-14), libuchardet0 (= 0.0.7-1), libudev1 (= 245.5-3ubuntu1), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1ubuntu9), libwebp6 (= 0.6.1-2), libwind0-heimdal (= 7.7.0+dfsg-2), libx11-6 (= 2:1.6.9-2ubuntu1), libx11-data (= 2:1.6.9-2ubuntu1), libxau6 (= 1:1.0.9-0ubuntu1), libxcb-render0 (= 1.14-2), libxcb-shm0 (= 1.14-2), libxcb1 (= 1.14-2), libxdmcp6 (= 1:1.1.3-0ubuntu1), libxext6 (= 2:1.3.4-0ubuntu1), libxft2 (= 2.3.3-0ubuntu1), libxml2 (= 2.9.10+dfsg-5), libxmuu1 (= 2:1.1.3-0ubuntu1), libxrender1 (= 1:0.9.10-1), libxss1 (= 1:1.2.3-1), libxt6 (= 1:1.1.5-1), libzstd1 (= 1.4.4+dfsg-3), linux-libc-dev (= 5.4.0-24.28), littler (= 0.3.9-1build1), login (= 1:4.8.1-1ubuntu5), lsb-base (= 11.1.0ubuntu2), m4 (= 1.4.18-4), make (= 4.3-1), man-db (= 2.9.1-1), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2-1), ncurses-bin (= 6.2-1), openssl (= 1.1.1f-1ubuntu2), patch (= 2.7.6-6), perl (= 5.30.2-1), perl-base (= 5.30.2-1), perl-modules-5.30 (= 5.30.2-1), pkg-config (= 0.29.2-1ubuntu1), po-debconf (= 1.0.21), r-base-core (= 4.0.0.20200528-1), r-base-dev (= 4.0.0.20200528-1), r-bioc-annotate (= 1.66.0+dfsg-1build1), r-bioc-annotationdbi (= 1.50.0-1build1), r-bioc-biobase (= 2.48.0-1build1), r-bioc-biocgenerics (= 0.34.0-1build1), r-bioc-biocparallel (= 1.22.0-1build1), r-bioc-biostrings (= 2.56.0-1), r-bioc-delayedarray (= 0.14.0+dfsg-2build1), r-bioc-genomeinfodb (= 1.24.0-1build1), r-bioc-genomeinfodbdata (= 1.2.3-1build1), r-bioc-genomicalignments (= 1.24.0-1), r-bioc-genomicranges (= 1.40.0+dfsg-1build1), r-bioc-go.db (= 3.11.1-1), r-bioc-iranges (= 2.22.2-1build1), r-bioc-keggrest (= 1.28.0+dfsg-1build1), r-bioc-rhtslib (= 1.20.0+dfsg-1build1), r-bioc-rsamtools (= 2.4.0-1build1), r-bioc-rtracklayer (= 1.48.0-1build1), r-bioc-s4vectors (= 0.26.1-1build1), r-bioc-summarizedexperiment (= 1.18.1+dfsg-1), r-bioc-xvector (= 0.28.0-1), r-bioc-zlibbioc (= 1.34.0+dfsg-1build1), r-cran-askpass (= 1.1-1build1), r-cran-assertthat (= 0.2.1-2build1), r-cran-backports (= 1.1.7-1build1), r-cran-bh (= 1.66.0-1), r-cran-bit (= 1.1-15.2-1build1), r-cran-bit64 (= 0.9-7-3build1), r-cran-bitops (= 1.0-6-4build1), r-cran-blob (= 1.2.1-2build1), r-cran-callr (= 3.4.3-2build1), r-cran-cli (= 2.0.2-2build1), r-cran-clipr (= 0.7.0-2build1), r-cran-colorspace (= 1.4-1+dfsg-1build1), r-cran-crayon (= 1.3.4-4ubuntu2), r-cran-curl (= 4.3+dfsg-1build1), r-cran-dbi (= 1.1.0-3), r-cran-desc (= 1.2.0-3build1), r-cran-digest (= 0.6.25-1build1), r-cran-ellipsis (= 0.3.1-1build1), r-cran-evaluate (= 0.14-2build1), r-cran-fansi (= 0.4.1-1build1), r-cran-farver (= 2.0.3-1build2), r-cran-formatr (= 1.7-2build1), r-cran-futile.logger (= 1.4.3-4build1), r-cran-futile.options (= 1.0.1-3build1), r-cran-ggplot2 (= 3.3.0+dfsg-2build1), r-cran-glue (= 1.4.1-1build1), r-cran-gtable (= 0.3.0+dfsg-2build1), r-cran-hms (= 0.5.3-2build1), r-cran-httr (= 1.4.1-1ubuntu2), r-cran-isoband (= 0.2.1-1build1), r-cran-jsonlite (= 1.6.1+dfsg-1build1), r-cran-labeling (= 0.3-4build1), r-cran-lambda.r (= 1.2.4-2build1), r-cran-lattice (= 0.20-41-1build1), r-cran-lifecycle (= 0.2.0-2build1), r-cran-littler (= 0.3.9-1build1), r-cran-magrittr (= 1.5-6build1), r-cran-mass (= 7.3-51.6-1build1), r-cran-matrix (= 1.2-18-1build1), r-cran-matrixstats (= 0.56.0-1build1), r-cran-memoise (= 1.1.0-3build1), r-cran-mgcv (= 1.8-31-1build1), r-cran-mime (= 0.9-1build1), r-cran-munsell (= 0.5.0-2build1), r-cran-nlme (= 3.1.148-1build1), r-cran-openssl (= 1.4.1+dfsg-2ubuntu2), r-cran-pillar (= 1.4.4-2build1), r-cran-pkgbuild (= 1.0.8-2build1), r-cran-pkgconfig (= 2.0.3-2build1), r-cran-pkgkitten (= 0.1.5-2), r-cran-pkgload (= 1.0.2-2build1), r-cran-plogr (= 0.2.0-3build1), r-cran-plyr (= 1.8.6-2build1), r-cran-png (= 0.1-7-3build1), r-cran-powerlaw (= 0.70.6-2build1), r-cran-pracma (= 2.2.9-2build1), r-cran-praise (= 1.0.0-4build1), r-cran-prettyunits (= 1.1.1-2build1), r-cran-processx (= 3.4.2-1build1), r-cran-ps (= 1.3.3-1build1), r-cran-r.methodss3 (= 1.8.0-2build1), r-cran-r.oo (= 1.23.0-2build1), r-cran-r.utils (= 2.9.2-2build1), r-cran-r6 (= 2.4.1-2build1), r-cran-rcolorbrewer (= 1.1-2-3), r-cran-rcpp (= 1.0.4.6-1build1), r-cran-rcurl (= 1.98-1.2-1build1), r-cran-readr (= 1.3.1-1build2), r-cran-reshape2 (= 1.4.4-2build1), r-cran-rlang (= 0.4.6-1build1), r-cran-rprojroot (= 1.3-2-3build1), r-cran-rsqlite (= 2.2.0-1build2), r-cran-rstudioapi (= 0.11-2), r-cran-scales (= 1.1.1-1build1), r-cran-snow (= 1:0.4.3-2), r-cran-stringi (= 1.4.6-1build2), r-cran-stringr (= 1.4.0-2build1), r-cran-sys (= 3.3-1build1), r-cran-testthat (= 2.3.2-2build1), r-cran-tibble (= 3.0.1-1build1), r-cran-utf8 (= 1.1.4-1build2), r-cran-vctrs (= 0.3.0-2build1), r-cran-viridislite (= 0.3.0-4), r-cran-withr (= 2.2.0-2), r-cran-xml (= 3.99-0.3-2build1), r-cran-xtable (= 1:1.8-4-2), readline-common (= 8.0-4), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-3ubuntu1), tar (= 1.30+dfsg-7), tzdata (= 2020a-0ubuntu1), ucf (= 3.0042), unzip (= 6.0-25ubuntu1), util-linux (= 2.34-0.1ubuntu9), x11-common (= 1:7.7+19ubuntu14), xauth (= 1:1.1-0ubuntu1), xdg-utils (= 1.1.3-2ubuntu1), xz-utils (= 5.2.4-1), zip (= 3.0-11build1), zlib1g (= 1:1.2.11.dfsg-2ubuntu1), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu1) Environment: DEB_BUILD_OPTIONS="parallel=8" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1590905183" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-bioc-cner_1.24.0+dfsg-1build1_riscv64.deb ------------------------------------------- new Debian package, version 2.0. size 8376804 bytes: control archive=2624 bytes. 1190 bytes, 14 lines control 4953 bytes, 60 lines md5sums Package: r-bioc-cner Version: 1.24.0+dfsg-1build1 Architecture: riscv64 Maintainer: Ubuntu Developers Installed-Size: 17841 Depends: r-base-core (>= 4.0.0.20200528-1), r-api-4.0, r-api-bioc-3.11, r-bioc-biostrings (>= 2.33.4), r-cran-dbi (>= 0.7), r-cran-rsqlite (>= 0.11.4), r-bioc-genomeinfodb (>= 1.1.3), r-bioc-genomicranges (>= 1.23.16), r-bioc-rtracklayer (>= 1.25.5), r-bioc-xvector (>= 0.5.4), r-bioc-genomicalignments (>= 1.1.9), r-bioc-s4vectors (>= 0.13.13), r-bioc-iranges (>= 2.5.27), r-cran-readr (>= 0.2.2), r-bioc-biocgenerics, r-cran-reshape2 (>= 1.4.1), r-cran-ggplot2 (>= 2.1.0), r-cran-powerlaw (>= 0.60.3), r-bioc-annotate (>= 1.50.0), r-bioc-go.db (>= 3.3.0), r-cran-r.utils (>= 2.3.0), r-bioc-keggrest (>= 1.14.0), libc6 (>= 2.28) Suggests: r-bioc-gviz (>= 1.7.4), r-cran-knitr, r-cran-rmarkdown, r-cran-testthat Section: gnu-r Priority: optional Homepage: https://bioconductor.org/packages/CNEr/ Description: CNE Detection and Visualization Large-scale identification and advanced visualization of sets of conserved noncoding elements. Original-Maintainer: Debian R Packages Maintainers drwxr-xr-x root/root 0 2020-05-31 06:06 ./ drwxr-xr-x root/root 0 2020-05-31 06:06 ./usr/ drwxr-xr-x root/root 0 2020-05-31 06:06 ./usr/lib/ drwxr-xr-x root/root 0 2020-05-31 06:06 ./usr/lib/R/ drwxr-xr-x root/root 0 2020-05-31 06:06 ./usr/lib/R/site-library/ drwxr-xr-x root/root 0 2020-05-31 06:06 ./usr/lib/R/site-library/CNEr/ -rw-r--r-- root/root 778 2020-05-31 06:06 ./usr/lib/R/site-library/CNEr/CITATION -rw-r--r-- root/root 1945 2020-05-31 06:06 ./usr/lib/R/site-library/CNEr/DESCRIPTION -rw-r--r-- root/root 2503 2020-05-31 06:06 ./usr/lib/R/site-library/CNEr/INDEX drwxr-xr-x root/root 0 2020-05-31 06:06 ./usr/lib/R/site-library/CNEr/Meta/ -rw-r--r-- root/root 2226 2020-05-31 06:06 ./usr/lib/R/site-library/CNEr/Meta/Rd.rds -rw-r--r-- root/root 237 2020-05-31 06:06 ./usr/lib/R/site-library/CNEr/Meta/data.rds -rw-r--r-- root/root 123 2020-05-31 06:06 ./usr/lib/R/site-library/CNEr/Meta/features.rds -rw-r--r-- root/root 2152 2020-05-31 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636 2020-05-31 06:06 ./usr/share/doc/r-bioc-cner/changelog.Debian.gz -rw-r--r-- root/root 2367 2020-05-20 16:14 ./usr/share/doc/r-bioc-cner/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: riscv64 Build Type: any Build-Space: 45192 Build-Time: 847 Distribution: groovy-proposed Host Architecture: riscv64 Install-Time: 535 Job: r-bioc-cner_1.24.0+dfsg-1build1.dsc Machine Architecture: riscv64 Package: r-bioc-cner Package-Time: 1415 Source-Version: 1.24.0+dfsg-1build1 Space: 45192 Status: successful Version: 1.24.0+dfsg-1build1 -------------------------------------------------------------------------------- Finished at 2020-05-31T23:21:15Z Build needed 00:23:35, 45192k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=groovy --arch=riscv64 PACKAGEBUILD-19385925 Scanning for processes to kill in build PACKAGEBUILD-19385925 RUN: /usr/share/launchpad-buildd/bin/in-target umount-chroot --backend=chroot --series=groovy --arch=riscv64 PACKAGEBUILD-19385925 Stopping target for build PACKAGEBUILD-19385925 RUN: /usr/share/launchpad-buildd/bin/in-target remove-build --backend=chroot --series=groovy --arch=riscv64 PACKAGEBUILD-19385925 Removing build PACKAGEBUILD-19385925