https://launchpad.net/ubuntu/+source/r-bioc-cummerbund/2.24.0-2/+build/15742214
RUN: /usr/share/launchpad-buildd/slavebin/slave-prep 
Forking launchpad-buildd slave process...
Kernel version: Linux lgw01-amd64-019 4.4.0-139-generic #165-Ubuntu SMP Wed Oct 24 10:58:50 UTC 2018 x86_64
Buildd toolchain package versions: launchpad-buildd_165 python-lpbuildd_165 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2.
Syncing the system clock with the buildd NTP service...
 5 Dec 17:32:59 ntpdate[1822]: adjust time server 10.211.37.1 offset 0.009611 sec
RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-15742214 /home/buildd/filecache-default/b71572c9405b6ce6ff1d1ad001cf764bb07f52ae
Creating target for build PACKAGEBUILD-15742214
RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-15742214
Starting target for build PACKAGEBUILD-15742214
RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-15742214 'deb http://ftpmaster.internal/ubuntu disco main universe' 'deb http://ftpmaster.internal/ubuntu disco-security main universe' 'deb http://ftpmaster.internal/ubuntu disco-updates main universe' 'deb http://ftpmaster.internal/ubuntu disco-proposed main universe'
Overriding sources.list in build-PACKAGEBUILD-15742214
RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-15742214
Updating target for build PACKAGEBUILD-15742214
Get:1 http://ftpmaster.internal/ubuntu disco InRelease [243 kB]
Get:2 http://ftpmaster.internal/ubuntu disco-security InRelease [65.4 kB]
Get:3 http://ftpmaster.internal/ubuntu disco-updates InRelease [65.4 kB]
Get:4 http://ftpmaster.internal/ubuntu disco-proposed InRelease [93.2 kB]
Get:5 http://ftpmaster.internal/ubuntu disco/main amd64 Packages [1004 kB]
Get:6 http://ftpmaster.internal/ubuntu disco/main Translation-en [508 kB]
Get:7 http://ftpmaster.internal/ubuntu disco/universe amd64 Packages [8925 kB]
Get:8 http://ftpmaster.internal/ubuntu disco/universe Translation-en [5131 kB]
Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 Packages [54.1 kB]
Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main Translation-en [29.3 kB]
Get:11 http://ftpmaster.internal/ubuntu disco-proposed/universe amd64 Packages [297 kB]
Get:12 http://ftpmaster.internal/ubuntu disco-proposed/universe Translation-en [157 kB]
Fetched 16.6 MB in 7s (2351 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
The following packages were automatically installed and are no longer required:
  libgdbm5 libperl5.26 perl-modules-5.26
Use 'sudo apt autoremove' to remove them.
The following NEW packages will be installed:
  libgdbm6 libperl5.28 perl-modules-5.28
The following packages will be upgraded:
  apt base-files binutils binutils-common binutils-x86-64-linux-gnu cpp cpp-8
  dash dmsetup dpkg dpkg-dev fakeroot findutils g++ g++-8 gcc gcc-8 gcc-8-base
  grep hostname init init-system-helpers libapparmor1 libapt-pkg5.0 libasan5
  libatomic1 libaudit-common libaudit1 libbinutils libcap-ng0 libcc1-0
  libdb5.3 libdevmapper1.02.1 libdpkg-perl libfakeroot libffi6 libgcc-8-dev
  libgcc1 libgcrypt20 libgdbm-compat4 libgmp10 libgnutls30 libgomp1
  libgpg-error0 libhogweed4 libitm1 libkmod2 liblsan0 libmpx2 libnettle6
  libquadmath0 libseccomp2 libselinux1 libsemanage-common libsemanage1
  libsqlite3-0 libssl1.1 libstdc++-8-dev libstdc++6 libsystemd0 libtsan0
  libubsan1 libudev1 linux-libc-dev lockfile-progs openssl perl perl-base sed
  systemd systemd-sysv tar tzdata
73 upgraded, 3 newly installed, 0 to remove and 0 not upgraded.
Need to get 54.7 MB of archives.
After this operation, 48.9 MB of additional disk space will be used.
Get:1 http://ftpmaster.internal/ubuntu disco/main amd64 base-files amd64 10.1ubuntu8 [60.1 kB]
Get:2 http://ftpmaster.internal/ubuntu disco/main amd64 tar amd64 1.30+dfsg-3 [242 kB]
Get:3 http://ftpmaster.internal/ubuntu disco/main amd64 dpkg amd64 1.19.2ubuntu1 [1101 kB]
Get:4 http://ftpmaster.internal/ubuntu disco/main amd64 dash amd64 0.5.10.2-1 [89.3 kB]
Get:5 http://ftpmaster.internal/ubuntu disco/main amd64 findutils amd64 4.6.0+git+20181018-1 [295 kB]
Get:6 http://ftpmaster.internal/ubuntu disco/main amd64 grep amd64 3.1-3 [152 kB]
Get:7 http://ftpmaster.internal/ubuntu disco/main amd64 hostname amd64 3.21 [11.2 kB]
Get:8 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 perl-modules-5.28 all 5.28.1-2 [2812 kB]
Get:9 http://ftpmaster.internal/ubuntu disco/main amd64 libgdbm6 amd64 1.18.1-2 [27.6 kB]
Get:10 http://ftpmaster.internal/ubuntu disco/main amd64 libgdbm-compat4 amd64 1.18.1-2 [6152 B]
Get:11 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libperl5.28 amd64 5.28.1-2 [3830 kB]
Get:12 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 perl amd64 5.28.1-2 [204 kB]
Get:13 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 perl-base amd64 5.28.1-2 [1511 kB]
Get:14 http://ftpmaster.internal/ubuntu disco/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.2 [672 kB]
Get:15 http://ftpmaster.internal/ubuntu disco/main amd64 sed amd64 4.5-2 [186 kB]
Get:16 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 init-system-helpers all 1.56 [38.8 kB]
Get:17 http://ftpmaster.internal/ubuntu disco/main amd64 libquadmath0 amd64 8.2.0-10ubuntu1 [134 kB]
Get:18 http://ftpmaster.internal/ubuntu disco/main amd64 libubsan1 amd64 8.2.0-10ubuntu1 [121 kB]
Get:19 http://ftpmaster.internal/ubuntu disco/main amd64 gcc-8-base amd64 8.2.0-10ubuntu1 [18.7 kB]
Get:20 http://ftpmaster.internal/ubuntu disco/main amd64 libgcc1 amd64 1:8.2.0-10ubuntu1 [40.8 kB]
Get:21 http://ftpmaster.internal/ubuntu disco/main amd64 libitm1 amd64 8.2.0-10ubuntu1 [28.2 kB]
Get:22 http://ftpmaster.internal/ubuntu disco/main amd64 libasan5 amd64 8.2.0-10ubuntu1 [364 kB]
Get:23 http://ftpmaster.internal/ubuntu disco/main amd64 libgomp1 amd64 8.2.0-10ubuntu1 [76.4 kB]
Get:24 http://ftpmaster.internal/ubuntu disco/main amd64 libatomic1 amd64 8.2.0-10ubuntu1 [9060 B]
Get:25 http://ftpmaster.internal/ubuntu disco/main amd64 liblsan0 amd64 8.2.0-10ubuntu1 [132 kB]
Get:26 http://ftpmaster.internal/ubuntu disco/main amd64 libtsan0 amd64 8.2.0-10ubuntu1 [288 kB]
Get:27 http://ftpmaster.internal/ubuntu disco/main amd64 libmpx2 amd64 8.2.0-10ubuntu1 [11.7 kB]
Get:28 http://ftpmaster.internal/ubuntu disco/main amd64 cpp-8 amd64 8.2.0-10ubuntu1 [7222 kB]
Get:29 http://ftpmaster.internal/ubuntu disco/main amd64 libcc1-0 amd64 8.2.0-10ubuntu1 [39.5 kB]
Get:30 http://ftpmaster.internal/ubuntu disco/main amd64 gcc-8 amd64 8.2.0-10ubuntu1 [8000 kB]
Get:31 http://ftpmaster.internal/ubuntu disco/main amd64 g++-8 amd64 8.2.0-10ubuntu1 [8116 kB]
Get:32 http://ftpmaster.internal/ubuntu disco/main amd64 libstdc++-8-dev amd64 8.2.0-10ubuntu1 [1539 kB]
Get:33 http://ftpmaster.internal/ubuntu disco/main amd64 libgcc-8-dev amd64 8.2.0-10ubuntu1 [2305 kB]
Get:34 http://ftpmaster.internal/ubuntu disco/main amd64 libstdc++6 amd64 8.2.0-10ubuntu1 [400 kB]
Get:35 http://ftpmaster.internal/ubuntu disco/main amd64 libgmp10 amd64 2:6.1.2+dfsg-4 [236 kB]
Get:36 http://ftpmaster.internal/ubuntu disco/main amd64 libbinutils amd64 2.31.1-10ubuntu1 [482 kB]
Get:37 http://ftpmaster.internal/ubuntu disco/main amd64 binutils-common amd64 2.31.1-10ubuntu1 [194 kB]
Get:38 http://ftpmaster.internal/ubuntu disco/main amd64 binutils amd64 2.31.1-10ubuntu1 [3396 B]
Get:39 http://ftpmaster.internal/ubuntu disco/main amd64 binutils-x86-64-linux-gnu amd64 2.31.1-10ubuntu1 [1830 kB]
Get:40 http://ftpmaster.internal/ubuntu disco/main amd64 libudev1 amd64 239-7ubuntu15 [54.7 kB]
Get:41 http://ftpmaster.internal/ubuntu disco/main amd64 libapt-pkg5.0 amd64 1.8.0~alpha2ubuntu1 [814 kB]
Get:42 http://ftpmaster.internal/ubuntu disco/main amd64 libnettle6 amd64 3.4.1~rc1-1 [111 kB]
Get:43 http://ftpmaster.internal/ubuntu disco/main amd64 libhogweed4 amd64 3.4.1~rc1-1 [140 kB]
Get:44 http://ftpmaster.internal/ubuntu disco/main amd64 libgnutls30 amd64 3.6.4-2ubuntu2 [747 kB]
Get:45 http://ftpmaster.internal/ubuntu disco/main amd64 libseccomp2 amd64 2.3.3-3ubuntu2 [38.9 kB]
Get:46 http://ftpmaster.internal/ubuntu disco/main amd64 apt amd64 1.8.0~alpha2ubuntu1 [1182 kB]
Get:47 http://ftpmaster.internal/ubuntu disco/main amd64 systemd-sysv amd64 239-7ubuntu15 [9396 B]
Get:48 http://ftpmaster.internal/ubuntu disco/main amd64 libapparmor1 amd64 2.12-4ubuntu10 [29.9 kB]
Get:49 http://ftpmaster.internal/ubuntu disco/main amd64 libaudit-common all 1:2.8.3-1ubuntu3 [4068 B]
Get:50 http://ftpmaster.internal/ubuntu disco/main amd64 libcap-ng0 amd64 0.7.9-1build1 [10.9 kB]
Get:51 http://ftpmaster.internal/ubuntu disco/main amd64 libaudit1 amd64 1:2.8.3-1ubuntu3 [38.8 kB]
Get:52 http://ftpmaster.internal/ubuntu disco/main amd64 libgpg-error0 amd64 1.32-3 [56.0 kB]
Get:53 http://ftpmaster.internal/ubuntu disco/main amd64 libkmod2 amd64 25-1ubuntu2 [41.7 kB]
Get:54 http://ftpmaster.internal/ubuntu disco/main amd64 systemd amd64 239-7ubuntu15 [2971 kB]
Get:55 http://ftpmaster.internal/ubuntu disco/main amd64 libsystemd0 amd64 239-7ubuntu15 [212 kB]
Get:56 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 init amd64 1.56 [6652 B]
Get:57 http://ftpmaster.internal/ubuntu disco/main amd64 libgcrypt20 amd64 1.8.4-3ubuntu1 [420 kB]
Get:58 http://ftpmaster.internal/ubuntu disco/main amd64 libselinux1 amd64 2.8-1build2 [68.6 kB]
Get:59 http://ftpmaster.internal/ubuntu disco/main amd64 libsemanage-common all 2.8-1build2 [6892 B]
Get:60 http://ftpmaster.internal/ubuntu disco/main amd64 libsemanage1 amd64 2.8-1build2 [85.1 kB]
Get:61 http://ftpmaster.internal/ubuntu disco/main amd64 libffi6 amd64 3.2.1-9 [18.1 kB]
Get:62 http://ftpmaster.internal/ubuntu disco/main amd64 libdevmapper1.02.1 amd64 2:1.02.145-4.1ubuntu4 [127 kB]
Get:63 http://ftpmaster.internal/ubuntu disco/main amd64 dmsetup amd64 2:1.02.145-4.1ubuntu4 [74.6 kB]
Get:64 http://ftpmaster.internal/ubuntu disco/main amd64 libsqlite3-0 amd64 3.26.0-1 [530 kB]
Get:65 http://ftpmaster.internal/ubuntu disco/main amd64 libssl1.1 amd64 1.1.1a-1ubuntu2 [1297 kB]
Get:66 http://ftpmaster.internal/ubuntu disco/main amd64 openssl amd64 1.1.1a-1ubuntu2 [618 kB]
Get:67 http://ftpmaster.internal/ubuntu disco/main amd64 tzdata all 2018g-1 [188 kB]
Get:68 http://ftpmaster.internal/ubuntu disco/main amd64 g++ amd64 4:8.2.0-2ubuntu2 [1608 B]
Get:69 http://ftpmaster.internal/ubuntu disco/main amd64 gcc amd64 4:8.2.0-2ubuntu2 [5224 B]
Get:70 http://ftpmaster.internal/ubuntu disco/main amd64 cpp amd64 4:8.2.0-2ubuntu2 [27.6 kB]
Get:71 http://ftpmaster.internal/ubuntu disco/main amd64 dpkg-dev all 1.19.2ubuntu1 [549 kB]
Get:72 http://ftpmaster.internal/ubuntu disco/main amd64 libdpkg-perl all 1.19.2ubuntu1 [227 kB]
Get:73 http://ftpmaster.internal/ubuntu disco/main amd64 libfakeroot amd64 1.23-1 [25.3 kB]
Get:74 http://ftpmaster.internal/ubuntu disco/main amd64 fakeroot amd64 1.23-1 [62.4 kB]
Get:75 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 linux-libc-dev amd64 4.19.0-7.8 [1043 kB]
Get:76 http://ftpmaster.internal/ubuntu disco/main amd64 lockfile-progs amd64 0.1.18 [9872 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 54.7 MB in 3s (16.3 MB/s)
(Reading database ... 12650 files and directories currently installed.)
Preparing to unpack .../base-files_10.1ubuntu8_amd64.deb ...
Unpacking base-files (10.1ubuntu8) over (10.1ubuntu7) ...
Setting up base-files (10.1ubuntu8) ...
Installing new version of config file /etc/issue ...
Installing new version of config file /etc/issue.net ...
Installing new version of config file /etc/lsb-release ...
(Reading database ... 12650 files and directories currently installed.)
Preparing to unpack .../tar_1.30+dfsg-3_amd64.deb ...
Unpacking tar (1.30+dfsg-3) over (1.30+dfsg-2) ...
Setting up tar (1.30+dfsg-3) ...
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Preparing to unpack .../dpkg_1.19.2ubuntu1_amd64.deb ...
Unpacking dpkg (1.19.2ubuntu1) over (1.19.0.5ubuntu5) ...
Setting up dpkg (1.19.2ubuntu1) ...
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Preparing to unpack .../dash_0.5.10.2-1_amd64.deb ...
dpkg-divert: warning: please specify --no-rename explicitly, the default will change to --rename in 1.20.x
Removing 'diversion of /bin/sh to /bin/sh.distrib by dash'
dpkg-divert: warning: please specify --no-rename explicitly, the default will change to --rename in 1.20.x
Adding 'diversion of /bin/sh to /bin/sh.distrib by bash'
dpkg-divert: warning: please specify --no-rename explicitly, the default will change to --rename in 1.20.x
Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash'
dpkg-divert: warning: please specify --no-rename explicitly, the default will change to --rename in 1.20.x
Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash'
Unpacking dash (0.5.10.2-1) over (0.5.8-2.10) ...
Setting up dash (0.5.10.2-1) ...
dpkg-divert: warning: please specify --no-rename explicitly, the default will change to --rename in 1.20.x
Removing 'diversion of /bin/sh to /bin/sh.distrib by bash'
dpkg-divert: warning: please specify --no-rename explicitly, the default will change to --rename in 1.20.x
Adding 'diversion of /bin/sh to /bin/sh.distrib by dash'
dpkg-divert: warning: please specify --no-rename explicitly, the default will change to --rename in 1.20.x
Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash'
dpkg-divert: warning: please specify --no-rename explicitly, the default will change to --rename in 1.20.x
Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash'
(Reading database ... 12635 files and directories currently installed.)
Preparing to unpack .../findutils_4.6.0+git+20181018-1_amd64.deb ...
Unpacking findutils (4.6.0+git+20181018-1) over (4.6.0+git+20180808-2) ...
Setting up findutils (4.6.0+git+20181018-1) ...
(Reading database ... 12635 files and directories currently installed.)
Preparing to unpack .../archives/grep_3.1-3_amd64.deb ...
Unpacking grep (3.1-3) over (3.1-2ubuntu1) ...
Setting up grep (3.1-3) ...
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Preparing to unpack .../hostname_3.21_amd64.deb ...
Unpacking hostname (3.21) over (3.20) ...
Setting up hostname (3.21) ...
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Preparing to unpack .../0-perl_5.28.1-2_amd64.deb ...
Unpacking perl (5.28.1-2) over (5.26.2-7) ...
Selecting previously unselected package perl-modules-5.28.
Preparing to unpack .../1-perl-modules-5.28_5.28.1-2_all.deb ...
Unpacking perl-modules-5.28 (5.28.1-2) ...
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Selecting previously unselected package libperl5.28:amd64.
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Unpacking libperl5.28:amd64 (5.28.1-2) ...
Preparing to unpack .../5-perl-base_5.28.1-2_amd64.deb ...
Unpacking perl-base (5.28.1-2) over (5.26.2-7) ...
Setting up perl-base (5.28.1-2) ...
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Unpacking libdb5.3:amd64 (5.3.28+dfsg1-0.2) over (5.3.28+dfsg1-0.1) ...
Setting up libdb5.3:amd64 (5.3.28+dfsg1-0.2) ...
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Setting up sed (4.5-2) ...
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Setting up init-system-helpers (1.56) ...
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Unpacking libubsan1:amd64 (8.2.0-10ubuntu1) over (8.2.0-7ubuntu1) ...
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Unpacking gcc-8-base:amd64 (8.2.0-10ubuntu1) over (8.2.0-7ubuntu1) ...
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Local time is now:      Wed Dec  5 17:34:21 UTC 2018.
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RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15742214 amd64 disco-proposed -c chroot:build-PACKAGEBUILD-15742214 --arch=amd64 --dist=disco-proposed --nolog -A r-bioc-cummerbund_2.24.0-2.dsc
Initiating build PACKAGEBUILD-15742214 with 4 jobs across 4 processor cores.
Kernel reported to sbuild: 4.4.0-139-generic #165-Ubuntu SMP Wed Oct 24 10:58:50 UTC 2018 x86_64
sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-019.buildd

+==============================================================================+
| r-bioc-cummerbund 2.24.0-2 (amd64)                         05 Dec 2018 17:34 |
+==============================================================================+

Package: r-bioc-cummerbund
Version: 2.24.0-2
Source Version: 2.24.0-2
Distribution: disco-proposed
Machine Architecture: amd64
Host Architecture: amd64
Build Architecture: amd64

I: NOTICE: Log filtering will replace 'build/r-bioc-cummerbund-pXGh3u/r-bioc-cummerbund-2.24.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-cummerbund-pXGh3u' with '<<BUILDDIR>>'
I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15742214/chroot-autobuild' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


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r-bioc-cummerbund_2.24.0-2.dsc exists in .; copying to chroot

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+------------------------------------------------------------------------------+
| Install core build dependencies (apt-based resolver)                         |
+------------------------------------------------------------------------------+

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The following packages were automatically installed and are no longer required:
  libgdbm5 libperl5.26 perl-modules-5.26
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
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Merged Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.3.2), r-cran-rsqlite, r-cran-ggplot2, r-cran-reshape2, r-cran-fastcluster, r-bioc-rtracklayer, r-bioc-gviz, r-cran-plyr, r-bioc-s4vectors, r-bioc-biobase
Filtered Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.3.2), r-cran-rsqlite, r-cran-ggplot2, r-cran-reshape2, r-cran-fastcluster, r-bioc-rtracklayer, r-bioc-gviz, r-cran-plyr, r-bioc-s4vectors, r-bioc-biobase
dpkg-deb: building package 'sbuild-build-depends-r-bioc-cummerbund-dummy' in '/<<BUILDDIR>>/resolver-NJRfr9/apt_archive/sbuild-build-depends-r-bioc-cummerbund-dummy.deb'.
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+------------------------------------------------------------------------------+
| Install r-bioc-cummerbund build dependencies (apt-based resolver)            |
+------------------------------------------------------------------------------+

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  libgdbm5 libperl5.26 perl-modules-5.26
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper
  dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig
  fontconfig-config fonts-dejavu-core fonts-mathjax gettext gettext-base
  gfortran gfortran-8 groff-base icu-devtools intltool-debian
  libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libbsd0
  libbz2-dev libc-ares2 libcairo2 libcroco3 libcurl4 libdatrie1 libelf1
  libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
  libfreetype6 libfribidi0 libgfortran-8-dev libgfortran5 libglib2.0-0
  libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b
  libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal
  libhttp-parser2.8 libhx509-5-heimdal libice6 libicu-dev libicu63 libjbig0
  libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev
  libjs-bootstrap libjs-highlight.js libjs-jquery libjs-jquery-datatables
  libjs-mathjax libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3
  libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common
  liblzma-dev libmagic-mgc libmagic1 libncurses-dev libncurses5-dev
  libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
  libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5
  libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev
  libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2
  libsm6 libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6
  libtool libuv1 libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6
  libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
  libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db node-highlight.js
  node-normalize.css nodejs pkg-config po-debconf r-base-core r-base-dev
  r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-biobase
  r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings
  r-bioc-biovizbase r-bioc-bsgenome r-bioc-delayedarray r-bioc-ensembldb
  r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments
  r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-gviz r-bioc-iranges
  r-bioc-protgenerics r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors
  r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector
  r-cran-acepack r-cran-assertthat r-cran-backports r-cran-base64enc
  r-cran-bindr r-cran-bindrcpp r-cran-bit r-cran-bit64 r-cran-bitops
  r-cran-blob r-cran-checkmate r-cran-chron r-cran-cli r-cran-cluster
  r-cran-colorspace r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi
  r-cran-dichromat r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-fansi
  r-cran-fastcluster r-cran-foreign r-cran-formatr r-cran-formula
  r-cran-futile.logger r-cran-futile.options r-cran-ggplot2 r-cran-glue
  r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hmisc r-cran-hms
  r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets r-cran-httr
  r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-lattice
  r-cran-latticeextra r-cran-lazyeval r-cran-littler r-cran-magrittr
  r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise
  r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-nnet
  r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr
  r-cran-prettyunits r-cran-progress r-cran-purrr r-cran-r6
  r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-reshape2 r-cran-rlang
  r-cran-rpart r-cran-rsqlite r-cran-rstudioapi r-cran-scales r-cran-snow
  r-cran-stringi r-cran-stringr r-cran-survival r-cran-tibble r-cran-tidyr
  r-cran-tidyselect r-cran-utf8 r-cran-viridis r-cran-viridislite r-cran-withr
  r-cran-xml r-cran-yaml ucf unzip x11-common xauth xdg-utils zip zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev
  gfortran-multilib gfortran-doc gfortran-8-multilib gfortran-8-doc
  libgfortran5-dbg libcoarrays-dev groff liblapack-doc krb5-doc krb5-user
  icu-doc fonts-mathjax-extras fonts-stix libjs-mathjax-doc liblzma-doc
  ncurses-doc readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk m4-doc apparmor
  less www-browser libjs-html5shiv libmail-box-perl ess r-doc-info | r-doc-pdf
  r-mathlib r-base-html texlive-base texlive-latex-base
  texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
  texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
  r-bioc-graph r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-foreach
  r-cran-batchjobs r-cran-bbmisc r-cran-doparallel r-cran-rmpi
  r-bioc-shortread r-cran-codetools r-cran-runit r-cran-batchtools
  r-cran-rmarkdown r-cran-testthat r-cran-biocmanager r-bioc-annotationhub
  r-cran-xtable r-bioc-genefilter r-bioc-limma r-bioc-snpstats libgdal-dev
  r-cran-devtools r-cran-webshot r-cran-kernsmooth r-cran-kernlab
  r-cran-mvtnorm r-cran-vcd r-cran-shiny r-cran-shinyjs r-cran-r.utils
  r-cran-xts r-cran-zoo r-cran-rmysql r-cran-callr r-cran-dbplyr
  r-cran-lubridate r-cran-mgcv r-cran-rpostgresql r-cran-maps r-cran-maptools
  r-cran-multcomp r-cran-quantreg r-cran-forcats r-cran-httpuv r-cran-png
  r-cran-readr r-cran-xml2 r-cran-rgl r-cran-getopt r-cran-iterators
  r-cran-inline r-cran-rsprng r-cran-rlecuyer
Recommended packages:
  devscripts curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data
  shared-mime-info xdg-user-dirs javascript-common krb5-locales libpng-tools
  publicsuffix libsasl2-modules libltdl-dev nodejs-doc libmail-sendmail-perl
  r-recommended r-doc-html r-bioc-go.db r-cran-runit r-cran-testthat
  r-bioc-genefilter r-bioc-shortread r-bioc-annotate r-cran-fastmatch
  r-cran-mockery r-cran-httpuv r-cran-webutils r-cran-bit64 r-cran-testit
  r-cran-codetools r-cran-sp r-cran-mapproj r-cran-hexbin r-cran-tikzdevice
  r-cran-tinytex r-cran-lubridate r-cran-domc r-cran-abind r-cran-dbitest
  r-cran-mockr libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl
  x11-utils x11-xserver-utils
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper
  dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig
  fontconfig-config fonts-dejavu-core fonts-mathjax gettext gettext-base
  gfortran gfortran-8 groff-base icu-devtools intltool-debian
  libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libbsd0
  libbz2-dev libc-ares2 libcairo2 libcroco3 libcurl4 libdatrie1 libelf1
  libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
  libfreetype6 libfribidi0 libgfortran-8-dev libgfortran5 libglib2.0-0
  libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b
  libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal
  libhttp-parser2.8 libhx509-5-heimdal libice6 libicu-dev libicu63 libjbig0
  libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev
  libjs-bootstrap libjs-highlight.js libjs-jquery libjs-jquery-datatables
  libjs-mathjax libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3
  libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common
  liblzma-dev libmagic-mgc libmagic1 libncurses-dev libncurses5-dev
  libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
  libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5
  libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev
  libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2
  libsm6 libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6
  libtool libuv1 libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6
  libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
  libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db node-highlight.js
  node-normalize.css nodejs pkg-config po-debconf r-base-core r-base-dev
  r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-biobase
  r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings
  r-bioc-biovizbase r-bioc-bsgenome r-bioc-delayedarray r-bioc-ensembldb
  r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments
  r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-gviz r-bioc-iranges
  r-bioc-protgenerics r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors
  r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector
  r-cran-acepack r-cran-assertthat r-cran-backports r-cran-base64enc
  r-cran-bindr r-cran-bindrcpp r-cran-bit r-cran-bit64 r-cran-bitops
  r-cran-blob r-cran-checkmate r-cran-chron r-cran-cli r-cran-cluster
  r-cran-colorspace r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi
  r-cran-dichromat r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-fansi
  r-cran-fastcluster r-cran-foreign r-cran-formatr r-cran-formula
  r-cran-futile.logger r-cran-futile.options r-cran-ggplot2 r-cran-glue
  r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hmisc r-cran-hms
  r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets r-cran-httr
  r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-lattice
  r-cran-latticeextra r-cran-lazyeval r-cran-littler r-cran-magrittr
  r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise
  r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-nnet
  r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr
  r-cran-prettyunits r-cran-progress r-cran-purrr r-cran-r6
  r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-reshape2 r-cran-rlang
  r-cran-rpart r-cran-rsqlite r-cran-rstudioapi r-cran-scales r-cran-snow
  r-cran-stringi r-cran-stringr r-cran-survival r-cran-tibble r-cran-tidyr
  r-cran-tidyselect r-cran-utf8 r-cran-viridis r-cran-viridislite r-cran-withr
  r-cran-xml r-cran-yaml sbuild-build-depends-r-bioc-cummerbund-dummy ucf
  unzip x11-common xauth xdg-utils zip zlib1g-dev
0 upgraded, 260 newly installed, 0 to remove and 0 not upgraded.
Need to get 226 MB of archives.
After this operation, 551 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-NJRfr9/apt_archive ./ sbuild-build-depends-r-bioc-cummerbund-dummy 0.invalid.0 [960 B]
Get:2 http://ftpmaster.internal/ubuntu disco/main amd64 libxau6 amd64 1:1.0.8-1 [8376 B]
Get:3 http://ftpmaster.internal/ubuntu disco/main amd64 libbsd0 amd64 0.9.1-1 [44.6 kB]
Get:4 http://ftpmaster.internal/ubuntu disco/main amd64 libxdmcp6 amd64 1:1.1.2-3 [10.7 kB]
Get:5 http://ftpmaster.internal/ubuntu disco/main amd64 libxcb1 amd64 1.13.1-1 [45.4 kB]
Get:6 http://ftpmaster.internal/ubuntu disco/main amd64 libx11-data all 2:1.6.7-1 [113 kB]
Get:7 http://ftpmaster.internal/ubuntu disco/main amd64 libx11-6 amd64 2:1.6.7-1 [572 kB]
Get:8 http://ftpmaster.internal/ubuntu disco/main amd64 libxext6 amd64 2:1.3.3-1 [29.4 kB]
Get:9 http://ftpmaster.internal/ubuntu disco/main amd64 bsdmainutils amd64 11.1.2ubuntu2 [181 kB]
Get:10 http://ftpmaster.internal/ubuntu disco/main amd64 groff-base amd64 1.22.3-10 [1153 kB]
Get:11 http://ftpmaster.internal/ubuntu disco/main amd64 libpipeline1 amd64 1.5.0-2 [25.7 kB]
Get:12 http://ftpmaster.internal/ubuntu disco/main amd64 man-db amd64 2.8.4-3 [1028 kB]
Get:13 http://ftpmaster.internal/ubuntu disco/main amd64 x11-common all 1:7.7+19ubuntu8 [22.5 kB]
Get:14 http://ftpmaster.internal/ubuntu disco/main amd64 libice6 amd64 2:1.0.9-2 [40.2 kB]
Get:15 http://ftpmaster.internal/ubuntu disco/main amd64 libsm6 amd64 2:1.2.2-1 [15.8 kB]
Get:16 http://ftpmaster.internal/ubuntu disco/universe amd64 node-normalize.css all 8.0.1-1 [9976 B]
Get:17 http://ftpmaster.internal/ubuntu disco/main amd64 libmagic-mgc amd64 1:5.34-2 [197 kB]
Get:18 http://ftpmaster.internal/ubuntu disco/main amd64 libmagic1 amd64 1:5.34-2 [72.3 kB]
Get:19 http://ftpmaster.internal/ubuntu disco/main amd64 file amd64 1:5.34-2 [22.8 kB]
Get:20 http://ftpmaster.internal/ubuntu disco/main amd64 libelf1 amd64 0.175-1 [44.2 kB]
Get:21 http://ftpmaster.internal/ubuntu disco/main amd64 libexpat1 amd64 2.2.6-1 [87.2 kB]
Get:22 http://ftpmaster.internal/ubuntu disco/main amd64 libfribidi0 amd64 1.0.5-3 [26.1 kB]
Get:23 http://ftpmaster.internal/ubuntu disco/main amd64 libglib2.0-0 amd64 2.58.1-2 [1176 kB]
Get:24 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libicu63 amd64 63.1-5 [8284 kB]
Get:25 http://ftpmaster.internal/ubuntu disco/main amd64 libxml2 amd64 2.9.4+dfsg1-7ubuntu3 [625 kB]
Get:26 http://ftpmaster.internal/ubuntu disco/main amd64 ucf all 3.0038 [50.5 kB]
Get:27 http://ftpmaster.internal/ubuntu disco/main amd64 gettext-base amd64 0.19.8.1-9 [50.1 kB]
Get:28 http://ftpmaster.internal/ubuntu disco/main amd64 libkrb5support0 amd64 1.16.1-1ubuntu1 [31.0 kB]
Get:29 http://ftpmaster.internal/ubuntu disco/main amd64 libk5crypto3 amd64 1.16.1-1ubuntu1 [85.5 kB]
Get:30 http://ftpmaster.internal/ubuntu disco/main amd64 libkeyutils1 amd64 1.5.9-9.3 [9640 B]
Get:31 http://ftpmaster.internal/ubuntu disco/main amd64 libkrb5-3 amd64 1.16.1-1ubuntu1 [281 kB]
Get:32 http://ftpmaster.internal/ubuntu disco/main amd64 libgssapi-krb5-2 amd64 1.16.1-1ubuntu1 [122 kB]
Get:33 http://ftpmaster.internal/ubuntu disco/main amd64 libpsl5 amd64 0.20.2-2 [50.0 kB]
Get:34 http://ftpmaster.internal/ubuntu disco/main amd64 libxmuu1 amd64 2:1.1.2-2 [9674 B]
Get:35 http://ftpmaster.internal/ubuntu disco/main amd64 xauth amd64 1:1.0.10-1 [24.6 kB]
Get:36 http://ftpmaster.internal/ubuntu disco/main amd64 libsigsegv2 amd64 2.12-2 [13.9 kB]
Get:37 http://ftpmaster.internal/ubuntu disco/main amd64 m4 amd64 1.4.18-2 [199 kB]
Get:38 http://ftpmaster.internal/ubuntu disco/main amd64 autoconf all 2.69-11 [322 kB]
Get:39 http://ftpmaster.internal/ubuntu disco/main amd64 autotools-dev all 20180224.1 [39.6 kB]
Get:40 http://ftpmaster.internal/ubuntu disco/main amd64 automake all 1:1.16.1-4 [522 kB]
Get:41 http://ftpmaster.internal/ubuntu disco/main amd64 autopoint all 0.19.8.1-9 [412 kB]
Get:42 http://ftpmaster.internal/ubuntu disco/main amd64 dctrl-tools amd64 2.24-3 [61.5 kB]
Get:43 http://ftpmaster.internal/ubuntu disco/main amd64 libtool all 2.4.6-6 [195 kB]
Get:44 http://ftpmaster.internal/ubuntu disco/main amd64 dh-autoreconf all 19 [16.1 kB]
Get:45 http://ftpmaster.internal/ubuntu disco/main amd64 libarchive-zip-perl all 1.64-1 [84.9 kB]
Get:46 http://ftpmaster.internal/ubuntu disco/main amd64 libfile-stripnondeterminism-perl all 0.45.0-1 [15.1 kB]
Get:47 http://ftpmaster.internal/ubuntu disco/main amd64 dh-strip-nondeterminism all 0.45.0-1 [5128 B]
Get:48 http://ftpmaster.internal/ubuntu disco/main amd64 dwz amd64 0.12-2 [77.7 kB]
Get:49 http://ftpmaster.internal/ubuntu disco/main amd64 libcroco3 amd64 0.6.12-2 [81.3 kB]
Get:50 http://ftpmaster.internal/ubuntu disco/main amd64 gettext amd64 0.19.8.1-9 [896 kB]
Get:51 http://ftpmaster.internal/ubuntu disco/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB]
Get:52 http://ftpmaster.internal/ubuntu disco/main amd64 po-debconf all 1.0.21 [233 kB]
Get:53 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 debhelper all 11.5.3ubuntu1 [888 kB]
Get:54 http://ftpmaster.internal/ubuntu disco/main amd64 zip amd64 3.0-11build1 [167 kB]
Get:55 http://ftpmaster.internal/ubuntu disco/main amd64 unzip amd64 6.0-21ubuntu1 [167 kB]
Get:56 http://ftpmaster.internal/ubuntu disco/main amd64 libpaper1 amd64 1.1.24+nmu5ubuntu1 [13.6 kB]
Get:57 http://ftpmaster.internal/ubuntu disco/main amd64 libpaper-utils amd64 1.1.24+nmu5ubuntu1 [8170 B]
Get:58 http://ftpmaster.internal/ubuntu disco/main amd64 xdg-utils all 1.1.3-1ubuntu2 [60.5 kB]
Get:59 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libblas3 amd64 3.8.0-2 [138 kB]
Get:60 http://ftpmaster.internal/ubuntu disco/main amd64 libfreetype6 amd64 2.8.1-2ubuntu2 [335 kB]
Get:61 http://ftpmaster.internal/ubuntu disco/main amd64 fonts-dejavu-core all 2.37-1 [1041 kB]
Get:62 http://ftpmaster.internal/ubuntu disco/main amd64 fontconfig-config all 2.13.0-5ubuntu3 [28.4 kB]
Get:63 http://ftpmaster.internal/ubuntu disco/main amd64 libfontconfig1 amd64 2.13.0-5ubuntu3 [112 kB]
Get:64 http://ftpmaster.internal/ubuntu disco/main amd64 libpixman-1-0 amd64 0.34.0-2 [229 kB]
Get:65 http://ftpmaster.internal/ubuntu disco/main amd64 libxcb-render0 amd64 1.13.1-1 [14.8 kB]
Get:66 http://ftpmaster.internal/ubuntu disco/main amd64 libxcb-shm0 amd64 1.13.1-1 [5548 B]
Get:67 http://ftpmaster.internal/ubuntu disco/main amd64 libxrender1 amd64 1:0.9.10-1 [18.7 kB]
Get:68 http://ftpmaster.internal/ubuntu disco/main amd64 libcairo2 amd64 1.16.0-1 [584 kB]
Get:69 http://ftpmaster.internal/ubuntu disco/main amd64 libroken18-heimdal amd64 7.5.0+dfsg-2.1 [41.4 kB]
Get:70 http://ftpmaster.internal/ubuntu disco/main amd64 libasn1-8-heimdal amd64 7.5.0+dfsg-2.1 [182 kB]
Get:71 http://ftpmaster.internal/ubuntu disco/main amd64 libheimbase1-heimdal amd64 7.5.0+dfsg-2.1 [29.4 kB]
Get:72 http://ftpmaster.internal/ubuntu disco/main amd64 libhcrypto4-heimdal amd64 7.5.0+dfsg-2.1 [86.7 kB]
Get:73 http://ftpmaster.internal/ubuntu disco/main amd64 libwind0-heimdal amd64 7.5.0+dfsg-2.1 [47.8 kB]
Get:74 http://ftpmaster.internal/ubuntu disco/main amd64 libhx509-5-heimdal amd64 7.5.0+dfsg-2.1 [107 kB]
Get:75 http://ftpmaster.internal/ubuntu disco/main amd64 libkrb5-26-heimdal amd64 7.5.0+dfsg-2.1 [206 kB]
Get:76 http://ftpmaster.internal/ubuntu disco/main amd64 libheimntlm0-heimdal amd64 7.5.0+dfsg-2.1 [14.8 kB]
Get:77 http://ftpmaster.internal/ubuntu disco/main amd64 libgssapi3-heimdal amd64 7.5.0+dfsg-2.1 [96.4 kB]
Get:78 http://ftpmaster.internal/ubuntu disco/main amd64 libsasl2-modules-db amd64 2.1.27~101-g0780600+dfsg-3ubuntu2 [14.8 kB]
Get:79 http://ftpmaster.internal/ubuntu disco/main amd64 libsasl2-2 amd64 2.1.27~101-g0780600+dfsg-3ubuntu2 [49.2 kB]
Get:80 http://ftpmaster.internal/ubuntu disco/main amd64 libldap-common all 2.4.46+dfsg-5ubuntu3 [16.0 kB]
Get:81 http://ftpmaster.internal/ubuntu disco/main amd64 libldap-2.4-2 amd64 2.4.46+dfsg-5ubuntu3 [154 kB]
Get:82 http://ftpmaster.internal/ubuntu disco/main amd64 libnghttp2-14 amd64 1.35.0-1 [78.9 kB]
Get:83 http://ftpmaster.internal/ubuntu disco/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [54.5 kB]
Get:84 http://ftpmaster.internal/ubuntu disco/main amd64 libcurl4 amd64 7.61.0-1ubuntu2.2 [217 kB]
Get:85 http://ftpmaster.internal/ubuntu disco/main amd64 libjpeg-turbo8 amd64 2.0.0-0ubuntu2 [117 kB]
Get:86 http://ftpmaster.internal/ubuntu disco/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B]
Get:87 http://ftpmaster.internal/ubuntu disco/main amd64 libgfortran5 amd64 8.2.0-10ubuntu1 [587 kB]
Get:88 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 liblapack3 amd64 3.8.0-2 [2099 kB]
Get:89 http://ftpmaster.internal/ubuntu disco/main amd64 fontconfig amd64 2.13.0-5ubuntu3 [170 kB]
Get:90 http://ftpmaster.internal/ubuntu disco/main amd64 libthai-data all 0.1.28-1 [134 kB]
Get:91 http://ftpmaster.internal/ubuntu disco/main amd64 libdatrie1 amd64 0.2.12-1 [18.3 kB]
Get:92 http://ftpmaster.internal/ubuntu disco/main amd64 libthai0 amd64 0.1.28-1 [18.0 kB]
Get:93 http://ftpmaster.internal/ubuntu disco/main amd64 libpango-1.0-0 amd64 1.42.4-4 [153 kB]
Get:94 http://ftpmaster.internal/ubuntu disco/main amd64 libgraphite2-3 amd64 1.3.12-1 [73.6 kB]
Get:95 http://ftpmaster.internal/ubuntu disco/main amd64 libharfbuzz0b amd64 2.1.1-1build1 [328 kB]
Get:96 http://ftpmaster.internal/ubuntu disco/main amd64 libpangoft2-1.0-0 amd64 1.42.4-4 [35.3 kB]
Get:97 http://ftpmaster.internal/ubuntu disco/main amd64 libpangocairo-1.0-0 amd64 1.42.4-4 [23.1 kB]
Get:98 http://ftpmaster.internal/ubuntu disco/main amd64 libtcl8.6 amd64 8.6.8+dfsg-4 [882 kB]
Get:99 http://ftpmaster.internal/ubuntu disco/main amd64 libjbig0 amd64 2.1-3.1build1 [26.7 kB]
Get:100 http://ftpmaster.internal/ubuntu disco/main amd64 libwebp6 amd64 0.6.1-2 [185 kB]
Get:101 http://ftpmaster.internal/ubuntu disco/main amd64 libtiff5 amd64 4.0.10-3 [157 kB]
Get:102 http://ftpmaster.internal/ubuntu disco/main amd64 libxft2 amd64 2.3.2-2 [38.5 kB]
Get:103 http://ftpmaster.internal/ubuntu disco/main amd64 libxss1 amd64 1:1.2.3-1 [8140 B]
Get:104 http://ftpmaster.internal/ubuntu disco/main amd64 libtk8.6 amd64 8.6.8-4 [693 kB]
Get:105 http://ftpmaster.internal/ubuntu disco/main amd64 libxt6 amd64 1:1.1.5-1 [160 kB]
Get:106 http://ftpmaster.internal/ubuntu disco/universe amd64 r-base-core amd64 3.5.1-2 [23.8 MB]
Get:107 http://ftpmaster.internal/ubuntu disco/main amd64 libgfortran-8-dev amd64 8.2.0-10ubuntu1 [621 kB]
Get:108 http://ftpmaster.internal/ubuntu disco/main amd64 gfortran-8 amd64 8.2.0-10ubuntu1 [7642 kB]
Get:109 http://ftpmaster.internal/ubuntu disco/main amd64 gfortran amd64 4:8.2.0-2ubuntu2 [1368 B]
Get:110 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libblas-dev amd64 3.8.0-2 [141 kB]
Get:111 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 liblapack-dev amd64 3.8.0-2 [2127 kB]
Get:112 http://ftpmaster.internal/ubuntu disco/main amd64 libncurses-dev amd64 6.1+20180210-4ubuntu1 [333 kB]
Get:113 http://ftpmaster.internal/ubuntu disco/main amd64 libncurses5-dev amd64 6.1+20180210-4ubuntu1 [972 B]
Get:114 http://ftpmaster.internal/ubuntu disco/main amd64 libreadline-dev amd64 7.0-5 [133 kB]
Get:115 http://ftpmaster.internal/ubuntu disco/main amd64 libjpeg-turbo8-dev amd64 2.0.0-0ubuntu2 [238 kB]
Get:116 http://ftpmaster.internal/ubuntu disco/main amd64 libjpeg8-dev amd64 8c-2ubuntu8 [1552 B]
Get:117 http://ftpmaster.internal/ubuntu disco/main amd64 libjpeg-dev amd64 8c-2ubuntu8 [1546 B]
Get:118 http://ftpmaster.internal/ubuntu disco/main amd64 libpcre16-3 amd64 2:8.39-11 [149 kB]
Get:119 http://ftpmaster.internal/ubuntu disco/main amd64 libpcre32-3 amd64 2:8.39-11 [140 kB]
Get:120 http://ftpmaster.internal/ubuntu disco/main amd64 libpcrecpp0v5 amd64 2:8.39-11 [15.7 kB]
Get:121 http://ftpmaster.internal/ubuntu disco/main amd64 libpcre3-dev amd64 2:8.39-11 [540 kB]
Get:122 http://ftpmaster.internal/ubuntu disco/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-0ubuntu2 [176 kB]
Get:123 http://ftpmaster.internal/ubuntu disco/main amd64 libpng-dev amd64 1.6.34-2 [177 kB]
Get:124 http://ftpmaster.internal/ubuntu disco/main amd64 libbz2-dev amd64 1.0.6-9 [30.2 kB]
Get:125 http://ftpmaster.internal/ubuntu disco/main amd64 liblzma-dev amd64 5.2.2-1.3 [145 kB]
Get:126 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 icu-devtools amd64 63.1-5 [183 kB]
Get:127 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libicu-dev amd64 63.1-5 [9178 kB]
Get:128 http://ftpmaster.internal/ubuntu disco/main amd64 pkg-config amd64 0.29.1-0ubuntu2 [45.0 kB]
Get:129 http://ftpmaster.internal/ubuntu disco/universe amd64 r-base-dev all 3.5.1-2 [4520 B]
Get:130 http://ftpmaster.internal/ubuntu disco/main amd64 libfile-which-perl all 1.22-1 [12.0 kB]
Get:131 http://ftpmaster.internal/ubuntu disco/universe amd64 libswitch-perl all 2.17-2 [18.8 kB]
Get:132 http://ftpmaster.internal/ubuntu disco/universe amd64 dh-r all 20181205 [31.9 kB]
Get:133 http://ftpmaster.internal/ubuntu disco/universe amd64 fonts-mathjax all 2.7.4+dfsg-1 [2208 kB]
Get:134 http://ftpmaster.internal/ubuntu disco/main amd64 libhttp-parser2.8 amd64 2.8.1-1 [20.8 kB]
Get:135 http://ftpmaster.internal/ubuntu disco/universe amd64 libjs-bootstrap all 3.3.7+dfsg-2 [228 kB]
Get:136 http://ftpmaster.internal/ubuntu disco/universe amd64 libjs-highlight.js all 9.12.0+dfsg1-4 [277 kB]
Get:137 http://ftpmaster.internal/ubuntu disco/main amd64 libjs-jquery all 3.2.1-1 [152 kB]
Get:138 http://ftpmaster.internal/ubuntu disco/universe amd64 libjs-jquery-datatables all 1.10.19+dfsg-1 [136 kB]
Get:139 http://ftpmaster.internal/ubuntu disco/main amd64 libuv1 amd64 1.24.0-1 [69.3 kB]
Get:140 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-littler amd64 0.3.5-1 [294 kB]
Get:141 http://ftpmaster.internal/ubuntu disco/universe amd64 littler all 0.3.5-1 [2768 B]
Get:142 http://ftpmaster.internal/ubuntu disco/main amd64 libc-ares2 amd64 1.14.0-1 [37.1 kB]
Get:143 http://ftpmaster.internal/ubuntu disco-proposed/universe amd64 nodejs amd64 8.11.4~dfsg-0ubuntu6 [5719 kB]
Get:144 http://ftpmaster.internal/ubuntu disco/universe amd64 node-highlight.js all 9.12.0+dfsg1-4 [215 kB]
Get:145 http://ftpmaster.internal/ubuntu disco/universe amd64 r-bioc-biocgenerics all 0.28.0-2 [644 kB]
Get:146 http://ftpmaster.internal/ubuntu disco/universe amd64 r-bioc-biobase amd64 2.42.0-1 [2214 kB]
Get:147 http://ftpmaster.internal/ubuntu disco/universe amd64 r-bioc-s4vectors amd64 0.20.1-2 [1814 kB]
Get:148 http://ftpmaster.internal/ubuntu disco/universe amd64 r-bioc-iranges amd64 2.16.0-1 [2129 kB]
Get:149 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-dbi all 1.0.0-2 [789 kB]
Get:150 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-bit amd64 1.1-14-1build1 [221 kB]
Get:151 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-bit64 amd64 0.9-7-3 [438 kB]
Get:152 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-magrittr all 1.5-5 [152 kB]
Get:153 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-assertthat all 0.2.0-2 [54.4 kB]
Get:154 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-prettyunits all 1.0.2-3 [32.7 kB]
Get:155 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-blob all 1.1.1-2 [25.1 kB]
Get:156 http://ftpmaster.internal/ubuntu disco-proposed/universe amd64 r-cran-digest amd64 0.6.18-1 [130 kB]
Get:157 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-memoise all 1.1.0-2 [38.8 kB]
Get:158 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-pkgconfig all 2.0.2-1 [19.5 kB]
Get:159 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-pkgkitten all 0.1.4-2 [21.6 kB]
Get:160 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-rcpp amd64 1.0.0-1 [3295 kB]
Get:161 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-rsqlite amd64 2.1.1-2build1 [856 kB]
Get:162 http://ftpmaster.internal/ubuntu disco/universe amd64 r-bioc-annotationdbi all 1.44.0-1 [4631 kB]
Get:163 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-bitops amd64 1.0-6-4 [23.5 kB]
Get:164 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-rcurl amd64 1.95-4.11-1 [714 kB]
Get:165 http://ftpmaster.internal/ubuntu disco/universe amd64 r-bioc-genomeinfodbdata all 1.2.0-1 [9196 kB]
Get:166 http://ftpmaster.internal/ubuntu disco/universe amd64 r-bioc-genomeinfodb all 1.18.1-1 [3691 kB]
Get:167 http://ftpmaster.internal/ubuntu disco/universe amd64 r-bioc-xvector amd64 0.22.0-1 [603 kB]
Get:168 http://ftpmaster.internal/ubuntu disco/universe amd64 r-bioc-genomicranges amd64 1.34.0+dfsg-1 [1766 kB]
Get:169 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-lazyeval amd64 0.2.1-3 [139 kB]
Get:170 http://ftpmaster.internal/ubuntu disco/universe amd64 r-bioc-annotationfilter all 1.6.0+dfsg-1 [192 kB]
Get:171 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-formatr all 1.5-3 [144 kB]
Get:172 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-lambda.r all 1.2.3-2 [117 kB]
Get:173 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-futile.options all 1.0.1-2 [19.8 kB]
Get:174 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-futile.logger all 1.4.3-3 [102 kB]
Get:175 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-snow all 1:0.4.3-1 [107 kB]
Get:176 http://ftpmaster.internal/ubuntu disco/universe amd64 r-bioc-biocparallel amd64 1.16.2-1 [1060 kB]
Get:177 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-xml amd64 3.98-1.16-1 [1925 kB]
Get:178 http://ftpmaster.internal/ubuntu disco-proposed/universe amd64 r-cran-rlang amd64 0.3.0.1-1 [1029 kB]
Get:179 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-hms all 0.4.2-2 [58.9 kB]
Get:180 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-r6 all 2.3.0-1 [73.7 kB]
Get:181 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-crayon all 1.3.4-4ubuntu1 [499 kB]
Get:182 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-progress all 1.2.0-1 [78.5 kB]
Get:183 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-glue amd64 1.3.0-1 [91.4 kB]
Get:184 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-stringi amd64 1.2.4-1ubuntu2 [8682 kB]
Get:185 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-stringr all 1.3.1-2 [175 kB]
Get:186 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-jsonlite amd64 1.5-3 [636 kB]
Get:187 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-mime amd64 0.6-1 [34.9 kB]
Get:188 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-curl amd64 3.2-2ubuntu2 [364 kB]
Get:189 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-openssl amd64 1.0.2+dfsg-1ubuntu1 [344 kB]
Get:190 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-httr all 1.3.1-2 [430 kB]
Get:191 http://ftpmaster.internal/ubuntu disco/universe amd64 r-bioc-biomart all 2.38.0+dfsg-1 [262 kB]
Get:192 http://ftpmaster.internal/ubuntu disco/universe amd64 r-bioc-biostrings amd64 2.50.1-1 [14.1 MB]
Get:193 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-labeling all 0.3-3 [61.5 kB]
Get:194 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-colorspace amd64 1.3-2-3 [474 kB]
Get:195 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-munsell all 0.5.0-1 [206 kB]
Get:196 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-rcolorbrewer all 1.1-2-2 [54.4 kB]
Get:197 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-viridislite all 0.3.0-3 [58.9 kB]
Get:198 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-scales amd64 1.0.0-2 [460 kB]
Get:199 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-lattice amd64 0.20-38-1 [1111 kB]
Get:200 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-matrix amd64 1.2-15-1 [3363 kB]
Get:201 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-survival amd64 2.43-3-1 [4635 kB]
Get:202 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-formula all 1.2-3-2 [178 kB]
Get:203 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-gtable all 0.2.0-3 [93.5 kB]
Get:204 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-mass amd64 7.3-51.1-1 [1103 kB]
Get:205 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-nlme amd64 3.1.137-1build1 [2203 kB]
Get:206 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-mgcv amd64 1.8-26-1 [2538 kB]
Get:207 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-plyr amd64 1.8.4-2 [813 kB]
Get:208 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-reshape2 amd64 1.4.3-2 [114 kB]
Get:209 http://ftpmaster.internal/ubuntu disco-proposed/universe amd64 r-cran-cli all 1.0.1-1 [428 kB]
Get:210 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-fansi amd64 0.4.0-1 [339 kB]
Get:211 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-utf8 amd64 1.1.4-1build1 [130 kB]
Get:212 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-pillar all 1.3.0-1 [199 kB]
Get:213 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-tibble amd64 1.4.2-3 [226 kB]
Get:214 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-withr all 2.1.2-3 [153 kB]
Get:215 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-ggplot2 all 3.1.0-1 [3718 kB]
Get:216 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-latticeextra amd64 0.6-28-2build2 [2181 kB]
Get:217 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-cluster amd64 2.0.7-1-1build1 [514 kB]
Get:218 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-rpart amd64 4.1-13-1build1 [881 kB]
Get:219 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-nnet amd64 7.3-12-2build2 [110 kB]
Get:220 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-acepack amd64 1.4.1-2build2 [59.6 kB]
Get:221 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-foreign amd64 0.8.71-1 [230 kB]
Get:222 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-gridextra all 2.3-2 [1023 kB]
Get:223 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-data.table amd64 1.11.8+dfsg-1 [1311 kB]
Get:224 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-evaluate all 0.12-1 [77.6 kB]
Get:225 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-highr all 0.7+dfsg-1 [39.7 kB]
Get:226 http://ftpmaster.internal/ubuntu disco/universe amd64 libjs-mathjax all 2.7.4+dfsg-1 [5654 kB]
Get:227 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-markdown amd64 0.8+dfsg-1 [125 kB]
Get:228 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-yaml amd64 2.2.0-1 [98.3 kB]
Get:229 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-knitr all 1.20+dfsg-1 [809 kB]
Get:230 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-backports amd64 1.1.2-2 [44.5 kB]
Get:231 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-checkmate amd64 1.8.5-2 [512 kB]
Get:232 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-htmltools amd64 0.3.6-2 [170 kB]
Get:233 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-htmlwidgets all 1.3+dfsg-1 [111 kB]
Get:234 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-rstudioapi all 0.8-1 [143 kB]
Get:235 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-bindr all 0.1.1-2 [18.2 kB]
Get:236 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-bindrcpp amd64 0.2.2-2 [71.5 kB]
Get:237 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-purrr amd64 0.2.5-1build1 [262 kB]
Get:238 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-tidyselect amd64 0.2.5-1 [117 kB]
Get:239 http://ftpmaster.internal/ubuntu disco-proposed/universe amd64 r-cran-dplyr amd64 0.7.8-1 [1689 kB]
Get:240 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-tidyr amd64 0.8.2-1 [416 kB]
Get:241 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-htmltable all 1.12-2 [293 kB]
Get:242 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-viridis all 0.5.1-2 [1828 kB]
Get:243 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-base64enc amd64 0.1-3-2 [27.4 kB]
Get:244 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-chron amd64 2.3-53-1 [186 kB]
Get:245 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-hmisc amd64 4.1-1-3 [2945 kB]
Get:246 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-dichromat all 1:2.0-0-2 [148 kB]
Get:247 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-matrixstats amd64 0.54.0-1 [621 kB]
Get:248 http://ftpmaster.internal/ubuntu disco/universe amd64 r-bioc-delayedarray amd64 0.8.0+dfsg-1 [1281 kB]
Get:249 http://ftpmaster.internal/ubuntu disco/universe amd64 r-bioc-summarizedexperiment all 1.12.0+dfsg-1 [1885 kB]
Get:250 http://ftpmaster.internal/ubuntu disco/universe amd64 r-bioc-rsamtools amd64 1.34.0-1 [3533 kB]
Get:251 http://ftpmaster.internal/ubuntu disco/universe amd64 r-bioc-genomicalignments amd64 1.18.0-1 [2100 kB]
Get:252 http://ftpmaster.internal/ubuntu disco/universe amd64 r-bioc-rtracklayer amd64 1.42.1-1 [2427 kB]
Get:253 http://ftpmaster.internal/ubuntu disco/universe amd64 r-bioc-genomicfeatures all 1.34.1+dfsg-1 [1554 kB]
Get:254 http://ftpmaster.internal/ubuntu disco/universe amd64 r-bioc-bsgenome all 1.50.0-1 [6994 kB]
Get:255 http://ftpmaster.internal/ubuntu disco/universe amd64 r-bioc-variantannotation amd64 1.28.3-1 [2992 kB]
Get:256 http://ftpmaster.internal/ubuntu disco/universe amd64 r-bioc-protgenerics all 1.14.0-1 [30.7 kB]
Get:257 http://ftpmaster.internal/ubuntu disco/universe amd64 r-bioc-ensembldb all 2.6.3+dfsg-1 [1443 kB]
Get:258 http://ftpmaster.internal/ubuntu disco-proposed/universe amd64 r-bioc-biovizbase amd64 1.30.0-1 [2776 kB]
Get:259 http://ftpmaster.internal/ubuntu disco/universe amd64 r-bioc-gviz all 1.26.3-1 [5005 kB]
Get:260 http://ftpmaster.internal/ubuntu disco/universe amd64 r-cran-fastcluster amd64 1.1.25-2 [185 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Creating config file /etc/R/Renviron with new version
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Setting up r-cran-lambda.r (1.2.3-2) ...
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Setting up r-cran-matrixstats (0.54.0-1) ...
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Setting up r-cran-chron (2.3-53-1) ...
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Setting up r-cran-formula (1.2-3-2) ...
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Setting up r-cran-lazyeval (0.2.1-3) ...
Setting up r-cran-latticeextra (0.6-28-2build2) ...
Setting up r-cran-nlme (3.1.137-1build1) ...
Setting up r-cran-backports (1.1.2-2) ...
Setting up r-bioc-genomeinfodbdata (1.2.0-1) ...
Setting up r-cran-foreign (0.8.71-1) ...
Setting up r-cran-stringr (1.3.1-2) ...
Setting up r-cran-prettyunits (1.0.2-3) ...
Setting up r-cran-htmltools (0.3.6-2) ...
Setting up r-cran-markdown (0.8+dfsg-1) ...
Setting up r-cran-hms (0.4.2-2) ...
Setting up r-cran-munsell (0.5.0-1) ...
Setting up r-cran-htmlwidgets (1.3+dfsg-1) ...
Setting up r-cran-blob (1.1.1-2) ...
Setting up r-cran-pillar (1.3.0-1) ...
Setting up r-cran-futile.logger (1.4.3-3) ...
Setting up r-cran-reshape2 (1.4.3-2) ...
Setting up r-cran-rsqlite (2.1.1-2build1) ...
Setting up r-cran-httr (1.3.1-2) ...
Setting up r-bioc-iranges (2.16.0-1) ...
Setting up r-cran-scales (1.0.0-2) ...
Setting up r-cran-tibble (1.4.2-3) ...
Setting up r-bioc-biocparallel (1.16.2-1) ...
Setting up r-cran-progress (1.2.0-1) ...
Setting up r-cran-matrix (1.2-15-1) ...
Setting up r-bioc-delayedarray (0.8.0+dfsg-1) ...
Setting up r-bioc-genomeinfodb (1.18.1-1) ...
Setting up r-cran-checkmate (1.8.5-2) ...
Setting up r-cran-knitr (1.20+dfsg-1) ...
Setting up r-bioc-xvector (0.22.0-1) ...
Setting up r-cran-purrr (0.2.5-1build1) ...
Setting up r-cran-mgcv (1.8-26-1) ...
Setting up r-bioc-biostrings (2.50.1-1) ...
Setting up r-bioc-annotationdbi (1.44.0-1) ...
Setting up r-cran-ggplot2 (3.1.0-1) ...
Setting up r-cran-survival (2.43-3-1) ...
Setting up r-bioc-genomicranges (1.34.0+dfsg-1) ...
Setting up r-cran-tidyselect (0.2.5-1) ...
Setting up r-bioc-summarizedexperiment (1.12.0+dfsg-1) ...
Setting up r-bioc-biomart (2.38.0+dfsg-1) ...
Setting up r-cran-viridis (0.5.1-2) ...
Setting up r-cran-rpart (4.1-13-1build1) ...
Setting up r-cran-dplyr (0.7.8-1) ...
Setting up r-bioc-rsamtools (1.34.0-1) ...
Setting up r-bioc-annotationfilter (1.6.0+dfsg-1) ...
Setting up r-bioc-genomicalignments (1.18.0-1) ...
Setting up r-cran-tidyr (0.8.2-1) ...
Setting up r-bioc-rtracklayer (1.42.1-1) ...
Setting up r-bioc-genomicfeatures (1.34.1+dfsg-1) ...
Setting up r-cran-htmltable (1.12-2) ...
Setting up r-bioc-bsgenome (1.50.0-1) ...
Setting up r-bioc-ensembldb (2.6.3+dfsg-1) ...
Setting up r-cran-hmisc (4.1-1-3) ...
Setting up r-bioc-variantannotation (1.28.3-1) ...
Setting up r-bioc-biovizbase (1.30.0-1) ...
Setting up r-bioc-gviz (1.26.3-1) ...
Setting up dh-autoreconf (19) ...
Setting up dh-strip-nondeterminism (0.45.0-1) ...
Setting up debhelper (11.5.3ubuntu1) ...
Setting up dh-r (20181205) ...
Setting up sbuild-build-depends-r-bioc-cummerbund-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.28-0ubuntu1) ...
Processing triggers for systemd (239-7ubuntu15) ...

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.4.0-139-generic amd64 (x86_64)
Toolchain package versions: binutils_2.31.1-10ubuntu1 dpkg-dev_1.19.2ubuntu1 g++-8_8.2.0-10ubuntu1 gcc-8_8.2.0-10ubuntu1 libc6-dev_2.28-0ubuntu1 libstdc++-8-dev_8.2.0-10ubuntu1 libstdc++6_8.2.0-10ubuntu1 linux-libc-dev_4.19.0-7.8
Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.8.0~alpha2ubuntu1 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1ubuntu8 base-passwd_3.5.45 bash_4.4.18-2ubuntu3 binutils_2.31.1-10ubuntu1 binutils-common_2.31.1-10ubuntu1 binutils-x86-64-linux-gnu_2.31.1-10ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu2 build-essential_12.5ubuntu2 bzip2_1.0.6-9 ca-certificates_20180409 coreutils_8.28-1ubuntu2 cpp_4:8.2.0-2ubuntu2 cpp-8_8.2.0-10ubuntu1 dash_0.5.10.2-1 dctrl-tools_2.24-3 debconf_1.5.69 debhelper_11.5.3ubuntu1 debianutils_4.8.6 dh-autoreconf_19 dh-r_20181205 dh-strip-nondeterminism_0.45.0-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu4 dpkg_1.19.2ubuntu1 dpkg-dev_1.19.2ubuntu1 dwz_0.12-2 e2fslibs_1.44.4-2 e2fsprogs_1.44.4-2 fakeroot_1.23-1 fdisk_2.32-0.1ubuntu2 file_1:5.34-2 findutils_4.6.0+git+20181018-1 fontconfig_2.13.0-5ubuntu3 fontconfig-config_2.13.0-5ubuntu3 fonts-dejavu-core_2.37-1 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libbz2-dev_1.0.6-9 libc-ares2_1.14.0-1 libc-bin_2.28-0ubuntu1 libc-dev-bin_2.28-0ubuntu1 libc6_2.28-0ubuntu1 libc6-dev_2.28-0ubuntu1 libcairo2_1.16.0-1 libcap-ng0_0.7.9-1build1 libcap2_1:2.25-1.2 libcc1-0_8.2.0-10ubuntu1 libcom-err2_1.44.4-2 libcomerr2_1.44.4-2 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.4-2ubuntu2 libcurl4_7.61.0-1ubuntu2.2 libdatrie1_0.2.12-1 libdb5.3_5.3.28+dfsg1-0.2 libdebconfclient0_0.244ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu4 libdpkg-perl_1.19.2ubuntu1 libelf1_0.175-1 libexpat1_2.2.6-1 libext2fs2_1.44.4-2 libfakeroot_1.23-1 libfdisk1_2.32-0.1ubuntu2 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_0.45.0-1 libfile-which-perl_1.22-1 libfontconfig1_2.13.0-5ubuntu3 libfreetype6_2.8.1-2ubuntu2 libfribidi0_1.0.5-3 libgcc-8-dev_8.2.0-10ubuntu1 libgcc1_1:8.2.0-10ubuntu1 libgcrypt20_1.8.4-3ubuntu1 libgdbm-compat4_1.18.1-2 libgdbm5_1.14.1-6 libgdbm6_1.18.1-2 libgfortran-8-dev_8.2.0-10ubuntu1 libgfortran5_8.2.0-10ubuntu1 libglib2.0-0_2.58.1-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.4-2ubuntu2 libgomp1_8.2.0-10ubuntu1 libgpg-error0_1.32-3 libgraphite2-3_1.3.12-1 libgssapi-krb5-2_1.16.1-1ubuntu1 libgssapi3-heimdal_7.5.0+dfsg-2.1 libharfbuzz0b_2.1.1-1build1 libhcrypto4-heimdal_7.5.0+dfsg-2.1 libheimbase1-heimdal_7.5.0+dfsg-2.1 libheimntlm0-heimdal_7.5.0+dfsg-2.1 libhogweed4_3.4.1~rc1-1 libhttp-parser2.8_2.8.1-1 libhx509-5-heimdal_7.5.0+dfsg-2.1 libice6_2:1.0.9-2 libicu-dev_63.1-5 libicu63_63.1-5 libidn11_1.33-2.2ubuntu1 libidn2-0_2.0.5-1 libip4tc0_1.6.1-2ubuntu2 libisl19_0.20-2 libitm1_8.2.0-10ubuntu1 libjbig0_2.1-3.1build1 libjpeg-dev_8c-2ubuntu8 libjpeg-turbo8_2.0.0-0ubuntu2 libjpeg-turbo8-dev_2.0.0-0ubuntu2 libjpeg8_8c-2ubuntu8 libjpeg8-dev_8c-2ubuntu8 libjs-bootstrap_3.3.7+dfsg-2 libjs-highlight.js_9.12.0+dfsg1-4 libjs-jquery_3.2.1-1 libjs-jquery-datatables_1.10.19+dfsg-1 libjs-mathjax_2.7.4+dfsg-1 libjson-c3_0.12.1-1.3 libk5crypto3_1.16.1-1ubuntu1 libkeyutils1_1.5.9-9.3 libkmod2_25-1ubuntu2 libkrb5-26-heimdal_7.5.0+dfsg-2.1 libkrb5-3_1.16.1-1ubuntu1 libkrb5support0_1.16.1-1ubuntu1 liblapack-dev_3.8.0-2 liblapack3_3.8.0-2 libldap-2.4-2_2.4.46+dfsg-5ubuntu3 libldap-common_2.4.46+dfsg-5ubuntu3 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblsan0_8.2.0-10ubuntu1 liblz4-1_1.8.2-1ubuntu1 liblzma-dev_5.2.2-1.3 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmount1_2.32-0.1ubuntu2 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libmpx2_8.2.0-10ubuntu1 libncurses-dev_6.1+20180210-4ubuntu1 libncurses5-dev_6.1+20180210-4ubuntu1 libncurses6_6.1+20180210-4ubuntu1 libncursesw6_6.1+20180210-4ubuntu1 libnettle6_3.4.1~rc1-1 libnghttp2-14_1.35.0-1 libnpth0_1.6-1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpango-1.0-0_1.42.4-4 libpangocairo-1.0-0_1.42.4-4 libpangoft2-1.0-0_1.42.4-4 libpaper-utils_1.1.24+nmu5ubuntu1 libpaper1_1.1.24+nmu5ubuntu1 libpcre16-3_2:8.39-11 libpcre3_2:8.39-11 libpcre3-dev_2:8.39-11 libpcre32-3_2:8.39-11 libpcrecpp0v5_2:8.39-11 libperl5.26_5.26.2-7 libperl5.28_5.28.1-2 libpipeline1_1.5.0-2 libpixman-1-0_0.34.0-2 libpng-dev_1.6.34-2 libpng16-16_1.6.34-2 libprocps7_2:3.3.15-2ubuntu1 libpsl5_0.20.2-2 libquadmath0_8.2.0-10ubuntu1 libreadline-dev_7.0-5 libreadline7_7.0-5 libroken18-heimdal_7.5.0+dfsg-2.1 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27~101-g0780600+dfsg-3ubuntu2 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3ubuntu2 libseccomp2_2.3.3-3ubuntu2 libselinux1_2.8-1build2 libsemanage-common_2.8-1build2 libsemanage1_2.8-1build2 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsm6_2:1.2.2-1 libsmartcols1_2.32-0.1ubuntu2 libsqlite3-0_3.26.0-1 libss2_1.44.4-2 libssl1.1_1.1.1a-1ubuntu2 libstdc++-8-dev_8.2.0-10ubuntu1 libstdc++6_8.2.0-10ubuntu1 libswitch-perl_2.17-2 libsystemd0_239-7ubuntu15 libtasn1-6_4.13-3 libtcl8.6_8.6.8+dfsg-4 libthai-data_0.1.28-1 libthai0_0.1.28-1 libtiff5_4.0.10-3 libtinfo6_6.1+20180210-4ubuntu1 libtk8.6_8.6.8-4 libtool_2.4.6-6 libtsan0_8.2.0-10ubuntu1 libubsan1_8.2.0-10ubuntu1 libudev1_239-7ubuntu15 libunistring2_0.9.10-1ubuntu1 libusb-0.1-4_2:0.1.12-32 libuuid1_2.32-0.1ubuntu2 libuv1_1.24.0-1 libwebp6_0.6.1-2 libwind0-heimdal_7.5.0+dfsg-2.1 libx11-6_2:1.6.7-1 libx11-data_2:1.6.7-1 libxau6_1:1.0.8-1 libxcb-render0_1.13.1-1 libxcb-shm0_1.13.1-1 libxcb1_1.13.1-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1 libxft2_2.3.2-2 libxml2_2.9.4+dfsg1-7ubuntu3 libxmuu1_2:1.1.2-2 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.1.5-1 libzstd1_1.3.5+dfsg-1ubuntu1 linux-libc-dev_4.19.0-7.8 littler_0.3.5-1 lockfile-progs_0.1.18 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.4-3 mawk_1.3.3-17ubuntu3 mount_2.32-0.1ubuntu2 multiarch-support_2.28-0ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 node-highlight.js_9.12.0+dfsg1-4 node-normalize.css_8.0.1-1 nodejs_8.11.4~dfsg-0ubuntu6 openssl_1.1.1a-1ubuntu2 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-3 perl_5.28.1-2 perl-base_5.28.1-2 perl-modules-5.26_5.26.2-7 perl-modules-5.28_5.28.1-2 pinentry-curses_1.1.0-1build2 pkg-config_0.29.1-0ubuntu2 pkgbinarymangler_143 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 r-base-core_3.5.1-2 r-base-dev_3.5.1-2 r-bioc-annotationdbi_1.44.0-1 r-bioc-annotationfilter_1.6.0+dfsg-1 r-bioc-biobase_2.42.0-1 r-bioc-biocgenerics_0.28.0-2 r-bioc-biocparallel_1.16.2-1 r-bioc-biomart_2.38.0+dfsg-1 r-bioc-biostrings_2.50.1-1 r-bioc-biovizbase_1.30.0-1 r-bioc-bsgenome_1.50.0-1 r-bioc-delayedarray_0.8.0+dfsg-1 r-bioc-ensembldb_2.6.3+dfsg-1 r-bioc-genomeinfodb_1.18.1-1 r-bioc-genomeinfodbdata_1.2.0-1 r-bioc-genomicalignments_1.18.0-1 r-bioc-genomicfeatures_1.34.1+dfsg-1 r-bioc-genomicranges_1.34.0+dfsg-1 r-bioc-gviz_1.26.3-1 r-bioc-iranges_2.16.0-1 r-bioc-protgenerics_1.14.0-1 r-bioc-rsamtools_1.34.0-1 r-bioc-rtracklayer_1.42.1-1 r-bioc-s4vectors_0.20.1-2 r-bioc-summarizedexperiment_1.12.0+dfsg-1 r-bioc-variantannotation_1.28.3-1 r-bioc-xvector_0.22.0-1 r-cran-acepack_1.4.1-2build2 r-cran-assertthat_0.2.0-2 r-cran-backports_1.1.2-2 r-cran-base64enc_0.1-3-2 r-cran-bindr_0.1.1-2 r-cran-bindrcpp_0.2.2-2 r-cran-bit_1.1-14-1build1 r-cran-bit64_0.9-7-3 r-cran-bitops_1.0-6-4 r-cran-blob_1.1.1-2 r-cran-checkmate_1.8.5-2 r-cran-chron_2.3-53-1 r-cran-cli_1.0.1-1 r-cran-cluster_2.0.7-1-1build1 r-cran-colorspace_1.3-2-3 r-cran-crayon_1.3.4-4ubuntu1 r-cran-curl_3.2-2ubuntu2 r-cran-data.table_1.11.8+dfsg-1 r-cran-dbi_1.0.0-2 r-cran-dichromat_1:2.0-0-2 r-cran-digest_0.6.18-1 r-cran-dplyr_0.7.8-1 r-cran-evaluate_0.12-1 r-cran-fansi_0.4.0-1 r-cran-fastcluster_1.1.25-2 r-cran-foreign_0.8.71-1 r-cran-formatr_1.5-3 r-cran-formula_1.2-3-2 r-cran-futile.logger_1.4.3-3 r-cran-futile.options_1.0.1-2 r-cran-ggplot2_3.1.0-1 r-cran-glue_1.3.0-1 r-cran-gridextra_2.3-2 r-cran-gtable_0.2.0-3 r-cran-highr_0.7+dfsg-1 r-cran-hmisc_4.1-1-3 r-cran-hms_0.4.2-2 r-cran-htmltable_1.12-2 r-cran-htmltools_0.3.6-2 r-cran-htmlwidgets_1.3+dfsg-1 r-cran-httr_1.3.1-2 r-cran-jsonlite_1.5-3 r-cran-knitr_1.20+dfsg-1 r-cran-labeling_0.3-3 r-cran-lambda.r_1.2.3-2 r-cran-lattice_0.20-38-1 r-cran-latticeextra_0.6-28-2build2 r-cran-lazyeval_0.2.1-3 r-cran-littler_0.3.5-1 r-cran-magrittr_1.5-5 r-cran-markdown_0.8+dfsg-1 r-cran-mass_7.3-51.1-1 r-cran-matrix_1.2-15-1 r-cran-matrixstats_0.54.0-1 r-cran-memoise_1.1.0-2 r-cran-mgcv_1.8-26-1 r-cran-mime_0.6-1 r-cran-munsell_0.5.0-1 r-cran-nlme_3.1.137-1build1 r-cran-nnet_7.3-12-2build2 r-cran-openssl_1.0.2+dfsg-1ubuntu1 r-cran-pillar_1.3.0-1 r-cran-pkgconfig_2.0.2-1 r-cran-pkgkitten_0.1.4-2 r-cran-plyr_1.8.4-2 r-cran-prettyunits_1.0.2-3 r-cran-progress_1.2.0-1 r-cran-purrr_0.2.5-1build1 r-cran-r6_2.3.0-1 r-cran-rcolorbrewer_1.1-2-2 r-cran-rcpp_1.0.0-1 r-cran-rcurl_1.95-4.11-1 r-cran-reshape2_1.4.3-2 r-cran-rlang_0.3.0.1-1 r-cran-rpart_4.1-13-1build1 r-cran-rsqlite_2.1.1-2build1 r-cran-rstudioapi_0.8-1 r-cran-scales_1.0.0-2 r-cran-snow_1:0.4.3-1 r-cran-stringi_1.2.4-1ubuntu2 r-cran-stringr_1.3.1-2 r-cran-survival_2.43-3-1 r-cran-tibble_1.4.2-3 r-cran-tidyr_0.8.2-1 r-cran-tidyselect_0.2.5-1 r-cran-utf8_1.1.4-1build1 r-cran-viridis_0.5.1-2 r-cran-viridislite_0.3.0-3 r-cran-withr_2.1.2-3 r-cran-xml_3.98-1.16-1 r-cran-yaml_2.2.0-1 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-cummerbund-dummy_0.invalid.0 sed_4.5-2 sensible-utils_0.0.12 systemd_239-7ubuntu15 systemd-sysv_239-7ubuntu15 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu2 tar_1.30+dfsg-3 tzdata_2018g-1 ubuntu-keyring_2018.09.18.1 ucf_3.0038 unzip_6.0-21ubuntu1 util-linux_2.32-0.1ubuntu2 x11-common_1:7.7+19ubuntu8 xauth_1:1.0.10-1 xdg-utils_1.1.3-1ubuntu2 xz-utils_5.2.2-1.3 zip_3.0-11build1 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: Signature made Wed Dec  5 12:09:34 2018 UTC
gpgv:                using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-cummerbund_2.24.0-2.dsc
dpkg-source: info: extracting r-bioc-cummerbund in r-bioc-cummerbund-2.24.0
dpkg-source: info: unpacking r-bioc-cummerbund_2.24.0.orig.tar.gz
dpkg-source: info: unpacking r-bioc-cummerbund_2.24.0-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying vignette-local-files.patch

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=C.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-15742214
SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-15742214
SCHROOT_COMMAND=env
SCHROOT_GID=2501
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=build-PACKAGEBUILD-15742214
SCHROOT_UID=2001
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=unknown
USER=buildd
V=1

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package r-bioc-cummerbund
dpkg-buildpackage: info: source version 2.24.0-2
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
 fakeroot debian/rules clean
dh clean --buildsystem R
   dh_auto_clean -O--buildsystem=R
   dh_autoreconf_clean -O--buildsystem=R
   dh_clean -O--buildsystem=R
 debian/rules build
make: 'build' is up to date.
 fakeroot debian/rules binary
dh binary --buildsystem R
   dh_update_autotools_config -O--buildsystem=R
   dh_autoreconf -O--buildsystem=R
   dh_auto_configure -O--buildsystem=R
   dh_auto_build -O--buildsystem=R
   dh_auto_test -O--buildsystem=R
   create-stamp debian/debhelper-build-stamp
   dh_testroot -O--buildsystem=R
   dh_prep -O--buildsystem=R
   dh_installdirs -O--buildsystem=R
   dh_auto_install -O--buildsystem=R
I: R packages needed for DEP8: 
I: R Package: cummeRbund Version: 2.24.0
I: Building using R version 3.5.1-2
I: R API version: r-api-3.5
I: Using built-time from d/changelog: Wed, 05 Dec 2018 12:02:13 +0000
	mkdir -p /<<PKGBUILDDIR>>/debian/r-bioc-cummerbund/usr/lib/R/site-library
	R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-cummerbund/usr/lib/R/site-library --clean . "--built-timestamp='Wed, 05 Dec 2018 12:02:13 +0000'"
* installing *source* package ‘cummeRbund’ ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (cummeRbund)
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 292.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 293.
Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 296.
W: Ignoring specified R dependency: R (>= 2.7.0)
I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.3.2)
I: Using r-cran-rsqlite for Depends:RSQLite
I: Using r-cran-ggplot2 for Depends:ggplot2
I: Using r-cran-reshape2 for Depends:reshape2
I: Using r-cran-fastcluster for Depends:fastcluster
I: Using r-bioc-rtracklayer for Depends:rtracklayer
I: Using r-bioc-gviz for Depends:Gviz
I: Using r-cran-cluster for Suggests:cluster
I: Using r-cran-plyr for Suggests:plyr
W: Cannot find a debian package for Suggests:NMFN
I: Using r-cran-stringr for Suggests:stringr
I: Using r-bioc-genomicfeatures for Suggests:GenomicFeatures
I: Using r-bioc-genomicranges for Suggests:GenomicRanges
I: Using r-cran-rjson for Suggests:rjson
I: Using r-cran-plyr for Imports:plyr
I: Using r-bioc-biocgenerics for Imports:BiocGenerics
I: Using r-bioc-s4vectors for Imports:S4Vectors (>= 0.9.25)
I: Using r-bioc-biobase for Imports:Biobase
I: BioConductor API version: r-api-bioc-3.8
Create lintian-override for package-contains-documentation-outside-usr-share-doc
   dh_install -O--buildsystem=R
   dh_installdocs -O--buildsystem=R
   dh_installchangelogs -O--buildsystem=R
   dh_installexamples -O--buildsystem=R
   dh_installman -O--buildsystem=R
   dh_installcatalogs -O--buildsystem=R
   dh_installcron -O--buildsystem=R
   dh_installdebconf -O--buildsystem=R
   dh_installemacsen -O--buildsystem=R
   dh_installifupdown -O--buildsystem=R
   dh_installinfo -O--buildsystem=R
   dh_installinit -O--buildsystem=R
   dh_installsystemd -O--buildsystem=R
   dh_installmenu -O--buildsystem=R
   dh_installmime -O--buildsystem=R
   dh_installmodules -O--buildsystem=R
   dh_installlogcheck -O--buildsystem=R
   dh_installlogrotate -O--buildsystem=R
   dh_installpam -O--buildsystem=R
   dh_installppp -O--buildsystem=R
   dh_installudev -O--buildsystem=R
   dh_installgsettings -O--buildsystem=R
   dh_bugfiles -O--buildsystem=R
   dh_ucf -O--buildsystem=R
   dh_lintian -O--buildsystem=R
   dh_gconf -O--buildsystem=R
dh_gconf: Please migrate to dh_installgsettings; gconf + dh_gconf is scheduled for removal.
   dh_icons -O--buildsystem=R
   dh_perl -O--buildsystem=R
   dh_usrlocal -O--buildsystem=R
   dh_link -O--buildsystem=R
   dh_installwm -O--buildsystem=R
   dh_installxfonts -O--buildsystem=R
   dh_strip_nondeterminism -O--buildsystem=R
   dh_compress -O--buildsystem=R
   dh_fixperms -O--buildsystem=R
   dh_missing -O--buildsystem=R
   dh_installdeb -O--buildsystem=R
   dh_gencontrol -O--buildsystem=R
   dh_md5sums -O--buildsystem=R
   dh_builddeb -O--buildsystem=R
INFO: pkgstriptranslations version 143
pkgstriptranslations: processing r-bioc-cummerbund (in debian/r-bioc-cummerbund); do_strip: , oemstrip: 
pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>"
pkgstripfiles: processing control file: debian/r-bioc-cummerbund/DEBIAN/control, package r-bioc-cummerbund, directory debian/r-bioc-cummerbund
pkgstripfiles: Truncating usr/share/doc/r-bioc-cummerbund/changelog.Debian.gz to topmost ten records
pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-bioc-cummerbund ...
pkgstripfiles: No PNG files.
dpkg-deb: building package 'r-bioc-cummerbund' in '../r-bioc-cummerbund_2.24.0-2_all.deb'.
 dpkg-genbuildinfo --build=binary
 dpkg-genchanges --build=binary -mLaunchpad Build Daemon <buildd@lgw01-amd64-019.buildd> >../r-bioc-cummerbund_2.24.0-2_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 20181205-1739

Finished
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I: Built successfully

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r-bioc-cummerbund_2.24.0-2_amd64.changes:
-----------------------------------------

Format: 1.8
Date: Wed, 05 Dec 2018 12:02:13 +0000
Source: r-bioc-cummerbund
Binary: r-bioc-cummerbund
Architecture: all
Version: 2.24.0-2
Distribution: disco-proposed
Urgency: medium
Maintainer: Launchpad Build Daemon <buildd@lgw01-amd64-019.buildd>
Changed-By: Graham Inggs <ginggs@debian.org>
Description:
 r-bioc-cummerbund - tool for analysis of Cufflinks RNA-Seq output
Changes:
 r-bioc-cummerbund (2.24.0-2) unstable; urgency=medium
 .
   * Team upload
   * Do not call sessionInfo() while building vignettes,
     it fails on low-memory autopkgtesters
Checksums-Sha1:
 9bc926fa3ac4ad4fff58337f4e3f566ecfa51286 2540200 r-bioc-cummerbund_2.24.0-2_all.deb
 49ecb6779ebb0042d7b1fe4121d35dabe1d9ca8b 12358 r-bioc-cummerbund_2.24.0-2_amd64.buildinfo
Checksums-Sha256:
 e572c976d1db3d74057ae50a43a24771c61ff96351659db15e851dd9ebafc258 2540200 r-bioc-cummerbund_2.24.0-2_all.deb
 28b382c71426e9089fb6ffd2d952fd5ea953fbe791b1603ab575b32be25d3dc6 12358 r-bioc-cummerbund_2.24.0-2_amd64.buildinfo
Files:
 4ebbf1d869179bc676c1b9446103b803 2540200 gnu-r optional r-bioc-cummerbund_2.24.0-2_all.deb
 5fd71b924351629c8ae13fa3d321f691 12358 gnu-r optional r-bioc-cummerbund_2.24.0-2_amd64.buildinfo

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r-bioc-cummerbund_2.24.0-2_all.deb
----------------------------------

 new debian package, version 2.0.
 size 2540200 bytes: control archive=2632 bytes.
     948 bytes,    15 lines      control              
    5897 bytes,    65 lines      md5sums              
 Package: r-bioc-cummerbund
 Version: 2.24.0-2
 Architecture: all
 Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
 Original-Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
 Installed-Size: 8929
 Depends: r-base-core (>= 3.5.1-2), r-api-3.5, r-api-bioc-3.8, r-bioc-biocgenerics (>= 0.3.2), r-cran-rsqlite, r-cran-ggplot2, r-cran-reshape2, r-cran-fastcluster, r-bioc-rtracklayer, r-bioc-gviz, r-cran-plyr, r-bioc-s4vectors (>= 0.9.25), r-bioc-biobase
 Suggests: r-cran-cluster, r-cran-stringr, r-bioc-genomicfeatures, r-bioc-genomicranges, r-cran-rjson
 Section: gnu-r
 Priority: optional
 Homepage: https://bioconductor.org/packages/cummeRbund/
 Description: tool for analysis of Cufflinks RNA-Seq output
  Allows for persistent storage, access, exploration, and manipulation of
  Cufflinks high-throughput sequencing data. In addition, provides
  numerous plotting functions for commonly used visualizations.

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Purging /<<BUILDDIR>>
Not removing build depends: as requested

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| Summary                                                                      |
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Build Architecture: amd64
Build-Space: 20528
Build-Time: 111
Distribution: disco-proposed
Host Architecture: amd64
Install-Time: 171
Job: r-bioc-cummerbund_2.24.0-2.dsc
Machine Architecture: amd64
Package: r-bioc-cummerbund
Package-Time: 285
Source-Version: 2.24.0-2
Space: 20528
Status: successful
Version: 2.24.0-2
--------------------------------------------------------------------------------
Finished at 20181205-1739
Build needed 00:04:45, 20528k disc space
RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-15742214
Scanning for processes to kill in build PACKAGEBUILD-15742214