https://launchpad.net/ubuntu/+source/r-bioc-dada2/1.14.0+dfsg-1/+build/18091244
RUN: /usr/share/launchpad-buildd/bin/builder-prep 
Kernel version: Linux lgw01-amd64-031 4.4.0-169-generic #198-Ubuntu SMP Tue Nov 12 10:38:00 UTC 2019 x86_64
Buildd toolchain package versions: launchpad-buildd_180 python-lpbuildd_180 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2.
Syncing the system clock with the buildd NTP service...
21 Nov 10:38:28 ntpdate[1905]: adjust time server 10.211.37.1 offset -0.000156 sec
RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18091244 --image-type chroot /home/buildd/filecache-default/e96c25c651525abc9f0cabeb95ea71010abf4ecb
Creating target for build PACKAGEBUILD-18091244
RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18091244
Starting target for build PACKAGEBUILD-18091244
RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18091244 'deb http://ftpmaster.internal/ubuntu focal main universe' 'deb http://ftpmaster.internal/ubuntu focal-security main universe' 'deb http://ftpmaster.internal/ubuntu focal-updates main universe' 'deb http://ftpmaster.internal/ubuntu focal-proposed main universe'
Overriding sources.list in build-PACKAGEBUILD-18091244
RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18091244
Updating target for build PACKAGEBUILD-18091244
Get:1 http://ftpmaster.internal/ubuntu focal InRelease [255 kB]
Get:2 http://ftpmaster.internal/ubuntu focal-security InRelease [79.7 kB]
Get:3 http://ftpmaster.internal/ubuntu focal-updates InRelease [79.7 kB]
Get:4 http://ftpmaster.internal/ubuntu focal-proposed InRelease [107 kB]
Get:5 http://ftpmaster.internal/ubuntu focal/main amd64 Packages [975 kB]
Get:6 http://ftpmaster.internal/ubuntu focal/main Translation-en [505 kB]
Get:7 http://ftpmaster.internal/ubuntu focal/universe amd64 Packages [8769 kB]
Get:8 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5212 kB]
Get:9 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 Packages [75.0 kB]
Get:10 http://ftpmaster.internal/ubuntu focal-proposed/main Translation-en [40.8 kB]
Get:11 http://ftpmaster.internal/ubuntu focal-proposed/universe amd64 Packages [335 kB]
Get:12 http://ftpmaster.internal/ubuntu focal-proposed/universe Translation-en [175 kB]
Fetched 16.6 MB in 3s (6417 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
The following packages were automatically installed and are no longer required:
  libhogweed4 libnettle6 libperl5.28 perl-modules-5.28
Use 'sudo apt autoremove' to remove them.
The following NEW packages will be installed:
  libhogweed5 libnettle7 libperl5.30 perl-modules-5.30
The following packages will be upgraded:
  base-files bash binutils binutils-common binutils-x86-64-linux-gnu bzip2
  cpp-9 debianutils g++-9 gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv hostname
  libacl1 libapparmor1 libasan5 libatomic1 libattr1 libaudit-common libaudit1
  libbinutils libbz2-1.0 libcap-ng0 libcap2 libcc1-0 libcryptsetup12
  libdebconfclient0 libgcc-9-dev libgcc1 libgcrypt20 libgnutls30 libgomp1
  libitm1 libjson-c4 libkmod2 liblockfile-bin liblockfile1 liblsan0 liblz4-1
  libncurses6 libncursesw6 libp11-kit0 libquadmath0 libseccomp2 libselinux1
  libsemanage-common libsemanage1 libsqlite3-0 libstdc++-9-dev libstdc++6
  libsystemd0 libtinfo6 libtsan0 libubsan1 libudev1 libzstd1 linux-libc-dev
  lsb-base ncurses-base ncurses-bin perl perl-base systemd systemd-sysv
  sysvinit-utils
68 upgraded, 4 newly installed, 0 to remove and 0 not upgraded.
Need to get 56.2 MB of archives.
After this operation, 47.7 MB of additional disk space will be used.
Get:1 http://ftpmaster.internal/ubuntu focal/main amd64 base-files amd64 11ubuntu1 [60.5 kB]
Get:2 http://ftpmaster.internal/ubuntu focal/main amd64 debianutils amd64 4.9 [85.9 kB]
Get:3 http://ftpmaster.internal/ubuntu focal/main amd64 bash amd64 5.0-5ubuntu1 [639 kB]
Get:4 http://ftpmaster.internal/ubuntu focal/main amd64 hostname amd64 3.23 [11.4 kB]
Get:5 http://ftpmaster.internal/ubuntu focal/main amd64 ncurses-bin amd64 6.1+20191019-1ubuntu1 [172 kB]
Get:6 http://ftpmaster.internal/ubuntu focal/main amd64 perl-modules-5.30 all 5.30.0-9 [2739 kB]
Get:7 http://ftpmaster.internal/ubuntu focal/main amd64 libperl5.30 amd64 5.30.0-9 [3950 kB]
Get:8 http://ftpmaster.internal/ubuntu focal/main amd64 perl amd64 5.30.0-9 [224 kB]
Get:9 http://ftpmaster.internal/ubuntu focal/main amd64 perl-base amd64 5.30.0-9 [1511 kB]
Get:10 http://ftpmaster.internal/ubuntu focal/main amd64 bzip2 amd64 1.0.8-2 [34.1 kB]
Get:11 http://ftpmaster.internal/ubuntu focal/main amd64 libbz2-1.0 amd64 1.0.8-2 [32.3 kB]
Get:12 http://ftpmaster.internal/ubuntu focal/main amd64 ncurses-base all 6.1+20191019-1ubuntu1 [17.9 kB]
Get:13 http://ftpmaster.internal/ubuntu focal/main amd64 lsb-base all 11.1.0ubuntu1 [12.2 kB]
Get:14 http://ftpmaster.internal/ubuntu focal/main amd64 sysvinit-utils amd64 2.96-1ubuntu1 [20.8 kB]
Get:15 http://ftpmaster.internal/ubuntu focal/main amd64 systemd-sysv amd64 243-3ubuntu1 [9364 B]
Get:16 http://ftpmaster.internal/ubuntu focal/main amd64 libacl1 amd64 2.2.53-5 [18.8 kB]
Get:17 http://ftpmaster.internal/ubuntu focal/main amd64 libapparmor1 amd64 2.13.3-5ubuntu5 [34.6 kB]
Get:18 http://ftpmaster.internal/ubuntu focal/main amd64 libaudit-common all 1:2.8.5-2ubuntu3 [4108 B]
Get:19 http://ftpmaster.internal/ubuntu focal/main amd64 libcap-ng0 amd64 0.7.9-2.1 [11.1 kB]
Get:20 http://ftpmaster.internal/ubuntu focal/main amd64 libaudit1 amd64 1:2.8.5-2ubuntu3 [39.1 kB]
Get:21 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libcap2 amd64 1:2.27-1 [14.1 kB]
Get:22 http://ftpmaster.internal/ubuntu focal/main amd64 libjson-c4 amd64 0.13.1+dfsg-6 [29.2 kB]
Get:23 http://ftpmaster.internal/ubuntu focal/main amd64 libcryptsetup12 amd64 2:2.2.2-1ubuntu1 [182 kB]
Get:24 http://ftpmaster.internal/ubuntu focal/main amd64 libnettle7 amd64 3.5.1+really3.5.1-2 [114 kB]
Get:25 http://ftpmaster.internal/ubuntu focal/main amd64 libhogweed5 amd64 3.5.1+really3.5.1-2 [138 kB]
Get:26 http://ftpmaster.internal/ubuntu focal/main amd64 libp11-kit0 amd64 0.23.18.1-2 [189 kB]
Get:27 http://ftpmaster.internal/ubuntu focal/main amd64 libgnutls30 amd64 3.6.10-5 [785 kB]
Get:28 http://ftpmaster.internal/ubuntu focal/main amd64 libkmod2 amd64 26-3ubuntu1 [42.9 kB]
Get:29 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 liblz4-1 amd64 1.9.2-2 [55.9 kB]
Get:30 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libseccomp2 amd64 2.4.2-2ubuntu1 [39.4 kB]
Get:31 http://ftpmaster.internal/ubuntu focal/main amd64 systemd amd64 243-3ubuntu1 [3630 kB]
Get:32 http://ftpmaster.internal/ubuntu focal/main amd64 libsystemd0 amd64 243-3ubuntu1 [263 kB]
Get:33 http://ftpmaster.internal/ubuntu focal/main amd64 libcc1-0 amd64 9.2.1-19ubuntu1 [49.1 kB]
Get:34 http://ftpmaster.internal/ubuntu focal/main amd64 binutils-x86-64-linux-gnu amd64 2.33.1-1ubuntu1 [1639 kB]
Get:35 http://ftpmaster.internal/ubuntu focal/main amd64 libbinutils amd64 2.33.1-1ubuntu1 [475 kB]
Get:36 http://ftpmaster.internal/ubuntu focal/main amd64 binutils-common amd64 2.33.1-1ubuntu1 [203 kB]
Get:37 http://ftpmaster.internal/ubuntu focal/main amd64 binutils amd64 2.33.1-1ubuntu1 [3404 B]
Get:38 http://ftpmaster.internal/ubuntu focal/main amd64 libgomp1 amd64 9.2.1-19ubuntu1 [89.2 kB]
Get:39 http://ftpmaster.internal/ubuntu focal/main amd64 libitm1 amd64 9.2.1-19ubuntu1 [28.1 kB]
Get:40 http://ftpmaster.internal/ubuntu focal/main amd64 libatomic1 amd64 9.2.1-19ubuntu1 [9212 B]
Get:41 http://ftpmaster.internal/ubuntu focal/main amd64 libasan5 amd64 9.2.1-19ubuntu1 [395 kB]
Get:42 http://ftpmaster.internal/ubuntu focal/main amd64 liblsan0 amd64 9.2.1-19ubuntu1 [139 kB]
Get:43 http://ftpmaster.internal/ubuntu focal/main amd64 libtsan0 amd64 9.2.1-19ubuntu1 [301 kB]
Get:44 http://ftpmaster.internal/ubuntu focal/main amd64 libubsan1 amd64 9.2.1-19ubuntu1 [130 kB]
Get:45 http://ftpmaster.internal/ubuntu focal/main amd64 libquadmath0 amd64 9.2.1-19ubuntu1 [146 kB]
Get:46 http://ftpmaster.internal/ubuntu focal/main amd64 gcc-9-base amd64 9.2.1-19ubuntu1 [19.2 kB]
Get:47 http://ftpmaster.internal/ubuntu focal/main amd64 libstdc++6 amd64 9.2.1-19ubuntu1 [511 kB]
Get:48 http://ftpmaster.internal/ubuntu focal/main amd64 g++-9 amd64 9.2.1-19ubuntu1 [10.2 MB]
Get:49 http://ftpmaster.internal/ubuntu focal/main amd64 libstdc++-9-dev amd64 9.2.1-19ubuntu1 [1709 kB]
Get:50 http://ftpmaster.internal/ubuntu focal/main amd64 libgcc-9-dev amd64 9.2.1-19ubuntu1 [2359 kB]
Get:51 http://ftpmaster.internal/ubuntu focal/main amd64 gcc-9 amd64 9.2.1-19ubuntu1 [9772 kB]
Get:52 http://ftpmaster.internal/ubuntu focal/main amd64 cpp-9 amd64 9.2.1-19ubuntu1 [8962 kB]
Get:53 http://ftpmaster.internal/ubuntu focal/main amd64 libgcc1 amd64 1:9.2.1-19ubuntu1 [40.8 kB]
Get:54 http://ftpmaster.internal/ubuntu focal/main amd64 libattr1 amd64 1:2.4.48-5 [12.7 kB]
Get:55 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libdebconfclient0 amd64 0.250ubuntu1 [6384 B]
Get:56 http://ftpmaster.internal/ubuntu focal/main amd64 libgcrypt20 amd64 1.8.5-3ubuntu1 [419 kB]
Get:57 http://ftpmaster.internal/ubuntu focal/main amd64 libncurses6 amd64 6.1+20191019-1ubuntu1 [101 kB]
Get:58 http://ftpmaster.internal/ubuntu focal/main amd64 libtinfo6 amd64 6.1+20191019-1ubuntu1 [85.9 kB]
Get:59 http://ftpmaster.internal/ubuntu focal/main amd64 libncursesw6 amd64 6.1+20191019-1ubuntu1 [132 kB]
Get:60 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libselinux1 amd64 2.9-3 [69.6 kB]
Get:61 http://ftpmaster.internal/ubuntu focal/main amd64 libsemanage-common all 2.9-3build1 [9736 B]
Get:62 http://ftpmaster.internal/ubuntu focal/main amd64 libsemanage1 amd64 2.9-3build1 [85.5 kB]
Get:63 http://ftpmaster.internal/ubuntu focal/main amd64 libudev1 amd64 243-3ubuntu1 [79.1 kB]
Get:64 http://ftpmaster.internal/ubuntu focal/main amd64 libzstd1 amd64 1.4.4+dfsg-1 [237 kB]
Get:65 http://ftpmaster.internal/ubuntu focal/main amd64 gpgv amd64 2.2.17-3ubuntu1 [200 kB]
Get:66 http://ftpmaster.internal/ubuntu focal/main amd64 libsqlite3-0 amd64 3.30.1-1 [539 kB]
Get:67 http://ftpmaster.internal/ubuntu focal/main amd64 gpg amd64 2.2.17-3ubuntu1 [479 kB]
Get:68 http://ftpmaster.internal/ubuntu focal/main amd64 gpgconf amd64 2.2.17-3ubuntu1 [124 kB]
Get:69 http://ftpmaster.internal/ubuntu focal/main amd64 gpg-agent amd64 2.2.17-3ubuntu1 [232 kB]
Get:70 http://ftpmaster.internal/ubuntu focal/main amd64 liblockfile-bin amd64 1.16-1.1 [11.7 kB]
Get:71 http://ftpmaster.internal/ubuntu focal/main amd64 liblockfile1 amd64 1.16-1.1 [6680 B]
Get:72 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 linux-libc-dev amd64 5.3.0-21.22 [1085 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Installing new version of config file /etc/debian_version ...
Installing new version of config file /etc/issue ...
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Installing new version of config file /etc/lsb-release ...
Updating /root/.profile to current default.
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Setting up bash (5.0-5ubuntu1) ...
update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode
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RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-18091244 amd64 focal-proposed -c chroot:build-PACKAGEBUILD-18091244 --arch=amd64 --dist=focal-proposed --nolog -A r-bioc-dada2_1.14.0+dfsg-1.dsc
Initiating build PACKAGEBUILD-18091244 with 4 jobs across 4 processor cores.
Kernel reported to sbuild: 4.4.0-169-generic #198-Ubuntu SMP Tue Nov 12 10:38:00 UTC 2019 x86_64
sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-031.buildd

+==============================================================================+
| r-bioc-dada2 1.14.0+dfsg-1 (amd64)                         21 Nov 2019 10:38 |
+==============================================================================+

Package: r-bioc-dada2
Version: 1.14.0+dfsg-1
Source Version: 1.14.0+dfsg-1
Distribution: focal-proposed
Machine Architecture: amd64
Host Architecture: amd64
Build Architecture: amd64

I: NOTICE: Log filtering will replace 'build/r-bioc-dada2-yQynKc/r-bioc-dada2-1.14.0+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-dada2-yQynKc' with '<<BUILDDIR>>'
I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-18091244/chroot-autobuild' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


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r-bioc-dada2_1.14.0+dfsg-1.dsc exists in .; copying to chroot

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The following packages were automatically installed and are no longer required:
  libhogweed4 libnettle6 libperl5.28 perl-modules-5.28
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
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Merged Build-Depends: debhelper-compat (= 12), dh-r, r-base-dev, r-cran-rcpp (>= 0.12.0), r-bioc-biostrings (>= 2.42.1), r-cran-ggplot2 (>= 2.1.0), r-cran-reshape2 (>= 1.4.1), r-bioc-shortread (>= 1.32.0), r-cran-rcppparallel, r-bioc-iranges (>= 2.6.0), r-bioc-xvector (>= 0.16.0), r-bioc-biocgenerics (>= 0.22.0)
Filtered Build-Depends: debhelper-compat (= 12), dh-r, r-base-dev, r-cran-rcpp (>= 0.12.0), r-bioc-biostrings (>= 2.42.1), r-cran-ggplot2 (>= 2.1.0), r-cran-reshape2 (>= 1.4.1), r-bioc-shortread (>= 1.32.0), r-cran-rcppparallel, r-bioc-iranges (>= 2.6.0), r-bioc-xvector (>= 0.16.0), r-bioc-biocgenerics (>= 0.22.0)
dpkg-deb: building package 'sbuild-build-depends-r-bioc-dada2-dummy' in '/<<BUILDDIR>>/resolver-ntna97/apt_archive/sbuild-build-depends-r-bioc-dada2-dummy.deb'.
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+------------------------------------------------------------------------------+
| Install r-bioc-dada2 build dependencies (apt-based resolver)                 |
+------------------------------------------------------------------------------+

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  libhogweed4 libnettle6 libperl5.28 perl-modules-5.28
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper
  dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig
  fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-9
  groff-base icu-devtools intltool-debian libarchive-zip-perl
  libasn1-8-heimdal libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev
  libcairo2 libcroco3 libcurl4 libdatrie1 libdebhelper-perl libelf1 libexpat1
  libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
  libfreetype6 libfribidi0 libgfortran-9-dev libgfortran5 libglib2.0-0
  libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b
  libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal
  libhx509-5-heimdal libice6 libicu-dev libicu63 libjbig0 libjpeg-dev
  libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3
  libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev
  liblapack3 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1
  libncurses-dev libncurses5-dev libnghttp2-14 libpango-1.0-0
  libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3
  libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix0 libpcre3-dev
  libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5
  libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db
  libsigsegv2 libsm6 libssh-4 libsub-override-perl libswitch-perl libtbb-dev
  libtbb2 libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool
  libuchardet0 libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6
  libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
  libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db pkg-config po-debconf
  r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics
  r-bioc-biocparallel r-bioc-biostrings r-bioc-delayedarray
  r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments
  r-bioc-genomicranges r-bioc-iranges r-bioc-rsamtools r-bioc-s4vectors
  r-bioc-shortread r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc
  r-cran-assertthat r-cran-backports r-cran-bitops r-cran-cli
  r-cran-colorspace r-cran-crayon r-cran-digest r-cran-ellipsis r-cran-fansi
  r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-ggplot2
  r-cran-glue r-cran-gtable r-cran-hwriter r-cran-labeling r-cran-lambda.r
  r-cran-lattice r-cran-latticeextra r-cran-lazyeval r-cran-littler
  r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mgcv
  r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten
  r-cran-plyr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppparallel
  r-cran-rcurl r-cran-reshape2 r-cran-rlang r-cran-scales r-cran-snow
  r-cran-stringi r-cran-stringr r-cran-tibble r-cran-utf8 r-cran-vctrs
  r-cran-viridislite r-cran-withr r-cran-zeallot ucf unzip x11-common xauth
  xdg-utils zip zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev
  gfortran-multilib gfortran-doc gfortran-9-multilib gfortran-9-doc
  libgfortran5-dbg libcoarrays-dev groff liblapack-doc krb5-doc krb5-user
  icu-doc liblzma-doc ncurses-doc readline-doc tbb-examples libtbb-doc tcl8.6
  tk8.6 libtool-doc gcj-jdk m4-doc apparmor less www-browser libmail-box-perl
  elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base
  texlive-latex-base texlive-plain-generic texlive-fonts-recommended
  texlive-fonts-extra texlive-extra-utils texlive-latex-recommended
  texlive-latex-extra texinfo r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2
  r-bioc-annotate r-cran-foreach r-cran-bbmisc r-bioc-variantannotation
  r-cran-codetools r-cran-knitr r-cran-data.table r-bioc-bsgenome
  r-bioc-genomicfeatures r-bioc-rtracklayer r-bioc-gviz r-bioc-annotationhub
  r-bioc-graph r-bioc-biomart r-cran-rmarkdown r-cran-jsonlite r-bioc-rhdf5
  r-cran-testthat r-cran-webshot r-cran-kernsmooth r-cran-kernlab
  r-cran-mvtnorm r-cran-vcd r-cran-shiny r-cran-shinyjs r-cran-dplyr
  r-cran-png r-cran-jpeg r-cran-viridis r-cran-rstudioapi r-cran-hmisc
  r-cran-maps r-cran-maptools r-cran-multcomp r-cran-quantreg r-cran-rpart
  r-cran-sf r-cran-svglite r-cran-dbi r-cran-rsqlite r-cran-r.utils
  r-cran-forcats r-cran-getopt r-cran-base64enc r-cran-doparallel libgdal-dev
  r-cran-iterators r-cran-inline r-cran-xml r-cran-covr r-cran-dichromat
  r-cran-rmpi r-cran-rsprng r-cran-rlecuyer r-cran-htmltools r-cran-bit64
  r-cran-generics r-cran-purrr
Recommended packages:
  devscripts curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data
  shared-mime-info xdg-user-dirs krb5-locales libpng-tools publicsuffix
  libsasl2-modules libltdl-dev libmail-sendmail-perl r-recommended r-doc-html
  r-cran-runit r-cran-batchjobs r-cran-doparallel r-cran-batchtools
  r-cran-rmpi r-bioc-genefilter r-bioc-annotate r-cran-testthat r-cran-mockery
  r-cran-testit r-cran-codetools r-cran-survival r-cran-sp r-cran-mapproj
  r-cran-hexbin r-cran-lubridate r-cran-domc r-cran-abind r-cran-rmarkdown
  r-cran-bit64 r-cran-hms r-cran-htmltools r-cran-htmlwidgets
  r-cran-data.table r-cran-rsqlite r-cran-knitr r-cran-dplyr r-cran-mockr
  r-cran-dbi libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl
  x11-utils x11-xserver-utils
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper
  dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig
  fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-9
  groff-base icu-devtools intltool-debian libarchive-zip-perl
  libasn1-8-heimdal libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev
  libcairo2 libcroco3 libcurl4 libdatrie1 libdebhelper-perl libelf1 libexpat1
  libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
  libfreetype6 libfribidi0 libgfortran-9-dev libgfortran5 libglib2.0-0
  libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b
  libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal
  libhx509-5-heimdal libice6 libicu-dev libicu63 libjbig0 libjpeg-dev
  libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3
  libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev
  liblapack3 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1
  libncurses-dev libncurses5-dev libnghttp2-14 libpango-1.0-0
  libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3
  libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix0 libpcre3-dev
  libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5
  libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db
  libsigsegv2 libsm6 libssh-4 libsub-override-perl libswitch-perl libtbb-dev
  libtbb2 libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool
  libuchardet0 libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6
  libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
  libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db pkg-config po-debconf
  r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics
  r-bioc-biocparallel r-bioc-biostrings r-bioc-delayedarray
  r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments
  r-bioc-genomicranges r-bioc-iranges r-bioc-rsamtools r-bioc-s4vectors
  r-bioc-shortread r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc
  r-cran-assertthat r-cran-backports r-cran-bitops r-cran-cli
  r-cran-colorspace r-cran-crayon r-cran-digest r-cran-ellipsis r-cran-fansi
  r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-ggplot2
  r-cran-glue r-cran-gtable r-cran-hwriter r-cran-labeling r-cran-lambda.r
  r-cran-lattice r-cran-latticeextra r-cran-lazyeval r-cran-littler
  r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mgcv
  r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten
  r-cran-plyr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppparallel
  r-cran-rcurl r-cran-reshape2 r-cran-rlang r-cran-scales r-cran-snow
  r-cran-stringi r-cran-stringr r-cran-tibble r-cran-utf8 r-cran-vctrs
  r-cran-viridislite r-cran-withr r-cran-zeallot
  sbuild-build-depends-r-bioc-dada2-dummy ucf unzip x11-common xauth xdg-utils
  zip zlib1g-dev
0 upgraded, 209 newly installed, 0 to remove and 0 not upgraded.
Need to get 163 MB of archives.
After this operation, 394 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-ntna97/apt_archive ./ sbuild-build-depends-r-bioc-dada2-dummy 0.invalid.0 [988 B]
Get:2 http://ftpmaster.internal/ubuntu focal/main amd64 libbsd0 amd64 0.10.0-1 [45.4 kB]
Get:3 http://ftpmaster.internal/ubuntu focal/main amd64 bsdmainutils amd64 11.1.2ubuntu2 [181 kB]
Get:4 http://ftpmaster.internal/ubuntu focal/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB]
Get:5 http://ftpmaster.internal/ubuntu focal/main amd64 groff-base amd64 1.22.4-3 [862 kB]
Get:6 http://ftpmaster.internal/ubuntu focal/main amd64 libpipeline1 amd64 1.5.1-2 [25.9 kB]
Get:7 http://ftpmaster.internal/ubuntu focal/main amd64 man-db amd64 2.9.0-1 [1115 kB]
Get:8 http://ftpmaster.internal/ubuntu focal/main amd64 libmagic-mgc amd64 1:5.37-6 [209 kB]
Get:9 http://ftpmaster.internal/ubuntu focal/main amd64 libmagic1 amd64 1:5.37-6 [75.3 kB]
Get:10 http://ftpmaster.internal/ubuntu focal/main amd64 file amd64 1:5.37-6 [23.2 kB]
Get:11 http://ftpmaster.internal/ubuntu focal/main amd64 libelf1 amd64 0.176-1.1 [44.1 kB]
Get:12 http://ftpmaster.internal/ubuntu focal/main amd64 libexpat1 amd64 2.2.9-1 [73.3 kB]
Get:13 http://ftpmaster.internal/ubuntu focal/main amd64 libfribidi0 amd64 1.0.7-1.1 [23.6 kB]
Get:14 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libglib2.0-0 amd64 2.63.1-2 [1270 kB]
Get:15 http://ftpmaster.internal/ubuntu focal/main amd64 libicu63 amd64 63.2-2 [8294 kB]
Get:16 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libxml2 amd64 2.9.4+dfsg1-8ubuntu1 [648 kB]
Get:17 http://ftpmaster.internal/ubuntu focal/main amd64 ucf all 3.0038+nmu1 [51.6 kB]
Get:18 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 gettext-base amd64 0.19.8.1-10 [50.2 kB]
Get:19 http://ftpmaster.internal/ubuntu focal/main amd64 libkrb5support0 amd64 1.17-6 [31.4 kB]
Get:20 http://ftpmaster.internal/ubuntu focal/main amd64 libk5crypto3 amd64 1.17-6 [80.2 kB]
Get:21 http://ftpmaster.internal/ubuntu focal/main amd64 libkeyutils1 amd64 1.6-6ubuntu1 [10.2 kB]
Get:22 http://ftpmaster.internal/ubuntu focal/main amd64 libkrb5-3 amd64 1.17-6 [330 kB]
Get:23 http://ftpmaster.internal/ubuntu focal/main amd64 libgssapi-krb5-2 amd64 1.17-6 [121 kB]
Get:24 http://ftpmaster.internal/ubuntu focal/main amd64 libpsl5 amd64 0.20.2-2 [50.0 kB]
Get:25 http://ftpmaster.internal/ubuntu focal/main amd64 libxau6 amd64 1:1.0.9-0ubuntu1 [7488 B]
Get:26 http://ftpmaster.internal/ubuntu focal/main amd64 libxdmcp6 amd64 1:1.1.3-0ubuntu1 [10.6 kB]
Get:27 http://ftpmaster.internal/ubuntu focal/main amd64 libxcb1 amd64 1.13.1-2 [45.2 kB]
Get:28 http://ftpmaster.internal/ubuntu focal/main amd64 libx11-data all 2:1.6.8-1 [113 kB]
Get:29 http://ftpmaster.internal/ubuntu focal/main amd64 libx11-6 amd64 2:1.6.8-1 [573 kB]
Get:30 http://ftpmaster.internal/ubuntu focal/main amd64 libxext6 amd64 2:1.3.4-0ubuntu1 [29.1 kB]
Get:31 http://ftpmaster.internal/ubuntu focal/main amd64 libxmuu1 amd64 2:1.1.3-0ubuntu1 [9728 B]
Get:32 http://ftpmaster.internal/ubuntu focal/main amd64 xauth amd64 1:1.1-0ubuntu1 [25.0 kB]
Get:33 http://ftpmaster.internal/ubuntu focal/main amd64 libsigsegv2 amd64 2.12-2 [13.9 kB]
Get:34 http://ftpmaster.internal/ubuntu focal/main amd64 m4 amd64 1.4.18-4 [199 kB]
Get:35 http://ftpmaster.internal/ubuntu focal/main amd64 autoconf all 2.69-11ubuntu1 [321 kB]
Get:36 http://ftpmaster.internal/ubuntu focal/main amd64 autotools-dev all 20180224.1 [39.6 kB]
Get:37 http://ftpmaster.internal/ubuntu focal/main amd64 automake all 1:1.16.1-4ubuntu3 [522 kB]
Get:38 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 autopoint all 0.19.8.1-10 [412 kB]
Get:39 http://ftpmaster.internal/ubuntu focal/main amd64 dctrl-tools amd64 2.24-3 [61.5 kB]
Get:40 http://ftpmaster.internal/ubuntu focal/main amd64 libtool all 2.4.6-11 [194 kB]
Get:41 http://ftpmaster.internal/ubuntu focal/main amd64 dh-autoreconf all 19 [16.1 kB]
Get:42 http://ftpmaster.internal/ubuntu focal/main amd64 libdebhelper-perl all 12.7.1ubuntu1 [52.0 kB]
Get:43 http://ftpmaster.internal/ubuntu focal/main amd64 libarchive-zip-perl all 1.67-1 [90.4 kB]
Get:44 http://ftpmaster.internal/ubuntu focal/main amd64 libsub-override-perl all 0.09-2 [9532 B]
Get:45 http://ftpmaster.internal/ubuntu focal/main amd64 libfile-stripnondeterminism-perl all 1.6.2-1 [16.1 kB]
Get:46 http://ftpmaster.internal/ubuntu focal/main amd64 dh-strip-nondeterminism all 1.6.2-1 [5228 B]
Get:47 http://ftpmaster.internal/ubuntu focal/main amd64 dwz amd64 0.13-2 [145 kB]
Get:48 http://ftpmaster.internal/ubuntu focal/main amd64 libcroco3 amd64 0.6.13-1 [82.5 kB]
Get:49 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 gettext amd64 0.19.8.1-10 [897 kB]
Get:50 http://ftpmaster.internal/ubuntu focal/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB]
Get:51 http://ftpmaster.internal/ubuntu focal/main amd64 po-debconf all 1.0.21 [233 kB]
Get:52 http://ftpmaster.internal/ubuntu focal/main amd64 debhelper all 12.7.1ubuntu1 [875 kB]
Get:53 http://ftpmaster.internal/ubuntu focal/main amd64 zip amd64 3.0-11build1 [167 kB]
Get:54 http://ftpmaster.internal/ubuntu focal/main amd64 unzip amd64 6.0-25ubuntu1 [169 kB]
Get:55 http://ftpmaster.internal/ubuntu focal/main amd64 libpaper1 amd64 1.1.28 [13.0 kB]
Get:56 http://ftpmaster.internal/ubuntu focal/main amd64 libpaper-utils amd64 1.1.28 [8400 B]
Get:57 http://ftpmaster.internal/ubuntu focal/main amd64 xdg-utils all 1.1.3-1ubuntu2 [60.5 kB]
Get:58 http://ftpmaster.internal/ubuntu focal/main amd64 libblas3 amd64 3.8.0-8ubuntu1 [141 kB]
Get:59 http://ftpmaster.internal/ubuntu focal/main amd64 libfreetype6 amd64 2.10.1-2 [341 kB]
Get:60 http://ftpmaster.internal/ubuntu focal/main amd64 fonts-dejavu-core all 2.37-1 [1041 kB]
Get:61 http://ftpmaster.internal/ubuntu focal/main amd64 fontconfig-config all 2.13.1-2ubuntu2 [28.9 kB]
Get:62 http://ftpmaster.internal/ubuntu focal/main amd64 libfontconfig1 amd64 2.13.1-2ubuntu2 [114 kB]
Get:63 http://ftpmaster.internal/ubuntu focal/main amd64 libpixman-1-0 amd64 0.38.4-0ubuntu1 [227 kB]
Get:64 http://ftpmaster.internal/ubuntu focal/main amd64 libxcb-render0 amd64 1.13.1-2 [14.8 kB]
Get:65 http://ftpmaster.internal/ubuntu focal/main amd64 libxcb-shm0 amd64 1.13.1-2 [5548 B]
Get:66 http://ftpmaster.internal/ubuntu focal/main amd64 libxrender1 amd64 1:0.9.10-1 [18.7 kB]
Get:67 http://ftpmaster.internal/ubuntu focal/main amd64 libcairo2 amd64 1.16.0-4 [583 kB]
Get:68 http://ftpmaster.internal/ubuntu focal/main amd64 libbrotli1 amd64 1.0.7-5 [265 kB]
Get:69 http://ftpmaster.internal/ubuntu focal/main amd64 libroken18-heimdal amd64 7.5.0+dfsg-3build1 [41.8 kB]
Get:70 http://ftpmaster.internal/ubuntu focal/main amd64 libasn1-8-heimdal amd64 7.5.0+dfsg-3build1 [181 kB]
Get:71 http://ftpmaster.internal/ubuntu focal/main amd64 libheimbase1-heimdal amd64 7.5.0+dfsg-3build1 [29.7 kB]
Get:72 http://ftpmaster.internal/ubuntu focal/main amd64 libhcrypto4-heimdal amd64 7.5.0+dfsg-3build1 [87.2 kB]
Get:73 http://ftpmaster.internal/ubuntu focal/main amd64 libwind0-heimdal amd64 7.5.0+dfsg-3build1 [47.9 kB]
Get:74 http://ftpmaster.internal/ubuntu focal/main amd64 libhx509-5-heimdal amd64 7.5.0+dfsg-3build1 [107 kB]
Get:75 http://ftpmaster.internal/ubuntu focal/main amd64 libkrb5-26-heimdal amd64 7.5.0+dfsg-3build1 [206 kB]
Get:76 http://ftpmaster.internal/ubuntu focal/main amd64 libheimntlm0-heimdal amd64 7.5.0+dfsg-3build1 [15.0 kB]
Get:77 http://ftpmaster.internal/ubuntu focal/main amd64 libgssapi3-heimdal amd64 7.5.0+dfsg-3build1 [96.0 kB]
Get:78 http://ftpmaster.internal/ubuntu focal/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1build3 [14.6 kB]
Get:79 http://ftpmaster.internal/ubuntu focal/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1build3 [49.4 kB]
Get:80 http://ftpmaster.internal/ubuntu focal/main amd64 libldap-common all 2.4.48+dfsg-1ubuntu3 [17.3 kB]
Get:81 http://ftpmaster.internal/ubuntu focal/main amd64 libldap-2.4-2 amd64 2.4.48+dfsg-1ubuntu3 [155 kB]
Get:82 http://ftpmaster.internal/ubuntu focal/main amd64 libnghttp2-14 amd64 1.39.2-1 [79.1 kB]
Get:83 http://ftpmaster.internal/ubuntu focal/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2build1 [54.9 kB]
Get:84 http://ftpmaster.internal/ubuntu focal/main amd64 libssh-4 amd64 0.9.0-1ubuntu1 [196 kB]
Get:85 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libcurl4 amd64 7.66.0-1ubuntu1 [232 kB]
Get:86 http://ftpmaster.internal/ubuntu focal/main amd64 libjpeg-turbo8 amd64 2.0.3-0ubuntu1 [118 kB]
Get:87 http://ftpmaster.internal/ubuntu focal/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B]
Get:88 http://ftpmaster.internal/ubuntu focal/main amd64 libgfortran5 amd64 9.2.1-19ubuntu1 [642 kB]
Get:89 http://ftpmaster.internal/ubuntu focal/main amd64 liblapack3 amd64 3.8.0-8ubuntu1 [2112 kB]
Get:90 http://ftpmaster.internal/ubuntu focal/main amd64 fontconfig amd64 2.13.1-2ubuntu2 [171 kB]
Get:91 http://ftpmaster.internal/ubuntu focal/main amd64 libgraphite2-3 amd64 1.3.13-11 [73.7 kB]
Get:92 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libharfbuzz0b amd64 2.6.4-1 [391 kB]
Get:93 http://ftpmaster.internal/ubuntu focal/main amd64 libthai-data all 0.1.28-3 [134 kB]
Get:94 http://ftpmaster.internal/ubuntu focal/main amd64 libdatrie1 amd64 0.2.12-3 [18.7 kB]
Get:95 http://ftpmaster.internal/ubuntu focal/main amd64 libthai0 amd64 0.1.28-3 [18.1 kB]
Get:96 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libpango-1.0-0 amd64 1.44.7-1 [161 kB]
Get:97 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libpangoft2-1.0-0 amd64 1.44.7-1 [34.7 kB]
Get:98 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libpangocairo-1.0-0 amd64 1.44.7-1 [24.8 kB]
Get:99 http://ftpmaster.internal/ubuntu focal/main amd64 libtcl8.6 amd64 8.6.9+dfsg-2 [898 kB]
Get:100 http://ftpmaster.internal/ubuntu focal/main amd64 libjbig0 amd64 2.1-3.1build1 [26.7 kB]
Get:101 http://ftpmaster.internal/ubuntu focal/main amd64 libwebp6 amd64 0.6.1-2 [185 kB]
Get:102 http://ftpmaster.internal/ubuntu focal/main amd64 libtiff5 amd64 4.1.0+git191117-1 [162 kB]
Get:103 http://ftpmaster.internal/ubuntu focal/main amd64 libxft2 amd64 2.3.3-0ubuntu1 [39.2 kB]
Get:104 http://ftpmaster.internal/ubuntu focal/main amd64 x11-common all 1:7.7+19ubuntu12 [22.4 kB]
Get:105 http://ftpmaster.internal/ubuntu focal/main amd64 libxss1 amd64 1:1.2.3-1 [8140 B]
Get:106 http://ftpmaster.internal/ubuntu focal/main amd64 libtk8.6 amd64 8.6.9-2 [708 kB]
Get:107 http://ftpmaster.internal/ubuntu focal/main amd64 libice6 amd64 2:1.0.10-0ubuntu1 [41.0 kB]
Get:108 http://ftpmaster.internal/ubuntu focal/main amd64 libsm6 amd64 2:1.2.3-1 [16.1 kB]
Get:109 http://ftpmaster.internal/ubuntu focal/main amd64 libxt6 amd64 1:1.1.5-1 [160 kB]
Get:110 http://ftpmaster.internal/ubuntu focal/universe amd64 r-base-core amd64 3.6.1-7 [24.5 MB]
Get:111 http://ftpmaster.internal/ubuntu focal/main amd64 libgfortran-9-dev amd64 9.2.1-19ubuntu1 [685 kB]
Get:112 http://ftpmaster.internal/ubuntu focal/main amd64 gfortran-9 amd64 9.2.1-19ubuntu1 [9581 kB]
Get:113 http://ftpmaster.internal/ubuntu focal/main amd64 gfortran amd64 4:9.2.1-3.1ubuntu1 [1376 B]
Get:114 http://ftpmaster.internal/ubuntu focal/main amd64 libblas-dev amd64 3.8.0-8ubuntu1 [147 kB]
Get:115 http://ftpmaster.internal/ubuntu focal/main amd64 liblapack-dev amd64 3.8.0-8ubuntu1 [4155 kB]
Get:116 http://ftpmaster.internal/ubuntu focal/main amd64 libncurses-dev amd64 6.1+20191019-1ubuntu1 [339 kB]
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Get:118 http://ftpmaster.internal/ubuntu focal/main amd64 libreadline-dev amd64 8.0-3 [141 kB]
Get:119 http://ftpmaster.internal/ubuntu focal/main amd64 libjpeg-turbo8-dev amd64 2.0.3-0ubuntu1 [238 kB]
Get:120 http://ftpmaster.internal/ubuntu focal/main amd64 libjpeg8-dev amd64 8c-2ubuntu8 [1552 B]
Get:121 http://ftpmaster.internal/ubuntu focal/main amd64 libjpeg-dev amd64 8c-2ubuntu8 [1546 B]
Get:122 http://ftpmaster.internal/ubuntu focal/main amd64 libpcre2-16-0 amd64 10.32-5 [170 kB]
Get:123 http://ftpmaster.internal/ubuntu focal/main amd64 libpcre2-32-0 amd64 10.32-5 [162 kB]
Get:124 http://ftpmaster.internal/ubuntu focal/main amd64 libpcre2-posix0 amd64 10.32-5 [5712 B]
Get:125 http://ftpmaster.internal/ubuntu focal/main amd64 libpcre2-dev amd64 10.32-5 [631 kB]
Get:126 http://ftpmaster.internal/ubuntu focal/main amd64 libpcre16-3 amd64 2:8.39-12 [149 kB]
Get:127 http://ftpmaster.internal/ubuntu focal/main amd64 libpcre32-3 amd64 2:8.39-12 [140 kB]
Get:128 http://ftpmaster.internal/ubuntu focal/main amd64 libpcrecpp0v5 amd64 2:8.39-12 [15.4 kB]
Get:129 http://ftpmaster.internal/ubuntu focal/main amd64 libpcre3-dev amd64 2:8.39-12 [542 kB]
Get:130 http://ftpmaster.internal/ubuntu focal/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-1ubuntu3 [172 kB]
Get:131 http://ftpmaster.internal/ubuntu focal/main amd64 libpng-dev amd64 1.6.37-1 [176 kB]
Get:132 http://ftpmaster.internal/ubuntu focal/main amd64 libbz2-dev amd64 1.0.8-2 [30.2 kB]
Get:133 http://ftpmaster.internal/ubuntu focal/main amd64 liblzma-dev amd64 5.2.4-1 [145 kB]
Get:134 http://ftpmaster.internal/ubuntu focal/main amd64 icu-devtools amd64 63.2-2 [180 kB]
Get:135 http://ftpmaster.internal/ubuntu focal/main amd64 libicu-dev amd64 63.2-2 [9178 kB]
Get:136 http://ftpmaster.internal/ubuntu focal/main amd64 pkg-config amd64 0.29.1-0ubuntu3 [45.2 kB]
Get:137 http://ftpmaster.internal/ubuntu focal/universe amd64 r-base-dev all 3.6.1-7 [4528 B]
Get:138 http://ftpmaster.internal/ubuntu focal/main amd64 libfile-which-perl all 1.23-1 [13.8 kB]
Get:139 http://ftpmaster.internal/ubuntu focal/universe amd64 libswitch-perl all 2.17-2 [18.8 kB]
Get:140 http://ftpmaster.internal/ubuntu focal/universe amd64 dh-r all 20190917 [32.7 kB]
Get:141 http://ftpmaster.internal/ubuntu focal/universe amd64 r-cran-littler amd64 0.3.9-1 [300 kB]
Get:142 http://ftpmaster.internal/ubuntu focal/universe amd64 littler all 0.3.9-1 [2420 B]
Get:143 http://ftpmaster.internal/ubuntu focal-proposed/universe amd64 r-bioc-biocgenerics all 0.32.0-1 [639 kB]
Get:144 http://ftpmaster.internal/ubuntu focal-proposed/universe amd64 r-bioc-biobase amd64 2.46.0-1 [2221 kB]
Get:145 http://ftpmaster.internal/ubuntu focal/universe amd64 r-cran-formatr all 1.7-1 [147 kB]
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Get:147 http://ftpmaster.internal/ubuntu focal/universe amd64 r-cran-futile.options all 1.0.1-2 [19.8 kB]
Get:148 http://ftpmaster.internal/ubuntu focal/universe amd64 r-cran-futile.logger all 1.4.3-3 [102 kB]
Get:149 http://ftpmaster.internal/ubuntu focal/universe amd64 r-cran-snow all 1:0.4.3-1 [107 kB]
Get:150 http://ftpmaster.internal/ubuntu focal-proposed/universe amd64 r-bioc-biocparallel amd64 1.20.0-1 [1074 kB]
Get:151 http://ftpmaster.internal/ubuntu focal-proposed/universe amd64 r-bioc-s4vectors amd64 0.24.0-1 [1937 kB]
Get:152 http://ftpmaster.internal/ubuntu focal-proposed/universe amd64 r-bioc-iranges amd64 2.20.0-1 [2204 kB]
Get:153 http://ftpmaster.internal/ubuntu focal-proposed/universe amd64 r-bioc-zlibbioc all 1.32.0+dfsg-1 [8820 B]
Get:154 http://ftpmaster.internal/ubuntu focal-proposed/universe amd64 r-bioc-xvector amd64 0.26.0-1 [612 kB]
Get:155 http://ftpmaster.internal/ubuntu focal-proposed/universe amd64 r-bioc-biostrings amd64 2.54.0-1 [14.1 MB]
Get:156 http://ftpmaster.internal/ubuntu focal/universe amd64 r-cran-matrixstats amd64 0.55.0-1 [653 kB]
Get:157 http://ftpmaster.internal/ubuntu focal/universe amd64 r-cran-lattice amd64 0.20-38-1 [1111 kB]
Get:158 http://ftpmaster.internal/ubuntu focal/universe amd64 r-cran-matrix amd64 1.2-17-2 [3444 kB]
Get:159 http://ftpmaster.internal/ubuntu focal-proposed/universe amd64 r-bioc-delayedarray amd64 0.12.0+dfsg-1 [1658 kB]
Get:160 http://ftpmaster.internal/ubuntu focal/universe amd64 r-cran-bitops amd64 1.0-6-4 [23.5 kB]
Get:161 http://ftpmaster.internal/ubuntu focal/universe amd64 r-cran-rcurl amd64 1.95-4.12-1 [721 kB]
Get:162 http://ftpmaster.internal/ubuntu focal/universe amd64 r-bioc-genomeinfodbdata all 1.2.2-1 [10.2 MB]
Get:163 http://ftpmaster.internal/ubuntu focal-proposed/universe amd64 r-bioc-genomeinfodb all 1.22.0-1 [3686 kB]
Get:164 http://ftpmaster.internal/ubuntu focal-proposed/universe amd64 r-bioc-genomicranges amd64 1.38.0+dfsg-1 [1833 kB]
Get:165 http://ftpmaster.internal/ubuntu focal-proposed/universe amd64 r-bioc-summarizedexperiment all 1.16.0+dfsg-1 [1892 kB]
Get:166 http://ftpmaster.internal/ubuntu focal-proposed/universe amd64 r-bioc-rsamtools amd64 2.2.1-1 [3724 kB]
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Get:191 http://ftpmaster.internal/ubuntu focal/universe amd64 r-cran-stringi amd64 1.4.3-1 [710 kB]
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Get:197 http://ftpmaster.internal/ubuntu focal/universe amd64 r-cran-viridislite all 0.3.0-3 [58.9 kB]
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Get:199 http://ftpmaster.internal/ubuntu focal/universe amd64 r-cran-utf8 amd64 1.1.4-1build1 [130 kB]
Get:200 http://ftpmaster.internal/ubuntu focal/universe amd64 r-cran-zeallot all 0.1.0-2 [60.0 kB]
Get:201 http://ftpmaster.internal/ubuntu focal/universe amd64 r-cran-vctrs amd64 0.2.0-1 [695 kB]
Get:202 http://ftpmaster.internal/ubuntu focal/universe amd64 r-cran-pillar all 1.4.2-1 [225 kB]
Get:203 http://ftpmaster.internal/ubuntu focal/universe amd64 r-cran-pkgconfig all 2.0.3-1 [19.7 kB]
Get:204 http://ftpmaster.internal/ubuntu focal/universe amd64 r-cran-tibble amd64 2.1.3-1 [324 kB]
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Get:206 http://ftpmaster.internal/ubuntu focal/universe amd64 r-cran-ggplot2 all 3.2.1+dfsg-1 [2834 kB]
Get:207 http://ftpmaster.internal/ubuntu focal/universe amd64 libtbb2 amd64 2019~U9-2 [118 kB]
Get:208 http://ftpmaster.internal/ubuntu focal/universe amd64 libtbb-dev amd64 2019~U9-2 [276 kB]
Get:209 http://ftpmaster.internal/ubuntu focal/universe amd64 r-cran-rcppparallel amd64 4.4.4+dfsg-1 [103 kB]
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+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.4.0-169-generic amd64 (x86_64)
Toolchain package versions: binutils_2.33.1-1ubuntu1 dpkg-dev_1.19.7ubuntu2 g++-9_9.2.1-19ubuntu1 gcc-9_9.2.1-19ubuntu1 libc6-dev_2.30-0ubuntu2 libstdc++-9-dev_9.2.1-19ubuntu1 libstdc++6_9.2.1-19ubuntu1 linux-libc-dev_5.3.0-21.22
Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1 apt_1.9.4 autoconf_2.69-11ubuntu1 automake_1:1.16.1-4ubuntu3 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11ubuntu1 base-passwd_3.5.46 bash_5.0-5ubuntu1 binutils_2.33.1-1ubuntu1 binutils-common_2.33.1-1ubuntu1 binutils-x86-64-linux-gnu_2.33.1-1ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.34-0.1ubuntu2 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110 coreutils_8.30-3ubuntu2 cpp_4:9.2.1-3.1ubuntu1 cpp-9_9.2.1-19ubuntu1 dash_0.5.10.2-6 dctrl-tools_2.24-3 debconf_1.5.73 debhelper_12.7.1ubuntu1 debianutils_4.9 dh-autoreconf_19 dh-r_20190917 dh-strip-nondeterminism_1.6.2-1 diffutils_1:3.7-3 dpkg_1.19.7ubuntu2 dpkg-dev_1.19.7ubuntu2 dwz_0.13-2 e2fsprogs_1.45.3-4ubuntu2 fakeroot_1.24-1 fdisk_2.34-0.1ubuntu2 file_1:5.37-6 findutils_4.6.0+git+20190209-2ubuntu1 fontconfig_2.13.1-2ubuntu2 fontconfig-config_2.13.1-2ubuntu2 fonts-dejavu-core_2.37-1 g++_4:9.2.1-3.1ubuntu1 g++-9_9.2.1-19ubuntu1 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liblzma5_5.2.4-1 libmagic-mgc_1:5.37-6 libmagic1_1:5.37-6 libmount1_2.34-0.1ubuntu2 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses-dev_6.1+20191019-1ubuntu1 libncurses5-dev_6.1+20191019-1ubuntu1 libncurses6_6.1+20191019-1ubuntu1 libncursesw6_6.1+20191019-1ubuntu1 libnettle6_3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.39.2-1 libnpth0_1.6-1 libp11-kit0_0.23.18.1-2 libpam-modules_1.3.1-5ubuntu1 libpam-modules-bin_1.3.1-5ubuntu1 libpam-runtime_1.3.1-5ubuntu1 libpam0g_1.3.1-5ubuntu1 libpango-1.0-0_1.44.7-1 libpangocairo-1.0-0_1.44.7-1 libpangoft2-1.0-0_1.44.7-1 libpaper-utils_1.1.28 libpaper1_1.1.28 libpcre16-3_2:8.39-12 libpcre2-16-0_10.32-5 libpcre2-32-0_10.32-5 libpcre2-8-0_10.32-5 libpcre2-dev_10.32-5 libpcre2-posix0_10.32-5 libpcre3_2:8.39-12 libpcre3-dev_2:8.39-12 libpcre32-3_2:8.39-12 libpcrecpp0v5_2:8.39-12 libperl5.28_5.28.1-6build1 libperl5.30_5.30.0-9 libpipeline1_1.5.1-2 libpixman-1-0_0.38.4-0ubuntu1 libpng-dev_1.6.37-1 libpng16-16_1.6.37-1 libprocps7_2:3.3.15-2ubuntu3 libpsl5_0.20.2-2 libquadmath0_9.2.1-19ubuntu1 libreadline-dev_8.0-3 libreadline8_8.0-3 libroken18-heimdal_7.5.0+dfsg-3build1 librtmp1_2.4+20151223.gitfa8646d.1-2build1 libsasl2-2_2.1.27+dfsg-1build3 libsasl2-modules-db_2.1.27+dfsg-1build3 libseccomp2_2.4.2-2ubuntu1 libselinux1_2.9-3 libsemanage-common_2.9-3build1 libsemanage1_2.9-3build1 libsepol1_2.9-2 libsigsegv2_2.12-2 libsm6_2:1.2.3-1 libsmartcols1_2.34-0.1ubuntu2 libsqlite3-0_3.30.1-1 libss2_1.45.3-4ubuntu2 libssh-4_0.9.0-1ubuntu1 libssl1.1_1.1.1c-1ubuntu4 libstdc++-9-dev_9.2.1-19ubuntu1 libstdc++6_9.2.1-19ubuntu1 libsub-override-perl_0.09-2 libswitch-perl_2.17-2 libsystemd0_243-3ubuntu1 libtasn1-6_4.14-3 libtbb-dev_2019~U9-2 libtbb2_2019~U9-2 libtcl8.6_8.6.9+dfsg-2 libthai-data_0.1.28-3 libthai0_0.1.28-3 libtiff5_4.1.0+git191117-1 libtinfo6_6.1+20191019-1ubuntu1 libtk8.6_8.6.9-2 libtool_2.4.6-11 libtsan0_9.2.1-19ubuntu1 libubsan1_9.2.1-19ubuntu1 libuchardet0_0.0.6-3 libudev1_243-3ubuntu1 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu2 libwebp6_0.6.1-2 libwind0-heimdal_7.5.0+dfsg-3build1 libx11-6_2:1.6.8-1 libx11-data_2:1.6.8-1 libxau6_1:1.0.9-0ubuntu1 libxcb-render0_1.13.1-2 libxcb-shm0_1.13.1-2 libxcb1_1.13.1-2 libxdmcp6_1:1.1.3-0ubuntu1 libxext6_2:1.3.4-0ubuntu1 libxft2_2.3.3-0ubuntu1 libxml2_2.9.4+dfsg1-8ubuntu1 libxmuu1_2:1.1.3-0ubuntu1 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.1.5-1 libzstd1_1.4.4+dfsg-1 linux-libc-dev_5.3.0-21.22 littler_0.3.9-1 lockfile-progs_0.1.18 login_1:4.5-1.1ubuntu4 logsave_1.45.3-4ubuntu2 lsb-base_11.1.0ubuntu1 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-1 mawk_1.3.3-17ubuntu3 mount_2.34-0.1ubuntu2 ncurses-base_6.1+20191019-1ubuntu1 ncurses-bin_6.1+20191019-1ubuntu1 openssl_1.1.1c-1ubuntu4 optipng_0.7.7-1 passwd_1:4.5-1.1ubuntu4 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6build1 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 pkg-config_0.29.1-0ubuntu3 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu3 r-base-core_3.6.1-7 r-base-dev_3.6.1-7 r-bioc-biobase_2.46.0-1 r-bioc-biocgenerics_0.32.0-1 r-bioc-biocparallel_1.20.0-1 r-bioc-biostrings_2.54.0-1 r-bioc-delayedarray_0.12.0+dfsg-1 r-bioc-genomeinfodb_1.22.0-1 r-bioc-genomeinfodbdata_1.2.2-1 r-bioc-genomicalignments_1.22.1-1 r-bioc-genomicranges_1.38.0+dfsg-1 r-bioc-iranges_2.20.0-1 r-bioc-rsamtools_2.2.1-1 r-bioc-s4vectors_0.24.0-1 r-bioc-shortread_1.44.0-1 r-bioc-summarizedexperiment_1.16.0+dfsg-1 r-bioc-xvector_0.26.0-1 r-bioc-zlibbioc_1.32.0+dfsg-1 r-cran-assertthat_0.2.1-1 r-cran-backports_1.1.5-1 r-cran-bitops_1.0-6-4 r-cran-cli_1.1.0-1 r-cran-colorspace_1.4-1+dfsg-1 r-cran-crayon_1.3.4-4ubuntu1 r-cran-digest_0.6.22-1 r-cran-ellipsis_0.3.0-1 r-cran-fansi_0.4.0-1 r-cran-formatr_1.7-1 r-cran-futile.logger_1.4.3-3 r-cran-futile.options_1.0.1-2 r-cran-ggplot2_3.2.1+dfsg-1 r-cran-glue_1.3.1-1 r-cran-gtable_0.3.0+dfsg-1 r-cran-hwriter_1.3.2-3 r-cran-labeling_0.3-3 r-cran-lambda.r_1.2.4-1 r-cran-lattice_0.20-38-1 r-cran-latticeextra_0.6-28-2build2 r-cran-lazyeval_0.2.2-1 r-cran-littler_0.3.9-1 r-cran-magrittr_1.5-5 r-cran-mass_7.3-51.4-2 r-cran-matrix_1.2-17-2 r-cran-matrixstats_0.55.0-1 r-cran-mgcv_1.8-31-1 r-cran-munsell_0.5.0-1 r-cran-nlme_3.1.142-1 r-cran-pillar_1.4.2-1 r-cran-pkgconfig_2.0.3-1 r-cran-pkgkitten_0.1.5-1 r-cran-plyr_1.8.4-2 r-cran-r6_2.4.1-1 r-cran-rcolorbrewer_1.1-2-2 r-cran-rcpp_1.0.3-1 r-cran-rcppparallel_4.4.4+dfsg-1 r-cran-rcurl_1.95-4.12-1 r-cran-reshape2_1.4.3-2 r-cran-rlang_0.4.1-1 r-cran-scales_1.0.0-2 r-cran-snow_1:0.4.3-1 r-cran-stringi_1.4.3-1 r-cran-stringr_1.4.0-1 r-cran-tibble_2.1.3-1 r-cran-utf8_1.1.4-1build1 r-cran-vctrs_0.2.0-1 r-cran-viridislite_0.3.0-3 r-cran-withr_2.1.2-3 r-cran-zeallot_0.1.0-2 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-dada2-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 systemd_243-3ubuntu1 systemd-sysv_243-3ubuntu1 sysvinit-utils_2.96-1ubuntu1 tar_1.30+dfsg-6 tzdata_2019c-3 ubuntu-keyring_2018.09.18.1 ucf_3.0038+nmu1 unzip_6.0-25ubuntu1 util-linux_2.34-0.1ubuntu2 x11-common_1:7.7+19ubuntu12 xauth_1:1.1-0ubuntu1 xdg-utils_1.1.3-1ubuntu2 xz-utils_5.2.4-1 zip_3.0-11build1 zlib1g_1:1.2.11.dfsg-1ubuntu3 zlib1g-dev_1:1.2.11.dfsg-1ubuntu3

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: Signature made Mon Nov 11 23:21:41 2019 UTC
gpgv:                using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54
gpgv:                issuer "daissi@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-dada2_1.14.0+dfsg-1.dsc
dpkg-source: info: extracting r-bioc-dada2 in r-bioc-dada2-1.14.0+dfsg
dpkg-source: info: unpacking r-bioc-dada2_1.14.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking r-bioc-dada2_1.14.0+dfsg-1.debian.tar.xz

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=C.UTF-8
LC_ALL=C.UTF-8
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PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-18091244
SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-18091244
SCHROOT_COMMAND=env
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SCHROOT_SESSION_ID=build-PACKAGEBUILD-18091244
SCHROOT_UID=2001
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=unknown
USER=buildd
V=1

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package r-bioc-dada2
dpkg-buildpackage: info: source version 1.14.0+dfsg-1
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
 fakeroot debian/rules clean
dh clean --buildsystem R
   dh_auto_clean -O--buildsystem=R
   dh_autoreconf_clean -O--buildsystem=R
   dh_clean -O--buildsystem=R
 debian/rules build
make: 'build' is up to date.
 fakeroot debian/rules binary
dh binary --buildsystem R
   dh_update_autotools_config -O--buildsystem=R
   dh_autoreconf -O--buildsystem=R
   dh_auto_configure -O--buildsystem=R
   dh_auto_build -O--buildsystem=R
   dh_auto_test -O--buildsystem=R
   create-stamp debian/debhelper-build-stamp
   dh_testroot -O--buildsystem=R
   dh_prep -O--buildsystem=R
   dh_auto_install -O--buildsystem=R
I: R Package: dada2 Version: 1.14.0
I: Building using R version 3.6.1-7
I: R API version: r-api-3.5
I: Using built-time from d/changelog: Tue, 12 Nov 2019 00:07:38 +0100
	mkdir -p /<<BUILDDIR>>/r-bioc-dada2-1.14.0\+dfsg/debian/r-bioc-dada2/usr/lib/R/site-library
	R CMD INSTALL -l /<<BUILDDIR>>/r-bioc-dada2-1.14.0\+dfsg/debian/r-bioc-dada2/usr/lib/R/site-library --clean . "--built-timestamp='Tue, 12 Nov 2019 00:07:38 +0100'"
* installing *source* package ‘dada2’ ...
** using staged installation
** libs
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-dada2-1.14.0+dfsg/src'
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG  -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppParallel/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4YgBhQ/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG  -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppParallel/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4YgBhQ/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c Rmain.cpp -o Rmain.o
In file included from /usr/lib/R/site-library/RcppParallel/include/RcppParallel/TBB.h:6,
                 from /usr/lib/R/site-library/RcppParallel/include/RcppParallel.h:15,
                 from dada.h:9,
                 from Rmain.cpp:1:
/usr/include/tbb/tbb.h:21:154: note: #pragma message: TBB Warning: tbb.h contains deprecated functionality. For details, please see Deprecated Features appendix in the TBB reference manual.
   21 | #pragma message("TBB Warning: tbb.h contains deprecated functionality. For details, please see Deprecated Features appendix in the TBB reference manual.")
      |                                                                                                                                                          ^
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG  -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppParallel/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4YgBhQ/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c chimera.cpp -o chimera.o
In file included from /usr/lib/R/site-library/RcppParallel/include/RcppParallel/TBB.h:6,
                 from /usr/lib/R/site-library/RcppParallel/include/RcppParallel.h:15,
                 from dada.h:9,
                 from chimera.cpp:1:
/usr/include/tbb/tbb.h:21:154: note: #pragma message: TBB Warning: tbb.h contains deprecated functionality. For details, please see Deprecated Features appendix in the TBB reference manual.
   21 | #pragma message("TBB Warning: tbb.h contains deprecated functionality. For details, please see Deprecated Features appendix in the TBB reference manual.")
      |                                                                                                                                                          ^
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG  -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppParallel/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4YgBhQ/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c cluster.cpp -o cluster.o
In file included from /usr/lib/R/site-library/RcppParallel/include/RcppParallel/TBB.h:6,
                 from /usr/lib/R/site-library/RcppParallel/include/RcppParallel.h:15,
                 from cluster.cpp:2:
/usr/include/tbb/tbb.h:21:154: note: #pragma message: TBB Warning: tbb.h contains deprecated functionality. For details, please see Deprecated Features appendix in the TBB reference manual.
   21 | #pragma message("TBB Warning: tbb.h contains deprecated functionality. For details, please see Deprecated Features appendix in the TBB reference manual.")
      |                                                                                                                                                          ^
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG  -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppParallel/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4YgBhQ/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c containers.cpp -o containers.o
In file included from /usr/lib/R/site-library/RcppParallel/include/RcppParallel/TBB.h:6,
                 from /usr/lib/R/site-library/RcppParallel/include/RcppParallel.h:15,
                 from containers.cpp:2:
/usr/include/tbb/tbb.h:21:154: note: #pragma message: TBB Warning: tbb.h contains deprecated functionality. For details, please see Deprecated Features appendix in the TBB reference manual.
   21 | #pragma message("TBB Warning: tbb.h contains deprecated functionality. For details, please see Deprecated Features appendix in the TBB reference manual.")
      |                                                                                                                                                          ^
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG  -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppParallel/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4YgBhQ/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c error.cpp -o error.o
In file included from /usr/lib/R/site-library/RcppParallel/include/RcppParallel/TBB.h:6,
                 from /usr/lib/R/site-library/RcppParallel/include/RcppParallel.h:15,
                 from dada.h:9,
                 from error.cpp:2:
/usr/include/tbb/tbb.h:21:154: note: #pragma message: TBB Warning: tbb.h contains deprecated functionality. For details, please see Deprecated Features appendix in the TBB reference manual.
   21 | #pragma message("TBB Warning: tbb.h contains deprecated functionality. For details, please see Deprecated Features appendix in the TBB reference manual.")
      |                                                                                                                                                          ^
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG  -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppParallel/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4YgBhQ/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c evaluate.cpp -o evaluate.o
In file included from /usr/lib/R/site-library/RcppParallel/include/RcppParallel/TBB.h:6,
                 from /usr/lib/R/site-library/RcppParallel/include/RcppParallel.h:15,
                 from dada.h:9,
                 from evaluate.cpp:1:
/usr/include/tbb/tbb.h:21:154: note: #pragma message: TBB Warning: tbb.h contains deprecated functionality. For details, please see Deprecated Features appendix in the TBB reference manual.
   21 | #pragma message("TBB Warning: tbb.h contains deprecated functionality. For details, please see Deprecated Features appendix in the TBB reference manual.")
      |                                                                                                                                                          ^
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG  -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppParallel/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4YgBhQ/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c filter.cpp -o filter.o
In file included from /usr/lib/R/site-library/RcppParallel/include/RcppParallel/TBB.h:6,
                 from /usr/lib/R/site-library/RcppParallel/include/RcppParallel.h:15,
                 from dada.h:9,
                 from filter.cpp:2:
/usr/include/tbb/tbb.h:21:154: note: #pragma message: TBB Warning: tbb.h contains deprecated functionality. For details, please see Deprecated Features appendix in the TBB reference manual.
   21 | #pragma message("TBB Warning: tbb.h contains deprecated functionality. For details, please see Deprecated Features appendix in the TBB reference manual.")
      |                                                                                                                                                          ^
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG  -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppParallel/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4YgBhQ/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c kmers.cpp -o kmers.o
In file included from /usr/lib/R/site-library/RcppParallel/include/RcppParallel/TBB.h:6,
                 from /usr/lib/R/site-library/RcppParallel/include/RcppParallel.h:15,
                 from dada.h:9,
                 from kmers.cpp:2:
/usr/include/tbb/tbb.h:21:154: note: #pragma message: TBB Warning: tbb.h contains deprecated functionality. For details, please see Deprecated Features appendix in the TBB reference manual.
   21 | #pragma message("TBB Warning: tbb.h contains deprecated functionality. For details, please see Deprecated Features appendix in the TBB reference manual.")
      |                                                                                                                                                          ^
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG  -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppParallel/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4YgBhQ/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c misc.cpp -o misc.o
In file included from /usr/lib/R/site-library/RcppParallel/include/RcppParallel/TBB.h:6,
                 from /usr/lib/R/site-library/RcppParallel/include/RcppParallel.h:15,
                 from dada.h:9,
                 from misc.cpp:1:
/usr/include/tbb/tbb.h:21:154: note: #pragma message: TBB Warning: tbb.h contains deprecated functionality. For details, please see Deprecated Features appendix in the TBB reference manual.
   21 | #pragma message("TBB Warning: tbb.h contains deprecated functionality. For details, please see Deprecated Features appendix in the TBB reference manual.")
      |                                                                                                                                                          ^
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG  -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppParallel/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4YgBhQ/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c nwalign_endsfree.cpp -o nwalign_endsfree.o
In file included from /usr/lib/R/site-library/RcppParallel/include/RcppParallel/TBB.h:6,
                 from /usr/lib/R/site-library/RcppParallel/include/RcppParallel.h:15,
                 from dada.h:9,
                 from nwalign_endsfree.cpp:3:
/usr/include/tbb/tbb.h:21:154: note: #pragma message: TBB Warning: tbb.h contains deprecated functionality. For details, please see Deprecated Features appendix in the TBB reference manual.
   21 | #pragma message("TBB Warning: tbb.h contains deprecated functionality. For details, please see Deprecated Features appendix in the TBB reference manual.")
      |                                                                                                                                                          ^
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG  -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppParallel/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4YgBhQ/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c nwalign_vectorized.cpp -o nwalign_vectorized.o
In file included from /usr/lib/R/site-library/RcppParallel/include/RcppParallel/TBB.h:6,
                 from /usr/lib/R/site-library/RcppParallel/include/RcppParallel.h:15,
                 from dada.h:9,
                 from nwalign_vectorized.cpp:2:
/usr/include/tbb/tbb.h:21:154: note: #pragma message: TBB Warning: tbb.h contains deprecated functionality. For details, please see Deprecated Features appendix in the TBB reference manual.
   21 | #pragma message("TBB Warning: tbb.h contains deprecated functionality. For details, please see Deprecated Features appendix in the TBB reference manual.")
      |                                                                                                                                                          ^
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG  -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppParallel/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4YgBhQ/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c pval.cpp -o pval.o
In file included from /usr/lib/R/site-library/RcppParallel/include/RcppParallel/TBB.h:6,
                 from /usr/lib/R/site-library/RcppParallel/include/RcppParallel.h:15,
                 from dada.h:9,
                 from pval.cpp:6:
/usr/include/tbb/tbb.h:21:154: note: #pragma message: TBB Warning: tbb.h contains deprecated functionality. For details, please see Deprecated Features appendix in the TBB reference manual.
   21 | #pragma message("TBB Warning: tbb.h contains deprecated functionality. For details, please see Deprecated Features appendix in the TBB reference manual.")
      |                                                                                                                                                          ^
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG  -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppParallel/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-4YgBhQ/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c taxonomy.cpp -o taxonomy.o
In file included from /usr/lib/R/site-library/RcppParallel/include/RcppParallel/TBB.h:6,
                 from /usr/lib/R/site-library/RcppParallel/include/RcppParallel.h:15,
                 from dada.h:9,
                 from taxonomy.cpp:1:
/usr/include/tbb/tbb.h:21:154: note: #pragma message: TBB Warning: tbb.h contains deprecated functionality. For details, please see Deprecated Features appendix in the TBB reference manual.
   21 | #pragma message("TBB Warning: tbb.h contains deprecated functionality. For details, please see Deprecated Features appendix in the TBB reference manual.")
      |                                                                                                                                                          ^
Warning messages:
1: In fun(libname, pkgname) : TBB library  not found.
2: In fun(libname, pkgname) : TBB malloc library  not found.
Warning messages:
1: In fun(libname, pkgname) : TBB library  not found.
2: In fun(libname, pkgname) : TBB malloc library  not found.
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o dada2.so RcppExports.o Rmain.o chimera.o cluster.o containers.o error.o evaluate.o filter.o kmers.o misc.o nwalign_endsfree.o nwalign_vectorized.o pval.o taxonomy.o -ltbb -ltbbmalloc -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-dada2-1.14.0+dfsg/src'
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-dada2-1.14.0+dfsg/src'
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-dada2-1.14.0+dfsg/src'
installing to /<<BUILDDIR>>/r-bioc-dada2-1.14.0+dfsg/debian/r-bioc-dada2/usr/lib/R/site-library/00LOCK-r-bioc-dada2-1.14.0+dfsg/00new/dada2/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Warning in fun(libname, pkgname) : TBB library  not found.
Warning in fun(libname, pkgname) : TBB malloc library  not found.
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning in fun(libname, pkgname) : TBB library  not found.
Warning in fun(libname, pkgname) : TBB malloc library  not found.
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
Warning in fun(libname, pkgname) : TBB library  not found.
Warning in fun(libname, pkgname) : TBB malloc library  not found.
** testing if installed package keeps a record of temporary installation path
* DONE (dada2)
	rm -f /<<BUILDDIR>>/r-bioc-dada2-1.14.0\+dfsg/debian/r-bioc-dada2/usr/lib/R/site-library/dada2/LICENSE
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 292.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 293.
Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 296.
W: Ignoring specified R dependency: R (>= 3.4.0)
I: Using r-cran-rcpp for Depends:Rcpp (>= 0.12.0)
W: Cannot find a debian package for Suggests:BiocStyle
I: Using r-cran-knitr for Suggests:knitr
I: Using r-cran-rmarkdown for Suggests:rmarkdown
I: Using r-bioc-biostrings for Imports:Biostrings (>= 2.42.1)
I: Using r-cran-ggplot2 for Imports:ggplot2 (>= 2.1.0)
I: Using r-cran-reshape2 for Imports:reshape2 (>= 1.4.1)
I: Using r-bioc-shortread for Imports:ShortRead (>= 1.32.0)
I: Using r-cran-rcppparallel for Imports:RcppParallel (>= 4.3.0)
I: Using r-bioc-iranges for Imports:IRanges (>= 2.6.0)
I: Using r-bioc-xvector for Imports:XVector (>= 0.16.0)
I: Using r-bioc-biocgenerics for Imports:BiocGenerics (>= 0.22.0)
I: BioConductor API version: r-api-bioc-3.10
   dh_installdocs -O--buildsystem=R
   dh_installchangelogs -O--buildsystem=R
   dh_installinit -O--buildsystem=R
   dh_installsystemduser -O--buildsystem=R
   dh_perl -O--buildsystem=R
   dh_link -O--buildsystem=R
   dh_strip_nondeterminism -O--buildsystem=R
   dh_compress -O--buildsystem=R
   debian/rules override_dh_fixperms
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-dada2-1.14.0+dfsg'
dh_fixperms
find debian -name "*.fa" -exec chmod -x \{\} \;
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-dada2-1.14.0+dfsg'
   dh_missing -O--buildsystem=R
   dh_dwz -O--buildsystem=R
   dh_strip -O--buildsystem=R
   dh_makeshlibs -O--buildsystem=R
   dh_shlibdeps -O--buildsystem=R
   dh_installdeb -O--buildsystem=R
   dh_gencontrol -O--buildsystem=R
   dh_md5sums -O--buildsystem=R
   dh_builddeb -O--buildsystem=R
INFO: pkgstriptranslations version 144
INFO: pkgstriptranslations version 144
pkgstriptranslations: processing r-bioc-dada2 (in debian/r-bioc-dada2); do_strip: , oemstrip: 
pkgstriptranslations: processing r-bioc-dada2-dbgsym (in debian/.debhelper/r-bioc-dada2/dbgsym-root); do_strip: , oemstrip: 
pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>"
pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>"
pkgstripfiles: processing control file: debian/r-bioc-dada2/DEBIAN/control, package r-bioc-dada2, directory debian/r-bioc-dada2
pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-bioc-dada2 ...
pkgstripfiles: processing control file: debian/.debhelper/r-bioc-dada2/dbgsym-root/DEBIAN/control, package r-bioc-dada2-dbgsym, directory debian/.debhelper/r-bioc-dada2/dbgsym-root
pkgstripfiles: No PNG files.
dpkg-deb: building package 'r-bioc-dada2-dbgsym' in 'debian/.debhelper/scratch-space/build-r-bioc-dada2/r-bioc-dada2-dbgsym_1.14.0+dfsg-1_amd64.deb'.
dpkg-deb: building package 'r-bioc-dada2' in '../r-bioc-dada2_1.14.0+dfsg-1_amd64.deb'.
	Renaming r-bioc-dada2-dbgsym_1.14.0+dfsg-1_amd64.deb to r-bioc-dada2-dbgsym_1.14.0+dfsg-1_amd64.ddeb
 dpkg-genbuildinfo --build=binary
 dpkg-genchanges --build=binary -mLaunchpad Build Daemon <buildd@lgw01-amd64-031.buildd> >../r-bioc-dada2_1.14.0+dfsg-1_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 20191121-1041

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


r-bioc-dada2_1.14.0+dfsg-1_amd64.changes:
-----------------------------------------

Format: 1.8
Date: Tue, 12 Nov 2019 00:07:38 +0100
Source: r-bioc-dada2
Binary: r-bioc-dada2
Architecture: amd64
Version: 1.14.0+dfsg-1
Distribution: focal-proposed
Urgency: medium
Maintainer: Launchpad Build Daemon <buildd@lgw01-amd64-031.buildd>
Changed-By: Dylan Aïssi <daissi@debian.org>
Description:
 r-bioc-dada2 - sample inference from amplicon sequencing data
Changes:
 r-bioc-dada2 (1.14.0+dfsg-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Standards-Version: 4.4.1
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Files:
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+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


r-bioc-dada2_1.14.0+dfsg-1_amd64.deb
------------------------------------

 new debian package, version 2.0.
 size 1803036 bytes: control archive=2360 bytes.
    1556 bytes,    24 lines      control              
    3524 bytes,    44 lines      md5sums              
 Package: r-bioc-dada2
 Version: 1.14.0+dfsg-1
 Architecture: amd64
 Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
 Original-Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
 Installed-Size: 2120
 Depends: r-base-core (>= 3.6.1-7), r-api-3.5, r-api-bioc-3.10, r-cran-rcpp (>= 0.12.0), r-bioc-biostrings (>= 2.42.1), r-cran-ggplot2 (>= 2.1.0), r-cran-reshape2 (>= 1.4.1), r-bioc-shortread (>= 1.32.0), r-cran-rcppparallel (>= 4.3.0), r-bioc-iranges (>= 2.6.0), r-bioc-xvector (>= 0.16.0), r-bioc-biocgenerics (>= 0.22.0), libc6 (>= 2.29), libgcc1 (>= 1:3.0), libstdc++6 (>= 5.2), libtbb2 (>= 2017~U7)
 Suggests: r-cran-knitr, r-cran-rmarkdown, libjs-jquery
 Section: gnu-r
 Priority: optional
 Homepage: https://bioconductor.org/packages/dada2/
 Description: sample inference from amplicon sequencing data
  The dada2 package contributes to software workflows to interpret
  sequencing data from microbiota - the relative abundance of
  bacterial and/or yeast, typically measured in the gut.
  It infers exact amplicon sequence
  variants (ASVs) from high-throughput amplicon sequencing data,
  replacing the coarser and less accurate OTU clustering approach.
  The dada2 pipeline takes as input demultiplexed fastq files, and
  outputs the sequence variants and their sample-wise abundances
  after removing substitution and chimera errors. Taxonomic
  classification is available via a native implementation of the RDP
  naive Bayesian classifier, and species-level assignment to 16S
  rRNA gene fragments by exact matching.

drwxr-xr-x root/root         0 2019-11-11 23:07 ./
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drwxr-xr-x root/root         0 2019-11-11 23:07 ./usr/share/doc/r-bioc-dada2/
-rw-r--r-- root/root       436 2019-11-11 23:07 ./usr/share/doc/r-bioc-dada2/changelog.Debian.gz
-rw-r--r-- root/root      2146 2019-11-11 23:07 ./usr/share/doc/r-bioc-dada2/copyright


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not removing build depends: as requested

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: amd64
Build-Space: 10104
Build-Time: 122
Distribution: focal-proposed
Host Architecture: amd64
Install-Time: 31
Job: r-bioc-dada2_1.14.0+dfsg-1.dsc
Machine Architecture: amd64
Package: r-bioc-dada2
Package-Time: 154
Source-Version: 1.14.0+dfsg-1
Space: 10104
Status: successful
Version: 1.14.0+dfsg-1
--------------------------------------------------------------------------------
Finished at 20191121-1041
Build needed 00:02:34, 10104k disc space
RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18091244
Scanning for processes to kill in build PACKAGEBUILD-18091244