r-bioc-decoupler 2.2.2+dfsg-1 source package in Ubuntu
Changelog
r-bioc-decoupler (2.2.2+dfsg-1) unstable; urgency=medium
* New upstream version
* Provide autopkgtest-pkg-r.conf to make sure testthat will be found
* Drop debian/tests/control and rely on autopkgtest-pkg-r
* Exclude test requiring r-bioc-omnipath, r-bioc-fgsea, r-bioc-aucell and
r-bioc-viper
-- Andreas Tille <email address hidden> Tue, 07 Jun 2022 10:06:13 +0200
Upload details
- Uploaded by:
- Debian R Packages Maintainers
- Uploaded to:
- Sid
- Original maintainer:
- Debian R Packages Maintainers
- Architectures:
- all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section |
|---|
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| r-bioc-decoupler_2.2.2+dfsg-1.dsc | 2.2 KiB | bb93cacee9957a48021188a7e598c1332a23c9caaa33663762465b59dcf4e024 |
| r-bioc-decoupler_2.2.2+dfsg.orig.tar.xz | 1.9 MiB | a74943981cd92f8e0b048b35ac2fa8d421b7455eb6012642dca79e94d8d70a4d |
| r-bioc-decoupler_2.2.2+dfsg-1.debian.tar.xz | 2.8 KiB | 1ce5c059abb78395cdff557507a698e337ae422288bb8278cda1350ed753f5e1 |
Available diffs
- diff from 2.2.0+dfsg-1 to 2.2.2+dfsg-1 (2.2 KiB)
No changes file available.
Binary packages built by this source
- r-bioc-decoupler: infer biological activities from omics data
Many methods allow one to extract biological activities from omics
data using information from prior knowledge resources, reducing the
dimensionality for increased statistical power and better interpretability.
DecoupleR is a Bioconductor package containing different
statistical methods to extract these signatures within a unified framework.
decoupleR allows the user to flexibly test any method with any resource.
It incorporates methods that take into account the sign and weight of
network interactions. decoupleR can be used with any omic, as long as its
features can be linked to a biological process based on prior knowledge.
For example, in transcriptomics gene sets regulated by a transcription
factor, or in phospho-proteomics phosphosites that are targeted by a kinase.
