https://launchpad.net/ubuntu/+source/r-bioc-delayedarray/0.12.1+dfsg-1/+build/18472742 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-013 4.4.0-170-generic #199-Ubuntu SMP Thu Nov 14 01:46:18 UTC 2019 aarch64 Buildd toolchain package versions: launchpad-buildd_183 python-lpbuildd_183 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.7 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 24 Dec 11:17:11 ntpdate[1921]: adjust time server 10.211.37.1 offset 0.004977 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18472742 --image-type chroot /home/buildd/filecache-default/f005b6164729459c78307140747b338a2f357aa2 Creating target for build PACKAGEBUILD-18472742 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18472742 Starting target for build PACKAGEBUILD-18472742 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18472742 'deb http://ftpmaster.internal/ubuntu focal main universe' 'deb http://ftpmaster.internal/ubuntu focal-security main universe' 'deb http://ftpmaster.internal/ubuntu focal-updates main universe' 'deb http://ftpmaster.internal/ubuntu focal-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-18472742 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18472742 Updating target for build PACKAGEBUILD-18472742 Get:1 http://ftpmaster.internal/ubuntu focal InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu focal-security InRelease [79.7 kB] Get:3 http://ftpmaster.internal/ubuntu focal-updates InRelease [79.7 kB] Get:4 http://ftpmaster.internal/ubuntu focal-proposed InRelease [107 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main armhf Packages [931 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main Translation-en [499 kB] Get:7 http://ftpmaster.internal/ubuntu focal/universe armhf Packages [8377 kB] Get:8 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5172 kB] Get:9 http://ftpmaster.internal/ubuntu focal-proposed/main armhf Packages [70.3 kB] Get:10 http://ftpmaster.internal/ubuntu focal-proposed/main Translation-en [43.2 kB] Get:11 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf Packages [379 kB] Get:12 http://ftpmaster.internal/ubuntu focal-proposed/universe Translation-en [258 kB] Fetched 16.3 MB in 6s (2621 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libhogweed5 libisl22 libnettle7 libperl5.30 perl-modules-5.30 The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-arm-linux-gnueabihf binutils-common bsdutils bzip2 cpp-9 debianutils fdisk g++-9 gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv gzip hostname libacl1 libapparmor1 libapt-pkg5.90 libasan5 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcryptsetup12 libdebconfclient0 libdevmapper1.02.1 libfdisk1 libgcc-9-dev libgcc1 libgcrypt20 libgnutls30 libgomp1 libjson-c4 libkmod2 liblockfile-bin liblockfile1 liblz4-1 libmount1 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libstdc++-9-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev lsb-base mount ncurses-base ncurses-bin perl perl-base sensible-utils systemd systemd-sysv sysvinit-utils util-linux 90 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. Need to get 57.7 MB of archives. After this operation, 41.0 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu focal/main armhf libc6-dev armhf 2.30-0ubuntu3 [1943 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main armhf libc-dev-bin armhf 2.30-0ubuntu3 [63.6 kB] Get:3 http://ftpmaster.internal/ubuntu focal-proposed/main armhf linux-libc-dev armhf 5.4.0-9.12 [1064 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main armhf libisl22 armhf 0.22-2 [460 kB] Get:5 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libcc1-0 armhf 9.2.1-22ubuntu1 [41.8 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main armhf binutils-arm-linux-gnueabihf armhf 2.33.1-6ubuntu3 [2102 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main armhf libbinutils armhf 2.33.1-6ubuntu3 [315 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main armhf binutils-common armhf 2.33.1-6ubuntu3 [203 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main armhf binutils armhf 2.33.1-6ubuntu3 [3352 B] Get:10 http://ftpmaster.internal/ubuntu focal-proposed/main armhf gcc-9-base armhf 9.2.1-22ubuntu1 [19.1 kB] Get:11 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libgcc1 armhf 1:9.2.1-22ubuntu1 [37.4 kB] Get:12 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libgomp1 armhf 9.2.1-22ubuntu1 [77.4 kB] Get:13 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libatomic1 armhf 9.2.1-22ubuntu1 [7088 B] Get:14 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libasan5 armhf 9.2.1-22ubuntu1 [387 kB] Get:15 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libubsan1 armhf 9.2.1-22ubuntu1 [118 kB] Get:16 http://ftpmaster.internal/ubuntu focal-proposed/main armhf g++-9 armhf 9.2.1-22ubuntu1 [8537 kB] Get:17 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libstdc++-9-dev armhf 9.2.1-22ubuntu1 [1777 kB] Get:18 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libgcc-9-dev armhf 9.2.1-22ubuntu1 [686 kB] Get:19 http://ftpmaster.internal/ubuntu focal-proposed/main armhf gcc-9 armhf 9.2.1-22ubuntu1 [8072 kB] Get:20 http://ftpmaster.internal/ubuntu focal-proposed/main armhf cpp-9 armhf 9.2.1-22ubuntu1 [7473 kB] Get:21 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libstdc++6 armhf 9.2.1-22ubuntu1 [451 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main armhf libc6 armhf 2.30-0ubuntu3 [2144 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main armhf base-files armhf 11ubuntu2 [59.8 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main armhf debianutils armhf 4.9.1 [84.6 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main armhf bash armhf 5.0-5ubuntu1 [576 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main armhf bsdutils armhf 1:2.34-0.1ubuntu4 [58.4 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main armhf gzip armhf 1.10-0ubuntu4 [91.1 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main armhf hostname armhf 3.23 [10.4 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main armhf ncurses-bin armhf 6.1+20191019-1ubuntu1 [163 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main armhf perl-modules-5.30 all 5.30.0-9 [2739 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main armhf libperl5.30 armhf 5.30.0-9 [3286 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main armhf perl armhf 5.30.0-9 [224 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main armhf perl-base armhf 5.30.0-9 [1408 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main armhf bzip2 armhf 1.0.8-2 [32.4 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main armhf libbz2-1.0 armhf 1.0.8-2 [31.0 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main armhf libblkid1 armhf 2.34-0.1ubuntu4 [124 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main armhf libuuid1 armhf 2.34-0.1ubuntu4 [19.8 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main armhf libfdisk1 armhf 2.34-0.1ubuntu4 [163 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main armhf libpcre2-8-0 armhf 10.34-7 [172 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main armhf libselinux1 armhf 3.0-1 [60.1 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main armhf libmount1 armhf 2.34-0.1ubuntu4 [135 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main armhf libncurses6 armhf 6.1+20191019-1ubuntu1 [79.7 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main armhf libtinfo6 armhf 6.1+20191019-1ubuntu1 [72.8 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main armhf libncursesw6 armhf 6.1+20191019-1ubuntu1 [106 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main armhf libsmartcols1 armhf 2.34-0.1ubuntu4 [89.1 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main armhf fdisk armhf 2.34-0.1ubuntu4 [109 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main armhf util-linux armhf 2.34-0.1ubuntu4 [959 kB] Get:48 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libdebconfclient0 armhf 0.250ubuntu2 [5776 B] Get:49 http://ftpmaster.internal/ubuntu focal/main armhf base-passwd armhf 3.5.47 [46.4 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main armhf libc-bin armhf 2.30-0ubuntu3 [496 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main armhf ncurses-base all 6.1+20191019-1ubuntu1 [17.9 kB] Get:52 http://ftpmaster.internal/ubuntu focal-proposed/main armhf lsb-base all 11.1.0ubuntu2 [12.1 kB] Get:53 http://ftpmaster.internal/ubuntu focal/main armhf sysvinit-utils armhf 2.96-1ubuntu1 [19.2 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main armhf liblz4-1 armhf 1.9.2-2 [51.7 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main armhf systemd-sysv armhf 244-3ubuntu1 [9364 B] Get:56 http://ftpmaster.internal/ubuntu focal/main armhf libacl1 armhf 2.2.53-5ubuntu1 [15.8 kB] Get:57 http://ftpmaster.internal/ubuntu focal/main armhf libapparmor1 armhf 2.13.3-7ubuntu1 [29.4 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main armhf libaudit-common all 1:2.8.5-2ubuntu5 [4076 B] Get:59 http://ftpmaster.internal/ubuntu focal/main armhf libcap-ng0 armhf 0.7.9-2.1 [9692 B] Get:60 http://ftpmaster.internal/ubuntu focal/main armhf libaudit1 armhf 1:2.8.5-2ubuntu5 [35.9 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main armhf libcap2 armhf 1:2.27-1 [12.7 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main armhf libudev1 armhf 244-3ubuntu1 [68.8 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main armhf libdevmapper1.02.1 armhf 2:1.02.155-2ubuntu7 [118 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main armhf libjson-c4 armhf 0.13.1+dfsg-6 [25.6 kB] Get:65 http://ftpmaster.internal/ubuntu focal/main armhf libcryptsetup12 armhf 2:2.2.2-1ubuntu1 [163 kB] Get:66 http://ftpmaster.internal/ubuntu focal/main armhf libnettle7 armhf 3.5.1+really3.5.1-2 [126 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main armhf libhogweed5 armhf 3.5.1+really3.5.1-2 [127 kB] Get:68 http://ftpmaster.internal/ubuntu focal/main armhf libp11-kit0 armhf 0.23.18.1-2 [166 kB] Get:69 http://ftpmaster.internal/ubuntu focal/main armhf libtasn1-6 armhf 4.15.0-2 [33.0 kB] Get:70 http://ftpmaster.internal/ubuntu focal/main armhf libgnutls30 armhf 3.6.11.1-2 [732 kB] Get:71 http://ftpmaster.internal/ubuntu focal/main armhf libkmod2 armhf 26-3ubuntu1 [37.0 kB] Get:72 http://ftpmaster.internal/ubuntu focal/main armhf libpam0g armhf 1.3.1-5ubuntu4 [49.6 kB] Get:73 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libseccomp2 armhf 2.4.2-2ubuntu2 [32.5 kB] Get:74 http://ftpmaster.internal/ubuntu focal/main armhf mount armhf 2.34-0.1ubuntu4 [108 kB] Get:75 http://ftpmaster.internal/ubuntu focal/main armhf systemd armhf 244-3ubuntu1 [3526 kB] Get:76 http://ftpmaster.internal/ubuntu focal/main armhf libsystemd0 armhf 244-3ubuntu1 [239 kB] Get:77 http://ftpmaster.internal/ubuntu focal/main armhf libzstd1 armhf 1.4.4+dfsg-1 [207 kB] Get:78 http://ftpmaster.internal/ubuntu focal/main armhf libapt-pkg5.90 armhf 1.9.5 [772 kB] Get:79 http://ftpmaster.internal/ubuntu focal/main armhf libgcrypt20 armhf 1.8.5-3ubuntu1 [364 kB] Get:80 http://ftpmaster.internal/ubuntu focal/main armhf gpgv armhf 2.2.17-3ubuntu1 [170 kB] Get:81 http://ftpmaster.internal/ubuntu focal/main armhf apt armhf 1.9.5 [1237 kB] Get:82 http://ftpmaster.internal/ubuntu focal/main armhf libpam-modules-bin armhf 1.3.1-5ubuntu4 [33.8 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main armhf libpam-modules armhf 1.3.1-5ubuntu4 [232 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main armhf libattr1 armhf 1:2.4.48-5 [11.5 kB] Get:85 http://ftpmaster.internal/ubuntu focal/main armhf libpam-runtime all 1.3.1-5ubuntu4 [37.3 kB] Get:86 http://ftpmaster.internal/ubuntu focal/main armhf libsepol1 armhf 3.0-1 [220 kB] Get:87 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libsemanage-common all 3.0-1 [9880 B] Get:88 http://ftpmaster.internal/ubuntu focal-proposed/main armhf libsemanage1 armhf 3.0-1 [73.9 kB] Get:89 http://ftpmaster.internal/ubuntu focal/main armhf sensible-utils all 0.0.12+nmu1 [15.0 kB] Get:90 http://ftpmaster.internal/ubuntu focal/main armhf libsqlite3-0 armhf 3.30.1-1ubuntu1 [460 kB] Get:91 http://ftpmaster.internal/ubuntu focal/main armhf gpg armhf 2.2.17-3ubuntu1 [421 kB] Get:92 http://ftpmaster.internal/ubuntu focal/main armhf gpgconf armhf 2.2.17-3ubuntu1 [107 kB] Get:93 http://ftpmaster.internal/ubuntu focal/main armhf gpg-agent armhf 2.2.17-3ubuntu1 [195 kB] Get:94 http://ftpmaster.internal/ubuntu focal/main armhf liblockfile-bin armhf 1.16-1.1 [10.5 kB] Get:95 http://ftpmaster.internal/ubuntu focal/main armhf liblockfile1 armhf 1.16-1.1 [5620 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 57.7 MB in 3s (18.6 MB/s) (Reading database ... 12487 files and directories currently installed.) 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RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-18472742 armhf focal-proposed -c chroot:build-PACKAGEBUILD-18472742 --arch=armhf --dist=focal-proposed --nolog r-bioc-delayedarray_0.12.1+dfsg-1.dsc Initiating build PACKAGEBUILD-18472742 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-170-generic #199-Ubuntu SMP Thu Nov 14 01:46:18 UTC 2019 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-013.buildd +==============================================================================+ | r-bioc-delayedarray 0.12.1+dfsg-1 (armhf) 24 Dec 2019 11:18 | +==============================================================================+ Package: r-bioc-delayedarray Version: 0.12.1+dfsg-1 Source Version: 0.12.1+dfsg-1 Distribution: focal-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/r-bioc-delayedarray-9tY_ip/r-bioc-delayedarray-0.12.1+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-delayedarray-9tY_ip' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-18472742/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-bioc-delayedarray_0.12.1+dfsg-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-wO6HRD/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-wO6HRD/apt_archive ./ InRelease Get:2 copy:/<>/resolver-wO6HRD/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-wO6HRD/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-wO6HRD/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-wO6HRD/apt_archive ./ Packages [525 B] Fetched 2858 B in 0s (101 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. 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Merged Build-Depends: debhelper-compat (= 12), dh-r, r-base-dev, r-cran-matrixstats, r-bioc-biocgenerics (>= 0.31.5), r-bioc-s4vectors (>= 0.21.7), r-bioc-iranges (>= 2.17.3), r-bioc-biocparallel, r-cran-matrix Filtered Build-Depends: debhelper-compat (= 12), dh-r, r-base-dev, r-cran-matrixstats, r-bioc-biocgenerics (>= 0.31.5), r-bioc-s4vectors (>= 0.21.7), r-bioc-iranges (>= 2.17.3), r-bioc-biocparallel, r-cran-matrix dpkg-deb: building package 'sbuild-build-depends-r-bioc-delayedarray-dummy' in '/<>/resolver-DdYIRz/apt_archive/sbuild-build-depends-r-bioc-delayedarray-dummy.deb'. Ign:1 copy:/<>/resolver-DdYIRz/apt_archive ./ InRelease Get:2 copy:/<>/resolver-DdYIRz/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-DdYIRz/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-DdYIRz/apt_archive ./ Sources [301 B] Get:5 copy:/<>/resolver-DdYIRz/apt_archive ./ Packages [620 B] Fetched 3040 B in 0s (107 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install r-bioc-delayedarray build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-9 groff-base icu-devtools intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-9-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu-dev libicu63 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libncurses-dev libncurses5-dev libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db pkg-config po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-biocparallel r-bioc-iranges r-bioc-s4vectors r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-lambda.r r-cran-lattice r-cran-matrix r-cran-matrixstats r-cran-snow ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-9-multilib gfortran-9-doc libcoarrays-dev groff liblapack-doc krb5-doc krb5-user icu-doc liblzma-doc ncurses-doc readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk m4-doc apparmor less www-browser libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo r-bioc-biobase r-bioc-genomicranges r-bioc-delayedarray r-bioc-biostrings r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc r-bioc-variantannotation r-bioc-genomicalignments r-bioc-shortread r-cran-codetools r-cran-knitr r-cran-data.table r-bioc-genomicfeatures r-bioc-summarizedexperiment r-bioc-graph r-cran-shiny r-cran-rmarkdown r-cran-jsonlite r-cran-base64enc r-cran-ggplot2 r-cran-rmpi r-cran-rsprng r-cran-rlecuyer Recommended packages: devscripts curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libpng-tools publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl r-recommended r-doc-html r-cran-runit r-cran-batchjobs r-cran-doparallel r-bioc-rsamtools r-cran-batchtools r-cran-rmpi r-bioc-xvector r-bioc-genomicranges r-cran-testit r-cran-codetools r-cran-survival r-cran-testthat libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-9 groff-base icu-devtools intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-9-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu-dev libicu63 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libncurses-dev libncurses5-dev libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db pkg-config po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-biocparallel r-bioc-iranges r-bioc-s4vectors r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-lambda.r r-cran-lattice r-cran-matrix r-cran-matrixstats r-cran-snow sbuild-build-depends-r-bioc-delayedarray-dummy ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 152 newly installed, 0 to remove and 0 not upgraded. Need to get 85.0 MB of archives. After this operation, 230 MB of additional disk space will be used. 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libpcre2-16-0 armhf 10.34-7 [156 kB] Get:123 http://ftpmaster.internal/ubuntu focal/main armhf libpcre2-32-0 armhf 10.34-7 [146 kB] Get:124 http://ftpmaster.internal/ubuntu focal/main armhf libpcre2-posix2 armhf 10.34-7 [5348 B] Get:125 http://ftpmaster.internal/ubuntu focal/main armhf libpcre2-dev armhf 10.34-7 [596 kB] Get:126 http://ftpmaster.internal/ubuntu focal/main armhf libpcre16-3 armhf 2:8.39-12 [128 kB] Get:127 http://ftpmaster.internal/ubuntu focal/main armhf libpcre32-3 armhf 2:8.39-12 [120 kB] Get:128 http://ftpmaster.internal/ubuntu focal/main armhf libpcrecpp0v5 armhf 2:8.39-12 [13.1 kB] Get:129 http://ftpmaster.internal/ubuntu focal/main armhf libpcre3-dev armhf 2:8.39-12 [474 kB] Get:130 http://ftpmaster.internal/ubuntu focal/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1ubuntu3 [166 kB] Get:131 http://ftpmaster.internal/ubuntu focal/main armhf libpng-dev armhf 1.6.37-1 [160 kB] Get:132 http://ftpmaster.internal/ubuntu focal/main armhf libbz2-dev armhf 1.0.8-2 [29.3 kB] Get:133 http://ftpmaster.internal/ubuntu focal/main armhf liblzma-dev armhf 5.2.4-1 [139 kB] Get:134 http://ftpmaster.internal/ubuntu focal/main armhf icu-devtools armhf 63.2-2 [160 kB] Get:135 http://ftpmaster.internal/ubuntu focal/main armhf libicu-dev armhf 63.2-2 [8927 kB] Get:136 http://ftpmaster.internal/ubuntu focal/main armhf pkg-config armhf 0.29.1-0ubuntu3 [42.2 kB] Get:137 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf r-base-dev all 3.6.2-2 [4528 B] Get:138 http://ftpmaster.internal/ubuntu focal/main armhf libfile-which-perl all 1.23-1 [13.8 kB] Get:139 http://ftpmaster.internal/ubuntu focal/universe armhf libswitch-perl all 2.17-2 [18.8 kB] Get:140 http://ftpmaster.internal/ubuntu focal/universe armhf dh-r all 20190917 [32.7 kB] Get:141 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf r-bioc-biocgenerics all 0.32.0-1 [639 kB] Get:142 http://ftpmaster.internal/ubuntu focal/universe armhf r-cran-formatr all 1.7-1 [147 kB] Get:143 http://ftpmaster.internal/ubuntu focal/universe armhf r-cran-lambda.r all 1.2.4-1 [119 kB] Get:144 http://ftpmaster.internal/ubuntu focal/universe armhf r-cran-futile.options all 1.0.1-2 [19.8 kB] Get:145 http://ftpmaster.internal/ubuntu focal/universe armhf r-cran-futile.logger all 1.4.3-3 [102 kB] Get:146 http://ftpmaster.internal/ubuntu focal/universe armhf r-cran-snow all 1:0.4.3-1 [107 kB] Get:147 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf r-bioc-biocparallel armhf 1.20.0-1 [1067 kB] Get:148 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf r-bioc-s4vectors armhf 0.24.1-1 [1932 kB] Get:149 http://ftpmaster.internal/ubuntu focal-proposed/universe armhf r-bioc-iranges armhf 2.20.1-1 [2198 kB] Get:150 http://ftpmaster.internal/ubuntu focal/universe armhf r-cran-lattice armhf 0.20-38-1 [1110 kB] Get:151 http://ftpmaster.internal/ubuntu focal/universe armhf r-cran-matrix armhf 1.2-18-1 [3413 kB] Get:152 http://ftpmaster.internal/ubuntu focal/universe armhf r-cran-matrixstats armhf 0.55.0-1 [600 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 85.0 MB in 3s (26.0 MB/s) Selecting previously unselected package libbsd0:armhf. 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No schema files found: doing nothing. Setting up unzip (6.0-25ubuntu1) ... Setting up libdebhelper-perl (12.7.1ubuntu1) ... Setting up libbrotli1:armhf (1.0.7-5) ... Setting up x11-common (1:7.7+19ubuntu12) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libnghttp2-14:armhf (1.40.0-1) ... Setting up libmagic1:armhf (1:5.37-6) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.37-6) ... Setting up libreadline-dev:armhf (8.0-3) ... Setting up libldap-common (2.4.48+dfsg-1ubuntu3) ... Setting up libjbig0:armhf (2.1-3.1build1) ... Setting up libpcre2-16-0:armhf (10.34-7) ... Setting up libicu63:armhf (63.2-2) ... Setting up libkrb5support0:armhf (1.17-6) ... Setting up libsasl2-modules-db:armhf (2.1.27+dfsg-1build3) ... Setting up zip (3.0-11build1) ... Setting up autotools-dev (20180224.1) ... Setting up libpcre2-32-0:armhf (10.34-7) ... Setting up libblas3:armhf (3.9.0-1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libswitch-perl (2.17-2) ... Setting up libfreetype6:armhf (2.10.1-2) ... Setting up libx11-data (2:1.6.8-1) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2build1) ... Setting up libsigsegv2:armhf (2.12-2) ... Setting up libfribidi0:armhf (1.0.8-2) ... Setting up libpcre32-3:armhf (2:8.39-12) ... Setting up libtcl8.6:armhf (8.6.10+dfsg-1) ... Setting up autopoint (0.19.8.1-10) ... Setting up libwebp6:armhf (0.6.1-2) ... Setting up icu-devtools (63.2-2) ... Setting up pkg-config (0.29.1-0ubuntu3) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up ucf (3.0038+nmu1) ... Setting up libpcre2-posix2:armhf (10.34-7) ... Setting up libk5crypto3:armhf (1.17-6) ... Setting up libjpeg-turbo8:armhf (2.0.3-0ubuntu1) ... Setting up libsasl2-2:armhf (2.1.27+dfsg-1build3) ... Setting up libgfortran5:armhf (9.2.1-22ubuntu1) ... Setting up libroken18-heimdal:armhf (7.7.0+dfsg-1) ... Setting up liblzma-dev:armhf (5.2.4-1) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1ubuntu3) ... Setting up libuchardet0:armhf (0.0.6-3) ... Setting up libncurses5-dev:armhf (6.1+20191019-1ubuntu1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libharfbuzz0b:armhf (2.6.4-1ubuntu1) ... Setting up libthai-data (0.1.28-3) ... Setting up libkrb5-3:armhf (1.17-6) ... Setting up libbsd0:armhf (0.10.0-1) ... Setting up libelf1:armhf (0.176-1.1) ... Setting up libicu-dev:armhf (63.2-2) ... Setting up libxml2:armhf (2.9.4+dfsg1-8ubuntu1) ... Setting up xdg-utils (1.1.3-1ubuntu2) ... Setting up libblas-dev:armhf (3.9.0-1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode Setting up dctrl-tools (2.24-3) ... Setting up libheimbase1-heimdal:armhf (7.7.0+dfsg-1) ... Setting up libbz2-dev:armhf (1.0.8-2) ... Setting up libjpeg8:armhf (8c-2ubuntu8) ... Setting up libfile-stripnondeterminism-perl (1.6.3-1) ... Setting up libpaper1:armhf (1.1.28) ... Creating config file /etc/papersize with new version Setting up libice6:armhf (2:1.0.10-0ubuntu1) ... Setting up libjpeg-turbo8-dev:armhf (2.0.3-0ubuntu1) ... Setting up libxdmcp6:armhf (1:1.1.3-0ubuntu1) ... Setting up liblapack3:armhf (3.9.0-1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libxcb1:armhf (1.13.1-2) ... Setting up libpcre2-dev:armhf (10.34-7) ... Setting up libtool (2.4.6-11) ... Setting up libxcb-render0:armhf (1.13.1-2) ... Setting up libpcre3-dev:armhf (2:8.39-12) ... Setting up fontconfig-config (2.13.1-2ubuntu2) ... Setting up libasn1-8-heimdal:armhf (7.7.0+dfsg-1) ... Setting up libpng-dev:armhf (1.6.37-1) ... Setting up libgfortran-9-dev:armhf (9.2.1-22ubuntu1) ... Setting up m4 (1.4.18-4) ... Setting up libxcb-shm0:armhf (1.13.1-2) ... Setting up libpaper-utils (1.1.28) ... Setting up libhcrypto4-heimdal:armhf (7.7.0+dfsg-1) ... Setting up libthai0:armhf (0.1.28-3) ... Setting up libwind0-heimdal:armhf (7.7.0+dfsg-1) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up liblapack-dev:armhf (3.9.0-1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode Setting up libgssapi-krb5-2:armhf (1.17-6) ... Setting up libcroco3:armhf (0.6.13-1) ... Setting up libssh-4:armhf (0.9.0-1ubuntu5) ... Setting up autoconf (2.69-11ubuntu1) ... Setting up dh-strip-nondeterminism (1.6.3-1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up libx11-6:armhf (2:1.6.8-1) ... Setting up libtiff5:armhf (4.1.0+git191117-1) ... Setting up libfontconfig1:armhf (2.13.1-2ubuntu2) ... Setting up libjpeg8-dev:armhf (8c-2ubuntu8) ... Setting up libsm6:armhf (2:1.2.3-1) ... Setting up libxmuu1:armhf (2:1.1.3-0ubuntu1) ... Setting up automake (1:1.16.1-4ubuntu4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up fontconfig (2.13.1-2ubuntu2) ... Regenerating fonts cache... done. Setting up gettext (0.19.8.1-10) ... Setting up libxrender1:armhf (1:0.9.10-1) ... Setting up gfortran-9 (9.2.1-22ubuntu1) ... Setting up libhx509-5-heimdal:armhf (7.7.0+dfsg-1) ... Setting up libpango-1.0-0:armhf (1.44.7-1) ... Setting up libjpeg-dev:armhf (8c-2ubuntu8) ... Setting up libxext6:armhf (2:1.3.4-0ubuntu1) ... Setting up man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up gfortran (4:9.2.1-3.1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:armhf (1.16.0-4ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxt6:armhf (1:1.1.5-1) ... Setting up xauth (1:1.1-0ubuntu1) ... Setting up libxss1:armhf (1:1.2.3-1) ... Setting up libpangoft2-1.0-0:armhf (1.44.7-1) ... Setting up libpangocairo-1.0-0:armhf (1.44.7-1) ... Setting up libkrb5-26-heimdal:armhf (7.7.0+dfsg-1) ... Setting up libxft2:armhf (2.3.3-0ubuntu1) ... Setting up po-debconf (1.0.21) ... Setting up libtk8.6:armhf (8.6.10-1) ... Setting up libheimntlm0-heimdal:armhf (7.7.0+dfsg-1) ... Setting up libgssapi3-heimdal:armhf (7.7.0+dfsg-1) ... Setting up libldap-2.4-2:armhf (2.4.48+dfsg-1ubuntu3) ... Setting up libcurl4:armhf (7.66.0-1ubuntu1) ... Setting up r-base-core (3.6.2-2) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-futile.options (1.0.1-2) ... Setting up r-cran-lattice (0.20-38-1) ... Setting up r-cran-formatr (1.7-1) ... Setting up r-bioc-biocgenerics (0.32.0-1) ... Setting up r-cran-matrixstats (0.55.0-1) ... Setting up r-base-dev (3.6.2-2) ... Setting up r-cran-lambda.r (1.2.4-1) ... Setting up r-cran-snow (1:0.4.3-1) ... Setting up r-bioc-s4vectors (0.24.1-1) ... Setting up r-cran-futile.logger (1.4.3-3) ... Setting up r-cran-matrix (1.2-18-1) ... Setting up r-bioc-iranges (2.20.1-1) ... Setting up r-bioc-biocparallel (1.20.0-1) ... Setting up debhelper (12.7.1ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up dh-r (20190917) ... Setting up sbuild-build-depends-r-bioc-delayedarray-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.30-0ubuntu3) ... Processing triggers for systemd (244-3ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-170-generic arm64 (armv7l) Toolchain package versions: binutils_2.33.1-6ubuntu3 dpkg-dev_1.19.7ubuntu2 g++-9_9.2.1-22ubuntu1 gcc-9_9.2.1-22ubuntu1 libc6-dev_2.30-0ubuntu3 libstdc++-9-dev_9.2.1-22ubuntu1 libstdc++6_9.2.1-22ubuntu1 linux-libc-dev_5.4.0-9.12 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1 apt_1.9.5 autoconf_2.69-11ubuntu1 automake_1:1.16.1-4ubuntu4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11ubuntu2 base-passwd_3.5.47 bash_5.0-5ubuntu1 binutils_2.33.1-6ubuntu3 binutils-arm-linux-gnueabihf_2.33.1-6ubuntu3 binutils-common_2.33.1-6ubuntu3 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.34-0.1ubuntu4 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110 coreutils_8.30-3ubuntu2 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ncurses-bin_6.1+20191019-1ubuntu1 openssl_1.1.1c-1ubuntu4 optipng_0.7.7-1 passwd_1:4.5-1.1ubuntu4 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6build1 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 pkg-config_0.29.1-0ubuntu3 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu3 r-base-core_3.6.2-2 r-base-dev_3.6.2-2 r-bioc-biocgenerics_0.32.0-1 r-bioc-biocparallel_1.20.0-1 r-bioc-iranges_2.20.1-1 r-bioc-s4vectors_0.24.1-1 r-cran-formatr_1.7-1 r-cran-futile.logger_1.4.3-3 r-cran-futile.options_1.0.1-2 r-cran-lambda.r_1.2.4-1 r-cran-lattice_0.20-38-1 r-cran-matrix_1.2-18-1 r-cran-matrixstats_0.55.0-1 r-cran-snow_1:0.4.3-1 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-delayedarray-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 systemd_244-3ubuntu1 systemd-sysv_244-3ubuntu1 sysvinit-utils_2.96-1ubuntu1 tar_1.30+dfsg-6 tzdata_2019c-3 ubuntu-keyring_2018.09.18.1 ucf_3.0038+nmu1 unzip_6.0-25ubuntu1 util-linux_2.34-0.1ubuntu4 x11-common_1:7.7+19ubuntu12 xauth_1:1.1-0ubuntu1 xdg-utils_1.1.3-1ubuntu2 xz-utils_5.2.4-1 zip_3.0-11build1 zlib1g_1:1.2.11.dfsg-1ubuntu3 zlib1g-dev_1:1.2.11.dfsg-1ubuntu3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue Dec 24 07:27:00 2019 UTC gpgv: using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54 gpgv: issuer "daissi@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-bioc-delayedarray_0.12.1+dfsg-1.dsc dpkg-source: info: extracting r-bioc-delayedarray in r-bioc-delayedarray-0.12.1+dfsg dpkg-source: info: unpacking r-bioc-delayedarray_0.12.1+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-delayedarray_0.12.1+dfsg-1.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-18472742 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-18472742 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-18472742 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package r-bioc-delayedarray dpkg-buildpackage: info: source version 0.12.1+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules build-arch dh build-arch --buildsystem R dh_update_autotools_config -a -O--buildsystem=R dh_autoreconf -a -O--buildsystem=R dh_auto_configure -a -O--buildsystem=R dh_auto_build -a -O--buildsystem=R dh_auto_test -a -O--buildsystem=R create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --buildsystem R dh_testroot -a -O--buildsystem=R dh_prep -a -O--buildsystem=R dh_auto_install -a -O--buildsystem=R I: R packages needed for DEP8: runit, biocgenerics, genefilter I: R Package: DelayedArray Version: 0.12.1 I: Building using R version 3.6.2-2 I: R API version: r-api-3.5 I: Using built-time from d/changelog: Tue, 24 Dec 2019 08:18:53 +0100 mkdir -p /<>/r-bioc-delayedarray-0.12.1\+dfsg/debian/r-bioc-delayedarray/usr/lib/R/site-library R CMD INSTALL -l /<>/r-bioc-delayedarray-0.12.1\+dfsg/debian/r-bioc-delayedarray/usr/lib/R/site-library --clean . "--built-timestamp='Tue, 24 Dec 2019 08:18:53 +0100'" * installing *source* package ‘DelayedArray’ ... ** using staged installation ** libs make[1]: Entering directory '/<>/r-bioc-delayedarray-0.12.1+dfsg/src' gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iBpNOn/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_DelayedArray.c -o R_init_DelayedArray.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iBpNOn/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c S4Vectors_stubs.c -o S4Vectors_stubs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iBpNOn/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c abind.c -o abind.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-iBpNOn/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c compress_atomic_vector.c -o compress_atomic_vector.o gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o DelayedArray.so R_init_DelayedArray.o S4Vectors_stubs.o abind.o compress_atomic_vector.o -L/usr/lib/R/lib -lR make[1]: Leaving directory '/<>/r-bioc-delayedarray-0.12.1+dfsg/src' make[1]: Entering directory '/<>/r-bioc-delayedarray-0.12.1+dfsg/src' make[1]: Leaving directory '/<>/r-bioc-delayedarray-0.12.1+dfsg/src' installing to /<>/r-bioc-delayedarray-0.12.1+dfsg/debian/r-bioc-delayedarray/usr/lib/R/site-library/00LOCK-r-bioc-delayedarray-0.12.1+dfsg/00new/DelayedArray/libs ** R ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘aperm’ in package ‘DelayedArray’ Creating a generic function for ‘sweep’ from package ‘base’ in package ‘DelayedArray’ Creating a new generic function for ‘apply’ in package ‘DelayedArray’ Creating a new generic function for ‘rowsum’ in package ‘DelayedArray’ Creating a generic function for ‘dnorm’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘pnorm’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘qnorm’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘dbinom’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘pbinom’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘qbinom’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘dpois’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘ppois’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘qpois’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘dlogis’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘plogis’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘qlogis’ from package ‘stats’ in package ‘DelayedArray’ Creating a new generic function for ‘rowMaxs’ in package ‘DelayedArray’ Creating a new generic function for ‘colMaxs’ in package ‘DelayedArray’ Creating a new generic function for ‘rowMins’ in package ‘DelayedArray’ Creating a new generic function for ‘colMins’ in package ‘DelayedArray’ Creating a new generic function for ‘rowRanges’ in package ‘DelayedArray’ Creating a new generic function for ‘colRanges’ in package ‘DelayedArray’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DelayedArray) W: Ignoring specified R dependency: R (>= 3.4) I: Using r-cran-matrixstats for Depends:matrixStats I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.31.5) I: Using r-bioc-s4vectors for Depends:S4Vectors (>= 0.21.7) I: Using r-bioc-iranges for Depends:IRanges (>= 2.17.3) I: Using r-bioc-biocparallel for Depends:BiocParallel I: Using r-cran-runit for Recommends:runit I: Using r-bioc-biocgenerics for Recommends:biocgenerics I: Using r-bioc-genefilter for Recommends:genefilter W: Cannot find a debian package for Suggests:HDF5Array I: Using r-bioc-summarizedexperiment for Suggests:SummarizedExperiment W: Cannot find a debian package for Suggests:airway W: Cannot find a debian package for Suggests:pryr W: Cannot find a debian package for Suggests:DelayedMatrixStats I: Using r-cran-knitr for Suggests:knitr W: Cannot find a debian package for Suggests:BiocStyle I: Using r-cran-matrix for Imports:Matrix I: BioConductor API version: r-api-bioc-3.10 dh_installdocs -a -O--buildsystem=R dh_installchangelogs -a -O--buildsystem=R dh_installinit -a -O--buildsystem=R dh_installsystemduser -a -O--buildsystem=R dh_perl -a -O--buildsystem=R dh_link -a -O--buildsystem=R dh_strip_nondeterminism -a -O--buildsystem=R dh_compress -a -O--buildsystem=R dh_fixperms -a -O--buildsystem=R dh_missing -a -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -a -O--buildsystem=R dh_gencontrol -a -O--buildsystem=R dh_md5sums -a -O--buildsystem=R dh_builddeb -a -O--buildsystem=R INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing r-bioc-delayedarray (in debian/r-bioc-delayedarray); do_strip: , oemstrip: pkgstriptranslations: processing r-bioc-delayedarray-dbgsym (in debian/.debhelper/r-bioc-delayedarray/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-bioc-delayedarray/DEBIAN/control, package r-bioc-delayedarray, directory debian/r-bioc-delayedarray pkgstripfiles: Truncating usr/share/doc/r-bioc-delayedarray/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-bioc-delayedarray ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-bioc-delayedarray' in '../r-bioc-delayedarray_0.12.1+dfsg-1_armhf.deb'. pkgstripfiles: processing control file: debian/.debhelper/r-bioc-delayedarray/dbgsym-root/DEBIAN/control, package r-bioc-delayedarray-dbgsym, directory debian/.debhelper/r-bioc-delayedarray/dbgsym-root dpkg-deb: building package 'r-bioc-delayedarray-dbgsym' in 'debian/.debhelper/scratch-space/build-r-bioc-delayedarray/r-bioc-delayedarray-dbgsym_0.12.1+dfsg-1_armhf.deb'. Renaming r-bioc-delayedarray-dbgsym_0.12.1+dfsg-1_armhf.deb to r-bioc-delayedarray-dbgsym_0.12.1+dfsg-1_armhf.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../r-bioc-delayedarray_0.12.1+dfsg-1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20191224-1120 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-bioc-delayedarray_0.12.1+dfsg-1_armhf.changes: ------------------------------------------------ Format: 1.8 Date: Tue, 24 Dec 2019 08:18:53 +0100 Source: r-bioc-delayedarray Binary: r-bioc-delayedarray Architecture: armhf Version: 0.12.1+dfsg-1 Distribution: focal-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Dylan Aïssi Description: r-bioc-delayedarray - BioConductor delayed operations on array-like objects Changes: r-bioc-delayedarray (0.12.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version Checksums-Sha1: 7891ab95e569d141939bf99cabe1eca36078e976 28444 r-bioc-delayedarray-dbgsym_0.12.1+dfsg-1_armhf.ddeb 200f0dc0601a55d9d1204472b6143e2deb47776a 9110 r-bioc-delayedarray_0.12.1+dfsg-1_armhf.buildinfo 6b7b09b974d82f592395b188fdaedbec26e9734a 1661372 r-bioc-delayedarray_0.12.1+dfsg-1_armhf.deb Checksums-Sha256: 7d95e0010287ba5af0764829feaae9ad8ef0b0411801f08e442b3535b1bdd99c 28444 r-bioc-delayedarray-dbgsym_0.12.1+dfsg-1_armhf.ddeb 2dbe6d26c65e9fe0ba945352db0df4b80ace7a5f648a98f3c586b9fbe387bee5 9110 r-bioc-delayedarray_0.12.1+dfsg-1_armhf.buildinfo 63b055d06b0e1db4a13ac736bf929dc5b37cb20a7aab064d1471388027ad380e 1661372 r-bioc-delayedarray_0.12.1+dfsg-1_armhf.deb Files: 194b7899af7d3b103eb9e686cee9bf52 28444 debug optional r-bioc-delayedarray-dbgsym_0.12.1+dfsg-1_armhf.ddeb 3f6d94b5b5535b36e95609f0ec93c5db 9110 gnu-r optional r-bioc-delayedarray_0.12.1+dfsg-1_armhf.buildinfo 03439a7cd7e3fa430e6d3f4f7518e145 1661372 gnu-r optional r-bioc-delayedarray_0.12.1+dfsg-1_armhf.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-bioc-delayedarray_0.12.1+dfsg-1_armhf.deb ------------------------------------------- new debian package, version 2.0. size 1661372 bytes: control archive=2140 bytes. 1228 bytes, 21 lines control 3797 bytes, 41 lines md5sums Package: r-bioc-delayedarray Version: 0.12.1+dfsg-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian R Packages Maintainers Installed-Size: 2635 Depends: r-base-core (>= 3.6.2-2), r-api-3.5, r-api-bioc-3.10, r-cran-matrixstats, r-bioc-biocgenerics (>= 0.31.5), r-bioc-s4vectors (>= 0.21.7), r-bioc-iranges (>= 2.17.3), r-bioc-biocparallel, r-cran-matrix, libc6 (>= 2.4) Recommends: r-cran-runit, r-bioc-genefilter Suggests: r-bioc-summarizedexperiment, r-cran-knitr Section: gnu-r Priority: optional Homepage: https://bioconductor.org/packages/DelayedArray/ Description: BioConductor delayed operations on array-like objects Wrapping an array-like object (typically an on-disk object) in a DelayedArray object allows one to perform common array operations on it without loading the object in memory. 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+------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 5624 Build-Time: 114 Distribution: focal-proposed Host Architecture: armhf Install-Time: 47 Job: r-bioc-delayedarray_0.12.1+dfsg-1.dsc Machine Architecture: arm64 Package: r-bioc-delayedarray Package-Time: 163 Source-Version: 0.12.1+dfsg-1 Space: 5624 Status: successful Version: 0.12.1+dfsg-1 -------------------------------------------------------------------------------- Finished at 20191224-1120 Build needed 00:02:43, 5624k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=armhf PACKAGEBUILD-18472742 Scanning for processes to kill in build PACKAGEBUILD-18472742