https://launchpad.net/ubuntu/+source/r-bioc-delayedarray/0.12.3+dfsg-1/+build/19212264 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-006 4.4.0-177-generic #207-Ubuntu SMP Mon Mar 16 01:17:51 UTC 2020 aarch64 Buildd toolchain package versions: launchpad-buildd_189 python-lpbuildd_189 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.8 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 28 Apr 05:28:23 ntpdate[1882]: adjust time server 10.211.37.1 offset 0.055908 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=groovy --arch=armhf PACKAGEBUILD-19212264 --image-type chroot /home/buildd/filecache-default/a77e1afdcf3761e08e999e63510e3d2f5c5a8a8d Creating target for build PACKAGEBUILD-19212264 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=groovy --arch=armhf PACKAGEBUILD-19212264 Starting target for build PACKAGEBUILD-19212264 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=groovy --arch=armhf PACKAGEBUILD-19212264 'deb http://ftpmaster.internal/ubuntu groovy main universe' 'deb http://ftpmaster.internal/ubuntu groovy-security main universe' 'deb http://ftpmaster.internal/ubuntu groovy-updates main universe' 'deb http://ftpmaster.internal/ubuntu groovy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-19212264 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=groovy --arch=armhf PACKAGEBUILD-19212264 Updating target for build PACKAGEBUILD-19212264 Get:1 http://ftpmaster.internal/ubuntu groovy InRelease [268 kB] Get:2 http://ftpmaster.internal/ubuntu groovy-security InRelease [89.1 kB] Get:3 http://ftpmaster.internal/ubuntu groovy-updates InRelease [89.1 kB] Get:4 http://ftpmaster.internal/ubuntu groovy-proposed InRelease [119 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main armhf Packages [934 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main Translation-en [506 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/universe armhf Packages [8357 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/universe Translation-en [5150 kB] Get:9 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf Packages [93.1 kB] Get:10 http://ftpmaster.internal/ubuntu groovy-proposed/main Translation-en [53.9 kB] Get:11 http://ftpmaster.internal/ubuntu groovy-proposed/universe armhf Packages [680 kB] Get:12 http://ftpmaster.internal/ubuntu groovy-proposed/universe Translation-en [537 kB] Fetched 16.9 MB in 6s (2794 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: base-files cpp-9 dash debconf g++-9 gcc-10-base gcc-9 gcc-9-base libacl1 libasan5 libatomic1 libcap2 libcc1-0 libgcc-9-dev libgcc-s1 libgomp1 libidn2-0 libncurses6 libncursesw6 libperl5.30 libsqlite3-0 libstdc++-9-dev libstdc++6 libtinfo6 libubsan1 make ncurses-base ncurses-bin perl perl-base perl-modules-5.30 31 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 31.8 MB of archives. After this operation, 26.6 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu groovy/main armhf base-files armhf 11ubuntu6 [59.6 kB] Get:2 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libperl5.30 armhf 5.30.0-10 [3295 kB] Get:3 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf perl armhf 5.30.0-10 [224 kB] Get:4 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf perl-base armhf 5.30.0-10 [1408 kB] Get:5 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf perl-modules-5.30 all 5.30.0-10 [2738 kB] Get:6 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf debconf all 1.5.74 [121 kB] Get:7 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf dash armhf 0.5.10.2-7 [79.2 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/main armhf ncurses-bin armhf 6.2-1 [164 kB] Get:9 http://ftpmaster.internal/ubuntu groovy/main armhf ncurses-base all 6.2-1 [18.7 kB] Get:10 http://ftpmaster.internal/ubuntu groovy/main armhf libatomic1 armhf 10-20200425-1ubuntu2 [7204 B] Get:11 http://ftpmaster.internal/ubuntu groovy/main armhf libubsan1 armhf 10-20200425-1ubuntu2 [121 kB] Get:12 http://ftpmaster.internal/ubuntu groovy/main armhf gcc-10-base armhf 10-20200425-1ubuntu2 [19.3 kB] Get:13 http://ftpmaster.internal/ubuntu groovy/main armhf libstdc++6 armhf 10-20200425-1ubuntu2 [440 kB] Get:14 http://ftpmaster.internal/ubuntu groovy/main armhf libgomp1 armhf 10-20200425-1ubuntu2 [86.8 kB] Get:15 http://ftpmaster.internal/ubuntu groovy/main armhf libcc1-0 armhf 10-20200425-1ubuntu2 [34.6 kB] Get:16 http://ftpmaster.internal/ubuntu groovy/main armhf libgcc-s1 armhf 10-20200425-1ubuntu2 [36.2 kB] Get:17 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libacl1 armhf 2.2.53-7 [16.1 kB] Get:18 http://ftpmaster.internal/ubuntu groovy/main armhf libncurses6 armhf 6.2-1 [79.7 kB] Get:19 http://ftpmaster.internal/ubuntu groovy/main armhf libncursesw6 armhf 6.2-1 [106 kB] Get:20 http://ftpmaster.internal/ubuntu groovy/main armhf libtinfo6 armhf 6.2-1 [73.6 kB] Get:21 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libidn2-0 armhf 2.3.0-1 [49.9 kB] Get:22 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libcap2 armhf 1:2.33-1 [15.7 kB] Get:23 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libsqlite3-0 armhf 3.31.1-5 [467 kB] Get:24 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libasan5 armhf 9.3.0-11ubuntu2 [386 kB] Get:25 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf g++-9 armhf 9.3.0-11ubuntu2 [6690 kB] Get:26 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf gcc-9 armhf 9.3.0-11ubuntu2 [6554 kB] Get:27 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libstdc++-9-dev armhf 9.3.0-11ubuntu2 [1783 kB] Get:28 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libgcc-9-dev armhf 9.3.0-11ubuntu2 [687 kB] Get:29 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf cpp-9 armhf 9.3.0-11ubuntu2 [5881 kB] Get:30 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf gcc-9-base armhf 9.3.0-11ubuntu2 [19.4 kB] Get:31 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf make armhf 4.2.1-1.3 [150 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 31.8 MB in 1s (31.2 MB/s) (Reading database ... 12562 files and directories currently installed.) Preparing to unpack .../base-files_11ubuntu6_armhf.deb ... Unpacking base-files (11ubuntu6) over (11ubuntu5) ... Setting up base-files (11ubuntu6) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12562 files and directories currently installed.) Preparing to unpack .../libperl5.30_5.30.0-10_armhf.deb ... Unpacking libperl5.30:armhf (5.30.0-10) over (5.30.0-9build1) ... Preparing to unpack .../perl_5.30.0-10_armhf.deb ... Unpacking perl (5.30.0-10) over (5.30.0-9build1) ... Preparing to unpack .../perl-base_5.30.0-10_armhf.deb ... Unpacking perl-base (5.30.0-10) over (5.30.0-9build1) ... Setting up perl-base (5.30.0-10) ... (Reading database ... 12562 files and directories currently installed.) Preparing to unpack .../perl-modules-5.30_5.30.0-10_all.deb ... Unpacking perl-modules-5.30 (5.30.0-10) over (5.30.0-9build1) ... 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Setting up libperl5.30:armhf (5.30.0-10) ... Setting up libcc1-0:armhf (10-20200425-1ubuntu2) ... Setting up gcc-9-base:armhf (9.3.0-11ubuntu2) ... Setting up libasan5:armhf (9.3.0-11ubuntu2) ... Setting up perl (5.30.0-10) ... Setting up cpp-9 (9.3.0-11ubuntu2) ... Setting up libgcc-9-dev:armhf (9.3.0-11ubuntu2) ... Setting up gcc-9 (9.3.0-11ubuntu2) ... Setting up libstdc++-9-dev:armhf (9.3.0-11ubuntu2) ... Setting up g++-9 (9.3.0-11ubuntu2) ... Processing triggers for libc-bin (2.31-0ubuntu9) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-19212264 armhf groovy-proposed -c chroot:build-PACKAGEBUILD-19212264 --arch=armhf --dist=groovy-proposed --nolog r-bioc-delayedarray_0.12.3+dfsg-1.dsc Initiating build PACKAGEBUILD-19212264 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-177-generic #207-Ubuntu SMP Mon Mar 16 01:17:51 UTC 2020 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-006.buildd +==============================================================================+ | r-bioc-delayedarray 0.12.3+dfsg-1 (armhf) 28 Apr 2020 05:28 | +==============================================================================+ Package: r-bioc-delayedarray Version: 0.12.3+dfsg-1 Source Version: 0.12.3+dfsg-1 Distribution: groovy-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/r-bioc-delayedarray-dpAVgl/r-bioc-delayedarray-0.12.3+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-delayedarray-dpAVgl' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-19212264/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-bioc-delayedarray_0.12.3+dfsg-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-9fl2r8/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-9fl2r8/apt_archive ./ InRelease Get:2 copy:/<>/resolver-9fl2r8/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-9fl2r8/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-9fl2r8/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-9fl2r8/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (72.9 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-9fl2r8/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (71.6 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12562 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper-compat (= 12), dh-r, r-base-dev, r-cran-matrixstats, r-bioc-biocgenerics (>= 0.31.5), r-bioc-s4vectors (>= 0.24.4), r-bioc-iranges (>= 2.17.3), r-bioc-biocparallel, r-cran-matrix Filtered Build-Depends: debhelper-compat (= 12), dh-r, r-base-dev, r-cran-matrixstats, r-bioc-biocgenerics (>= 0.31.5), r-bioc-s4vectors (>= 0.24.4), r-bioc-iranges (>= 2.17.3), r-bioc-biocparallel, r-cran-matrix dpkg-deb: building package 'sbuild-build-depends-r-bioc-delayedarray-dummy' in '/<>/resolver-_RRwjt/apt_archive/sbuild-build-depends-r-bioc-delayedarray-dummy.deb'. Ign:1 copy:/<>/resolver-_RRwjt/apt_archive ./ InRelease Get:2 copy:/<>/resolver-_RRwjt/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-_RRwjt/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-_RRwjt/apt_archive ./ Sources [301 B] Get:5 copy:/<>/resolver-_RRwjt/apt_archive ./ Packages [619 B] Fetched 3039 B in 0s (97.4 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install r-bioc-delayedarray build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-9 groff-base icu-devtools intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libboost-dev libboost1.71-dev libbrotli1 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-9-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu-dev libicu66 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libncurses-dev libncurses5-dev libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db pkg-config po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-biocparallel r-bioc-iranges r-bioc-s4vectors r-cran-bh r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-lambda.r r-cran-lattice r-cran-matrix r-cran-matrixstats r-cran-snow ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-9-multilib gfortran-9-doc libcoarrays-dev groff liblapack-doc libboost-doc libboost1.71-doc libboost-atomic1.71-dev libboost-chrono1.71-dev libboost-container1.71-dev libboost-context1.71-dev libboost-contract1.71-dev libboost-coroutine1.71-dev libboost-date-time1.71-dev libboost-exception1.71-dev libboost-fiber1.71-dev libboost-filesystem1.71-dev libboost-graph1.71-dev libboost-graph-parallel1.71-dev libboost-iostreams1.71-dev libboost-locale1.71-dev libboost-log1.71-dev libboost-math1.71-dev libboost-mpi1.71-dev libboost-mpi-python1.71-dev libboost-numpy1.71-dev libboost-program-options1.71-dev libboost-python1.71-dev libboost-random1.71-dev libboost-regex1.71-dev libboost-serialization1.71-dev libboost-stacktrace1.71-dev libboost-system1.71-dev libboost-test1.71-dev libboost-thread1.71-dev libboost-timer1.71-dev libboost-type-erasure1.71-dev libboost-wave1.71-dev libboost1.71-tools-dev libmpfrc++-dev libntl-dev krb5-doc krb5-user icu-doc liblzma-doc ncurses-doc readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk m4-doc apparmor less www-browser libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo r-bioc-biobase r-bioc-genomicranges r-bioc-delayedarray r-bioc-biostrings r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc r-bioc-variantannotation r-bioc-genomicalignments r-bioc-shortread r-cran-codetools r-cran-knitr r-cran-data.table r-bioc-genomicfeatures r-bioc-summarizedexperiment r-bioc-graph r-cran-shiny r-cran-rmarkdown r-cran-jsonlite r-cran-base64enc r-cran-ggplot2 r-cran-rmpi r-cran-rsprng r-cran-rlecuyer Recommended packages: devscripts curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libpng-tools publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl r-recommended r-doc-html r-cran-runit r-cran-batchjobs r-cran-doparallel r-bioc-rsamtools r-cran-batchtools r-cran-rmpi r-bioc-xvector r-bioc-genomicranges r-cran-testit r-cran-codetools r-cran-survival r-cran-testthat libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-9 groff-base icu-devtools intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libboost-dev libboost1.71-dev libbrotli1 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-9-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu-dev libicu66 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libncurses-dev libncurses5-dev libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db pkg-config po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-biocparallel r-bioc-iranges r-bioc-s4vectors r-cran-bh r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-lambda.r r-cran-lattice r-cran-matrix r-cran-matrixstats r-cran-snow sbuild-build-depends-r-bioc-delayedarray-dummy ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 155 newly installed, 0 to remove and 0 not upgraded. Need to get 92.7 MB of archives. After this operation, 369 MB of additional disk space will be used. Get:1 copy:/<>/resolver-_RRwjt/apt_archive ./ sbuild-build-depends-r-bioc-delayedarray-dummy 0.invalid.0 [948 B] Get:2 http://ftpmaster.internal/ubuntu groovy/main armhf libbsd0 armhf 0.10.0-1 [49.8 kB] Get:3 http://ftpmaster.internal/ubuntu groovy/main armhf bsdmainutils armhf 11.1.2ubuntu3 [176 kB] Get:4 http://ftpmaster.internal/ubuntu groovy/main armhf libuchardet0 armhf 0.0.6-3build1 [62.4 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main armhf groff-base armhf 1.22.4-4build1 [759 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main armhf libpipeline1 armhf 1.5.2-2build1 [23.5 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/main armhf man-db armhf 2.9.1-1 [1077 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/main armhf libmagic-mgc armhf 1:5.38-4 [218 kB] Get:9 http://ftpmaster.internal/ubuntu groovy/main armhf libmagic1 armhf 1:5.38-4 [68.3 kB] Get:10 http://ftpmaster.internal/ubuntu groovy/main armhf file armhf 1:5.38-4 [22.4 kB] Get:11 http://ftpmaster.internal/ubuntu groovy/main armhf libelf1 armhf 0.176-1.1build1 [41.3 kB] Get:12 http://ftpmaster.internal/ubuntu groovy/main armhf libexpat1 armhf 2.2.9-1build1 [53.3 kB] Get:13 http://ftpmaster.internal/ubuntu groovy/main armhf libfribidi0 armhf 1.0.8-2 [21.8 kB] Get:14 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libglib2.0-0 armhf 2.64.2-1 [1123 kB] Get:15 http://ftpmaster.internal/ubuntu groovy/main armhf libicu66 armhf 66.1-2ubuntu2 [8222 kB] Get:16 http://ftpmaster.internal/ubuntu groovy/main armhf libxml2 armhf 2.9.10+dfsg-5 [546 kB] Get:17 http://ftpmaster.internal/ubuntu groovy/main armhf ucf all 3.0038+nmu1 [51.6 kB] Get:18 http://ftpmaster.internal/ubuntu groovy/main armhf gettext-base armhf 0.19.8.1-10build1 [46.0 kB] Get:19 http://ftpmaster.internal/ubuntu groovy/main armhf libkrb5support0 armhf 1.17-6ubuntu4 [28.0 kB] Get:20 http://ftpmaster.internal/ubuntu groovy/main armhf libk5crypto3 armhf 1.17-6ubuntu4 [79.4 kB] Get:21 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armhf libldap-common all 2.4.49+dfsg-2ubuntu1 [17.3 kB] Get:81 http://ftpmaster.internal/ubuntu groovy/main armhf libldap-2.4-2 armhf 2.4.49+dfsg-2ubuntu1 [134 kB] Get:82 http://ftpmaster.internal/ubuntu groovy/main armhf libnghttp2-14 armhf 1.40.0-1build1 [67.8 kB] Get:83 http://ftpmaster.internal/ubuntu groovy/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2build1 [49.1 kB] Get:84 http://ftpmaster.internal/ubuntu groovy/main armhf libssh-4 armhf 0.9.3-2ubuntu2 [147 kB] Get:85 http://ftpmaster.internal/ubuntu groovy/main armhf libcurl4 armhf 7.68.0-1ubuntu2 [202 kB] Get:86 http://ftpmaster.internal/ubuntu groovy/main armhf libjpeg-turbo8 armhf 2.0.3-0ubuntu1 [90.4 kB] Get:87 http://ftpmaster.internal/ubuntu groovy/main armhf libjpeg8 armhf 8c-2ubuntu8 [2202 B] Get:88 http://ftpmaster.internal/ubuntu groovy/main armhf libgfortran5 armhf 10-20200425-1ubuntu2 [251 kB] Get:89 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf liblapack3 armhf 3.9.0-2 [1734 kB] Get:90 http://ftpmaster.internal/ubuntu groovy/main armhf fontconfig armhf 2.13.1-2ubuntu3 [170 kB] Get:91 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libgraphite2-3 armhf 1.3.14-1 [62.7 kB] Get:92 http://ftpmaster.internal/ubuntu groovy/main armhf libharfbuzz0b armhf 2.6.4-1ubuntu4 [347 kB] Get:93 http://ftpmaster.internal/ubuntu groovy/main armhf libthai-data all 0.1.28-3 [134 kB] Get:94 http://ftpmaster.internal/ubuntu groovy/main armhf libdatrie1 armhf 0.2.12-3 [15.2 kB] Get:95 http://ftpmaster.internal/ubuntu groovy/main armhf libthai0 armhf 0.1.28-3 [14.7 kB] Get:96 http://ftpmaster.internal/ubuntu groovy/main armhf libpango-1.0-0 armhf 1.44.7-2ubuntu4 [144 kB] Get:97 http://ftpmaster.internal/ubuntu groovy/main armhf libpangoft2-1.0-0 armhf 1.44.7-2ubuntu4 [28.6 kB] Get:98 http://ftpmaster.internal/ubuntu groovy/main armhf libpangocairo-1.0-0 armhf 1.44.7-2ubuntu4 [20.7 kB] Get:99 http://ftpmaster.internal/ubuntu groovy/main armhf libtcl8.6 armhf 8.6.10+dfsg-1 [798 kB] Get:100 http://ftpmaster.internal/ubuntu groovy/main armhf libjbig0 armhf 2.1-3.1build1 [23.9 kB] Get:101 http://ftpmaster.internal/ubuntu groovy/main armhf libwebp6 armhf 0.6.1-2 [152 kB] Get:102 http://ftpmaster.internal/ubuntu groovy/main armhf libtiff5 armhf 4.1.0+git191117-2build1 [143 kB] Get:103 http://ftpmaster.internal/ubuntu groovy/main armhf libxft2 armhf 2.3.3-0ubuntu1 [32.5 kB] Get:104 http://ftpmaster.internal/ubuntu groovy/main armhf x11-common all 1:7.7+19ubuntu14 [22.3 kB] Get:105 http://ftpmaster.internal/ubuntu groovy/main armhf libxss1 armhf 1:1.2.3-1 [7512 B] Get:106 http://ftpmaster.internal/ubuntu groovy/main armhf libtk8.6 armhf 8.6.10-1 [630 kB] Get:107 http://ftpmaster.internal/ubuntu groovy/main armhf libice6 armhf 2:1.0.10-0ubuntu1 [34.1 kB] Get:108 http://ftpmaster.internal/ubuntu groovy/main armhf libsm6 armhf 2:1.2.3-1 [14.1 kB] Get:109 http://ftpmaster.internal/ubuntu groovy/main armhf libxt6 armhf 1:1.1.5-1 [129 kB] Get:110 http://ftpmaster.internal/ubuntu groovy/universe armhf r-base-core armhf 3.6.3-2 [24.2 MB] Get:111 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libgfortran-9-dev armhf 9.3.0-11ubuntu2 [306 kB] Get:112 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf gfortran-9 armhf 9.3.0-11ubuntu2 [6257 kB] Get:113 http://ftpmaster.internal/ubuntu groovy/main armhf gfortran armhf 4:9.3.0-1ubuntu2 [1372 B] Get:114 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libblas-dev armhf 3.9.0-2 [109 kB] Get:115 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf liblapack-dev armhf 3.9.0-2 [1813 kB] Get:116 http://ftpmaster.internal/ubuntu groovy/main armhf libncurses-dev armhf 6.2-1 [301 kB] Get:117 http://ftpmaster.internal/ubuntu groovy/main armhf libncurses5-dev armhf 6.2-1 [976 B] Get:118 http://ftpmaster.internal/ubuntu groovy/main armhf libreadline-dev armhf 8.0-4 [128 kB] Get:119 http://ftpmaster.internal/ubuntu groovy/main armhf libjpeg-turbo8-dev armhf 2.0.3-0ubuntu1 [203 kB] Get:120 http://ftpmaster.internal/ubuntu groovy/main armhf libjpeg8-dev armhf 8c-2ubuntu8 [1554 B] Get:121 http://ftpmaster.internal/ubuntu groovy/main armhf libjpeg-dev armhf 8c-2ubuntu8 [1554 B] Get:122 http://ftpmaster.internal/ubuntu groovy/main armhf libpcre2-16-0 armhf 10.34-7 [156 kB] Get:123 http://ftpmaster.internal/ubuntu groovy/main armhf libpcre2-32-0 armhf 10.34-7 [146 kB] Get:124 http://ftpmaster.internal/ubuntu groovy/main armhf libpcre2-posix2 armhf 10.34-7 [5348 B] Get:125 http://ftpmaster.internal/ubuntu groovy/main armhf libpcre2-dev armhf 10.34-7 [596 kB] Get:126 http://ftpmaster.internal/ubuntu groovy/main armhf libpcre16-3 armhf 2:8.39-12build1 [128 kB] Get:127 http://ftpmaster.internal/ubuntu groovy/main armhf libpcre32-3 armhf 2:8.39-12build1 [121 kB] Get:128 http://ftpmaster.internal/ubuntu groovy/main armhf libpcrecpp0v5 armhf 2:8.39-12build1 [13.2 kB] Get:129 http://ftpmaster.internal/ubuntu groovy/main armhf libpcre3-dev armhf 2:8.39-12build1 [476 kB] Get:130 http://ftpmaster.internal/ubuntu groovy/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2ubuntu1 [150 kB] Get:131 http://ftpmaster.internal/ubuntu groovy/main armhf libpng-dev armhf 1.6.37-2 [160 kB] Get:132 http://ftpmaster.internal/ubuntu groovy/main armhf libbz2-dev armhf 1.0.8-2 [29.3 kB] Get:133 http://ftpmaster.internal/ubuntu groovy/main armhf liblzma-dev armhf 5.2.4-1 [139 kB] Get:134 http://ftpmaster.internal/ubuntu groovy/main armhf icu-devtools armhf 66.1-2ubuntu2 [167 kB] Get:135 http://ftpmaster.internal/ubuntu groovy/main armhf libicu-dev armhf 66.1-2ubuntu2 [9208 kB] Get:136 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf pkg-config armhf 0.29.2-1ubuntu1 [43.4 kB] Get:137 http://ftpmaster.internal/ubuntu groovy/universe armhf r-base-dev all 3.6.3-2 [4524 B] Get:138 http://ftpmaster.internal/ubuntu groovy/main armhf libfile-which-perl all 1.23-1 [13.8 kB] Get:139 http://ftpmaster.internal/ubuntu groovy/universe armhf libswitch-perl all 2.17-2 [18.8 kB] Get:140 http://ftpmaster.internal/ubuntu groovy/universe armhf dh-r all 20200314 [35.5 kB] Get:141 http://ftpmaster.internal/ubuntu groovy/main armhf libboost1.71-dev armhf 1.71.0-6ubuntu6 [9068 kB] Get:142 http://ftpmaster.internal/ubuntu groovy/main armhf libboost-dev armhf 1.71.0.0ubuntu2 [3596 B] Get:143 http://ftpmaster.internal/ubuntu groovy/universe armhf r-bioc-biocgenerics all 0.32.0-1 [639 kB] Get:144 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-formatr all 1.7-1 [147 kB] Get:145 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-lambda.r all 1.2.4-1 [119 kB] Get:146 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-futile.options all 1.0.1-2 [19.8 kB] Get:147 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-futile.logger all 1.4.3-3 [102 kB] Get:148 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-snow all 1:0.4.3-1 [107 kB] Get:149 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-bh all 1.66.0-1 [5116 B] Get:150 http://ftpmaster.internal/ubuntu groovy/universe armhf r-bioc-biocparallel armhf 1.20.1-1build1 [1068 kB] Get:151 http://ftpmaster.internal/ubuntu groovy-proposed/universe armhf r-bioc-s4vectors armhf 0.24.4-1 [1933 kB] Get:152 http://ftpmaster.internal/ubuntu groovy/universe armhf r-bioc-iranges armhf 2.20.2-1 [2199 kB] Get:153 http://ftpmaster.internal/ubuntu groovy-proposed/universe armhf r-cran-lattice armhf 0.20-41-1 [1122 kB] Get:154 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-matrix armhf 1.2-18-1 [3413 kB] Get:155 http://ftpmaster.internal/ubuntu groovy-proposed/universe armhf r-cran-matrixstats armhf 0.56.0-1 [604 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 92.7 MB in 3s (31.2 MB/s) Selecting previously unselected package libbsd0:armhf. 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Setting up libsasl2-modules-db:armhf (2.1.27+dfsg-2) ... Setting up zip (3.0-11build1) ... Setting up autotools-dev (20180224.1) ... Setting up libpcre2-32-0:armhf (10.34-7) ... Setting up libblas3:armhf (3.9.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libswitch-perl (2.17-2) ... Setting up libfreetype6:armhf (2.10.1-2) ... Setting up libx11-data (2:1.6.9-2ubuntu1) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2build1) ... Setting up libsigsegv2:armhf (2.12-2) ... Setting up libfribidi0:armhf (1.0.8-2) ... Setting up libpcre32-3:armhf (2:8.39-12build1) ... Setting up libtcl8.6:armhf (8.6.10+dfsg-1) ... Setting up autopoint (0.19.8.1-10build1) ... Setting up libwebp6:armhf (0.6.1-2) ... Setting up icu-devtools (66.1-2ubuntu2) ... Setting up pkg-config (0.29.2-1ubuntu1) ... Setting up fonts-dejavu-core (2.37-1) ... 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Setting up xdg-utils (1.1.3-2ubuntu1) ... Setting up libblas-dev:armhf (3.9.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode Setting up dctrl-tools (2.24-3) ... Setting up libheimbase1-heimdal:armhf (7.7.0+dfsg-1ubuntu1) ... Setting up libbz2-dev:armhf (1.0.8-2) ... Setting up libjpeg8:armhf (8c-2ubuntu8) ... Setting up libfile-stripnondeterminism-perl (1.8.0-1) ... Setting up r-cran-bh (1.66.0-1) ... Setting up libpaper1:armhf (1.1.28) ... Creating config file /etc/papersize with new version Setting up libice6:armhf (2:1.0.10-0ubuntu1) ... Setting up libjpeg-turbo8-dev:armhf (2.0.3-0ubuntu1) ... Setting up libxdmcp6:armhf (1:1.1.3-0ubuntu1) ... Setting up liblapack3:armhf (3.9.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libxcb1:armhf (1.14-2) ... Setting up libpcre2-dev:armhf (10.34-7) ... Setting up libtool (2.4.6-14) ... Setting up libxcb-render0:armhf (1.14-2) ... Setting up libpcre3-dev:armhf (2:8.39-12build1) ... Setting up fontconfig-config (2.13.1-2ubuntu3) ... Setting up libasn1-8-heimdal:armhf (7.7.0+dfsg-1ubuntu1) ... Setting up libpng-dev:armhf (1.6.37-2) ... Setting up libgfortran-9-dev:armhf (9.3.0-11ubuntu2) ... Setting up m4 (1.4.18-4) ... Setting up libxcb-shm0:armhf (1.14-2) ... Setting up libpaper-utils (1.1.28) ... Setting up libhcrypto4-heimdal:armhf (7.7.0+dfsg-1ubuntu1) ... Setting up libthai0:armhf (0.1.28-3) ... Setting up libwind0-heimdal:armhf (7.7.0+dfsg-1ubuntu1) ... Setting up bsdmainutils (11.1.2ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up liblapack-dev:armhf (3.9.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode Setting up libgssapi-krb5-2:armhf (1.17-6ubuntu4) ... Setting up libcroco3:armhf (0.6.13-1) ... Setting up libssh-4:armhf (0.9.3-2ubuntu2) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.8.0-1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4build1) ... Setting up libx11-6:armhf (2:1.6.9-2ubuntu1) ... Setting up libtiff5:armhf (4.1.0+git191117-2build1) ... Setting up libfontconfig1:armhf (2.13.1-2ubuntu3) ... Setting up libjpeg8-dev:armhf (8c-2ubuntu8) ... Setting up libsm6:armhf (2:1.2.3-1) ... Setting up libxmuu1:armhf (2:1.1.3-0ubuntu1) ... Setting up automake (1:1.16.1-4ubuntu6) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up fontconfig (2.13.1-2ubuntu3) ... Regenerating fonts cache... done. Setting up gettext (0.19.8.1-10build1) ... Setting up libxrender1:armhf (1:0.9.10-1) ... Setting up gfortran-9 (9.3.0-11ubuntu2) ... Setting up libhx509-5-heimdal:armhf (7.7.0+dfsg-1ubuntu1) ... Setting up libpango-1.0-0:armhf (1.44.7-2ubuntu4) ... Setting up libjpeg-dev:armhf (8c-2ubuntu8) ... Setting up libxext6:armhf (2:1.3.4-0ubuntu1) ... Setting up man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up gfortran (4:9.3.0-1ubuntu2) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:armhf (1.16.0-4ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxt6:armhf (1:1.1.5-1) ... Setting up xauth (1:1.1-0ubuntu1) ... Setting up libxss1:armhf (1:1.2.3-1) ... Setting up libpangoft2-1.0-0:armhf (1.44.7-2ubuntu4) ... Setting up libpangocairo-1.0-0:armhf (1.44.7-2ubuntu4) ... Setting up libkrb5-26-heimdal:armhf (7.7.0+dfsg-1ubuntu1) ... Setting up libxft2:armhf (2.3.3-0ubuntu1) ... Setting up po-debconf (1.0.21) ... Setting up libtk8.6:armhf (8.6.10-1) ... Setting up libheimntlm0-heimdal:armhf (7.7.0+dfsg-1ubuntu1) ... Setting up libgssapi3-heimdal:armhf (7.7.0+dfsg-1ubuntu1) ... Setting up libldap-2.4-2:armhf (2.4.49+dfsg-2ubuntu1) ... Setting up libcurl4:armhf (7.68.0-1ubuntu2) ... Setting up r-base-core (3.6.3-2) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-futile.options (1.0.1-2) ... Setting up r-cran-lattice (0.20-41-1) ... Setting up r-cran-formatr (1.7-1) ... Setting up r-bioc-biocgenerics (0.32.0-1) ... Setting up r-cran-matrixstats (0.56.0-1) ... Setting up r-base-dev (3.6.3-2) ... Setting up r-cran-lambda.r (1.2.4-1) ... Setting up r-cran-snow (1:0.4.3-1) ... Setting up r-bioc-s4vectors (0.24.4-1) ... Setting up r-cran-futile.logger (1.4.3-3) ... Setting up r-cran-matrix (1.2-18-1) ... Setting up r-bioc-iranges (2.20.2-1) ... Setting up r-bioc-biocparallel (1.20.1-1build1) ... Setting up dh-autoreconf (19) ... Setting up debhelper (13ubuntu1) ... Setting up dh-r (20200314) ... Setting up sbuild-build-depends-r-bioc-delayedarray-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.31-0ubuntu9) ... Processing triggers for systemd (245.4-4ubuntu3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-177-generic arm64 (armv7l) Toolchain package versions: binutils_2.34-6ubuntu1 dpkg-dev_1.19.7ubuntu3 g++-9_9.3.0-11ubuntu2 gcc-9_9.3.0-11ubuntu2 libc6-dev_2.31-0ubuntu9 libstdc++-9-dev_9.3.0-11ubuntu2 libstdc++6_10-20200425-1ubuntu2 linux-libc-dev_5.4.0-26.30 Package versions: adduser_3.118ubuntu2 advancecomp_2.1-2.1build1 apt_2.0.2 autoconf_2.69-11.1 automake_1:1.16.1-4ubuntu6 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu6 base-passwd_3.5.47 bash_5.0-6ubuntu1 binutils_2.34-6ubuntu1 binutils-arm-linux-gnueabihf_2.34-6ubuntu1 binutils-common_2.34-6ubuntu1 bsdmainutils_11.1.2ubuntu3 bsdutils_1:2.34-0.1ubuntu9 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110ubuntu1 coreutils_8.30-3ubuntu2 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libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.4.0-26.30 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu5 logsave_1.45.5-2ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.2.1-1.3 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mount_2.34-0.1ubuntu9 ncurses-base_6.2-1 ncurses-bin_6.2-1 openssl_1.1.1f-1ubuntu2 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu5 patch_2.7.6-6 perl_5.30.0-10 perl-base_5.30.0-10 perl-modules-5.30_5.30.0-10 pinentry-curses_1.1.0-3build1 pkg-config_0.29.2-1ubuntu1 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-1ubuntu2 r-base-core_3.6.3-2 r-base-dev_3.6.3-2 r-bioc-biocgenerics_0.32.0-1 r-bioc-biocparallel_1.20.1-1build1 r-bioc-iranges_2.20.2-1 r-bioc-s4vectors_0.24.4-1 r-cran-bh_1.66.0-1 r-cran-formatr_1.7-1 r-cran-futile.logger_1.4.3-3 r-cran-futile.options_1.0.1-2 r-cran-lambda.r_1.2.4-1 r-cran-lattice_0.20-41-1 r-cran-matrix_1.2-18-1 r-cran-matrixstats_0.56.0-1 r-cran-snow_1:0.4.3-1 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-delayedarray-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 systemd_245.4-4ubuntu3 systemd-sysv_245.4-4ubuntu3 systemd-timesyncd_245.4-4ubuntu3 sysvinit-utils_2.96-2.1ubuntu1 tar_1.30+dfsg-7 tzdata_2019c-3ubuntu1 ubuntu-keyring_2020.02.11.2 ucf_3.0038+nmu1 unzip_6.0-25ubuntu1 util-linux_2.34-0.1ubuntu9 x11-common_1:7.7+19ubuntu14 xauth_1:1.1-0ubuntu1 xdg-utils_1.1.3-2ubuntu1 xz-utils_5.2.4-1 zip_3.0-11build1 zlib1g_1:1.2.11.dfsg-2ubuntu1 zlib1g-dev_1:1.2.11.dfsg-2ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue Apr 14 12:19:17 2020 UTC gpgv: using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-bioc-delayedarray_0.12.3+dfsg-1.dsc dpkg-source: info: extracting r-bioc-delayedarray in r-bioc-delayedarray-0.12.3+dfsg dpkg-source: info: unpacking r-bioc-delayedarray_0.12.3+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-delayedarray_0.12.3+dfsg-1.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-19212264 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-19212264 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-19212264 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package r-bioc-delayedarray dpkg-buildpackage: info: source version 0.12.3+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary-arch dh binary-arch --buildsystem R dh_update_autotools_config -a -O--buildsystem=R dh_autoreconf -a -O--buildsystem=R dh_auto_configure -a -O--buildsystem=R dh_auto_build -a -O--buildsystem=R dh_auto_test -a -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=R dh_prep -a -O--buildsystem=R dh_auto_install -a -O--buildsystem=R I: R packages needed for DEP8: runit, biocgenerics, genefilter I: R Package: DelayedArray Version: 0.12.3 I: Building using R version 3.6.3-2 I: R API version: r-api-3.5 I: Using built-time from d/changelog: Tue, 14 Apr 2020 14:10:05 +0200 mkdir -p /<>/r-bioc-delayedarray-0.12.3\+dfsg/debian/r-bioc-delayedarray/usr/lib/R/site-library R CMD INSTALL -l /<>/r-bioc-delayedarray-0.12.3\+dfsg/debian/r-bioc-delayedarray/usr/lib/R/site-library --clean . "--built-timestamp='Tue, 14 Apr 2020 14:10:05 +0200'" * installing *source* package ‘DelayedArray’ ... ** using staged installation ** libs make[1]: Entering directory '/<>/r-bioc-delayedarray-0.12.3+dfsg/src' gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-r74U5b/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_DelayedArray.c -o R_init_DelayedArray.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-r74U5b/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c S4Vectors_stubs.c -o S4Vectors_stubs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-r74U5b/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c abind.c -o abind.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-r74U5b/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c array_selection.c -o array_selection.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-r74U5b/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c compress_atomic_vector.c -o compress_atomic_vector.o gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o DelayedArray.so R_init_DelayedArray.o S4Vectors_stubs.o abind.o array_selection.o compress_atomic_vector.o -L/usr/lib/R/lib -lR make[1]: Leaving directory '/<>/r-bioc-delayedarray-0.12.3+dfsg/src' make[1]: Entering directory '/<>/r-bioc-delayedarray-0.12.3+dfsg/src' make[1]: Leaving directory '/<>/r-bioc-delayedarray-0.12.3+dfsg/src' installing to /<>/r-bioc-delayedarray-0.12.3+dfsg/debian/r-bioc-delayedarray/usr/lib/R/site-library/00LOCK-r-bioc-delayedarray-0.12.3+dfsg/00new/DelayedArray/libs ** R ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘aperm’ in package ‘DelayedArray’ Creating a generic function for ‘sweep’ from package ‘base’ in package ‘DelayedArray’ Creating a new generic function for ‘apply’ in package ‘DelayedArray’ Creating a new generic function for ‘rowsum’ in package ‘DelayedArray’ Creating a generic function for ‘dnorm’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘pnorm’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘qnorm’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘dbinom’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘pbinom’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘qbinom’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘dpois’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘ppois’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘qpois’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘dlogis’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘plogis’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘qlogis’ from package ‘stats’ in package ‘DelayedArray’ Creating a new generic function for ‘rowMaxs’ in package ‘DelayedArray’ Creating a new generic function for ‘colMaxs’ in package ‘DelayedArray’ Creating a new generic function for ‘rowMins’ in package ‘DelayedArray’ Creating a new generic function for ‘colMins’ in package ‘DelayedArray’ Creating a new generic function for ‘rowRanges’ in package ‘DelayedArray’ Creating a new generic function for ‘colRanges’ in package ‘DelayedArray’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DelayedArray) W: Ignoring specified R dependency: R (>= 3.4) I: Using r-cran-matrixstats for Depends:matrixStats I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.31.5) I: Using r-bioc-s4vectors for Depends:S4Vectors (>= 0.24.4) I: Using r-bioc-iranges for Depends:IRanges (>= 2.17.3) I: Using r-bioc-biocparallel for Depends:BiocParallel I: Using r-cran-runit for Recommends:runit I: Using r-bioc-biocgenerics for Recommends:biocgenerics I: Using r-bioc-genefilter for Recommends:genefilter W: Cannot find a debian package for Suggests:HDF5Array I: Using r-bioc-summarizedexperiment for Suggests:SummarizedExperiment W: Cannot find a debian package for Suggests:airway W: Cannot find a debian package for Suggests:pryr W: Cannot find a debian package for Suggests:DelayedMatrixStats I: Using r-cran-knitr for Suggests:knitr W: Cannot find a debian package for Suggests:BiocStyle I: Using r-cran-matrix for Imports:Matrix I: Using r-bioc-s4vectors for LinkingTo:S4Vectors I: BioConductor API version: r-api-bioc-3.10 dh_installdocs -a -O--buildsystem=R dh_installchangelogs -a -O--buildsystem=R dh_installinit -a -O--buildsystem=R dh_installsystemduser -a -O--buildsystem=R dh_perl -a -O--buildsystem=R dh_link -a -O--buildsystem=R dh_strip_nondeterminism -a -O--buildsystem=R dh_compress -a -O--buildsystem=R dh_fixperms -a -O--buildsystem=R dh_missing -a -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -a -O--buildsystem=R dh_gencontrol -a -O--buildsystem=R dh_md5sums -a -O--buildsystem=R dh_builddeb -a -O--buildsystem=R INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing r-bioc-delayedarray (in debian/r-bioc-delayedarray); do_strip: , oemstrip: pkgstriptranslations: processing r-bioc-delayedarray-dbgsym (in debian/.debhelper/r-bioc-delayedarray/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-bioc-delayedarray/DEBIAN/control, package r-bioc-delayedarray, directory debian/r-bioc-delayedarray pkgstripfiles: processing control file: debian/.debhelper/r-bioc-delayedarray/dbgsym-root/DEBIAN/control, package r-bioc-delayedarray-dbgsym, directory debian/.debhelper/r-bioc-delayedarray/dbgsym-root dpkg-deb: building package 'r-bioc-delayedarray-dbgsym' in 'debian/.debhelper/scratch-space/build-r-bioc-delayedarray/r-bioc-delayedarray-dbgsym_0.12.3+dfsg-1_armhf.deb'. pkgstripfiles: Truncating usr/share/doc/r-bioc-delayedarray/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-bioc-delayedarray ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-bioc-delayedarray' in '../r-bioc-delayedarray_0.12.3+dfsg-1_armhf.deb'. Renaming r-bioc-delayedarray-dbgsym_0.12.3+dfsg-1_armhf.deb to r-bioc-delayedarray-dbgsym_0.12.3+dfsg-1_armhf.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../r-bioc-delayedarray_0.12.3+dfsg-1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20200428-0531 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-bioc-delayedarray_0.12.3+dfsg-1_armhf.changes: ------------------------------------------------ Format: 1.8 Date: Tue, 14 Apr 2020 14:10:05 +0200 Source: r-bioc-delayedarray Binary: r-bioc-delayedarray Architecture: armhf Version: 0.12.3+dfsg-1 Distribution: groovy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Dylan Aïssi Description: r-bioc-delayedarray - BioConductor delayed operations on array-like objects Changes: r-bioc-delayedarray (0.12.3+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Testsuite: autopkgtest-pkg-r (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) Checksums-Sha1: 2ac0d265ba6e4a8662f8686863c9ea4da7f0228a 35604 r-bioc-delayedarray-dbgsym_0.12.3+dfsg-1_armhf.ddeb 259146d0a3731325a654e4bfb1f1c97a502ca880 9519 r-bioc-delayedarray_0.12.3+dfsg-1_armhf.buildinfo 02c6048e014be23809212b26d631218aacf8bf03 1673544 r-bioc-delayedarray_0.12.3+dfsg-1_armhf.deb Checksums-Sha256: 30cbf608ef09cd23eaf693a8642ca3851206f238608dd3a95d74697d7c4a206e 35604 r-bioc-delayedarray-dbgsym_0.12.3+dfsg-1_armhf.ddeb a5f1375f860d7642551a06c33d368d1d9090935ef21d3966c638cf97f672566b 9519 r-bioc-delayedarray_0.12.3+dfsg-1_armhf.buildinfo acdc1c3c9f3e5c2102d4e2f18a2bb7f11e7632c88d73dea3bf1f9a424316fcb4 1673544 r-bioc-delayedarray_0.12.3+dfsg-1_armhf.deb Files: 249f241d61351b782bc112004ed523fa 35604 debug optional r-bioc-delayedarray-dbgsym_0.12.3+dfsg-1_armhf.ddeb 7b782483592b5489696df6ab3bcfbb7f 9519 gnu-r optional r-bioc-delayedarray_0.12.3+dfsg-1_armhf.buildinfo 6b4bc573041476ebe72f932ed9986159 1673544 gnu-r optional r-bioc-delayedarray_0.12.3+dfsg-1_armhf.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-bioc-delayedarray_0.12.3+dfsg-1_armhf.deb ------------------------------------------- new debian package, version 2.0. size 1673544 bytes: control archive=2136 bytes. 1228 bytes, 21 lines control 3791 bytes, 41 lines md5sums Package: r-bioc-delayedarray Version: 0.12.3+dfsg-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian R Packages Maintainers Installed-Size: 2654 Depends: r-base-core (>= 3.6.3-2), r-api-3.5, r-api-bioc-3.10, r-cran-matrixstats, r-bioc-biocgenerics (>= 0.31.5), r-bioc-s4vectors (>= 0.24.4), r-bioc-iranges (>= 2.17.3), r-bioc-biocparallel, r-cran-matrix, libc6 (>= 2.4) Recommends: r-cran-runit, r-bioc-genefilter Suggests: r-bioc-summarizedexperiment, r-cran-knitr Section: gnu-r Priority: optional Homepage: https://bioconductor.org/packages/DelayedArray/ Description: BioConductor delayed operations on array-like objects Wrapping an array-like object (typically an on-disk object) in a DelayedArray object allows one to perform common array operations on it without loading the object in memory. 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requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 5704 Build-Time: 114 Distribution: groovy-proposed Host Architecture: armhf Install-Time: 51 Job: r-bioc-delayedarray_0.12.3+dfsg-1.dsc Machine Architecture: arm64 Package: r-bioc-delayedarray Package-Time: 167 Source-Version: 0.12.3+dfsg-1 Space: 5704 Status: successful Version: 0.12.3+dfsg-1 -------------------------------------------------------------------------------- Finished at 20200428-0531 Build needed 00:02:47, 5704k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=groovy --arch=armhf PACKAGEBUILD-19212264 Scanning for processes to kill in build PACKAGEBUILD-19212264