https://launchpad.net/ubuntu/+source/r-bioc-delayedarray/0.12.3+dfsg-1/+build/19212265 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-ppc64el-005 4.4.0-177-generic #207-Ubuntu SMP Mon Mar 16 01:16:18 UTC 2020 ppc64le Buildd toolchain package versions: launchpad-buildd_189 python-lpbuildd_189 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.8 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 28 Apr 04:03:37 ntpdate[1912]: adjust time server 10.211.37.1 offset 0.116023 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=groovy --arch=ppc64el PACKAGEBUILD-19212265 --image-type chroot /home/buildd/filecache-default/2b938910cc1b05b915dfd011059e884e9b102147 Creating target for build PACKAGEBUILD-19212265 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=groovy --arch=ppc64el PACKAGEBUILD-19212265 Starting target for build PACKAGEBUILD-19212265 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=groovy --arch=ppc64el PACKAGEBUILD-19212265 'deb http://ftpmaster.internal/ubuntu groovy main universe' 'deb http://ftpmaster.internal/ubuntu groovy-security main universe' 'deb http://ftpmaster.internal/ubuntu groovy-updates main universe' 'deb http://ftpmaster.internal/ubuntu groovy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-19212265 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=groovy --arch=ppc64el PACKAGEBUILD-19212265 Updating target for build PACKAGEBUILD-19212265 Get:1 http://ftpmaster.internal/ubuntu groovy InRelease [268 kB] Get:2 http://ftpmaster.internal/ubuntu groovy-security InRelease [89.1 kB] Get:3 http://ftpmaster.internal/ubuntu groovy-updates InRelease [89.1 kB] Get:4 http://ftpmaster.internal/ubuntu groovy-proposed InRelease [119 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main ppc64el Packages [936 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main Translation-en [506 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/universe ppc64el Packages [8437 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/universe Translation-en [5150 kB] Get:9 http://ftpmaster.internal/ubuntu groovy-proposed/main ppc64el Packages [93.4 kB] Get:10 http://ftpmaster.internal/ubuntu groovy-proposed/main Translation-en [54.1 kB] Get:11 http://ftpmaster.internal/ubuntu groovy-proposed/universe ppc64el Packages [693 kB] Get:12 http://ftpmaster.internal/ubuntu groovy-proposed/universe Translation-en [550 kB] Fetched 17.0 MB in 4s (4716 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: base-files cpp-9 dash debconf g++-9 gcc-10-base gcc-9 gcc-9-base libacl1 libasan5 libatomic1 libcap2 libcc1-0 libgcc-9-dev libgcc-s1 libgomp1 libidn2-0 libitm1 liblsan0 libncurses6 libncursesw6 libperl5.30 libquadmath0 libsqlite3-0 libstdc++-9-dev libstdc++6 libtinfo6 libtsan0 libubsan1 make ncurses-base ncurses-bin perl perl-base perl-modules-5.30 35 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 37.2 MB of archives. After this operation, 11.3 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu groovy/main ppc64el base-files ppc64el 11ubuntu6 [60.2 kB] Get:2 http://ftpmaster.internal/ubuntu groovy-proposed/main ppc64el libperl5.30 ppc64el 5.30.0-10 [3913 kB] Get:3 http://ftpmaster.internal/ubuntu groovy-proposed/main ppc64el perl ppc64el 5.30.0-10 [224 kB] Get:4 http://ftpmaster.internal/ubuntu groovy-proposed/main ppc64el perl-base ppc64el 5.30.0-10 [1494 kB] Get:5 http://ftpmaster.internal/ubuntu groovy-proposed/main ppc64el perl-modules-5.30 all 5.30.0-10 [2738 kB] Get:6 http://ftpmaster.internal/ubuntu groovy-proposed/main ppc64el debconf all 1.5.74 [121 kB] Get:7 http://ftpmaster.internal/ubuntu groovy-proposed/main ppc64el dash ppc64el 0.5.10.2-7 [100 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/main ppc64el ncurses-bin ppc64el 6.2-1 [180 kB] Get:9 http://ftpmaster.internal/ubuntu groovy/main ppc64el ncurses-base all 6.2-1 [18.7 kB] Get:10 http://ftpmaster.internal/ubuntu groovy/main ppc64el libatomic1 ppc64el 10-20200425-1ubuntu2 [9936 B] Get:11 http://ftpmaster.internal/ubuntu groovy/main ppc64el libubsan1 ppc64el 10-20200425-1ubuntu2 [149 kB] Get:12 http://ftpmaster.internal/ubuntu groovy/main ppc64el libtsan0 ppc64el 10-20200425-1ubuntu2 [326 kB] Get:13 http://ftpmaster.internal/ubuntu groovy/main ppc64el gcc-10-base ppc64el 10-20200425-1ubuntu2 [19.3 kB] Get:14 http://ftpmaster.internal/ubuntu groovy/main ppc64el libstdc++6 ppc64el 10-20200425-1ubuntu2 [546 kB] Get:15 http://ftpmaster.internal/ubuntu groovy/main ppc64el libquadmath0 ppc64el 10-20200425-1ubuntu2 [153 kB] Get:16 http://ftpmaster.internal/ubuntu groovy/main ppc64el liblsan0 ppc64el 10-20200425-1ubuntu2 [156 kB] Get:17 http://ftpmaster.internal/ubuntu groovy/main ppc64el libitm1 ppc64el 10-20200425-1ubuntu2 [28.5 kB] Get:18 http://ftpmaster.internal/ubuntu groovy/main ppc64el libgomp1 ppc64el 10-20200425-1ubuntu2 [108 kB] Get:19 http://ftpmaster.internal/ubuntu groovy/main ppc64el libcc1-0 ppc64el 10-20200425-1ubuntu2 [41.9 kB] Get:20 http://ftpmaster.internal/ubuntu groovy/main ppc64el libgcc-s1 ppc64el 10-20200425-1ubuntu2 [30.3 kB] Get:21 http://ftpmaster.internal/ubuntu groovy-proposed/main ppc64el libacl1 ppc64el 2.2.53-7 [20.5 kB] Get:22 http://ftpmaster.internal/ubuntu groovy/main ppc64el libncurses6 ppc64el 6.2-1 [120 kB] Get:23 http://ftpmaster.internal/ubuntu groovy/main ppc64el libncursesw6 ppc64el 6.2-1 [152 kB] Get:24 http://ftpmaster.internal/ubuntu groovy/main ppc64el libtinfo6 ppc64el 6.2-1 [102 kB] Get:25 http://ftpmaster.internal/ubuntu groovy-proposed/main ppc64el libidn2-0 ppc64el 2.3.0-1 [55.8 kB] Get:26 http://ftpmaster.internal/ubuntu groovy-proposed/main ppc64el libcap2 ppc64el 1:2.33-1 [18.0 kB] Get:27 http://ftpmaster.internal/ubuntu groovy-proposed/main ppc64el libsqlite3-0 ppc64el 3.31.1-5 [577 kB] Get:28 http://ftpmaster.internal/ubuntu groovy-proposed/main ppc64el libasan5 ppc64el 9.3.0-11ubuntu2 [408 kB] Get:29 http://ftpmaster.internal/ubuntu groovy-proposed/main ppc64el g++-9 ppc64el 9.3.0-11ubuntu2 [7748 kB] Get:30 http://ftpmaster.internal/ubuntu groovy-proposed/main ppc64el gcc-9 ppc64el 9.3.0-11ubuntu2 [7557 kB] Get:31 http://ftpmaster.internal/ubuntu groovy-proposed/main ppc64el libstdc++-9-dev ppc64el 9.3.0-11ubuntu2 [1753 kB] Get:32 http://ftpmaster.internal/ubuntu groovy-proposed/main ppc64el libgcc-9-dev ppc64el 9.3.0-11ubuntu2 [1260 kB] Get:33 http://ftpmaster.internal/ubuntu groovy-proposed/main ppc64el cpp-9 ppc64el 9.3.0-11ubuntu2 [6835 kB] Get:34 http://ftpmaster.internal/ubuntu groovy-proposed/main ppc64el gcc-9-base ppc64el 9.3.0-11ubuntu2 [19.4 kB] Get:35 http://ftpmaster.internal/ubuntu groovy-proposed/main ppc64el make ppc64el 4.2.1-1.3 [171 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 37.2 MB in 1s (65.9 MB/s) (Reading database ... 12761 files and directories currently installed.) Preparing to unpack .../base-files_11ubuntu6_ppc64el.deb ... Unpacking base-files (11ubuntu6) over (11ubuntu5) ... Setting up base-files (11ubuntu6) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12761 files and directories currently installed.) Preparing to unpack .../libperl5.30_5.30.0-10_ppc64el.deb ... Unpacking libperl5.30:ppc64el (5.30.0-10) over (5.30.0-9build1) ... Preparing to unpack .../perl_5.30.0-10_ppc64el.deb ... Unpacking perl (5.30.0-10) over (5.30.0-9build1) ... Preparing to unpack .../perl-base_5.30.0-10_ppc64el.deb ... Unpacking perl-base (5.30.0-10) over (5.30.0-9build1) ... Setting up perl-base (5.30.0-10) ... (Reading database ... 12761 files and directories currently installed.) Preparing to unpack .../perl-modules-5.30_5.30.0-10_all.deb ... Unpacking perl-modules-5.30 (5.30.0-10) over (5.30.0-9build1) ... 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Unpacking libgcc-9-dev:ppc64el (9.3.0-11ubuntu2) over (9.3.0-10ubuntu2) ... Preparing to unpack .../7-cpp-9_9.3.0-11ubuntu2_ppc64el.deb ... Unpacking cpp-9 (9.3.0-11ubuntu2) over (9.3.0-10ubuntu2) ... Preparing to unpack .../8-gcc-9-base_9.3.0-11ubuntu2_ppc64el.deb ... Unpacking gcc-9-base:ppc64el (9.3.0-11ubuntu2) over (9.3.0-10ubuntu2) ... Preparing to unpack .../9-make_4.2.1-1.3_ppc64el.deb ... Unpacking make (4.2.1-1.3) over (4.2.1-1.2) ... Setting up perl-modules-5.30 (5.30.0-10) ... Setting up libsqlite3-0:ppc64el (3.31.1-5) ... Setting up libgomp1:ppc64el (10-20200425-1ubuntu2) ... Setting up libcap2:ppc64el (1:2.33-1) ... Setting up make (4.2.1-1.3) ... Setting up libncurses6:ppc64el (6.2-1) ... Setting up libquadmath0:ppc64el (10-20200425-1ubuntu2) ... Setting up libatomic1:ppc64el (10-20200425-1ubuntu2) ... Setting up libncursesw6:ppc64el (6.2-1) ... Setting up libubsan1:ppc64el (10-20200425-1ubuntu2) ... Setting up libperl5.30:ppc64el (5.30.0-10) ... Setting up libcc1-0:ppc64el (10-20200425-1ubuntu2) ... Setting up liblsan0:ppc64el (10-20200425-1ubuntu2) ... Setting up libitm1:ppc64el (10-20200425-1ubuntu2) ... Setting up gcc-9-base:ppc64el (9.3.0-11ubuntu2) ... Setting up libtsan0:ppc64el (10-20200425-1ubuntu2) ... Setting up libasan5:ppc64el (9.3.0-11ubuntu2) ... Setting up perl (5.30.0-10) ... Setting up cpp-9 (9.3.0-11ubuntu2) ... Setting up libgcc-9-dev:ppc64el (9.3.0-11ubuntu2) ... Setting up gcc-9 (9.3.0-11ubuntu2) ... Setting up libstdc++-9-dev:ppc64el (9.3.0-11ubuntu2) ... Setting up g++-9 (9.3.0-11ubuntu2) ... Processing triggers for libc-bin (2.31-0ubuntu9) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-19212265 ppc64el groovy-proposed -c chroot:build-PACKAGEBUILD-19212265 --arch=ppc64el --dist=groovy-proposed --nolog r-bioc-delayedarray_0.12.3+dfsg-1.dsc Initiating build PACKAGEBUILD-19212265 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-177-generic #207-Ubuntu SMP Mon Mar 16 01:16:18 UTC 2020 ppc64le sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-ppc64el-005.buildd +==============================================================================+ | r-bioc-delayedarray 0.12.3+dfsg-1 (ppc64el) 28 Apr 2020 04:03 | +==============================================================================+ Package: r-bioc-delayedarray Version: 0.12.3+dfsg-1 Source Version: 0.12.3+dfsg-1 Distribution: groovy-proposed Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el I: NOTICE: Log filtering will replace 'build/r-bioc-delayedarray-3yu2aM/r-bioc-delayedarray-0.12.3+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-delayedarray-3yu2aM' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-19212265/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-bioc-delayedarray_0.12.3+dfsg-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-LQnroa/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-LQnroa/apt_archive ./ InRelease Get:2 copy:/<>/resolver-LQnroa/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-LQnroa/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-LQnroa/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-LQnroa/apt_archive ./ Packages [528 B] Fetched 2861 B in 0s (165 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-LQnroa/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12761 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper-compat (= 12), dh-r, r-base-dev, r-cran-matrixstats, r-bioc-biocgenerics (>= 0.31.5), r-bioc-s4vectors (>= 0.24.4), r-bioc-iranges (>= 2.17.3), r-bioc-biocparallel, r-cran-matrix Filtered Build-Depends: debhelper-compat (= 12), dh-r, r-base-dev, r-cran-matrixstats, r-bioc-biocgenerics (>= 0.31.5), r-bioc-s4vectors (>= 0.24.4), r-bioc-iranges (>= 2.17.3), r-bioc-biocparallel, r-cran-matrix dpkg-deb: building package 'sbuild-build-depends-r-bioc-delayedarray-dummy' in '/<>/resolver-oifX2H/apt_archive/sbuild-build-depends-r-bioc-delayedarray-dummy.deb'. Ign:1 copy:/<>/resolver-oifX2H/apt_archive ./ InRelease Get:2 copy:/<>/resolver-oifX2H/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-oifX2H/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-oifX2H/apt_archive ./ Sources [301 B] Get:5 copy:/<>/resolver-oifX2H/apt_archive ./ Packages [623 B] Fetched 3043 B in 0s (163 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install r-bioc-delayedarray build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-9 groff-base icu-devtools intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libboost-dev libboost1.71-dev libbrotli1 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-9-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu-dev libicu66 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libncurses-dev libncurses5-dev libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db pkg-config po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-biocparallel r-bioc-iranges r-bioc-s4vectors r-cran-bh r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-lambda.r r-cran-lattice r-cran-matrix r-cran-matrixstats r-cran-snow ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc gfortran-9-doc libcoarrays-dev groff liblapack-doc libboost-doc libboost1.71-doc libboost-atomic1.71-dev libboost-chrono1.71-dev libboost-container1.71-dev libboost-context1.71-dev libboost-contract1.71-dev libboost-coroutine1.71-dev libboost-date-time1.71-dev libboost-exception1.71-dev libboost-fiber1.71-dev libboost-filesystem1.71-dev libboost-graph1.71-dev libboost-graph-parallel1.71-dev libboost-iostreams1.71-dev libboost-locale1.71-dev libboost-log1.71-dev libboost-math1.71-dev libboost-mpi1.71-dev libboost-mpi-python1.71-dev libboost-numpy1.71-dev libboost-program-options1.71-dev libboost-python1.71-dev libboost-random1.71-dev libboost-regex1.71-dev libboost-serialization1.71-dev libboost-stacktrace1.71-dev libboost-system1.71-dev libboost-test1.71-dev libboost-thread1.71-dev libboost-timer1.71-dev libboost-type-erasure1.71-dev libboost-wave1.71-dev libboost1.71-tools-dev libmpfrc++-dev libntl-dev krb5-doc krb5-user icu-doc liblzma-doc ncurses-doc readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk m4-doc apparmor less www-browser libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo r-bioc-biobase r-bioc-genomicranges r-bioc-delayedarray r-bioc-biostrings r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc r-bioc-variantannotation r-bioc-genomicalignments r-bioc-shortread r-cran-codetools r-cran-knitr r-cran-data.table r-bioc-genomicfeatures r-bioc-summarizedexperiment r-bioc-graph r-cran-shiny r-cran-rmarkdown r-cran-jsonlite r-cran-base64enc r-cran-ggplot2 r-cran-rmpi r-cran-rsprng r-cran-rlecuyer Recommended packages: devscripts curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libpng-tools publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl r-recommended r-doc-html r-cran-runit r-cran-batchjobs r-cran-doparallel r-bioc-rsamtools r-cran-batchtools r-cran-rmpi r-bioc-xvector r-bioc-genomicranges r-cran-testit r-cran-codetools r-cran-survival r-cran-testthat libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-9 groff-base icu-devtools intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libboost-dev libboost1.71-dev libbrotli1 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-9-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu-dev libicu66 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libncurses-dev libncurses5-dev libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db pkg-config po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-biocparallel r-bioc-iranges r-bioc-s4vectors r-cran-bh r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-lambda.r r-cran-lattice r-cran-matrix r-cran-matrixstats r-cran-snow sbuild-build-depends-r-bioc-delayedarray-dummy ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 155 newly installed, 0 to remove and 0 not upgraded. Need to get 103 MB of archives. After this operation, 454 MB of additional disk space will be used. Get:1 copy:/<>/resolver-oifX2H/apt_archive ./ sbuild-build-depends-r-bioc-delayedarray-dummy 0.invalid.0 [948 B] Get:2 http://ftpmaster.internal/ubuntu groovy/main ppc64el libbsd0 ppc64el 0.10.0-1 [55.1 kB] Get:3 http://ftpmaster.internal/ubuntu groovy/main ppc64el bsdmainutils ppc64el 11.1.2ubuntu3 [187 kB] Get:4 http://ftpmaster.internal/ubuntu groovy/main ppc64el libuchardet0 ppc64el 0.0.6-3build1 [67.9 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main ppc64el groff-base ppc64el 1.22.4-4build1 [923 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main ppc64el libpipeline1 ppc64el 1.5.2-2build1 [28.9 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/main ppc64el man-db ppc64el 2.9.1-1 [1143 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/main ppc64el libmagic-mgc ppc64el 1:5.38-4 [218 kB] Get:9 http://ftpmaster.internal/ubuntu groovy/main ppc64el libmagic1 ppc64el 1:5.38-4 [93.1 kB] Get:10 http://ftpmaster.internal/ubuntu groovy/main ppc64el file ppc64el 1:5.38-4 [24.2 kB] Get:11 http://ftpmaster.internal/ubuntu groovy/main ppc64el libelf1 ppc64el 0.176-1.1build1 [53.4 kB] Get:12 http://ftpmaster.internal/ubuntu groovy/main ppc64el libexpat1 ppc64el 2.2.9-1build1 [77.6 kB] Get:13 http://ftpmaster.internal/ubuntu groovy/main ppc64el libfribidi0 ppc64el 1.0.8-2 [24.9 kB] Get:14 http://ftpmaster.internal/ubuntu groovy-proposed/main ppc64el libglib2.0-0 ppc64el 2.64.2-1 [1381 kB] Get:15 http://ftpmaster.internal/ubuntu groovy/main ppc64el libicu66 ppc64el 66.1-2ubuntu2 [8595 kB] Get:16 http://ftpmaster.internal/ubuntu groovy/main ppc64el libxml2 ppc64el 2.9.10+dfsg-5 [671 kB] Get:17 http://ftpmaster.internal/ubuntu groovy/main ppc64el ucf all 3.0038+nmu1 [51.6 kB] Get:18 http://ftpmaster.internal/ubuntu groovy/main ppc64el gettext-base ppc64el 0.19.8.1-10build1 [52.5 kB] Get:19 http://ftpmaster.internal/ubuntu groovy/main ppc64el libkrb5support0 ppc64el 1.17-6ubuntu4 [34.9 kB] Get:20 http://ftpmaster.internal/ubuntu groovy/main ppc64el libk5crypto3 ppc64el 1.17-6ubuntu4 [102 kB] Get:21 http://ftpmaster.internal/ubuntu groovy/main ppc64el libkeyutils1 ppc64el 1.6.1-2ubuntu1 [11.3 kB] Get:22 http://ftpmaster.internal/ubuntu groovy/main ppc64el libkrb5-3 ppc64el 1.17-6ubuntu4 [371 kB] Get:23 http://ftpmaster.internal/ubuntu groovy/main ppc64el libgssapi-krb5-2 ppc64el 1.17-6ubuntu4 [135 kB] Get:24 http://ftpmaster.internal/ubuntu groovy/main ppc64el libpsl5 ppc64el 0.21.0-1ubuntu1 [53.2 kB] Get:25 http://ftpmaster.internal/ubuntu groovy/main ppc64el libxau6 ppc64el 1:1.0.9-0ubuntu1 [7876 B] Get:26 http://ftpmaster.internal/ubuntu groovy/main ppc64el libxdmcp6 ppc64el 1:1.1.3-0ubuntu1 [11.8 kB] Get:27 http://ftpmaster.internal/ubuntu groovy/main ppc64el libxcb1 ppc64el 1.14-2 [50.2 kB] Get:28 http://ftpmaster.internal/ubuntu groovy/main ppc64el libx11-data all 2:1.6.9-2ubuntu1 [113 kB] Get:29 http://ftpmaster.internal/ubuntu groovy/main ppc64el libx11-6 ppc64el 2:1.6.9-2ubuntu1 [631 kB] Get:30 http://ftpmaster.internal/ubuntu groovy/main ppc64el libxext6 ppc64el 2:1.3.4-0ubuntu1 [35.1 kB] Get:31 http://ftpmaster.internal/ubuntu groovy/main ppc64el libxmuu1 ppc64el 2:1.1.3-0ubuntu1 [10.2 kB] Get:32 http://ftpmaster.internal/ubuntu groovy/main ppc64el xauth ppc64el 1:1.1-0ubuntu1 [28.2 kB] Get:33 http://ftpmaster.internal/ubuntu groovy/main ppc64el libsigsegv2 ppc64el 2.12-2 [13.9 kB] Get:34 http://ftpmaster.internal/ubuntu groovy/main ppc64el m4 ppc64el 1.4.18-4 [210 kB] Get:35 http://ftpmaster.internal/ubuntu groovy/main ppc64el autoconf all 2.69-11.1 [321 kB] Get:36 http://ftpmaster.internal/ubuntu groovy/main ppc64el autotools-dev all 20180224.1 [39.6 kB] Get:37 http://ftpmaster.internal/ubuntu groovy/main ppc64el automake all 1:1.16.1-4ubuntu6 [522 kB] Get:38 http://ftpmaster.internal/ubuntu groovy/main ppc64el autopoint all 0.19.8.1-10build1 [412 kB] Get:39 http://ftpmaster.internal/ubuntu groovy/main ppc64el dctrl-tools ppc64el 2.24-3 [64.6 kB] Get:40 http://ftpmaster.internal/ubuntu groovy/main ppc64el libtool all 2.4.6-14 [161 kB] Get:41 http://ftpmaster.internal/ubuntu groovy/main ppc64el dh-autoreconf all 19 [16.1 kB] Get:42 http://ftpmaster.internal/ubuntu groovy-proposed/main ppc64el libdebhelper-perl all 13ubuntu1 [62.5 kB] Get:43 http://ftpmaster.internal/ubuntu groovy/main ppc64el libarchive-zip-perl all 1.68-1 [90.2 kB] Get:44 http://ftpmaster.internal/ubuntu groovy/main ppc64el libsub-override-perl all 0.09-2 [9532 B] Get:45 http://ftpmaster.internal/ubuntu groovy-proposed/main ppc64el libfile-stripnondeterminism-perl all 1.8.0-1 [16.2 kB] Get:46 http://ftpmaster.internal/ubuntu groovy-proposed/main ppc64el dh-strip-nondeterminism all 1.8.0-1 [5228 B] Get:47 http://ftpmaster.internal/ubuntu groovy/main ppc64el dwz ppc64el 0.13-5 [136 kB] Get:48 http://ftpmaster.internal/ubuntu groovy/main ppc64el libcroco3 ppc64el 0.6.13-1 [92.1 kB] Get:49 http://ftpmaster.internal/ubuntu groovy/main ppc64el gettext ppc64el 0.19.8.1-10build1 [959 kB] Get:50 http://ftpmaster.internal/ubuntu groovy/main ppc64el intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:51 http://ftpmaster.internal/ubuntu groovy/main ppc64el po-debconf all 1.0.21 [233 kB] Get:52 http://ftpmaster.internal/ubuntu groovy-proposed/main ppc64el debhelper all 13ubuntu1 [877 kB] Get:53 http://ftpmaster.internal/ubuntu groovy/main ppc64el zip ppc64el 3.0-11build1 [170 kB] Get:54 http://ftpmaster.internal/ubuntu groovy/main ppc64el unzip ppc64el 6.0-25ubuntu1 [173 kB] Get:55 http://ftpmaster.internal/ubuntu groovy/main ppc64el libpaper1 ppc64el 1.1.28 [13.2 kB] Get:56 http://ftpmaster.internal/ubuntu groovy/main ppc64el libpaper-utils ppc64el 1.1.28 [8688 B] Get:57 http://ftpmaster.internal/ubuntu groovy/main ppc64el xdg-utils all 1.1.3-2ubuntu1 [61.6 kB] Get:58 http://ftpmaster.internal/ubuntu groovy-proposed/main ppc64el libblas3 ppc64el 3.9.0-2 [211 kB] Get:59 http://ftpmaster.internal/ubuntu groovy/main ppc64el libfreetype6 ppc64el 2.10.1-2 [412 kB] Get:60 http://ftpmaster.internal/ubuntu groovy/main ppc64el fonts-dejavu-core all 2.37-1 [1041 kB] Get:61 http://ftpmaster.internal/ubuntu groovy/main ppc64el fontconfig-config all 2.13.1-2ubuntu3 [28.8 kB] Get:62 http://ftpmaster.internal/ubuntu groovy/main ppc64el libfontconfig1 ppc64el 2.13.1-2ubuntu3 [151 kB] Get:63 http://ftpmaster.internal/ubuntu groovy/main ppc64el libpixman-1-0 ppc64el 0.38.4-0ubuntu1 [267 kB] Get:64 http://ftpmaster.internal/ubuntu groovy/main ppc64el libxcb-render0 ppc64el 1.14-2 [15.7 kB] Get:65 http://ftpmaster.internal/ubuntu groovy/main ppc64el libxcb-shm0 ppc64el 1.14-2 [5892 B] Get:66 http://ftpmaster.internal/ubuntu groovy/main ppc64el libxrender1 ppc64el 1:0.9.10-1 [17.6 kB] Get:67 http://ftpmaster.internal/ubuntu groovy/main ppc64el libcairo2 ppc64el 1.16.0-4ubuntu1 [692 kB] Get:68 http://ftpmaster.internal/ubuntu groovy-proposed/main ppc64el libbrotli1 ppc64el 1.0.7-6.1 [293 kB] Get:69 http://ftpmaster.internal/ubuntu groovy/main ppc64el libroken18-heimdal ppc64el 7.7.0+dfsg-1ubuntu1 [46.5 kB] Get:70 http://ftpmaster.internal/ubuntu groovy/main ppc64el libasn1-8-heimdal ppc64el 7.7.0+dfsg-1ubuntu1 [176 kB] Get:71 http://ftpmaster.internal/ubuntu groovy/main ppc64el libheimbase1-heimdal ppc64el 7.7.0+dfsg-1ubuntu1 [32.5 kB] Get:72 http://ftpmaster.internal/ubuntu groovy/main ppc64el libhcrypto4-heimdal ppc64el 7.7.0+dfsg-1ubuntu1 [108 kB] Get:73 http://ftpmaster.internal/ubuntu groovy/main ppc64el libwind0-heimdal ppc64el 7.7.0+dfsg-1ubuntu1 [48.7 kB] Get:74 http://ftpmaster.internal/ubuntu groovy/main ppc64el libhx509-5-heimdal ppc64el 7.7.0+dfsg-1ubuntu1 [120 kB] Get:75 http://ftpmaster.internal/ubuntu groovy/main ppc64el libkrb5-26-heimdal ppc64el 7.7.0+dfsg-1ubuntu1 [234 kB] Get:76 http://ftpmaster.internal/ubuntu groovy/main ppc64el libheimntlm0-heimdal ppc64el 7.7.0+dfsg-1ubuntu1 [17.4 kB] Get:77 http://ftpmaster.internal/ubuntu groovy/main ppc64el libgssapi3-heimdal ppc64el 7.7.0+dfsg-1ubuntu1 [105 kB] Get:78 http://ftpmaster.internal/ubuntu groovy/main ppc64el libsasl2-modules-db ppc64el 2.1.27+dfsg-2 [16.9 kB] Get:79 http://ftpmaster.internal/ubuntu groovy/main ppc64el libsasl2-2 ppc64el 2.1.27+dfsg-2 [60.2 kB] Get:80 http://ftpmaster.internal/ubuntu groovy/main ppc64el libldap-common all 2.4.49+dfsg-2ubuntu1 [17.3 kB] Get:81 http://ftpmaster.internal/ubuntu groovy/main ppc64el libldap-2.4-2 ppc64el 2.4.49+dfsg-2ubuntu1 [176 kB] Get:82 http://ftpmaster.internal/ubuntu groovy/main ppc64el libnghttp2-14 ppc64el 1.40.0-1build1 [91.3 kB] Get:83 http://ftpmaster.internal/ubuntu groovy/main ppc64el librtmp1 ppc64el 2.4+20151223.gitfa8646d.1-2build1 [59.3 kB] Get:84 http://ftpmaster.internal/ubuntu groovy/main ppc64el libssh-4 ppc64el 0.9.3-2ubuntu2 [195 kB] Get:85 http://ftpmaster.internal/ubuntu groovy/main ppc64el libcurl4 ppc64el 7.68.0-1ubuntu2 [255 kB] Get:86 http://ftpmaster.internal/ubuntu groovy/main ppc64el libjpeg-turbo8 ppc64el 2.0.3-0ubuntu1 [155 kB] Get:87 http://ftpmaster.internal/ubuntu groovy/main ppc64el libjpeg8 ppc64el 8c-2ubuntu8 [2146 B] Get:88 http://ftpmaster.internal/ubuntu groovy/main ppc64el libgfortran5 ppc64el 10-20200425-1ubuntu2 [688 kB] Get:89 http://ftpmaster.internal/ubuntu groovy-proposed/main ppc64el liblapack3 ppc64el 3.9.0-2 [2115 kB] Get:90 http://ftpmaster.internal/ubuntu groovy/main ppc64el fontconfig ppc64el 2.13.1-2ubuntu3 [172 kB] Get:91 http://ftpmaster.internal/ubuntu groovy-proposed/main ppc64el libgraphite2-3 ppc64el 1.3.14-1 [73.3 kB] Get:92 http://ftpmaster.internal/ubuntu groovy/main ppc64el libharfbuzz0b ppc64el 2.6.4-1ubuntu4 [432 kB] Get:93 http://ftpmaster.internal/ubuntu groovy/main ppc64el libthai-data all 0.1.28-3 [134 kB] Get:94 http://ftpmaster.internal/ubuntu groovy/main ppc64el libdatrie1 ppc64el 0.2.12-3 [20.4 kB] Get:95 http://ftpmaster.internal/ubuntu groovy/main ppc64el libthai0 ppc64el 0.1.28-3 [19.4 kB] Get:96 http://ftpmaster.internal/ubuntu groovy/main ppc64el libpango-1.0-0 ppc64el 1.44.7-2ubuntu4 [178 kB] Get:97 http://ftpmaster.internal/ubuntu groovy/main ppc64el libpangoft2-1.0-0 ppc64el 1.44.7-2ubuntu4 [39.1 kB] Get:98 http://ftpmaster.internal/ubuntu groovy/main ppc64el libpangocairo-1.0-0 ppc64el 1.44.7-2ubuntu4 [26.9 kB] Get:99 http://ftpmaster.internal/ubuntu groovy/main ppc64el libtcl8.6 ppc64el 8.6.10+dfsg-1 [1008 kB] Get:100 http://ftpmaster.internal/ubuntu groovy/main ppc64el libjbig0 ppc64el 2.1-3.1build1 [26.9 kB] Get:101 http://ftpmaster.internal/ubuntu groovy/main ppc64el libwebp6 ppc64el 0.6.1-2 [225 kB] Get:102 http://ftpmaster.internal/ubuntu groovy/main ppc64el libtiff5 ppc64el 4.1.0+git191117-2build1 [192 kB] Get:103 http://ftpmaster.internal/ubuntu groovy/main ppc64el libxft2 ppc64el 2.3.3-0ubuntu1 [46.7 kB] Get:104 http://ftpmaster.internal/ubuntu groovy/main ppc64el x11-common all 1:7.7+19ubuntu14 [22.3 kB] Get:105 http://ftpmaster.internal/ubuntu groovy/main ppc64el libxss1 ppc64el 1:1.2.3-1 [8964 B] Get:106 http://ftpmaster.internal/ubuntu groovy/main ppc64el libtk8.6 ppc64el 8.6.10-1 [790 kB] Get:107 http://ftpmaster.internal/ubuntu groovy/main ppc64el libice6 ppc64el 2:1.0.10-0ubuntu1 [46.1 kB] Get:108 http://ftpmaster.internal/ubuntu groovy/main ppc64el libsm6 ppc64el 2:1.2.3-1 [17.6 kB] Get:109 http://ftpmaster.internal/ubuntu groovy/main ppc64el libxt6 ppc64el 1:1.1.5-1 [152 kB] Get:110 http://ftpmaster.internal/ubuntu groovy/universe ppc64el r-base-core ppc64el 3.6.3-2 [24.6 MB] Get:111 http://ftpmaster.internal/ubuntu groovy-proposed/main ppc64el libgfortran-9-dev ppc64el 9.3.0-11ubuntu2 [462 kB] Get:112 http://ftpmaster.internal/ubuntu groovy-proposed/main ppc64el gfortran-9 ppc64el 9.3.0-11ubuntu2 [7277 kB] Get:113 http://ftpmaster.internal/ubuntu groovy/main ppc64el gfortran ppc64el 4:9.3.0-1ubuntu2 [1372 B] Get:114 http://ftpmaster.internal/ubuntu groovy-proposed/main ppc64el libblas-dev ppc64el 3.9.0-2 [224 kB] Get:115 http://ftpmaster.internal/ubuntu groovy-proposed/main ppc64el liblapack-dev ppc64el 3.9.0-2 [4434 kB] Get:116 http://ftpmaster.internal/ubuntu groovy/main ppc64el libncurses-dev ppc64el 6.2-1 [412 kB] Get:117 http://ftpmaster.internal/ubuntu groovy/main ppc64el libncurses5-dev ppc64el 6.2-1 [976 B] Get:118 http://ftpmaster.internal/ubuntu groovy/main ppc64el libreadline-dev ppc64el 8.0-4 [179 kB] Get:119 http://ftpmaster.internal/ubuntu groovy/main ppc64el libjpeg-turbo8-dev ppc64el 2.0.3-0ubuntu1 [276 kB] Get:120 http://ftpmaster.internal/ubuntu groovy/main ppc64el libjpeg8-dev ppc64el 8c-2ubuntu8 [1606 B] Get:121 http://ftpmaster.internal/ubuntu groovy/main ppc64el libjpeg-dev ppc64el 8c-2ubuntu8 [1602 B] Get:122 http://ftpmaster.internal/ubuntu groovy/main ppc64el libpcre2-16-0 ppc64el 10.34-7 [188 kB] Get:123 http://ftpmaster.internal/ubuntu groovy/main ppc64el libpcre2-32-0 ppc64el 10.34-7 [177 kB] Get:124 http://ftpmaster.internal/ubuntu groovy/main ppc64el libpcre2-posix2 ppc64el 10.34-7 [6212 B] Get:125 http://ftpmaster.internal/ubuntu groovy/main ppc64el libpcre2-dev ppc64el 10.34-7 [669 kB] Get:126 http://ftpmaster.internal/ubuntu groovy/main ppc64el libpcre16-3 ppc64el 2:8.39-12build1 [159 kB] Get:127 http://ftpmaster.internal/ubuntu groovy/main ppc64el libpcre32-3 ppc64el 2:8.39-12build1 [150 kB] Get:128 http://ftpmaster.internal/ubuntu groovy/main ppc64el libpcrecpp0v5 ppc64el 2:8.39-12build1 [16.6 kB] Get:129 http://ftpmaster.internal/ubuntu groovy/main ppc64el libpcre3-dev ppc64el 2:8.39-12build1 [552 kB] Get:130 http://ftpmaster.internal/ubuntu groovy/main ppc64el zlib1g-dev ppc64el 1:1.2.11.dfsg-2ubuntu1 [165 kB] Get:131 http://ftpmaster.internal/ubuntu groovy/main ppc64el libpng-dev ppc64el 1.6.37-2 [218 kB] Get:132 http://ftpmaster.internal/ubuntu groovy/main ppc64el libbz2-dev ppc64el 1.0.8-2 [43.2 kB] Get:133 http://ftpmaster.internal/ubuntu groovy/main ppc64el liblzma-dev ppc64el 5.2.4-1 [166 kB] Get:134 http://ftpmaster.internal/ubuntu groovy/main ppc64el icu-devtools ppc64el 66.1-2ubuntu2 [194 kB] Get:135 http://ftpmaster.internal/ubuntu groovy/main ppc64el libicu-dev ppc64el 66.1-2ubuntu2 [9572 kB] Get:136 http://ftpmaster.internal/ubuntu groovy-proposed/main ppc64el pkg-config ppc64el 0.29.2-1ubuntu1 [49.5 kB] Get:137 http://ftpmaster.internal/ubuntu groovy/universe ppc64el r-base-dev all 3.6.3-2 [4524 B] Get:138 http://ftpmaster.internal/ubuntu groovy/main ppc64el libfile-which-perl all 1.23-1 [13.8 kB] Get:139 http://ftpmaster.internal/ubuntu groovy/universe ppc64el libswitch-perl all 2.17-2 [18.8 kB] Get:140 http://ftpmaster.internal/ubuntu groovy/universe ppc64el dh-r all 20200314 [35.5 kB] Get:141 http://ftpmaster.internal/ubuntu groovy/main ppc64el libboost1.71-dev ppc64el 1.71.0-6ubuntu6 [9068 kB] Get:142 http://ftpmaster.internal/ubuntu groovy/main ppc64el libboost-dev ppc64el 1.71.0.0ubuntu2 [3600 B] Get:143 http://ftpmaster.internal/ubuntu groovy/universe ppc64el r-bioc-biocgenerics all 0.32.0-1 [639 kB] Get:144 http://ftpmaster.internal/ubuntu groovy/universe ppc64el r-cran-formatr all 1.7-1 [147 kB] Get:145 http://ftpmaster.internal/ubuntu groovy/universe ppc64el r-cran-lambda.r all 1.2.4-1 [119 kB] Get:146 http://ftpmaster.internal/ubuntu groovy/universe ppc64el r-cran-futile.options all 1.0.1-2 [19.8 kB] Get:147 http://ftpmaster.internal/ubuntu groovy/universe ppc64el r-cran-futile.logger all 1.4.3-3 [102 kB] Get:148 http://ftpmaster.internal/ubuntu groovy/universe ppc64el r-cran-snow all 1:0.4.3-1 [107 kB] Get:149 http://ftpmaster.internal/ubuntu groovy/universe ppc64el r-cran-bh all 1.66.0-1 [5116 B] Get:150 http://ftpmaster.internal/ubuntu groovy/universe ppc64el r-bioc-biocparallel ppc64el 1.20.1-1build1 [1074 kB] Get:151 http://ftpmaster.internal/ubuntu groovy-proposed/universe ppc64el r-bioc-s4vectors ppc64el 0.24.4-1 [1954 kB] Get:152 http://ftpmaster.internal/ubuntu groovy/universe ppc64el r-bioc-iranges ppc64el 2.20.2-1 [2211 kB] Get:153 http://ftpmaster.internal/ubuntu groovy/universe ppc64el r-cran-lattice ppc64el 0.20-40-1 [1124 kB] Get:154 http://ftpmaster.internal/ubuntu groovy/universe ppc64el r-cran-matrix ppc64el 1.2-18-1 [3507 kB] Get:155 http://ftpmaster.internal/ubuntu groovy-proposed/universe ppc64el r-cran-matrixstats ppc64el 0.56.0-1 [799 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 103 MB in 2s (64.9 MB/s) Selecting previously unselected package libbsd0:ppc64el. (Reading database ... 12761 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.10.0-1_ppc64el.deb ... Unpacking libbsd0:ppc64el (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2ubuntu3_ppc64el.deb ... Unpacking bsdmainutils (11.1.2ubuntu3) ... Selecting previously unselected package libuchardet0:ppc64el. Preparing to unpack .../002-libuchardet0_0.0.6-3build1_ppc64el.deb ... Unpacking libuchardet0:ppc64el (0.0.6-3build1) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-4build1_ppc64el.deb ... Unpacking groff-base (1.22.4-4build1) ... Selecting previously unselected package libpipeline1:ppc64el. Preparing to unpack .../004-libpipeline1_1.5.2-2build1_ppc64el.deb ... Unpacking libpipeline1:ppc64el (1.5.2-2build1) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.9.1-1_ppc64el.deb ... 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Selecting previously unselected package libpango-1.0-0:ppc64el. Preparing to unpack .../094-libpango-1.0-0_1.44.7-2ubuntu4_ppc64el.deb ... Unpacking libpango-1.0-0:ppc64el (1.44.7-2ubuntu4) ... Selecting previously unselected package libpangoft2-1.0-0:ppc64el. Preparing to unpack .../095-libpangoft2-1.0-0_1.44.7-2ubuntu4_ppc64el.deb ... Unpacking libpangoft2-1.0-0:ppc64el (1.44.7-2ubuntu4) ... Selecting previously unselected package libpangocairo-1.0-0:ppc64el. Preparing to unpack .../096-libpangocairo-1.0-0_1.44.7-2ubuntu4_ppc64el.deb ... Unpacking libpangocairo-1.0-0:ppc64el (1.44.7-2ubuntu4) ... Selecting previously unselected package libtcl8.6:ppc64el. Preparing to unpack .../097-libtcl8.6_8.6.10+dfsg-1_ppc64el.deb ... Unpacking libtcl8.6:ppc64el (8.6.10+dfsg-1) ... Selecting previously unselected package libjbig0:ppc64el. Preparing to unpack .../098-libjbig0_2.1-3.1build1_ppc64el.deb ... Unpacking libjbig0:ppc64el (2.1-3.1build1) ... 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Setting up unzip (6.0-25ubuntu1) ... Setting up libdebhelper-perl (13ubuntu1) ... Setting up libbrotli1:ppc64el (1.0.7-6.1) ... Setting up libboost1.71-dev:ppc64el (1.71.0-6ubuntu6) ... Setting up x11-common (1:7.7+19ubuntu14) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libnghttp2-14:ppc64el (1.40.0-1build1) ... Setting up libmagic1:ppc64el (1:5.38-4) ... Setting up gettext-base (0.19.8.1-10build1) ... Setting up file (1:5.38-4) ... Setting up libreadline-dev:ppc64el (8.0-4) ... Setting up libldap-common (2.4.49+dfsg-2ubuntu1) ... Setting up libjbig0:ppc64el (2.1-3.1build1) ... Setting up libpcre2-16-0:ppc64el (10.34-7) ... Setting up libkrb5support0:ppc64el (1.17-6ubuntu4) ... Setting up libsasl2-modules-db:ppc64el (2.1.27+dfsg-2) ... Setting up zip (3.0-11build1) ... Setting up autotools-dev (20180224.1) ... Setting up libpcre2-32-0:ppc64el (10.34-7) ... Setting up libblas3:ppc64el (3.9.0-2) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode Setting up libswitch-perl (2.17-2) ... Setting up libfreetype6:ppc64el (2.10.1-2) ... Setting up libx11-data (2:1.6.9-2ubuntu1) ... Setting up librtmp1:ppc64el (2.4+20151223.gitfa8646d.1-2build1) ... Setting up libsigsegv2:ppc64el (2.12-2) ... Setting up libfribidi0:ppc64el (1.0.8-2) ... Setting up libpcre32-3:ppc64el (2:8.39-12build1) ... Setting up libtcl8.6:ppc64el (8.6.10+dfsg-1) ... Setting up autopoint (0.19.8.1-10build1) ... Setting up libwebp6:ppc64el (0.6.1-2) ... Setting up icu-devtools (66.1-2ubuntu2) ... Setting up pkg-config (0.29.2-1ubuntu1) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up ucf (3.0038+nmu1) ... Setting up libpcre2-posix2:ppc64el (10.34-7) ... Setting up libk5crypto3:ppc64el (1.17-6ubuntu4) ... Setting up libjpeg-turbo8:ppc64el (2.0.3-0ubuntu1) ... Setting up libsasl2-2:ppc64el (2.1.27+dfsg-2) ... Setting up libgfortran5:ppc64el (10-20200425-1ubuntu2) ... Setting up libroken18-heimdal:ppc64el (7.7.0+dfsg-1ubuntu1) ... Setting up liblzma-dev:ppc64el (5.2.4-1) ... Setting up zlib1g-dev:ppc64el (1:1.2.11.dfsg-2ubuntu1) ... Setting up libuchardet0:ppc64el (0.0.6-3build1) ... Setting up libncurses5-dev:ppc64el (6.2-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libharfbuzz0b:ppc64el (2.6.4-1ubuntu4) ... Setting up libthai-data (0.1.28-3) ... Setting up libkrb5-3:ppc64el (1.17-6ubuntu4) ... Setting up libboost-dev:ppc64el (1.71.0.0ubuntu2) ... Setting up libbsd0:ppc64el (0.10.0-1) ... Setting up libelf1:ppc64el (0.176-1.1build1) ... Setting up libicu-dev:ppc64el (66.1-2ubuntu2) ... Setting up libxml2:ppc64el (2.9.10+dfsg-5) ... Setting up xdg-utils (1.1.3-2ubuntu1) ... Setting up libblas-dev:ppc64el (3.9.0-2) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so to provide /usr/lib/powerpc64le-linux-gnu/libblas.so (libblas.so-powerpc64le-linux-gnu) in auto mode Setting up dctrl-tools (2.24-3) ... Setting up libheimbase1-heimdal:ppc64el (7.7.0+dfsg-1ubuntu1) ... Setting up libbz2-dev:ppc64el (1.0.8-2) ... Setting up libjpeg8:ppc64el (8c-2ubuntu8) ... Setting up libfile-stripnondeterminism-perl (1.8.0-1) ... Setting up r-cran-bh (1.66.0-1) ... Setting up libpaper1:ppc64el (1.1.28) ... Creating config file /etc/papersize with new version Setting up libice6:ppc64el (2:1.0.10-0ubuntu1) ... Setting up libjpeg-turbo8-dev:ppc64el (2.0.3-0ubuntu1) ... Setting up libxdmcp6:ppc64el (1:1.1.3-0ubuntu1) ... Setting up liblapack3:ppc64el (3.9.0-2) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode Setting up libxcb1:ppc64el (1.14-2) ... Setting up libpcre2-dev:ppc64el (10.34-7) ... Setting up libtool (2.4.6-14) ... Setting up libxcb-render0:ppc64el (1.14-2) ... Setting up libpcre3-dev:ppc64el (2:8.39-12build1) ... Setting up fontconfig-config (2.13.1-2ubuntu3) ... Setting up libasn1-8-heimdal:ppc64el (7.7.0+dfsg-1ubuntu1) ... Setting up libpng-dev:ppc64el (1.6.37-2) ... Setting up libgfortran-9-dev:ppc64el (9.3.0-11ubuntu2) ... Setting up m4 (1.4.18-4) ... Setting up libxcb-shm0:ppc64el (1.14-2) ... Setting up libpaper-utils (1.1.28) ... Setting up libhcrypto4-heimdal:ppc64el (7.7.0+dfsg-1ubuntu1) ... Setting up libthai0:ppc64el (0.1.28-3) ... Setting up libwind0-heimdal:ppc64el (7.7.0+dfsg-1ubuntu1) ... Setting up bsdmainutils (11.1.2ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up liblapack-dev:ppc64el (3.9.0-2) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so (liblapack.so-powerpc64le-linux-gnu) in auto mode Setting up libgssapi-krb5-2:ppc64el (1.17-6ubuntu4) ... Setting up libcroco3:ppc64el (0.6.13-1) ... Setting up libssh-4:ppc64el (0.9.3-2ubuntu2) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.8.0-1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4build1) ... Setting up libx11-6:ppc64el (2:1.6.9-2ubuntu1) ... Setting up libtiff5:ppc64el (4.1.0+git191117-2build1) ... Setting up libfontconfig1:ppc64el (2.13.1-2ubuntu3) ... Setting up libjpeg8-dev:ppc64el (8c-2ubuntu8) ... Setting up libsm6:ppc64el (2:1.2.3-1) ... Setting up libxmuu1:ppc64el (2:1.1.3-0ubuntu1) ... Setting up automake (1:1.16.1-4ubuntu6) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up fontconfig (2.13.1-2ubuntu3) ... Regenerating fonts cache... done. Setting up gettext (0.19.8.1-10build1) ... Setting up libxrender1:ppc64el (1:0.9.10-1) ... Setting up gfortran-9 (9.3.0-11ubuntu2) ... Setting up libhx509-5-heimdal:ppc64el (7.7.0+dfsg-1ubuntu1) ... Setting up libpango-1.0-0:ppc64el (1.44.7-2ubuntu4) ... Setting up libjpeg-dev:ppc64el (8c-2ubuntu8) ... Setting up libxext6:ppc64el (2:1.3.4-0ubuntu1) ... Setting up man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up gfortran (4:9.3.0-1ubuntu2) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:ppc64el (1.16.0-4ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxt6:ppc64el (1:1.1.5-1) ... Setting up xauth (1:1.1-0ubuntu1) ... Setting up libxss1:ppc64el (1:1.2.3-1) ... Setting up libpangoft2-1.0-0:ppc64el (1.44.7-2ubuntu4) ... Setting up libpangocairo-1.0-0:ppc64el (1.44.7-2ubuntu4) ... Setting up libkrb5-26-heimdal:ppc64el (7.7.0+dfsg-1ubuntu1) ... Setting up libxft2:ppc64el (2.3.3-0ubuntu1) ... Setting up po-debconf (1.0.21) ... Setting up libtk8.6:ppc64el (8.6.10-1) ... Setting up libheimntlm0-heimdal:ppc64el (7.7.0+dfsg-1ubuntu1) ... Setting up libgssapi3-heimdal:ppc64el (7.7.0+dfsg-1ubuntu1) ... Setting up libldap-2.4-2:ppc64el (2.4.49+dfsg-2ubuntu1) ... Setting up libcurl4:ppc64el (7.68.0-1ubuntu2) ... Setting up r-base-core (3.6.3-2) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-futile.options (1.0.1-2) ... Setting up r-cran-lattice (0.20-40-1) ... Setting up r-cran-formatr (1.7-1) ... Setting up r-bioc-biocgenerics (0.32.0-1) ... Setting up r-cran-matrixstats (0.56.0-1) ... Setting up r-base-dev (3.6.3-2) ... Setting up r-cran-lambda.r (1.2.4-1) ... Setting up r-cran-snow (1:0.4.3-1) ... Setting up r-bioc-s4vectors (0.24.4-1) ... Setting up r-cran-futile.logger (1.4.3-3) ... Setting up r-cran-matrix (1.2-18-1) ... Setting up r-bioc-iranges (2.20.2-1) ... Setting up r-bioc-biocparallel (1.20.1-1build1) ... Setting up dh-autoreconf (19) ... Setting up debhelper (13ubuntu1) ... Setting up dh-r (20200314) ... Setting up sbuild-build-depends-r-bioc-delayedarray-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.31-0ubuntu9) ... Processing triggers for systemd (245.4-4ubuntu3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-177-generic ppc64el (ppc64le) Toolchain package versions: binutils_2.34-6ubuntu1 dpkg-dev_1.19.7ubuntu3 g++-9_9.3.0-11ubuntu2 gcc-9_9.3.0-11ubuntu2 libc6-dev_2.31-0ubuntu9 libstdc++-9-dev_9.3.0-11ubuntu2 libstdc++6_10-20200425-1ubuntu2 linux-libc-dev_5.4.0-26.30 Package versions: adduser_3.118ubuntu2 advancecomp_2.1-2.1build1 apt_2.0.2 autoconf_2.69-11.1 automake_1:1.16.1-4ubuntu6 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu6 base-passwd_3.5.47 bash_5.0-6ubuntu1 binutils_2.34-6ubuntu1 binutils-common_2.34-6ubuntu1 binutils-powerpc64le-linux-gnu_2.34-6ubuntu1 bsdmainutils_11.1.2ubuntu3 bsdutils_1:2.34-0.1ubuntu9 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110ubuntu1 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libxdmcp6_1:1.1.3-0ubuntu1 libxext6_2:1.3.4-0ubuntu1 libxft2_2.3.3-0ubuntu1 libxml2_2.9.10+dfsg-5 libxmuu1_2:1.1.3-0ubuntu1 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.1.5-1 libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.4.0-26.30 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu5 logsave_1.45.5-2ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.2.1-1.3 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mount_2.34-0.1ubuntu9 ncurses-base_6.2-1 ncurses-bin_6.2-1 openssl_1.1.1f-1ubuntu2 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu5 patch_2.7.6-6 perl_5.30.0-10 perl-base_5.30.0-10 perl-modules-5.30_5.30.0-10 pinentry-curses_1.1.0-3build1 pkg-config_0.29.2-1ubuntu1 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-1ubuntu2 r-base-core_3.6.3-2 r-base-dev_3.6.3-2 r-bioc-biocgenerics_0.32.0-1 r-bioc-biocparallel_1.20.1-1build1 r-bioc-iranges_2.20.2-1 r-bioc-s4vectors_0.24.4-1 r-cran-bh_1.66.0-1 r-cran-formatr_1.7-1 r-cran-futile.logger_1.4.3-3 r-cran-futile.options_1.0.1-2 r-cran-lambda.r_1.2.4-1 r-cran-lattice_0.20-40-1 r-cran-matrix_1.2-18-1 r-cran-matrixstats_0.56.0-1 r-cran-snow_1:0.4.3-1 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-delayedarray-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 systemd_245.4-4ubuntu3 systemd-sysv_245.4-4ubuntu3 systemd-timesyncd_245.4-4ubuntu3 sysvinit-utils_2.96-2.1ubuntu1 tar_1.30+dfsg-7 tzdata_2019c-3ubuntu1 ubuntu-keyring_2020.02.11.2 ucf_3.0038+nmu1 unzip_6.0-25ubuntu1 util-linux_2.34-0.1ubuntu9 x11-common_1:7.7+19ubuntu14 xauth_1:1.1-0ubuntu1 xdg-utils_1.1.3-2ubuntu1 xz-utils_5.2.4-1 zip_3.0-11build1 zlib1g_1:1.2.11.dfsg-2ubuntu1 zlib1g-dev_1:1.2.11.dfsg-2ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue Apr 14 12:19:17 2020 UTC gpgv: using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-bioc-delayedarray_0.12.3+dfsg-1.dsc dpkg-source: info: extracting r-bioc-delayedarray in r-bioc-delayedarray-0.12.3+dfsg dpkg-source: info: unpacking r-bioc-delayedarray_0.12.3+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-delayedarray_0.12.3+dfsg-1.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-19212265 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-19212265 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-19212265 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package r-bioc-delayedarray dpkg-buildpackage: info: source version 0.12.3+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary-arch dh binary-arch --buildsystem R dh_update_autotools_config -a -O--buildsystem=R dh_autoreconf -a -O--buildsystem=R dh_auto_configure -a -O--buildsystem=R dh_auto_build -a -O--buildsystem=R dh_auto_test -a -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=R dh_prep -a -O--buildsystem=R dh_auto_install -a -O--buildsystem=R I: R packages needed for DEP8: runit, biocgenerics, genefilter I: R Package: DelayedArray Version: 0.12.3 I: Building using R version 3.6.3-2 I: R API version: r-api-3.5 I: Using built-time from d/changelog: Tue, 14 Apr 2020 14:10:05 +0200 mkdir -p /<>/r-bioc-delayedarray-0.12.3\+dfsg/debian/r-bioc-delayedarray/usr/lib/R/site-library R CMD INSTALL -l /<>/r-bioc-delayedarray-0.12.3\+dfsg/debian/r-bioc-delayedarray/usr/lib/R/site-library --clean . "--built-timestamp='Tue, 14 Apr 2020 14:10:05 +0200'" * installing *source* package ‘DelayedArray’ ... ** using staged installation ** libs make[1]: Entering directory '/<>/r-bioc-delayedarray-0.12.3+dfsg/src' gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fPIC -g -O3 -fdebug-prefix-map=/build/r-base-dF7jfw/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_DelayedArray.c -o R_init_DelayedArray.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fPIC -g -O3 -fdebug-prefix-map=/build/r-base-dF7jfw/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c S4Vectors_stubs.c -o S4Vectors_stubs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fPIC -g -O3 -fdebug-prefix-map=/build/r-base-dF7jfw/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c abind.c -o abind.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fPIC -g -O3 -fdebug-prefix-map=/build/r-base-dF7jfw/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c array_selection.c -o array_selection.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fPIC -g -O3 -fdebug-prefix-map=/build/r-base-dF7jfw/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c compress_atomic_vector.c -o compress_atomic_vector.o gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o DelayedArray.so R_init_DelayedArray.o S4Vectors_stubs.o abind.o array_selection.o compress_atomic_vector.o -L/usr/lib/R/lib -lR make[1]: Leaving directory '/<>/r-bioc-delayedarray-0.12.3+dfsg/src' make[1]: Entering directory '/<>/r-bioc-delayedarray-0.12.3+dfsg/src' make[1]: Leaving directory '/<>/r-bioc-delayedarray-0.12.3+dfsg/src' installing to /<>/r-bioc-delayedarray-0.12.3+dfsg/debian/r-bioc-delayedarray/usr/lib/R/site-library/00LOCK-r-bioc-delayedarray-0.12.3+dfsg/00new/DelayedArray/libs ** R ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘aperm’ in package ‘DelayedArray’ Creating a generic function for ‘sweep’ from package ‘base’ in package ‘DelayedArray’ Creating a new generic function for ‘apply’ in package ‘DelayedArray’ Creating a new generic function for ‘rowsum’ in package ‘DelayedArray’ Creating a generic function for ‘dnorm’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘pnorm’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘qnorm’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘dbinom’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘pbinom’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘qbinom’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘dpois’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘ppois’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘qpois’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘dlogis’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘plogis’ from package ‘stats’ in package ‘DelayedArray’ Creating a generic function for ‘qlogis’ from package ‘stats’ in package ‘DelayedArray’ Creating a new generic function for ‘rowMaxs’ in package ‘DelayedArray’ Creating a new generic function for ‘colMaxs’ in package ‘DelayedArray’ Creating a new generic function for ‘rowMins’ in package ‘DelayedArray’ Creating a new generic function for ‘colMins’ in package ‘DelayedArray’ Creating a new generic function for ‘rowRanges’ in package ‘DelayedArray’ Creating a new generic function for ‘colRanges’ in package ‘DelayedArray’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DelayedArray) W: Ignoring specified R dependency: R (>= 3.4) I: Using r-cran-matrixstats for Depends:matrixStats I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.31.5) I: Using r-bioc-s4vectors for Depends:S4Vectors (>= 0.24.4) I: Using r-bioc-iranges for Depends:IRanges (>= 2.17.3) I: Using r-bioc-biocparallel for Depends:BiocParallel I: Using r-cran-runit for Recommends:runit I: Using r-bioc-biocgenerics for Recommends:biocgenerics I: Using r-bioc-genefilter for Recommends:genefilter W: Cannot find a debian package for Suggests:HDF5Array I: Using r-bioc-summarizedexperiment for Suggests:SummarizedExperiment W: Cannot find a debian package for Suggests:airway W: Cannot find a debian package for Suggests:pryr W: Cannot find a debian package for Suggests:DelayedMatrixStats I: Using r-cran-knitr for Suggests:knitr W: Cannot find a debian package for Suggests:BiocStyle I: Using r-cran-matrix for Imports:Matrix I: Using r-bioc-s4vectors for LinkingTo:S4Vectors I: BioConductor API version: r-api-bioc-3.10 dh_installdocs -a -O--buildsystem=R dh_installchangelogs -a -O--buildsystem=R dh_installinit -a -O--buildsystem=R dh_installsystemduser -a -O--buildsystem=R dh_perl -a -O--buildsystem=R dh_link -a -O--buildsystem=R dh_strip_nondeterminism -a -O--buildsystem=R dh_compress -a -O--buildsystem=R dh_fixperms -a -O--buildsystem=R dh_missing -a -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -a -O--buildsystem=R dh_gencontrol -a -O--buildsystem=R dh_md5sums -a -O--buildsystem=R dh_builddeb -a -O--buildsystem=R INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing r-bioc-delayedarray (in debian/r-bioc-delayedarray); do_strip: , oemstrip: pkgstriptranslations: processing r-bioc-delayedarray-dbgsym (in debian/.debhelper/r-bioc-delayedarray/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-bioc-delayedarray/DEBIAN/control, package r-bioc-delayedarray, directory debian/r-bioc-delayedarray pkgstripfiles: Truncating usr/share/doc/r-bioc-delayedarray/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-bioc-delayedarray ... pkgstripfiles: No PNG files. pkgstripfiles: processing control file: debian/.debhelper/r-bioc-delayedarray/dbgsym-root/DEBIAN/control, package r-bioc-delayedarray-dbgsym, directory debian/.debhelper/r-bioc-delayedarray/dbgsym-root dpkg-deb: building package 'r-bioc-delayedarray' in '../r-bioc-delayedarray_0.12.3+dfsg-1_ppc64el.deb'. dpkg-deb: building package 'r-bioc-delayedarray-dbgsym' in 'debian/.debhelper/scratch-space/build-r-bioc-delayedarray/r-bioc-delayedarray-dbgsym_0.12.3+dfsg-1_ppc64el.deb'. Renaming r-bioc-delayedarray-dbgsym_0.12.3+dfsg-1_ppc64el.deb to r-bioc-delayedarray-dbgsym_0.12.3+dfsg-1_ppc64el.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../r-bioc-delayedarray_0.12.3+dfsg-1_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20200428-0404 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-bioc-delayedarray_0.12.3+dfsg-1_ppc64el.changes: -------------------------------------------------- Format: 1.8 Date: Tue, 14 Apr 2020 14:10:05 +0200 Source: r-bioc-delayedarray Binary: r-bioc-delayedarray Architecture: ppc64el Version: 0.12.3+dfsg-1 Distribution: groovy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Dylan Aïssi Description: r-bioc-delayedarray - BioConductor delayed operations on array-like objects Changes: r-bioc-delayedarray (0.12.3+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Testsuite: autopkgtest-pkg-r (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) Checksums-Sha1: 5cc504d0e57844919221a75e820ea008aca59bd3 37112 r-bioc-delayedarray-dbgsym_0.12.3+dfsg-1_ppc64el.ddeb 367b741e3fa1c575523cf7437458120e78bb5849 9684 r-bioc-delayedarray_0.12.3+dfsg-1_ppc64el.buildinfo 2fead0abce2dcf232c6f551106e4c43ad361109e 1675132 r-bioc-delayedarray_0.12.3+dfsg-1_ppc64el.deb Checksums-Sha256: 3f2d59d427db227c7687fea55d3b9b353ed1664f88197fe654a573d6ec6d821f 37112 r-bioc-delayedarray-dbgsym_0.12.3+dfsg-1_ppc64el.ddeb 0eda10546dddf06bae38b7d058ed6e5a518f275c9e39d4bb71db937ebfa3da5d 9684 r-bioc-delayedarray_0.12.3+dfsg-1_ppc64el.buildinfo 34ccfdc9662de74edc7dd4df645f48ccbc4a161ed11d861c31a034a633c44e69 1675132 r-bioc-delayedarray_0.12.3+dfsg-1_ppc64el.deb Files: 14e695b0ab934c60a89642ea1ddee9ab 37112 debug optional r-bioc-delayedarray-dbgsym_0.12.3+dfsg-1_ppc64el.ddeb 572c90c98b89f519620e2624efbd8240 9684 gnu-r optional r-bioc-delayedarray_0.12.3+dfsg-1_ppc64el.buildinfo d7b8ecf3583f9b7d802383c51deaedb6 1675132 gnu-r optional r-bioc-delayedarray_0.12.3+dfsg-1_ppc64el.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-bioc-delayedarray_0.12.3+dfsg-1_ppc64el.deb --------------------------------------------- new debian package, version 2.0. size 1675132 bytes: control archive=2136 bytes. 1231 bytes, 21 lines control 3791 bytes, 41 lines md5sums Package: r-bioc-delayedarray Version: 0.12.3+dfsg-1 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian R Packages Maintainers Installed-Size: 2691 Depends: r-base-core (>= 3.6.3-2), r-api-3.5, r-api-bioc-3.10, r-cran-matrixstats, r-bioc-biocgenerics (>= 0.31.5), r-bioc-s4vectors (>= 0.24.4), r-bioc-iranges (>= 2.17.3), r-bioc-biocparallel, r-cran-matrix, libc6 (>= 2.17) Recommends: r-cran-runit, r-bioc-genefilter Suggests: r-bioc-summarizedexperiment, r-cran-knitr Section: gnu-r Priority: optional Homepage: https://bioconductor.org/packages/DelayedArray/ Description: BioConductor delayed operations on array-like objects Wrapping an array-like object (typically an on-disk object) in a DelayedArray object allows one to perform common array operations on it without loading the object in memory. In order to reduce memory usage and optimize performance, operations on the object are either delayed or executed using a block processing mechanism. 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requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build-Space: 5744 Build-Time: 38 Distribution: groovy-proposed Host Architecture: ppc64el Install-Time: 25 Job: r-bioc-delayedarray_0.12.3+dfsg-1.dsc Machine Architecture: ppc64el Package: r-bioc-delayedarray Package-Time: 64 Source-Version: 0.12.3+dfsg-1 Space: 5744 Status: successful Version: 0.12.3+dfsg-1 -------------------------------------------------------------------------------- Finished at 20200428-0404 Build needed 00:01:04, 5744k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=groovy --arch=ppc64el PACKAGEBUILD-19212265 Scanning for processes to kill in build PACKAGEBUILD-19212265