https://launchpad.net/ubuntu/+source/r-bioc-fmcsr/1.38.0+dfsg-1/+build/23744712 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-050 5.4.0-110-generic #124-Ubuntu SMP Thu Apr 14 13:14:54 UTC 2022 aarch64 Buildd toolchain package versions: launchpad-buildd_212~550~ubuntu20.04.1 python3-lpbuildd_212~550~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.4 dpkg-dev_1.19.7ubuntu3 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 13 May 18:05:56 ntpdate[1794]: adjust time server 10.211.37.1 offset -0.000037 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=kinetic --arch=armhf PACKAGEBUILD-23744712 --image-type chroot /home/buildd/filecache-default/79fdac36a488c6e88212165a95bdfa8206a1a899 Creating target for build PACKAGEBUILD-23744712 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=kinetic --arch=armhf PACKAGEBUILD-23744712 Starting target for build PACKAGEBUILD-23744712 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=kinetic --arch=armhf PACKAGEBUILD-23744712 'deb http://ftpmaster.internal/ubuntu kinetic main universe' 'deb http://ftpmaster.internal/ubuntu kinetic-security main universe' 'deb http://ftpmaster.internal/ubuntu kinetic-updates main universe' 'deb http://ftpmaster.internal/ubuntu kinetic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-23744712 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=kinetic --arch=armhf PACKAGEBUILD-23744712 Updating target for build PACKAGEBUILD-23744712 Get:1 http://ftpmaster.internal/ubuntu kinetic InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu kinetic-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu kinetic-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic/main armhf Packages [1326 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main Translation-en [511 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/universe armhf Packages [13.5 MB] Get:8 http://ftpmaster.internal/ubuntu kinetic/universe Translation-en [5689 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf Packages [157 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic-proposed/main Translation-en [69.8 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic-proposed/universe armhf Packages [819 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic-proposed/universe Translation-en [347 kB] Get:13 http://ftpmaster.internal/ubuntu kinetic-proposed/restricted armhf Packages [720 B] Get:14 http://ftpmaster.internal/ubuntu kinetic-proposed/restricted Translation-en [6720 B] Get:15 http://ftpmaster.internal/ubuntu kinetic-proposed/multiverse armhf Packages [5556 B] Get:16 http://ftpmaster.internal/ubuntu kinetic-proposed/multiverse Translation-en [7332 B] Fetched 23.0 MB in 8s (2856 kB/s) Reading package lists... W: Target Packages (main/binary-armhf/Packages) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/proposed.list:1 W: Target Translations (main/i18n/Translation-en) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (universe/binary-armhf/Packages) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/proposed.list:1 W: Target Translations (universe/i18n/Translation-en) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (main/binary-armhf/Packages) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/proposed.list:1 W: Target Translations (main/i18n/Translation-en) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (universe/binary-armhf/Packages) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/proposed.list:1 W: Target Translations (universe/i18n/Translation-en) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/proposed.list:1 Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: util-linux-extra The following packages will be upgraded: binutils binutils-arm-linux-gnueabihf binutils-common bsdutils cpp-11 dash debianutils dpkg dpkg-dev g++-11 gcc-11 gcc-11-base gcc-12-base libasan6 libassuan0 libatomic1 libbinutils libblkid1 libcc1-0 libctf-nobfd0 libctf0 libdpkg-perl libgcc-11-dev libgcc-s1 libgnutls30 libgomp1 libgpg-error0 libip4tc2 libjson-c5 libmount1 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libpcre3 libpng16-16 libreadline8 libseccomp2 libsmartcols1 libsqlite3-0 libssl3 libstdc++-11-dev libstdc++6 libtinfo6 libubsan1 libuuid1 libzstd1 linux-libc-dev lto-disabled-list mount ncurses-base ncurses-bin openssl pinentry-curses readline-common util-linux 60 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 56.1 MB of archives. After this operation, 871 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf bsdutils armhf 1:2.38-4ubuntu1 [86.3 kB] Get:2 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf debianutils armhf 5.7-0.2 [102 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libzstd1 armhf 1.5.2+dfsg-1 [243 kB] Get:4 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf dpkg armhf 1.21.7ubuntu3 [1302 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf dash armhf 0.5.11+git20210903+057cd650a4ed-8 [80.8 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf ncurses-bin armhf 6.3+20220423-2 [174 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libblkid1 armhf 2.38-4ubuntu1 [137 kB] Get:8 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libmount1 armhf 2.38-4ubuntu1 [153 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libsmartcols1 armhf 2.38-4ubuntu1 [94.9 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf util-linux-extra armhf 2.38-4ubuntu1 [98.7 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf util-linux armhf 2.38-4ubuntu1 [1157 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf ncurses-base all 6.3+20220423-2 [21.2 kB] Get:13 http://ftpmaster.internal/ubuntu kinetic/main armhf libpam0g armhf 1.4.0-13ubuntu1 [54.8 kB] Get:14 http://ftpmaster.internal/ubuntu kinetic/main armhf libpam-modules-bin armhf 1.4.0-13ubuntu1 [35.6 kB] Get:15 http://ftpmaster.internal/ubuntu kinetic/main armhf libpam-modules armhf 1.4.0-13ubuntu1 [261 kB] Get:16 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf mount armhf 2.38-4ubuntu1 [126 kB] Get:17 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libatomic1 armhf 12.1.0-1ubuntu1 [7608 B] Get:18 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libubsan1 armhf 12.1.0-1ubuntu1 [949 kB] Get:19 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf gcc-12-base armhf 12.1.0-1ubuntu1 [18.8 kB] Get:20 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libstdc++6 armhf 12.1.0-1ubuntu1 [602 kB] Get:21 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libgomp1 armhf 12.1.0-1ubuntu1 [109 kB] Get:22 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libcc1-0 armhf 12.1.0-1ubuntu1 [38.8 kB] Get:23 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libgcc-s1 armhf 12.1.0-1ubuntu1 [41.3 kB] Get:24 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libgpg-error0 armhf 1.45-2 [61.2 kB] Get:25 http://ftpmaster.internal/ubuntu kinetic/main armhf libpam-runtime all 1.4.0-13ubuntu1 [40.2 kB] Get:26 http://ftpmaster.internal/ubuntu kinetic/main armhf libpcre2-8-0 armhf 10.40-1 [197 kB] Get:27 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libpcre3 armhf 2:8.39-14 [225 kB] Get:28 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libncursesw6 armhf 6.3+20220423-2 [116 kB] Get:29 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libncurses6 armhf 6.3+20220423-2 [88.3 kB] Get:30 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libtinfo6 armhf 6.3+20220423-2 [83.6 kB] Get:31 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libuuid1 armhf 2.38-4ubuntu1 [22.8 kB] Get:32 http://ftpmaster.internal/ubuntu kinetic/main armhf libp11-kit0 armhf 0.24.1-1 [219 kB] Get:33 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libgnutls30 armhf 3.7.4-2ubuntu1 [940 kB] Get:34 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libseccomp2 armhf 2.5.4-1ubuntu1 [46.1 kB] Get:35 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libip4tc2 armhf 1.8.7-1ubuntu6 [17.5 kB] Get:36 http://ftpmaster.internal/ubuntu kinetic/main armhf libjson-c5 armhf 0.16-1 [29.2 kB] Get:37 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf readline-common all 8.1.2-1.2 [53.6 kB] Get:38 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libreadline8 armhf 8.1.2-1.2 [128 kB] Get:39 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libsqlite3-0 armhf 3.38.5-1 [548 kB] Get:40 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libssl3 armhf 3.0.3-0ubuntu1 [1554 kB] Get:41 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf openssl armhf 3.0.3-0ubuntu1 [1145 kB] Get:42 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libpng16-16 armhf 1.6.37-5 [167 kB] Get:43 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libctf-nobfd0 armhf 2.38-4ubuntu1 [93.5 kB] Get:44 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libctf0 armhf 2.38-4ubuntu1 [93.2 kB] Get:45 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf binutils-arm-linux-gnueabihf armhf 2.38-4ubuntu1 [3033 kB] Get:46 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libbinutils armhf 2.38-4ubuntu1 [489 kB] Get:47 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf binutils armhf 2.38-4ubuntu1 [3172 B] Get:48 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf binutils-common armhf 2.38-4ubuntu1 [221 kB] Get:49 http://ftpmaster.internal/ubuntu kinetic/main armhf libasan6 armhf 11.3.0-1ubuntu1 [2242 kB] Get:50 http://ftpmaster.internal/ubuntu kinetic/main armhf g++-11 armhf 11.3.0-1ubuntu1 [9025 kB] Get:51 http://ftpmaster.internal/ubuntu kinetic/main armhf gcc-11 armhf 11.3.0-1ubuntu1 [15.8 MB] Get:52 http://ftpmaster.internal/ubuntu kinetic/main armhf libstdc++-11-dev armhf 11.3.0-1ubuntu1 [2140 kB] Get:53 http://ftpmaster.internal/ubuntu kinetic/main armhf libgcc-11-dev armhf 11.3.0-1ubuntu1 [835 kB] Get:54 http://ftpmaster.internal/ubuntu kinetic/main armhf cpp-11 armhf 11.3.0-1ubuntu1 [7846 kB] Get:55 http://ftpmaster.internal/ubuntu kinetic/main armhf gcc-11-base armhf 11.3.0-1ubuntu1 [21.1 kB] Get:56 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf dpkg-dev all 1.21.7ubuntu3 [1070 kB] Get:57 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libdpkg-perl all 1.21.7ubuntu3 [236 kB] Get:58 http://ftpmaster.internal/ubuntu kinetic/main armhf lto-disabled-list all 25 [12.6 kB] Get:59 http://ftpmaster.internal/ubuntu kinetic/main armhf libassuan0 armhf 2.5.5-3 [30.7 kB] Get:60 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf linux-libc-dev armhf 5.15.0-28.29 [1308 kB] Get:61 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf pinentry-curses armhf 1.2.0-1 [36.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 56.1 MB in 2s (24.3 MB/s) (Reading database ... 13177 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.38-4ubuntu1_armhf.deb ... Unpacking bsdutils (1:2.38-4ubuntu1) over (1:2.37.2-4ubuntu3) ... Setting up bsdutils (1:2.38-4ubuntu1) ... (Reading database ... 13177 files and directories currently installed.) Preparing to unpack .../debianutils_5.7-0.2_armhf.deb ... Unpacking debianutils (5.7-0.2) over (5.5-1ubuntu2) ... Setting up debianutils (5.7-0.2) ... (Reading database ... 13176 files and directories currently installed.) Preparing to unpack .../libzstd1_1.5.2+dfsg-1_armhf.deb ... Unpacking libzstd1:armhf (1.5.2+dfsg-1) over (1.4.8+dfsg-3build1) ... Setting up libzstd1:armhf (1.5.2+dfsg-1) ... (Reading database ... 13176 files and directories currently installed.) Preparing to unpack .../dpkg_1.21.7ubuntu3_armhf.deb ... Unpacking dpkg (1.21.7ubuntu3) over (1.21.1ubuntu2) ... Setting up dpkg (1.21.7ubuntu3) ... dpkg: warning: This system uses merged-usr-via-aliased-dirs, going behind dpkg's dpkg: warning: back, breaking its core assumptions. 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Setting up lto-disabled-list (25) ... Setting up libsqlite3-0:armhf (3.38.5-1) ... Setting up binutils-common:armhf (2.38-4ubuntu1) ... Setting up libssl3:armhf (3.0.3-0ubuntu1) ... Setting up linux-libc-dev:armhf (5.15.0-28.29) ... Setting up libctf-nobfd0:armhf (2.38-4ubuntu1) ... Setting up libassuan0:armhf (2.5.5-3) ... Setting up libgomp1:armhf (12.1.0-1ubuntu1) ... Setting up libasan6:armhf (11.3.0-1ubuntu1) ... Setting up libncurses6:armhf (6.3+20220423-2) ... Setting up libpng16-16:armhf (1.6.37-5) ... Setting up libatomic1:armhf (12.1.0-1ubuntu1) ... Setting up util-linux (2.38-4ubuntu1) ... Setting up libncursesw6:armhf (6.3+20220423-2) ... Setting up libdpkg-perl (1.21.7ubuntu3) ... Setting up libubsan1:armhf (12.1.0-1ubuntu1) ... Setting up libgcc-11-dev:armhf (11.3.0-1ubuntu1) ... Setting up mount (2.38-4ubuntu1) ... Setting up libbinutils:armhf (2.38-4ubuntu1) ... Setting up openssl (3.0.3-0ubuntu1) ... Setting up libjson-c5:armhf (0.16-1) ... Setting up readline-common (8.1.2-1.2) ... Setting up libcc1-0:armhf (12.1.0-1ubuntu1) ... Setting up libctf0:armhf (2.38-4ubuntu1) ... Setting up pinentry-curses (1.2.0-1) ... Setting up cpp-11 (11.3.0-1ubuntu1) ... Setting up libreadline8:armhf (8.1.2-1.2) ... Setting up libstdc++-11-dev:armhf (11.3.0-1ubuntu1) ... Setting up binutils-arm-linux-gnueabihf (2.38-4ubuntu1) ... Setting up binutils (2.38-4ubuntu1) ... Setting up dpkg-dev (1.21.7ubuntu3) ... Setting up gcc-11 (11.3.0-1ubuntu1) ... Setting up g++-11 (11.3.0-1ubuntu1) ... Processing triggers for debianutils (5.7-0.2) ... Processing triggers for libc-bin (2.35-0ubuntu3) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-23744712 armhf kinetic-proposed -c chroot:build-PACKAGEBUILD-23744712 --arch=armhf --dist=kinetic-proposed --nolog r-bioc-fmcsr_1.38.0+dfsg-1.dsc Initiating build PACKAGEBUILD-23744712 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-110-generic #124-Ubuntu SMP Thu Apr 14 13:14:54 UTC 2022 armv7l sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-arm64-050.buildd +==============================================================================+ | r-bioc-fmcsr 1.38.0+dfsg-1 (armhf) Fri, 13 May 2022 18:06:39 +0000 | +==============================================================================+ Package: r-bioc-fmcsr Version: 1.38.0+dfsg-1 Source Version: 1.38.0+dfsg-1 Distribution: kinetic-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-23744712/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-fmcsr-qeSfdo/resolver-0Cdefr' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-bioc-fmcsr_1.38.0+dfsg-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/r-bioc-fmcsr-qeSfdo/r-bioc-fmcsr-1.38.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-fmcsr-qeSfdo' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-chemminer, r-cran-runit, r-bioc-biocgenerics, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-chemminer, r-cran-runit, r-bioc-biocgenerics, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [407 B] Get:5 copy:/<>/apt_archive ./ Packages [490 B] Fetched 1854 B in 0s (52.4 kB/s) Reading package lists... Reading package lists... W: Target Packages (main/binary-armhf/Packages) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (universe/binary-armhf/Packages) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/proposed.list:1 Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils dctrl-tools debhelper debugedit dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome fonts-glyphicons-halflings gettext gettext-base gfortran gfortran-11 groff-base icu-devtools intltool-debian libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libbz2-dev libcairo-gobject2 libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdw1 libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran-11-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu71 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-microplugin.js libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 libldap-2.5-0 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev librsvg2-2 librtmp1 libsasl2-2 libsasl2-modules-db libscalar-list-utils-perl libsigsegv2 libsm6 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libuv1 libvariable-magic-perl libwebp7 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db node-html5shiv node-normalize.css pkg-config po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-chemminer r-cran-base64enc r-cran-bh r-cran-bitops r-cran-cli r-cran-colorspace r-cran-commonmark r-cran-crayon r-cran-crosstalk r-cran-dbi r-cran-digest r-cran-dt r-cran-ellipsis r-cran-fansi r-cran-farver r-cran-fastmap r-cran-ggplot2 r-cran-glue r-cran-gridextra r-cran-gtable r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-isoband r-cran-jsonlite r-cran-labeling r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-png r-cran-promises r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-rjson r-cran-rlang r-cran-rsvg r-cran-runit r-cran-scales r-cran-shiny r-cran-sourcetools r-cran-stringi r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xtable r-cran-yaml shared-mime-info ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc gfortran-11-doc libcoarrays-dev groff liblapack-doc libboost-doc libboost1.74-doc libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev icu-doc libjs-jquery-ui-docs liblzma-doc ncurses-doc libscalar-number-perl readline-doc librsvg2-bin tcl8.6 tk8.6 libtool-doc gcj-jdk libbusiness-isbn-perl libwww-perl libcurl4-gnutls-dev m4-doc apparmor less www-browser nodejs libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo r-bioc-biobase r-bioc-s4vectors r-bioc-iranges r-bioc-genomicranges r-bioc-delayedarray r-bioc-biostrings r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-rsqlite r-cran-scatterplot3d r-cran-gplots r-bioc-fmcsr r-cran-snow r-cran-rpostgresql r-bioc-biocstyle r-cran-knitr r-cran-rmarkdown r-cran-biocmanager r-cran-callr r-cran-covr r-cran-processx r-cran-ps r-cran-rstudioapi r-cran-whoami r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-dplyr r-cran-jpeg r-cran-viridis r-cran-curl r-cran-testthat r-cran-xml2 r-cran-rmysql r-cran-testit r-cran-unitizer r-cran-forcats r-cran-r.utils r-cran-stringr r-cran-waldo r-cran-cairo r-cran-ragg r-cran-magick r-cran-sf r-cran-httr r-cran-r.rsp r-cran-tidyverse r-cran-getopt r-cran-bit64 r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-survival r-cran-units r-cran-vdiffr r-cran-purrr r-cran-inline r-cran-xml r-cran-fs r-cran-usethis r-cran-spelling r-cran-svglite r-cran-dichromat r-cran-markdown r-cran-bench r-cran-blob r-cran-brio r-cran-evaluate r-cran-hms r-cran-pkgbuild r-cran-pkgload r-cran-tidyr r-cran-zeallot r-cran-plm r-cran-zoo Recommended packages: devscripts cme git-buildpackage curl | wget | lynx bzip2-doc libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl libgdk-pixbuf2.0-bin libglib2.0-data xdg-user-dirs libclone-perl javascript-common libldap-common libdevel-partialdump-perl libpng-tools publicsuffix librsvg2-common libsasl2-modules libltdl-dev libmail-sendmail-perl r-recommended r-doc-html r-cran-testthat r-cran-mockery r-cran-sass r-cran-covr r-cran-ragg r-cran-dplyr r-cran-hexbin r-cran-hmisc r-cran-interp r-cran-knitr r-cran-mapproj r-cran-maps r-cran-maptools r-cran-multcomp r-cran-quantreg r-cran-rmarkdown r-cran-rpart r-cran-sf r-cran-svglite r-cran-vdiffr r-cran-xml2 r-cran-markdown r-cran-curl r-cran-sp r-cran-lubridate r-cran-future r-cran-bit64 r-cran-hms r-cran-dygraphs r-cran-data.table r-cran-rsqlite r-cran-mockr r-cran-generics r-cran-waldo libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils dctrl-tools debhelper debugedit dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome fonts-glyphicons-halflings gettext gettext-base gfortran gfortran-11 groff-base icu-devtools intltool-debian libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libbz2-dev libcairo-gobject2 libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdw1 libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran-11-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu71 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-microplugin.js libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 libldap-2.5-0 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev librsvg2-2 librtmp1 libsasl2-2 libsasl2-modules-db libscalar-list-utils-perl libsigsegv2 libsm6 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libuv1 libvariable-magic-perl libwebp7 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db node-html5shiv node-normalize.css pkg-config po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-chemminer r-cran-base64enc r-cran-bh r-cran-bitops r-cran-cli r-cran-colorspace r-cran-commonmark r-cran-crayon r-cran-crosstalk r-cran-dbi r-cran-digest r-cran-dt r-cran-ellipsis r-cran-fansi r-cran-farver r-cran-fastmap r-cran-ggplot2 r-cran-glue r-cran-gridextra r-cran-gtable r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-isoband r-cran-jsonlite r-cran-labeling r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-png r-cran-promises r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-rjson r-cran-rlang r-cran-rsvg r-cran-runit r-cran-scales r-cran-shiny r-cran-sourcetools r-cran-stringi r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xtable r-cran-yaml sbuild-build-depends-main-dummy shared-mime-info ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 259 newly installed, 0 to remove and 0 not upgraded. Need to get 144 MB of archives. After this operation, 474 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [706 B] Get:2 http://ftpmaster.internal/ubuntu kinetic/main armhf libmd0 armhf 1.0.4-1build1 [22.5 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libbsd0 armhf 0.11.6-1 [39.8 kB] Get:4 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libelf1 armhf 0.187-1 [43.1 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libexpat1 armhf 2.4.8-1 [66.4 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main armhf libfribidi0 armhf 1.0.8-2ubuntu3.1 [23.9 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/main armhf libglib2.0-0 armhf 2.72.1-1 [1325 kB] Get:8 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libicu71 armhf 71.1-3 [10.3 MB] Get:9 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libxml2 armhf 2.9.14+dfsg-1 [592 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic/main armhf shared-mime-info armhf 2.2-1 [457 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic/main armhf ucf all 3.0043 [56.1 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf bsdextrautils armhf 2.38-4ubuntu1 [76.6 kB] Get:13 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libmagic-mgc armhf 1:5.41-4 [257 kB] Get:14 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libmagic1 armhf 1:5.41-4 [80.1 kB] Get:15 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf file armhf 1:5.41-4 [20.6 kB] Get:16 http://ftpmaster.internal/ubuntu kinetic/main armhf gettext-base armhf 0.21-4ubuntu4 [38.0 kB] Get:17 http://ftpmaster.internal/ubuntu kinetic/main armhf libuchardet0 armhf 0.0.7-1build2 [75.7 kB] Get:18 http://ftpmaster.internal/ubuntu kinetic/main armhf groff-base armhf 1.22.4-8build1 [870 kB] Get:19 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libnghttp2-14 armhf 1.47.0-1 [63.2 kB] Get:20 http://ftpmaster.internal/ubuntu kinetic/main armhf libpipeline1 armhf 1.5.6-1 [25.5 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http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf xauth armhf 1:1.1.1-1 [23.9 kB] Get:32 http://ftpmaster.internal/ubuntu kinetic/main armhf libsigsegv2 armhf 2.13-1ubuntu3 [13.7 kB] Get:33 http://ftpmaster.internal/ubuntu kinetic/main armhf m4 armhf 1.4.18-5ubuntu2 [191 kB] Get:34 http://ftpmaster.internal/ubuntu kinetic/main armhf autoconf all 2.71-2 [338 kB] Get:35 http://ftpmaster.internal/ubuntu kinetic/main armhf autotools-dev all 20220109.1 [44.9 kB] Get:36 http://ftpmaster.internal/ubuntu kinetic/main armhf automake all 1:1.16.5-1.3 [558 kB] Get:37 http://ftpmaster.internal/ubuntu kinetic/main armhf autopoint all 0.21-4ubuntu4 [422 kB] Get:38 http://ftpmaster.internal/ubuntu kinetic/main armhf dctrl-tools armhf 2.24-3build2 [57.2 kB] Get:39 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libdebhelper-perl all 13.7.1ubuntu1 [66.9 kB] Get:40 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libtool all 2.4.7-4 [166 kB] Get:41 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Get:51 http://ftpmaster.internal/ubuntu kinetic/main armhf po-debconf all 1.0.21+nmu1 [233 kB] Get:52 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf debhelper all 13.7.1ubuntu1 [940 kB] Get:53 http://ftpmaster.internal/ubuntu kinetic/main armhf zip armhf 3.0-12build2 [166 kB] Get:54 http://ftpmaster.internal/ubuntu kinetic/main armhf unzip armhf 6.0-26ubuntu3 [162 kB] Get:55 http://ftpmaster.internal/ubuntu kinetic/main armhf libpaper1 armhf 1.1.28build2 [12.8 kB] Get:56 http://ftpmaster.internal/ubuntu kinetic/main armhf libpaper-utils armhf 1.1.28build2 [8242 B] Get:57 http://ftpmaster.internal/ubuntu kinetic/main armhf xdg-utils all 1.1.3-4.1ubuntu2 [62.0 kB] Get:58 http://ftpmaster.internal/ubuntu kinetic/main armhf libblas3 armhf 3.10.0-2ubuntu1 [118 kB] Get:59 http://ftpmaster.internal/ubuntu kinetic/main armhf libbrotli1 armhf 1.0.9-2build6 [306 kB] Get:60 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libfreetype6 armhf 2.12.1+dfsg-1 [324 kB] Get:61 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Get:80 http://ftpmaster.internal/ubuntu kinetic/main armhf libgraphite2-3 armhf 1.3.14-1build2 [65.2 kB] Get:81 http://ftpmaster.internal/ubuntu kinetic/main armhf libharfbuzz0b armhf 2.7.4-1ubuntu4 [335 kB] Get:82 http://ftpmaster.internal/ubuntu kinetic/main armhf libthai-data all 0.1.29-1build1 [162 kB] Get:83 http://ftpmaster.internal/ubuntu kinetic/main armhf libdatrie1 armhf 0.2.13-2 [16.8 kB] Get:84 http://ftpmaster.internal/ubuntu kinetic/main armhf libthai0 armhf 0.1.29-1build1 [15.8 kB] Get:85 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libpango-1.0-0 armhf 1.50.7+ds-1 [205 kB] Get:86 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libpangoft2-1.0-0 armhf 1.50.7+ds-1 [45.7 kB] Get:87 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libpangocairo-1.0-0 armhf 1.50.7+ds-1 [34.4 kB] Get:88 http://ftpmaster.internal/ubuntu kinetic/main armhf libtcl8.6 armhf 8.6.12+dfsg-1build1 [911 kB] Get:89 http://ftpmaster.internal/ubuntu kinetic/main armhf libdeflate0 armhf 1.10-2 [59.2 kB] Get:90 http://ftpmaster.internal/ubuntu kinetic/main armhf libjbig0 armhf 2.1-3.1build3 [25.1 kB] Get:91 http://ftpmaster.internal/ubuntu kinetic/main armhf libwebp7 armhf 1.2.2-2 [166 kB] Get:92 http://ftpmaster.internal/ubuntu kinetic/main armhf libtiff5 armhf 4.3.0-7 [165 kB] Get:93 http://ftpmaster.internal/ubuntu kinetic/main armhf libxft2 armhf 2.3.4-1 [35.1 kB] Get:94 http://ftpmaster.internal/ubuntu kinetic/main armhf x11-common all 1:7.7+23ubuntu2 [23.4 kB] Get:95 http://ftpmaster.internal/ubuntu kinetic/main armhf libxss1 armhf 1:1.2.3-1build2 [7580 B] Get:96 http://ftpmaster.internal/ubuntu kinetic/main armhf libtk8.6 armhf 8.6.12-1build1 [689 kB] Get:97 http://ftpmaster.internal/ubuntu kinetic/main armhf libice6 armhf 2:1.0.10-1build2 [36.4 kB] Get:98 http://ftpmaster.internal/ubuntu kinetic/main armhf libsm6 armhf 2:1.2.3-1build2 [15.1 kB] Get:99 http://ftpmaster.internal/ubuntu kinetic/main armhf libxt6 armhf 1:1.2.1-1 [146 kB] Get:100 http://ftpmaster.internal/ubuntu kinetic-proposed/universe armhf r-base-core armhf 4.2.0-1ubuntu1 [27.9 MB] Get:101 http://ftpmaster.internal/ubuntu kinetic/main armhf libgfortran-11-dev armhf 11.3.0-1ubuntu1 [343 kB] Get:102 http://ftpmaster.internal/ubuntu kinetic/main armhf gfortran-11 armhf 11.3.0-1ubuntu1 [8410 kB] Get:103 http://ftpmaster.internal/ubuntu kinetic/main armhf gfortran armhf 4:11.2.0-1ubuntu1 [1172 B] Get:104 http://ftpmaster.internal/ubuntu kinetic/main armhf libblas-dev armhf 3.10.0-2ubuntu1 [125 kB] Get:105 http://ftpmaster.internal/ubuntu kinetic/main armhf liblapack-dev armhf 3.10.0-2ubuntu1 [2005 kB] Get:106 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libncurses-dev armhf 6.3+20220423-2 [341 kB] Get:107 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libncurses5-dev armhf 6.3+20220423-2 [792 B] Get:108 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libreadline-dev armhf 8.1.2-1.2 [151 kB] Get:109 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http://ftpmaster.internal/ubuntu kinetic/main armhf libfile-which-perl all 1.27-1 [14.3 kB] Get:129 http://ftpmaster.internal/ubuntu kinetic/universe armhf libswitch-perl all 2.17-2.1 [18.3 kB] Get:130 http://ftpmaster.internal/ubuntu kinetic/main armhf libencode-locale-perl all 1.05-1.1 [11.8 kB] Get:131 http://ftpmaster.internal/ubuntu kinetic/main armhf libtimedate-perl all 2.3300-2 [34.0 kB] Get:132 http://ftpmaster.internal/ubuntu kinetic/main armhf libhttp-date-perl all 6.05-1 [9920 B] Get:133 http://ftpmaster.internal/ubuntu kinetic/main armhf libio-html-perl all 1.004-3 [15.9 kB] Get:134 http://ftpmaster.internal/ubuntu kinetic/main armhf liblwp-mediatypes-perl all 6.04-1 [19.5 kB] Get:135 http://ftpmaster.internal/ubuntu kinetic/main armhf liburi-perl all 5.10-1 [78.8 kB] Get:136 http://ftpmaster.internal/ubuntu kinetic/main armhf libhttp-message-perl all 6.36-1 [76.8 kB] Get:137 http://ftpmaster.internal/ubuntu kinetic/main armhf libparams-util-perl armhf 1.102-1build3 [21.4 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Get:165 http://ftpmaster.internal/ubuntu kinetic/universe armhf libmoose-perl armhf 2.2200-1build1 [747 kB] Get:166 http://ftpmaster.internal/ubuntu kinetic/main armhf libvariable-magic-perl armhf 0.62-1build5 [33.0 kB] Get:167 http://ftpmaster.internal/ubuntu kinetic/main armhf libb-hooks-endofscope-perl all 0.26-1 [17.8 kB] Get:168 http://ftpmaster.internal/ubuntu kinetic/main armhf libsub-identify-perl armhf 0.14-1build5 [9848 B] Get:169 http://ftpmaster.internal/ubuntu kinetic/main armhf libnamespace-clean-perl all 0.27-1 [13.6 kB] Get:170 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libcurl3-gnutls armhf 7.83.1-1 [245 kB] Get:171 http://ftpmaster.internal/ubuntu kinetic/universe armhf libwww-curl-perl armhf 4.17-7build2 [58.6 kB] Get:172 http://ftpmaster.internal/ubuntu kinetic/universe armhf libwww-curl-simple-perl all 0.100191-2 [10.9 kB] Get:173 http://ftpmaster.internal/ubuntu kinetic/universe armhf dh-r all 20210218ubuntu1 [36.4 kB] Get:174 http://ftpmaster.internal/ubuntu kinetic/main armhf fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] Get:175 http://ftpmaster.internal/ubuntu kinetic/universe armhf fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-2 [117 kB] Get:176 http://ftpmaster.internal/ubuntu kinetic-proposed/main armhf libboost1.74-dev armhf 1.74.0-14ubuntu4 [9616 kB] Get:177 http://ftpmaster.internal/ubuntu kinetic/main armhf libboost-dev armhf 1.74.0.3ubuntu7 [3490 B] Get:178 http://ftpmaster.internal/ubuntu kinetic/main armhf libcairo-gobject2 armhf 1.16.0-5ubuntu2 [18.0 kB] Get:179 http://ftpmaster.internal/ubuntu kinetic/main armhf libgdk-pixbuf2.0-common all 2.42.8+dfsg-1 [5880 B] Get:180 http://ftpmaster.internal/ubuntu kinetic/main armhf libgdk-pixbuf-2.0-0 armhf 2.42.8+dfsg-1 [134 kB] Get:181 http://ftpmaster.internal/ubuntu kinetic/universe armhf libjs-bootstrap all 3.4.1+dfsg-2 [124 kB] Get:182 http://ftpmaster.internal/ubuntu kinetic/universe armhf libjs-d3 all 3.5.17-4 [132 kB] Get:183 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1.7.6-1build2 [801 kB] Get:257 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-cran-bh all 1.74.0-2 [5564 B] Get:258 http://ftpmaster.internal/ubuntu kinetic-proposed/universe armhf r-bioc-chemminer armhf 3.48.0+dfsg-1 [1165 kB] Get:259 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-cran-runit all 0.4.32-3 [283 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 144 MB in 6s (24.5 MB/s) Selecting previously unselected package libmd0:armhf. 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Setting up libtcl8.6:armhf (8.6.12+dfsg-1build1) ... Setting up autopoint (0.21-4ubuntu4) ... Setting up libb-hooks-op-check-perl (0.22-1build5) ... Setting up icu-devtools (71.1-3) ... Setting up pkg-config (0.29.2-1ubuntu3) ... Setting up fonts-dejavu-core (2.37-2build1) ... Setting up ucf (3.0043) ... Setting up libjpeg-turbo8:armhf (2.1.2-0ubuntu1) ... Setting up libparams-util-perl (1.102-1build3) ... Setting up libsasl2-2:armhf (2.1.27+dfsg2-3ubuntu1) ... Setting up libssh-4:armhf (0.9.6-2build1) ... Setting up libgfortran5:armhf (12.1.0-1ubuntu1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libwebp7:armhf (1.2.2-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up liblzma-dev:armhf (5.2.5-2ubuntu1) ... Setting up libsub-name-perl (0.26-1build3) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2ubuntu9) ... Setting up libpcre2-posix3:armhf (10.40-1) ... Setting up libmd0:armhf (1.0.4-1build1) ... Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... Setting up libuchardet0:armhf (0.0.7-1build2) ... Setting up libncurses5-dev:armhf (6.3+20220423-2) ... Setting up libsub-override-perl (0.09-2) ... Setting up libharfbuzz0b:armhf (2.7.4-1ubuntu4) ... Setting up libthai-data (0.1.29-1build1) ... Setting up libdevel-globaldestruction-perl (0.14-1.1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libboost-dev:armhf (1.74.0.3ubuntu7) ... Setting up libjs-jquery (3.6.0+dfsg+~3.5.13-1) ... Setting up libbsd0:armhf (0.11.6-1) ... Setting up node-normalize.css (8.0.1-5) ... Setting up libelf1:armhf (0.187-1) ... Setting up libicu-dev:armhf (71.1-3) ... Setting up libxml2:armhf (2.9.14+dfsg-1) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up xdg-utils (1.1.3-4.1ubuntu2) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up liburi-perl (5.10-1) ... Setting up libblas-dev:armhf (3.10.0-2ubuntu1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode Setting up dctrl-tools (2.24-3build2) ... Setting up libjs-bootstrap (3.4.1+dfsg-2) ... Setting up libbz2-dev:armhf (1.0.8-5build1) ... Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... Setting up libjs-jquery-datatables-extensions (0.0+git20150910.28fd64e+dfsg-5) ... Setting up libjpeg8:armhf (8c-2ubuntu10) ... Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up r-cran-bh (1.74.0-2) ... Setting up libpaper1:armhf (1.1.28build2) ... Creating config file /etc/papersize with new version Setting up libice6:armhf (2:1.0.10-1build2) ... Setting up libhttp-date-perl (6.05-1) ... Setting up libdw1:armhf (0.187-1) ... Setting up libjpeg-turbo8-dev:armhf (2.1.2-0ubuntu1) ... Setting up libxdmcp6:armhf (1:1.1.3-0ubuntu5) ... Setting up liblapack3:armhf (3.10.0-2ubuntu1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libxcb1:armhf (1.14-3ubuntu3) ... Setting up gettext (0.21-4ubuntu4) ... Setting up libpcre2-dev:armhf (10.40-1) ... Setting up libtool (2.4.7-4) ... Setting up libxcb-render0:armhf (1.14-3ubuntu3) ... Setting up libpcre3-dev:armhf (2:8.39-14) ... Setting up libgfortran-11-dev:armhf (11.3.0-1ubuntu1) ... Setting up fontconfig-config (2.13.1-4.2ubuntu5) ... Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... Setting up libpng-dev:armhf (1.6.37-5) ... Setting up m4 (1.4.18-5ubuntu2) ... Setting up libxcb-shm0:armhf (1.14-3ubuntu3) ... Setting up libpaper-utils (1.1.28build2) ... Setting up libclass-c3-perl (0.35-1) ... Setting up libdevel-callchecker-perl (0.008-1ubuntu4) ... Setting up libldap-2.5-0:armhf (2.5.11+dfsg-1~exp1ubuntu3) ... Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libthai0:armhf (0.1.29-1build1) ... Setting up libjs-jquery-ui (1.13.1+dfsg-1) ... Setting up shared-mime-info (2.2-1) ... Setting up liblapack-dev:armhf (3.10.0-2ubuntu1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode Setting up libdata-optlist-perl (0.112-1) ... Setting up gfortran-11 (11.3.0-1ubuntu1) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14-1build2) ... Setting up groff-base (1.22.4-8build1) ... Setting up debugedit (1:5.0-4build1) ... Setting up libcurl4:armhf (7.83.1-1) ... Setting up libx11-6:armhf (2:1.7.5-1) ... Setting up libtiff5:armhf (4.3.0-7) ... Setting up libfontconfig1:armhf (2.13.1-4.2ubuntu5) ... Setting up libmro-compat-perl (0.15-1) ... Setting up libjpeg8-dev:armhf (8c-2ubuntu10) ... Setting up libsm6:armhf (2:1.2.3-1build2) ... Setting up libxmuu1:armhf (2:1.1.3-3) ... Setting up libsub-exporter-perl (0.988-1) ... Setting up libhttp-message-perl (6.36-1) ... Setting up libeval-closure-perl (0.14-1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up fontconfig (2.13.1-4.2ubuntu5) ... Regenerating fonts cache... done. Setting up libxrender1:armhf (1:0.9.10-1build4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libparams-classify-perl (0.015-1build5) ... Setting up libpango-1.0-0:armhf (1.50.7+ds-1) ... Setting up libjpeg-dev:armhf (8c-2ubuntu10) ... Setting up libxext6:armhf (2:1.3.4-1build1) ... Setting up libcurl3-gnutls:armhf (7.83.1-1) ... Setting up man-db (2.10.2-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up gfortran (4:11.2.0-1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:armhf (1.16.0-5ubuntu2) ... Setting up dh-autoreconf (20) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libdist-checkconflicts-perl (0.11-1.1) ... Setting up libxt6:armhf (1:1.2.1-1) ... Setting up xauth (1:1.1.1-1) ... Setting up libgdk-pixbuf-2.0-0:armhf (2.42.8+dfsg-1) ... Setting up libcairo-gobject2:armhf (1.16.0-5ubuntu2) ... Setting up libxss1:armhf (1:1.2.3-1build2) ... Setting up libpangoft2-1.0-0:armhf (1.50.7+ds-1) ... Setting up libpangocairo-1.0-0:armhf (1.50.7+ds-1) ... Setting up libxft2:armhf (2.3.4-1) ... Setting up libmodule-implementation-perl (0.09-1.1) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libtk8.6:armhf (8.6.12-1build1) ... Setting up libwww-curl-perl (4.17-7build2) ... Setting up debhelper (13.7.1ubuntu1) ... Setting up libmodule-runtime-conflicts-perl (0.003-1.1) ... Setting up libclass-load-perl (0.25-1) ... Setting up librsvg2-2:armhf (2.52.5+dfsg-3) ... Setting up r-base-core (4.2.0-1ubuntu1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.5.1-1) ... Setting up r-cran-gtable (0.3.0+dfsg-2build1) ... Setting up r-cran-labeling (0.4.2-1) ... Setting up r-cran-sourcetools (0.1.7-3) ... Setting up r-cran-rsvg (2.2.0-1) ... Setting up r-cran-lattice (0.20-45-3) ... Setting up r-cran-nlme (3.1.157-1) ... Setting up r-cran-farver (2.1.0-1) ... Setting up libpackage-deprecationmanager-perl (0.17-1.1) ... Setting up r-cran-viridislite (0.4.0-2) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-1build7) ... Setting up r-cran-lazyeval (0.2.2-1build1) ... Setting up r-cran-commonmark (1.8.0-1) ... Setting up r-cran-r6 (2.5.1-1) ... Setting up r-cran-pkgkitten (0.2.2-2) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up r-cran-magrittr (2.0.3-1) ... Setting up r-cran-littler (0.3.15-1) ... Setting up r-cran-rcpp (1.0.8.3-1) ... Setting up r-bioc-biocgenerics (0.42.0-1) ... Setting up r-cran-rlang (1.0.2-1) ... Setting up r-base-dev (4.2.0-1ubuntu1) ... Setting up r-cran-withr (2.5.0-1) ... Setting up r-cran-mime (0.12-1) ... Setting up libmoose-perl:armhf (2.2200-1build1) ... Setting up r-cran-base64enc (0.1-3-3) ... Setting up r-cran-digest (0.6.29-1) ... Setting up r-cran-yaml (2.3.5-1) ... Setting up r-cran-dbi (1.1.2-1) ... Setting up r-cran-fansi (1.0.3-1) ... Setting up r-cran-mass (7.3-57-1) ... Setting up r-cran-glue (1.6.2-1) ... Setting up r-cran-xtable (1:1.8-4-2) ... Setting up r-cran-cli (3.3.0-1) ... Setting up r-cran-lifecycle (1.0.1-1) ... Setting up r-cran-bitops (1.0-7-1) ... Setting up r-cran-fastmap (1.1.0-1) ... Setting up r-cran-png (0.1-7-4) ... Setting up r-cran-jsonlite (1.8.0+dfsg-1) ... Setting up r-cran-pkgconfig (2.0.3-2build1) ... Setting up r-cran-utf8 (1.2.2-1) ... Setting up r-cran-colorspace (2.0-3+dfsg-1) ... Setting up r-cran-stringi (1.7.6-1build2) ... Setting up r-cran-rcolorbrewer (1.1-2-3) ... Setting up r-cran-isoband (0.2.5-1) ... Setting up r-cran-runit (0.4.32-3) ... Setting up r-cran-gridextra (2.3-3build1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up r-cran-later (1.3.0+dfsg-1) ... Setting up r-cran-matrix (1.4-1-1) ... Setting up r-cran-htmltools (0.5.2-1) ... Setting up r-cran-mgcv (1.8-40-1) ... Setting up r-cran-rjson (0.2.21-1) ... Setting up r-cran-rcurl (1.98-1.6-1) ... Setting up r-cran-vctrs (0.4.1-1) ... Setting up r-cran-ellipsis (0.3.2-2) ... Setting up libwww-curl-simple-perl (0.100191-2) ... Setting up r-cran-munsell (0.5.0-2build1) ... Setting up r-cran-htmlwidgets (1.5.4+dfsg-1) ... Setting up r-cran-scales (1.2.0-1) ... Setting up r-cran-promises (1.2.0.1+dfsg-1) ... Setting up dh-r (20210218ubuntu1) ... Setting up r-cran-pillar (1.7.0+dfsg-1) ... Setting up r-cran-httpuv (1.6.5+dfsg-1) ... Setting up r-cran-tibble (3.1.7+dfsg-1) ... Setting up r-cran-shiny (1.5.0+dfsg-2) ... Setting up r-cran-crosstalk (1.2.0+dfsg-1) ... Setting up r-cran-dt (0.17+dfsg-3) ... Setting up r-cran-ggplot2 (3.3.6+dfsg-1) ... Setting up r-bioc-chemminer (3.48.0+dfsg-1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.35-0ubuntu3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-110-generic #124-Ubuntu SMP Thu Apr 14 13:14:54 UTC 2022 arm64 (armv7l) Toolchain package versions: binutils_2.38-4ubuntu1 dpkg-dev_1.21.7ubuntu3 g++-11_11.3.0-1ubuntu1 gcc-11_11.3.0-1ubuntu1 libc6-dev_2.35-0ubuntu3 libstdc++-11-dev_11.3.0-1ubuntu1 libstdc++6_12.1.0-1ubuntu1 linux-libc-dev_5.15.0-28.29 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1ubuntu2 apt_2.4.5 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-4ubuntu4 autotools-dev_20220109.1 base-files_12ubuntu5 base-passwd_3.5.52build1 bash_5.1-6ubuntu1 binutils_2.38-4ubuntu1 binutils-arm-linux-gnueabihf_2.38-4ubuntu1 binutils-common_2.38-4ubuntu1 bsdextrautils_2.38-4ubuntu1 bsdutils_1:2.38-4ubuntu1 build-essential_12.9ubuntu3 bzip2_1.0.8-5build1 ca-certificates_20211016 coreutils_8.32-4.1ubuntu1 cpp_4:11.2.0-1ubuntu1 cpp-11_11.3.0-1ubuntu1 dash_0.5.11+git20210903+057cd650a4ed-8 dctrl-tools_2.24-3build2 debconf_1.5.79ubuntu1 debhelper_13.7.1ubuntu1 debianutils_5.7-0.2 debugedit_1:5.0-4build1 dh-autoreconf_20 dh-r_20210218ubuntu1 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-0ubuntu2 dpkg_1.21.7ubuntu3 dpkg-dev_1.21.7ubuntu3 dwz_0.14-1build2 e2fsprogs_1.46.5-2ubuntu1 fakeroot_1.28-1ubuntu1 file_1:5.41-4 findutils_4.8.0-1ubuntu3 fontconfig_2.13.1-4.2ubuntu5 fontconfig-config_2.13.1-4.2ubuntu5 fonts-dejavu-core_2.37-2build1 fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1 fonts-glyphicons-halflings_1.009~3.4.1+dfsg-2 g++_4:11.2.0-1ubuntu1 g++-11_11.3.0-1ubuntu1 gcc_4:11.2.0-1ubuntu1 gcc-11_11.3.0-1ubuntu1 gcc-11-base_11.3.0-1ubuntu1 gcc-12-base_12.1.0-1ubuntu1 gettext_0.21-4ubuntu4 gettext-base_0.21-4ubuntu4 gfortran_4:11.2.0-1ubuntu1 gfortran-11_11.3.0-1ubuntu1 gpg_2.2.27-3ubuntu2 gpg-agent_2.2.27-3ubuntu2 gpgconf_2.2.27-3ubuntu2 gpgv_2.2.27-3ubuntu2 grep_3.7-1build1 groff-base_1.22.4-8build1 gzip_1.10-4ubuntu4 hostname_3.23ubuntu2 icu-devtools_71.1-3 init_1.62 init-system-helpers_1.62 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libalgorithm-c3-perl_0.11-1 libapparmor1_3.0.4-2ubuntu2 libapt-pkg6.0_2.4.5 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.3 libasan6_11.3.0-1ubuntu1 libassuan0_2.5.5-3 libatomic1_12.1.0-1ubuntu1 libattr1_1:2.5.1-1build1 libaudit-common_1:3.0.7-1build1 libaudit1_1:3.0.7-1build1 libb-hooks-endofscope-perl_0.26-1 libb-hooks-op-check-perl_0.22-1build5 libbinutils_2.38-4ubuntu1 libblas-dev_3.10.0-2ubuntu1 libblas3_3.10.0-2ubuntu1 libblkid1_2.38-4ubuntu1 libboost-dev_1.74.0.3ubuntu7 libboost1.74-dev_1.74.0-14ubuntu4 libbrotli1_1.0.9-2build6 libbsd0_0.11.6-1 libbz2-1.0_1.0.8-5build1 libbz2-dev_1.0.8-5build1 libc-bin_2.35-0ubuntu3 libc-dev-bin_2.35-0ubuntu3 libc6_2.35-0ubuntu3 libc6-dev_2.35-0ubuntu3 libcairo-gobject2_1.16.0-5ubuntu2 libcairo2_1.16.0-5ubuntu2 libcap-ng0_0.7.9-2.2build3 libcap2_1:2.44-1build3 libcc1-0_12.1.0-1ubuntu1 libclass-c3-perl_0.35-1 libclass-load-perl_0.25-1 libclass-load-xs-perl_0.10-1build7 libcom-err2_1.46.5-2ubuntu1 libcrypt-dev_1:4.4.27-1 libcrypt1_1:4.4.27-1 libcryptsetup12_2:2.4.3-1ubuntu1 libctf-nobfd0_2.38-4ubuntu1 libctf0_2.38-4ubuntu1 libcurl3-gnutls_7.83.1-1 libcurl4_7.83.1-1 libdata-optlist-perl_0.112-1 libdatrie1_0.2.13-2 libdb5.3_5.3.28+dfsg1-0.8ubuntu3 libdebconfclient0_0.261ubuntu1 libdebhelper-perl_13.7.1ubuntu1 libdeflate0_1.10-2 libdevel-callchecker-perl_0.008-1ubuntu4 libdevel-globaldestruction-perl_0.14-1.1 libdevel-overloadinfo-perl_0.007-1 libdevel-stacktrace-perl_2.0400-1 libdevmapper1.02.1_2:1.02.175-2.1ubuntu4 libdist-checkconflicts-perl_0.11-1.1 libdpkg-perl_1.21.7ubuntu3 libdw1_0.187-1 libdynaloader-functions-perl_0.003-1.1 libelf1_0.187-1 libencode-locale-perl_1.05-1.1 libeval-closure-perl_0.14-1 libexpat1_2.4.8-1 libext2fs2_1.46.5-2ubuntu1 libfakeroot_1.28-1ubuntu1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libfile-which-perl_1.27-1 libfontconfig1_2.13.1-4.2ubuntu5 libfreetype6_2.12.1+dfsg-1 libfribidi0_1.0.8-2ubuntu3.1 libgcc-11-dev_11.3.0-1ubuntu1 libgcc-s1_12.1.0-1ubuntu1 libgcrypt20_1.9.4-3ubuntu3 libgdbm-compat4_1.23-1 libgdbm6_1.23-1 libgdk-pixbuf-2.0-0_2.42.8+dfsg-1 libgdk-pixbuf2.0-common_2.42.8+dfsg-1 libgfortran-11-dev_11.3.0-1ubuntu1 libgfortran5_12.1.0-1ubuntu1 libglib2.0-0_2.72.1-1 libgmp10_2:6.2.1+dfsg-3ubuntu1 libgnutls30_3.7.4-2ubuntu1 libgomp1_12.1.0-1ubuntu1 libgpg-error0_1.45-2 libgraphite2-3_1.3.14-1build2 libgssapi-krb5-2_1.19.2-2 libharfbuzz0b_2.7.4-1ubuntu4 libhogweed6_3.7.3-1build2 libhttp-date-perl_6.05-1 libhttp-message-perl_6.36-1 libice6_2:1.0.10-1build2 libicu-dev_71.1-3 libicu71_71.1-3 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r-cran-munsell_0.5.0-2build1 r-cran-nlme_3.1.157-1 r-cran-pillar_1.7.0+dfsg-1 r-cran-pkgconfig_2.0.3-2build1 r-cran-pkgkitten_0.2.2-2 r-cran-png_0.1-7-4 r-cran-promises_1.2.0.1+dfsg-1 r-cran-r6_2.5.1-1 r-cran-rcolorbrewer_1.1-2-3 r-cran-rcpp_1.0.8.3-1 r-cran-rcurl_1.98-1.6-1 r-cran-rjson_0.2.21-1 r-cran-rlang_1.0.2-1 r-cran-rsvg_2.2.0-1 r-cran-runit_0.4.32-3 r-cran-scales_1.2.0-1 r-cran-shiny_1.5.0+dfsg-2 r-cran-sourcetools_0.1.7-3 r-cran-stringi_1.7.6-1build2 r-cran-tibble_3.1.7+dfsg-1 r-cran-utf8_1.2.2-1 r-cran-vctrs_0.4.1-1 r-cran-viridislite_0.4.0-2 r-cran-withr_2.5.0-1 r-cran-xtable_1:1.8-4-2 r-cran-yaml_2.3.5-1 readline-common_8.1.2-1.2 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1ubuntu2 sensible-utils_0.0.17 shared-mime-info_2.2-1 systemd_249.11-0ubuntu3.1 systemd-sysv_249.11-0ubuntu3.1 sysvinit-utils_3.01-1ubuntu1 tar_1.34+dfsg-1build3 tzdata_2022a-0ubuntu1 ubuntu-keyring_2021.03.26 ucf_3.0043 unzip_6.0-26ubuntu3 usrmerge_25ubuntu2 util-linux_2.38-4ubuntu1 util-linux-extra_2.38-4ubuntu1 x11-common_1:7.7+23ubuntu2 xauth_1:1.1.1-1 xdg-utils_1.1.3-4.1ubuntu2 xz-utils_5.2.5-2ubuntu1 zip_3.0-12build2 zlib1g_1:1.2.11.dfsg-2ubuntu9 zlib1g-dev_1:1.2.11.dfsg-2ubuntu9 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-fmcsr Binary: r-bioc-fmcsr Architecture: any Version: 1.38.0+dfsg-1 Maintainer: Debian R Packages Maintainers Uploaders: Andreas Tille Homepage: https://bioconductor.org/packages/fmcsR/ Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-fmcsr Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-fmcsr.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-chemminer, r-cran-runit, r-bioc-biocgenerics Package-List: r-bioc-fmcsr deb gnu-r optional arch=any Checksums-Sha1: 3ecc09bd7d078cae48315a730475c76ce8693602 65304 r-bioc-fmcsr_1.38.0+dfsg.orig.tar.xz ea799270bb546a716d1139179f363a2b47b2c93b 5876 r-bioc-fmcsr_1.38.0+dfsg-1.debian.tar.xz Checksums-Sha256: 54ee824c34a13cc0cc4bfc22d1d75917745abb2b144ea5ef6773fb59bd138fa4 65304 r-bioc-fmcsr_1.38.0+dfsg.orig.tar.xz 068de0febb72a4843ad49781822f8646595279f408900a2dd67ec32395d0773f 5876 r-bioc-fmcsr_1.38.0+dfsg-1.debian.tar.xz Files: 8d01aacf9b855e77ad490a7b8b85f607 65304 r-bioc-fmcsr_1.38.0+dfsg.orig.tar.xz cd1c77ab2773512ac4d9458ea1bb2692 5876 r-bioc-fmcsr_1.38.0+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmJ+MGYRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEShRAAmyarJo7h9kNguv09LV974rlPu80gp4ob 7LWKeMn/2oZfG7/fE+R2ngVrEOW1YE3SXThW7s4M0Ls0ARy1+Iodvnppxo02xuSX J9elVeDk7TdBVk+2FacNr7UXfp/bCcolcx9uTu2jrliktsC5dZ0Wm6b/ZDQXr1zt r87W7RE6mB3kMgYti0yYBpciEBsonflvMMgY8YQ8IGEB63LDln3gTOa8uTeB99mp 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free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-23744712 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-23744712 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-23744712 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package r-bioc-fmcsr dpkg-buildpackage: info: source version 1.38.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary-arch dh binary-arch --buildsystem R dh_update_autotools_config -a -O--buildsystem=R dh_autoreconf -a -O--buildsystem=R configure.ac:32: warning: AC_OUTPUT should be used without arguments. configure.ac:32: You should run autoupdate. dh_auto_configure -a -O--buildsystem=R dh_auto_build -a -O--buildsystem=R dh_auto_test -a -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=R dh_prep -a -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-fmcsr/ -a -O--buildsystem=R I: R Package: fmcsR Version: 1.38.0 I: Building using R version 4.2.0-1ubuntu1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Fri, 13 May 2022 12:15:28 +0200 mkdir -p /<>/r-bioc-fmcsr-1.38.0\+dfsg/debian/r-bioc-fmcsr/usr/lib/R/site-library R CMD INSTALL -l /<>/r-bioc-fmcsr-1.38.0\+dfsg/debian/r-bioc-fmcsr/usr/lib/R/site-library --clean . "--built-timestamp='Fri, 13 May 2022 12:15:28 +0200'" * installing *source* package ‘fmcsR’ ... ** using staged installation checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for _Bool... yes checking for stdbool.h that conforms to C99... yes checking for inline... inline checking for size_t... yes checking for alarm... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating config.h ** libs make[1]: Entering directory '/<>/src' g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-iU2FaU/r-base-4.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c MCS.cpp -o MCS.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-iU2FaU/r-base-4.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c MCSCompound.cpp -o MCSCompound.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-iU2FaU/r-base-4.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c MCSMap.cpp -o MCSMap.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-iU2FaU/r-base-4.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c MCSRingDetector.cpp -o MCSRingDetector.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-iU2FaU/r-base-4.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fmcs_R_wrap.cpp -o fmcs_R_wrap.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-iU2FaU/r-base-4.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c util.cpp -o util.o g++ -std=gnu++14 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o fmcsR.so MCS.o MCSCompound.o MCSMap.o MCSRingDetector.o fmcs_R_wrap.o util.o -L/usr/lib/R/lib -lR make[1]: Leaving directory '/<>/src' make[1]: Entering directory '/<>/src' make[1]: Leaving directory '/<>/src' installing to /<>/debian/r-bioc-fmcsr/usr/lib/R/site-library/00LOCK-r-bioc-fmcsr-1.38.0+dfsg/00new/fmcsR/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fmcsR) Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 301. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 304. W: Ignoring specified R dependency: R (>= 2.10.0) I: Using r-bioc-chemminer for Depends:ChemmineR I: Using r-bioc-biocstyle for Suggests:BiocStyle I: Using r-cran-knitr for Suggests:knitr W: Cannot find a debian package for Suggests:knitcitations W: Cannot find a debian package for Suggests:knitrBootstrap I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-cran-runit for Imports:RUnit I: Using r-bioc-chemminer for Imports:ChemmineR I: Using r-bioc-biocgenerics for Imports:BiocGenerics I: BioConductor API version: r-api-bioc-3.15 I: Use r-bioc-fmcsr as Debian binary package for variables substitution dh_installdocs -a -O--buildsystem=R dh_installchangelogs -a -O--buildsystem=R dh_installsystemduser -a -O--buildsystem=R dh_perl -a -O--buildsystem=R dh_link -a -O--buildsystem=R dh_strip_nondeterminism -a -O--buildsystem=R dh_compress -a -O--buildsystem=R dh_fixperms -a -O--buildsystem=R dh_missing -a -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R 465d32c0be1c3fb4b1c22b8b119378264983f2b0 dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -a -O--buildsystem=R dh_gencontrol -a -O--buildsystem=R dh_md5sums -a -O--buildsystem=R dh_builddeb -a -O--buildsystem=R INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing r-bioc-fmcsr (in debian/r-bioc-fmcsr); do_strip: , oemstrip: pkgstriptranslations: processing r-bioc-fmcsr-dbgsym (in debian/.debhelper/r-bioc-fmcsr/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-bioc-fmcsr/DEBIAN/control, package r-bioc-fmcsr, directory debian/r-bioc-fmcsr pkgstripfiles: processing control file: debian/.debhelper/r-bioc-fmcsr/dbgsym-root/DEBIAN/control, package r-bioc-fmcsr-dbgsym, directory debian/.debhelper/r-bioc-fmcsr/dbgsym-root dpkg-deb: building package 'r-bioc-fmcsr-dbgsym' in 'debian/.debhelper/scratch-space/build-r-bioc-fmcsr/r-bioc-fmcsr-dbgsym_1.38.0+dfsg-1_armhf.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-bioc-fmcsr ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-bioc-fmcsr' in '../r-bioc-fmcsr_1.38.0+dfsg-1_armhf.deb'. Renaming r-bioc-fmcsr-dbgsym_1.38.0+dfsg-1_armhf.deb to r-bioc-fmcsr-dbgsym_1.38.0+dfsg-1_armhf.ddeb dpkg-genbuildinfo --build=any -O../r-bioc-fmcsr_1.38.0+dfsg-1_armhf.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../r-bioc-fmcsr_1.38.0+dfsg-1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-05-13T18:08:53Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-bioc-fmcsr_1.38.0+dfsg-1_armhf.changes: ----------------------------------------- Format: 1.8 Date: Fri, 13 May 2022 12:15:28 +0200 Source: r-bioc-fmcsr Binary: r-bioc-fmcsr Built-For-Profiles: noudeb Architecture: armhf Version: 1.38.0+dfsg-1 Distribution: kinetic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: r-bioc-fmcsr - GNU R mismatch tolerant maximum common substructure searching Changes: r-bioc-fmcsr (1.38.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) * Fix lintian override Checksums-Sha1: b56917366d8632e217cc5604f485c7f93c9ddbd1 753572 r-bioc-fmcsr-dbgsym_1.38.0+dfsg-1_armhf.ddeb c9ac44bda9fda391fba8d5ff6b75148acc32b533 13695 r-bioc-fmcsr_1.38.0+dfsg-1_armhf.buildinfo f1b0ce5f27dc757d6264444633ee2ad5219376fc 220710 r-bioc-fmcsr_1.38.0+dfsg-1_armhf.deb Checksums-Sha256: ab18f43013d93ea63efbac9e3667d5a4b063b7f40236ce67536e2fa7d30878d2 753572 r-bioc-fmcsr-dbgsym_1.38.0+dfsg-1_armhf.ddeb 382ef3406c9098e57ad5b68385c64de1e471517c8723cdd87ea1ce9e012ecce6 13695 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r-bioc-fmcsr-dbgsym_1.38.0+dfsg-1_armhf.ddeb 9c88ddccf3f3f7ba35a7ba46ef2cb15d 220710 r-bioc-fmcsr_1.38.0+dfsg-1_armhf.deb Checksums-Sha1: b56917366d8632e217cc5604f485c7f93c9ddbd1 753572 r-bioc-fmcsr-dbgsym_1.38.0+dfsg-1_armhf.ddeb f1b0ce5f27dc757d6264444633ee2ad5219376fc 220710 r-bioc-fmcsr_1.38.0+dfsg-1_armhf.deb Checksums-Sha256: ab18f43013d93ea63efbac9e3667d5a4b063b7f40236ce67536e2fa7d30878d2 753572 r-bioc-fmcsr-dbgsym_1.38.0+dfsg-1_armhf.ddeb 97d4f655e7475d8ce1fa9fe8a7508fee505d3365c3a4e466f980ec36b9d134f2 220710 r-bioc-fmcsr_1.38.0+dfsg-1_armhf.deb Build-Origin: Ubuntu Build-Architecture: armhf Build-Date: Fri, 13 May 2022 18:08:52 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-4ubuntu4), autotools-dev (= 20220109.1), base-files (= 12ubuntu5), base-passwd (= 3.5.52build1), bash (= 5.1-6ubuntu1), binutils (= 2.38-4ubuntu1), binutils-arm-linux-gnueabihf (= 2.38-4ubuntu1), binutils-common (= 2.38-4ubuntu1), bsdextrautils (= 2.38-4ubuntu1), bsdutils (= 1:2.38-4ubuntu1), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), ca-certificates (= 20211016), coreutils (= 8.32-4.1ubuntu1), cpp (= 4:11.2.0-1ubuntu1), cpp-11 (= 11.3.0-1ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-8), dctrl-tools (= 2.24-3build2), debconf (= 1.5.79ubuntu1), debhelper (= 13.7.1ubuntu1), debianutils (= 5.7-0.2), debugedit (= 1:5.0-4build1), dh-autoreconf (= 20), dh-r (= 20210218ubuntu1), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-0ubuntu2), dpkg (= 1.21.7ubuntu3), dpkg-dev (= 1.21.7ubuntu3), dwz (= 0.14-1build2), file (= 1:5.41-4), findutils (= 4.8.0-1ubuntu3), fontconfig (= 2.13.1-4.2ubuntu5), fontconfig-config (= 2.13.1-4.2ubuntu5), fonts-dejavu-core (= 2.37-2build1), fonts-font-awesome (= 5.0.10+really4.7.0~dfsg-4.1), fonts-glyphicons-halflings (= 1.009~3.4.1+dfsg-2), g++ (= 4:11.2.0-1ubuntu1), g++-11 (= 11.3.0-1ubuntu1), gcc (= 4:11.2.0-1ubuntu1), gcc-11 (= 11.3.0-1ubuntu1), gcc-11-base (= 11.3.0-1ubuntu1), gcc-12-base (= 12.1.0-1ubuntu1), gettext (= 0.21-4ubuntu4), gettext-base (= 0.21-4ubuntu4), gfortran (= 4:11.2.0-1ubuntu1), gfortran-11 (= 11.3.0-1ubuntu1), grep (= 3.7-1build1), groff-base (= 1.22.4-8build1), gzip (= 1.10-4ubuntu4), hostname (= 3.23ubuntu2), icu-devtools (= 71.1-3), init-system-helpers (= 1.62), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libalgorithm-c3-perl (= 0.11-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.3.0-1ubuntu1), libatomic1 (= 12.1.0-1ubuntu1), libattr1 (= 1:2.5.1-1build1), libaudit-common (= 1:3.0.7-1build1), libaudit1 (= 1:3.0.7-1build1), libb-hooks-endofscope-perl (= 0.26-1), libb-hooks-op-check-perl (= 0.22-1build5), libbinutils (= 2.38-4ubuntu1), libblas-dev (= 3.10.0-2ubuntu1), libblas3 (= 3.10.0-2ubuntu1), libblkid1 (= 2.38-4ubuntu1), libboost-dev (= 1.74.0.3ubuntu7), libboost1.74-dev (= 1.74.0-14ubuntu4), libbrotli1 (= 1.0.9-2build6), libbsd0 (= 0.11.6-1), libbz2-1.0 (= 1.0.8-5build1), libbz2-dev (= 1.0.8-5build1), libc-bin (= 2.35-0ubuntu3), libc-dev-bin (= 2.35-0ubuntu3), libc6 (= 2.35-0ubuntu3), libc6-dev (= 2.35-0ubuntu3), libcairo-gobject2 (= 1.16.0-5ubuntu2), libcairo2 (= 1.16.0-5ubuntu2), libcap-ng0 (= 0.7.9-2.2build3), libcap2 (= 1:2.44-1build3), libcc1-0 (= 12.1.0-1ubuntu1), libclass-c3-perl (= 0.35-1), libclass-load-perl (= 0.25-1), libclass-load-xs-perl (= 0.10-1build7), libcom-err2 (= 1.46.5-2ubuntu1), libcrypt-dev (= 1:4.4.27-1), libcrypt1 (= 1:4.4.27-1), libctf-nobfd0 (= 2.38-4ubuntu1), libctf0 (= 2.38-4ubuntu1), libcurl3-gnutls (= 7.83.1-1), libcurl4 (= 7.83.1-1), libdata-optlist-perl (= 0.112-1), libdatrie1 (= 0.2.13-2), libdb5.3 (= 5.3.28+dfsg1-0.8ubuntu3), libdebconfclient0 (= 0.261ubuntu1), libdebhelper-perl (= 13.7.1ubuntu1), libdeflate0 (= 1.10-2), libdevel-callchecker-perl (= 0.008-1ubuntu4), libdevel-globaldestruction-perl (= 0.14-1.1), libdevel-overloadinfo-perl (= 0.007-1), libdevel-stacktrace-perl (= 2.0400-1), libdist-checkconflicts-perl (= 0.11-1.1), libdpkg-perl (= 1.21.7ubuntu3), libdw1 (= 0.187-1), libdynaloader-functions-perl (= 0.003-1.1), libelf1 (= 0.187-1), libencode-locale-perl (= 1.05-1.1), libeval-closure-perl (= 0.14-1), libexpat1 (= 2.4.8-1), libffi8 (= 3.4.2-4), libfile-stripnondeterminism-perl (= 1.13.0-1), libfile-which-perl (= 1.27-1), libfontconfig1 (= 2.13.1-4.2ubuntu5), libfreetype6 (= 2.12.1+dfsg-1), libfribidi0 (= 1.0.8-2ubuntu3.1), libgcc-11-dev (= 11.3.0-1ubuntu1), libgcc-s1 (= 12.1.0-1ubuntu1), libgcrypt20 (= 1.9.4-3ubuntu3), libgdbm-compat4 (= 1.23-1), libgdbm6 (= 1.23-1), libgdk-pixbuf-2.0-0 (= 2.42.8+dfsg-1), libgdk-pixbuf2.0-common (= 2.42.8+dfsg-1), libgfortran-11-dev (= 11.3.0-1ubuntu1), libgfortran5 (= 12.1.0-1ubuntu1), libglib2.0-0 (= 2.72.1-1), libgmp10 (= 2:6.2.1+dfsg-3ubuntu1), libgnutls30 (= 3.7.4-2ubuntu1), libgomp1 (= 12.1.0-1ubuntu1), libgpg-error0 (= 1.45-2), libgraphite2-3 (= 1.3.14-1build2), libgssapi-krb5-2 (= 1.19.2-2), libharfbuzz0b (= 2.7.4-1ubuntu4), libhogweed6 (= 3.7.3-1build2), libhttp-date-perl (= 6.05-1), libhttp-message-perl (= 6.36-1), libice6 (= 2:1.0.10-1build2), libicu-dev (= 71.1-3), libicu71 (= 71.1-3), libidn2-0 (= 2.3.2-2build1), libio-html-perl (= 1.004-3), libisl23 (= 0.24-2build1), libjbig0 (= 2.1-3.1build3), libjpeg-dev (= 8c-2ubuntu10), libjpeg-turbo8 (= 2.1.2-0ubuntu1), libjpeg-turbo8-dev (= 2.1.2-0ubuntu1), libjpeg8 (= 8c-2ubuntu10), libjpeg8-dev (= 8c-2ubuntu10), libjs-bootstrap (= 3.4.1+dfsg-2), libjs-d3 (= 3.5.17-4), libjs-es5-shim (= 4.6.6-1), libjs-highlight.js (= 9.18.5+dfsg1-2), libjs-jquery (= 3.6.0+dfsg+~3.5.13-1), libjs-jquery-datatables (= 1.11.5+dfsg-2), libjs-jquery-datatables-extensions (= 0.0+git20150910.28fd64e+dfsg-5), libjs-jquery-selectize.js (= 0.12.6+dfsg-1.1), libjs-jquery-ui (= 1.13.1+dfsg-1), libjs-json (= 0~20210531+~1.0.8-1), libjs-microplugin.js (= 0.0.3+dfsg-1.1), libjs-sifter.js (= 0.6.0+dfsg-2), libjs-twitter-bootstrap-datepicker (= 1.3.1+dfsg1-4.1), libk5crypto3 (= 1.19.2-2), libkeyutils1 (= 1.6.1-2ubuntu3), libkrb5-3 (= 1.19.2-2), libkrb5support0 (= 1.19.2-2), liblapack-dev (= 3.10.0-2ubuntu1), liblapack3 (= 3.10.0-2ubuntu1), libldap-2.5-0 (= 2.5.11+dfsg-1~exp1ubuntu3), liblwp-mediatypes-perl (= 6.04-1), liblz4-1 (= 1.9.3-2build2), liblzma-dev (= 5.2.5-2ubuntu1), liblzma5 (= 5.2.5-2ubuntu1), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmd0 (= 1.0.4-1build1), libmodule-implementation-perl (= 0.09-1.1), libmodule-runtime-conflicts-perl (= 0.003-1.1), libmodule-runtime-perl (= 0.016-1), libmoose-perl (= 2.2200-1build1), libmount1 (= 2.38-4ubuntu1), libmpc3 (= 1.2.1-2build1), libmpfr6 (= 4.1.0-3build3), libmro-compat-perl (= 0.15-1), libnamespace-clean-perl (= 0.27-1), libncurses-dev (= 6.3+20220423-2), libncurses5-dev (= 6.3+20220423-2), libncurses6 (= 6.3+20220423-2), libncursesw6 (= 6.3+20220423-2), libnettle8 (= 3.7.3-1build2), libnghttp2-14 (= 1.47.0-1), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libp11-kit0 (= 0.24.1-1), libpackage-deprecationmanager-perl (= 0.17-1.1), libpackage-stash-perl (= 0.40-1), libpackage-stash-xs-perl (= 0.29-1build5), libpam-modules (= 1.4.0-13ubuntu1), libpam-modules-bin (= 1.4.0-13ubuntu1), libpam-runtime (= 1.4.0-13ubuntu1), libpam0g (= 1.4.0-13ubuntu1), libpango-1.0-0 (= 1.50.7+ds-1), libpangocairo-1.0-0 (= 1.50.7+ds-1), libpangoft2-1.0-0 (= 1.50.7+ds-1), libpaper-utils (= 1.1.28build2), libpaper1 (= 1.1.28build2), libparams-classify-perl (= 0.015-1build5), libparams-util-perl (= 1.102-1build3), libpcre16-3 (= 2:8.39-14), libpcre2-16-0 (= 10.40-1), libpcre2-32-0 (= 10.40-1), libpcre2-8-0 (= 10.40-1), libpcre2-dev (= 10.40-1), libpcre2-posix3 (= 10.40-1), libpcre3 (= 2:8.39-14), libpcre3-dev (= 2:8.39-14), libpcre32-3 (= 2:8.39-14), libpcrecpp0v5 (= 2:8.39-14), libperl5.34 (= 5.34.0-3ubuntu1), libpipeline1 (= 1.5.6-1), libpixman-1-0 (= 0.40.0-1build4), libpng-dev (= 1.6.37-5), libpng16-16 (= 1.6.37-5), libpsl5 (= 0.21.0-1.2build2), libreadline-dev (= 8.1.2-1.2), libreadline8 (= 8.1.2-1.2), librsvg2-2 (= 2.52.5+dfsg-3), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build4), libsasl2-2 (= 2.1.27+dfsg2-3ubuntu1), libsasl2-modules-db (= 2.1.27+dfsg2-3ubuntu1), libscalar-list-utils-perl (= 1:1.62-1), libseccomp2 (= 2.5.4-1ubuntu1), libselinux1 (= 3.3-1build2), libsigsegv2 (= 2.13-1ubuntu3), libsm6 (= 2:1.2.3-1build2), libsmartcols1 (= 2.38-4ubuntu1), libssh-4 (= 0.9.6-2build1), libssl3 (= 3.0.3-0ubuntu1), libstdc++-11-dev (= 11.3.0-1ubuntu1), libstdc++6 (= 12.1.0-1ubuntu1), libsub-exporter-perl (= 0.988-1), libsub-exporter-progressive-perl (= 0.001013-1), libsub-identify-perl (= 0.14-1build5), libsub-install-perl (= 0.928-1.1), libsub-name-perl (= 0.26-1build3), libsub-override-perl (= 0.09-2), libswitch-perl (= 2.17-2.1), libsystemd0 (= 249.11-0ubuntu3.1), libtasn1-6 (= 4.18.0-4build1), libtcl8.6 (= 8.6.12+dfsg-1build1), libthai-data (= 0.1.29-1build1), libthai0 (= 0.1.29-1build1), libtiff5 (= 4.3.0-7), libtimedate-perl (= 2.3300-2), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.2-2build1), libtirpc-dev (= 1.3.2-2build1), libtirpc3 (= 1.3.2-2build1), libtk8.6 (= 8.6.12-1build1), libtool (= 2.4.7-4), libtry-tiny-perl (= 0.31-1), libubsan1 (= 12.1.0-1ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 249.11-0ubuntu3.1), libunistring2 (= 1.0-1), liburi-perl (= 5.10-1), libuuid1 (= 2.38-4ubuntu1), libuv1 (= 1.44.1-2), libvariable-magic-perl (= 0.62-1build5), libwebp7 (= 1.2.2-2), libwww-curl-perl (= 4.17-7build2), libwww-curl-simple-perl (= 0.100191-2), libx11-6 (= 2:1.7.5-1), libx11-data (= 2:1.7.5-1), libxau6 (= 1:1.0.9-1build5), libxcb-render0 (= 1.14-3ubuntu3), libxcb-shm0 (= 1.14-3ubuntu3), libxcb1 (= 1.14-3ubuntu3), libxdmcp6 (= 1:1.1.3-0ubuntu5), libxext6 (= 2:1.3.4-1build1), libxft2 (= 2.3.4-1), libxml2 (= 2.9.14+dfsg-1), libxmuu1 (= 2:1.1.3-3), libxrender1 (= 1:0.9.10-1build4), libxss1 (= 1:1.2.3-1build2), libxt6 (= 1:1.2.1-1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.15.0-28.29), login (= 1:4.8.1-2ubuntu2), lsb-base (= 11.1.0ubuntu4), lto-disabled-list (= 25), m4 (= 1.4.18-5ubuntu2), make (= 4.3-4.1build1), man-db (= 2.10.2-1), mawk (= 1.3.4.20200120-3), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), node-html5shiv (= 3.7.3+dfsg-4), node-normalize.css (= 8.0.1-5), openssl (= 3.0.3-0ubuntu1), patch (= 2.7.6-7build2), perl (= 5.34.0-3ubuntu1), perl-base (= 5.34.0-3ubuntu1), perl-modules-5.34 (= 5.34.0-3ubuntu1), pkg-config (= 0.29.2-1ubuntu3), po-debconf (= 1.0.21+nmu1), r-base-core (= 4.2.0-1ubuntu1), r-base-dev (= 4.2.0-1ubuntu1), r-bioc-biocgenerics (= 0.42.0-1), r-bioc-chemminer (= 3.48.0+dfsg-1), r-cran-base64enc (= 0.1-3-3), r-cran-bh (= 1.74.0-2), r-cran-bitops (= 1.0-7-1), r-cran-cli (= 3.3.0-1), r-cran-colorspace (= 2.0-3+dfsg-1), r-cran-commonmark (= 1.8.0-1), r-cran-crayon (= 1.5.1-1), r-cran-crosstalk (= 1.2.0+dfsg-1), r-cran-dbi (= 1.1.2-1), r-cran-digest (= 0.6.29-1), r-cran-dt (= 0.17+dfsg-3), r-cran-ellipsis (= 0.3.2-2), r-cran-fansi (= 1.0.3-1), r-cran-farver (= 2.1.0-1), r-cran-fastmap (= 1.1.0-1), r-cran-ggplot2 (= 3.3.6+dfsg-1), r-cran-glue (= 1.6.2-1), r-cran-gridextra (= 2.3-3build1), r-cran-gtable (= 0.3.0+dfsg-2build1), r-cran-htmltools (= 0.5.2-1), r-cran-htmlwidgets (= 1.5.4+dfsg-1), r-cran-httpuv (= 1.6.5+dfsg-1), r-cran-isoband (= 0.2.5-1), r-cran-jsonlite (= 1.8.0+dfsg-1), r-cran-labeling (= 0.4.2-1), r-cran-later (= 1.3.0+dfsg-1), r-cran-lattice (= 0.20-45-3), r-cran-lazyeval (= 0.2.2-1build1), r-cran-lifecycle (= 1.0.1-1), r-cran-littler (= 0.3.15-1), r-cran-magrittr (= 2.0.3-1), r-cran-mass (= 7.3-57-1), r-cran-matrix (= 1.4-1-1), r-cran-mgcv (= 1.8-40-1), r-cran-mime (= 0.12-1), r-cran-munsell (= 0.5.0-2build1), r-cran-nlme (= 3.1.157-1), r-cran-pillar (= 1.7.0+dfsg-1), r-cran-pkgconfig (= 2.0.3-2build1), r-cran-pkgkitten (= 0.2.2-2), r-cran-png (= 0.1-7-4), r-cran-promises (= 1.2.0.1+dfsg-1), r-cran-r6 (= 2.5.1-1), r-cran-rcolorbrewer (= 1.1-2-3), r-cran-rcpp (= 1.0.8.3-1), r-cran-rcurl (= 1.98-1.6-1), r-cran-rjson (= 0.2.21-1), r-cran-rlang (= 1.0.2-1), r-cran-rsvg (= 2.2.0-1), r-cran-runit (= 0.4.32-3), r-cran-scales (= 1.2.0-1), r-cran-shiny (= 1.5.0+dfsg-2), r-cran-sourcetools (= 0.1.7-3), r-cran-stringi (= 1.7.6-1build2), r-cran-tibble (= 3.1.7+dfsg-1), r-cran-utf8 (= 1.2.2-1), r-cran-vctrs (= 0.4.1-1), r-cran-viridislite (= 0.4.0-2), r-cran-withr (= 2.5.0-1), r-cran-xtable (= 1:1.8-4-2), r-cran-yaml (= 2.3.5-1), readline-common (= 8.1.2-1.2), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.8-1ubuntu2), sensible-utils (= 0.0.17), shared-mime-info (= 2.2-1), sysvinit-utils (= 3.01-1ubuntu1), tar (= 1.34+dfsg-1build3), tzdata (= 2022a-0ubuntu1), ucf (= 3.0043), unzip (= 6.0-26ubuntu3), util-linux (= 2.38-4ubuntu1), util-linux-extra (= 2.38-4ubuntu1), x11-common (= 1:7.7+23ubuntu2), xauth (= 1:1.1.1-1), xdg-utils (= 1.1.3-4.1ubuntu2), xz-utils (= 5.2.5-2ubuntu1), zip (= 3.0-12build2), zlib1g (= 1:1.2.11.dfsg-2ubuntu9), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu9) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1652436928" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-bioc-fmcsr_1.38.0+dfsg-1_armhf.deb ------------------------------------ new Debian package, version 2.0. size 220710 bytes: control archive=1805 bytes. 1273 bytes, 23 lines control 2382 bytes, 31 lines md5sums Package: r-bioc-fmcsr Version: 1.38.0+dfsg-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian R Packages Maintainers Installed-Size: 351 Depends: r-base-core (>= 4.2.0-1ubuntu1), r-api-4.0, r-api-bioc-3.15, r-bioc-chemminer, r-cran-runit, r-bioc-biocgenerics, libc6 (>= 2.4), libgcc-s1 (>= 3.5), libstdc++6 (>= 11) Suggests: r-bioc-biocstyle, r-cran-knitr, r-cran-rmarkdown Section: gnu-r Priority: optional Homepage: https://bioconductor.org/packages/fmcsR/ Description: GNU R mismatch tolerant maximum common substructure searching The fmcsR package introduces an efficient maximum common substructure (MCS) algorithms combined with a novel matching strategy that allows for atom and/or bond mismatches in the substructures shared among two small molecules. The resulting flexible MCSs (FMCSs) are often larger than strict MCSs, resulting in the identification of more common features in their source structures, as well as a higher sensitivity in finding compounds with weak structural similarities. The fmcsR package provides several utilities to use the FMCS algorithm for pairwise compound comparisons, structure similarity searching and clustering. drwxr-xr-x root/root 0 2022-05-13 10:15 ./ drwxr-xr-x root/root 0 2022-05-13 10:15 ./usr/ drwxr-xr-x root/root 0 2022-05-13 10:15 ./usr/lib/ drwxr-xr-x root/root 0 2022-05-13 10:15 ./usr/lib/R/ drwxr-xr-x root/root 0 2022-05-13 10:15 ./usr/lib/R/site-library/ drwxr-xr-x root/root 0 2022-05-13 10:15 ./usr/lib/R/site-library/fmcsR/ -rw-r--r-- root/root 86 2022-05-13 10:15 ./usr/lib/R/site-library/fmcsR/CITATION -rw-r--r-- root/root 1763 2022-05-13 10:15 ./usr/lib/R/site-library/fmcsR/DESCRIPTION -rw-r--r-- root/root 324 2022-05-13 10:15 ./usr/lib/R/site-library/fmcsR/INDEX drwxr-xr-x root/root 0 2022-05-13 10:15 ./usr/lib/R/site-library/fmcsR/Meta/ -rw-r--r-- root/root 541 2022-05-13 10:15 ./usr/lib/R/site-library/fmcsR/Meta/Rd.rds -rw-r--r-- root/root 118 2022-05-13 10:15 ./usr/lib/R/site-library/fmcsR/Meta/data.rds -rw-r--r-- root/root 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./usr/share/doc/r-bioc-fmcsr/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: any Build-Space: 3596 Build-Time: 71 Distribution: kinetic-proposed Host Architecture: armhf Install-Time: 61 Job: r-bioc-fmcsr_1.38.0+dfsg-1.dsc Machine Architecture: arm64 Package: r-bioc-fmcsr Package-Time: 134 Source-Version: 1.38.0+dfsg-1 Space: 3596 Status: successful Version: 1.38.0+dfsg-1 -------------------------------------------------------------------------------- Finished at 2022-05-13T18:08:53Z Build needed 00:02:14, 3596k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=kinetic --arch=armhf PACKAGEBUILD-23744712 Scanning for processes to kill in build PACKAGEBUILD-23744712