https://launchpad.net/ubuntu/+source/r-bioc-fmcsr/1.42.0+dfsg-1/+build/26439521 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos01-arm64-016 5.4.0-153-generic #170-Ubuntu SMP Fri Jun 16 13:46:00 UTC 2023 aarch64 Buildd toolchain package versions: launchpad-buildd_234~642~ubuntu20.04.1 python3-lpbuildd_234~642~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 21 Jul 11:45:58 ntpdate[1842]: adjust time server 10.211.37.1 offset -0.005450 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=mantic --arch=armhf PACKAGEBUILD-26439521 --image-type chroot /home/buildd/filecache-default/232c5f007faca678b94fe1cafd15f5ae1164056a Creating target for build PACKAGEBUILD-26439521 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=mantic --arch=armhf PACKAGEBUILD-26439521 Starting target for build PACKAGEBUILD-26439521 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=mantic --arch=armhf PACKAGEBUILD-26439521 'deb http://ftpmaster.internal/ubuntu mantic main universe' 'deb http://ftpmaster.internal/ubuntu mantic-security main universe' 'deb http://ftpmaster.internal/ubuntu mantic-updates main universe' 'deb http://ftpmaster.internal/ubuntu mantic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-26439521 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=mantic --arch=armhf PACKAGEBUILD-26439521 Updating target for build PACKAGEBUILD-26439521 Get:1 http://ftpmaster.internal/ubuntu mantic InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu mantic-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu mantic-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu mantic-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu mantic/main armhf Packages [1337 kB] Get:6 http://ftpmaster.internal/ubuntu mantic/main Translation-en [515 kB] Get:7 http://ftpmaster.internal/ubuntu mantic/universe armhf Packages [14.4 MB] Get:8 http://ftpmaster.internal/ubuntu mantic/universe Translation-en [5959 kB] Get:9 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf Packages [101 kB] Get:10 http://ftpmaster.internal/ubuntu mantic-proposed/main Translation-en [40.1 kB] Get:11 http://ftpmaster.internal/ubuntu mantic-proposed/universe armhf Packages [311 kB] Get:12 http://ftpmaster.internal/ubuntu mantic-proposed/universe Translation-en [131 kB] Fetched 23.4 MB in 4s (6337 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-12 libstdc++-12-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-13 g++-13 gcc-13 gcc-13-base libgcc-13-dev libproc2-0 libsframe1 libstdc++-13-dev systemd-dev The following packages will be upgraded: adduser advancecomp apt base-files bash binutils binutils-arm-linux-gnueabihf binutils-common bsdutils build-essential ca-certificates coreutils cpp cpp-12 dash debconf debianutils diffutils dpkg dpkg-dev e2fsprogs fakeroot findutils g++ g++-12 gcc gcc-12 gcc-12-base gpg gpg-agent gpgconf gpgv grep hostname init init-system-helpers libacl1 libapparmor1 libapt-pkg6.0 libargon2-1 libasan8 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libext2fs2 libfakeroot libfdisk1 libgcc-12-dev libgcc-s1 libgcrypt20 libgmp10 libgnutls30 libgomp1 libgssapi-krb5-2 libidn2-0 libip4tc2 libisl23 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 liblzma5 libmd0 libmount1 libmpfr6 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libperl5.36 libpng16-16 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libsqlite3-0 libss2 libssl3 libstdc++-12-dev libstdc++6 libsystemd-shared libsystemd0 libtasn1-6 libtinfo6 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev logsave lsb-base lto-disabled-list mawk mount ncurses-base ncurses-bin openssl perl perl-base perl-modules-5.36 pkgbinarymangler procps readline-common sed sensible-utils systemd systemd-sysv sysvinit-utils tar tzdata usrmerge util-linux util-linux-extra xz-utils zlib1g 142 upgraded, 9 newly installed, 0 to remove and 0 not upgraded. Need to get 273 MB of archives. After this operation, 498 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu mantic/main armhf libcrypt-dev armhf 1:4.4.35-1 [120 kB] Get:2 http://ftpmaster.internal/ubuntu mantic/main armhf libc6-dev armhf 2.37-0ubuntu2 [1339 kB] Get:3 http://ftpmaster.internal/ubuntu mantic/main armhf libc-dev-bin armhf 2.37-0ubuntu2 [18.9 kB] Get:4 http://ftpmaster.internal/ubuntu mantic/main armhf libcrypt1 armhf 1:4.4.35-1 [92.5 kB] Get:5 http://ftpmaster.internal/ubuntu mantic/main armhf linux-libc-dev armhf 6.3.0-7.7 [1503 kB] Get:6 http://ftpmaster.internal/ubuntu mantic/main armhf libc6 armhf 2.37-0ubuntu2 [2465 kB] Get:7 http://ftpmaster.internal/ubuntu mantic/main armhf libc-bin armhf 2.37-0ubuntu2 [533 kB] Get:8 http://ftpmaster.internal/ubuntu mantic/main armhf gcc-13-base armhf 13.1.0-8ubuntu1 [42.3 kB] Get:9 http://ftpmaster.internal/ubuntu mantic/main armhf libgcc-s1 armhf 13.1.0-8ubuntu1 [41.4 kB] Get:10 http://ftpmaster.internal/ubuntu mantic/main armhf base-files armhf 13ubuntu1 [73.7 kB] Get:11 http://ftpmaster.internal/ubuntu mantic/main armhf debianutils armhf 5.8-1 [102 kB] Get:12 http://ftpmaster.internal/ubuntu mantic/main armhf bash armhf 5.2.15-2ubuntu1 [671 kB] Get:13 http://ftpmaster.internal/ubuntu mantic/main armhf bsdutils armhf 1:2.38.1-5ubuntu2 [96.3 kB] Get:14 http://ftpmaster.internal/ubuntu mantic/main armhf coreutils armhf 9.1-1ubuntu2 [1290 kB] Get:15 http://ftpmaster.internal/ubuntu mantic/main armhf liblzma5 armhf 5.4.1-0.2 [109 kB] Get:16 http://ftpmaster.internal/ubuntu mantic/main armhf libzstd1 armhf 1.5.5+dfsg2-1ubuntu2 [264 kB] Get:17 http://ftpmaster.internal/ubuntu mantic/main armhf libgcrypt20 armhf 1.10.2-2ubuntu1 [455 kB] Get:18 http://ftpmaster.internal/ubuntu mantic/main armhf libstdc++6 armhf 13.1.0-8ubuntu1 [697 kB] Get:19 http://ftpmaster.internal/ubuntu mantic/main armhf libacl1 armhf 2.3.1-3 [15.1 kB] Get:20 http://ftpmaster.internal/ubuntu mantic/main armhf libapparmor1 armhf 3.0.8-1ubuntu4 [41.9 kB] Get:21 http://ftpmaster.internal/ubuntu mantic/main armhf libaudit-common all 1:3.1.1-1 [5426 B] Get:22 http://ftpmaster.internal/ubuntu mantic/main armhf libcap-ng0 armhf 0.8.3-1build2 [13.5 kB] Get:23 http://ftpmaster.internal/ubuntu mantic/main armhf libaudit1 armhf 1:3.1.1-1 [43.5 kB] Get:24 http://ftpmaster.internal/ubuntu mantic/main armhf libblkid1 armhf 2.38.1-5ubuntu2 [145 kB] Get:25 http://ftpmaster.internal/ubuntu mantic/main armhf libcap2 armhf 1:2.66-4ubuntu1 [25.2 kB] Get:26 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf libip4tc2 armhf 1.8.9-2ubuntu2 [20.2 kB] Get:27 http://ftpmaster.internal/ubuntu mantic/main armhf libperl5.36 armhf 5.36.0-7ubuntu1 [4025 kB] Get:28 http://ftpmaster.internal/ubuntu mantic/main armhf perl armhf 5.36.0-7ubuntu1 [235 kB] Get:29 http://ftpmaster.internal/ubuntu mantic/main armhf perl-base armhf 5.36.0-7ubuntu1 [1636 kB] Get:30 http://ftpmaster.internal/ubuntu mantic/main armhf perl-modules-5.36 all 5.36.0-7ubuntu1 [2984 kB] Get:31 http://ftpmaster.internal/ubuntu mantic/main armhf libdb5.3 armhf 5.3.28+dfsg2-1 [662 kB] Get:32 http://ftpmaster.internal/ubuntu mantic/main armhf zlib1g armhf 1:1.2.13.dfsg-1ubuntu4 [48.9 kB] Get:33 http://ftpmaster.internal/ubuntu mantic/main armhf debconf all 1.5.82 [125 kB] Get:34 http://ftpmaster.internal/ubuntu mantic/main armhf libssl3 armhf 3.0.9-1ubuntu1 [1571 kB] Get:35 http://ftpmaster.internal/ubuntu mantic/main armhf libkmod2 armhf 30+20221128-1ubuntu1 [41.9 kB] Get:36 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf libpcre2-8-0 armhf 10.42-2 [198 kB] Get:37 http://ftpmaster.internal/ubuntu mantic/main armhf libselinux1 armhf 3.5-1 [69.4 kB] Get:38 http://ftpmaster.internal/ubuntu mantic/main armhf libmount1 armhf 2.38.1-5ubuntu2 [152 kB] Get:39 http://ftpmaster.internal/ubuntu mantic/main armhf libpam0g armhf 1.5.2-6ubuntu1 [60.5 kB] Get:40 http://ftpmaster.internal/ubuntu mantic/main armhf libseccomp2 armhf 2.5.4-1ubuntu3 [48.8 kB] Get:41 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf systemd-sysv armhf 253.5-1ubuntu1 [11.5 kB] Get:42 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf systemd armhf 253.5-1ubuntu1 [3059 kB] Get:43 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf libsystemd-shared armhf 253.5-1ubuntu1 [1787 kB] Get:44 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf systemd-dev all 253.5-1ubuntu1 [78.5 kB] Get:45 http://ftpmaster.internal/ubuntu mantic/main armhf libargon2-1 armhf 0~20190702+dfsg-3 [20.9 kB] Get:46 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf libudev1 armhf 253.5-1ubuntu1 [151 kB] Get:47 http://ftpmaster.internal/ubuntu mantic/main armhf libdevmapper1.02.1 armhf 2:1.02.185-2ubuntu1 [135 kB] Get:48 http://ftpmaster.internal/ubuntu mantic/main armhf libuuid1 armhf 2.38.1-5ubuntu2 [31.9 kB] Get:49 http://ftpmaster.internal/ubuntu mantic/main armhf libcryptsetup12 armhf 2:2.6.1-4ubuntu1 [216 kB] Get:50 http://ftpmaster.internal/ubuntu mantic/main armhf libfdisk1 armhf 2.38.1-5ubuntu2 [186 kB] Get:51 http://ftpmaster.internal/ubuntu mantic/main armhf libp11-kit0 armhf 0.24.1-2ubuntu1 [212 kB] Get:52 http://ftpmaster.internal/ubuntu mantic/main armhf mount armhf 2.38.1-5ubuntu2 [125 kB] Get:53 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf libsystemd0 armhf 253.5-1ubuntu1 [380 kB] Get:54 http://ftpmaster.internal/ubuntu mantic/main armhf libapt-pkg6.0 armhf 2.7.2 [925 kB] Get:55 http://ftpmaster.internal/ubuntu mantic/main armhf tar armhf 1.34+dfsg-1.2ubuntu1 [270 kB] Get:56 http://ftpmaster.internal/ubuntu mantic/main armhf dpkg armhf 1.21.22ubuntu1 [1348 kB] Get:57 http://ftpmaster.internal/ubuntu mantic/main armhf dash armhf 0.5.12-2ubuntu1 [79.0 kB] Get:58 http://ftpmaster.internal/ubuntu mantic/main armhf diffutils armhf 1:3.8-4 [167 kB] Get:59 http://ftpmaster.internal/ubuntu mantic/main armhf findutils armhf 4.9.0-5 [294 kB] Get:60 http://ftpmaster.internal/ubuntu mantic/main armhf grep armhf 3.11-1 [157 kB] Get:61 http://ftpmaster.internal/ubuntu mantic/main armhf hostname armhf 3.23+nmu1ubuntu1 [10.2 kB] Get:62 http://ftpmaster.internal/ubuntu mantic/main armhf libncurses6 armhf 6.4+20230625-1 [87.7 kB] Get:63 http://ftpmaster.internal/ubuntu mantic/main armhf libncursesw6 armhf 6.4+20230625-1 [119 kB] Get:64 http://ftpmaster.internal/ubuntu mantic/main armhf libtinfo6 armhf 6.4+20230625-1 [90.2 kB] Get:65 http://ftpmaster.internal/ubuntu mantic/main armhf ncurses-bin armhf 6.4+20230625-1 [175 kB] Get:66 http://ftpmaster.internal/ubuntu mantic/main armhf sed armhf 4.9-1 [191 kB] Get:67 http://ftpmaster.internal/ubuntu mantic/main armhf libsmartcols1 armhf 2.38.1-5ubuntu2 [103 kB] Get:68 http://ftpmaster.internal/ubuntu mantic/main armhf util-linux-extra armhf 2.38.1-5ubuntu2 [98.3 kB] Get:69 http://ftpmaster.internal/ubuntu mantic/main armhf util-linux armhf 2.38.1-5ubuntu2 [1160 kB] Get:70 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf init-system-helpers all 1.65.2ubuntu1 [38.7 kB] Get:71 http://ftpmaster.internal/ubuntu mantic/main armhf ncurses-base all 6.4+20230625-1 [24.1 kB] Get:72 http://ftpmaster.internal/ubuntu mantic/main armhf sysvinit-utils armhf 3.06-4ubuntu1 [32.5 kB] Get:73 http://ftpmaster.internal/ubuntu mantic/main armhf lsb-base all 11.6 [4606 B] Get:74 http://ftpmaster.internal/ubuntu mantic/main armhf adduser all 3.137ubuntu1 [101 kB] Get:75 http://ftpmaster.internal/ubuntu mantic/main armhf gpgv armhf 2.2.40-1.1ubuntu1 [195 kB] Get:76 http://ftpmaster.internal/ubuntu mantic/main armhf libgmp10 armhf 2:6.2.1+dfsg1-1.1ubuntu2 [205 kB] Get:77 http://ftpmaster.internal/ubuntu mantic/main armhf libidn2-0 armhf 2.3.4-1 [114 kB] Get:78 http://ftpmaster.internal/ubuntu mantic/main armhf libtasn1-6 armhf 4.19.0-3 [36.8 kB] Get:79 http://ftpmaster.internal/ubuntu mantic/main armhf libgnutls30 armhf 3.7.9-2ubuntu1 [949 kB] Get:80 http://ftpmaster.internal/ubuntu mantic/main armhf apt armhf 2.7.2 [1343 kB] Get:81 http://ftpmaster.internal/ubuntu mantic/main armhf libpam-modules-bin armhf 1.5.2-6ubuntu1 [42.5 kB] Get:82 http://ftpmaster.internal/ubuntu mantic/main armhf libpam-modules armhf 1.5.2-6ubuntu1 [265 kB] Get:83 http://ftpmaster.internal/ubuntu mantic/main armhf logsave armhf 1.47.0-1ubuntu2 [21.2 kB] Get:84 http://ftpmaster.internal/ubuntu mantic/main armhf libext2fs2 armhf 1.47.0-1ubuntu2 [200 kB] Get:85 http://ftpmaster.internal/ubuntu mantic/main armhf e2fsprogs armhf 1.47.0-1ubuntu2 [572 kB] Get:86 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf init armhf 1.65.2ubuntu1 [5508 B] Get:87 http://ftpmaster.internal/ubuntu mantic/main armhf libattr1 armhf 1:2.5.1-4 [11.2 kB] Get:88 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf libdebconfclient0 armhf 0.270ubuntu1 [10.6 kB] Get:89 http://ftpmaster.internal/ubuntu mantic/main armhf libmd0 armhf 1.1.0-1 [23.1 kB] Get:90 http://ftpmaster.internal/ubuntu mantic/main armhf libpam-runtime all 1.5.2-6ubuntu1 [41.5 kB] Get:91 http://ftpmaster.internal/ubuntu mantic/main armhf libsemanage-common all 3.5-1 [9890 B] Get:92 http://ftpmaster.internal/ubuntu mantic/main armhf libsepol2 armhf 3.5-1 [262 kB] Get:93 http://ftpmaster.internal/ubuntu mantic/main armhf libsemanage2 armhf 3.5-1 [83.9 kB] Get:94 http://ftpmaster.internal/ubuntu mantic/main armhf usrmerge all 35ubuntu1 [58.2 kB] Get:95 http://ftpmaster.internal/ubuntu mantic/main armhf libcom-err2 armhf 1.47.0-1ubuntu2 [21.2 kB] Get:96 http://ftpmaster.internal/ubuntu mantic/main armhf libproc2-0 armhf 2:4.0.3-1ubuntu1 [46.4 kB] Get:97 http://ftpmaster.internal/ubuntu mantic/main armhf libss2 armhf 1.47.0-1ubuntu2 [14.5 kB] Get:98 http://ftpmaster.internal/ubuntu mantic/main armhf mawk armhf 1.3.4.20230525-1 [102 kB] Get:99 http://ftpmaster.internal/ubuntu mantic/main armhf procps armhf 2:4.0.3-1ubuntu1 [599 kB] Get:100 http://ftpmaster.internal/ubuntu mantic/main armhf sensible-utils all 0.0.20 [19.6 kB] Get:101 http://ftpmaster.internal/ubuntu mantic/main armhf openssl armhf 3.0.9-1ubuntu1 [1159 kB] Get:102 http://ftpmaster.internal/ubuntu mantic/main armhf ca-certificates all 20230311ubuntu1 [152 kB] Get:103 http://ftpmaster.internal/ubuntu mantic/main armhf libgssapi-krb5-2 armhf 1.20.1-2 [118 kB] Get:104 http://ftpmaster.internal/ubuntu mantic/main armhf libkrb5-3 armhf 1.20.1-2 [320 kB] Get:105 http://ftpmaster.internal/ubuntu mantic/main armhf libkrb5support0 armhf 1.20.1-2 [30.9 kB] Get:106 http://ftpmaster.internal/ubuntu mantic/main armhf libk5crypto3 armhf 1.20.1-2 [78.3 kB] Get:107 http://ftpmaster.internal/ubuntu mantic/main armhf readline-common all 8.2-1.3 [55.7 kB] Get:108 http://ftpmaster.internal/ubuntu mantic/main armhf libreadline8 armhf 8.2-1.3 [128 kB] Get:109 http://ftpmaster.internal/ubuntu mantic/main armhf libsqlite3-0 armhf 3.42.0-1 [578 kB] Get:110 http://ftpmaster.internal/ubuntu mantic/main armhf tzdata all 2023c-7ubuntu1 [272 kB] Get:111 http://ftpmaster.internal/ubuntu mantic/main armhf libpng16-16 armhf 1.6.40-1 [166 kB] Get:112 http://ftpmaster.internal/ubuntu mantic/main armhf xz-utils armhf 5.4.1-0.2 [269 kB] Get:113 http://ftpmaster.internal/ubuntu mantic/main armhf advancecomp armhf 2.5-1 [192 kB] Get:114 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf libctf0 armhf 2.40.90.20230720-1ubuntu1 [86.9 kB] Get:115 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf libctf-nobfd0 armhf 2.40.90.20230720-1ubuntu1 [87.2 kB] Get:116 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf binutils-arm-linux-gnueabihf armhf 2.40.90.20230720-1ubuntu1 [2960 kB] Get:117 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf libbinutils armhf 2.40.90.20230720-1ubuntu1 [457 kB] Get:118 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf binutils armhf 2.40.90.20230720-1ubuntu1 [3090 B] Get:119 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf binutils-common armhf 2.40.90.20230720-1ubuntu1 [228 kB] Get:120 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf libsframe1 armhf 2.40.90.20230720-1ubuntu1 [12.8 kB] Get:121 http://ftpmaster.internal/ubuntu mantic/main armhf libisl23 armhf 0.26-3 [595 kB] Get:122 http://ftpmaster.internal/ubuntu mantic/main armhf libmpfr6 armhf 4.2.0-1 [228 kB] Get:123 http://ftpmaster.internal/ubuntu mantic/main armhf cpp-13 armhf 13.1.0-8ubuntu1 [55.7 MB] Get:124 http://ftpmaster.internal/ubuntu mantic/main armhf g++ armhf 4:13.1.0-4ubuntu2 [1110 B] Get:125 http://ftpmaster.internal/ubuntu mantic/main armhf gcc armhf 4:13.1.0-4ubuntu2 [5198 B] Get:126 http://ftpmaster.internal/ubuntu mantic/main armhf cpp armhf 4:13.1.0-4ubuntu2 [28.9 kB] Get:127 http://ftpmaster.internal/ubuntu mantic/main armhf libcc1-0 armhf 13.1.0-8ubuntu1 [43.7 kB] Get:128 http://ftpmaster.internal/ubuntu mantic/main armhf libgomp1 armhf 13.1.0-8ubuntu1 [119 kB] Get:129 http://ftpmaster.internal/ubuntu mantic/main armhf libatomic1 armhf 13.1.0-8ubuntu1 [7764 B] Get:130 http://ftpmaster.internal/ubuntu mantic/main armhf libasan8 armhf 13.1.0-8ubuntu1 [2741 kB] Get:131 http://ftpmaster.internal/ubuntu mantic/main armhf libubsan1 armhf 13.1.0-8ubuntu1 [1072 kB] Get:132 http://ftpmaster.internal/ubuntu mantic/main armhf libgcc-13-dev armhf 13.1.0-8ubuntu1 [901 kB] Get:133 http://ftpmaster.internal/ubuntu mantic/main armhf gcc-13 armhf 13.1.0-8ubuntu1 [62.9 MB] Get:134 http://ftpmaster.internal/ubuntu mantic/main armhf libstdc++-13-dev armhf 13.1.0-8ubuntu1 [2441 kB] Get:135 http://ftpmaster.internal/ubuntu mantic/main armhf g++-13 armhf 13.1.0-8ubuntu1 [60.4 MB] Get:136 http://ftpmaster.internal/ubuntu mantic/main armhf dpkg-dev all 1.21.22ubuntu1 [1118 kB] Get:137 http://ftpmaster.internal/ubuntu mantic/main armhf libdpkg-perl all 1.21.22ubuntu1 [247 kB] Get:138 http://ftpmaster.internal/ubuntu mantic/main armhf lto-disabled-list all 41 [12.4 kB] Get:139 http://ftpmaster.internal/ubuntu mantic/main armhf build-essential armhf 12.10ubuntu1 [4928 B] Get:140 http://ftpmaster.internal/ubuntu mantic/universe armhf g++-12 armhf 12.3.0-6ubuntu1 [9316 kB] Get:141 http://ftpmaster.internal/ubuntu mantic/universe armhf gcc-12 armhf 12.3.0-6ubuntu1 [16.2 MB] Get:142 http://ftpmaster.internal/ubuntu mantic/main armhf libstdc++-12-dev armhf 12.3.0-6ubuntu1 [2251 kB] Get:143 http://ftpmaster.internal/ubuntu mantic/main armhf libgcc-12-dev armhf 12.3.0-6ubuntu1 [857 kB] Get:144 http://ftpmaster.internal/ubuntu mantic/universe armhf cpp-12 armhf 12.3.0-6ubuntu1 [8156 kB] Get:145 http://ftpmaster.internal/ubuntu mantic/main armhf gcc-12-base armhf 12.3.0-6ubuntu1 [43.0 kB] Get:146 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf libfakeroot armhf 1.32.1-1 [27.3 kB] Get:147 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf fakeroot armhf 1.32.1-1 [61.6 kB] Get:148 http://ftpmaster.internal/ubuntu mantic/main armhf gpg armhf 2.2.40-1.1ubuntu1 [482 kB] Get:149 http://ftpmaster.internal/ubuntu mantic/main armhf gpgconf armhf 2.2.40-1.1ubuntu1 [120 kB] Get:150 http://ftpmaster.internal/ubuntu mantic/main armhf gpg-agent armhf 2.2.40-1.1ubuntu1 [236 kB] Get:151 http://ftpmaster.internal/ubuntu mantic/main armhf pkgbinarymangler all 153 [16.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 273 MB in 12s (22.3 MB/s) (Reading database ... 12825 files and directories currently installed.) 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RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-26439521 armhf mantic-proposed -c chroot:build-PACKAGEBUILD-26439521 --arch=armhf --dist=mantic-proposed --nolog r-bioc-fmcsr_1.42.0+dfsg-1.dsc Initiating build PACKAGEBUILD-26439521 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-153-generic #170-Ubuntu SMP Fri Jun 16 13:46:00 UTC 2023 armv7l sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos01-arm64-016.buildd +==============================================================================+ | r-bioc-fmcsr 1.42.0+dfsg-1 (armhf) Fri, 21 Jul 2023 11:46:41 +0000 | +==============================================================================+ Package: r-bioc-fmcsr Version: 1.42.0+dfsg-1 Source Version: 1.42.0+dfsg-1 Distribution: mantic-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-26439521/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-fmcsr-7qf2XR/resolver-G9G7Ab' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-bioc-fmcsr_1.42.0+dfsg-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/r-bioc-fmcsr-7qf2XR/r-bioc-fmcsr-1.42.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-fmcsr-7qf2XR' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-chemminer, r-cran-runit, r-bioc-biocgenerics, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-chemminer, r-cran-runit, r-bioc-biocgenerics, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [407 B] Get:5 copy:/<>/apt_archive ./ Packages [488 B] Fetched 1852 B in 0s (105 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-12 libstdc++-12-dev Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils dctrl-tools debhelper debugedit dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax gettext gettext-base gfortran gfortran-13 groff-base icu-devtools intltool-debian javascript-common libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libboost1.81-dev libbrotli1 libbsd0 libbz2-dev libcairo-gobject2 libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libclone-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdw1 libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran-13-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu72 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 libldap2 liblerc4 liblua5.3-0 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpsl5 libreadline-dev librsvg2-2 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff6 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libuv1 libvariable-magic-perl libwebp7 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 libyaml-0-2 m4 man-db node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data pkg-config pkgconf pkgconf-bin po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-chemminer r-cran-base64enc r-cran-bh r-cran-bitops r-cran-bslib r-cran-cachem r-cran-cli r-cran-colorspace r-cran-commonmark r-cran-crayon r-cran-crosstalk r-cran-dbi r-cran-digest r-cran-dt r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fontawesome r-cran-fs r-cran-ggplot2 r-cran-glue r-cran-gridextra r-cran-gtable r-cran-highr r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-png r-cran-promises r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsvg r-cran-runit r-cran-sass r-cran-scales r-cran-shiny r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-tibble r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml shared-mime-info ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc debtags dh-make postgresql-client-common gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc gfortran-13-doc libcoarrays-dev groff apache2 | lighttpd | httpd liblapack-doc libboost1.81-doc libboost-atomic1.81-dev libboost-chrono1.81-dev libboost-container1.81-dev libboost-context1.81-dev libboost-contract1.81-dev libboost-coroutine1.81-dev libboost-date-time1.81-dev libboost-exception1.81-dev libboost-fiber1.81-dev libboost-filesystem1.81-dev libboost-graph1.81-dev libboost-graph-parallel1.81-dev libboost-iostreams1.81-dev libboost-locale1.81-dev libboost-log1.81-dev libboost-math1.81-dev libboost-mpi1.81-dev libboost-mpi-python1.81-dev libboost-numpy1.81-dev libboost-program-options1.81-dev libboost-python1.81-dev libboost-random1.81-dev libboost-regex1.81-dev libboost-serialization1.81-dev libboost-stacktrace1.81-dev libboost-system1.81-dev libboost-test1.81-dev libboost-thread1.81-dev libboost-timer1.81-dev libboost-type-erasure1.81-dev libboost-wave1.81-dev libboost1.81-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.81-dev low-memory-monitor libio-compress-brotli-perl icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix libjs-mathjax-doc liblzma-doc ncurses-doc libscalar-number-perl readline-doc librsvg2-bin tcl8.6 tk8.6 libtool-doc gcj-jdk libbusiness-isbn-perl libregexp-ipv6-perl libwww-perl libcurl4-gnutls-dev m4-doc apparmor less www-browser nodejs texlive-latex-recommended texlive-xetex texlive-luatex pandoc-citeproc texlive-latex-extra context wkhtmltopdf ghc php python ruby libjs-katex citation-style-language-styles libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo r-bioc-biobase r-bioc-s4vectors r-bioc-iranges r-bioc-genomicranges r-bioc-delayedarray r-bioc-biostrings r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-rsqlite r-cran-scatterplot3d r-cran-gplots r-bioc-fmcsr r-cran-snow r-cran-rpostgresql r-bioc-biocstyle r-cran-biocmanager r-cran-bibtex r-cran-callr r-cran-covr r-cran-processx r-cran-ps r-cran-rprojroot r-cran-rstudioapi r-cran-whoami r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-dplyr r-cran-jpeg r-cran-viridis r-cran-curl r-cran-testthat r-cran-xml2 r-cran-rmysql r-cran-future r-cran-testit r-cran-unitizer r-cran-spelling r-cran-profvis r-cran-rgeos r-cran-forcats r-cran-r.utils r-cran-waldo r-cran-markdown r-cran-cairo r-cran-ragg r-cran-magick r-cran-sf r-cran-httr r-cran-r.rsp r-cran-lintr r-cran-tidyverse r-cran-getopt r-cran-bit64 r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-survival r-cran-units r-cran-vdiffr r-cran-purrr r-cran-roxygen2 r-cran-inline r-cran-xml r-cran-usethis r-cran-downlit r-cran-svglite r-cran-dichromat r-cran-bench r-cran-blob r-cran-brio r-cran-here r-cran-hms r-cran-pkgbuild r-cran-pkgload r-cran-tidyr r-cran-pkgdown r-cran-zeallot r-cran-codetools r-cran-remotes r-cran-plm r-cran-zoo Recommended packages: devscripts cme git-buildpackage curl | wget | lynx bzip2-doc libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl libgdk-pixbuf2.0-bin libglib2.0-data xdg-user-dirs node-jquery libldap-common libdevel-partialdump-perl libpng-tools publicsuffix librsvg2-common libsasl2-modules libltdl-dev libmail-sendmail-perl r-recommended r-doc-html r-cran-thematic r-cran-testthat r-cran-curl r-cran-mockery r-cran-covr r-cran-dplyr r-cran-ragg r-cran-hexbin r-cran-hmisc r-cran-interp r-cran-mapproj r-cran-maps r-cran-maptools r-cran-multcomp r-cran-quantreg r-cran-rpart r-cran-sf r-cran-svglite r-cran-vdiffr r-cran-xml2 r-cran-testit r-cran-markdown r-cran-sp r-cran-codetools r-cran-formatr r-cran-gridsvg r-cran-jpeg r-cran-magick r-cran-reticulate r-cran-rgl r-cran-tikzdevice r-cran-webshot r-cran-rstudioapi node-highlight.js r-cran-lubridate r-cran-future r-cran-tufte r-cran-dygraphs r-cran-rsconnect r-cran-bit64 r-cran-hms r-cran-data.table r-cran-rsqlite r-cran-mockr r-cran-formattable r-cran-generics r-cran-waldo libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils dctrl-tools debhelper debugedit dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax gettext gettext-base gfortran gfortran-13 groff-base icu-devtools intltool-debian javascript-common libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libboost1.81-dev libbrotli1 libbsd0 libbz2-dev libcairo-gobject2 libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libclone-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdw1 libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran-13-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu72 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 libldap2 liblerc4 liblua5.3-0 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpsl5 libreadline-dev librsvg2-2 librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff6 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libuv1 libvariable-magic-perl libwebp7 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 libyaml-0-2 m4 man-db node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data pkg-config pkgconf pkgconf-bin po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-chemminer r-cran-base64enc r-cran-bh r-cran-bitops r-cran-bslib r-cran-cachem r-cran-cli r-cran-colorspace r-cran-commonmark r-cran-crayon r-cran-crosstalk r-cran-dbi r-cran-digest r-cran-dt r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fontawesome r-cran-fs r-cran-ggplot2 r-cran-glue r-cran-gridextra r-cran-gtable r-cran-highr r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-png r-cran-promises r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsvg r-cran-runit r-cran-sass r-cran-scales r-cran-shiny r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-tibble r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml sbuild-build-depends-main-dummy shared-mime-info ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 282 newly installed, 0 to remove and 0 not upgraded. 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libpixman-1-0 armhf 0.42.2-1 [184 kB] Get:64 http://ftpmaster.internal/ubuntu mantic/main armhf libxcb-render0 armhf 1.15-1 [15.2 kB] Get:65 http://ftpmaster.internal/ubuntu mantic/main armhf libxcb-shm0 armhf 1.15-1 [5852 B] Get:66 http://ftpmaster.internal/ubuntu mantic/main armhf libxrender1 armhf 1:0.9.10-1.1 [16.5 kB] Get:67 http://ftpmaster.internal/ubuntu mantic/main armhf libcairo2 armhf 1.17.8-2 [472 kB] Get:68 http://ftpmaster.internal/ubuntu mantic/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-1 [18.8 kB] Get:69 http://ftpmaster.internal/ubuntu mantic/main armhf libsasl2-2 armhf 2.1.28+dfsg1-1 [51.4 kB] Get:70 http://ftpmaster.internal/ubuntu mantic/main armhf libldap2 armhf 2.6.4+dfsg-1~exp1ubuntu1 [170 kB] Get:71 http://ftpmaster.internal/ubuntu mantic/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2build4 [52.8 kB] Get:72 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf libssh-4 armhf 0.10.5-2 [166 kB] Get:73 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf libcurl4 armhf 7.88.1-10ubuntu2 [266 kB] Get:74 http://ftpmaster.internal/ubuntu mantic/main armhf libjpeg-turbo8 armhf 2.1.5-2ubuntu1 [123 kB] Get:75 http://ftpmaster.internal/ubuntu mantic/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] Get:76 http://ftpmaster.internal/ubuntu mantic/main armhf libgfortran5 armhf 13.1.0-8ubuntu1 [300 kB] Get:77 http://ftpmaster.internal/ubuntu mantic/main armhf liblapack3 armhf 3.11.0-2 [1994 kB] Get:78 http://ftpmaster.internal/ubuntu mantic/main armhf fontconfig armhf 2.14.1-4ubuntu1 [184 kB] Get:79 http://ftpmaster.internal/ubuntu mantic/main armhf libgraphite2-3 armhf 1.3.14-1build2 [65.2 kB] Get:80 http://ftpmaster.internal/ubuntu mantic/main armhf libharfbuzz0b armhf 8.0.1-1 [433 kB] Get:81 http://ftpmaster.internal/ubuntu mantic/main armhf libthai-data all 0.1.29-1build1 [162 kB] Get:82 http://ftpmaster.internal/ubuntu mantic/main armhf libdatrie1 armhf 0.2.13-2 [16.8 kB] Get:83 http://ftpmaster.internal/ubuntu mantic/main armhf libthai0 armhf 0.1.29-1build1 [15.8 kB] Get:84 http://ftpmaster.internal/ubuntu mantic/main armhf libpango-1.0-0 armhf 1.50.14+ds-1 [206 kB] Get:85 http://ftpmaster.internal/ubuntu mantic/main armhf libpangoft2-1.0-0 armhf 1.50.14+ds-1 [36.3 kB] Get:86 http://ftpmaster.internal/ubuntu mantic/main armhf libpangocairo-1.0-0 armhf 1.50.14+ds-1 [25.4 kB] Get:87 http://ftpmaster.internal/ubuntu mantic/main armhf libtcl8.6 armhf 8.6.13+dfsg-2 [902 kB] Get:88 http://ftpmaster.internal/ubuntu mantic/main armhf libdeflate0 armhf 1.15-1 [39.6 kB] Get:89 http://ftpmaster.internal/ubuntu mantic/main armhf libjbig0 armhf 2.1-6.1ubuntu1 [24.9 kB] Get:90 http://ftpmaster.internal/ubuntu mantic/main armhf liblerc4 armhf 4.0.0+ds-2ubuntu2 [151 kB] Get:91 http://ftpmaster.internal/ubuntu mantic/main armhf libwebp7 armhf 1.2.4-0.2 [167 kB] Get:92 http://ftpmaster.internal/ubuntu mantic/main armhf libtiff6 armhf 4.5.0-6ubuntu1 [176 kB] Get:93 http://ftpmaster.internal/ubuntu mantic/main armhf libxft2 armhf 2.3.6-1 [36.8 kB] Get:94 http://ftpmaster.internal/ubuntu mantic/main armhf x11-common all 1:7.7+23ubuntu2 [23.4 kB] Get:95 http://ftpmaster.internal/ubuntu mantic/main armhf libxss1 armhf 1:1.2.3-1build2 [7580 B] Get:96 http://ftpmaster.internal/ubuntu mantic/main armhf libtk8.6 armhf 8.6.13-2 [680 kB] Get:97 http://ftpmaster.internal/ubuntu mantic/main armhf libice6 armhf 2:1.0.10-1build2 [36.4 kB] Get:98 http://ftpmaster.internal/ubuntu mantic/main armhf libsm6 armhf 2:1.2.3-1build2 [15.1 kB] Get:99 http://ftpmaster.internal/ubuntu mantic/main armhf libxt6 armhf 1:1.2.1-1.1 [142 kB] Get:100 http://ftpmaster.internal/ubuntu mantic/universe armhf r-base-core armhf 4.3.1-3 [26.6 MB] Get:101 http://ftpmaster.internal/ubuntu mantic/main armhf libgfortran-13-dev armhf 13.1.0-8ubuntu1 [359 kB] Get:102 http://ftpmaster.internal/ubuntu mantic/main armhf gfortran-13 armhf 13.1.0-8ubuntu1 [57.4 MB] Get:103 http://ftpmaster.internal/ubuntu mantic/main armhf gfortran armhf 4:13.1.0-4ubuntu2 [1174 B] Get:104 http://ftpmaster.internal/ubuntu mantic/main armhf libblas-dev armhf 3.11.0-2 [129 kB] Get:105 http://ftpmaster.internal/ubuntu mantic/main armhf liblapack-dev armhf 3.11.0-2 [2060 kB] Get:106 http://ftpmaster.internal/ubuntu mantic/main armhf libncurses-dev armhf 6.4+20230625-1 [343 kB] Get:107 http://ftpmaster.internal/ubuntu mantic/main armhf libreadline-dev armhf 8.2-1.3 [152 kB] Get:108 http://ftpmaster.internal/ubuntu mantic/main armhf libjpeg-turbo8-dev armhf 2.1.5-2ubuntu1 [263 kB] Get:109 http://ftpmaster.internal/ubuntu mantic/main armhf libjpeg8-dev armhf 8c-2ubuntu11 [1484 B] Get:110 http://ftpmaster.internal/ubuntu mantic/main armhf libjpeg-dev armhf 8c-2ubuntu11 [1482 B] Get:111 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf libpcre2-16-0 armhf 10.42-2 [180 kB] Get:112 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf libpcre2-32-0 armhf 10.42-2 [171 kB] Get:113 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf libpcre2-posix3 armhf 10.42-2 [6100 B] Get:114 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf libpcre2-dev armhf 10.42-2 [661 kB] Get:115 http://ftpmaster.internal/ubuntu mantic/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1ubuntu4 [880 kB] Get:116 http://ftpmaster.internal/ubuntu mantic/main armhf libpng-dev armhf 1.6.40-1 [248 kB] Get:117 http://ftpmaster.internal/ubuntu mantic/main armhf libbz2-dev armhf 1.0.8-5build1 [29.8 kB] Get:118 http://ftpmaster.internal/ubuntu mantic/main armhf liblzma-dev armhf 5.4.1-0.2 [165 kB] Get:119 http://ftpmaster.internal/ubuntu mantic/main armhf icu-devtools armhf 72.1-3ubuntu2 [196 kB] Get:120 http://ftpmaster.internal/ubuntu mantic/main armhf libicu-dev armhf 72.1-3ubuntu2 [11.6 MB] Get:121 http://ftpmaster.internal/ubuntu mantic/main armhf libpkgconf3 armhf 1.8.1-2 [26.3 kB] Get:122 http://ftpmaster.internal/ubuntu mantic/main armhf pkgconf-bin armhf 1.8.1-2 [20.6 kB] Get:123 http://ftpmaster.internal/ubuntu mantic/main armhf pkgconf armhf 1.8.1-2 [16.7 kB] Get:124 http://ftpmaster.internal/ubuntu mantic/main armhf pkg-config armhf 1.8.1-2 [7170 B] Get:125 http://ftpmaster.internal/ubuntu mantic/universe armhf r-base-dev all 4.3.1-3 [4332 B] Get:126 http://ftpmaster.internal/ubuntu mantic/main armhf libfile-which-perl all 1.27-2 [12.5 kB] Get:127 http://ftpmaster.internal/ubuntu mantic/universe armhf libswitch-perl all 2.17-3 [18.9 kB] Get:128 http://ftpmaster.internal/ubuntu mantic/main armhf libclone-perl armhf 0.46-1 [10.0 kB] Get:129 http://ftpmaster.internal/ubuntu mantic/main armhf libencode-locale-perl all 1.05-3 [11.6 kB] Get:130 http://ftpmaster.internal/ubuntu mantic/main armhf libtimedate-perl all 2.3300-2 [34.0 kB] Get:131 http://ftpmaster.internal/ubuntu mantic/main armhf libhttp-date-perl all 6.05-2 [9946 B] Get:132 http://ftpmaster.internal/ubuntu mantic/main armhf libio-html-perl all 1.004-3 [15.9 kB] Get:133 http://ftpmaster.internal/ubuntu mantic/main armhf liblwp-mediatypes-perl all 6.04-2 [20.1 kB] Get:134 http://ftpmaster.internal/ubuntu mantic/main armhf liburi-perl all 5.19-2 [81.0 kB] Get:135 http://ftpmaster.internal/ubuntu mantic/main armhf libhttp-message-perl all 6.44-2ubuntu1 [78.0 kB] Get:136 http://ftpmaster.internal/ubuntu mantic/main armhf libparams-util-perl armhf 1.102-2 [20.5 kB] Get:137 http://ftpmaster.internal/ubuntu mantic/main armhf libsub-install-perl all 0.929-1 [9764 B] Get:138 http://ftpmaster.internal/ubuntu mantic/main armhf libdata-optlist-perl all 0.114-1 [9708 B] Get:139 http://ftpmaster.internal/ubuntu mantic/main armhf libb-hooks-op-check-perl armhf 0.22-2build1 [9160 B] Get:140 http://ftpmaster.internal/ubuntu mantic/main armhf libdynaloader-functions-perl all 0.003-3 [12.1 kB] Get:141 http://ftpmaster.internal/ubuntu mantic/main armhf libdevel-callchecker-perl armhf 0.008-2 [13.6 kB] Get:142 http://ftpmaster.internal/ubuntu mantic/main armhf libparams-classify-perl armhf 0.015-2build2 [19.4 kB] Get:143 http://ftpmaster.internal/ubuntu mantic/main armhf libmodule-runtime-perl all 0.016-2 [16.4 kB] Get:144 http://ftpmaster.internal/ubuntu mantic/main armhf libtry-tiny-perl all 0.31-2 [20.8 kB] Get:145 http://ftpmaster.internal/ubuntu mantic/main armhf libmodule-implementation-perl all 0.09-2 [12.0 kB] Get:146 http://ftpmaster.internal/ubuntu mantic/main armhf libpackage-stash-perl all 0.40-1 [19.5 kB] Get:147 http://ftpmaster.internal/ubuntu mantic/universe armhf libclass-load-perl all 0.25-2 [12.7 kB] Get:148 http://ftpmaster.internal/ubuntu mantic/universe armhf libclass-load-xs-perl armhf 0.10-2build1 [13.1 kB] Get:149 http://ftpmaster.internal/ubuntu mantic/main armhf libsub-exporter-progressive-perl all 0.001013-3 [6718 B] Get:150 http://ftpmaster.internal/ubuntu mantic/universe armhf libdevel-globaldestruction-perl all 0.14-4 [6114 B] Get:151 http://ftpmaster.internal/ubuntu mantic/universe armhf libalgorithm-c3-perl all 0.11-2 [10.2 kB] Get:152 http://ftpmaster.internal/ubuntu mantic/universe armhf libclass-c3-perl all 0.35-2 [18.4 kB] Get:153 http://ftpmaster.internal/ubuntu mantic/universe armhf libmro-compat-perl all 0.15-2 [10.1 kB] Get:154 http://ftpmaster.internal/ubuntu mantic/universe armhf libdevel-overloadinfo-perl all 0.007-1 [7422 B] Get:155 http://ftpmaster.internal/ubuntu mantic/main armhf libdevel-stacktrace-perl all 2.0400-2 [22.2 kB] Get:156 http://ftpmaster.internal/ubuntu mantic/main armhf libsub-exporter-perl all 0.989-1 [48.6 kB] Get:157 http://ftpmaster.internal/ubuntu mantic/universe armhf libeval-closure-perl all 0.14-3 [10.1 kB] Get:158 http://ftpmaster.internal/ubuntu mantic/universe armhf libdist-checkconflicts-perl all 0.11-2 [9942 B] Get:159 http://ftpmaster.internal/ubuntu mantic/universe armhf libmodule-runtime-conflicts-perl all 0.003-2 [6956 B] Get:160 http://ftpmaster.internal/ubuntu mantic/universe armhf libpackage-deprecationmanager-perl all 0.18-1 [16.7 kB] Get:161 http://ftpmaster.internal/ubuntu mantic/main armhf libpackage-stash-xs-perl armhf 0.30-1build1 [17.2 kB] Get:162 http://ftpmaster.internal/ubuntu mantic/universe armhf libmoose-perl armhf 2.2203-1 [747 kB] Get:163 http://ftpmaster.internal/ubuntu mantic/main armhf libvariable-magic-perl armhf 0.63-1 [32.2 kB] Get:164 http://ftpmaster.internal/ubuntu mantic/main armhf libb-hooks-endofscope-perl all 0.26-1 [17.8 kB] Get:165 http://ftpmaster.internal/ubuntu mantic/main armhf libsub-identify-perl armhf 0.14-3 [9386 B] Get:166 http://ftpmaster.internal/ubuntu mantic/main armhf libsub-name-perl armhf 0.27-1 [10.3 kB] Get:167 http://ftpmaster.internal/ubuntu mantic/main armhf libnamespace-clean-perl all 0.27-2 [14.0 kB] Get:168 http://ftpmaster.internal/ubuntu mantic-proposed/main armhf libcurl3-gnutls armhf 7.88.1-10ubuntu2 [261 kB] Get:169 http://ftpmaster.internal/ubuntu mantic/universe armhf libwww-curl-perl armhf 4.17-10 [54.7 kB] Get:170 http://ftpmaster.internal/ubuntu mantic/universe armhf libwww-curl-simple-perl all 0.100191-3 [11.2 kB] Get:171 http://ftpmaster.internal/ubuntu mantic/universe armhf dh-r all 20230707ubuntu1 [39.1 kB] Get:172 http://ftpmaster.internal/ubuntu mantic/main armhf fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] Get:173 http://ftpmaster.internal/ubuntu mantic/universe armhf fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] Get:174 http://ftpmaster.internal/ubuntu mantic/main armhf fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] Get:175 http://ftpmaster.internal/ubuntu mantic/main armhf javascript-common all 11+nmu1 [5936 B] Get:176 http://ftpmaster.internal/ubuntu mantic-proposed/universe armhf libboost1.81-dev armhf 1.81.0-6 [10.5 MB] Get:177 http://ftpmaster.internal/ubuntu mantic/main armhf libcairo-gobject2 armhf 1.17.8-2 [125 kB] Get:178 http://ftpmaster.internal/ubuntu mantic/main armhf libgdk-pixbuf2.0-common all 2.42.10+dfsg-1build1 [5496 B] Get:179 http://ftpmaster.internal/ubuntu mantic/main armhf libgdk-pixbuf-2.0-0 armhf 2.42.10+dfsg-1build1 [133 kB] Get:180 http://ftpmaster.internal/ubuntu mantic/universe armhf libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] Get:181 http://ftpmaster.internal/ubuntu mantic/universe armhf libjs-popper.js all 1.16.1+ds-6 [54.1 kB] Get:182 http://ftpmaster.internal/ubuntu mantic/universe armhf libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] Get:183 http://ftpmaster.internal/ubuntu mantic/universe armhf libjs-d3 all 3.5.17-4 [132 kB] Get:184 http://ftpmaster.internal/ubuntu mantic/universe armhf libjs-es5-shim all 4.6.7-2 [39.8 kB] Get:185 http://ftpmaster.internal/ubuntu mantic/universe armhf libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] Get:186 http://ftpmaster.internal/ubuntu mantic/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] Get:187 http://ftpmaster.internal/ubuntu mantic/universe armhf libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] Get:188 http://ftpmaster.internal/ubuntu mantic/universe armhf libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] Get:189 http://ftpmaster.internal/ubuntu mantic/universe armhf libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] Get:190 http://ftpmaster.internal/ubuntu mantic/universe armhf libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] Get:191 http://ftpmaster.internal/ubuntu mantic/universe armhf libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] Get:192 http://ftpmaster.internal/ubuntu mantic/universe armhf libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] Get:193 http://ftpmaster.internal/ubuntu mantic/universe armhf libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] Get:194 http://ftpmaster.internal/ubuntu mantic/universe armhf libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] Get:195 http://ftpmaster.internal/ubuntu mantic/main armhf liblua5.3-0 armhf 5.3.6-2 [109 kB] Get:196 http://ftpmaster.internal/ubuntu mantic/main armhf librsvg2-2 armhf 2.54.5+dfsg-1ubuntu3 [2615 kB] Get:197 http://ftpmaster.internal/ubuntu mantic/universe armhf node-bootstrap-sass all 3.4.3-2 [187 kB] Get:198 http://ftpmaster.internal/ubuntu mantic/universe armhf node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] Get:199 http://ftpmaster.internal/ubuntu mantic/universe armhf node-normalize.css all 8.0.1-5 [10.8 kB] Get:200 http://ftpmaster.internal/ubuntu mantic/universe armhf pandoc-data all 2.17.1.1-1.1ubuntu1 [80.7 kB] Get:201 http://ftpmaster.internal/ubuntu mantic/universe armhf pandoc armhf 2.17.1.1-1.1ubuntu1 [29.0 MB] Get:202 http://ftpmaster.internal/ubuntu mantic-proposed/universe armhf r-bioc-biocgenerics all 0.46.0-1 [591 kB] Get:203 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-littler armhf 0.3.18-2 [86.9 kB] Get:204 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-rjson armhf 0.2.21-1 [142 kB] Get:205 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-bitops armhf 1.0-7-1 [29.4 kB] Get:206 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-rcurl armhf 1.98-1.12+dfsg-1 [790 kB] Get:207 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-dbi all 1.1.3-1 [686 kB] Get:208 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-digest armhf 0.6.33-1 [180 kB] Get:209 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-pkgkitten all 0.2.3-1 [25.1 kB] Get:210 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-rcpp armhf 1.0.11-1 [1958 kB] Get:211 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-cli armhf 3.6.1-1 [1308 kB] Get:212 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-glue armhf 1.6.2-1 [147 kB] Get:213 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-rlang armhf 1.1.1-1 [1646 kB] Get:214 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-lifecycle all 1.0.3+dfsg-1 [109 kB] Get:215 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-gtable all 0.3.3+dfsg-1 [192 kB] Get:216 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-isoband armhf 0.2.7-1 [1477 kB] Get:217 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-mass armhf 7.3-60-2 [1116 kB] Get:218 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-lattice armhf 0.21-8-2 [1325 kB] Get:219 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-nlme armhf 3.1.162-1 [2237 kB] Get:220 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-matrix armhf 1.6-0-1 [3843 kB] Get:221 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-mgcv armhf 1.9-0-1 [3163 kB] Get:222 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-farver armhf 2.1.1-1 [1346 kB] Get:223 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-labeling all 0.4.2-1 [62.6 kB] Get:224 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-colorspace armhf 2.1-0+dfsg-1 [1538 kB] Get:225 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-munsell all 0.5.0-2build1 [208 kB] Get:226 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-r6 all 2.5.1-1 [99.0 kB] Get:227 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] Get:228 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-viridislite all 0.4.2-2 [1088 kB] Get:229 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-scales all 1.2.1-1 [544 kB] Get:230 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-fansi armhf 1.0.4-1 [610 kB] Get:231 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-magrittr armhf 2.0.3-1 [154 kB] Get:232 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-utf8 armhf 1.2.3-1 [137 kB] Get:233 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-vctrs armhf 0.6.3-1 [1307 kB] Get:234 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-pillar all 1.9.0+dfsg-1 [464 kB] Get:235 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] Get:236 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-tibble armhf 3.2.1+dfsg-2 [415 kB] Get:237 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-withr all 2.5.0-1 [225 kB] Get:238 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-ggplot2 all 3.4.2+dfsg-2 [3414 kB] Get:239 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-gridextra all 2.3-3build1 [1024 kB] Get:240 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-png armhf 0.1-8-1 [39.6 kB] Get:241 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-base64enc armhf 0.1-3-3 [27.3 kB] Get:242 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-fastmap armhf 1.1.1-1 [68.1 kB] Get:243 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-ellipsis armhf 0.3.2-2 [35.0 kB] Get:244 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-htmltools armhf 0.5.5-1 [361 kB] Get:245 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-jsonlite armhf 1.8.5+dfsg-1 [437 kB] Get:246 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-yaml armhf 2.3.7-1 [96.7 kB] Get:247 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-evaluate all 0.21-1 [95.7 kB] Get:248 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-xfun armhf 0.39+dfsg-1 [413 kB] Get:249 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-highr all 0.10+dfsg-1 [38.3 kB] Get:250 http://ftpmaster.internal/ubuntu mantic/main armhf libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] Get:251 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-knitr all 1.43+dfsg-2 [904 kB] Get:252 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-fs armhf 1.6.2+dfsg-1 [224 kB] Get:253 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-rappdirs armhf 0.3.3-1 [47.4 kB] Get:254 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-sass armhf 0.4.6+dfsg-1 [891 kB] Get:255 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] Get:256 http://ftpmaster.internal/ubuntu mantic/universe armhf 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r-cran-htmlwidgets all 1.6.2+dfsg-1 [120 kB] Get:276 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-lazyeval armhf 0.2.2-1build1 [142 kB] Get:277 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-crosstalk all 1.2.0+dfsg-1 [175 kB] Get:278 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-dt all 0.28+dfsg-1 [232 kB] Get:279 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-rsvg armhf 2.4.0-1 [269 kB] Get:280 http://ftpmaster.internal/ubuntu mantic-proposed/universe armhf r-cran-bh all 1.81.0-1 [5814 B] Get:281 http://ftpmaster.internal/ubuntu mantic-proposed/universe armhf r-bioc-chemminer armhf 3.52.0+dfsg-1 [1175 kB] Get:282 http://ftpmaster.internal/ubuntu mantic/universe armhf r-cran-runit all 0.4.32-3 [283 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 241 MB in 12s (19.8 MB/s) Selecting previously unselected package libbsd0:armhf. 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Setting up libblas3:armhf (3.11.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libpkgconf3:armhf (1.8.1-2) ... Setting up libuv1:armhf (1.44.2-1) ... Setting up libalgorithm-c3-perl (0.11-2) ... Setting up libswitch-perl (2.17-3) ... Setting up libfreetype6:armhf (2.13.0+dfsg-1) ... Setting up libx11-data (2:1.8.6-1) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2build4) ... Setting up libfribidi0:armhf (1.0.13-3) ... Setting up libjs-d3 (3.5.17-4) ... Setting up libvariable-magic-perl (0.63-1) ... Setting up libio-html-perl (1.004-3) ... Setting up libtcl8.6:armhf (8.6.13+dfsg-2) ... Setting up autopoint (0.21-13) ... Setting up libb-hooks-op-check-perl:armhf (0.22-2build1) ... Setting up icu-devtools (72.1-3ubuntu2) ... Setting up fonts-dejavu-core (2.37-6) ... Setting up ucf (3.0043+nmu1) ... Setting up pkgconf-bin (1.8.1-2) ... Setting up libjpeg-turbo8:armhf (2.1.5-2ubuntu1) ... Setting up libparams-util-perl (1.102-2) ... Setting up libsasl2-2:armhf (2.1.28+dfsg1-1) ... Setting up libssh-4:armhf (0.10.5-2) ... Setting up libgfortran5:armhf (13.1.0-8ubuntu1) ... Setting up autoconf (2.71-3) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libwebp7:armhf (1.2.4-0.2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up liblzma-dev:armhf (5.4.1-0.2) ... Setting up libsub-name-perl:armhf (0.27-1) ... Setting up zlib1g-dev:armhf (1:1.2.13.dfsg-1ubuntu4) ... Setting up libpcre2-posix3:armhf (10.42-2) ... Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... Setting up libuchardet0:armhf (0.0.7-1build2) ... Setting up liblua5.3-0:armhf (5.3.6-2) ... Setting up libsub-override-perl (0.09-4) ... Setting up libharfbuzz0b:armhf (8.0.1-1) ... Setting up libthai-data (0.1.29-1build1) ... Setting up libdevel-globaldestruction-perl (0.14-4) ... Setting up node-bootstrap-sass (3.4.3-2) ... Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... Setting up libdevel-stacktrace-perl (2.0400-2) ... Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... Setting up pandoc-data (2.17.1.1-1.1ubuntu1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libgfortran-13-dev:armhf (13.1.0-8ubuntu1) ... Setting up libbsd0:armhf (0.11.7-4) ... Setting up node-normalize.css (8.0.1-5) ... Setting up libelf1:armhf (0.189-4) ... Setting up libicu-dev:armhf (72.1-3ubuntu2) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up xdg-utils (1.1.3-4.1ubuntu3) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libldap2:armhf (2.6.4+dfsg-1~exp1ubuntu1) ... Setting up liburi-perl (5.19-2) ... Setting up libblas-dev:armhf (3.11.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode Setting up dctrl-tools (2.24-3build2) ... Setting up libjs-bootstrap (3.4.1+dfsg-3) ... Setting up libbz2-dev:armhf (1.0.8-5build1) ... Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... Setting up libjs-jquery-datatables-extensions (0.0+git20150910.28fd64e+dfsg-5) ... Setting up libjpeg8:armhf (8c-2ubuntu11) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up r-cran-bh (1.81.0-1) ... Setting up libpaper1:armhf (1.1.29) ... Creating config file /etc/papersize with new version Setting up libice6:armhf (2:1.0.10-1build2) ... Setting up libhttp-date-perl (6.05-2) ... Setting up libdw1:armhf (0.189-4) ... Setting up libjpeg-turbo8-dev:armhf (2.1.5-2ubuntu1) ... Setting up libxdmcp6:armhf (1:1.1.3-0ubuntu5) ... Setting up liblapack3:armhf (3.11.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libxcb1:armhf (1.15-1) ... Setting up gettext (0.21-13) ... Setting up libpcre2-dev:armhf (10.42-2) ... Setting up libtool (2.4.7-6) ... Setting up libxcb-render0:armhf (1.15-1) ... Setting up fontconfig-config (2.14.1-4ubuntu1) ... Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... Setting up libpng-dev:armhf (1.6.40-1) ... Setting up libcurl3-gnutls:armhf (7.88.1-10ubuntu2) ... Setting up libxcb-shm0:armhf (1.15-1) ... Setting up libpaper-utils (1.1.29) ... Setting up libclass-c3-perl (0.35-2) ... Setting up libdevel-callchecker-perl:armhf (0.008-2) ... Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... Setting up pkgconf:armhf (1.8.1-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libthai0:armhf (0.1.29-1build1) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up pandoc (2.17.1.1-1.1ubuntu1) ... Setting up gfortran-13 (13.1.0-8ubuntu1) ... Setting up shared-mime-info (2.2-1) ... Setting up liblapack-dev:armhf (3.11.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode Setting up libdata-optlist-perl (0.114-1) ... Setting up pkg-config:armhf (1.8.1-2) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-2) ... Setting up libtiff6:armhf (4.5.0-6ubuntu1) ... Setting up debugedit (1:5.0-5) ... Setting up libcurl4:armhf (7.88.1-10ubuntu2) ... Setting up libx11-6:armhf (2:1.8.6-1) ... Setting up libgdk-pixbuf-2.0-0:armhf (2.42.10+dfsg-1build1) ... Setting up libfontconfig1:armhf (2.14.1-4ubuntu1) ... Setting up libmro-compat-perl (0.15-2) ... Setting up libjpeg8-dev:armhf (8c-2ubuntu11) ... Setting up libsm6:armhf (2:1.2.3-1build2) ... Setting up libxmuu1:armhf (2:1.1.3-3) ... Setting up libsub-exporter-perl (0.989-1) ... Setting up libhttp-message-perl (6.44-2ubuntu1) ... Setting up libeval-closure-perl (0.14-3) ... Setting up fontconfig (2.14.1-4ubuntu1) ... Regenerating fonts cache... done. Setting up libxrender1:armhf (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libparams-classify-perl:armhf (0.015-2build2) ... Setting up libpango-1.0-0:armhf (1.50.14+ds-1) ... Setting up libjpeg-dev:armhf (8c-2ubuntu11) ... Setting up libxext6:armhf (2:1.3.4-1build1) ... Setting up libwww-curl-perl:armhf (4.17-10) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up gfortran (4:13.1.0-4ubuntu2) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:armhf (1.17.8-2) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up libxt6:armhf (1:1.2.1-1.1) ... Setting up xauth (1:1.1.2-1) ... Setting up libcairo-gobject2:armhf (1.17.8-2) ... Setting up libxss1:armhf (1:1.2.3-1build2) ... Setting up libpangoft2-1.0-0:armhf (1.50.14+ds-1) ... Setting up libpangocairo-1.0-0:armhf (1.50.14+ds-1) ... Setting up libxft2:armhf (2.3.6-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libtk8.6:armhf (8.6.13-2) ... Setting up debhelper (13.11.4ubuntu3) ... Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up libclass-load-perl (0.25-2) ... Setting up librsvg2-2:armhf (2.54.5+dfsg-1ubuntu3) ... Setting up r-base-core (4.3.1-3) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.5.2-1) ... Setting up r-cran-labeling (0.4.2-1) ... Setting up r-cran-sourcetools (0.1.7-1-1) ... Setting up r-cran-rsvg (2.4.0-1) ... Setting up r-cran-lattice (0.21-8-2) ... Setting up r-cran-nlme (3.1.162-1) ... Setting up r-cran-farver (2.1.1-1) ... Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up r-cran-viridislite (0.4.2-2) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-2build1) ... Setting up r-cran-lazyeval (0.2.2-1build1) ... Setting up r-cran-commonmark (1.9.0-1) ... Setting up r-cran-r6 (2.5.1-1) ... Setting up r-cran-pkgkitten (0.2.3-1) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up r-cran-magrittr (2.0.3-1) ... Setting up r-cran-rappdirs (0.3.3-1) ... Setting up r-cran-littler (0.3.18-2) ... Setting up r-cran-fs (1.6.2+dfsg-1) ... Setting up r-cran-rcpp (1.0.11-1) ... Setting up r-bioc-biocgenerics (0.46.0-1) ... Setting up r-cran-rlang (1.1.1-1) ... Setting up r-base-dev (4.3.1-3) ... Setting up r-cran-xfun (0.39+dfsg-1) ... Setting up r-cran-withr (2.5.0-1) ... Setting up r-cran-mime (0.12-1) ... Setting up libmoose-perl:armhf (2.2203-1) ... Setting up r-cran-base64enc (0.1-3-3) ... Setting up r-cran-digest (0.6.33-1) ... Setting up r-cran-yaml (2.3.7-1) ... Setting up r-cran-evaluate (0.21-1) ... Setting up r-cran-dbi (1.1.3-1) ... Setting up r-cran-highr (0.10+dfsg-1) ... Setting up r-cran-fansi (1.0.4-1) ... Setting up r-cran-mass (7.3-60-2) ... Setting up r-cran-glue (1.6.2-1) ... Setting up r-cran-xtable (1:1.8-4-2) ... Setting up r-cran-cli (3.6.1-1) ... Setting up r-cran-lifecycle (1.0.3+dfsg-1) ... Setting up r-cran-bitops (1.0-7-1) ... Setting up r-cran-fastmap (1.1.1-1) ... Setting up r-cran-png (0.1-8-1) ... Setting up r-cran-jsonlite (1.8.5+dfsg-1) ... Setting up r-cran-pkgconfig (2.0.3-2build1) ... Setting up r-cran-utf8 (1.2.3-1) ... Setting up r-cran-colorspace (2.1-0+dfsg-1) ... Setting up r-cran-stringi (1.7.12-1build1) ... Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... Setting up r-cran-isoband (0.2.7-1) ... Setting up r-cran-runit (0.4.32-3) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-cran-gtable (0.3.3+dfsg-1) ... Setting up r-cran-later (1.3.1+dfsg-1) ... Setting up r-cran-matrix (1.6-0-1) ... Setting up r-cran-tinytex (0.45-1) ... Setting up r-cran-knitr (1.43+dfsg-2) ... Setting up r-cran-mgcv (1.9-0-1) ... Setting up r-cran-cachem (1.0.8-1) ... Setting up r-cran-rjson (0.2.21-1) ... Setting up r-cran-rcurl (1.98-1.12+dfsg-1) ... Setting up r-cran-vctrs (0.6.3-1) ... Setting up r-cran-pillar (1.9.0+dfsg-1) ... Setting up r-cran-ellipsis (0.3.2-2) ... Setting up r-cran-stringr (1.5.0-1) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up r-cran-munsell (0.5.0-2build1) ... Setting up r-cran-tibble (3.2.1+dfsg-2) ... Setting up r-cran-gridextra (2.3-3build1) ... Setting up r-cran-scales (1.2.1-1) ... Setting up r-cran-memoise (2.0.1-1) ... Setting up r-cran-promises (1.2.0.1+dfsg-1) ... Setting up r-cran-htmltools (0.5.5-1) ... Setting up r-cran-sass (0.4.6+dfsg-1) ... Setting up dh-r (20230707ubuntu1) ... Setting up r-cran-ggplot2 (3.4.2+dfsg-2) ... Setting up r-cran-httpuv (1.6.11+dfsg-1) ... Setting up r-cran-fontawesome (0.5.1-1) ... Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... Setting up r-cran-bslib (0.4.2+dfsg-1) ... Setting up r-cran-shiny (1.7.4+dfsg-3) ... Setting up r-cran-rmarkdown (2.22+dfsg-1) ... Setting up r-cran-crosstalk (1.2.0+dfsg-1) ... Setting up r-cran-htmlwidgets (1.6.2+dfsg-1) ... Setting up r-cran-dt (0.28+dfsg-1) ... Setting up r-bioc-chemminer (3.52.0+dfsg-1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.37-0ubuntu2) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-153-generic #170-Ubuntu SMP Fri Jun 16 13:46:00 UTC 2023 arm64 (armv7l) Toolchain package versions: binutils_2.40.90.20230720-1ubuntu1 dpkg-dev_1.21.22ubuntu1 g++-12_12.3.0-6ubuntu1 g++-13_13.1.0-8ubuntu1 gcc-12_12.3.0-6ubuntu1 gcc-13_13.1.0-8ubuntu1 libc6-dev_2.37-0ubuntu2 libstdc++-12-dev_12.3.0-6ubuntu1 libstdc++-13-dev_13.1.0-8ubuntu1 libstdc++6_13.1.0-8ubuntu1 linux-libc-dev_6.3.0-7.7 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 apt_2.7.2 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13 autotools-dev_20220109.1 base-files_13ubuntu1 base-passwd_3.6.1 bash_5.2.15-2ubuntu1 binutils_2.40.90.20230720-1ubuntu1 binutils-arm-linux-gnueabihf_2.40.90.20230720-1ubuntu1 binutils-common_2.40.90.20230720-1ubuntu1 bsdextrautils_2.38.1-5ubuntu2 bsdutils_1:2.38.1-5ubuntu2 build-essential_12.10ubuntu1 bzip2_1.0.8-5build1 ca-certificates_20230311ubuntu1 coreutils_9.1-1ubuntu2 cpp_4:13.1.0-4ubuntu2 cpp-12_12.3.0-6ubuntu1 cpp-13_13.1.0-8ubuntu1 dash_0.5.12-2ubuntu1 dctrl-tools_2.24-3build2 debconf_1.5.82 debhelper_13.11.4ubuntu3 debianutils_5.8-1 debugedit_1:5.0-5 dh-autoreconf_20 dh-r_20230707ubuntu1 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dpkg_1.21.22ubuntu1 dpkg-dev_1.21.22ubuntu1 dwz_0.15-1 e2fsprogs_1.47.0-1ubuntu2 fakeroot_1.32.1-1 file_1:5.44-3 findutils_4.9.0-5 fontconfig_2.14.1-4ubuntu1 fontconfig-config_2.14.1-4ubuntu1 fonts-dejavu-core_2.37-6 fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1 fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3 fonts-mathjax_2.7.9+dfsg-1 g++_4:13.1.0-4ubuntu2 g++-12_12.3.0-6ubuntu1 g++-13_13.1.0-8ubuntu1 gcc_4:13.1.0-4ubuntu2 gcc-12_12.3.0-6ubuntu1 gcc-12-base_12.3.0-6ubuntu1 gcc-13_13.1.0-8ubuntu1 gcc-13-base_13.1.0-8ubuntu1 gettext_0.21-13 gettext-base_0.21-13 gfortran_4:13.1.0-4ubuntu2 gfortran-13_13.1.0-8ubuntu1 gpg_2.2.40-1.1ubuntu1 gpg-agent_2.2.40-1.1ubuntu1 gpgconf_2.2.40-1.1ubuntu1 gpgv_2.2.40-1.1ubuntu1 grep_3.11-1 groff-base_1.23.0-2 gzip_1.12-1ubuntu1 hostname_3.23+nmu1ubuntu1 icu-devtools_72.1-3ubuntu2 init_1.65.2ubuntu1 init-system-helpers_1.65.2ubuntu1 intltool-debian_0.35.0+20060710.6 javascript-common_11+nmu1 libacl1_2.3.1-3 libalgorithm-c3-perl_0.11-2 libapparmor1_3.0.8-1ubuntu4 libapt-pkg6.0_2.7.2 libarchive-zip-perl_1.68-1 libargon2-1_0~20190702+dfsg-3 libasan8_13.1.0-8ubuntu1 libassuan0_2.5.5-5 libatomic1_13.1.0-8ubuntu1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.1-1 libaudit1_1:3.1.1-1 libb-hooks-endofscope-perl_0.26-1 libb-hooks-op-check-perl_0.22-2build1 libbinutils_2.40.90.20230720-1ubuntu1 libblas-dev_3.11.0-2 libblas3_3.11.0-2 libblkid1_2.38.1-5ubuntu2 libboost1.81-dev_1.81.0-6 libbrotli1_1.0.9-2build8 libbsd0_0.11.7-4 libbz2-1.0_1.0.8-5build1 libbz2-dev_1.0.8-5build1 libc-bin_2.37-0ubuntu2 libc-dev-bin_2.37-0ubuntu2 libc6_2.37-0ubuntu2 libc6-dev_2.37-0ubuntu2 libcairo-gobject2_1.17.8-2 libcairo2_1.17.8-2 libcap-ng0_0.8.3-1build2 libcap2_1:2.66-4ubuntu1 libcc1-0_13.1.0-8ubuntu1 libclass-c3-perl_0.35-2 libclass-load-perl_0.25-2 libclass-load-xs-perl_0.10-2build1 libclone-perl_0.46-1 libcom-err2_1.47.0-1ubuntu2 libcrypt-dev_1:4.4.35-1 libcrypt1_1:4.4.35-1 libcryptsetup12_2:2.6.1-4ubuntu1 libctf-nobfd0_2.40.90.20230720-1ubuntu1 libctf0_2.40.90.20230720-1ubuntu1 libcurl3-gnutls_7.88.1-10ubuntu2 libcurl4_7.88.1-10ubuntu2 libdata-optlist-perl_0.114-1 libdatrie1_0.2.13-2 libdb5.3_5.3.28+dfsg2-1 libdebconfclient0_0.270ubuntu1 libdebhelper-perl_13.11.4ubuntu3 libdeflate0_1.15-1 libdevel-callchecker-perl_0.008-2 libdevel-globaldestruction-perl_0.14-4 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+------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-fmcsr Binary: r-bioc-fmcsr Architecture: any Version: 1.42.0+dfsg-1 Maintainer: Debian R Packages Maintainers Uploaders: Andreas Tille Homepage: https://bioconductor.org/packages/fmcsR/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-fmcsr Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-fmcsr.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-chemminer, r-cran-runit, r-bioc-biocgenerics Package-List: r-bioc-fmcsr deb gnu-r optional arch=any Checksums-Sha1: bb77c9545a6d6cb83c26a396a993577d0327d3c9 65296 r-bioc-fmcsr_1.42.0+dfsg.orig.tar.xz 65efe05e2f766135accfea90cc7310a7a285ec9f 5628 r-bioc-fmcsr_1.42.0+dfsg-1.debian.tar.xz 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LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-26439521 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-26439521 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-26439521 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package r-bioc-fmcsr dpkg-buildpackage: info: source version 1.42.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary-arch dh binary-arch --buildsystem R dh_update_autotools_config -a -O--buildsystem=R dh_autoreconf -a -O--buildsystem=R configure.ac:32: warning: AC_OUTPUT should be used without arguments. configure.ac:32: You should run autoupdate. dh_auto_configure -a -O--buildsystem=R dh_auto_build -a -O--buildsystem=R dh_auto_test -a -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=R dh_prep -a -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-fmcsr/ -a -O--buildsystem=R I: R Package: fmcsR Version: 1.42.0 I: Building using R version 4.3.1-3 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Fri, 21 Jul 2023 06:28:54 +0200 mkdir -p /<>/r-bioc-fmcsr-1.42.0\+dfsg/debian/r-bioc-fmcsr/usr/lib/R/site-library R CMD INSTALL -l /<>/r-bioc-fmcsr-1.42.0\+dfsg/debian/r-bioc-fmcsr/usr/lib/R/site-library --clean . "--built-timestamp='Fri, 21 Jul 2023 06:28:54 +0200'" * installing *source* package ‘fmcsR’ ... ** using staged installation checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ -std=gnu++17 accepts -g... yes checking for g++ -std=gnu++17 option to enable C++11 features... none needed checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for _Bool... yes checking for stdbool.h that conforms to C99... yes checking for inline... inline checking for size_t... yes checking for alarm... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating config.h ** libs using C++ compiler: ‘g++ (Ubuntu 13.1.0-8ubuntu1) 13.1.0’ make[1]: Entering directory '/<>/src' g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-trSoeA/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/build/r-base-trSoeA/r-base-4.3.1=/usr/src/r-base-4.3.1-3 -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c MCS.cpp -o MCS.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-trSoeA/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/build/r-base-trSoeA/r-base-4.3.1=/usr/src/r-base-4.3.1-3 -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c MCSCompound.cpp -o MCSCompound.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-trSoeA/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/build/r-base-trSoeA/r-base-4.3.1=/usr/src/r-base-4.3.1-3 -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c MCSMap.cpp -o MCSMap.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-trSoeA/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/build/r-base-trSoeA/r-base-4.3.1=/usr/src/r-base-4.3.1-3 -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c MCSRingDetector.cpp -o MCSRingDetector.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-trSoeA/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/build/r-base-trSoeA/r-base-4.3.1=/usr/src/r-base-4.3.1-3 -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c fmcs_R_wrap.cpp -o fmcs_R_wrap.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-trSoeA/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/build/r-base-trSoeA/r-base-4.3.1=/usr/src/r-base-4.3.1-3 -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c util.cpp -o util.o g++ -std=gnu++17 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o fmcsR.so MCS.o MCSCompound.o MCSMap.o MCSRingDetector.o fmcs_R_wrap.o util.o -L/usr/lib/R/lib -lR make[1]: Leaving directory '/<>/src' make[1]: Entering directory '/<>/src' make[1]: Leaving directory '/<>/src' installing to /<>/debian/r-bioc-fmcsr/usr/lib/R/site-library/00LOCK-r-bioc-fmcsr-1.42.0+dfsg/00new/fmcsR/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fmcsR) Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 302. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 303. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 306. W: Ignoring specified R dependency: R (>= 2.10.0) I: Using r-bioc-chemminer for Depends:ChemmineR I: Using r-bioc-biocstyle for Suggests:BiocStyle I: Using r-cran-knitr for Suggests:knitr W: Cannot find a debian package for Suggests:knitcitations W: Cannot find a debian package for Suggests:knitrBootstrap I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-cran-runit for Imports:RUnit I: Using r-bioc-chemminer for Imports:ChemmineR I: Using r-bioc-biocgenerics for Imports:BiocGenerics I: BioConductor API version: r-api-bioc-3.17 I: Use r-bioc-fmcsr as Debian binary package for variables substitution dh_installdocs -a -O--buildsystem=R dh_installchangelogs -a -O--buildsystem=R dh_installsystemduser -a -O--buildsystem=R dh_perl -a -O--buildsystem=R dh_link -a -O--buildsystem=R dh_strip_nondeterminism -a -O--buildsystem=R dh_compress -a -O--buildsystem=R dh_fixperms -a -O--buildsystem=R dh_missing -a -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R b33989717cbad3435b3d39f0f5ddbb5e7d4525ae dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -a -O--buildsystem=R dh_gencontrol -a -O--buildsystem=R dh_md5sums -a -O--buildsystem=R dh_builddeb -a -O--buildsystem=R INFO: pkgstriptranslations version 153 INFO: pkgstriptranslations version 153 pkgstriptranslations: processing r-bioc-fmcsr (in debian/r-bioc-fmcsr); do_strip: , oemstrip: pkgstriptranslations: processing r-bioc-fmcsr-dbgsym (in debian/.debhelper/r-bioc-fmcsr/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/r-bioc-fmcsr/dbgsym-root/DEBIAN/control, package r-bioc-fmcsr-dbgsym, directory debian/.debhelper/r-bioc-fmcsr/dbgsym-root dpkg-deb: building package 'r-bioc-fmcsr-dbgsym' in 'debian/.debhelper/scratch-space/build-r-bioc-fmcsr/r-bioc-fmcsr-dbgsym_1.42.0+dfsg-1_armhf.deb'. Renaming r-bioc-fmcsr-dbgsym_1.42.0+dfsg-1_armhf.deb to r-bioc-fmcsr-dbgsym_1.42.0+dfsg-1_armhf.ddeb pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-bioc-fmcsr/DEBIAN/control, package r-bioc-fmcsr, directory debian/r-bioc-fmcsr pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-bioc-fmcsr ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-bioc-fmcsr' in '../r-bioc-fmcsr_1.42.0+dfsg-1_armhf.deb'. dpkg-genbuildinfo --build=any -O../r-bioc-fmcsr_1.42.0+dfsg-1_armhf.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../r-bioc-fmcsr_1.42.0+dfsg-1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-07-21T11:47:43Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-bioc-fmcsr_1.42.0+dfsg-1_armhf.changes: ----------------------------------------- Format: 1.8 Date: Fri, 21 Jul 2023 06:28:54 +0200 Source: r-bioc-fmcsr Binary: r-bioc-fmcsr Built-For-Profiles: noudeb Architecture: armhf Version: 1.42.0+dfsg-1 Distribution: mantic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: r-bioc-fmcsr - GNU R mismatch tolerant maximum common substructure searching Changes: r-bioc-fmcsr (1.42.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.2 (routine-update) * Reduce piuparts noise in transitions (routine-update) * Do not use vignette for testing and add d/t/autopkgtest-pkg-r.conf Checksums-Sha1: bc331d40fb37761d91509194c3e77b02fd23b6f2 147902 r-bioc-fmcsr-dbgsym_1.42.0+dfsg-1_armhf.ddeb 8fa791ea5e9253f4220ca8f5dbd9edd447112355 14313 r-bioc-fmcsr_1.42.0+dfsg-1_armhf.buildinfo b14af1552884355fb683f8b5075fbdcb91980aa8 229782 r-bioc-fmcsr_1.42.0+dfsg-1_armhf.deb Checksums-Sha256: 1f74fb8f63325305bd16b9db06250f197c1d35ae80dabca205584b5630bd3f2b 147902 r-bioc-fmcsr-dbgsym_1.42.0+dfsg-1_armhf.ddeb ea4091c023c853010d56d84502ef74a4c672a9025bb54e199214e4943cb1db1f 14313 r-bioc-fmcsr_1.42.0+dfsg-1_armhf.buildinfo 749a441aea4729a1df9ba57d5933fa0891b0846af36bef07feb550fba7cdf661 229782 r-bioc-fmcsr_1.42.0+dfsg-1_armhf.deb Files: c508b53c582d94b5be99b68d8c2e590c 147902 debug optional r-bioc-fmcsr-dbgsym_1.42.0+dfsg-1_armhf.ddeb 08d16dd979fc77740f8d39ccdfdc80c8 14313 gnu-r optional r-bioc-fmcsr_1.42.0+dfsg-1_armhf.buildinfo daa71760d66befb7db4b3367d48af4f1 229782 gnu-r optional r-bioc-fmcsr_1.42.0+dfsg-1_armhf.deb /<>/r-bioc-fmcsr_1.42.0+dfsg-1_armhf.changes.new could not be renamed to /<>/r-bioc-fmcsr_1.42.0+dfsg-1_armhf.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: r-bioc-fmcsr Binary: r-bioc-fmcsr r-bioc-fmcsr-dbgsym Architecture: armhf Version: 1.42.0+dfsg-1 Checksums-Md5: c508b53c582d94b5be99b68d8c2e590c 147902 r-bioc-fmcsr-dbgsym_1.42.0+dfsg-1_armhf.ddeb daa71760d66befb7db4b3367d48af4f1 229782 r-bioc-fmcsr_1.42.0+dfsg-1_armhf.deb Checksums-Sha1: bc331d40fb37761d91509194c3e77b02fd23b6f2 147902 r-bioc-fmcsr-dbgsym_1.42.0+dfsg-1_armhf.ddeb b14af1552884355fb683f8b5075fbdcb91980aa8 229782 r-bioc-fmcsr_1.42.0+dfsg-1_armhf.deb Checksums-Sha256: 1f74fb8f63325305bd16b9db06250f197c1d35ae80dabca205584b5630bd3f2b 147902 r-bioc-fmcsr-dbgsym_1.42.0+dfsg-1_armhf.ddeb 749a441aea4729a1df9ba57d5933fa0891b0846af36bef07feb550fba7cdf661 229782 r-bioc-fmcsr_1.42.0+dfsg-1_armhf.deb Build-Origin: Ubuntu Build-Architecture: armhf Build-Date: Fri, 21 Jul 2023 11:47:43 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-13), autotools-dev (= 20220109.1), base-files (= 13ubuntu1), base-passwd (= 3.6.1), bash (= 5.2.15-2ubuntu1), binutils (= 2.40.90.20230720-1ubuntu1), binutils-arm-linux-gnueabihf (= 2.40.90.20230720-1ubuntu1), binutils-common (= 2.40.90.20230720-1ubuntu1), bsdextrautils (= 2.38.1-5ubuntu2), bsdutils (= 1:2.38.1-5ubuntu2), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5build1), ca-certificates (= 20230311ubuntu1), coreutils (= 9.1-1ubuntu2), cpp (= 4:13.1.0-4ubuntu2), cpp-12 (= 12.3.0-6ubuntu1), cpp-13 (= 13.1.0-8ubuntu1), dash (= 0.5.12-2ubuntu1), dctrl-tools (= 2.24-3build2), debconf (= 1.5.82), debhelper (= 13.11.4ubuntu3), debianutils (= 5.8-1), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-r (= 20230707ubuntu1), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.8-4), dpkg (= 1.21.22ubuntu1), dpkg-dev (= 1.21.22ubuntu1), dwz (= 0.15-1), file (= 1:5.44-3), findutils (= 4.9.0-5), fontconfig (= 2.14.1-4ubuntu1), fontconfig-config (= 2.14.1-4ubuntu1), fonts-dejavu-core (= 2.37-6), fonts-font-awesome (= 5.0.10+really4.7.0~dfsg-4.1), fonts-glyphicons-halflings (= 1.009~3.4.1+dfsg-3), fonts-mathjax (= 2.7.9+dfsg-1), g++ (= 4:13.1.0-4ubuntu2), g++-13 (= 13.1.0-8ubuntu1), gcc (= 4:13.1.0-4ubuntu2), gcc-12 (= 12.3.0-6ubuntu1), gcc-12-base (= 12.3.0-6ubuntu1), gcc-13 (= 13.1.0-8ubuntu1), gcc-13-base (= 13.1.0-8ubuntu1), gettext (= 0.21-13), gettext-base (= 0.21-13), gfortran (= 4:13.1.0-4ubuntu2), gfortran-13 (= 13.1.0-8ubuntu1), grep (= 3.11-1), groff-base (= 1.23.0-2), gzip (= 1.12-1ubuntu1), hostname (= 3.23+nmu1ubuntu1), icu-devtools (= 72.1-3ubuntu2), init-system-helpers (= 1.65.2ubuntu1), intltool-debian (= 0.35.0+20060710.6), javascript-common (= 11+nmu1), libacl1 (= 2.3.1-3), libalgorithm-c3-perl (= 0.11-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 13.1.0-8ubuntu1), libatomic1 (= 13.1.0-8ubuntu1), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.1.1-1), libaudit1 (= 1:3.1.1-1), libb-hooks-endofscope-perl (= 0.26-1), libb-hooks-op-check-perl (= 0.22-2build1), libbinutils (= 2.40.90.20230720-1ubuntu1), libblas-dev (= 3.11.0-2), libblas3 (= 3.11.0-2), libblkid1 (= 2.38.1-5ubuntu2), libboost1.81-dev (= 1.81.0-6), libbrotli1 (= 1.0.9-2build8), libbsd0 (= 0.11.7-4), libbz2-1.0 (= 1.0.8-5build1), libbz2-dev (= 1.0.8-5build1), libc-bin (= 2.37-0ubuntu2), libc-dev-bin (= 2.37-0ubuntu2), libc6 (= 2.37-0ubuntu2), libc6-dev (= 2.37-0ubuntu2), libcairo-gobject2 (= 1.17.8-2), libcairo2 (= 1.17.8-2), libcap-ng0 (= 0.8.3-1build2), libcap2 (= 1:2.66-4ubuntu1), libcc1-0 (= 13.1.0-8ubuntu1), libclass-c3-perl (= 0.35-2), libclass-load-perl (= 0.25-2), libclass-load-xs-perl (= 0.10-2build1), libclone-perl (= 0.46-1), libcom-err2 (= 1.47.0-1ubuntu2), libcrypt-dev (= 1:4.4.35-1), libcrypt1 (= 1:4.4.35-1), libctf-nobfd0 (= 2.40.90.20230720-1ubuntu1), libctf0 (= 2.40.90.20230720-1ubuntu1), libcurl3-gnutls (= 7.88.1-10ubuntu2), libcurl4 (= 7.88.1-10ubuntu2), libdata-optlist-perl (= 0.114-1), libdatrie1 (= 0.2.13-2), libdb5.3 (= 5.3.28+dfsg2-1), libdebconfclient0 (= 0.270ubuntu1), libdebhelper-perl (= 13.11.4ubuntu3), libdeflate0 (= 1.15-1), libdevel-callchecker-perl (= 0.008-2), libdevel-globaldestruction-perl (= 0.14-4), libdevel-overloadinfo-perl (= 0.007-1), libdevel-stacktrace-perl (= 2.0400-2), libdist-checkconflicts-perl (= 0.11-2), libdpkg-perl (= 1.21.22ubuntu1), libdw1 (= 0.189-4), libdynaloader-functions-perl (= 0.003-3), libelf1 (= 0.189-4), libencode-locale-perl (= 1.05-3), libeval-closure-perl (= 0.14-3), libexpat1 (= 2.5.0-2), libffi8 (= 3.4.4-1), libfile-stripnondeterminism-perl (= 1.13.1-1), libfile-which-perl (= 1.27-2), libfontconfig1 (= 2.14.1-4ubuntu1), libfreetype6 (= 2.13.0+dfsg-1), libfribidi0 (= 1.0.13-3), libgcc-12-dev (= 12.3.0-6ubuntu1), libgcc-13-dev (= 13.1.0-8ubuntu1), libgcc-s1 (= 13.1.0-8ubuntu1), libgcrypt20 (= 1.10.2-2ubuntu1), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgdk-pixbuf-2.0-0 (= 2.42.10+dfsg-1build1), libgdk-pixbuf2.0-common (= 2.42.10+dfsg-1build1), libgfortran-13-dev (= 13.1.0-8ubuntu1), libgfortran5 (= 13.1.0-8ubuntu1), libglib2.0-0 (= 2.77.0-0ubuntu3), libgmp10 (= 2:6.2.1+dfsg1-1.1ubuntu2), libgnutls30 (= 3.7.9-2ubuntu1), libgomp1 (= 13.1.0-8ubuntu1), libgpg-error0 (= 1.46-1), libgraphite2-3 (= 1.3.14-1build2), libgssapi-krb5-2 (= 1.20.1-2), libharfbuzz0b (= 8.0.1-1), libhogweed6 (= 3.8.1-2), libhttp-date-perl (= 6.05-2), libhttp-message-perl (= 6.44-2ubuntu1), libice6 (= 2:1.0.10-1build2), libicu-dev (= 72.1-3ubuntu2), libicu72 (= 72.1-3ubuntu2), libidn2-0 (= 2.3.4-1), libio-html-perl (= 1.004-3), libisl23 (= 0.26-3), libjansson4 (= 2.14-2), libjbig0 (= 2.1-6.1ubuntu1), libjpeg-dev (= 8c-2ubuntu11), libjpeg-turbo8 (= 2.1.5-2ubuntu1), libjpeg-turbo8-dev (= 2.1.5-2ubuntu1), libjpeg8 (= 8c-2ubuntu11), libjpeg8-dev (= 8c-2ubuntu11), libjs-bootstrap (= 3.4.1+dfsg-3), libjs-bootstrap4 (= 4.6.1+dfsg1-4), libjs-d3 (= 3.5.17-4), libjs-es5-shim (= 4.6.7-2), libjs-highlight.js (= 9.18.5+dfsg1-2), libjs-jquery (= 3.6.1+dfsg+~3.5.14-1), libjs-jquery-datatables (= 1.11.5+dfsg-2), libjs-jquery-datatables-extensions (= 0.0+git20150910.28fd64e+dfsg-5), libjs-jquery-selectize.js (= 0.12.6+dfsg-1.1), libjs-jquery-ui (= 1.13.2+dfsg-1), libjs-json (= 0~20221030+~1.0.8-1), libjs-mathjax (= 2.7.9+dfsg-1), libjs-microplugin.js (= 0.0.3+dfsg-1.1), libjs-modernizr (= 2.6.2+ds1-5), libjs-popper.js (= 1.16.1+ds-6), libjs-prettify (= 2015.12.04+dfsg-1.1), libjs-sifter.js (= 0.6.0+dfsg-3), libjs-twitter-bootstrap-datepicker (= 1.3.1+dfsg1-4.1), libk5crypto3 (= 1.20.1-2), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-2), libkrb5support0 (= 1.20.1-2), liblapack-dev (= 3.11.0-2), liblapack3 (= 3.11.0-2), libldap2 (= 2.6.4+dfsg-1~exp1ubuntu1), liblerc4 (= 4.0.0+ds-2ubuntu2), liblua5.3-0 (= 5.3.6-2), liblwp-mediatypes-perl (= 6.04-2), liblz4-1 (= 1.9.4-1), liblzma-dev (= 5.4.1-0.2), liblzma5 (= 5.4.1-0.2), libmagic-mgc (= 1:5.44-3), libmagic1 (= 1:5.44-3), libmd0 (= 1.1.0-1), libmodule-implementation-perl (= 0.09-2), libmodule-runtime-conflicts-perl (= 0.003-2), libmodule-runtime-perl (= 0.016-2), libmoose-perl (= 2.2203-1), libmount1 (= 2.38.1-5ubuntu2), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.0-1), libmro-compat-perl (= 0.15-2), libnamespace-clean-perl (= 0.27-2), libncurses-dev (= 6.4+20230625-1), libncurses6 (= 6.4+20230625-1), libncursesw6 (= 6.4+20230625-1), libnettle8 (= 3.8.1-2), libnghttp2-14 (= 1.55.1-1), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libp11-kit0 (= 0.24.1-2ubuntu1), libpackage-deprecationmanager-perl (= 0.18-1), libpackage-stash-perl (= 0.40-1), libpackage-stash-xs-perl (= 0.30-1build1), libpam-modules (= 1.5.2-6ubuntu1), libpam-modules-bin (= 1.5.2-6ubuntu1), libpam-runtime (= 1.5.2-6ubuntu1), libpam0g (= 1.5.2-6ubuntu1), libpango-1.0-0 (= 1.50.14+ds-1), libpangocairo-1.0-0 (= 1.50.14+ds-1), libpangoft2-1.0-0 (= 1.50.14+ds-1), libpaper-utils (= 1.1.29), libpaper1 (= 1.1.29), libparams-classify-perl (= 0.015-2build2), libparams-util-perl (= 1.102-2), libpcre2-16-0 (= 10.42-2), libpcre2-32-0 (= 10.42-2), libpcre2-8-0 (= 10.42-2), libpcre2-dev (= 10.42-2), libpcre2-posix3 (= 10.42-2), libperl5.36 (= 5.36.0-7ubuntu1), libpipeline1 (= 1.5.7-1), libpixman-1-0 (= 0.42.2-1), libpkgconf3 (= 1.8.1-2), libpng-dev (= 1.6.40-1), libpng16-16 (= 1.6.40-1), libpsl5 (= 0.21.2-1), libreadline-dev (= 8.2-1.3), libreadline8 (= 8.2-1.3), librsvg2-2 (= 2.54.5+dfsg-1ubuntu3), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build4), libsasl2-2 (= 2.1.28+dfsg1-1), libsasl2-modules-db (= 2.1.28+dfsg1-1), libseccomp2 (= 2.5.4-1ubuntu3), libselinux1 (= 3.5-1), libsframe1 (= 2.40.90.20230720-1ubuntu1), libsm6 (= 2:1.2.3-1build2), libsmartcols1 (= 2.38.1-5ubuntu2), libssh-4 (= 0.10.5-2), libssl3 (= 3.0.9-1ubuntu1), libstdc++-13-dev (= 13.1.0-8ubuntu1), libstdc++6 (= 13.1.0-8ubuntu1), libsub-exporter-perl (= 0.989-1), libsub-exporter-progressive-perl (= 0.001013-3), libsub-identify-perl (= 0.14-3), libsub-install-perl (= 0.929-1), libsub-name-perl (= 0.27-1), libsub-override-perl (= 0.09-4), libswitch-perl (= 2.17-3), libsystemd0 (= 253.5-1ubuntu1), libtasn1-6 (= 4.19.0-3), libtcl8.6 (= 8.6.13+dfsg-2), libthai-data (= 0.1.29-1build1), libthai0 (= 0.1.29-1build1), libtiff6 (= 4.5.0-6ubuntu1), libtimedate-perl (= 2.3300-2), libtinfo6 (= 6.4+20230625-1), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtk8.6 (= 8.6.13-2), libtool (= 2.4.7-6), libtry-tiny-perl (= 0.31-2), libubsan1 (= 13.1.0-8ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 253.5-1ubuntu1), libunistring2 (= 1.0-2), liburi-perl (= 5.19-2), libuuid1 (= 2.38.1-5ubuntu2), libuv1 (= 1.44.2-1), libvariable-magic-perl (= 0.63-1), libwebp7 (= 1.2.4-0.2), libwww-curl-perl (= 4.17-10), libwww-curl-simple-perl (= 0.100191-3), libx11-6 (= 2:1.8.6-1), libx11-data (= 2:1.8.6-1), libxau6 (= 1:1.0.9-1build5), libxcb-render0 (= 1.15-1), libxcb-shm0 (= 1.15-1), libxcb1 (= 1.15-1), libxdmcp6 (= 1:1.1.3-0ubuntu5), libxext6 (= 2:1.3.4-1build1), libxft2 (= 2.3.6-1), libxml2 (= 2.9.14+dfsg-1.3), libxmuu1 (= 2:1.1.3-3), libxrender1 (= 1:0.9.10-1.1), libxss1 (= 1:1.2.3-1build2), libxt6 (= 1:1.2.1-1.1), libyaml-0-2 (= 0.2.5-1), libzstd1 (= 1.5.5+dfsg2-1ubuntu2), linux-libc-dev (= 6.3.0-7.7), login (= 1:4.13+dfsg1-1ubuntu1), lsb-base (= 11.6), lto-disabled-list (= 41), m4 (= 1.4.19-3), make (= 4.3-4.1build1), man-db (= 2.11.2-2), mawk (= 1.3.4.20230525-1), ncurses-base (= 6.4+20230625-1), ncurses-bin (= 6.4+20230625-1), node-bootstrap-sass (= 3.4.3-2), node-html5shiv (= 3.7.3+dfsg-5), node-normalize.css (= 8.0.1-5), openssl (= 3.0.9-1ubuntu1), pandoc (= 2.17.1.1-1.1ubuntu1), pandoc-data (= 2.17.1.1-1.1ubuntu1), patch (= 2.7.6-7build2), perl (= 5.36.0-7ubuntu1), perl-base (= 5.36.0-7ubuntu1), perl-modules-5.36 (= 5.36.0-7ubuntu1), pkg-config (= 1.8.1-2), pkgconf (= 1.8.1-2), pkgconf-bin (= 1.8.1-2), po-debconf (= 1.0.21+nmu1), r-base-core (= 4.3.1-3), r-base-dev (= 4.3.1-3), r-bioc-biocgenerics (= 0.46.0-1), r-bioc-chemminer (= 3.52.0+dfsg-1), r-cran-base64enc (= 0.1-3-3), r-cran-bh (= 1.81.0-1), r-cran-bitops (= 1.0-7-1), r-cran-bslib (= 0.4.2+dfsg-1), r-cran-cachem (= 1.0.8-1), r-cran-cli (= 3.6.1-1), r-cran-colorspace (= 2.1-0+dfsg-1), r-cran-commonmark (= 1.9.0-1), r-cran-crayon (= 1.5.2-1), r-cran-crosstalk (= 1.2.0+dfsg-1), r-cran-dbi (= 1.1.3-1), r-cran-digest (= 0.6.33-1), r-cran-dt (= 0.28+dfsg-1), r-cran-ellipsis (= 0.3.2-2), r-cran-evaluate (= 0.21-1), r-cran-fansi (= 1.0.4-1), r-cran-farver (= 2.1.1-1), r-cran-fastmap (= 1.1.1-1), r-cran-fontawesome (= 0.5.1-1), r-cran-fs (= 1.6.2+dfsg-1), r-cran-ggplot2 (= 3.4.2+dfsg-2), r-cran-glue (= 1.6.2-1), r-cran-gridextra (= 2.3-3build1), r-cran-gtable (= 0.3.3+dfsg-1), r-cran-highr (= 0.10+dfsg-1), r-cran-htmltools (= 0.5.5-1), r-cran-htmlwidgets (= 1.6.2+dfsg-1), r-cran-httpuv (= 1.6.11+dfsg-1), r-cran-isoband (= 0.2.7-1), r-cran-jquerylib (= 0.1.4+dfsg-4), r-cran-jsonlite (= 1.8.5+dfsg-1), r-cran-knitr (= 1.43+dfsg-2), r-cran-labeling (= 0.4.2-1), r-cran-later (= 1.3.1+dfsg-1), r-cran-lattice (= 0.21-8-2), r-cran-lazyeval (= 0.2.2-1build1), r-cran-lifecycle (= 1.0.3+dfsg-1), r-cran-littler (= 0.3.18-2), r-cran-magrittr (= 2.0.3-1), r-cran-mass (= 7.3-60-2), r-cran-matrix (= 1.6-0-1), r-cran-memoise (= 2.0.1-1), r-cran-mgcv (= 1.9-0-1), r-cran-mime (= 0.12-1), r-cran-munsell (= 0.5.0-2build1), r-cran-nlme (= 3.1.162-1), r-cran-pillar (= 1.9.0+dfsg-1), r-cran-pkgconfig (= 2.0.3-2build1), r-cran-pkgkitten (= 0.2.3-1), r-cran-png (= 0.1-8-1), r-cran-promises (= 1.2.0.1+dfsg-1), r-cran-r6 (= 2.5.1-1), r-cran-rappdirs (= 0.3.3-1), r-cran-rcolorbrewer (= 1.1-3-1build1), r-cran-rcpp (= 1.0.11-1), r-cran-rcurl (= 1.98-1.12+dfsg-1), r-cran-rjson (= 0.2.21-1), r-cran-rlang (= 1.1.1-1), r-cran-rmarkdown (= 2.22+dfsg-1), r-cran-rsvg (= 2.4.0-1), r-cran-runit (= 0.4.32-3), r-cran-sass (= 0.4.6+dfsg-1), r-cran-scales (= 1.2.1-1), r-cran-shiny (= 1.7.4+dfsg-3), r-cran-sourcetools (= 0.1.7-1-1), r-cran-stringi (= 1.7.12-1build1), r-cran-stringr (= 1.5.0-1), r-cran-tibble (= 3.2.1+dfsg-2), r-cran-tinytex (= 0.45-1), r-cran-utf8 (= 1.2.3-1), r-cran-vctrs (= 0.6.3-1), r-cran-viridislite (= 0.4.2-2), r-cran-withr (= 2.5.0-1), r-cran-xfun (= 0.39+dfsg-1), r-cran-xtable (= 1:1.8-4-2), r-cran-yaml (= 2.3.7-1), readline-common (= 8.2-1.3), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.9-1), sensible-utils (= 0.0.20), shared-mime-info (= 2.2-1), sysvinit-utils (= 3.06-4ubuntu1), tar (= 1.34+dfsg-1.2ubuntu1), tzdata (= 2023c-7ubuntu1), ucf (= 3.0043+nmu1), unzip (= 6.0-28ubuntu1), util-linux (= 2.38.1-5ubuntu2), util-linux-extra (= 2.38.1-5ubuntu2), x11-common (= 1:7.7+23ubuntu2), xauth (= 1:1.1.2-1), xdg-utils (= 1.1.3-4.1ubuntu3), xz-utils (= 5.4.1-0.2), zip (= 3.0-13), zlib1g (= 1:1.2.13.dfsg-1ubuntu4), zlib1g-dev (= 1:1.2.13.dfsg-1ubuntu4) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1689913734" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-bioc-fmcsr_1.42.0+dfsg-1_armhf.deb ------------------------------------ new Debian package, version 2.0. size 229782 bytes: control archive=1796 bytes. 1242 bytes, 23 lines control 2382 bytes, 31 lines md5sums Package: r-bioc-fmcsr Version: 1.42.0+dfsg-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian R Packages Maintainers Installed-Size: 360 Depends: r-api-4.0, r-api-bioc-3.17, r-bioc-chemminer, r-cran-runit, r-bioc-biocgenerics, libc6 (>= 2.4), libgcc-s1 (>= 3.5), libstdc++6 (>= 13.1) Suggests: r-bioc-biocstyle, r-cran-knitr, r-cran-rmarkdown Section: gnu-r Priority: optional Homepage: https://bioconductor.org/packages/fmcsR/ Description: GNU R mismatch tolerant maximum common substructure searching The fmcsR package introduces an efficient maximum common substructure (MCS) algorithms combined with a novel matching strategy that allows for atom and/or bond mismatches in the substructures shared among two small molecules. The resulting flexible MCSs (FMCSs) are often larger than strict MCSs, resulting in the identification of more common features in their source structures, as well as a higher sensitivity in finding compounds with weak structural similarities. The fmcsR package provides several utilities to use the FMCS algorithm for pairwise compound comparisons, structure similarity searching and clustering. drwxr-xr-x root/root 0 2023-07-21 04:28 ./ drwxr-xr-x root/root 0 2023-07-21 04:28 ./usr/ drwxr-xr-x root/root 0 2023-07-21 04:28 ./usr/lib/ drwxr-xr-x root/root 0 2023-07-21 04:28 ./usr/lib/R/ drwxr-xr-x root/root 0 2023-07-21 04:28 ./usr/lib/R/site-library/ drwxr-xr-x root/root 0 2023-07-21 04:28 ./usr/lib/R/site-library/fmcsR/ -rw-r--r-- root/root 86 2023-07-21 04:28 ./usr/lib/R/site-library/fmcsR/CITATION -rw-r--r-- root/root 1763 2023-07-21 04:28 ./usr/lib/R/site-library/fmcsR/DESCRIPTION -rw-r--r-- root/root 324 2023-07-21 04:28 ./usr/lib/R/site-library/fmcsR/INDEX drwxr-xr-x root/root 0 2023-07-21 04:28 ./usr/lib/R/site-library/fmcsR/Meta/ -rw-r--r-- root/root 540 2023-07-21 04:28 ./usr/lib/R/site-library/fmcsR/Meta/Rd.rds -rw-r--r-- root/root 121 2023-07-21 04:28 ./usr/lib/R/site-library/fmcsR/Meta/data.rds -rw-r--r-- root/root 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./usr/lib/R/site-library/fmcsR/R/fmcsR.rdx drwxr-xr-x root/root 0 2023-07-21 04:28 ./usr/lib/R/site-library/fmcsR/data/ -rw-r--r-- root/root 4205 2023-07-21 04:28 ./usr/lib/R/site-library/fmcsR/data/fmcstest.rda drwxr-xr-x root/root 0 2023-07-21 04:28 ./usr/lib/R/site-library/fmcsR/doc/ -rw-r--r-- root/root 4598 2023-07-21 04:28 ./usr/lib/R/site-library/fmcsR/doc/fmcsR.R -rw-r--r-- root/root 10924 2023-07-21 04:28 ./usr/lib/R/site-library/fmcsR/doc/fmcsR.Rmd -rw-r--r-- root/root 1350 2023-07-21 04:28 ./usr/lib/R/site-library/fmcsR/doc/index.html drwxr-xr-x root/root 0 2023-07-21 04:28 ./usr/lib/R/site-library/fmcsR/help/ -rw-r--r-- root/root 362 2023-07-21 04:28 ./usr/lib/R/site-library/fmcsR/help/AnIndex -rw-r--r-- root/root 219 2023-07-21 04:28 ./usr/lib/R/site-library/fmcsR/help/aliases.rds -rw-r--r-- root/root 16309 2023-07-21 04:28 ./usr/lib/R/site-library/fmcsR/help/fmcsR.rdb -rw-r--r-- root/root 319 2023-07-21 04:28 ./usr/lib/R/site-library/fmcsR/help/fmcsR.rdx -rw-r--r-- 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./usr/share/doc/r-bioc-fmcsr/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: any Build-Space: 2440 Build-Time: 25 Distribution: mantic-proposed Host Architecture: armhf Install-Time: 35 Job: r-bioc-fmcsr_1.42.0+dfsg-1.dsc Machine Architecture: arm64 Package: r-bioc-fmcsr Package-Time: 62 Source-Version: 1.42.0+dfsg-1 Space: 2440 Status: successful Version: 1.42.0+dfsg-1 -------------------------------------------------------------------------------- Finished at 2023-07-21T11:47:43Z Build needed 00:01:02, 2440k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=mantic --arch=armhf PACKAGEBUILD-26439521 Scanning for processes to kill in build PACKAGEBUILD-26439521