https://launchpad.net/ubuntu/+source/r-bioc-fmcsr/1.42.0+dfsg1-1/+build/26922041 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lcy02-amd64-063 5.4.0-164-generic #181-Ubuntu SMP Fri Sep 1 13:41:22 UTC 2023 x86_64 Buildd toolchain package versions: launchpad-buildd_235~645~ubuntu20.04.1 python3-lpbuildd_235~645~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 26 Oct 22:04:25 ntpdate[1879]: adjust time server 10.131.248.1 offset 0.000355 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-26922041 --image-type chroot /home/buildd/filecache-default/1fe94ca8758119221c8de2550665a1bb335bd6a9 Creating target for build PACKAGEBUILD-26922041 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-26922041 Starting target for build PACKAGEBUILD-26922041 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-26922041 'deb http://ftpmaster.internal/ubuntu noble main universe' 'deb http://ftpmaster.internal/ubuntu noble-security main universe' 'deb http://ftpmaster.internal/ubuntu noble-updates main universe' 'deb http://ftpmaster.internal/ubuntu noble-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-26922041 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-26922041 Updating target for build PACKAGEBUILD-26922041 Get:1 http://ftpmaster.internal/ubuntu noble InRelease [213 kB] Get:2 http://ftpmaster.internal/ubuntu noble-security InRelease [74.9 kB] Get:3 http://ftpmaster.internal/ubuntu noble-updates InRelease [74.9 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease [74.9 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 Packages [1405 kB] Get:6 http://ftpmaster.internal/ubuntu noble/universe amd64 Packages [15.2 MB] Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [199 kB] Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main Translation-en [77.6 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [595 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe Translation-en [325 kB] Fetched 18.2 MB in 3s (5843 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt apt-utils base-passwd bash-completion cpp-13 debianutils diffutils g++-13 gcc-13 gcc-13-base grep libapt-pkg6.0 libasan8 libatomic1 libc-bin libc-dev-bin libc6 libc6-dev libcc1-0 libgcc-13-dev libgcc-s1 libgomp1 libhwasan0 libitm1 liblsan0 liblzma5 libncursesw6 libpng16-16 libquadmath0 libsqlite3-0 libssl3 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libtsan2 libubsan1 libudev1 libxxhash0 libzstd1 mawk ncurses-base ncurses-bin openssl optipng systemd systemd-dev systemd-sysv xz-utils 50 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 79.9 MB of archives. After this operation, 59.4 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 debianutils amd64 5.14 [89.0 kB] Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 diffutils amd64 1:3.10-1 [176 kB] Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 grep amd64 3.11-3 [161 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 ncurses-bin amd64 6.4+20231016-1 [186 kB] Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libc6-dev amd64 2.38-3ubuntu1 [2114 kB] Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libc-dev-bin amd64 2.38-3ubuntu1 [20.3 kB] Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libubsan1 amd64 13.2.0-6ubuntu1 [1105 kB] Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 gcc-13-base amd64 13.2.0-6ubuntu1 [44.3 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libgcc-s1 amd64 13.2.0-6ubuntu1 [62.4 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libgomp1 amd64 13.2.0-6ubuntu1 [142 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libitm1 amd64 13.2.0-6ubuntu1 [29.3 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libatomic1 amd64 13.2.0-6ubuntu1 [10.4 kB] Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libasan8 amd64 13.2.0-6ubuntu1 [2835 kB] Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 liblsan0 amd64 13.2.0-6ubuntu1 [1203 kB] Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libhwasan0 amd64 13.2.0-6ubuntu1 [1262 kB] Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libquadmath0 amd64 13.2.0-6ubuntu1 [153 kB] Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 cpp-13 amd64 13.2.0-6ubuntu1 [10.7 MB] Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libcc1-0 amd64 13.2.0-6ubuntu1 [48.1 kB] Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libstdc++-13-dev amd64 13.2.0-6ubuntu1 [2351 kB] Get:20 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 g++-13 amd64 13.2.0-6ubuntu1 [12.1 MB] Get:21 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 gcc-13 amd64 13.2.0-6ubuntu1 [21.5 MB] Get:22 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libgcc-13-dev amd64 13.2.0-6ubuntu1 [2686 kB] Get:23 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libtsan2 amd64 13.2.0-6ubuntu1 [2606 kB] Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libstdc++6 amd64 13.2.0-6ubuntu1 [771 kB] Get:25 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libzstd1 amd64 1.5.5+dfsg2-2 [297 kB] Get:26 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libc6 amd64 2.38-3ubuntu1 [3248 kB] Get:27 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 base-passwd amd64 3.6.2 [51.2 kB] Get:28 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libc-bin amd64 2.38-3ubuntu1 [680 kB] Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 ncurses-base all 6.4+20231016-1 [24.7 kB] Get:30 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 liblzma5 amd64 5.4.4-0.1 [127 kB] Get:31 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libssl3 amd64 3.0.10-1ubuntu2.1 [1930 kB] Get:32 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 systemd-sysv amd64 253.5-1ubuntu7 [11.5 kB] Get:33 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 systemd-dev all 253.5-1ubuntu7 [78.5 kB] Get:34 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 systemd amd64 253.5-1ubuntu7 [3060 kB] Get:35 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libsystemd-shared amd64 253.5-1ubuntu7 [1871 kB] Get:36 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libsystemd0 amd64 253.5-1ubuntu7 [407 kB] Get:37 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libudev1 amd64 253.5-1ubuntu7 [159 kB] Get:38 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libxxhash0 amd64 0.8.2-2 [25.5 kB] Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libapt-pkg6.0 amd64 2.7.6 [948 kB] Get:40 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 apt amd64 2.7.6 [1373 kB] Get:41 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 apt-utils amd64 2.7.6 [216 kB] Get:42 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libncursesw6 amd64 6.4+20231016-1 [147 kB] Get:43 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libtinfo6 amd64 6.4+20231016-1 [107 kB] Get:44 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 mawk amd64 1.3.4.20230808-1 [125 kB] Get:45 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libsqlite3-0 amd64 3.43.2-1 [679 kB] Get:46 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 openssl amd64 3.0.10-1ubuntu2.1 [1188 kB] Get:47 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 bash-completion all 1:2.11-8 [180 kB] Get:48 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libpng16-16 amd64 1.6.40-2 [186 kB] Get:49 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 xz-utils amd64 5.4.4-0.1 [268 kB] Get:50 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 optipng amd64 0.7.7-3 [83.3 kB] Preconfiguring packages ... Fetched 79.9 MB in 1s (59.2 MB/s) (Reading database ... 13648 files and directories currently installed.) Preparing to unpack .../debianutils_5.14_amd64.deb ... Unpacking debianutils (5.14) over (5.8-1) ... Setting up debianutils (5.14) ... (Reading database ... 13647 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.10-1_amd64.deb ... Unpacking diffutils (1:3.10-1) over (1:3.8-4) ... Setting up diffutils (1:3.10-1) ... (Reading database ... 13647 files and directories currently installed.) Preparing to unpack .../archives/grep_3.11-3_amd64.deb ... Unpacking grep (3.11-3) over (3.11-2) ... Setting up grep (3.11-3) ... (Reading database ... 13647 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.4+20231016-1_amd64.deb ... Unpacking ncurses-bin (6.4+20231016-1) over (6.4+20230625-2) ... Setting up ncurses-bin (6.4+20231016-1) ... (Reading database ... 13647 files and directories currently installed.) 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Setting up liblsan0:amd64 (13.2.0-6ubuntu1) ... Setting up libitm1:amd64 (13.2.0-6ubuntu1) ... Setting up systemd (253.5-1ubuntu7) ... Initializing machine ID from random generator. Setting up optipng (0.7.7-3) ... Setting up libgcc-13-dev:amd64 (13.2.0-6ubuntu1) ... Setting up libc6-dev:amd64 (2.38-3ubuntu1) ... Setting up libstdc++-13-dev:amd64 (13.2.0-6ubuntu1) ... Setting up systemd-sysv (253.5-1ubuntu7) ... Setting up gcc-13 (13.2.0-6ubuntu1) ... Setting up g++-13 (13.2.0-6ubuntu1) ... Processing triggers for libc-bin (2.38-3ubuntu1) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-26922041 amd64 noble-proposed -c chroot:build-PACKAGEBUILD-26922041 --arch=amd64 --dist=noble-proposed --nolog -A r-bioc-fmcsr_1.42.0+dfsg1-1.dsc Initiating build PACKAGEBUILD-26922041 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-164-generic #181-Ubuntu SMP Fri Sep 1 13:41:22 UTC 2023 x86_64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on lcy02-amd64-063.buildd +==============================================================================+ | r-bioc-fmcsr 1.42.0+dfsg1-1 (amd64) Thu, 26 Oct 2023 22:04:47 +0000 | +==============================================================================+ Package: r-bioc-fmcsr Version: 1.42.0+dfsg1-1 Source Version: 1.42.0+dfsg1-1 Distribution: noble-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-26922041/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-fmcsr-sSvumB/resolver-uJoY6L' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-bioc-fmcsr_1.42.0+dfsg1-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/r-bioc-fmcsr-sSvumB/r-bioc-fmcsr-1.42.0+dfsg1' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-fmcsr-sSvumB' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-chemminer, r-cran-runit, r-bioc-biocgenerics, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-chemminer, r-cran-runit, r-bioc-biocgenerics, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [407 B] Get:5 copy:/<>/apt_archive ./ Packages [490 B] Fetched 1854 B in 0s (173 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils bash-completion debconf-i18n krb5-locales libgpg-error-l10n libgpm2 liblocale-gettext-perl libnss-nis libnss-nisplus libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev dctrl-tools debhelper debugedit dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax fonts-noto-core fonts-noto-mono gettext gettext-base gfortran gfortran-13 groff-base icu-devtools intltool-debian javascript-common libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libboost1.81-dev libbrotli1 libbsd0 libbz2-dev libcairo-gobject2 libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libclone-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdw1 libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran-13-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu72 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 libldap2 liblerc4 liblua5.3-0 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses6 libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpsl5 libreadline-dev librsvg2-2 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff6 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libuv1 libvariable-magic-perl libwebp7 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 libyaml-0-2 m4 man-db node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data pkg-config pkgconf pkgconf-bin po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-chemminer r-cran-base64enc r-cran-bh r-cran-bitops r-cran-bslib r-cran-cachem r-cran-cli r-cran-colorspace r-cran-commonmark r-cran-crayon r-cran-crosstalk r-cran-dbi r-cran-digest r-cran-dt r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fontawesome r-cran-fs r-cran-ggplot2 r-cran-glue r-cran-gridextra r-cran-gtable r-cran-highr r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-png r-cran-promises r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsvg r-cran-runit r-cran-sass r-cran-scales r-cran-shiny r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-tibble r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml shared-mime-info ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc debtags dh-make postgresql-client-common gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-13-multilib gfortran-13-doc libcoarrays-dev groff apache2 | lighttpd | httpd liblapack-doc libboost1.81-doc libboost-atomic1.81-dev libboost-chrono1.81-dev libboost-container1.81-dev libboost-context1.81-dev libboost-contract1.81-dev libboost-coroutine1.81-dev libboost-date-time1.81-dev libboost-exception1.81-dev libboost-fiber1.81-dev libboost-filesystem1.81-dev libboost-graph1.81-dev libboost-graph-parallel1.81-dev libboost-iostreams1.81-dev libboost-locale1.81-dev libboost-log1.81-dev libboost-math1.81-dev libboost-mpi1.81-dev libboost-mpi-python1.81-dev libboost-numpy1.81-dev libboost-program-options1.81-dev libboost-python1.81-dev libboost-random1.81-dev libboost-regex1.81-dev libboost-serialization1.81-dev libboost-stacktrace1.81-dev libboost-system1.81-dev libboost-test1.81-dev libboost-thread1.81-dev libboost-timer1.81-dev libboost-type-erasure1.81-dev libboost-wave1.81-dev libboost1.81-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.81-dev low-memory-monitor libio-compress-brotli-perl icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix libjs-mathjax-doc liblzma-doc ncurses-doc libscalar-number-perl readline-doc librsvg2-bin tcl8.6 tk8.6 libtool-doc gcj-jdk libbusiness-isbn-perl libregexp-ipv6-perl libwww-perl libcurl4-gnutls-dev m4-doc apparmor less www-browser nodejs texlive-latex-recommended texlive-xetex texlive-luatex pandoc-citeproc texlive-latex-extra context wkhtmltopdf ghc php python ruby libjs-katex citation-style-language-styles libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo r-bioc-biobase r-bioc-s4vectors r-bioc-iranges r-bioc-genomicranges r-bioc-delayedarray r-bioc-biostrings r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-rsqlite r-cran-scatterplot3d r-cran-gplots r-bioc-fmcsr r-cran-snow r-cran-rpostgresql r-bioc-biocstyle r-cran-biocmanager r-cran-bibtex r-cran-callr r-cran-covr r-cran-processx r-cran-ps r-cran-rprojroot r-cran-rstudioapi r-cran-whoami r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-dplyr r-cran-jpeg r-cran-viridis r-cran-curl r-cran-testthat r-cran-xml2 r-cran-rmysql r-cran-future r-cran-testit r-cran-unitizer r-cran-profvis r-cran-rgeos r-cran-forcats r-cran-r.utils r-cran-waldo r-cran-markdown r-cran-cairo r-cran-ragg r-cran-magick r-cran-sf r-cran-httr r-cran-r.rsp r-cran-lintr r-cran-tidyverse r-cran-getopt r-cran-bit64 r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-survival r-cran-units r-cran-vdiffr r-cran-purrr r-cran-roxygen2 r-cran-inline r-cran-xml r-cran-usethis r-cran-spelling r-cran-svglite r-cran-dichromat r-cran-bench r-cran-blob r-cran-brio r-cran-here r-cran-hms r-cran-pkgbuild r-cran-pkgload r-cran-tidyr r-cran-pkgdown r-cran-zeallot r-cran-codetools r-cran-remotes r-cran-plm r-cran-zoo Recommended packages: devscripts cme git-buildpackage curl | wget | lynx bzip2-doc libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl libgdk-pixbuf2.0-bin libglib2.0-data xdg-user-dirs node-jquery libldap-common libdevel-partialdump-perl libpng-tools publicsuffix librsvg2-common libsasl2-modules libltdl-dev libmail-sendmail-perl r-recommended r-doc-html r-cran-thematic r-cran-testthat r-cran-curl r-cran-mockery r-cran-covr r-cran-dplyr r-cran-spelling r-cran-ragg r-cran-hexbin r-cran-hmisc r-cran-interp r-cran-mapproj r-cran-maps r-cran-maptools r-cran-multcomp r-cran-quantreg r-cran-rpart r-cran-sf r-cran-svglite r-cran-vdiffr r-cran-xml2 r-cran-testit r-cran-markdown r-cran-sp r-cran-codetools r-cran-formatr r-cran-gridsvg r-cran-jpeg r-cran-magick r-cran-reticulate r-cran-rgl r-cran-tikzdevice r-cran-webshot r-cran-rstudioapi node-highlight.js r-cran-lubridate r-cran-future r-cran-dygraphs r-cran-rsconnect r-cran-downlit r-cran-bit64 r-cran-hms r-cran-cairo r-cran-data.table r-cran-rsqlite r-cran-mockr r-cran-formattable r-cran-generics r-cran-waldo libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev dctrl-tools debhelper debugedit dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax fonts-noto-core fonts-noto-mono gettext gettext-base gfortran gfortran-13 groff-base icu-devtools intltool-debian javascript-common libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libboost1.81-dev libbrotli1 libbsd0 libbz2-dev libcairo-gobject2 libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libclone-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdw1 libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran-13-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu72 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 libldap2 liblerc4 liblua5.3-0 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses6 libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpsl5 libreadline-dev librsvg2-2 librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff6 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libuv1 libvariable-magic-perl libwebp7 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 libyaml-0-2 m4 man-db node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data pkg-config pkgconf pkgconf-bin po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-chemminer r-cran-base64enc r-cran-bh r-cran-bitops r-cran-bslib r-cran-cachem r-cran-cli r-cran-colorspace r-cran-commonmark r-cran-crayon r-cran-crosstalk r-cran-dbi r-cran-digest r-cran-dt r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fontawesome r-cran-fs r-cran-ggplot2 r-cran-glue r-cran-gridextra r-cran-gtable r-cran-highr r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-png r-cran-promises r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsvg r-cran-runit r-cran-sass r-cran-scales r-cran-shiny r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-tibble r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml sbuild-build-depends-main-dummy shared-mime-info ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 284 newly installed, 0 to remove and 0 not upgraded. Need to get 211 MB of archives. After this operation, 847 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [702 B] Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 libbsd0 amd64 0.11.7-4 [41.4 kB] Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libelf1 amd64 0.189-4 [56.3 kB] Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libexpat1 amd64 2.5.0-2 [85.2 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libfribidi0 amd64 1.0.13-3 [26.1 kB] Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libglib2.0-0 amd64 2.78.1-1 [1526 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libicu72 amd64 72.1-3ubuntu3 [10.8 MB] Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libxml2 amd64 2.9.14+dfsg-1.3 [764 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libyaml-0-2 amd64 0.2.5-1 [52.8 kB] Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 shared-mime-info amd64 2.2-1 [459 kB] Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 ucf all 3.0043+nmu1 [56.5 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libmagic-mgc amd64 1:5.45-2 [307 kB] Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libmagic1 amd64 1:5.45-2 [86.1 kB] Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 file amd64 1:5.45-2 [21.9 kB] Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 gettext-base amd64 0.21-13 [38.1 kB] Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libuchardet0 amd64 0.0.7-1build2 [76.9 kB] Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 groff-base amd64 1.23.0-3 [1023 kB] Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libncurses6 amd64 6.4+20231016-1 [112 kB] Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libnghttp2-14 amd64 1.57.0-1 [73.1 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libpipeline1 amd64 1.5.7-1 [23.3 kB] Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libpsl5 amd64 0.21.2-1 [59.0 kB] Get:22 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libuv1 amd64 1.46.0-2 [96.0 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libxau6 amd64 1:1.0.9-1build5 [7634 B] Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libxdmcp6 amd64 1:1.1.3-0ubuntu5 [10.9 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb1 amd64 1.15-1 [48.0 kB] Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 libx11-data all 2:1.8.6-1ubuntu1 [116 kB] Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 libx11-6 amd64 2:1.8.6-1ubuntu1 [644 kB] Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 libxext6 amd64 2:1.3.4-1build1 [31.8 kB] Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libxmuu1 amd64 2:1.1.3-3 [10.2 kB] Get:30 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 man-db amd64 2.12.0-1 [1229 kB] Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 xauth amd64 1:1.1.2-1 [25.8 kB] Get:32 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 m4 amd64 1.4.19-4 [243 kB] Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 autoconf all 2.71-3 [339 kB] Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 autotools-dev all 20220109.1 [44.9 kB] Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 automake all 1:1.16.5-1.3 [558 kB] Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 autopoint all 0.21-13 [422 kB] Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] Get:38 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libdebhelper-perl all 13.11.7ubuntu1 [85.8 kB] Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libtool all 2.4.7-7 [166 kB] Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 dh-autoreconf all 20 [16.1 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 libsub-override-perl all 0.09-4 [8706 B] Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 dh-strip-nondeterminism all 1.13.1-1 [5362 B] Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libdw1 amd64 0.189-4 [257 kB] Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 debugedit amd64 1:5.0-5 [46.1 kB] Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 dwz amd64 0.15-1 [112 kB] Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 gettext amd64 0.21-13 [866 kB] Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] Get:51 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 debhelper all 13.11.7ubuntu1 [940 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu1 [174 kB] Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.11.0-2build1 [237 kB] Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libbrotli1 amd64 1.0.9-2build8 [309 kB] Get:59 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libfreetype6 amd64 2.13.2+dfsg-1 [397 kB] Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-noto-mono all 20201225-2 [435 kB] Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-noto-core all 20201225-2 [13.3 MB] Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.14.2-4ubuntu1 [35.9 kB] Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.14.2-4ubuntu1 [136 kB] Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-3 [20.2 kB] Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-3 [53.4 kB] Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libldap2 amd64 2.6.6+dfsg-1~exp1ubuntu1 [193 kB] Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2build4 [58.2 kB] Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libssh-4 amd64 0.10.5-3ubuntu1 [187 kB] Get:74 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libcurl4 amd64 8.2.1-1ubuntu3.1 [319 kB] Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] Get:77 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libgfortran5 amd64 13.2.0-6ubuntu1 [891 kB] Get:78 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.11.0-2build1 [2623 kB] Get:79 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.14.2-4ubuntu1 [180 kB] Get:80 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-1build2 [71.3 kB] Get:81 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.0.1-1 [456 kB] Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-1build1 [162 kB] Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-2 [19.9 kB] Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-1build1 [19.2 kB] Get:85 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-2 [228 kB] Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-2 [42.4 kB] Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-2 [29.2 kB] Get:88 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.18-1 [43.1 kB] Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-2ubuntu2 [185 kB] Get:92 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libsharpyuv0 amd64 1.3.2-0.3 [15.5 kB] Get:93 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libwebp7 amd64 1.3.2-0.3 [230 kB] Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-1ubuntu1 [199 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] Get:102 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.1-4 [27.0 MB] Get:103 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libgfortran-13-dev amd64 13.2.0-6ubuntu1 [941 kB] Get:104 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 gfortran-13 amd64 13.2.0-6ubuntu1 [11.4 MB] Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-1ubuntu1 [1184 B] Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.11.0-2build1 [170 kB] Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.11.0-2build1 [5104 kB] Get:108 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libncurses-dev amd64 6.4+20231016-1 [383 kB] Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-1.3 [167 kB] Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4 [211 kB] Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4 [198 kB] Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4 [6746 B] Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4 [743 kB] Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1ubuntu5 [895 kB] Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libpng-dev amd64 1.6.40-2 [264 kB] Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5build1 [32.5 kB] Get:120 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 liblzma-dev amd64 5.4.4-0.1 [177 kB] Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 72.1-3ubuntu3 [211 kB] Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 72.1-3ubuntu3 [11.8 MB] Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] Get:127 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.1-4 [4332 B] Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 libfile-which-perl all 1.27-2 [12.5 kB] Get:129 http://ftpmaster.internal/ubuntu noble/universe amd64 libswitch-perl all 2.17-3 [18.9 kB] Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libclone-perl amd64 0.46-1 [10.9 kB] Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 libencode-locale-perl all 1.05-3 [11.6 kB] Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 libtimedate-perl all 2.3300-2 [34.0 kB] Get:133 http://ftpmaster.internal/ubuntu noble/main amd64 libhttp-date-perl all 6.05-2 [9946 B] Get:134 http://ftpmaster.internal/ubuntu noble/main amd64 libio-html-perl all 1.004-3 [15.9 kB] Get:135 http://ftpmaster.internal/ubuntu noble/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.1 kB] Get:136 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 liburi-perl all 5.21-1 [85.4 kB] Get:137 http://ftpmaster.internal/ubuntu noble/main amd64 libhttp-message-perl all 6.44-2ubuntu1 [78.0 kB] Get:138 http://ftpmaster.internal/ubuntu noble/main amd64 libparams-util-perl amd64 1.102-2 [21.5 kB] Get:139 http://ftpmaster.internal/ubuntu noble/main amd64 libsub-install-perl all 0.929-1 [9764 B] Get:140 http://ftpmaster.internal/ubuntu noble/main amd64 libdata-optlist-perl all 0.114-1 [9708 B] Get:141 http://ftpmaster.internal/ubuntu noble/main amd64 libb-hooks-op-check-perl amd64 0.22-2build1 [9600 B] Get:142 http://ftpmaster.internal/ubuntu noble/main amd64 libdynaloader-functions-perl all 0.003-3 [12.1 kB] Get:143 http://ftpmaster.internal/ubuntu noble/main amd64 libdevel-callchecker-perl amd64 0.008-2 [13.9 kB] Get:144 http://ftpmaster.internal/ubuntu noble/main amd64 libparams-classify-perl amd64 0.015-2build2 [20.7 kB] Get:145 http://ftpmaster.internal/ubuntu noble/main amd64 libmodule-runtime-perl all 0.016-2 [16.4 kB] Get:146 http://ftpmaster.internal/ubuntu noble/main amd64 libtry-tiny-perl all 0.31-2 [20.8 kB] Get:147 http://ftpmaster.internal/ubuntu noble/main amd64 libmodule-implementation-perl all 0.09-2 [12.0 kB] Get:148 http://ftpmaster.internal/ubuntu noble/main amd64 libpackage-stash-perl all 0.40-1 [19.5 kB] Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 libclass-load-perl all 0.25-2 [12.7 kB] Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 libclass-load-xs-perl amd64 0.10-2build1 [13.5 kB] Get:151 http://ftpmaster.internal/ubuntu noble/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [6718 B] Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 libdevel-globaldestruction-perl all 0.14-4 [6114 B] Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 libalgorithm-c3-perl all 0.11-2 [10.2 kB] Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 libclass-c3-perl all 0.35-2 [18.4 kB] Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 libmro-compat-perl all 0.15-2 [10.1 kB] Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 libdevel-overloadinfo-perl all 0.007-1 [7422 B] Get:157 http://ftpmaster.internal/ubuntu noble/main amd64 libdevel-stacktrace-perl all 2.0400-2 [22.2 kB] Get:158 http://ftpmaster.internal/ubuntu noble/main amd64 libsub-exporter-perl all 0.990-1 [49.0 kB] Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 libeval-closure-perl all 0.14-3 [10.1 kB] Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 libdist-checkconflicts-perl all 0.11-2 [9942 B] Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 libmodule-runtime-conflicts-perl all 0.003-2 [6956 B] Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 libpackage-deprecationmanager-perl all 0.18-1 [16.7 kB] Get:163 http://ftpmaster.internal/ubuntu noble/main amd64 libpackage-stash-xs-perl amd64 0.30-1build1 [19.0 kB] Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 libmoose-perl amd64 2.2206-1 [749 kB] Get:165 http://ftpmaster.internal/ubuntu noble/main amd64 libvariable-magic-perl amd64 0.63-1 [35.0 kB] Get:166 http://ftpmaster.internal/ubuntu noble/main amd64 libb-hooks-endofscope-perl all 0.26-1 [17.8 kB] Get:167 http://ftpmaster.internal/ubuntu noble/main amd64 libsub-identify-perl amd64 0.14-3 [9928 B] Get:168 http://ftpmaster.internal/ubuntu noble/main amd64 libsub-name-perl amd64 0.27-1 [11.0 kB] Get:169 http://ftpmaster.internal/ubuntu noble/main amd64 libnamespace-clean-perl all 0.27-2 [14.0 kB] Get:170 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libcurl3-gnutls amd64 8.2.1-1ubuntu3.1 [312 kB] Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 libwww-curl-perl amd64 4.17-10 [56.2 kB] Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 libwww-curl-simple-perl all 0.100191-3 [11.2 kB] Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 dh-r all 20230707ubuntu1 [39.1 kB] Get:174 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] Get:176 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] Get:177 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] Get:178 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 libboost1.81-dev amd64 1.81.0-7 [10.5 MB] Get:179 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo-gobject2 amd64 1.18.0-1 [127 kB] Get:180 http://ftpmaster.internal/ubuntu noble/main amd64 libgdk-pixbuf2.0-common all 2.42.10+dfsg-1build1 [5496 B] Get:181 http://ftpmaster.internal/ubuntu noble/main amd64 libgdk-pixbuf-2.0-0 amd64 2.42.10+dfsg-1build1 [146 kB] Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] Get:188 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 liblua5.3-0 amd64 5.3.6-2 [139 kB] Get:198 http://ftpmaster.internal/ubuntu noble/main amd64 librsvg2-2 amd64 2.54.7+dfsg-2 [2960 kB] Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 2.17.1.1-3ubuntu1 [82.9 kB] Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 2.17.1.1-3ubuntu1 [23.2 MB] Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.46.0-1 [591 kB] Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.18-2 [92.7 kB] Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rjson amd64 0.2.21-1 [143 kB] Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.12+dfsg-1 [793 kB] Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.1.3-1 [686 kB] Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.33-1 [185 kB] Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.11-1 [1975 kB] Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.1-1 [1319 kB] Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.6.2-1 [148 kB] Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.1-1 [1656 kB] Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.3+dfsg-1 [109 kB] Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gtable all 0.3.3+dfsg-1 [192 kB] Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mass amd64 7.3-60-2 [1119 kB] Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.21-8-2 [1326 kB] Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nlme amd64 3.1.163-1 [2265 kB] Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-1-1 [3865 kB] Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mgcv amd64 1.9-0-1 [3200 kB] Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-farver amd64 2.1.1-1 [1353 kB] Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-labeling all 0.4.2-1 [62.6 kB] Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1541 kB] Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-munsell all 0.5.0-2build1 [208 kB] Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-scales all 1.2.1-1 [544 kB] Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.4-1 [618 kB] Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.3-1 [140 kB] Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.3-1 [1333 kB] Get:236 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] Get:238 http://ftpmaster.internal/ubuntu 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[122 kB] Get:268 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.0.1+dfsg-1 [273 kB] Get:269 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.11+dfsg-1 [500 kB] Get:270 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] Get:271 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] Get:272 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] Get:273 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.0-1 [130 kB] Get:274 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] Get:275 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.7.4.1+dfsg-1 [2766 kB] Get:276 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.23+dfsg-1 [1470 kB] Get:277 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Fetched 211 MB in 4s (53.8 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 13639 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.11.7-4_amd64.deb ... Unpacking libbsd0:amd64 (0.11.7-4) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../001-libelf1_0.189-4_amd64.deb ... Unpacking libelf1:amd64 (0.189-4) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../002-libexpat1_2.5.0-2_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-2) ... Selecting previously unselected package libfribidi0:amd64. Preparing to unpack .../003-libfribidi0_1.0.13-3_amd64.deb ... Unpacking libfribidi0:amd64 (1.0.13-3) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../004-libglib2.0-0_2.78.1-1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.78.1-1) ... Selecting previously unselected package libicu72:amd64. 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Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up xdg-utils (1.1.3-4.1ubuntu3) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libldap2:amd64 (2.6.6+dfsg-1~exp1ubuntu1) ... Setting up liburi-perl (5.21-1) ... Setting up libblas-dev:amd64 (3.11.0-2build1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up dctrl-tools (2.24-3build2) ... Setting up libjs-bootstrap (3.4.1+dfsg-3) ... Setting up libbz2-dev:amd64 (1.0.8-5build1) ... Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... Setting up libjs-jquery-datatables-extensions (0.0+git20150910.28fd64e+dfsg-5) ... Setting up libjpeg8:amd64 (8c-2ubuntu11) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up r-cran-bh (1.81.0-1) ... Setting up libpaper1:amd64 (1.1.29) ... Creating config file /etc/papersize with new version Setting up libice6:amd64 (2:1.0.10-1build2) ... Setting up libhttp-date-perl (6.05-2) ... Setting up libdw1:amd64 (0.189-4) ... Setting up libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... Setting up libxdmcp6:amd64 (1:1.1.3-0ubuntu5) ... Setting up liblapack3:amd64 (3.11.0-2build1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libncurses-dev:amd64 (6.4+20231016-1) ... Setting up libxcb1:amd64 (1.15-1) ... Setting up gettext (0.21-13) ... Setting up libpcre2-dev:amd64 (10.42-4) ... Setting up libtool (2.4.7-7) ... 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Setting up liblapack-dev:amd64 (3.11.0-2build1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libdata-optlist-perl (0.114-1) ... Setting up pkg-config:amd64 (1.8.1-2) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up libtiff6:amd64 (4.5.1+git230720-1ubuntu1) ... Setting up debugedit (1:5.0-5) ... Setting up libcurl4:amd64 (8.2.1-1ubuntu3.1) ... Setting up libx11-6:amd64 (2:1.8.6-1ubuntu1) ... Setting up libgdk-pixbuf-2.0-0:amd64 (2.42.10+dfsg-1build1) ... Setting up libfontconfig1:amd64 (2.14.2-4ubuntu1) ... Setting up libmro-compat-perl (0.15-2) ... Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ... Setting up libsm6:amd64 (2:1.2.3-1build2) ... Setting up libxmuu1:amd64 (2:1.1.3-3) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (6.44-2ubuntu1) ... Setting up libeval-closure-perl (0.14-3) ... Setting up fontconfig (2.14.2-4ubuntu1) ... Regenerating fonts cache... done. Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libparams-classify-perl:amd64 (0.015-2build2) ... Setting up libpango-1.0-0:amd64 (1.51.0+ds-2) ... Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ... Setting up libxext6:amd64 (2:1.3.4-1build1) ... Setting up libwww-curl-perl:amd64 (4.17-10) ... Setting up man-db (2.12.0-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up gfortran (4:13.2.0-1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:amd64 (1.18.0-1) ... 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Setting up r-cran-runit (0.4.32-3) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-cran-gtable (0.3.3+dfsg-1) ... Setting up r-cran-later (1.3.1+dfsg-1) ... Setting up r-cran-matrix (1.6-1-1) ... Setting up r-cran-tinytex (0.45-1) ... Setting up r-cran-knitr (1.43+dfsg-2) ... Setting up r-cran-mgcv (1.9-0-1) ... Setting up r-cran-cachem (1.0.8-1) ... Setting up r-cran-rjson (0.2.21-1) ... Setting up r-cran-rcurl (1.98-1.12+dfsg-1) ... Setting up r-cran-vctrs (0.6.3-1) ... Setting up r-cran-pillar (1.9.0+dfsg-1) ... Setting up r-cran-ellipsis (0.3.2-2) ... Setting up r-cran-stringr (1.5.0-1) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up r-cran-munsell (0.5.0-2build1) ... Setting up r-cran-tibble (3.2.1+dfsg-2) ... Setting up r-cran-gridextra (2.3-3build1) ... Setting up r-cran-scales (1.2.1-1) ... Setting up r-cran-memoise (2.0.1-1) ... Setting up r-cran-promises (1.2.0.1+dfsg-1) ... Setting up r-cran-htmltools (0.5.5-1) ... 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Processing triggers for libc-bin (2.38-3ubuntu1) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-164-generic #181-Ubuntu SMP Fri Sep 1 13:41:22 UTC 2023 amd64 (x86_64) Toolchain package versions: binutils_2.41-5ubuntu1 dpkg-dev_1.22.0ubuntu1 g++-13_13.2.0-6ubuntu1 gcc-13_13.2.0-6ubuntu1 libc6-dev_2.38-3ubuntu1 libstdc++-13-dev_13.2.0-6ubuntu1 libstdc++6_13.2.0-6ubuntu1 linux-libc-dev_6.5.0-9.9 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 apt_2.7.6 apt-utils_2.7.6 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13 autotools-dev_20220109.1 base-files_13ubuntu3 base-passwd_3.6.2 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uuid-runtime_2.39.1-4ubuntu2 x11-common_1:7.7+23ubuntu2 xauth_1:1.1.2-1 xdg-utils_1.1.3-4.1ubuntu3 xz-utils_5.4.4-0.1 zip_3.0-13 zlib1g_1:1.2.13.dfsg-1ubuntu5 zlib1g-dev_1:1.2.13.dfsg-1ubuntu5 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-fmcsr Binary: r-bioc-fmcsr Architecture: any Version: 1.42.0+dfsg1-1 Maintainer: Debian R Packages Maintainers Uploaders: Andreas Tille Homepage: https://bioconductor.org/packages/fmcsR/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-fmcsr Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-fmcsr.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-chemminer, r-cran-runit, r-bioc-biocgenerics Package-List: r-bioc-fmcsr deb gnu-r optional 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Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-26922041 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-26922041 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-26922041 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -b -rfakeroot dpkg-buildpackage: info: source package r-bioc-fmcsr dpkg-buildpackage: info: source version 1.42.0+dfsg1-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R configure.ac:32: warning: AC_OUTPUT should be used without arguments. configure.ac:32: You should run autoupdate. dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-fmcsr/ -O--buildsystem=R I: R Package: fmcsR Version: 1.42.0 I: Building using R version 4.3.1-4 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Thu, 19 Oct 2023 16:19:26 +0200 mkdir -p /<>/r-bioc-fmcsr-1.42.0\+dfsg1/debian/r-bioc-fmcsr/usr/lib/R/site-library R CMD INSTALL -l /<>/r-bioc-fmcsr-1.42.0\+dfsg1/debian/r-bioc-fmcsr/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 19 Oct 2023 16:19:26 +0200'" * installing *source* package ‘fmcsR’ ... ** using staged installation checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ -std=gnu++17 accepts -g... yes checking for g++ -std=gnu++17 option to enable C++11 features... none needed checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for _Bool... yes checking for stdbool.h that conforms to C99... yes checking for inline... inline checking for size_t... yes checking for alarm... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating config.h ** libs using C++ compiler: ‘g++ (Ubuntu 13.2.0-6ubuntu1) 13.2.0’ make[1]: Entering directory '/<>/src' g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-T5jtMm/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/build/r-base-T5jtMm/r-base-4.3.1=/usr/src/r-base-4.3.1-4 -Wdate-time -D_FORTIFY_SOURCE=2 -c MCS.cpp -o MCS.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-T5jtMm/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/build/r-base-T5jtMm/r-base-4.3.1=/usr/src/r-base-4.3.1-4 -Wdate-time -D_FORTIFY_SOURCE=2 -c MCSCompound.cpp -o MCSCompound.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-T5jtMm/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/build/r-base-T5jtMm/r-base-4.3.1=/usr/src/r-base-4.3.1-4 -Wdate-time -D_FORTIFY_SOURCE=2 -c MCSMap.cpp -o MCSMap.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-T5jtMm/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/build/r-base-T5jtMm/r-base-4.3.1=/usr/src/r-base-4.3.1-4 -Wdate-time -D_FORTIFY_SOURCE=2 -c MCSRingDetector.cpp -o MCSRingDetector.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-T5jtMm/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/build/r-base-T5jtMm/r-base-4.3.1=/usr/src/r-base-4.3.1-4 -Wdate-time -D_FORTIFY_SOURCE=2 -c fmcs_R_wrap.cpp -o fmcs_R_wrap.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-T5jtMm/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/build/r-base-T5jtMm/r-base-4.3.1=/usr/src/r-base-4.3.1-4 -Wdate-time -D_FORTIFY_SOURCE=2 -c util.cpp -o util.o g++ -std=gnu++17 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -o fmcsR.so MCS.o MCSCompound.o MCSMap.o MCSRingDetector.o fmcs_R_wrap.o util.o -L/usr/lib/R/lib -lR make[1]: Leaving directory '/<>/src' make[1]: Entering directory '/<>/src' make[1]: Leaving directory '/<>/src' installing to /<>/debian/r-bioc-fmcsr/usr/lib/R/site-library/00LOCK-r-bioc-fmcsr-1.42.0+dfsg1/00new/fmcsR/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fmcsR) Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 299. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 301. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 302. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 305. W: Ignoring specified R dependency: R (>= 2.10.0) I: Using r-bioc-chemminer for Depends:ChemmineR I: Using r-bioc-biocstyle for Suggests:BiocStyle I: Using r-cran-knitr for Suggests:knitr W: Cannot find a debian package for Suggests:knitcitations W: Cannot find a debian package for Suggests:knitrBootstrap I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-cran-runit for Imports:RUnit I: Using r-bioc-chemminer for Imports:ChemmineR I: Using r-bioc-biocgenerics for Imports:BiocGenerics I: BioConductor API version: r-api-bioc-3.17 I: Use r-bioc-fmcsr as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R 47c951063b6bb377fb69b1412b39d7afb14eff83 dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing r-bioc-fmcsr (in debian/r-bioc-fmcsr); do_strip: , oemstrip: pkgstriptranslations: processing r-bioc-fmcsr-dbgsym (in debian/.debhelper/r-bioc-fmcsr/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-bioc-fmcsr/DEBIAN/control, package r-bioc-fmcsr, directory debian/r-bioc-fmcsr pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-bioc-fmcsr ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-bioc-fmcsr' in '../r-bioc-fmcsr_1.42.0+dfsg1-1_amd64.deb'. pkgstripfiles: processing control file: debian/.debhelper/r-bioc-fmcsr/dbgsym-root/DEBIAN/control, package r-bioc-fmcsr-dbgsym, directory debian/.debhelper/r-bioc-fmcsr/dbgsym-root dpkg-deb: building package 'r-bioc-fmcsr-dbgsym' in 'debian/.debhelper/scratch-space/build-r-bioc-fmcsr/r-bioc-fmcsr-dbgsym_1.42.0+dfsg1-1_amd64.deb'. Renaming r-bioc-fmcsr-dbgsym_1.42.0+dfsg1-1_amd64.deb to r-bioc-fmcsr-dbgsym_1.42.0+dfsg1-1_amd64.ddeb dpkg-genbuildinfo --build=binary -O../r-bioc-fmcsr_1.42.0+dfsg1-1_amd64.buildinfo dpkg-genchanges --build=binary -mLaunchpad Build Daemon -O../r-bioc-fmcsr_1.42.0+dfsg1-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-10-26T22:05:46Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-bioc-fmcsr_1.42.0+dfsg1-1_amd64.changes: ------------------------------------------ Format: 1.8 Date: Thu, 19 Oct 2023 16:19:26 +0200 Source: r-bioc-fmcsr Binary: r-bioc-fmcsr Built-For-Profiles: noudeb Architecture: amd64 Version: 1.42.0+dfsg1-1 Distribution: noble-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: r-bioc-fmcsr - GNU R mismatch tolerant maximum common substructure searching Closes: 1049116 Changes: r-bioc-fmcsr (1.42.0+dfsg1-1) unstable; urgency=medium . * Clean up some auto generated files Closes: #1049116 * Since we are removing some docs anyway we also drop auto generated files which make building package twice in a row harder than needed Checksums-Sha1: 8d46ef9b0c4ac7f9e72ea123347d2acf94450105 821014 r-bioc-fmcsr-dbgsym_1.42.0+dfsg1-1_amd64.ddeb f6d7686ee50cd5139fdc7fe5ef020c4d541496f3 14360 r-bioc-fmcsr_1.42.0+dfsg1-1_amd64.buildinfo 82a8b1da7094e4ee324144b039a49529f0c2c809 240646 r-bioc-fmcsr_1.42.0+dfsg1-1_amd64.deb Checksums-Sha256: e4370768d9c49b0e41e18daaf7d8923d43f0c9af9c2cf179e220e684d813daae 821014 r-bioc-fmcsr-dbgsym_1.42.0+dfsg1-1_amd64.ddeb 11ee433516d00d93f99e76ddf23560475c2a2026285aede4b6fc003d2da91c3b 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r-bioc-fmcsr-dbgsym_1.42.0+dfsg1-1_amd64.ddeb 2afa807c5b1e758d471e22695298ad60 240646 r-bioc-fmcsr_1.42.0+dfsg1-1_amd64.deb Checksums-Sha1: 8d46ef9b0c4ac7f9e72ea123347d2acf94450105 821014 r-bioc-fmcsr-dbgsym_1.42.0+dfsg1-1_amd64.ddeb 82a8b1da7094e4ee324144b039a49529f0c2c809 240646 r-bioc-fmcsr_1.42.0+dfsg1-1_amd64.deb Checksums-Sha256: e4370768d9c49b0e41e18daaf7d8923d43f0c9af9c2cf179e220e684d813daae 821014 r-bioc-fmcsr-dbgsym_1.42.0+dfsg1-1_amd64.ddeb 6e45996f1f5e3573ba01fa9a6a65adebf2c6b933409003afbc913b9961659a27 240646 r-bioc-fmcsr_1.42.0+dfsg1-1_amd64.deb Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Thu, 26 Oct 2023 22:05:46 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-13), autotools-dev (= 20220109.1), base-files (= 13ubuntu3), base-passwd (= 3.6.2), bash (= 5.2.15-2ubuntu1), binutils (= 2.41-5ubuntu1), binutils-common (= 2.41-5ubuntu1), binutils-x86-64-linux-gnu (= 2.41-5ubuntu1), bsdextrautils (= 2.39.1-4ubuntu2), bsdutils (= 1:2.39.1-4ubuntu2), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5build1), ca-certificates (= 20230311ubuntu1), coreutils (= 9.1-1ubuntu2), cpp (= 4:13.2.0-1ubuntu1), cpp-13 (= 13.2.0-6ubuntu1), dash (= 0.5.12-6ubuntu1), dctrl-tools (= 2.24-3build2), debconf (= 1.5.82), debhelper (= 13.11.7ubuntu1), debianutils (= 5.14), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-r (= 20230707ubuntu1), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.0ubuntu1), dpkg-dev (= 1.22.0ubuntu1), dwz (= 0.15-1), file (= 1:5.45-2), findutils (= 4.9.0-5), fontconfig (= 2.14.2-4ubuntu1), fontconfig-config (= 2.14.2-4ubuntu1), fonts-font-awesome (= 5.0.10+really4.7.0~dfsg-4.1), fonts-glyphicons-halflings (= 1.009~3.4.1+dfsg-3), fonts-mathjax (= 2.7.9+dfsg-1), fonts-noto-core (= 20201225-2), fonts-noto-mono (= 20201225-2), g++ (= 4:13.2.0-1ubuntu1), g++-13 (= 13.2.0-6ubuntu1), gcc (= 4:13.2.0-1ubuntu1), gcc-13 (= 13.2.0-6ubuntu1), gcc-13-base (= 13.2.0-6ubuntu1), gettext (= 0.21-13), gettext-base (= 0.21-13), gfortran (= 4:13.2.0-1ubuntu1), gfortran-13 (= 13.2.0-6ubuntu1), grep (= 3.11-3), groff-base (= 1.23.0-3), gzip (= 1.12-1ubuntu1), hostname (= 3.23+nmu1ubuntu1), icu-devtools (= 72.1-3ubuntu3), init-system-helpers (= 1.65.2ubuntu1), intltool-debian (= 0.35.0+20060710.6), javascript-common (= 11+nmu1), libacl1 (= 2.3.1-3), libalgorithm-c3-perl (= 0.11-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 13.2.0-6ubuntu1), libatomic1 (= 13.2.0-6ubuntu1), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.1.1-1), libaudit1 (= 1:3.1.1-1), libb-hooks-endofscope-perl (= 0.26-1), libb-hooks-op-check-perl (= 0.22-2build1), libbinutils (= 2.41-5ubuntu1), libblas-dev (= 3.11.0-2build1), libblas3 (= 3.11.0-2build1), libblkid1 (= 2.39.1-4ubuntu2), libboost1.81-dev (= 1.81.0-7), libbrotli1 (= 1.0.9-2build8), libbsd0 (= 0.11.7-4), libbz2-1.0 (= 1.0.8-5build1), libbz2-dev (= 1.0.8-5build1), libc-bin (= 2.38-3ubuntu1), libc-dev-bin (= 2.38-3ubuntu1), libc6 (= 2.38-3ubuntu1), libc6-dev (= 2.38-3ubuntu1), libcairo-gobject2 (= 1.18.0-1), libcairo2 (= 1.18.0-1), libcap-ng0 (= 0.8.3-1build2), libcap2 (= 1:2.66-4ubuntu1), libcc1-0 (= 13.2.0-6ubuntu1), libclass-c3-perl (= 0.35-2), libclass-load-perl (= 0.25-2), libclass-load-xs-perl (= 0.10-2build1), libclone-perl (= 0.46-1), libcom-err2 (= 1.47.0-2ubuntu1), libcrypt-dev (= 1:4.4.36-2), libcrypt1 (= 1:4.4.36-2), libctf-nobfd0 (= 2.41-5ubuntu1), libctf0 (= 2.41-5ubuntu1), libcurl3-gnutls (= 8.2.1-1ubuntu3.1), libcurl4 (= 8.2.1-1ubuntu3.1), libdata-optlist-perl (= 0.114-1), libdatrie1 (= 0.2.13-2), libdb5.3 (= 5.3.28+dfsg2-2), libdebconfclient0 (= 0.270ubuntu1), libdebhelper-perl (= 13.11.7ubuntu1), libdeflate0 (= 1.18-1), libdevel-callchecker-perl (= 0.008-2), libdevel-globaldestruction-perl (= 0.14-4), libdevel-overloadinfo-perl (= 0.007-1), libdevel-stacktrace-perl (= 2.0400-2), libdist-checkconflicts-perl (= 0.11-2), libdpkg-perl (= 1.22.0ubuntu1), libdw1 (= 0.189-4), libdynaloader-functions-perl (= 0.003-3), libelf1 (= 0.189-4), libencode-locale-perl (= 1.05-3), libeval-closure-perl (= 0.14-3), libexpat1 (= 2.5.0-2), libffi8 (= 3.4.4-1), libfile-stripnondeterminism-perl (= 1.13.1-1), libfile-which-perl (= 1.27-2), libfontconfig1 (= 2.14.2-4ubuntu1), libfreetype6 (= 2.13.2+dfsg-1), libfribidi0 (= 1.0.13-3), libgcc-13-dev (= 13.2.0-6ubuntu1), libgcc-s1 (= 13.2.0-6ubuntu1), libgcrypt20 (= 1.10.2-3ubuntu1), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgdk-pixbuf-2.0-0 (= 2.42.10+dfsg-1build1), libgdk-pixbuf2.0-common (= 2.42.10+dfsg-1build1), libgfortran-13-dev (= 13.2.0-6ubuntu1), libgfortran5 (= 13.2.0-6ubuntu1), libglib2.0-0 (= 2.78.1-1), libgmp10 (= 2:6.3.0+dfsg-2ubuntu4), libgnutls30 (= 3.8.1-4ubuntu1), libgomp1 (= 13.2.0-6ubuntu1), libgpg-error0 (= 1.47-2), libgprofng0 (= 2.41-5ubuntu1), libgraphite2-3 (= 1.3.14-1build2), libgssapi-krb5-2 (= 1.20.1-3ubuntu1), libharfbuzz0b (= 8.0.1-1), libhogweed6 (= 3.9.1-2), libhttp-date-perl (= 6.05-2), libhttp-message-perl (= 6.44-2ubuntu1), libhwasan0 (= 13.2.0-6ubuntu1), libice6 (= 2:1.0.10-1build2), libicu-dev (= 72.1-3ubuntu3), libicu72 (= 72.1-3ubuntu3), libidn2-0 (= 2.3.4-1), libio-html-perl (= 1.004-3), libisl23 (= 0.26-3), libitm1 (= 13.2.0-6ubuntu1), libjansson4 (= 2.14-2), libjbig0 (= 2.1-6.1ubuntu1), libjpeg-dev (= 8c-2ubuntu11), libjpeg-turbo8 (= 2.1.5-2ubuntu1), libjpeg-turbo8-dev (= 2.1.5-2ubuntu1), libjpeg8 (= 8c-2ubuntu11), libjpeg8-dev (= 8c-2ubuntu11), libjs-bootstrap (= 3.4.1+dfsg-3), libjs-bootstrap4 (= 4.6.1+dfsg1-4), libjs-d3 (= 3.5.17-4), libjs-es5-shim (= 4.6.7-2), libjs-highlight.js (= 9.18.5+dfsg1-2), libjs-jquery (= 3.6.1+dfsg+~3.5.14-1), libjs-jquery-datatables (= 1.11.5+dfsg-2), libjs-jquery-datatables-extensions (= 0.0+git20150910.28fd64e+dfsg-5), libjs-jquery-selectize.js (= 0.12.6+dfsg-1.1), libjs-jquery-ui (= 1.13.2+dfsg-1), libjs-json (= 0~20221030+~1.0.8-1), libjs-mathjax (= 2.7.9+dfsg-1), libjs-microplugin.js (= 0.0.3+dfsg-1.1), libjs-modernizr (= 2.6.2+ds1-5), libjs-popper.js (= 1.16.1+ds-6), libjs-prettify (= 2015.12.04+dfsg-1.1), libjs-sifter.js (= 0.6.0+dfsg-3), libjs-twitter-bootstrap-datepicker (= 1.3.1+dfsg1-4.1), libk5crypto3 (= 1.20.1-3ubuntu1), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-3ubuntu1), libkrb5support0 (= 1.20.1-3ubuntu1), liblapack-dev (= 3.11.0-2build1), liblapack3 (= 3.11.0-2build1), libldap2 (= 2.6.6+dfsg-1~exp1ubuntu1), liblerc4 (= 4.0.0+ds-2ubuntu2), liblsan0 (= 13.2.0-6ubuntu1), liblua5.3-0 (= 5.3.6-2), liblwp-mediatypes-perl (= 6.04-2), liblz4-1 (= 1.9.4-1), liblzma-dev (= 5.4.4-0.1), liblzma5 (= 5.4.4-0.1), libmagic-mgc (= 1:5.45-2), libmagic1 (= 1:5.45-2), libmd0 (= 1.1.0-1), libmodule-implementation-perl (= 0.09-2), libmodule-runtime-conflicts-perl (= 0.003-2), libmodule-runtime-perl (= 0.016-2), libmoose-perl (= 2.2206-1), libmount1 (= 2.39.1-4ubuntu2), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.1-1), libmro-compat-perl (= 0.15-2), libnamespace-clean-perl (= 0.27-2), libncurses-dev (= 6.4+20231016-1), libncurses6 (= 6.4+20231016-1), libncursesw6 (= 6.4+20231016-1), libnettle8 (= 3.9.1-2), libnghttp2-14 (= 1.57.0-1), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libp11-kit0 (= 0.25.0-4ubuntu1), libpackage-deprecationmanager-perl (= 0.18-1), libpackage-stash-perl (= 0.40-1), libpackage-stash-xs-perl (= 0.30-1build1), libpam-modules (= 1.5.2-6ubuntu1), libpam-modules-bin (= 1.5.2-6ubuntu1), libpam-runtime (= 1.5.2-6ubuntu1), libpam0g (= 1.5.2-6ubuntu1), libpango-1.0-0 (= 1.51.0+ds-2), libpangocairo-1.0-0 (= 1.51.0+ds-2), libpangoft2-1.0-0 (= 1.51.0+ds-2), libpaper-utils (= 1.1.29), libpaper1 (= 1.1.29), libparams-classify-perl (= 0.015-2build2), libparams-util-perl (= 1.102-2), libpcre2-16-0 (= 10.42-4), libpcre2-32-0 (= 10.42-4), libpcre2-8-0 (= 10.42-4), libpcre2-dev (= 10.42-4), libpcre2-posix3 (= 10.42-4), libperl5.36 (= 5.36.0-9ubuntu1), libpipeline1 (= 1.5.7-1), libpixman-1-0 (= 0.42.2-1), libpkgconf3 (= 1.8.1-2), libpng-dev (= 1.6.40-2), libpng16-16 (= 1.6.40-2), libpsl5 (= 0.21.2-1), libquadmath0 (= 13.2.0-6ubuntu1), libreadline-dev (= 8.2-1.3), libreadline8 (= 8.2-1.3), librsvg2-2 (= 2.54.7+dfsg-2), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build4), libsasl2-2 (= 2.1.28+dfsg1-3), libsasl2-modules-db (= 2.1.28+dfsg1-3), libseccomp2 (= 2.5.4-1ubuntu3), libselinux1 (= 3.5-1), libsframe1 (= 2.41-5ubuntu1), libsharpyuv0 (= 1.3.2-0.3), libsm6 (= 2:1.2.3-1build2), libsmartcols1 (= 2.39.1-4ubuntu2), libssh-4 (= 0.10.5-3ubuntu1), libssl3 (= 3.0.10-1ubuntu2.1), libstdc++-13-dev (= 13.2.0-6ubuntu1), libstdc++6 (= 13.2.0-6ubuntu1), libsub-exporter-perl (= 0.990-1), libsub-exporter-progressive-perl (= 0.001013-3), libsub-identify-perl (= 0.14-3), libsub-install-perl (= 0.929-1), libsub-name-perl (= 0.27-1), libsub-override-perl (= 0.09-4), libswitch-perl (= 2.17-3), libsystemd0 (= 253.5-1ubuntu7), libtasn1-6 (= 4.19.0-3), libtcl8.6 (= 8.6.13+dfsg-2), libthai-data (= 0.1.29-1build1), libthai0 (= 0.1.29-1build1), libtiff6 (= 4.5.1+git230720-1ubuntu1), libtimedate-perl (= 2.3300-2), libtinfo6 (= 6.4+20231016-1), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtk8.6 (= 8.6.13-2), libtool (= 2.4.7-7), libtry-tiny-perl (= 0.31-2), libtsan2 (= 13.2.0-6ubuntu1), libubsan1 (= 13.2.0-6ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 253.5-1ubuntu7), libunistring2 (= 1.0-2), liburi-perl (= 5.21-1), libuuid1 (= 2.39.1-4ubuntu2), libuv1 (= 1.46.0-2), libvariable-magic-perl (= 0.63-1), libwebp7 (= 1.3.2-0.3), libwww-curl-perl (= 4.17-10), libwww-curl-simple-perl (= 0.100191-3), libx11-6 (= 2:1.8.6-1ubuntu1), libx11-data (= 2:1.8.6-1ubuntu1), libxau6 (= 1:1.0.9-1build5), libxcb-render0 (= 1.15-1), libxcb-shm0 (= 1.15-1), libxcb1 (= 1.15-1), libxdmcp6 (= 1:1.1.3-0ubuntu5), libxext6 (= 2:1.3.4-1build1), libxft2 (= 2.3.6-1), libxml2 (= 2.9.14+dfsg-1.3), libxmuu1 (= 2:1.1.3-3), libxrender1 (= 1:0.9.10-1.1), libxss1 (= 1:1.2.3-1build2), libxt6 (= 1:1.2.1-1.1), libyaml-0-2 (= 0.2.5-1), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.5.0-9.9), login (= 1:4.13+dfsg1-1ubuntu1), lto-disabled-list (= 43), m4 (= 1.4.19-4), make (= 4.3-4.1build1), man-db (= 2.12.0-1), mawk (= 1.3.4.20230808-1), ncurses-base (= 6.4+20231016-1), ncurses-bin (= 6.4+20231016-1), node-bootstrap-sass (= 3.4.3-2), node-html5shiv (= 3.7.3+dfsg-5), node-normalize.css (= 8.0.1-5), openssl (= 3.0.10-1ubuntu2.1), pandoc (= 2.17.1.1-3ubuntu1), pandoc-data (= 2.17.1.1-3ubuntu1), patch (= 2.7.6-7build2), perl (= 5.36.0-9ubuntu1), perl-base (= 5.36.0-9ubuntu1), perl-modules-5.36 (= 5.36.0-9ubuntu1), pkg-config (= 1.8.1-2), pkgconf (= 1.8.1-2), pkgconf-bin (= 1.8.1-2), po-debconf (= 1.0.21+nmu1), r-base-core (= 4.3.1-4), r-base-dev (= 4.3.1-4), r-bioc-biocgenerics (= 0.46.0-1), r-bioc-chemminer (= 3.52.0+dfsg-1), r-cran-base64enc (= 0.1-3-3), r-cran-bh (= 1.81.0-1), r-cran-bitops (= 1.0-7-1), r-cran-bslib (= 0.4.2+dfsg-1), r-cran-cachem (= 1.0.8-1), r-cran-cli (= 3.6.1-1), r-cran-colorspace (= 2.1-0+dfsg-1), r-cran-commonmark (= 1.9.0-1), r-cran-crayon (= 1.5.2-1), r-cran-crosstalk (= 1.2.0+dfsg-1), r-cran-dbi (= 1.1.3-1), r-cran-digest (= 0.6.33-1), r-cran-dt (= 0.28+dfsg-1), r-cran-ellipsis (= 0.3.2-2), r-cran-evaluate (= 0.21-1), r-cran-fansi (= 1.0.4-1), r-cran-farver (= 2.1.1-1), r-cran-fastmap (= 1.1.1-1), r-cran-fontawesome (= 0.5.1-1), r-cran-fs (= 1.6.3+dfsg-1), r-cran-ggplot2 (= 3.4.2+dfsg-2), r-cran-glue (= 1.6.2-1), r-cran-gridextra (= 2.3-3build1), r-cran-gtable (= 0.3.3+dfsg-1), r-cran-highr (= 0.10+dfsg-1), r-cran-htmltools (= 0.5.5-1), r-cran-htmlwidgets (= 1.6.2+dfsg-1), r-cran-httpuv (= 1.6.11+dfsg-1), r-cran-isoband (= 0.2.7-1), r-cran-jquerylib (= 0.1.4+dfsg-4), r-cran-jsonlite (= 1.8.5+dfsg-1), r-cran-knitr (= 1.43+dfsg-2), r-cran-labeling (= 0.4.2-1), r-cran-later (= 1.3.1+dfsg-1), r-cran-lattice (= 0.21-8-2), r-cran-lazyeval (= 0.2.2-1build1), r-cran-lifecycle (= 1.0.3+dfsg-1), r-cran-littler (= 0.3.18-2), r-cran-magrittr (= 2.0.3-1), r-cran-mass (= 7.3-60-2), r-cran-matrix (= 1.6-1-1), r-cran-memoise (= 2.0.1-1), r-cran-mgcv (= 1.9-0-1), r-cran-mime (= 0.12-1), r-cran-munsell (= 0.5.0-2build1), r-cran-nlme (= 3.1.163-1), r-cran-pillar (= 1.9.0+dfsg-1), r-cran-pkgconfig (= 2.0.3-2build1), r-cran-pkgkitten (= 0.2.3-1), r-cran-png (= 0.1-8-1), r-cran-promises (= 1.2.0.1+dfsg-1), r-cran-r6 (= 2.5.1-1), r-cran-rappdirs (= 0.3.3-1), r-cran-rcolorbrewer (= 1.1-3-1build1), r-cran-rcpp (= 1.0.11-1), r-cran-rcurl (= 1.98-1.12+dfsg-1), r-cran-rjson (= 0.2.21-1), r-cran-rlang (= 1.1.1-1), r-cran-rmarkdown (= 2.23+dfsg-1), r-cran-rsvg (= 2.4.0-1), r-cran-runit (= 0.4.32-3), r-cran-sass (= 0.4.7+dfsg-1), r-cran-scales (= 1.2.1-1), r-cran-shiny (= 1.7.4.1+dfsg-1), r-cran-sourcetools (= 0.1.7-1-1), r-cran-stringi (= 1.7.12-1build1), r-cran-stringr (= 1.5.0-1), r-cran-tibble (= 3.2.1+dfsg-2), r-cran-tinytex (= 0.45-1), r-cran-utf8 (= 1.2.3-1), r-cran-vctrs (= 0.6.3-1), r-cran-viridislite (= 0.4.2-2), r-cran-withr (= 2.5.0-1), r-cran-xfun (= 0.39+dfsg-1), r-cran-xtable (= 1:1.8-4-2), r-cran-yaml (= 2.3.7-1), readline-common (= 8.2-1.3), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.9-1), sensible-utils (= 0.0.20), shared-mime-info (= 2.2-1), sysvinit-utils (= 3.07-1ubuntu1), tar (= 1.34+dfsg-1.2ubuntu1), tzdata (= 2023c-9ubuntu1), ucf (= 3.0043+nmu1), unzip (= 6.0-28ubuntu1), util-linux (= 2.39.1-4ubuntu2), x11-common (= 1:7.7+23ubuntu2), xauth (= 1:1.1.2-1), xdg-utils (= 1.1.3-4.1ubuntu3), xz-utils (= 5.4.4-0.1), zip (= 3.0-13), zlib1g (= 1:1.2.13.dfsg-1ubuntu5), zlib1g-dev (= 1:1.2.13.dfsg-1ubuntu5) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1697725166" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-bioc-fmcsr_1.42.0+dfsg1-1_amd64.deb ------------------------------------- new Debian package, version 2.0. size 240646 bytes: control archive=1795 bytes. 1244 bytes, 23 lines control 2382 bytes, 31 lines md5sums Package: r-bioc-fmcsr Version: 1.42.0+dfsg1-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian R Packages Maintainers Installed-Size: 433 Depends: r-api-4.0, r-api-bioc-3.17, r-bioc-chemminer, r-cran-runit, r-bioc-biocgenerics, libc6 (>= 2.38), libgcc-s1 (>= 3.0), libstdc++6 (>= 13.1) Suggests: r-bioc-biocstyle, r-cran-knitr, r-cran-rmarkdown Section: gnu-r Priority: optional Homepage: https://bioconductor.org/packages/fmcsR/ Description: GNU R mismatch tolerant maximum common substructure searching The fmcsR package introduces an efficient maximum common substructure (MCS) algorithms combined with a novel matching strategy that allows for atom and/or bond mismatches in the substructures shared among two small molecules. The resulting flexible MCSs (FMCSs) are often larger than strict MCSs, resulting in the identification of more common features in their source structures, as well as a higher sensitivity in finding compounds with weak structural similarities. The fmcsR package provides several utilities to use the FMCS algorithm for pairwise compound comparisons, structure similarity searching and clustering. drwxr-xr-x root/root 0 2023-10-19 14:19 ./ drwxr-xr-x root/root 0 2023-10-19 14:19 ./usr/ drwxr-xr-x root/root 0 2023-10-19 14:19 ./usr/lib/ drwxr-xr-x root/root 0 2023-10-19 14:19 ./usr/lib/R/ drwxr-xr-x root/root 0 2023-10-19 14:19 ./usr/lib/R/site-library/ drwxr-xr-x root/root 0 2023-10-19 14:19 ./usr/lib/R/site-library/fmcsR/ -rw-r--r-- root/root 86 2023-10-19 14:19 ./usr/lib/R/site-library/fmcsR/CITATION -rw-r--r-- root/root 1755 2023-10-19 14:19 ./usr/lib/R/site-library/fmcsR/DESCRIPTION -rw-r--r-- root/root 324 2023-10-19 14:19 ./usr/lib/R/site-library/fmcsR/INDEX drwxr-xr-x root/root 0 2023-10-19 14:19 ./usr/lib/R/site-library/fmcsR/Meta/ -rw-r--r-- root/root 540 2023-10-19 14:19 ./usr/lib/R/site-library/fmcsR/Meta/Rd.rds -rw-r--r-- root/root 121 2023-10-19 14:19 ./usr/lib/R/site-library/fmcsR/Meta/data.rds -rw-r--r-- root/root 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./usr/share/doc/r-bioc-fmcsr/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 3708 Build-Time: 21 Distribution: noble-proposed Host Architecture: amd64 Install-Time: 37 Job: r-bioc-fmcsr_1.42.0+dfsg1-1.dsc Machine Architecture: amd64 Package: r-bioc-fmcsr Package-Time: 59 Source-Version: 1.42.0+dfsg1-1 Space: 3708 Status: successful Version: 1.42.0+dfsg1-1 -------------------------------------------------------------------------------- Finished at 2023-10-26T22:05:46Z Build needed 00:00:59, 3708k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-26922041 Scanning for processes to kill in build PACKAGEBUILD-26922041