RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux ross 3.2.0-54-powerpc64-smp #82-Ubuntu SMP Tue Sep 10 20:15:55 UTC 2013 ppc64 Buildd toolchain package versions: launchpad-buildd_125 python-lpbuildd_125 bzr_2.5.1-0ubuntu2 dpkg-dev_1.16.1.2ubuntu7.5. Syncing the system clock with the buildd NTP service... 25 Oct 17:34:10 ntpdate[10699]: adjust time server 10.211.37.1 offset -0.000121 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-6500019', '/home/buildd/filecache-default/0061a8ccefd4153f7b486906afe8086864d2a65e'] Unpacking chroot for build PACKAGEBUILD-6500019 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-6500019'] Mounting chroot for build PACKAGEBUILD-6500019 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-6500019', 'deb http://ftpmaster.internal/ubuntu vivid main universe', 'deb http://ftpmaster.internal/ubuntu vivid-security main universe', 'deb http://ftpmaster.internal/ubuntu vivid-updates main universe', 'deb http://ftpmaster.internal/ubuntu vivid-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-6500019 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-6500019', 'powerpc'] Updating debian chroot for build PACKAGEBUILD-6500019 Ign http://archive-team.internal vivid InRelease Ign http://ftpmaster.internal vivid InRelease Ign http://archive-team.internal vivid Release.gpg Ign http://ftpmaster.internal vivid-security InRelease Get:1 http://archive-team.internal vivid Release [742 B] Ign http://ftpmaster.internal vivid-updates InRelease Ign http://ftpmaster.internal vivid-proposed InRelease Get:2 http://ftpmaster.internal vivid Release.gpg [933 B] Get:3 http://ftpmaster.internal vivid-security Release.gpg [933 B] Get:4 http://ftpmaster.internal vivid-updates Release.gpg [933 B] Get:5 http://ftpmaster.internal vivid-proposed Release.gpg [933 B] Get:6 http://ftpmaster.internal vivid Release [112 kB] Get:7 http://archive-team.internal vivid/main powerpc Packages Get:8 http://ftpmaster.internal vivid-security Release [59.7 kB] Get:9 http://ftpmaster.internal vivid-updates Release [59.7 kB] Get:10 http://ftpmaster.internal vivid-proposed Release [59.7 kB] Ign http://archive-team.internal vivid/main Translation-en Get:11 http://ftpmaster.internal vivid/main powerpc Packages [1298 kB] Get:12 http://ftpmaster.internal vivid/universe powerpc Packages [6076 kB] Get:13 http://ftpmaster.internal vivid/main Translation-en [769 kB] Get:14 http://ftpmaster.internal vivid/universe Translation-en [4277 kB] Get:15 http://ftpmaster.internal vivid-security/main powerpc Packages [14 B] Get:16 http://ftpmaster.internal vivid-security/universe powerpc Packages [14 B] Get:17 http://ftpmaster.internal vivid-security/main Translation-en [14 B] Get:18 http://ftpmaster.internal vivid-security/universe Translation-en [14 B] Get:19 http://ftpmaster.internal vivid-updates/main powerpc Packages [14 B] Get:20 http://ftpmaster.internal vivid-updates/universe powerpc Packages [14 B] Get:21 http://ftpmaster.internal vivid-updates/main Translation-en [14 B] Get:22 http://ftpmaster.internal vivid-updates/universe Translation-en [14 B] Get:23 http://ftpmaster.internal vivid-proposed/main powerpc Packages [59.7 kB] Get:24 http://ftpmaster.internal vivid-proposed/universe powerpc Packages [289 kB] Get:25 http://ftpmaster.internal vivid-proposed/main Translation-en [60.9 kB] Get:26 http://ftpmaster.internal vivid-proposed/universe Translation-en [262 kB] Fetched 13.4 MB in 17s (761 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: base-files binutils ca-certificates cpp-4.9 g++-4.9 gcc-4.9 gcc-4.9-base grep libacl1 libasan1 libatomic1 libdb5.3 libdrm2 libgcc-4.9-dev libgcc1 libgmp10 libgomp1 libgpg-error0 libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 libp11-kit0 libplymouth4 libsasl2-2 libsasl2-modules-db libselinux1 libsqlite3-0 libstdc++-4.9-dev libstdc++6 libsystemd-journal0 libtasn1-6 libubsan0 libudev1 libusb-0.1-4 patch perl perl-base perl-modules plymouth tzdata udev 42 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 35.4 MB of archives. After this operation, 174 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ vivid/main base-files powerpc 7.2ubuntu8 [68.4 kB] Get:2 http://ftpmaster.internal/ubuntu/ vivid/main grep powerpc 2.20-4 [137 kB] Get:3 http://ftpmaster.internal/ubuntu/ vivid-proposed/main perl powerpc 5.20.1-2 [2151 kB] Get:4 http://ftpmaster.internal/ubuntu/ vivid-proposed/main perl-base powerpc 5.20.1-2 [1093 kB] Get:5 http://ftpmaster.internal/ubuntu/ vivid-proposed/main perl-modules all 5.20.1-2 [2531 kB] Get:6 http://ftpmaster.internal/ubuntu/ vivid/main libdb5.3 powerpc 5.3.28-6 [582 kB] Get:7 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libubsan0 powerpc 4.9.1-19ubuntu1 [78.5 kB] Get:8 http://ftpmaster.internal/ubuntu/ vivid-proposed/main gcc-4.9-base powerpc 4.9.1-19ubuntu1 [15.8 kB] Get:9 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libstdc++6 powerpc 4.9.1-19ubuntu1 [289 kB] Get:10 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libgomp1 powerpc 4.9.1-19ubuntu1 [37.5 kB] Get:11 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libatomic1 powerpc 4.9.1-19ubuntu1 [7364 B] Get:12 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libasan1 powerpc 4.9.1-19ubuntu1 [175 kB] Get:13 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libgcc-4.9-dev powerpc 4.9.1-19ubuntu1 [424 kB] Get:14 http://ftpmaster.internal/ubuntu/ vivid-proposed/main cpp-4.9 powerpc 4.9.1-19ubuntu1 [4473 kB] Get:15 http://ftpmaster.internal/ubuntu/ vivid-proposed/main binutils powerpc 2.24.90.20141023-1ubuntu1 [2233 kB] Get:16 http://ftpmaster.internal/ubuntu/ vivid-proposed/main gcc-4.9 powerpc 4.9.1-19ubuntu1 [4884 kB] Get:17 http://ftpmaster.internal/ubuntu/ vivid-proposed/main g++-4.9 powerpc 4.9.1-19ubuntu1 [12.3 MB] Get:18 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libstdc++-4.9-dev powerpc 4.9.1-19ubuntu1 [1105 kB] Get:19 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libgcc1 powerpc 1:4.9.1-19ubuntu1 [35.2 kB] Get:20 http://ftpmaster.internal/ubuntu/ vivid/main libgmp10 powerpc 2:6.0.0+dfsg-6 [198 kB] Get:21 http://ftpmaster.internal/ubuntu/ vivid/main libusb-0.1-4 powerpc 2:0.1.12-25 [15.1 kB] Get:22 http://ftpmaster.internal/ubuntu/ vivid/main libacl1 powerpc 2.2.52-2 [15.3 kB] Get:23 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libgpg-error0 powerpc 1.17-2 [31.0 kB] Get:24 http://ftpmaster.internal/ubuntu/ vivid/main libselinux1 powerpc 2.3-2 [54.1 kB] Get:25 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libsystemd-journal0 powerpc 215-5ubuntu1 [54.4 kB] Get:26 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libp11-kit0 powerpc 0.20.7-1 [62.8 kB] Get:27 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libsqlite3-0 powerpc 3.8.7-1 [327 kB] Get:28 http://ftpmaster.internal/ubuntu/ vivid/main libtasn1-6 powerpc 4.2-2 [38.7 kB] Get:29 http://ftpmaster.internal/ubuntu/ vivid/main libdrm2 powerpc 2.4.58-2 [21.6 kB] Get:30 http://ftpmaster.internal/ubuntu/ vivid/main plymouth powerpc 0.9.0-0ubuntu8 [87.6 kB] Get:31 http://ftpmaster.internal/ubuntu/ vivid-proposed/main udev powerpc 215-5ubuntu1 [828 kB] Get:32 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libudev1 powerpc 215-5ubuntu1 [32.4 kB] Get:33 http://ftpmaster.internal/ubuntu/ vivid/main libplymouth4 powerpc 0.9.0-0ubuntu8 [75.6 kB] Get:34 http://ftpmaster.internal/ubuntu/ vivid/main libgssapi-krb5-2 powerpc 1.12.1+dfsg-11 [102 kB] Get:35 http://ftpmaster.internal/ubuntu/ vivid/main libkrb5-3 powerpc 1.12.1+dfsg-11 [237 kB] Get:36 http://ftpmaster.internal/ubuntu/ vivid/main libkrb5support0 powerpc 1.12.1+dfsg-11 [29.3 kB] Get:37 http://ftpmaster.internal/ubuntu/ vivid/main libk5crypto3 powerpc 1.12.1+dfsg-11 [82.4 kB] Get:38 http://ftpmaster.internal/ubuntu/ vivid/main libsasl2-modules-db powerpc 2.1.26.dfsg1-12 [13.9 kB] Get:39 http://ftpmaster.internal/ubuntu/ vivid/main libsasl2-2 powerpc 2.1.26.dfsg1-12 [44.3 kB] Get:40 http://ftpmaster.internal/ubuntu/ vivid/main tzdata all 2014i-1 [182 kB] Get:41 http://ftpmaster.internal/ubuntu/ vivid/main ca-certificates all 20141019 [192 kB] Get:42 http://ftpmaster.internal/ubuntu/ vivid/main patch powerpc 2.7.1-6 [87.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 35.4 MB in 4s (8747 kB/s) (Reading database ... 11338 files and directories currently installed.) Preparing to unpack .../base-files_7.2ubuntu8_powerpc.deb ... Unpacking base-files (7.2ubuntu8) over (7.2ubuntu7) ... Setting up base-files (7.2ubuntu8) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Installing new version of config file /etc/os-release ... (Reading database ... 11338 files and directories currently installed.) Preparing to unpack .../grep_2.20-4_powerpc.deb ... Unpacking grep (2.20-4) over (2.20-3) ... Setting up grep (2.20-4) ... (Reading database ... 11338 files and directories currently installed.) Preparing to unpack .../perl_5.20.1-2_powerpc.deb ... Unpacking perl (5.20.1-2) over (5.20.1-1) ... Preparing to unpack .../perl-base_5.20.1-2_powerpc.deb ... Unpacking perl-base (5.20.1-2) over (5.20.1-1) ... Setting up perl-base (5.20.1-2) ... (Reading database ... 11338 files and directories currently installed.) Preparing to unpack .../perl-modules_5.20.1-2_all.deb ... Unpacking perl-modules (5.20.1-2) over (5.20.1-1) ... Preparing to unpack .../libdb5.3_5.3.28-6_powerpc.deb ... Unpacking libdb5.3:powerpc (5.3.28-6) over (5.3.28-5) ... Setting up libdb5.3:powerpc (5.3.28-6) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11338 files and directories currently installed.) Preparing to unpack .../libubsan0_4.9.1-19ubuntu1_powerpc.deb ... Unpacking libubsan0:powerpc (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../gcc-4.9-base_4.9.1-19ubuntu1_powerpc.deb ... Unpacking gcc-4.9-base:powerpc (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Setting up gcc-4.9-base:powerpc (4.9.1-19ubuntu1) ... (Reading database ... 11338 files and directories currently installed.) Preparing to unpack .../libstdc++6_4.9.1-19ubuntu1_powerpc.deb ... Unpacking libstdc++6:powerpc (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Setting up libstdc++6:powerpc (4.9.1-19ubuntu1) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11338 files and directories currently installed.) Preparing to unpack .../libgomp1_4.9.1-19ubuntu1_powerpc.deb ... Unpacking libgomp1:powerpc (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libatomic1_4.9.1-19ubuntu1_powerpc.deb ... Unpacking libatomic1:powerpc (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libasan1_4.9.1-19ubuntu1_powerpc.deb ... Unpacking libasan1:powerpc (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libgcc-4.9-dev_4.9.1-19ubuntu1_powerpc.deb ... Unpacking libgcc-4.9-dev:powerpc (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../cpp-4.9_4.9.1-19ubuntu1_powerpc.deb ... Unpacking cpp-4.9 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../binutils_2.24.90.20141023-1ubuntu1_powerpc.deb ... Unpacking binutils (2.24.90.20141023-1ubuntu1) over (2.24.90.20141014-0ubuntu3) ... 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Unpacking libusb-0.1-4:powerpc (2:0.1.12-25) over (2:0.1.12-24) ... Setting up libusb-0.1-4:powerpc (2:0.1.12-25) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11343 files and directories currently installed.) Preparing to unpack .../libacl1_2.2.52-2_powerpc.deb ... Unpacking libacl1:powerpc (2.2.52-2) over (2.2.52-1.1) ... Setting up libacl1:powerpc (2.2.52-2) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11343 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.17-2_powerpc.deb ... Unpacking libgpg-error0:powerpc (1.17-2) over (1.13-4) ... Setting up libgpg-error0:powerpc (1.17-2) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11343 files and directories currently installed.) Preparing to unpack .../libselinux1_2.3-2_powerpc.deb ... Unpacking libselinux1:powerpc (2.3-2) over (2.3-1build1) ... Setting up libselinux1:powerpc (2.3-2) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11343 files and directories currently installed.) Preparing to unpack .../libsystemd-journal0_215-5ubuntu1_powerpc.deb ... Unpacking libsystemd-journal0:powerpc (215-5ubuntu1) over (208-8ubuntu8) ... Setting up libsystemd-journal0:powerpc (215-5ubuntu1) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11343 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.20.7-1_powerpc.deb ... Unpacking libp11-kit0:powerpc (0.20.7-1) over (0.20.2-5) ... Preparing to unpack .../libsqlite3-0_3.8.7-1_powerpc.deb ... Unpacking libsqlite3-0:powerpc (3.8.7-1) over (3.8.6-1) ... Preparing to unpack .../libtasn1-6_4.2-2_powerpc.deb ... Unpacking libtasn1-6:powerpc (4.2-2) over (4.0-2) ... Preparing to unpack .../libdrm2_2.4.58-2_powerpc.deb ... Unpacking libdrm2:powerpc (2.4.58-2) over (2.4.56-1) ... Preparing to unpack .../plymouth_0.9.0-0ubuntu8_powerpc.deb ... Unpacking plymouth (0.9.0-0ubuntu8) over (0.9.0-0ubuntu7) ... Preparing to unpack .../udev_215-5ubuntu1_powerpc.deb ... Unpacking udev (215-5ubuntu1) over (208-8ubuntu8) ... Preparing to unpack .../libudev1_215-5ubuntu1_powerpc.deb ... Unpacking libudev1:powerpc (215-5ubuntu1) over (208-8ubuntu8) ... Preparing to unpack .../libplymouth4_0.9.0-0ubuntu8_powerpc.deb ... Unpacking libplymouth4:powerpc (0.9.0-0ubuntu8) over (0.9.0-0ubuntu7) ... Preparing to unpack .../libgssapi-krb5-2_1.12.1+dfsg-11_powerpc.deb ... Unpacking libgssapi-krb5-2:powerpc (1.12.1+dfsg-11) over (1.12.1+dfsg-10) ... Preparing to unpack .../libkrb5-3_1.12.1+dfsg-11_powerpc.deb ... Unpacking libkrb5-3:powerpc (1.12.1+dfsg-11) over (1.12.1+dfsg-10) ... Preparing to unpack .../libkrb5support0_1.12.1+dfsg-11_powerpc.deb ... Unpacking libkrb5support0:powerpc (1.12.1+dfsg-11) over (1.12.1+dfsg-10) ... Preparing to unpack .../libk5crypto3_1.12.1+dfsg-11_powerpc.deb ... Unpacking libk5crypto3:powerpc (1.12.1+dfsg-11) over (1.12.1+dfsg-10) ... Preparing to unpack .../libsasl2-modules-db_2.1.26.dfsg1-12_powerpc.deb ... Unpacking libsasl2-modules-db:powerpc (2.1.26.dfsg1-12) over (2.1.26.dfsg1-11) ... Preparing to unpack .../libsasl2-2_2.1.26.dfsg1-12_powerpc.deb ... Unpacking libsasl2-2:powerpc (2.1.26.dfsg1-12) over (2.1.26.dfsg1-11) ... Preparing to unpack .../tzdata_2014i-1_all.deb ... Unpacking tzdata (2014i-1) over (2014h-2) ... Setting up tzdata (2014i-1) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Oct 25 17:35:44 UTC 2014. Universal Time is now: Sat Oct 25 17:35:44 UTC 2014. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 11348 files and directories currently installed.) Preparing to unpack .../ca-certificates_20141019_all.deb ... Unpacking ca-certificates (20141019) over (20140325) ... Preparing to unpack .../patch_2.7.1-6_powerpc.deb ... Unpacking patch (2.7.1-6) over (2.7.1-5) ... Setting up libubsan0:powerpc (4.9.1-19ubuntu1) ... Setting up libgomp1:powerpc (4.9.1-19ubuntu1) ... Setting up libatomic1:powerpc (4.9.1-19ubuntu1) ... Setting up libasan1:powerpc (4.9.1-19ubuntu1) ... Setting up libgcc-4.9-dev:powerpc (4.9.1-19ubuntu1) ... Setting up libgmp10:powerpc (2:6.0.0+dfsg-6) ... Setting up cpp-4.9 (4.9.1-19ubuntu1) ... Setting up binutils (2.24.90.20141023-1ubuntu1) ... Setting up gcc-4.9 (4.9.1-19ubuntu1) ... Setting up libstdc++-4.9-dev:powerpc (4.9.1-19ubuntu1) ... Setting up g++-4.9 (4.9.1-19ubuntu1) ... Setting up libp11-kit0:powerpc (0.20.7-1) ... Setting up libsqlite3-0:powerpc (3.8.7-1) ... Setting up libtasn1-6:powerpc (4.2-2) ... Setting up libdrm2:powerpc (2.4.58-2) ... Setting up libudev1:powerpc (215-5ubuntu1) ... Setting up libplymouth4:powerpc (0.9.0-0ubuntu8) ... Setting up udev (215-5ubuntu1) ... Installing new version of config file /etc/init.d/udev-finish ... A chroot environment has been detected, udev not started. update-initramfs: deferring update (trigger activated) Removing obsolete conffile /etc/udev/rules.d/README ... Setting up plymouth (0.9.0-0ubuntu8) ... update-initramfs: deferring update (trigger activated) Setting up libkrb5support0:powerpc (1.12.1+dfsg-11) ... Setting up libk5crypto3:powerpc (1.12.1+dfsg-11) ... Setting up libkrb5-3:powerpc (1.12.1+dfsg-11) ... Setting up libgssapi-krb5-2:powerpc (1.12.1+dfsg-11) ... Setting up libsasl2-modules-db:powerpc (2.1.26.dfsg1-12) ... Setting up libsasl2-2:powerpc (2.1.26.dfsg1-12) ... Setting up ca-certificates (20141019) ... Setting up patch (2.7.1-6) ... Setting up perl-modules (5.20.1-2) ... Setting up perl (5.20.1-2) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... Processing triggers for initramfs-tools (0.103ubuntu8) ... Processing triggers for ca-certificates (20141019) ... Updating certificates in /etc/ssl/certs... 10 added, 5 removed; done. Running hooks in /etc/ca-certificates/update.d....done. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-6500019', 'powerpc', 'vivid-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=vivid-proposed', '--purpose=PRIMARY', '--architecture=powerpc', '--comp=universe', 'r-bioc-genomicalignments_1.0.6-1.dsc'] Initiating build PACKAGEBUILD-6500019 with 2 jobs across 2 processor cores. Kernel reported to sbuild: 3.2.0-54-powerpc64-smp #82-Ubuntu SMP Tue Sep 10 20:15:55 UTC 2013 ppc Automatic build of r-bioc-genomicalignments_1.0.6-1 on ross by sbuild/powerpc 1.170.5 Build started at 20141025-1736 ****************************************************************************** r-bioc-genomicalignments_1.0.6-1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 9), cdbs, r-base-dev, r-bioc-biocgenerics, r-bioc-iranges, r-bioc-genomicranges, r-bioc-biostrings, r-bioc-rsamtools (>= 1.15.26), r-bioc-bsgenome (>= 1.31.12), r-bioc-biocparallel Checking for already installed source dependencies... debhelper: missing cdbs: missing r-base-dev: missing r-bioc-biocgenerics: missing r-bioc-iranges: missing r-bioc-genomicranges: missing r-bioc-biostrings: missing r-bioc-rsamtools: missing r-bioc-bsgenome: missing r-bioc-biocparallel: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper cdbs r-base-dev r-bioc-biocgenerics r-bioc-iranges r-bioc-genomicranges r-bioc-biostrings r-bioc-rsamtools r-bioc-bsgenome r-bioc-biocparallel Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autoconf automake autotools-dev bsdmainutils dh-apparmor dh-translations file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-4.9 groff-base intltool intltool-debian libasprintf0c2 libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libencode-locale-perl libexpat1 libfile-listing-perl libfontconfig1 libfreetype6 libgfortran-4.9-dev libgfortran3 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libio-html-perl libio-socket-ssl-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic1 libncurses5-dev libnet-http-perl libnet-ssleay-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-dev libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline-dev libreadline6-dev libsigsegv2 libsm6 libtcl8.5 libthai-data libthai0 libtiff5 libtinfo-dev libtk8.5 libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2 libxrender1 libxss1 libxt6 littler m4 man-db mime-support netbase po-debconf python python-minimal python-scour python2.7 python2.7-minimal r-base-core r-bioc-genomeinfodb r-bioc-xvector r-cran-base64enc r-cran-batchjobs r-cran-bbmisc r-cran-bitops r-cran-brew r-cran-checkmate r-cran-codetools r-cran-dbi r-cran-digest r-cran-fail r-cran-foreach r-cran-iterators r-cran-plyr r-cran-rcpp r-cran-rsqlite r-cran-sendmailr r-cran-stringr ucf unzip x11-common xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc libtool wamerican wordlist whois vacation devscripts dh-make apparmor-easyprof gettext-doc gfortran-multilib gfortran-doc gfortran-4.9-multilib gfortran-4.9-doc libgfortran3-dbg groff libdata-dump-perl libcrypt-ssleay-perl liblzma-doc ncurses-doc readline-doc tcl8.5 tk8.5 libauthen-ntlm-perl r-cran-getopt less www-browser libmail-box-perl python-doc python-tk python-rsvg python-cairo python2.7-doc binfmt-support r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo r-cran-rmysql r-cran-inline r-cran-runit gvfs-bin Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xdg-user-dirs libhtml-format-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl xml-core libmail-sendmail-perl r-recommended r-doc-html r-cran-doparallel r-bioc-shortread r-cran-domc r-cran-abind libfile-mimeinfo-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autotools-dev bsdmainutils cdbs debhelper dh-apparmor dh-translations file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-4.9 groff-base intltool intltool-debian libasprintf0c2 libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libencode-locale-perl libexpat1 libfile-listing-perl libfontconfig1 libfreetype6 libgfortran-4.9-dev libgfortran3 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libio-html-perl libio-socket-ssl-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic1 libncurses5-dev libnet-http-perl libnet-ssleay-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-dev libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline-dev libreadline6-dev libsigsegv2 libsm6 libtcl8.5 libthai-data libthai0 libtiff5 libtinfo-dev libtk8.5 libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2 libxrender1 libxss1 libxt6 littler m4 man-db mime-support netbase po-debconf python python-minimal python-scour python2.7 python2.7-minimal r-base-core r-base-dev r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-bsgenome r-bioc-genomeinfodb r-bioc-genomicranges r-bioc-iranges r-bioc-rsamtools r-bioc-xvector r-cran-base64enc r-cran-batchjobs r-cran-bbmisc r-cran-bitops r-cran-brew r-cran-checkmate r-cran-codetools r-cran-dbi r-cran-digest r-cran-fail r-cran-foreach r-cran-iterators r-cran-plyr r-cran-rcpp r-cran-rsqlite r-cran-sendmailr r-cran-stringr ucf unzip x11-common xdg-utils zip zlib1g-dev 0 upgraded, 147 newly installed, 0 to remove and 0 not upgraded. Need to get 62.4 MB of archives. After this operation, 177 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ vivid/main libexpat1 powerpc 2.1.0-6ubuntu1 [63.8 kB] Get:2 http://ftpmaster.internal/ubuntu/ vivid/main libmagic1 powerpc 1:5.19-1ubuntu1.1 [200 kB] Get:3 http://ftpmaster.internal/ubuntu/ vivid/main libasprintf0c2 powerpc 0.19.2-2ubuntu1 [6384 B] Get:4 http://ftpmaster.internal/ubuntu/ vivid/main libglib2.0-0 powerpc 2.42.0-2 [950 kB] Get:5 http://ftpmaster.internal/ubuntu/ vivid/main libpipeline1 powerpc 1.3.1-1 [22.3 kB] Get:6 http://ftpmaster.internal/ubuntu/ vivid/main libxau6 powerpc 1:1.0.8-1 [8284 B] Get:7 http://ftpmaster.internal/ubuntu/ vivid/main libxdmcp6 powerpc 1:1.1.1-1build1 [10.6 kB] Get:8 http://ftpmaster.internal/ubuntu/ vivid/main libxcb1 powerpc 1.10-2ubuntu1 [34.5 kB] Get:9 http://ftpmaster.internal/ubuntu/ vivid/main libx11-data all 2:1.6.2-2ubuntu2 [112 kB] Get:10 http://ftpmaster.internal/ubuntu/ vivid/main libx11-6 powerpc 2:1.6.2-2ubuntu2 [521 kB] Get:11 http://ftpmaster.internal/ubuntu/ vivid/main libxext6 powerpc 2:1.3.3-1 [26.2 kB] Get:12 http://ftpmaster.internal/ubuntu/ vivid/main libxml2 powerpc 2.9.1+dfsg1-4ubuntu1 [483 kB] Get:13 http://ftpmaster.internal/ubuntu/ vivid/main groff-base powerpc 1.22.2-8 [1217 kB] Get:14 http://ftpmaster.internal/ubuntu/ vivid/main bsdmainutils powerpc 9.0.5ubuntu1 [202 kB] Get:15 http://ftpmaster.internal/ubuntu/ vivid/main man-db powerpc 2.7.0.2-2 [839 kB] Get:16 http://ftpmaster.internal/ubuntu/ vivid/main fonts-dejavu-core all 2.34-1ubuntu1 [1024 kB] Get:17 http://ftpmaster.internal/ubuntu/ vivid/main ucf all 3.0030 [55.5 kB] Get:18 http://ftpmaster.internal/ubuntu/ vivid/main fontconfig-config all 2.11.1-0ubuntu3 [48.7 kB] Get:19 http://ftpmaster.internal/ubuntu/ vivid/main libfreetype6 powerpc 2.5.2-2ubuntu1 [274 kB] Get:20 http://ftpmaster.internal/ubuntu/ vivid/main libfontconfig1 powerpc 2.11.1-0ubuntu3 [117 kB] Get:21 http://ftpmaster.internal/ubuntu/ vivid/main libpixman-1-0 powerpc 0.32.4-1ubuntu1 [143 kB] Get:22 http://ftpmaster.internal/ubuntu/ vivid/main libxcb-render0 powerpc 1.10-2ubuntu1 [10.3 kB] Get:23 http://ftpmaster.internal/ubuntu/ vivid/main libxcb-shm0 powerpc 1.10-2ubuntu1 [5308 B] Get:24 http://ftpmaster.internal/ubuntu/ vivid/main libxrender1 powerpc 1:0.9.8-1 [20.1 kB] Get:25 http://ftpmaster.internal/ubuntu/ vivid/main libcairo2 powerpc 1.13.0~20140204-0ubuntu1 [486 kB] Get:26 http://ftpmaster.internal/ubuntu/ vivid/main libcroco3 powerpc 0.6.8-3 [70.7 kB] Get:27 http://ftpmaster.internal/ubuntu/ vivid/main libdatrie1 powerpc 0.2.8-1 [15.3 kB] Get:28 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libgfortran3 powerpc 4.9.1-19ubuntu1 [188 kB] Get:29 http://ftpmaster.internal/ubuntu/ vivid/main libgraphite2-3 powerpc 1.2.4-3ubuntu1 [49.3 kB] Get:30 http://ftpmaster.internal/ubuntu/ vivid/main libharfbuzz0b powerpc 0.9.35-1 [115 kB] Get:31 http://ftpmaster.internal/ubuntu/ vivid/main x11-common all 1:7.7+7ubuntu2 [62.5 kB] Get:32 http://ftpmaster.internal/ubuntu/ vivid/main libice6 powerpc 2:1.0.9-1 [34.8 kB] Get:33 http://ftpmaster.internal/ubuntu/ vivid/main libjpeg-turbo8 powerpc 1.3.0-0ubuntu2 [85.3 kB] Get:34 http://ftpmaster.internal/ubuntu/ vivid/main libthai-data all 0.1.21-1 [131 kB] Get:35 http://ftpmaster.internal/ubuntu/ vivid/main libthai0 powerpc 0.1.21-1 [16.0 kB] Get:36 http://ftpmaster.internal/ubuntu/ vivid/main fontconfig powerpc 2.11.1-0ubuntu3 [174 kB] Get:37 http://ftpmaster.internal/ubuntu/ vivid/main libpango-1.0-0 powerpc 1.36.6-1 [142 kB] Get:38 http://ftpmaster.internal/ubuntu/ vivid/main libpangoft2-1.0-0 powerpc 1.36.6-1 [30.3 kB] Get:39 http://ftpmaster.internal/ubuntu/ vivid/main libpangocairo-1.0-0 powerpc 1.36.6-1 [19.4 kB] Get:40 http://ftpmaster.internal/ubuntu/ vivid/main libpaper1 powerpc 1.1.24+nmu2ubuntu3 [13.1 kB] Get:41 http://ftpmaster.internal/ubuntu/ vivid/main libpcrecpp0 powerpc 1:8.35-3ubuntu1 [15.3 kB] Get:42 http://ftpmaster.internal/ubuntu/ vivid/main libsigsegv2 powerpc 2.10-4 [13.7 kB] Get:43 http://ftpmaster.internal/ubuntu/ vivid/main libsm6 powerpc 2:1.2.2-1 [14.2 kB] Get:44 http://ftpmaster.internal/ubuntu/ vivid/main libtcl8.5 powerpc 8.5.15-4ubuntu1 [630 kB] Get:45 http://ftpmaster.internal/ubuntu/ vivid/main libjbig0 powerpc 2.1-3ubuntu1 [25.6 kB] Get:46 http://ftpmaster.internal/ubuntu/ vivid/main libjpeg8 powerpc 8c-2ubuntu8 [2200 B] Get:47 http://ftpmaster.internal/ubuntu/ vivid/main libtiff5 powerpc 4.0.3-10build1 [132 kB] Get:48 http://ftpmaster.internal/ubuntu/ vivid/main libxft2 powerpc 2.3.2-1 [33.3 kB] Get:49 http://ftpmaster.internal/ubuntu/ vivid/main libxss1 powerpc 1:1.2.2-1 [8298 B] Get:50 http://ftpmaster.internal/ubuntu/ vivid/main libtk8.5 powerpc 8.5.15-2ubuntu3 [572 kB] Get:51 http://ftpmaster.internal/ubuntu/ vivid/main libunistring0 powerpc 0.9.3-5ubuntu3 [252 kB] Get:52 http://ftpmaster.internal/ubuntu/ vivid/main libxt6 powerpc 1:1.1.4-1 [174 kB] Get:53 http://ftpmaster.internal/ubuntu/ vivid/main libpython2.7-minimal powerpc 2.7.8-10ubuntu1 [333 kB] Get:54 http://ftpmaster.internal/ubuntu/ vivid/main python2.7-minimal powerpc 2.7.8-10ubuntu1 [1127 kB] Get:55 http://ftpmaster.internal/ubuntu/ vivid/main file powerpc 1:5.19-1ubuntu1.1 [20.0 kB] Get:56 http://ftpmaster.internal/ubuntu/ vivid/main mime-support all 3.55ubuntu1 [31.1 kB] Get:57 http://ftpmaster.internal/ubuntu/ vivid/main netbase all 5.3 [12.9 kB] Get:58 http://ftpmaster.internal/ubuntu/ vivid/main gettext-base powerpc 0.19.2-2ubuntu1 [44.9 kB] Get:59 http://ftpmaster.internal/ubuntu/ vivid/main m4 powerpc 1.4.17-4 [183 kB] Get:60 http://ftpmaster.internal/ubuntu/ vivid/main autoconf all 2.69-8 [321 kB] Get:61 http://ftpmaster.internal/ubuntu/ vivid/main autotools-dev all 20140911.1 [39.6 kB] Get:62 http://ftpmaster.internal/ubuntu/ vivid/main automake all 1:1.14.1-3ubuntu1 [510 kB] Get:63 http://ftpmaster.internal/ubuntu/ vivid/main gettext powerpc 0.19.2-2ubuntu1 [795 kB] Get:64 http://ftpmaster.internal/ubuntu/ vivid/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:65 http://ftpmaster.internal/ubuntu/ vivid/main po-debconf all 1.0.16+nmu3 [207 kB] Get:66 http://ftpmaster.internal/ubuntu/ vivid/main dh-apparmor all 2.8.98-0ubuntu2 [11.0 kB] Get:67 http://ftpmaster.internal/ubuntu/ vivid/main debhelper all 9.20141003ubuntu1 [726 kB] Get:68 http://ftpmaster.internal/ubuntu/ vivid/main liburi-perl all 1.64-1 [84.1 kB] Get:69 http://ftpmaster.internal/ubuntu/ vivid/main libencode-locale-perl all 1.03-1 [12.4 kB] Get:70 http://ftpmaster.internal/ubuntu/ vivid/main libhttp-date-perl all 6.02-1 [10.4 kB] Get:71 http://ftpmaster.internal/ubuntu/ vivid/main libfile-listing-perl all 6.04-1 [9774 B] Get:72 http://ftpmaster.internal/ubuntu/ vivid/main libhtml-tagset-perl all 3.20-2 [13.5 kB] Get:73 http://ftpmaster.internal/ubuntu/ vivid/main libhtml-parser-perl powerpc 3.71-1build2 [88.2 kB] Get:74 http://ftpmaster.internal/ubuntu/ vivid/main libhtml-tree-perl all 5.03-1 [215 kB] Get:75 http://ftpmaster.internal/ubuntu/ vivid/main libio-html-perl all 1.001-1 [14.9 kB] Get:76 http://ftpmaster.internal/ubuntu/ vivid/main liblwp-mediatypes-perl all 6.02-1 [21.7 kB] Get:77 http://ftpmaster.internal/ubuntu/ vivid/main libhttp-message-perl all 6.06-1 [78.7 kB] Get:78 http://ftpmaster.internal/ubuntu/ vivid/main libhttp-cookies-perl all 6.01-1 [17.2 kB] Get:79 http://ftpmaster.internal/ubuntu/ vivid/main libhttp-negotiate-perl all 6.00-2 [13.4 kB] Get:80 http://ftpmaster.internal/ubuntu/ vivid/main libnet-ssleay-perl powerpc 1.65-1build1 [243 kB] Get:81 http://ftpmaster.internal/ubuntu/ vivid/main libio-socket-ssl-perl all 1.965-1ubuntu1 [73.7 kB] Get:82 http://ftpmaster.internal/ubuntu/ vivid/main libnet-http-perl all 6.07-1 [23.8 kB] Get:83 http://ftpmaster.internal/ubuntu/ vivid/main liblwp-protocol-https-perl all 6.06-2 [8682 B] Get:84 http://ftpmaster.internal/ubuntu/ vivid/main libwww-robotrules-perl all 6.01-1 [14.1 kB] Get:85 http://ftpmaster.internal/ubuntu/ vivid/main libwww-perl all 6.08-1 [146 kB] Get:86 http://ftpmaster.internal/ubuntu/ vivid/main libxml-parser-perl powerpc 2.41-3 [202 kB] Get:87 http://ftpmaster.internal/ubuntu/ vivid/main intltool all 0.50.2-2 [52.0 kB] Get:88 http://ftpmaster.internal/ubuntu/ vivid/main dh-translations all 121 [21.6 kB] Get:89 http://ftpmaster.internal/ubuntu/ vivid/main libpython2.7-stdlib powerpc 2.7.8-10ubuntu1 [1723 kB] Get:90 http://ftpmaster.internal/ubuntu/ vivid/main python2.7 powerpc 2.7.8-10ubuntu1 [205 kB] Get:91 http://ftpmaster.internal/ubuntu/ vivid-proposed/main python-minimal powerpc 2.7.8-2 [28.5 kB] Get:92 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libpython-stdlib powerpc 2.7.8-2 [7872 B] Get:93 http://ftpmaster.internal/ubuntu/ vivid-proposed/main python powerpc 2.7.8-2 [138 kB] Get:94 http://ftpmaster.internal/ubuntu/ vivid/main python-scour all 0.26-3build1 [40.5 kB] Get:95 http://ftpmaster.internal/ubuntu/ vivid/main cdbs all 0.4.125ubuntu1 [43.5 kB] Get:96 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libgfortran-4.9-dev powerpc 4.9.1-19ubuntu1 [223 kB] Get:97 http://ftpmaster.internal/ubuntu/ vivid-proposed/main gfortran-4.9 powerpc 4.9.1-19ubuntu1 [4761 kB] Get:98 http://ftpmaster.internal/ubuntu/ vivid/main gfortran powerpc 4:4.9.1-4ubuntu2 [1350 B] Get:99 http://ftpmaster.internal/ubuntu/ vivid/main libblas3 powerpc 1.2.20110419-7ubuntu1 [108 kB] Get:100 http://ftpmaster.internal/ubuntu/ vivid/main libblas-dev powerpc 1.2.20110419-7ubuntu1 [119 kB] Get:101 http://ftpmaster.internal/ubuntu/ vivid/main libbz2-dev powerpc 1.0.6-5ubuntu5 [30.3 kB] Get:102 http://ftpmaster.internal/ubuntu/ vivid/main libjpeg-turbo8-dev powerpc 1.3.0-0ubuntu2 [215 kB] Get:103 http://ftpmaster.internal/ubuntu/ vivid/main libjpeg8-dev powerpc 8c-2ubuntu8 [1550 B] Get:104 http://ftpmaster.internal/ubuntu/ vivid/main libjpeg-dev powerpc 8c-2ubuntu8 [1550 B] Get:105 http://ftpmaster.internal/ubuntu/ vivid/main liblapack3 powerpc 3.5.0-4 [1282 kB] Get:106 http://ftpmaster.internal/ubuntu/ vivid/main liblapack-dev powerpc 3.5.0-4 [1271 kB] Get:107 http://ftpmaster.internal/ubuntu/ vivid/main libtinfo-dev powerpc 5.9+20140712-2ubuntu1 [72.2 kB] Get:108 http://ftpmaster.internal/ubuntu/ vivid/main libncurses5-dev powerpc 5.9+20140712-2ubuntu1 [163 kB] Get:109 http://ftpmaster.internal/ubuntu/ vivid/main libpaper-utils powerpc 1.1.24+nmu2ubuntu3 [8112 B] Get:110 http://ftpmaster.internal/ubuntu/ vivid/main libpcre3-dev powerpc 1:8.35-3ubuntu1 [312 kB] Get:111 http://ftpmaster.internal/ubuntu/ vivid/main zlib1g-dev powerpc 1:1.2.8.dfsg-1ubuntu1 [184 kB] Get:112 http://ftpmaster.internal/ubuntu/ vivid/main libpng12-dev powerpc 1.2.51-0ubuntu3 [208 kB] Get:113 http://ftpmaster.internal/ubuntu/ vivid/main libreadline6-dev powerpc 6.3-8ubuntu1 [118 kB] Get:114 http://ftpmaster.internal/ubuntu/ vivid/main libreadline-dev powerpc 6.3-8ubuntu1 [1048 B] Get:115 http://ftpmaster.internal/ubuntu/ vivid/main zip powerpc 3.0-8 [271 kB] Get:116 http://ftpmaster.internal/ubuntu/ vivid/main unzip powerpc 6.0-12ubuntu1 [149 kB] Get:117 http://ftpmaster.internal/ubuntu/ vivid/main xdg-utils all 1.1.0~rc1-2ubuntu8 [54.1 kB] Get:118 http://ftpmaster.internal/ubuntu/ vivid/universe r-base-core powerpc 3.1.1-1 [19.4 MB] Get:119 http://ftpmaster.internal/ubuntu/ vivid/universe littler powerpc 0.1.5-1 [32.8 kB] Get:120 http://ftpmaster.internal/ubuntu/ vivid/main liblzma-dev powerpc 5.1.1alpha+20120614-2ubuntu2 [137 kB] Get:121 http://ftpmaster.internal/ubuntu/ vivid/universe r-base-dev all 3.1.1-1 [4074 B] Get:122 http://ftpmaster.internal/ubuntu/ vivid/universe r-bioc-biocgenerics all 0.10.0-1 [396 kB] Get:123 http://ftpmaster.internal/ubuntu/ vivid/universe r-cran-codetools all 0.2-9-1 [45.2 kB] Get:124 http://ftpmaster.internal/ubuntu/ vivid/universe r-cran-iterators all 1.0.7-1 [306 kB] Get:125 http://ftpmaster.internal/ubuntu/ vivid/universe r-cran-foreach all 1.4.2-1 [371 kB] Get:126 http://ftpmaster.internal/ubuntu/ vivid/universe r-cran-checkmate powerpc 1.1-1 [234 kB] Get:127 http://ftpmaster.internal/ubuntu/ vivid/universe r-cran-bbmisc powerpc 1.7-1 [262 kB] Get:128 http://ftpmaster.internal/ubuntu/ vivid/universe r-cran-brew powerpc 1.0-6-1 [61.4 kB] Get:129 http://ftpmaster.internal/ubuntu/ vivid/universe r-cran-digest powerpc 0.6.4-1 [80.2 kB] Get:130 http://ftpmaster.internal/ubuntu/ vivid-proposed/universe r-cran-dbi powerpc 0.3.1-1 [156 kB] Get:131 http://ftpmaster.internal/ubuntu/ vivid/universe r-cran-rsqlite powerpc 0.11.4-1 [302 kB] Get:132 http://ftpmaster.internal/ubuntu/ vivid/universe r-cran-rcpp powerpc 0.11.2-1 [1969 kB] Get:133 http://ftpmaster.internal/ubuntu/ vivid/universe r-cran-plyr powerpc 1.8.1-2 [735 kB] Get:134 http://ftpmaster.internal/ubuntu/ vivid/universe r-cran-stringr all 0.6.2-2 [71.2 kB] Get:135 http://ftpmaster.internal/ubuntu/ vivid/universe r-cran-base64enc powerpc 0.1-1-4 [19.3 kB] Get:136 http://ftpmaster.internal/ubuntu/ vivid/universe r-cran-sendmailr powerpc 1.1-2-1 [28.7 kB] Get:137 http://ftpmaster.internal/ubuntu/ vivid/universe r-cran-fail powerpc 1.2-1 [42.6 kB] Get:138 http://ftpmaster.internal/ubuntu/ vivid/universe r-cran-batchjobs powerpc 1.3-1 [366 kB] Get:139 http://ftpmaster.internal/ubuntu/ vivid/universe r-bioc-biocparallel all 0.6.1-1 [321 kB] Get:140 http://ftpmaster.internal/ubuntu/ vivid/universe r-bioc-iranges powerpc 1.22.8-1 [1814 kB] Get:141 http://ftpmaster.internal/ubuntu/ vivid/universe r-bioc-xvector powerpc 0.4.0-1 [330 kB] Get:142 http://ftpmaster.internal/ubuntu/ vivid/universe r-bioc-biostrings powerpc 2.32.0-1 [2240 kB] Get:143 http://ftpmaster.internal/ubuntu/ vivid/universe r-bioc-genomeinfodb all 1.0.2-1 [221 kB] Get:144 http://ftpmaster.internal/ubuntu/ vivid/universe r-bioc-genomicranges powerpc 1.16.3-1 [1097 kB] Get:145 http://ftpmaster.internal/ubuntu/ vivid/universe r-cran-bitops powerpc 1.0-6-1 [23.7 kB] Get:146 http://ftpmaster.internal/ubuntu/ vivid/universe r-bioc-rsamtools powerpc 1.16.1-2 [3117 kB] Get:147 http://ftpmaster.internal/ubuntu/ vivid/universe r-bioc-bsgenome all 1.32.0-1 [763 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 62.4 MB in 7s (8073 kB/s) Selecting previously unselected package libexpat1:powerpc. (Reading database ... 11353 files and directories currently installed.) Preparing to unpack .../libexpat1_2.1.0-6ubuntu1_powerpc.deb ... Unpacking libexpat1:powerpc (2.1.0-6ubuntu1) ... Selecting previously unselected package libmagic1:powerpc. Preparing to unpack .../libmagic1_1%3a5.19-1ubuntu1.1_powerpc.deb ... Unpacking libmagic1:powerpc (1:5.19-1ubuntu1.1) ... Selecting previously unselected package libasprintf0c2:powerpc. Preparing to unpack .../libasprintf0c2_0.19.2-2ubuntu1_powerpc.deb ... Unpacking libasprintf0c2:powerpc (0.19.2-2ubuntu1) ... Selecting previously unselected package libglib2.0-0:powerpc. Preparing to unpack .../libglib2.0-0_2.42.0-2_powerpc.deb ... Unpacking libglib2.0-0:powerpc (2.42.0-2) ... Selecting previously unselected package libpipeline1:powerpc. Preparing to unpack .../libpipeline1_1.3.1-1_powerpc.deb ... Unpacking libpipeline1:powerpc (1.3.1-1) ... Selecting previously unselected package libxau6:powerpc. 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Preparing to unpack .../r-cran-stringr_0.6.2-2_all.deb ... Unpacking r-cran-stringr (0.6.2-2) ... Selecting previously unselected package r-cran-base64enc. Preparing to unpack .../r-cran-base64enc_0.1-1-4_powerpc.deb ... Unpacking r-cran-base64enc (0.1-1-4) ... Selecting previously unselected package r-cran-sendmailr. Preparing to unpack .../r-cran-sendmailr_1.1-2-1_powerpc.deb ... Unpacking r-cran-sendmailr (1.1-2-1) ... Selecting previously unselected package r-cran-fail. Preparing to unpack .../r-cran-fail_1.2-1_powerpc.deb ... Unpacking r-cran-fail (1.2-1) ... Selecting previously unselected package r-cran-batchjobs. Preparing to unpack .../r-cran-batchjobs_1.3-1_powerpc.deb ... Unpacking r-cran-batchjobs (1.3-1) ... Selecting previously unselected package r-bioc-biocparallel. Preparing to unpack .../r-bioc-biocparallel_0.6.1-1_all.deb ... Unpacking r-bioc-biocparallel (0.6.1-1) ... Selecting previously unselected package r-bioc-iranges. Preparing to unpack .../r-bioc-iranges_1.22.8-1_powerpc.deb ... Unpacking r-bioc-iranges (1.22.8-1) ... Selecting previously unselected package r-bioc-xvector. Preparing to unpack .../r-bioc-xvector_0.4.0-1_powerpc.deb ... Unpacking r-bioc-xvector (0.4.0-1) ... Selecting previously unselected package r-bioc-biostrings. Preparing to unpack .../r-bioc-biostrings_2.32.0-1_powerpc.deb ... Unpacking r-bioc-biostrings (2.32.0-1) ... Selecting previously unselected package r-bioc-genomeinfodb. Preparing to unpack .../r-bioc-genomeinfodb_1.0.2-1_all.deb ... Unpacking r-bioc-genomeinfodb (1.0.2-1) ... Selecting previously unselected package r-bioc-genomicranges. Preparing to unpack .../r-bioc-genomicranges_1.16.3-1_powerpc.deb ... Unpacking r-bioc-genomicranges (1.16.3-1) ... Selecting previously unselected package r-cran-bitops. Preparing to unpack .../r-cran-bitops_1.0-6-1_powerpc.deb ... Unpacking r-cran-bitops (1.0-6-1) ... Selecting previously unselected package r-bioc-rsamtools. Preparing to unpack .../r-bioc-rsamtools_1.16.1-2_powerpc.deb ... Unpacking r-bioc-rsamtools (1.16.1-2) ... Selecting previously unselected package r-bioc-bsgenome. Preparing to unpack .../r-bioc-bsgenome_1.32.0-1_all.deb ... Unpacking r-bioc-bsgenome (1.32.0-1) ... Setting up libexpat1:powerpc (2.1.0-6ubuntu1) ... Setting up libmagic1:powerpc (1:5.19-1ubuntu1.1) ... Setting up libasprintf0c2:powerpc (0.19.2-2ubuntu1) ... Setting up libglib2.0-0:powerpc (2.42.0-2) ... No schema files found: doing nothing. Setting up libpipeline1:powerpc (1.3.1-1) ... Setting up libxau6:powerpc (1:1.0.8-1) ... Setting up libxdmcp6:powerpc (1:1.1.1-1build1) ... Setting up libxcb1:powerpc (1.10-2ubuntu1) ... Setting up libx11-data (2:1.6.2-2ubuntu2) ... Setting up libx11-6:powerpc (2:1.6.2-2ubuntu2) ... Setting up libxext6:powerpc (2:1.3.3-1) ... Setting up libxml2:powerpc (2.9.1+dfsg1-4ubuntu1) ... Setting up groff-base (1.22.2-8) ... Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.7.0.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up fonts-dejavu-core (2.34-1ubuntu1) ... Setting up ucf (3.0030) ... Setting up fontconfig-config (2.11.1-0ubuntu3) ... Setting up libfreetype6:powerpc (2.5.2-2ubuntu1) ... Setting up libfontconfig1:powerpc (2.11.1-0ubuntu3) ... Setting up libpixman-1-0:powerpc (0.32.4-1ubuntu1) ... Setting up libxcb-render0:powerpc (1.10-2ubuntu1) ... Setting up libxcb-shm0:powerpc (1.10-2ubuntu1) ... Setting up libxrender1:powerpc (1:0.9.8-1) ... Setting up libcairo2:powerpc (1.13.0~20140204-0ubuntu1) ... Setting up libcroco3:powerpc (0.6.8-3) ... Setting up libdatrie1:powerpc (0.2.8-1) ... Setting up libgfortran3:powerpc (4.9.1-19ubuntu1) ... Setting up libgraphite2-3:powerpc (1.2.4-3ubuntu1) ... Setting up libharfbuzz0b:powerpc (0.9.35-1) ... Setting up x11-common (1:7.7+7ubuntu2) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:powerpc (2:1.0.9-1) ... Setting up libjpeg-turbo8:powerpc (1.3.0-0ubuntu2) ... Setting up libthai-data (0.1.21-1) ... Setting up libthai0:powerpc (0.1.21-1) ... Setting up fontconfig (2.11.1-0ubuntu3) ... Regenerating fonts cache... done. Setting up libpango-1.0-0:powerpc (1.36.6-1) ... Setting up libpangoft2-1.0-0:powerpc (1.36.6-1) ... Setting up libpangocairo-1.0-0:powerpc (1.36.6-1) ... Setting up libpaper1:powerpc (1.1.24+nmu2ubuntu3) ... Creating config file /etc/papersize with new version Setting up libpcrecpp0:powerpc (1:8.35-3ubuntu1) ... Setting up libsigsegv2:powerpc (2.10-4) ... Setting up libsm6:powerpc (2:1.2.2-1) ... Setting up libtcl8.5:powerpc (8.5.15-4ubuntu1) ... Setting up libjbig0:powerpc (2.1-3ubuntu1) ... Setting up libjpeg8:powerpc (8c-2ubuntu8) ... Setting up libtiff5:powerpc (4.0.3-10build1) ... Setting up libxft2:powerpc (2.3.2-1) ... Setting up libxss1:powerpc (1:1.2.2-1) ... Setting up libtk8.5:powerpc (8.5.15-2ubuntu3) ... Setting up libunistring0:powerpc (0.9.3-5ubuntu3) ... Setting up libxt6:powerpc (1:1.1.4-1) ... Setting up libpython2.7-minimal:powerpc (2.7.8-10ubuntu1) ... Setting up python2.7-minimal (2.7.8-10ubuntu1) ... Linking and byte-compiling packages for runtime python2.7... Setting up file (1:5.19-1ubuntu1.1) ... Setting up mime-support (3.55ubuntu1) ... Setting up netbase (5.3) ... Setting up gettext-base (0.19.2-2ubuntu1) ... Setting up m4 (1.4.17-4) ... Setting up autoconf (2.69-8) ... Setting up autotools-dev (20140911.1) ... Setting up automake (1:1.14.1-3ubuntu1) ... update-alternatives: using /usr/bin/automake-1.14 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.2-2ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu3) ... Setting up dh-apparmor (2.8.98-0ubuntu2) ... Setting up debhelper (9.20141003ubuntu1) ... Setting up liburi-perl (1.64-1) ... Setting up libencode-locale-perl (1.03-1) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.71-1build2) ... Setting up libhtml-tree-perl (5.03-1) ... Setting up libio-html-perl (1.001-1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up libhttp-message-perl (6.06-1) ... Setting up libhttp-cookies-perl (6.01-1) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libnet-ssleay-perl (1.65-1build1) ... Setting up libio-socket-ssl-perl (1.965-1ubuntu1) ... Setting up libnet-http-perl (6.07-1) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up libpython2.7-stdlib:powerpc (2.7.8-10ubuntu1) ... Setting up python2.7 (2.7.8-10ubuntu1) ... Setting up python-minimal (2.7.8-2) ... Setting up libpython-stdlib:powerpc (2.7.8-2) ... Setting up python (2.7.8-2) ... Setting up python-scour (0.26-3build1) ... Setting up libgfortran-4.9-dev:powerpc (4.9.1-19ubuntu1) ... Setting up gfortran-4.9 (4.9.1-19ubuntu1) ... Setting up gfortran (4:4.9.1-4ubuntu2) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libblas3 (1.2.20110419-7ubuntu1) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up libblas-dev (1.2.20110419-7ubuntu1) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode Setting up libbz2-dev:powerpc (1.0.6-5ubuntu5) ... Setting up libjpeg-turbo8-dev:powerpc (1.3.0-0ubuntu2) ... Setting up libjpeg8-dev:powerpc (8c-2ubuntu8) ... Setting up libjpeg-dev:powerpc (8c-2ubuntu8) ... Setting up liblapack3 (3.5.0-4) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up liblapack-dev (3.5.0-4) ... update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode Setting up libtinfo-dev:powerpc (5.9+20140712-2ubuntu1) ... Setting up libncurses5-dev:powerpc (5.9+20140712-2ubuntu1) ... Setting up libpaper-utils (1.1.24+nmu2ubuntu3) ... Setting up libpcre3-dev:powerpc (1:8.35-3ubuntu1) ... Setting up zlib1g-dev:powerpc (1:1.2.8.dfsg-1ubuntu1) ... Setting up libpng12-dev:powerpc (1.2.51-0ubuntu3) ... Setting up libreadline6-dev:powerpc (6.3-8ubuntu1) ... Setting up libreadline-dev:powerpc (6.3-8ubuntu1) ... Setting up zip (3.0-8) ... Setting up unzip (6.0-12ubuntu1) ... Setting up xdg-utils (1.1.0~rc1-2ubuntu8) ... Setting up r-base-core (3.1.1-1) ... Creating config file /etc/R/Renviron with new version Setting up littler (0.1.5-1) ... Setting up liblzma-dev:powerpc (5.1.1alpha+20120614-2ubuntu2) ... Setting up r-bioc-biocgenerics (0.10.0-1) ... Setting up r-cran-codetools (0.2-9-1) ... Setting up r-cran-iterators (1.0.7-1) ... Setting up r-cran-foreach (1.4.2-1) ... Setting up r-cran-checkmate (1.1-1) ... Setting up r-cran-bbmisc (1.7-1) ... Setting up r-cran-brew (1.0-6-1) ... Setting up r-cran-digest (0.6.4-1) ... Setting up r-cran-dbi (0.3.1-1) ... Setting up r-cran-rsqlite (0.11.4-1) ... Setting up r-cran-rcpp (0.11.2-1) ... Setting up r-cran-plyr (1.8.1-2) ... Setting up r-cran-stringr (0.6.2-2) ... Setting up r-cran-base64enc (0.1-1-4) ... Setting up r-cran-sendmailr (1.1-2-1) ... Setting up r-cran-fail (1.2-1) ... Setting up r-cran-batchjobs (1.3-1) ... Setting up r-bioc-biocparallel (0.6.1-1) ... Setting up r-bioc-iranges (1.22.8-1) ... Setting up r-bioc-xvector (0.4.0-1) ... Setting up r-bioc-biostrings (2.32.0-1) ... Setting up r-bioc-genomeinfodb (1.0.2-1) ... Setting up r-bioc-genomicranges (1.16.3-1) ... Setting up r-cran-bitops (1.0-6-1) ... Setting up r-bioc-rsamtools (1.16.1-2) ... Setting up r-bioc-bsgenome (1.32.0-1) ... Setting up liblwp-protocol-https-perl (6.06-2) ... Setting up libwww-perl (6.08-1) ... Setting up libxml-parser-perl (2.41-3) ... Setting up intltool (0.50.2-2) ... Setting up dh-translations (121) ... Setting up cdbs (0.4.125ubuntu1) ... Setting up r-base-dev (3.1.1-1) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.19-10ubuntu2 make_4.0-8 dpkg-dev_1.17.13ubuntu1 gcc-4.9_4.9.1-19ubuntu1 g++-4.9_4.9.1-19ubuntu1 binutils_2.24.90.20141023-1ubuntu1 libstdc++-4.9-dev_4.9.1-19ubuntu1 libstdc++6_4.9.1-19ubuntu1 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::Quilt gpgv: Signature made Wed Sep 17 09:12:03 2014 UTC using RSA key ID D1C646D1 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./r-bioc-genomicalignments_1.0.6-1.dsc dpkg-source: info: extracting r-bioc-genomicalignments in r-bioc-genomicalignments-1.0.6 dpkg-source: info: unpacking r-bioc-genomicalignments_1.0.6.orig.tar.gz dpkg-source: info: unpacking r-bioc-genomicalignments_1.0.6-1.debian.tar.xz dpkg-source: info: applying disable-testing-pasillaBamSubset.patch dpkg-buildpackage: source package r-bioc-genomicalignments dpkg-buildpackage: source version 1.0.6-1 dpkg-buildpackage: source distribution unstable dpkg-source --before-build r-bioc-genomicalignments-1.0.6 dpkg-buildpackage: host architecture powerpc /usr/bin/fakeroot debian/rules clean test -x debian/rules dh_clean if test -d src; then \ find src -regex ".*\.o" | \ xargs --no-run-if-empty -r rm; \ fi rm -f config.log config.status rm -f src/*.so debian/rules build-arch test -x debian/rules mkdir -p "." /usr/bin/fakeroot debian/rules binary-arch test -x debian/rules dh_testroot dh_prep dh_installdirs -A mkdir -p "." dh_installdirs usr/lib/R/site-library echo "R:Depends=r-base-core (>= 3.1.1-1)" >> debian/r-bioc-genomicalignments.substvars if test -f /usr/bin/xvfb-run; then \ xvfb-run -a \ R CMD INSTALL -l /build/buildd/r-bioc-genomicalignments-1.0.6/debian/r-bioc-genomicalignments/usr/lib/R/site-library --clean \ . ; \ else \ R CMD INSTALL -l /build/buildd/r-bioc-genomicalignments-1.0.6/debian/r-bioc-genomicalignments/usr/lib/R/site-library \ --clean . ;\ fi * installing *source* package 'GenomicAlignments' ... ** libs make[1]: Entering directory '/build/buildd/r-bioc-genomicalignments-1.0.6/src' gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/IRanges/include" -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c IRanges_stubs.c -o IRanges_stubs.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/IRanges/include" -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c R_init_GenomicAlignments.c -o R_init_GenomicAlignments.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/IRanges/include" -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c cigar_utils.c -o cigar_utils.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/IRanges/include" -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c encodeOverlaps_methods.c -o encodeOverlaps_methods.o gcc -std=gnu99 -shared -Wl,-Bsymbolic-functions -Wl,-z,relro -o GenomicAlignments.so IRanges_stubs.o R_init_GenomicAlignments.o cigar_utils.o encodeOverlaps_methods.o -L/usr/lib/R/lib -lR make[1]: Leaving directory '/build/buildd/r-bioc-genomicalignments-1.0.6/src' make[1]: Entering directory '/build/buildd/r-bioc-genomicalignments-1.0.6/src' make[1]: Leaving directory '/build/buildd/r-bioc-genomicalignments-1.0.6/src' installing to /build/buildd/r-bioc-genomicalignments-1.0.6/debian/r-bioc-genomicalignments/usr/lib/R/site-library/GenomicAlignments/libs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (GenomicAlignments) rm -vf /build/buildd/r-bioc-genomicalignments-1.0.6/debian/r-bioc-genomicalignments/usr/lib/R/site-library/R.css \ /build/buildd/r-bioc-genomicalignments-1.0.6/debian/r-bioc-genomicalignments/usr/lib/R/site-library/GenomicAlignments/COPYING \ /build/buildd/r-bioc-genomicalignments-1.0.6/debian/r-bioc-genomicalignments/usr/lib/R/site-library/GenomicAlignments/LICENSE.txt if test -f debian/overrides; then \ install -d /build/buildd/r-bioc-genomicalignments-1.0.6/debian/r-bioc-genomicalignments/usr/share/lintian/overrides ; \ install -m 0644 debian/overrides \ /build/buildd/r-bioc-genomicalignments-1.0.6/debian/r-bioc-genomicalignments/usr/share/lintian/overrides/r-bioc-genomicalignments; \ fi Adding cdbs dependencies to debian/r-bioc-genomicalignments.substvars dh_installdirs -pr-bioc-genomicalignments dh_installdocs -pr-bioc-genomicalignments dh_installexamples -pr-bioc-genomicalignments dh_installman -pr-bioc-genomicalignments dh_installinfo -pr-bioc-genomicalignments dh_installmenu -pr-bioc-genomicalignments dh_installcron -pr-bioc-genomicalignments dh_installinit -pr-bioc-genomicalignments dh_installdebconf -pr-bioc-genomicalignments dh_installemacsen -pr-bioc-genomicalignments dh_installcatalogs -pr-bioc-genomicalignments dh_installpam -pr-bioc-genomicalignments dh_installlogrotate -pr-bioc-genomicalignments dh_installlogcheck -pr-bioc-genomicalignments dh_installchangelogs -pr-bioc-genomicalignments dh_installudev -pr-bioc-genomicalignments dh_lintian -pr-bioc-genomicalignments dh_bugfiles -pr-bioc-genomicalignments dh_install -pr-bioc-genomicalignments dh_link -pr-bioc-genomicalignments dh_installmime -pr-bioc-genomicalignments dh_installgsettings -pr-bioc-genomicalignments dh_strip -pr-bioc-genomicalignments dh_strip debug symbol extraction: not enabling -a because /CurrentlyBuilding exists dh_strip debug symbol extraction: all non-arch-all packages for this build platform powerpc: r-bioc-genomicalignments dh_strip debug symbol extraction: packages to act on: r-bioc-genomicalignments dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: -is is deprecated; it is without effect dpkg-gencontrol: warning: -ip is deprecated; it is without effect dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package r-bioc-genomicalignments: unused substitution variable ${R:Depends} /usr/bin/pkg_create_dbgsym: building ddeb package dpkg-deb: building package `r-bioc-genomicalignments-dbgsym' in `../r-bioc-genomicalignments-dbgsym_1.0.6-1_powerpc.ddeb'. dh_compress -pr-bioc-genomicalignments dh_fixperms -pr-bioc-genomicalignments dh_makeshlibs -pr-bioc-genomicalignments dh_installdeb -pr-bioc-genomicalignments dh_perl -pr-bioc-genomicalignments dh_shlibdeps -pr-bioc-genomicalignments dh_gencontrol -pr-bioc-genomicalignments dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe # only call dh_scour for packages in main if grep -q '^Component:[[:space:]]*main' /CurrentlyBuilding 2>/dev/null; then dh_scour -pr-bioc-genomicalignments ; fi dh_md5sums -pr-bioc-genomicalignments dh_builddeb -pr-bioc-genomicalignments INFO: pkgstriptranslations version 121 pkgstriptranslations: processing r-bioc-genomicalignments (in debian/r-bioc-genomicalignments); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-bioc-genomicalignments/DEBIAN/control, package r-bioc-genomicalignments, directory debian/r-bioc-genomicalignments pkgstripfiles: PNG optimization for package r-bioc-genomicalignments took 0 s dpkg-deb: warning: 'debian/r-bioc-genomicalignments/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `r-bioc-genomicalignments' in `../r-bioc-genomicalignments_1.0.6-1_powerpc.deb'. dpkg-genchanges -B -mUbuntu/powerpc Build Daemon >../r-bioc-genomicalignments_1.0.6-1_powerpc.changes dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build r-bioc-genomicalignments-1.0.6 dpkg-buildpackage: binary-only upload (no source included) ****************************************************************************** Build finished at 20141025-1740 Publishing debug debs. chroot-autobuild/build/buildd/r-bioc-genomicalignments_1.0.6-1_powerpc.deb: new debian package, version 2.0. size 1240534 bytes: control archive= 2257 bytes. 1016 bytes, 17 lines control 4410 bytes, 45 lines md5sums Package: r-bioc-genomicalignments Version: 1.0.6-1 Architecture: powerpc Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1786 Depends: r-base-core (>= 3.1.1-1), libc6 (>= 2.4), r-bioc-biocgenerics, r-bioc-iranges, r-bioc-genomicranges, r-bioc-biostrings, r-bioc-rsamtools (>= 1.15.26), r-bioc-bsgenome (>= 1.31.12), r-bioc-biocparallel Recommends: r-bioc-shortread Section: gnu-r Priority: optional Homepage: http://bioconductor.org/packages/release/bioc/html/GenomicAlignments.html Description: BioConductor representation and manipulation of short genomic alignments This BioConductor package provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments. chroot-autobuild/build/buildd/r-bioc-genomicalignments_1.0.6-1_powerpc.deb: drwxr-xr-x root/root 0 2014-10-25 17:39 ./ drwxr-xr-x root/root 0 2014-10-25 17:39 ./usr/ drwxr-xr-x root/root 0 2014-10-25 17:39 ./usr/lib/ drwxr-xr-x root/root 0 2014-10-25 17:39 ./usr/lib/R/ drwxr-xr-x root/root 0 2014-10-25 17:39 ./usr/lib/R/site-library/ drwxr-xr-x root/root 0 2014-10-25 17:39 ./usr/lib/R/site-library/GenomicAlignments/ -rw-r--r-- root/root 4899 2014-10-25 17:39 ./usr/lib/R/site-library/GenomicAlignments/NAMESPACE -rw-r--r-- root/root 1902 2014-10-25 17:39 ./usr/lib/R/site-library/GenomicAlignments/DESCRIPTION drwxr-xr-x root/root 0 2014-10-25 17:39 ./usr/lib/R/site-library/GenomicAlignments/Meta/ -rw-r--r-- root/root 1576 2014-10-25 17:39 ./usr/lib/R/site-library/GenomicAlignments/Meta/package.rds -rw-r--r-- root/root 3170 2014-10-25 17:39 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17:39 ./usr/share/ drwxr-xr-x root/root 0 2014-10-25 17:39 ./usr/share/doc/ drwxr-xr-x root/root 0 2014-10-25 17:39 ./usr/share/doc/r-bioc-genomicalignments/ -rw-r--r-- root/root 822 2014-07-08 08:59 ./usr/share/doc/r-bioc-genomicalignments/README.test -rw-r--r-- root/root 5365 2014-06-13 13:40 ./usr/share/doc/r-bioc-genomicalignments/copyright -rw-r--r-- root/root 213 2014-09-17 09:07 ./usr/share/doc/r-bioc-genomicalignments/changelog.Debian.gz r-bioc-genomicalignments_1.0.6-1_powerpc.changes: Format: 1.8 Date: Wed, 17 Sep 2014 11:07:39 +0200 Source: r-bioc-genomicalignments Binary: r-bioc-genomicalignments Architecture: powerpc Version: 1.0.6-1 Distribution: vivid-proposed Urgency: medium Maintainer: Ubuntu/powerpc Build Daemon Changed-By: Andreas Tille Description: r-bioc-genomicalignments - BioConductor representation and manipulation of short genomic ali Changes: r-bioc-genomicalignments (1.0.6-1) unstable; urgency=medium . * New upstream version Checksums-Sha1: 193cccd05722c6476435fc2dcb29dbaccde04c43 1240534 r-bioc-genomicalignments_1.0.6-1_powerpc.deb Checksums-Sha256: 9207460fea64db1ace21ad6880c69f0161bcb5080786bbc418dd54b83db50503 1240534 r-bioc-genomicalignments_1.0.6-1_powerpc.deb Files: ad1714285a4120c51a92126f4f7ca610 1240534 gnu-r optional r-bioc-genomicalignments_1.0.6-1_powerpc.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20141025-1740 Build needed 00:01:08, 6240k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-6500019'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-6500019/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-6500019'] Unmounting chroot for build PACKAGEBUILD-6500019... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-6500019'] Removing build PACKAGEBUILD-6500019