https://launchpad.net/ubuntu/+source/r-bioc-genomicranges/1.42.0+dfsg-1/+build/20240103 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-s390x-020 4.15.0-122-generic #124-Ubuntu SMP Thu Oct 15 13:02:05 UTC 2020 s390x Buildd toolchain package versions: launchpad-buildd_193~468~ubuntu18.04.1 python3-lpbuildd_193~468~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.7 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 5 Nov 11:18:43 ntpdate[1713]: adjust time server 10.211.37.1 offset -0.000475 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=hirsute --arch=s390x PACKAGEBUILD-20240103 --image-type chroot /home/buildd/filecache-default/9aaab3d1c3367126bc5b66d2474faf9141147628 Creating target for build PACKAGEBUILD-20240103 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=hirsute --arch=s390x PACKAGEBUILD-20240103 Starting target for build PACKAGEBUILD-20240103 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=hirsute --arch=s390x PACKAGEBUILD-20240103 'deb http://ftpmaster.internal/ubuntu hirsute main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-security main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-updates main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-20240103 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=hirsute --arch=s390x PACKAGEBUILD-20240103 Updating target for build PACKAGEBUILD-20240103 Get:1 http://ftpmaster.internal/ubuntu hirsute InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute-security InRelease [88.4 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute-updates InRelease [88.4 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute-proposed InRelease [117 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute/main s390x Packages [1320 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main Translation-en [508 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/universe s390x Packages [12.1 MB] Get:8 http://ftpmaster.internal/ubuntu hirsute/universe Translation-en [5323 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x Packages [172 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute-proposed/main Translation-en [70.4 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/universe s390x Packages [1443 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute-proposed/universe Translation-en [501 kB] Fetched 22.0 MB in 4s (5451 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt base-files base-passwd binutils binutils-common binutils-s390x-linux-gnu cpp-10 g++-10 gcc-10 gcc-10-base libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libaudit-common libaudit1 libbinutils libc-bin libc-dev-bin libc6 libc6-dev libcap2 libcc1-0 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libdebconfclient0 libgcc-10-dev libgcc-s1 libgomp1 libidn2-0 libip4tc2 libitm1 libmpc3 libncurses6 libncursesw6 libnpth0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libstdc++-10-dev libstdc++6 libsystemd0 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libubsan1 libudev1 linux-libc-dev ncurses-base ncurses-bin systemd systemd-sysv systemd-timesyncd sysvinit-utils tzdata 59 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 204 MB of archives. After this operation, 772 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libcrypt-dev s390x 1:4.4.17-1ubuntu1 [111 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libcrypt1 s390x 1:4.4.17-1ubuntu1 [84.3 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libc6-dev s390x 2.32-0ubuntu4 [1744 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libc-dev-bin s390x 2.32-0ubuntu4 [29.8 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x linux-libc-dev s390x 5.8.0-26.27 [1165 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libtirpc-common all 1.2.6-3 [7444 B] Get:7 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libtirpc-dev s390x 1.2.6-3 [190 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libtirpc3 s390x 1.2.6-3 [75.2 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libcc1-0 s390x 10.2.0-16ubuntu1 [39.4 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x gcc-10-base s390x 10.2.0-16ubuntu1 [19.7 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libgcc-s1 s390x 10.2.0-16ubuntu1 [30.4 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libgomp1 s390x 10.2.0-16ubuntu1 [115 kB] Get:13 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libitm1 s390x 10.2.0-16ubuntu1 [28.6 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libatomic1 s390x 10.2.0-16ubuntu1 [8368 B] Get:15 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libasan6 s390x 10.2.0-16ubuntu1 [351 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libubsan1 s390x 10.2.0-16ubuntu1 [155 kB] Get:17 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x g++-10 s390x 10.2.0-16ubuntu1 [63.1 MB] Get:18 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libstdc++-10-dev s390x 10.2.0-16ubuntu1 [1735 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libgcc-10-dev s390x 10.2.0-16ubuntu1 [779 kB] Get:20 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x gcc-10 s390x 10.2.0-16ubuntu1 [63.9 MB] Get:21 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x cpp-10 s390x 10.2.0-16ubuntu1 [56.7 MB] Get:22 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libstdc++6 s390x 10.2.0-16ubuntu1 [519 kB] Get:23 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libmpc3 s390x 1.2.0-1 [43.6 kB] Get:24 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libctf-nobfd0 s390x 2.35.1-2ubuntu1 [50.4 kB] Get:25 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libctf0 s390x 2.35.1-2ubuntu1 [49.5 kB] Get:26 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libbinutils s390x 2.35.1-2ubuntu1 [338 kB] Get:27 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x binutils-common s390x 2.35.1-2ubuntu1 [212 kB] Get:28 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x binutils s390x 2.35.1-2ubuntu1 [3344 B] Get:29 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x binutils-s390x-linux-gnu s390x 2.35.1-2ubuntu1 [1691 kB] Get:30 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libc6 s390x 2.32-0ubuntu4 [2334 kB] Get:31 http://ftpmaster.internal/ubuntu hirsute/main s390x base-files s390x 11ubuntu16 [60.4 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libncursesw6 s390x 6.2+20200918-1 [136 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libncurses6 s390x 6.2+20200918-1 [106 kB] Get:34 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libtinfo6 s390x 6.2+20200918-1 [92.5 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x ncurses-bin s390x 6.2+20200918-1 [176 kB] Get:36 http://ftpmaster.internal/ubuntu hirsute/main s390x libdebconfclient0 s390x 0.254ubuntu1 [6056 B] Get:37 http://ftpmaster.internal/ubuntu hirsute/main s390x base-passwd s390x 3.5.48 [48.5 kB] Get:38 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libc-bin s390x 2.32-0ubuntu4 [589 kB] Get:39 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x ncurses-base all 6.2+20200918-1 [18.7 kB] Get:40 http://ftpmaster.internal/ubuntu hirsute/main s390x sysvinit-utils s390x 2.96-5ubuntu1 [20.6 kB] Get:41 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x systemd-timesyncd s390x 246.6-2ubuntu1 [27.2 kB] Get:42 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x systemd-sysv s390x 246.6-2ubuntu1 [10.3 kB] Get:43 http://ftpmaster.internal/ubuntu hirsute/main s390x libapparmor1 s390x 3.0.0-0ubuntu2 [36.6 kB] Get:44 http://ftpmaster.internal/ubuntu hirsute/main s390x libaudit-common all 1:2.8.5-3ubuntu2 [4092 B] Get:45 http://ftpmaster.internal/ubuntu hirsute/main s390x libaudit1 s390x 1:2.8.5-3ubuntu2 [38.1 kB] Get:46 http://ftpmaster.internal/ubuntu hirsute/main s390x libcap2 s390x 1:2.44-1 [18.3 kB] Get:47 http://ftpmaster.internal/ubuntu hirsute/main s390x libidn2-0 s390x 2.3.0-2 [51.7 kB] Get:48 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libip4tc2 s390x 1.8.5-3ubuntu3 [20.0 kB] Get:49 http://ftpmaster.internal/ubuntu hirsute/main s390x libseccomp2 s390x 2.4.3-1ubuntu5 [56.3 kB] Get:50 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x systemd s390x 246.6-2ubuntu1 [4293 kB] Get:51 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libsystemd0 s390x 246.6-2ubuntu1 [292 kB] Get:52 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libudev1 s390x 246.6-2ubuntu1 [73.2 kB] Get:53 http://ftpmaster.internal/ubuntu hirsute/main s390x libapt-pkg6.0 s390x 2.1.11 [848 kB] Get:54 http://ftpmaster.internal/ubuntu hirsute/main s390x apt s390x 2.1.11 [1285 kB] Get:55 http://ftpmaster.internal/ubuntu hirsute/main s390x libselinux1 s390x 3.1-2build1 [75.3 kB] Get:56 http://ftpmaster.internal/ubuntu hirsute/main s390x libsemanage-common all 3.1-1build1 [10.1 kB] Get:57 http://ftpmaster.internal/ubuntu hirsute/main s390x libsemanage1 s390x 3.1-1build1 [88.2 kB] Get:58 http://ftpmaster.internal/ubuntu hirsute/main s390x tzdata all 2020d-1ubuntu1 [293 kB] Get:59 http://ftpmaster.internal/ubuntu hirsute/main s390x libnpth0 s390x 1.6-3 [8048 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 204 MB in 10s (20.2 MB/s) (Reading database ... 12766 files and directories currently installed.) Preparing to unpack .../libcrypt-dev_1%3a4.4.17-1ubuntu1_s390x.deb ... Unpacking libcrypt-dev:s390x (1:4.4.17-1ubuntu1) over (1:4.4.16-1ubuntu1) ... Preparing to unpack .../libcrypt1_1%3a4.4.17-1ubuntu1_s390x.deb ... Unpacking libcrypt1:s390x (1:4.4.17-1ubuntu1) over (1:4.4.16-1ubuntu1) ... Setting up libcrypt1:s390x (1:4.4.17-1ubuntu1) ... (Reading database ... 12766 files and directories currently installed.) Preparing to unpack .../0-libc6-dev_2.32-0ubuntu4_s390x.deb ... Unpacking libc6-dev:s390x (2.32-0ubuntu4) over (2.32-0ubuntu3) ... Preparing to unpack .../1-libc-dev-bin_2.32-0ubuntu4_s390x.deb ... Unpacking libc-dev-bin (2.32-0ubuntu4) over (2.32-0ubuntu3) ... Preparing to unpack .../2-linux-libc-dev_5.8.0-26.27_s390x.deb ... Unpacking linux-libc-dev:s390x (5.8.0-26.27) over (5.8.0-25.26) ... Preparing to unpack .../3-libtirpc-common_1.2.6-3_all.deb ... Unpacking libtirpc-common (1.2.6-3) over (1.2.6-1build1) ... Preparing to unpack .../4-libtirpc-dev_1.2.6-3_s390x.deb ... 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Unpacking apt (2.1.11) over (2.1.10) ... Setting up apt (2.1.11) ... (Reading database ... 12765 files and directories currently installed.) Preparing to unpack .../libselinux1_3.1-2build1_s390x.deb ... Unpacking libselinux1:s390x (3.1-2build1) over (3.1-2) ... Setting up libselinux1:s390x (3.1-2build1) ... (Reading database ... 12765 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.1-1build1_all.deb ... Unpacking libsemanage-common (3.1-1build1) over (3.1-1) ... Setting up libsemanage-common (3.1-1build1) ... (Reading database ... 12765 files and directories currently installed.) Preparing to unpack .../libsemanage1_3.1-1build1_s390x.deb ... Unpacking libsemanage1:s390x (3.1-1build1) over (3.1-1) ... Setting up libsemanage1:s390x (3.1-1build1) ... (Reading database ... 12765 files and directories currently installed.) Preparing to unpack .../tzdata_2020d-1ubuntu1_all.deb ... Unpacking tzdata (2020d-1ubuntu1) over (2020b-1ubuntu1) ... Preparing to unpack .../libnpth0_1.6-3_s390x.deb ... Unpacking libnpth0:s390x (1.6-3) over (1.6-2) ... Setting up libip4tc2:s390x (1.8.5-3ubuntu3) ... Setting up libapparmor1:s390x (3.0.0-0ubuntu2) ... Setting up libtirpc-common (1.2.6-3) ... Setting up binutils-common:s390x (2.35.1-2ubuntu1) ... Setting up linux-libc-dev:s390x (5.8.0-26.27) ... Setting up libctf-nobfd0:s390x (2.35.1-2ubuntu1) ... Setting up libnpth0:s390x (1.6-3) ... Setting up libgomp1:s390x (10.2.0-16ubuntu1) ... Setting up libcap2:s390x (1:2.44-1) ... Setting up libasan6:s390x (10.2.0-16ubuntu1) ... Setting up tzdata (2020d-1ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Nov 5 11:19:26 UTC 2020. Universal Time is now: Thu Nov 5 11:19:26 UTC 2020. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libncurses6:s390x (6.2+20200918-1) ... Setting up libmpc3:s390x (1.2.0-1) ... Setting up libatomic1:s390x (10.2.0-16ubuntu1) ... Setting up libncursesw6:s390x (6.2+20200918-1) ... Setting up libubsan1:s390x (10.2.0-16ubuntu1) ... Setting up libcrypt-dev:s390x (1:4.4.17-1ubuntu1) ... Setting up libbinutils:s390x (2.35.1-2ubuntu1) ... Setting up libc-dev-bin (2.32-0ubuntu4) ... Setting up libcc1-0:s390x (10.2.0-16ubuntu1) ... Setting up cpp-10 (10.2.0-16ubuntu1) ... Setting up libitm1:s390x (10.2.0-16ubuntu1) ... Setting up libctf0:s390x (2.35.1-2ubuntu1) ... Setting up libtirpc3:s390x (1.2.6-3) ... Setting up binutils-s390x-linux-gnu (2.35.1-2ubuntu1) ... Setting up libgcc-10-dev:s390x (10.2.0-16ubuntu1) ... Setting up binutils (2.35.1-2ubuntu1) ... Setting up libtirpc-dev:s390x (1.2.6-3) ... Setting up gcc-10 (10.2.0-16ubuntu1) ... Setting up libc6-dev:s390x (2.32-0ubuntu4) ... Setting up libstdc++-10-dev:s390x (10.2.0-16ubuntu1) ... Setting up g++-10 (10.2.0-16ubuntu1) ... Setting up systemd (246.6-2ubuntu1) ... Initializing machine ID from random generator. Setting up systemd-timesyncd (246.6-2ubuntu1) ... Setting up systemd-sysv (246.6-2ubuntu1) ... Processing triggers for libc-bin (2.32-0ubuntu4) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-20240103 s390x hirsute-proposed -c chroot:build-PACKAGEBUILD-20240103 --arch=s390x --dist=hirsute-proposed --nolog r-bioc-genomicranges_1.42.0+dfsg-1.dsc Initiating build PACKAGEBUILD-20240103 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-122-generic #124-Ubuntu SMP Thu Oct 15 13:02:05 UTC 2020 s390x sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-s390x-020.buildd +==============================================================================+ | r-bioc-genomicranges 1.42.0+dfsg-1 (s390x) Thu, 05 Nov 2020 11:19:27 +0000 | +==============================================================================+ Package: r-bioc-genomicranges Version: 1.42.0+dfsg-1 Source Version: 1.42.0+dfsg-1 Distribution: hirsute-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-20240103/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-bioc-genomicranges_1.42.0+dfsg-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/r-bioc-genomicranges-w1Jw20/r-bioc-genomicranges-1.42.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-genomicranges-w1Jw20' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-UrZMmn/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-UrZMmn/apt_archive ./ InRelease Get:2 copy:/<>/resolver-UrZMmn/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-UrZMmn/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-UrZMmn/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-UrZMmn/apt_archive ./ Packages [432 B] Fetched 1738 B in 0s (136 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-UrZMmn/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12765 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.25.3), r-bioc-s4vectors (>= 0.27.12), r-bioc-iranges (>= 2.23.9), r-bioc-genomeinfodb (>= 1.15.2), r-bioc-xvector (>= 0.29.2) Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.25.3), r-bioc-s4vectors (>= 0.27.12), r-bioc-iranges (>= 2.23.9), r-bioc-genomeinfodb (>= 1.15.2), r-bioc-xvector (>= 0.29.2) dpkg-deb: building package 'sbuild-build-depends-r-bioc-genomicranges-dummy' in '/<>/resolver-UrZMmn/apt_archive/sbuild-build-depends-r-bioc-genomicranges-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-genomicranges-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-UrZMmn/apt_archive ./ InRelease Get:2 copy:/<>/resolver-UrZMmn/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-UrZMmn/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-UrZMmn/apt_archive ./ Sources [578 B] Get:5 copy:/<>/resolver-UrZMmn/apt_archive ./ Packages [662 B] Fetched 2203 B in 0s (0 B/s) Reading package lists... Reading package lists... Install r-bioc-genomicranges build dependencies (apt-based resolver) -------------------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-10 groff-base icu-devtools intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-10-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi3-heimdal libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu-dev libicu67 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libkrb5-26-heimdal liblapack-dev liblapack3 libldap-2.4-2 liblzma-dev libmagic-mgc libmagic1 libncurses-dev libncurses5-dev libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db pkg-config po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-iranges r-bioc-s4vectors r-bioc-xvector r-bioc-zlibbioc r-cran-bitops r-cran-rcurl ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-10-multilib gfortran-10-doc libcoarrays-dev groff liblapack-doc icu-doc liblzma-doc ncurses-doc readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk m4-doc apparmor less www-browser libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo r-bioc-biobase r-bioc-genomicranges r-bioc-delayedarray r-bioc-biostrings r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-bsgenome r-bioc-biocstyle r-cran-knitr r-bioc-summarizedexperiment r-cran-matrix r-bioc-shortread r-bioc-graph r-cran-data.table r-cran-xml Recommended packages: devscripts curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libldap-common libpng-tools publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl r-recommended r-doc-html r-cran-runit r-bioc-genomicranges libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-10 groff-base icu-devtools intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-10-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi3-heimdal libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu-dev libicu67 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libkrb5-26-heimdal liblapack-dev liblapack3 libldap-2.4-2 liblzma-dev libmagic-mgc libmagic1 libncurses-dev libncurses5-dev libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db pkg-config po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-iranges r-bioc-s4vectors r-bioc-xvector r-bioc-zlibbioc r-cran-bitops r-cran-rcurl sbuild-build-depends-r-bioc-genomicranges-dummy ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 143 newly installed, 0 to remove and 0 not upgraded. Need to get 148 MB of archives. After this operation, 544 MB of additional disk space will be used. Get:1 copy:/<>/resolver-UrZMmn/apt_archive ./ sbuild-build-depends-r-bioc-genomicranges-dummy 0.invalid.0 [952 B] Get:2 http://ftpmaster.internal/ubuntu hirsute/main s390x bsdextrautils s390x 2.36-3ubuntu1 [77.4 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute/main s390x libuchardet0 s390x 0.0.7-1 [67.5 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute/main s390x groff-base s390x 1.22.4-5 [812 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute/main s390x libpipeline1 s390x 1.5.3-1 [28.7 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main s390x man-db s390x 2.9.3-2 [1106 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/main s390x libmagic-mgc s390x 1:5.38-5 [219 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute/main s390x libmagic1 s390x 1:5.38-5 [72.9 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute/main s390x file s390x 1:5.38-5 [23.1 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute/main s390x libbsd0 s390x 0.10.0-1 [43.7 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute/main s390x libelf1 s390x 0.181-1 [48.0 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libexpat1 s390x 2.2.10-1 [86.5 kB] Get:13 http://ftpmaster.internal/ubuntu hirsute/main s390x libfribidi0 s390x 1.0.8-2 [24.6 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libglib2.0-0 s390x 2.66.2-1 [1321 kB] Get:15 http://ftpmaster.internal/ubuntu hirsute/main s390x libicu67 s390x 67.1-4 [8473 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libxml2 s390x 2.9.10+dfsg-6.2 [645 kB] Get:17 http://ftpmaster.internal/ubuntu hirsute/main s390x ucf all 3.0043 [56.1 kB] Get:18 http://ftpmaster.internal/ubuntu hirsute/main s390x gettext-base s390x 0.19.8.1-10build1 [49.0 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute/main s390x libpsl5 s390x 0.21.0-1.1ubuntu1 [52.5 kB] Get:20 http://ftpmaster.internal/ubuntu hirsute/main s390x libxau6 s390x 1:1.0.9-0ubuntu1 [7212 B] Get:21 http://ftpmaster.internal/ubuntu hirsute/main s390x libxdmcp6 s390x 1:1.1.3-0ubuntu1 [10.4 kB] Get:22 http://ftpmaster.internal/ubuntu hirsute/main s390x libxcb1 s390x 1.14-2 [42.3 kB] Get:23 http://ftpmaster.internal/ubuntu hirsute/main s390x libx11-data all 2:1.6.12-1 [113 kB] Get:24 http://ftpmaster.internal/ubuntu hirsute/main s390x libx11-6 s390x 2:1.6.12-1 [576 kB] Get:25 http://ftpmaster.internal/ubuntu hirsute/main s390x libxext6 s390x 2:1.3.4-0ubuntu1 [27.0 kB] Get:26 http://ftpmaster.internal/ubuntu hirsute/main s390x libxmuu1 s390x 2:1.1.3-0ubuntu1 [9568 B] Get:27 http://ftpmaster.internal/ubuntu hirsute/main s390x xauth s390x 1:1.1-0ubuntu1 [23.6 kB] Get:28 http://ftpmaster.internal/ubuntu hirsute/main s390x libsigsegv2 s390x 2.12-2build1 [13.7 kB] Get:29 http://ftpmaster.internal/ubuntu hirsute/main s390x m4 s390x 1.4.18-4 [196 kB] Get:30 http://ftpmaster.internal/ubuntu hirsute/main s390x autoconf all 2.69-11.1 [321 kB] Get:31 http://ftpmaster.internal/ubuntu hirsute/main s390x autotools-dev all 20180224.1 [39.6 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute/main s390x automake all 1:1.16.2-4ubuntu1 [548 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute/main s390x autopoint all 0.19.8.1-10build1 [412 kB] Get:34 http://ftpmaster.internal/ubuntu hirsute/main s390x dctrl-tools s390x 2.24-3 [58.7 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute/main s390x libtool all 2.4.6-14 [161 kB] Get:36 http://ftpmaster.internal/ubuntu hirsute/main s390x dh-autoreconf all 19 [16.1 kB] Get:37 http://ftpmaster.internal/ubuntu hirsute/main s390x libdebhelper-perl all 13.2.1ubuntu1 [63.6 kB] Get:38 http://ftpmaster.internal/ubuntu hirsute/main s390x libarchive-zip-perl all 1.68-1 [90.2 kB] Get:39 http://ftpmaster.internal/ubuntu hirsute/main s390x libsub-override-perl all 0.09-2 [9532 B] Get:40 http://ftpmaster.internal/ubuntu hirsute/main s390x libfile-stripnondeterminism-perl all 1.9.0-1 [17.2 kB] Get:41 http://ftpmaster.internal/ubuntu hirsute/main s390x dh-strip-nondeterminism all 1.9.0-1 [5192 B] Get:42 http://ftpmaster.internal/ubuntu hirsute/main s390x dwz s390x 0.13-5 [146 kB] Get:43 http://ftpmaster.internal/ubuntu hirsute/main s390x libcroco3 s390x 0.6.13-1 [73.7 kB] Get:44 http://ftpmaster.internal/ubuntu hirsute/main s390x gettext s390x 0.19.8.1-10build1 [867 kB] Get:45 http://ftpmaster.internal/ubuntu hirsute/main s390x intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:46 http://ftpmaster.internal/ubuntu hirsute/main s390x po-debconf all 1.0.21 [233 kB] Get:47 http://ftpmaster.internal/ubuntu hirsute/main s390x debhelper all 13.2.1ubuntu1 [879 kB] Get:48 http://ftpmaster.internal/ubuntu hirsute/main s390x zip s390x 3.0-11build1 [157 kB] Get:49 http://ftpmaster.internal/ubuntu hirsute/main s390x unzip s390x 6.0-25ubuntu1 [157 kB] Get:50 http://ftpmaster.internal/ubuntu hirsute/main s390x libpaper1 s390x 1.1.28 [12.7 kB] Get:51 http://ftpmaster.internal/ubuntu hirsute/main s390x libpaper-utils s390x 1.1.28 [8184 B] Get:52 http://ftpmaster.internal/ubuntu hirsute/main s390x xdg-utils all 1.1.3-2ubuntu1 [61.6 kB] Get:53 http://ftpmaster.internal/ubuntu hirsute/main s390x libblas3 s390x 3.9.0-3ubuntu1 [131 kB] Get:54 http://ftpmaster.internal/ubuntu hirsute/main s390x libbrotli1 s390x 1.0.9-2build1 [270 kB] Get:55 http://ftpmaster.internal/ubuntu hirsute/main s390x libfreetype6 s390x 2.10.2+dfsg-3ubuntu1 [383 kB] Get:56 http://ftpmaster.internal/ubuntu hirsute/main s390x fonts-dejavu-core all 2.37-2 [1041 kB] Get:57 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x fontconfig-config all 2.13.1-4.2ubuntu2 [28.6 kB] Get:58 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libfontconfig1 s390x 2.13.1-4.2ubuntu2 [152 kB] Get:59 http://ftpmaster.internal/ubuntu hirsute/main s390x libpixman-1-0 s390x 0.38.4-0ubuntu1 [136 kB] Get:60 http://ftpmaster.internal/ubuntu hirsute/main s390x libxcb-render0 s390x 1.14-2 [14.7 kB] Get:61 http://ftpmaster.internal/ubuntu hirsute/main s390x libxcb-shm0 s390x 1.14-2 [5416 B] Get:62 http://ftpmaster.internal/ubuntu hirsute/main s390x libxrender1 s390x 1:0.9.10-1 [17.8 kB] Get:63 http://ftpmaster.internal/ubuntu hirsute/main s390x libcairo2 s390x 1.16.0-4ubuntu1 [535 kB] Get:64 http://ftpmaster.internal/ubuntu hirsute/main s390x libroken18-heimdal s390x 7.7.0+dfsg-2 [40.0 kB] Get:65 http://ftpmaster.internal/ubuntu hirsute/main s390x libasn1-8-heimdal s390x 7.7.0+dfsg-2 [148 kB] Get:66 http://ftpmaster.internal/ubuntu hirsute/main s390x libheimbase1-heimdal s390x 7.7.0+dfsg-2 [27.7 kB] Get:67 http://ftpmaster.internal/ubuntu hirsute/main s390x libhcrypto4-heimdal s390x 7.7.0+dfsg-2 [83.1 kB] Get:68 http://ftpmaster.internal/ubuntu hirsute/main s390x libwind0-heimdal s390x 7.7.0+dfsg-2 [47.7 kB] Get:69 http://ftpmaster.internal/ubuntu hirsute/main s390x libhx509-5-heimdal s390x 7.7.0+dfsg-2 [97.9 kB] Get:70 http://ftpmaster.internal/ubuntu hirsute/main s390x libkrb5-26-heimdal s390x 7.7.0+dfsg-2 [191 kB] Get:71 http://ftpmaster.internal/ubuntu hirsute/main s390x libheimntlm0-heimdal s390x 7.7.0+dfsg-2 [14.4 kB] Get:72 http://ftpmaster.internal/ubuntu hirsute/main s390x libgssapi3-heimdal s390x 7.7.0+dfsg-2 [87.2 kB] Get:73 http://ftpmaster.internal/ubuntu hirsute/main s390x libsasl2-modules-db s390x 2.1.27+dfsg-2ubuntu1 [14.5 kB] Get:74 http://ftpmaster.internal/ubuntu hirsute/main s390x libsasl2-2 s390x 2.1.27+dfsg-2ubuntu1 [48.8 kB] Get:75 http://ftpmaster.internal/ubuntu hirsute/main s390x libldap-2.4-2 s390x 2.4.53+dfsg-1ubuntu1 [159 kB] Get:76 http://ftpmaster.internal/ubuntu hirsute/main s390x libnghttp2-14 s390x 1.41.0-3 [72.3 kB] Get:77 http://ftpmaster.internal/ubuntu hirsute/main s390x librtmp1 s390x 2.4+20151223.gitfa8646d.1-2build2 [50.7 kB] Get:78 http://ftpmaster.internal/ubuntu hirsute/main s390x libssh-4 s390x 0.9.4-1ubuntu3 [174 kB] Get:79 http://ftpmaster.internal/ubuntu hirsute/main s390x libcurl4 s390x 7.68.0-1ubuntu4 [218 kB] Get:80 http://ftpmaster.internal/ubuntu hirsute/main s390x libjpeg-turbo8 s390x 2.0.3-0ubuntu2 [102 kB] Get:81 http://ftpmaster.internal/ubuntu hirsute/main s390x libjpeg8 s390x 8c-2ubuntu8 [2142 B] Get:82 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libgfortran5 s390x 10.2.0-16ubuntu1 [414 kB] Get:83 http://ftpmaster.internal/ubuntu hirsute/main s390x liblapack3 s390x 3.9.0-3ubuntu1 [1731 kB] Get:84 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x fontconfig s390x 2.13.1-4.2ubuntu2 [182 kB] Get:85 http://ftpmaster.internal/ubuntu hirsute/main s390x libgraphite2-3 s390x 1.3.14-1 [67.9 kB] Get:86 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libharfbuzz0b s390x 2.6.7-1ubuntu1 [334 kB] Get:87 http://ftpmaster.internal/ubuntu hirsute/main s390x libthai-data all 0.1.28-3 [134 kB] Get:88 http://ftpmaster.internal/ubuntu hirsute/main s390x libdatrie1 s390x 0.2.12-3 [18.1 kB] Get:89 http://ftpmaster.internal/ubuntu hirsute/main s390x libthai0 s390x 0.1.28-3 [18.1 kB] Get:90 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libpango-1.0-0 s390x 1.46.2-2 [174 kB] Get:91 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libpangoft2-1.0-0 s390x 1.46.2-2 [35.0 kB] Get:92 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libpangocairo-1.0-0 s390x 1.46.2-2 [25.0 kB] Get:93 http://ftpmaster.internal/ubuntu hirsute/main s390x libtcl8.6 s390x 8.6.10+dfsg-1 [838 kB] Get:94 http://ftpmaster.internal/ubuntu hirsute/main s390x libjbig0 s390x 2.1-3.1build1 [26.3 kB] Get:95 http://ftpmaster.internal/ubuntu hirsute/main s390x libwebp6 s390x 0.6.1-2 [149 kB] Get:96 http://ftpmaster.internal/ubuntu hirsute/main s390x libtiff5 s390x 4.1.0+git191117-2build1 [151 kB] Get:97 http://ftpmaster.internal/ubuntu hirsute/main s390x libxft2 s390x 2.3.3-0ubuntu1 [36.8 kB] Get:98 http://ftpmaster.internal/ubuntu hirsute/main s390x x11-common all 1:7.7+19ubuntu15 [22.2 kB] Get:99 http://ftpmaster.internal/ubuntu hirsute/main s390x libxss1 s390x 1:1.2.3-1 [7972 B] Get:100 http://ftpmaster.internal/ubuntu hirsute/main s390x libtk8.6 s390x 8.6.10-1 [672 kB] Get:101 http://ftpmaster.internal/ubuntu hirsute/main s390x libice6 s390x 2:1.0.10-1 [39.5 kB] Get:102 http://ftpmaster.internal/ubuntu hirsute/main s390x libsm6 s390x 2:1.2.3-1 [15.2 kB] Get:103 http://ftpmaster.internal/ubuntu hirsute/main s390x libxt6 s390x 1:1.2.0-1 [169 kB] Get:104 http://ftpmaster.internal/ubuntu hirsute/universe s390x r-base-core s390x 4.0.2-1build1 [24.9 MB] Get:105 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libgfortran-10-dev s390x 10.2.0-16ubuntu1 [469 kB] Get:106 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x gfortran-10 s390x 10.2.0-16ubuntu1 [57.7 MB] Get:107 http://ftpmaster.internal/ubuntu hirsute/main s390x gfortran s390x 4:10.2.0-1ubuntu1 [1372 B] Get:108 http://ftpmaster.internal/ubuntu hirsute/main s390x libblas-dev s390x 3.9.0-3ubuntu1 [135 kB] Get:109 http://ftpmaster.internal/ubuntu hirsute/main s390x liblapack-dev s390x 3.9.0-3ubuntu1 [3374 kB] Get:110 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libncurses-dev s390x 6.2+20200918-1 [382 kB] Get:111 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libncurses5-dev s390x 6.2+20200918-1 [992 B] Get:112 http://ftpmaster.internal/ubuntu hirsute/main s390x libreadline-dev s390x 8.0-4 [141 kB] Get:113 http://ftpmaster.internal/ubuntu hirsute/main s390x libjpeg-turbo8-dev s390x 2.0.3-0ubuntu2 [214 kB] Get:114 http://ftpmaster.internal/ubuntu hirsute/main s390x libjpeg8-dev s390x 8c-2ubuntu8 [1612 B] Get:115 http://ftpmaster.internal/ubuntu hirsute/main s390x libjpeg-dev s390x 8c-2ubuntu8 [1612 B] Get:116 http://ftpmaster.internal/ubuntu hirsute/main s390x libpcre2-16-0 s390x 10.34-7 [103 kB] Get:117 http://ftpmaster.internal/ubuntu hirsute/main s390x libpcre2-32-0 s390x 10.34-7 [95.6 kB] Get:118 http://ftpmaster.internal/ubuntu hirsute/main s390x libpcre2-posix2 s390x 10.34-7 [5872 B] Get:119 http://ftpmaster.internal/ubuntu hirsute/main s390x libpcre2-dev s390x 10.34-7 [485 kB] Get:120 http://ftpmaster.internal/ubuntu hirsute/main s390x libpcre16-3 s390x 2:8.39-13 [79.5 kB] Get:121 http://ftpmaster.internal/ubuntu hirsute/main s390x libpcre32-3 s390x 2:8.39-13 [73.8 kB] Get:122 http://ftpmaster.internal/ubuntu hirsute/main s390x libpcrecpp0v5 s390x 2:8.39-13 [14.6 kB] Get:123 http://ftpmaster.internal/ubuntu hirsute/main s390x libpcre3-dev s390x 2:8.39-13 [376 kB] Get:124 http://ftpmaster.internal/ubuntu hirsute/main s390x zlib1g-dev s390x 1:1.2.11.dfsg-2ubuntu4 [166 kB] Get:125 http://ftpmaster.internal/ubuntu hirsute/main s390x libpng-dev s390x 1.6.37-3 [188 kB] Get:126 http://ftpmaster.internal/ubuntu hirsute/main s390x libbz2-dev s390x 1.0.8-4ubuntu2 [30.6 kB] Get:127 http://ftpmaster.internal/ubuntu hirsute/main s390x liblzma-dev s390x 5.2.4-1ubuntu1 [146 kB] Get:128 http://ftpmaster.internal/ubuntu hirsute/main s390x icu-devtools s390x 67.1-4 [202 kB] Get:129 http://ftpmaster.internal/ubuntu hirsute/main s390x libicu-dev s390x 67.1-4 [9705 kB] Get:130 http://ftpmaster.internal/ubuntu hirsute/main s390x pkg-config s390x 0.29.2-1ubuntu1 [45.0 kB] Get:131 http://ftpmaster.internal/ubuntu hirsute/universe s390x r-base-dev all 4.0.2-1build1 [4524 B] Get:132 http://ftpmaster.internal/ubuntu hirsute/main s390x libfile-which-perl all 1.23-1 [13.8 kB] Get:133 http://ftpmaster.internal/ubuntu hirsute/universe s390x libswitch-perl all 2.17-2 [18.8 kB] Get:134 http://ftpmaster.internal/ubuntu hirsute/universe s390x dh-r all 20200710ubuntu1 [35.5 kB] Get:135 http://ftpmaster.internal/ubuntu hirsute-proposed/universe s390x r-bioc-biocgenerics all 0.36.0-1 [646 kB] Get:136 http://ftpmaster.internal/ubuntu hirsute-proposed/universe s390x r-bioc-s4vectors s390x 0.28.0-1 [2027 kB] Get:137 http://ftpmaster.internal/ubuntu hirsute-proposed/universe s390x r-bioc-iranges s390x 2.24.0-1 [2194 kB] Get:138 http://ftpmaster.internal/ubuntu hirsute/universe s390x r-cran-bitops s390x 1.0-6-5 [22.8 kB] Get:139 http://ftpmaster.internal/ubuntu hirsute/universe s390x r-cran-rcurl s390x 1.98-1.2-1build1 [787 kB] Get:140 http://ftpmaster.internal/ubuntu hirsute/universe s390x r-bioc-genomeinfodbdata all 1.2.4-1 [10.7 MB] Get:141 http://ftpmaster.internal/ubuntu hirsute-proposed/universe s390x r-bioc-genomeinfodb all 1.26.0-1 [3907 kB] Get:142 http://ftpmaster.internal/ubuntu hirsute-proposed/universe s390x r-bioc-zlibbioc all 1.36.0+dfsg-1 [8908 B] Get:143 http://ftpmaster.internal/ubuntu hirsute-proposed/universe s390x r-bioc-xvector s390x 0.30.0-1 [618 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 148 MB in 9s (16.8 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 12765 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.36-3ubuntu1_s390x.deb ... Unpacking bsdextrautils (2.36-3ubuntu1) ... Selecting previously unselected package libuchardet0:s390x. Preparing to unpack .../001-libuchardet0_0.0.7-1_s390x.deb ... Unpacking libuchardet0:s390x (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-5_s390x.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:s390x. Preparing to unpack .../003-libpipeline1_1.5.3-1_s390x.deb ... Unpacking libpipeline1:s390x (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.3-2_s390x.deb ... Unpacking man-db (2.9.3-2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.38-5_s390x.deb ... Unpacking libmagic-mgc (1:5.38-5) ... 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Unpacking gettext (0.19.8.1-10build1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../043-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../044-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../045-debhelper_13.2.1ubuntu1_all.deb ... Unpacking debhelper (13.2.1ubuntu1) ... Selecting previously unselected package zip. Preparing to unpack .../046-zip_3.0-11build1_s390x.deb ... Unpacking zip (3.0-11build1) ... Selecting previously unselected package unzip. Preparing to unpack .../047-unzip_6.0-25ubuntu1_s390x.deb ... Unpacking unzip (6.0-25ubuntu1) ... Selecting previously unselected package libpaper1:s390x. Preparing to unpack .../048-libpaper1_1.1.28_s390x.deb ... Unpacking libpaper1:s390x (1.1.28) ... 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No schema files found: doing nothing. Setting up unzip (6.0-25ubuntu1) ... Setting up libdebhelper-perl (13.2.1ubuntu1) ... Setting up libbrotli1:s390x (1.0.9-2build1) ... Setting up x11-common (1:7.7+19ubuntu15) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libnghttp2-14:s390x (1.41.0-3) ... Setting up libmagic1:s390x (1:5.38-5) ... Setting up gettext-base (0.19.8.1-10build1) ... Setting up file (1:5.38-5) ... Setting up libreadline-dev:s390x (8.0-4) ... Setting up libjbig0:s390x (2.1-3.1build1) ... Setting up libpcre2-16-0:s390x (10.34-7) ... Setting up libsasl2-modules-db:s390x (2.1.27+dfsg-2ubuntu1) ... Setting up zip (3.0-11build1) ... Setting up autotools-dev (20180224.1) ... Setting up libpcre2-32-0:s390x (10.34-7) ... Setting up libblas3:s390x (3.9.0-3ubuntu1) ... update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode Setting up libswitch-perl (2.17-2) ... Setting up libfreetype6:s390x (2.10.2+dfsg-3ubuntu1) ... Setting up libx11-data (2:1.6.12-1) ... Setting up librtmp1:s390x (2.4+20151223.gitfa8646d.1-2build2) ... Setting up libsigsegv2:s390x (2.12-2build1) ... Setting up libfribidi0:s390x (1.0.8-2) ... Setting up libpcre32-3:s390x (2:8.39-13) ... Setting up libtcl8.6:s390x (8.6.10+dfsg-1) ... Setting up autopoint (0.19.8.1-10build1) ... Setting up libwebp6:s390x (0.6.1-2) ... Setting up icu-devtools (67.1-4) ... Setting up pkg-config (0.29.2-1ubuntu1) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up ucf (3.0043) ... Setting up libpcre2-posix2:s390x (10.34-7) ... Setting up libjpeg-turbo8:s390x (2.0.3-0ubuntu2) ... Setting up libsasl2-2:s390x (2.1.27+dfsg-2ubuntu1) ... Setting up libssh-4:s390x (0.9.4-1ubuntu3) ... Setting up libgfortran5:s390x (10.2.0-16ubuntu1) ... Setting up libroken18-heimdal:s390x (7.7.0+dfsg-2) ... Setting up liblzma-dev:s390x (5.2.4-1ubuntu1) ... Setting up zlib1g-dev:s390x (1:1.2.11.dfsg-2ubuntu4) ... Setting up libuchardet0:s390x (0.0.7-1) ... Setting up libncurses5-dev:s390x (6.2+20200918-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libharfbuzz0b:s390x (2.6.7-1ubuntu1) ... Setting up libthai-data (0.1.28-3) ... Setting up libgfortran-10-dev:s390x (10.2.0-16ubuntu1) ... Setting up libbsd0:s390x (0.10.0-1) ... Setting up libelf1:s390x (0.181-1) ... Setting up libicu-dev:s390x (67.1-4) ... Setting up libxml2:s390x (2.9.10+dfsg-6.2) ... Setting up xdg-utils (1.1.3-2ubuntu1) ... Setting up libblas-dev:s390x (3.9.0-3ubuntu1) ... update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode Setting up dctrl-tools (2.24-3) ... Setting up libheimbase1-heimdal:s390x (7.7.0+dfsg-2) ... Setting up libbz2-dev:s390x (1.0.8-4ubuntu2) ... Setting up libjpeg8:s390x (8c-2ubuntu8) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up libpaper1:s390x (1.1.28) ... Creating config file /etc/papersize with new version Setting up libice6:s390x (2:1.0.10-1) ... Setting up libjpeg-turbo8-dev:s390x (2.0.3-0ubuntu2) ... Setting up libxdmcp6:s390x (1:1.1.3-0ubuntu1) ... Setting up liblapack3:s390x (3.9.0-3ubuntu1) ... update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode Setting up libxcb1:s390x (1.14-2) ... Setting up libpcre2-dev:s390x (10.34-7) ... Setting up libtool (2.4.6-14) ... Setting up libxcb-render0:s390x (1.14-2) ... Setting up libpcre3-dev:s390x (2:8.39-13) ... Setting up fontconfig-config (2.13.1-4.2ubuntu2) ... Setting up libasn1-8-heimdal:s390x (7.7.0+dfsg-2) ... Setting up libpng-dev:s390x (1.6.37-3) ... Setting up m4 (1.4.18-4) ... Setting up libxcb-shm0:s390x (1.14-2) ... Setting up libpaper-utils (1.1.28) ... Setting up libhcrypto4-heimdal:s390x (7.7.0+dfsg-2) ... Setting up libthai0:s390x (0.1.28-3) ... Setting up libwind0-heimdal:s390x (7.7.0+dfsg-2) ... Setting up liblapack-dev:s390x (3.9.0-3ubuntu1) ... update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode Setting up gfortran-10 (10.2.0-16ubuntu1) ... Setting up libcroco3:s390x (0.6.13-1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up libx11-6:s390x (2:1.6.12-1) ... Setting up libtiff5:s390x (4.1.0+git191117-2build1) ... Setting up libfontconfig1:s390x (2.13.1-4.2ubuntu2) ... Setting up libjpeg8-dev:s390x (8c-2ubuntu8) ... Setting up libsm6:s390x (2:1.2.3-1) ... Setting up libxmuu1:s390x (2:1.1.3-0ubuntu1) ... Setting up automake (1:1.16.2-4ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up fontconfig (2.13.1-4.2ubuntu2) ... Regenerating fonts cache... done. Setting up gettext (0.19.8.1-10build1) ... Setting up libxrender1:s390x (1:0.9.10-1) ... Setting up libhx509-5-heimdal:s390x (7.7.0+dfsg-2) ... Setting up libpango-1.0-0:s390x (1.46.2-2) ... Setting up libjpeg-dev:s390x (8c-2ubuntu8) ... Setting up libxext6:s390x (2:1.3.4-0ubuntu1) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up gfortran (4:10.2.0-1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:s390x (1.16.0-4ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxt6:s390x (1:1.2.0-1) ... Setting up xauth (1:1.1-0ubuntu1) ... Setting up libxss1:s390x (1:1.2.3-1) ... Setting up libpangoft2-1.0-0:s390x (1.46.2-2) ... Setting up libpangocairo-1.0-0:s390x (1.46.2-2) ... Setting up libkrb5-26-heimdal:s390x (7.7.0+dfsg-2) ... Setting up libxft2:s390x (2.3.3-0ubuntu1) ... Setting up po-debconf (1.0.21) ... Setting up libtk8.6:s390x (8.6.10-1) ... Setting up libheimntlm0-heimdal:s390x (7.7.0+dfsg-2) ... Setting up libgssapi3-heimdal:s390x (7.7.0+dfsg-2) ... Setting up libldap-2.4-2:s390x (2.4.53+dfsg-1ubuntu1) ... Setting up libcurl4:s390x (7.68.0-1ubuntu4) ... Setting up r-base-core (4.0.2-1build1) ... Creating config file /etc/R/Renviron with new version Setting up r-bioc-genomeinfodbdata (1.2.4-1) ... Setting up r-bioc-biocgenerics (0.36.0-1) ... Setting up r-base-dev (4.0.2-1build1) ... Setting up r-cran-bitops (1.0-6-5) ... Setting up r-bioc-zlibbioc (1.36.0+dfsg-1) ... Setting up r-bioc-s4vectors (0.28.0-1) ... Setting up r-bioc-iranges (2.24.0-1) ... Setting up r-cran-rcurl (1.98-1.2-1build1) ... Setting up r-bioc-genomeinfodb (1.26.0-1) ... Setting up r-bioc-xvector (0.30.0-1) ... Setting up dh-autoreconf (19) ... Setting up debhelper (13.2.1ubuntu1) ... Setting up dh-r (20200710ubuntu1) ... Setting up sbuild-build-depends-r-bioc-genomicranges-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.32-0ubuntu4) ... Processing triggers for systemd (246.6-2ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-122-generic s390x (s390x) Toolchain package versions: binutils_2.35.1-2ubuntu1 dpkg-dev_1.20.5ubuntu2 g++-10_10.2.0-16ubuntu1 gcc-10_10.2.0-16ubuntu1 libc6-dev_2.32-0ubuntu4 libstdc++-10-dev_10.2.0-16ubuntu1 libstdc++6_10.2.0-16ubuntu1 linux-libc-dev_5.8.0-26.27 Package versions: adduser_3.118ubuntu2 advancecomp_2.1-2.1build1 apt_2.1.11 autoconf_2.69-11.1 automake_1:1.16.2-4ubuntu1 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu16 base-passwd_3.5.48 bash_5.0-6ubuntu2 binutils_2.35.1-2ubuntu1 binutils-common_2.35.1-2ubuntu1 binutils-s390x-linux-gnu_2.35.1-2ubuntu1 bsdextrautils_2.36-3ubuntu1 bsdutils_1:2.36-3ubuntu1 build-essential_12.8ubuntu3 bzip2_1.0.8-4ubuntu2 ca-certificates_20200601 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libnss-nisplus_1.3-0ubuntu4 libp11-kit0_0.23.21-2build1 libpam-modules_1.3.1-5ubuntu6 libpam-modules-bin_1.3.1-5ubuntu6 libpam-runtime_1.3.1-5ubuntu6 libpam0g_1.3.1-5ubuntu6 libpango-1.0-0_1.46.2-2 libpangocairo-1.0-0_1.46.2-2 libpangoft2-1.0-0_1.46.2-2 libpaper-utils_1.1.28 libpaper1_1.1.28 libpcre16-3_2:8.39-13 libpcre2-16-0_10.34-7 libpcre2-32-0_10.34-7 libpcre2-8-0_10.34-7 libpcre2-dev_10.34-7 libpcre2-posix2_10.34-7 libpcre3_2:8.39-13 libpcre3-dev_2:8.39-13 libpcre32-3_2:8.39-13 libpcrecpp0v5_2:8.39-13 libperl5.30_5.30.3-4 libpipeline1_1.5.3-1 libpixman-1-0_0.38.4-0ubuntu1 libpng-dev_1.6.37-3 libpng16-16_1.6.37-3 libprocps8_2:3.3.16-5ubuntu2 libpsl5_0.21.0-1.1ubuntu1 libreadline-dev_8.0-4 libreadline8_8.0-4 libroken18-heimdal_7.7.0+dfsg-2 librtmp1_2.4+20151223.gitfa8646d.1-2build2 libsasl2-2_2.1.27+dfsg-2ubuntu1 libsasl2-modules-db_2.1.27+dfsg-2ubuntu1 libseccomp2_2.4.3-1ubuntu5 libselinux1_3.1-2build1 libsemanage-common_3.1-1build1 libsemanage1_3.1-1build1 libsepol1_3.1-1 libsigsegv2_2.12-2build1 libsm6_2:1.2.3-1 libsmartcols1_2.36-3ubuntu1 libsqlite3-0_3.33.0-1 libss2_1.45.6-1ubuntu1 libssh-4_0.9.4-1ubuntu3 libssl1.1_1.1.1f-1ubuntu4 libstdc++-10-dev_10.2.0-16ubuntu1 libstdc++6_10.2.0-16ubuntu1 libsub-override-perl_0.09-2 libswitch-perl_2.17-2 libsystemd0_246.6-2ubuntu1 libtasn1-6_4.16.0-2 libtcl8.6_8.6.10+dfsg-1 libthai-data_0.1.28-3 libthai0_0.1.28-3 libtiff5_4.1.0+git191117-2build1 libtinfo6_6.2+20200918-1 libtirpc-common_1.2.6-3 libtirpc-dev_1.2.6-3 libtirpc3_1.2.6-3 libtk8.6_8.6.10-1 libtool_2.4.6-14 libubsan1_10.2.0-16ubuntu1 libuchardet0_0.0.7-1 libudev1_246.6-2ubuntu1 libunistring2_0.9.10-4 libuuid1_2.36-3ubuntu1 libwebp6_0.6.1-2 libwind0-heimdal_7.7.0+dfsg-2 libx11-6_2:1.6.12-1 libx11-data_2:1.6.12-1 libxau6_1:1.0.9-0ubuntu1 libxcb-render0_1.14-2 libxcb-shm0_1.14-2 libxcb1_1.14-2 libxdmcp6_1:1.1.3-0ubuntu1 libxext6_2:1.3.4-0ubuntu1 libxft2_2.3.3-0ubuntu1 libxml2_2.9.10+dfsg-6.2 libxmuu1_2:1.1.3-0ubuntu1 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.2.0-1 libzstd1_1.4.5+dfsg-4 linux-libc-dev_5.8.0-26.27 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu6 logsave_1.45.6-1ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.3-4ubuntu1 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36-3ubuntu1 ncurses-base_6.2+20200918-1 ncurses-bin_6.2+20200918-1 openssl_1.1.1f-1ubuntu4 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu6 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.30_5.30.3-4 pinentry-curses_1.1.0-4build1 pkg-config_0.29.2-1ubuntu1 pkgbinarymangler_146 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-5ubuntu2 r-base-core_4.0.2-1build1 r-base-dev_4.0.2-1build1 r-bioc-biocgenerics_0.36.0-1 r-bioc-genomeinfodb_1.26.0-1 r-bioc-genomeinfodbdata_1.2.4-1 r-bioc-iranges_2.24.0-1 r-bioc-s4vectors_0.28.0-1 r-bioc-xvector_0.30.0-1 r-bioc-zlibbioc_1.36.0+dfsg-1 r-cran-bitops_1.0-6-5 r-cran-rcurl_1.98-1.2-1build1 readline-common_8.0-4 rpcsvc-proto_1.4.2-0ubuntu4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-genomicranges-dummy_0.invalid.0 sed_4.7-1ubuntu1 sensible-utils_0.0.13 systemd_246.6-2ubuntu1 systemd-sysv_246.6-2ubuntu1 systemd-timesyncd_246.6-2ubuntu1 sysvinit-utils_2.96-5ubuntu1 tar_1.30+dfsg-7 tzdata_2020d-1ubuntu1 ubuntu-keyring_2020.06.17.1 ucf_3.0043 unzip_6.0-25ubuntu1 util-linux_2.36-3ubuntu1 x11-common_1:7.7+19ubuntu15 xauth_1:1.1-0ubuntu1 xdg-utils_1.1.3-2ubuntu1 xz-utils_5.2.4-1ubuntu1 zip_3.0-11build1 zlib1g_1:1.2.11.dfsg-2ubuntu4 zlib1g-dev_1:1.2.11.dfsg-2ubuntu4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon Nov 2 12:57:03 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-bioc-genomicranges_1.42.0+dfsg-1.dsc dpkg-source: info: extracting r-bioc-genomicranges in /<>/r-bioc-genomicranges-1.42.0+dfsg dpkg-source: info: unpacking r-bioc-genomicranges_1.42.0+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-genomicranges_1.42.0+dfsg-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-20240103 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-20240103 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-20240103 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package r-bioc-genomicranges dpkg-buildpackage: info: source version 1.42.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary-arch dh binary-arch --buildsystem R dh_update_autotools_config -a -O--buildsystem=R dh_autoreconf -a -O--buildsystem=R dh_auto_configure -a -O--buildsystem=R dh_auto_build -a -O--buildsystem=R dh_auto_test -a -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=R dh_prep -a -O--buildsystem=R dh_auto_install -a -O--buildsystem=R I: R packages needed for DEP8: runit, digest, annotate, summarizedexperiment I: R Package: GenomicRanges Version: 1.42.0 I: Building using R version 4.0.2-1build1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Mon, 02 Nov 2020 13:51:25 +0100 mkdir -p /<>/r-bioc-genomicranges-1.42.0\+dfsg/debian/r-bioc-genomicranges/usr/lib/R/site-library R CMD INSTALL -l /<>/r-bioc-genomicranges-1.42.0\+dfsg/debian/r-bioc-genomicranges/usr/lib/R/site-library --clean . "--built-timestamp='Mon, 02 Nov 2020 13:51:25 +0100'" * installing *source* package ‘GenomicRanges’ ... ** using staged installation ** libs make[1]: Entering directory '/<>/r-bioc-genomicranges-1.42.0+dfsg/src' gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fPIC -g -O2 -fdebug-prefix-map=/build/r-base-dA_scK/r-base-4.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c IRanges_stubs.c -o IRanges_stubs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fPIC -g -O2 -fdebug-prefix-map=/build/r-base-dA_scK/r-base-4.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_GenomicRanges.c -o R_init_GenomicRanges.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fPIC -g -O2 -fdebug-prefix-map=/build/r-base-dA_scK/r-base-4.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c S4Vectors_stubs.c -o S4Vectors_stubs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fPIC -g -O2 -fdebug-prefix-map=/build/r-base-dA_scK/r-base-4.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c transcript_utils.c -o transcript_utils.o gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o GenomicRanges.so IRanges_stubs.o R_init_GenomicRanges.o S4Vectors_stubs.o transcript_utils.o -L/usr/lib/R/lib -lR make[1]: Leaving directory '/<>/r-bioc-genomicranges-1.42.0+dfsg/src' make[1]: Entering directory '/<>/r-bioc-genomicranges-1.42.0+dfsg/src' make[1]: Leaving directory '/<>/r-bioc-genomicranges-1.42.0+dfsg/src' installing to /<>/r-bioc-genomicranges-1.42.0+dfsg/debian/r-bioc-genomicranges/usr/lib/R/site-library/00LOCK-r-bioc-genomicranges-1.42.0+dfsg/00new/GenomicRanges/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GenomicRanges) W: Ignoring specified R dependency: R (>= 2.10) I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.25.3) I: Using r-bioc-s4vectors for Depends:S4Vectors (>= 0.27.12) I: Using r-bioc-iranges for Depends:IRanges (>= 2.23.9) I: Using r-bioc-genomeinfodb for Depends:GenomeInfoDb (>= 1.15.2) I: Using r-cran-runit for Recommends:runit I: Using r-cran-digest for Recommends:digest I: Using r-bioc-annotate for Recommends:annotate I: Using r-bioc-summarizedexperiment for Recommends:summarizedexperiment I: Using r-cran-matrix for Suggests:Matrix I: Using r-bioc-biobase for Suggests:Biobase I: Using r-bioc-annotationdbi for Suggests:AnnotationDbi I: Using r-bioc-biostrings for Suggests:Biostrings (>= 2.25.3) I: Using r-bioc-rsamtools for Suggests:Rsamtools (>= 1.13.53) I: Using r-bioc-genomicalignments for Suggests:GenomicAlignments I: Using r-bioc-rtracklayer for Suggests:rtracklayer I: Using r-bioc-bsgenome for Suggests:BSgenome I: Using r-bioc-genomicfeatures for Suggests:GenomicFeatures I: Using r-bioc-gviz for Suggests:Gviz I: Using r-bioc-variantannotation for Suggests:VariantAnnotation I: Using r-bioc-annotationhub for Suggests:AnnotationHub I: Using r-bioc-deseq2 for Suggests:DESeq2 I: Using r-bioc-dexseq for Suggests:DEXSeq I: Using r-bioc-edger for Suggests:edgeR W: Cannot find a debian package for Suggests:KEGGgraph W: Cannot find a debian package for Suggests:RNAseqData.HNRNPC.bam.chr14 W: Cannot find a debian package for Suggests:pasillaBamSubset W: Cannot find a debian package for Suggests:KEGG.db W: Cannot find a debian package for Suggests:hgu95av2.db W: Cannot find a debian package for Suggests:hgu95av2probe W: Cannot find a debian package for Suggests:BSgenome.Scerevisiae.UCSC.sacCer2 W: Cannot find a debian package for Suggests:BSgenome.Hsapiens.UCSC.hg19 W: Cannot find a debian package for Suggests:BSgenome.Mmusculus.UCSC.mm10 W: Cannot find a debian package for Suggests:TxDb.Athaliana.BioMart.plantsmart22 W: Cannot find a debian package for Suggests:TxDb.Dmelanogaster.UCSC.dm3.ensGene W: Cannot find a debian package for Suggests:TxDb.Hsapiens.UCSC.hg19.knownGene W: Cannot find a debian package for Suggests:TxDb.Mmusculus.UCSC.mm10.knownGene I: Using r-cran-knitr for Suggests:knitr I: Using r-bioc-biocstyle for Suggests:BiocStyle I: Using r-bioc-xvector for Imports:XVector (>= 0.29.2) I: Using r-bioc-s4vectors for LinkingTo:S4Vectors I: Using r-bioc-iranges for LinkingTo:IRanges I: BioConductor API version: r-api-bioc-3.12 I: Use r-bioc-genomicranges as Debian binary package for variables substitution dh_installdocs -a -O--buildsystem=R dh_installchangelogs -a -O--buildsystem=R dh_installsystemduser -a -O--buildsystem=R dh_perl -a -O--buildsystem=R dh_link -a -O--buildsystem=R dh_strip_nondeterminism -a -O--buildsystem=R dh_compress -a -O--buildsystem=R dh_fixperms -a -O--buildsystem=R dh_missing -a -O--buildsystem=R dh_dwz -a -a -O--buildsystem=R dh_strip -a -a -O--buildsystem=R dh_makeshlibs -a -a -O--buildsystem=R dh_shlibdeps -a -a -O--buildsystem=R dh_installdeb -a -O--buildsystem=R dh_gencontrol -a -O--buildsystem=R dh_md5sums -a -O--buildsystem=R dh_builddeb -a -O--buildsystem=R INFO: pkgstriptranslations version 146 INFO: pkgstriptranslations version 146 pkgstriptranslations: processing r-bioc-genomicranges (in debian/r-bioc-genomicranges); do_strip: , oemstrip: pkgstriptranslations: processing r-bioc-genomicranges-dbgsym (in debian/.debhelper/r-bioc-genomicranges/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-bioc-genomicranges/DEBIAN/control, package r-bioc-genomicranges, directory debian/r-bioc-genomicranges pkgstripfiles: processing control file: debian/.debhelper/r-bioc-genomicranges/dbgsym-root/DEBIAN/control, package r-bioc-genomicranges-dbgsym, directory debian/.debhelper/r-bioc-genomicranges/dbgsym-root dpkg-deb: building package 'r-bioc-genomicranges-dbgsym' in 'debian/.debhelper/scratch-space/build-r-bioc-genomicranges/r-bioc-genomicranges-dbgsym_1.42.0+dfsg-1_s390x.deb'. pkgstripfiles: Truncating usr/share/doc/r-bioc-genomicranges/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-bioc-genomicranges ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-bioc-genomicranges' in '../r-bioc-genomicranges_1.42.0+dfsg-1_s390x.deb'. Renaming r-bioc-genomicranges-dbgsym_1.42.0+dfsg-1_s390x.deb to r-bioc-genomicranges-dbgsym_1.42.0+dfsg-1_s390x.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../r-bioc-genomicranges_1.42.0+dfsg-1_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-11-05T11:20:18Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-bioc-genomicranges_1.42.0+dfsg-1_s390x.changes: ------------------------------------------------- Format: 1.8 Date: Mon, 02 Nov 2020 13:51:25 +0100 Source: r-bioc-genomicranges Binary: r-bioc-genomicranges Architecture: s390x Version: 1.42.0+dfsg-1 Distribution: hirsute-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: r-bioc-genomicranges - BioConductor representation and manipulation of genomic intervals Changes: r-bioc-genomicranges (1.42.0+dfsg-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) Checksums-Sha1: 968dac2e46730daee44f3c16b0f658c1341bc9ed 38308 r-bioc-genomicranges-dbgsym_1.42.0+dfsg-1_s390x.ddeb 3ad9cb7931da7bdcc60ff69f66c2b65ded9a8963 9482 r-bioc-genomicranges_1.42.0+dfsg-1_s390x.buildinfo df375a132de7e17e21c2a974dcc07bb613813f6e 1859620 r-bioc-genomicranges_1.42.0+dfsg-1_s390x.deb Checksums-Sha256: 5a81cfa9a86c86af0c20233a47697fb6d7354991eceea29e11bd0e3e68e48c31 38308 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r-bioc-genomicranges-dbgsym_1.42.0+dfsg-1_s390x.ddeb 8b946a1401c4a3b336f02d45a73921c9 1859620 r-bioc-genomicranges_1.42.0+dfsg-1_s390x.deb Checksums-Sha1: 968dac2e46730daee44f3c16b0f658c1341bc9ed 38308 r-bioc-genomicranges-dbgsym_1.42.0+dfsg-1_s390x.ddeb df375a132de7e17e21c2a974dcc07bb613813f6e 1859620 r-bioc-genomicranges_1.42.0+dfsg-1_s390x.deb Checksums-Sha256: 5a81cfa9a86c86af0c20233a47697fb6d7354991eceea29e11bd0e3e68e48c31 38308 r-bioc-genomicranges-dbgsym_1.42.0+dfsg-1_s390x.ddeb 0c8125218487d07c2afa2fbc7672b41cc95b172809a047a58252c6e52248fcbb 1859620 r-bioc-genomicranges_1.42.0+dfsg-1_s390x.deb Build-Origin: Ubuntu Build-Architecture: s390x Build-Date: Thu, 05 Nov 2020 11:20:18 +0000 Build-Path: /<>/r-bioc-genomicranges-1.42.0+dfsg Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.2-4ubuntu1), autopoint (= 0.19.8.1-10build1), autotools-dev (= 20180224.1), base-files (= 11ubuntu16), base-passwd (= 3.5.48), bash (= 5.0-6ubuntu2), binutils (= 2.35.1-2ubuntu1), binutils-common (= 2.35.1-2ubuntu1), binutils-s390x-linux-gnu (= 2.35.1-2ubuntu1), bsdextrautils (= 2.36-3ubuntu1), bsdutils (= 1:2.36-3ubuntu1), build-essential (= 12.8ubuntu3), bzip2 (= 1.0.8-4ubuntu2), ca-certificates (= 20200601), coreutils (= 8.32-3ubuntu1), cpp (= 4:10.2.0-1ubuntu1), cpp-10 (= 10.2.0-16ubuntu1), dash (= 0.5.10.2-7), dctrl-tools (= 2.24-3), debconf (= 1.5.74), debhelper (= 13.2.1ubuntu1), debianutils (= 4.11.2), dh-autoreconf (= 19), dh-r (= 20200710ubuntu1), dh-strip-nondeterminism (= 1.9.0-1), diffutils (= 1:3.7-3ubuntu1), dpkg (= 1.20.5ubuntu2), dpkg-dev (= 1.20.5ubuntu2), dwz (= 0.13-5), file (= 1:5.38-5), findutils (= 4.7.0-1ubuntu2), fontconfig (= 2.13.1-4.2ubuntu2), fontconfig-config (= 2.13.1-4.2ubuntu2), fonts-dejavu-core (= 2.37-2), g++ (= 4:10.2.0-1ubuntu1), g++-10 (= 10.2.0-16ubuntu1), gcc (= 4:10.2.0-1ubuntu1), gcc-10 (= 10.2.0-16ubuntu1), gcc-10-base (= 10.2.0-16ubuntu1), gettext (= 0.19.8.1-10build1), gettext-base (= 0.19.8.1-10build1), gfortran (= 4:10.2.0-1ubuntu1), gfortran-10 (= 10.2.0-16ubuntu1), grep (= 3.4-1), groff-base (= 1.22.4-5), gzip (= 1.10-2ubuntu1), hostname (= 3.23), icu-devtools (= 67.1-4), init-system-helpers (= 1.58), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-8), libarchive-zip-perl (= 1.68-1), libasan6 (= 10.2.0-16ubuntu1), libasn1-8-heimdal (= 7.7.0+dfsg-2), libatomic1 (= 10.2.0-16ubuntu1), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-3ubuntu2), libaudit1 (= 1:2.8.5-3ubuntu2), libbinutils (= 2.35.1-2ubuntu1), libblas-dev (= 3.9.0-3ubuntu1), libblas3 (= 3.9.0-3ubuntu1), libblkid1 (= 2.36-3ubuntu1), libbrotli1 (= 1.0.9-2build1), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-4ubuntu2), libbz2-dev (= 1.0.8-4ubuntu2), libc-bin (= 2.32-0ubuntu4), libc-dev-bin (= 2.32-0ubuntu4), libc6 (= 2.32-0ubuntu4), libc6-dev (= 2.32-0ubuntu4), libcairo2 (= 1.16.0-4ubuntu1), libcap-ng0 (= 0.7.9-2.2), libcc1-0 (= 10.2.0-16ubuntu1), libcom-err2 (= 1.45.6-1ubuntu1), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.17-1ubuntu1), libcrypt1 (= 1:4.4.17-1ubuntu1), libctf-nobfd0 (= 2.35.1-2ubuntu1), libctf0 (= 2.35.1-2ubuntu1), libcurl4 (= 7.68.0-1ubuntu4), libdatrie1 (= 0.2.12-3), libdb5.3 (= 5.3.28+dfsg1-0.6ubuntu3), libdebconfclient0 (= 0.254ubuntu1), libdebhelper-perl (= 13.2.1ubuntu1), libdpkg-perl (= 1.20.5ubuntu2), libelf1 (= 0.181-1), libexpat1 (= 2.2.10-1), libffi8ubuntu1 (= 3.4~20200819gead65ca871-0ubuntu3), libfile-stripnondeterminism-perl (= 1.9.0-1), libfile-which-perl (= 1.23-1), libfontconfig1 (= 2.13.1-4.2ubuntu2), libfreetype6 (= 2.10.2+dfsg-3ubuntu1), libfribidi0 (= 1.0.8-2), libgcc-10-dev (= 10.2.0-16ubuntu1), libgcc-s1 (= 10.2.0-16ubuntu1), libgcrypt20 (= 1.8.5-5ubuntu2), libgdbm-compat4 (= 1.18.1-5.1), libgdbm6 (= 1.18.1-5.1), libgfortran-10-dev (= 10.2.0-16ubuntu1), libgfortran5 (= 10.2.0-16ubuntu1), libglib2.0-0 (= 2.66.2-1), libgmp10 (= 2:6.2.0+dfsg-6ubuntu1), libgnutls30 (= 3.6.15-4ubuntu2), libgomp1 (= 10.2.0-16ubuntu1), libgpg-error0 (= 1.38-2), libgraphite2-3 (= 1.3.14-1), libgssapi-krb5-2 (= 1.17-10), libgssapi3-heimdal (= 7.7.0+dfsg-2), libharfbuzz0b (= 2.6.7-1ubuntu1), libhcrypto4-heimdal (= 7.7.0+dfsg-2), libheimbase1-heimdal (= 7.7.0+dfsg-2), libheimntlm0-heimdal (= 7.7.0+dfsg-2), libhogweed6 (= 3.6-2), libhx509-5-heimdal (= 7.7.0+dfsg-2), libice6 (= 2:1.0.10-1), libicu-dev (= 67.1-4), libicu67 (= 67.1-4), libidn2-0 (= 2.3.0-2), libisl22 (= 0.22.1-1), libitm1 (= 10.2.0-16ubuntu1), libjbig0 (= 2.1-3.1build1), libjpeg-dev (= 8c-2ubuntu8), libjpeg-turbo8 (= 2.0.3-0ubuntu2), libjpeg-turbo8-dev (= 2.0.3-0ubuntu2), libjpeg8 (= 8c-2ubuntu8), libjpeg8-dev (= 8c-2ubuntu8), libk5crypto3 (= 1.17-10), libkeyutils1 (= 1.6.1-2ubuntu1), libkrb5-26-heimdal (= 7.7.0+dfsg-2), libkrb5-3 (= 1.17-10), libkrb5support0 (= 1.17-10), liblapack-dev (= 3.9.0-3ubuntu1), liblapack3 (= 3.9.0-3ubuntu1), libldap-2.4-2 (= 2.4.53+dfsg-1ubuntu1), liblz4-1 (= 1.9.2-2), liblzma-dev (= 5.2.4-1ubuntu1), liblzma5 (= 5.2.4-1ubuntu1), libmagic-mgc (= 1:5.38-5), libmagic1 (= 1:5.38-5), libmount1 (= 2.36-3ubuntu1), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libncurses-dev (= 6.2+20200918-1), libncurses5-dev (= 6.2+20200918-1), libncurses6 (= 6.2+20200918-1), libncursesw6 (= 6.2+20200918-1), libnettle8 (= 3.6-2), libnghttp2-14 (= 1.41.0-3), libnsl-dev (= 1.3.0-0ubuntu3), libnsl2 (= 1.3.0-0ubuntu3), libp11-kit0 (= 0.23.21-2build1), libpam-modules (= 1.3.1-5ubuntu6), libpam-modules-bin (= 1.3.1-5ubuntu6), libpam-runtime (= 1.3.1-5ubuntu6), libpam0g (= 1.3.1-5ubuntu6), libpango-1.0-0 (= 1.46.2-2), libpangocairo-1.0-0 (= 1.46.2-2), libpangoft2-1.0-0 (= 1.46.2-2), libpaper-utils (= 1.1.28), libpaper1 (= 1.1.28), libpcre16-3 (= 2:8.39-13), libpcre2-16-0 (= 10.34-7), libpcre2-32-0 (= 10.34-7), libpcre2-8-0 (= 10.34-7), libpcre2-dev (= 10.34-7), libpcre2-posix2 (= 10.34-7), libpcre3 (= 2:8.39-13), libpcre3-dev (= 2:8.39-13), libpcre32-3 (= 2:8.39-13), libpcrecpp0v5 (= 2:8.39-13), libperl5.30 (= 5.30.3-4), libpipeline1 (= 1.5.3-1), libpixman-1-0 (= 0.38.4-0ubuntu1), libpng-dev (= 1.6.37-3), libpng16-16 (= 1.6.37-3), libpsl5 (= 0.21.0-1.1ubuntu1), libreadline-dev (= 8.0-4), libreadline8 (= 8.0-4), libroken18-heimdal (= 7.7.0+dfsg-2), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build2), libsasl2-2 (= 2.1.27+dfsg-2ubuntu1), libsasl2-modules-db (= 2.1.27+dfsg-2ubuntu1), libseccomp2 (= 2.4.3-1ubuntu5), libselinux1 (= 3.1-2build1), libsigsegv2 (= 2.12-2build1), libsm6 (= 2:1.2.3-1), libsmartcols1 (= 2.36-3ubuntu1), libsqlite3-0 (= 3.33.0-1), libssh-4 (= 0.9.4-1ubuntu3), libssl1.1 (= 1.1.1f-1ubuntu4), libstdc++-10-dev (= 10.2.0-16ubuntu1), libstdc++6 (= 10.2.0-16ubuntu1), libsub-override-perl (= 0.09-2), libswitch-perl (= 2.17-2), libsystemd0 (= 246.6-2ubuntu1), libtasn1-6 (= 4.16.0-2), libtcl8.6 (= 8.6.10+dfsg-1), libthai-data (= 0.1.28-3), libthai0 (= 0.1.28-3), libtiff5 (= 4.1.0+git191117-2build1), libtinfo6 (= 6.2+20200918-1), libtirpc-common (= 1.2.6-3), libtirpc-dev (= 1.2.6-3), libtirpc3 (= 1.2.6-3), libtk8.6 (= 8.6.10-1), libtool (= 2.4.6-14), libubsan1 (= 10.2.0-16ubuntu1), libuchardet0 (= 0.0.7-1), libudev1 (= 246.6-2ubuntu1), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36-3ubuntu1), libwebp6 (= 0.6.1-2), libwind0-heimdal (= 7.7.0+dfsg-2), libx11-6 (= 2:1.6.12-1), libx11-data (= 2:1.6.12-1), libxau6 (= 1:1.0.9-0ubuntu1), libxcb-render0 (= 1.14-2), libxcb-shm0 (= 1.14-2), libxcb1 (= 1.14-2), libxdmcp6 (= 1:1.1.3-0ubuntu1), libxext6 (= 2:1.3.4-0ubuntu1), libxft2 (= 2.3.3-0ubuntu1), libxml2 (= 2.9.10+dfsg-6.2), libxmuu1 (= 2:1.1.3-0ubuntu1), libxrender1 (= 1:0.9.10-1), libxss1 (= 1:1.2.3-1), libxt6 (= 1:1.2.0-1), libzstd1 (= 1.4.5+dfsg-4), linux-libc-dev (= 5.8.0-26.27), login (= 1:4.8.1-1ubuntu6), lsb-base (= 11.1.0ubuntu2), m4 (= 1.4.18-4), make (= 4.3-4ubuntu1), man-db (= 2.9.3-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2+20200918-1), ncurses-bin (= 6.2+20200918-1), openssl (= 1.1.1f-1ubuntu4), patch (= 2.7.6-6), perl (= 5.30.3-4), perl-base (= 5.30.3-4), perl-modules-5.30 (= 5.30.3-4), pkg-config (= 0.29.2-1ubuntu1), po-debconf (= 1.0.21), r-base-core (= 4.0.2-1build1), r-base-dev (= 4.0.2-1build1), r-bioc-biocgenerics (= 0.36.0-1), r-bioc-genomeinfodb (= 1.26.0-1), r-bioc-genomeinfodbdata (= 1.2.4-1), r-bioc-iranges (= 2.24.0-1), r-bioc-s4vectors (= 0.28.0-1), r-bioc-xvector (= 0.30.0-1), r-bioc-zlibbioc (= 1.36.0+dfsg-1), r-cran-bitops (= 1.0-6-5), r-cran-rcurl (= 1.98-1.2-1build1), readline-common (= 8.0-4), rpcsvc-proto (= 1.4.2-0ubuntu4), sed (= 4.7-1ubuntu1), sensible-utils (= 0.0.13), sysvinit-utils (= 2.96-5ubuntu1), tar (= 1.30+dfsg-7), tzdata (= 2020d-1ubuntu1), ucf (= 3.0043), unzip (= 6.0-25ubuntu1), util-linux (= 2.36-3ubuntu1), x11-common (= 1:7.7+19ubuntu15), xauth (= 1:1.1-0ubuntu1), xdg-utils (= 1.1.3-2ubuntu1), xz-utils (= 5.2.4-1ubuntu1), zip (= 3.0-11build1), zlib1g (= 1:1.2.11.dfsg-2ubuntu4), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu4) Environment: DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1604321485" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-bioc-genomicranges_1.42.0+dfsg-1_s390x.deb -------------------------------------------- new Debian package, version 2.0. size 1859620 bytes: control archive=2584 bytes. 1437 bytes, 18 lines control 5332 bytes, 56 lines md5sums Package: r-bioc-genomicranges Version: 1.42.0+dfsg-1 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian R Packages Maintainers Installed-Size: 2675 Depends: r-base-core (>= 4.0.2-1build1), r-api-4.0, r-api-bioc-3.12, r-bioc-biocgenerics (>= 0.25.3), r-bioc-s4vectors (>= 0.27.12), r-bioc-iranges (>= 2.23.9), r-bioc-genomeinfodb (>= 1.15.2), r-bioc-xvector (>= 0.29.2), libc6 (>= 2.4) Recommends: r-cran-runit, r-cran-digest, r-bioc-annotate, r-bioc-summarizedexperiment Suggests: r-cran-matrix, r-bioc-biobase, r-bioc-annotationdbi, r-bioc-biostrings (>= 2.25.3), r-bioc-rsamtools (>= 1.13.53), r-bioc-genomicalignments, r-bioc-rtracklayer, r-bioc-bsgenome, r-bioc-genomicfeatures, r-bioc-gviz, r-bioc-variantannotation, r-bioc-annotationhub, r-bioc-deseq2, r-bioc-dexseq, r-bioc-edger, r-cran-knitr, r-bioc-biocstyle Section: gnu-r Priority: optional Homepage: https://bioconductor.org/packages/GenomicRanges/ Description: BioConductor representation and manipulation of genomic intervals The ability to efficiently store genomic annotations and alignments is playing a central role when it comes to analyze high-throughput sequencing data (a.k.a. NGS data). 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+------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build Type: any Build-Space: n/a Build-Time: 21 Distribution: hirsute-proposed Host Architecture: s390x Install-Time: 30 Job: r-bioc-genomicranges_1.42.0+dfsg-1.dsc Machine Architecture: s390x Package: r-bioc-genomicranges Package-Time: 51 Source-Version: 1.42.0+dfsg-1 Space: n/a Status: successful Version: 1.42.0+dfsg-1 -------------------------------------------------------------------------------- Finished at 2020-11-05T11:20:18Z Build needed 00:00:51, no disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=hirsute --arch=s390x PACKAGEBUILD-20240103 Scanning for processes to kill in build PACKAGEBUILD-20240103