https://launchpad.net/ubuntu/+source/r-bioc-genomicranges/1.50.2+dfsg-1/+build/25411816 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-019 5.4.0-135-generic #152-Ubuntu SMP Wed Nov 23 20:19:17 UTC 2022 aarch64 Buildd toolchain package versions: launchpad-buildd_225~602~ubuntu20.04.1 python3-lpbuildd_225~602~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.6 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 20 Dec 06:22:18 ntpdate[1811]: adjust time server 10.211.37.1 offset -0.000074 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=lunar --arch=arm64 PACKAGEBUILD-25411816 --image-type chroot /home/buildd/filecache-default/0ff053c85babb2453d3b9b9b50ec5a50c26e70b3 Creating target for build PACKAGEBUILD-25411816 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=lunar --arch=arm64 PACKAGEBUILD-25411816 Starting target for build PACKAGEBUILD-25411816 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=lunar --arch=arm64 PACKAGEBUILD-25411816 'deb http://ftpmaster.internal/ubuntu lunar main universe' 'deb http://ftpmaster.internal/ubuntu lunar-security main universe' 'deb http://ftpmaster.internal/ubuntu lunar-updates main universe' 'deb http://ftpmaster.internal/ubuntu lunar-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-25411816 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=lunar --arch=arm64 PACKAGEBUILD-25411816 Updating target for build PACKAGEBUILD-25411816 Get:1 http://ftpmaster.internal/ubuntu lunar InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu lunar-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu lunar-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu lunar/main arm64 Packages [1370 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main Translation-en [510 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/universe arm64 Packages [14.6 MB] Get:8 http://ftpmaster.internal/ubuntu lunar/universe Translation-en [5865 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 Packages [219 kB] Get:10 http://ftpmaster.internal/ubuntu lunar-proposed/main Translation-en [87.7 kB] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/universe arm64 Packages [1781 kB] Get:12 http://ftpmaster.internal/ubuntu lunar-proposed/universe Translation-en [628 kB] Fetched 25.6 MB in 7s (3708 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.34 perl-modules-5.34 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: lsb-base* The following NEW packages will be installed: libjansson4 libperl5.36 perl-modules-5.36 The following packages will be upgraded: adduser binutils binutils-aarch64-linux-gnu binutils-common ca-certificates coreutils cpp-12 dash debconf diffutils dpkg dpkg-dev g++-12 gcc-12 gcc-12-base gpg gpg-agent gpgconf gpgv libapparmor1 libasan8 libatomic1 libaudit-common libaudit1 libbinutils libcap2 libcc1-0 libctf-nobfd0 libctf0 libdpkg-perl libgcc-12-dev libgcc-s1 libgomp1 libgprofng0 libgssapi-krb5-2 libhwasan0 libitm1 libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblsan0 liblz4-1 liblzma5 libsqlite3-0 libssl3 libstdc++-12-dev libstdc++6 libsystemd-shared libsystemd0 libtsan2 libubsan1 libudev1 linux-libc-dev openssl perl perl-base systemd systemd-sysv sysvinit-utils xz-utils zlib1g 63 upgraded, 3 newly installed, 1 to remove and 0 not upgraded. Need to get 83.2 MB of archives. After this operation, 53.2 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 coreutils arm64 9.1-1ubuntu1 [1347 kB] Get:2 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 dpkg arm64 1.21.12ubuntu2 [1346 kB] Get:3 http://ftpmaster.internal/ubuntu lunar/main arm64 dash arm64 0.5.11+git20210903+057cd650a4ed-9ubuntu1 [88.2 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 diffutils arm64 1:3.8-2 [171 kB] Get:5 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 perl-modules-5.36 all 5.36.0-6 [2985 kB] Get:6 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libperl5.36 arm64 5.36.0-6 [4677 kB] Get:7 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 perl arm64 5.36.0-6 [235 kB] Get:8 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 perl-base arm64 5.36.0-6 [1726 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 zlib1g arm64 1:1.2.13.dfsg-1ubuntu3 [59.3 kB] Get:10 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 sysvinit-utils arm64 3.05-7ubuntu1 [25.8 kB] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 systemd-sysv arm64 252.1-1ubuntu1 [11.4 kB] Get:12 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libaudit-common all 1:3.0.7-1ubuntu3 [4864 B] Get:13 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libaudit1 arm64 1:3.0.7-1ubuntu3 [45.2 kB] Get:14 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 liblzma5 arm64 5.4.0-0.1 [121 kB] Get:15 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 debconf all 1.5.80 [125 kB] Get:16 http://ftpmaster.internal/ubuntu lunar/main arm64 libssl3 arm64 3.0.5-2ubuntu2 [1752 kB] Get:17 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libkmod2 arm64 30+20220905-1ubuntu1 [47.7 kB] Get:18 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libapparmor1 arm64 3.0.8-1ubuntu1 [36.9 kB] Get:19 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libcap2 arm64 1:2.66-2 [27.6 kB] Get:20 http://ftpmaster.internal/ubuntu lunar/main arm64 liblz4-1 arm64 1.9.4-1 [63.4 kB] Get:21 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 systemd arm64 252.1-1ubuntu1 [2898 kB] Get:22 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libsystemd-shared arm64 252.1-1ubuntu1 [1673 kB] Get:23 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libsystemd0 arm64 252.1-1ubuntu1 [321 kB] Get:24 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libcc1-0 arm64 12.2.0-10ubuntu1 [44.1 kB] Get:25 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libctf-nobfd0 arm64 2.39.50.20221211-0ubuntu1 [96.6 kB] Get:26 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libgprofng0 arm64 2.39.50.20221211-0ubuntu1 [793 kB] Get:27 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libctf0 arm64 2.39.50.20221211-0ubuntu1 [93.0 kB] Get:28 http://ftpmaster.internal/ubuntu lunar/main arm64 libjansson4 arm64 2.14-2 [34.3 kB] Get:29 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 binutils-aarch64-linux-gnu arm64 2.39.50.20221211-0ubuntu1 [3123 kB] Get:30 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libbinutils arm64 2.39.50.20221211-0ubuntu1 [762 kB] Get:31 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 binutils-common arm64 2.39.50.20221211-0ubuntu1 [235 kB] Get:32 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 binutils arm64 2.39.50.20221211-0ubuntu1 [3224 B] Get:33 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libgomp1 arm64 12.2.0-10ubuntu1 [122 kB] Get:34 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libitm1 arm64 12.2.0-10ubuntu1 [27.9 kB] Get:35 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libatomic1 arm64 12.2.0-10ubuntu1 [10.7 kB] Get:36 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libasan8 arm64 12.2.0-10ubuntu1 [2384 kB] Get:37 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 liblsan0 arm64 12.2.0-10ubuntu1 [1028 kB] Get:38 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libtsan2 arm64 12.2.0-10ubuntu1 [2514 kB] Get:39 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libubsan1 arm64 12.2.0-10ubuntu1 [957 kB] Get:40 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libhwasan0 arm64 12.2.0-10ubuntu1 [1109 kB] Get:41 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 gcc-12-base arm64 12.2.0-10ubuntu1 [19.6 kB] Get:42 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libstdc++6 arm64 12.2.0-10ubuntu1 [647 kB] Get:43 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 g++-12 arm64 12.2.0-10ubuntu1 [10.9 MB] Get:44 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libstdc++-12-dev arm64 12.2.0-10ubuntu1 [2155 kB] Get:45 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libgcc-12-dev arm64 12.2.0-10ubuntu1 [1157 kB] Get:46 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 gcc-12 arm64 12.2.0-10ubuntu1 [19.1 MB] Get:47 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 cpp-12 arm64 12.2.0-10ubuntu1 [9581 kB] Get:48 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libgcc-s1 arm64 12.2.0-10ubuntu1 [39.5 kB] Get:49 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libudev1 arm64 252.1-1ubuntu1 [86.7 kB] Get:50 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 adduser all 3.129ubuntu1 [59.0 kB] Get:51 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 gpgv arm64 2.2.40-1ubuntu2 [133 kB] Get:52 http://ftpmaster.internal/ubuntu lunar/main arm64 openssl arm64 3.0.5-2ubuntu2 [1158 kB] Get:53 http://ftpmaster.internal/ubuntu lunar/main arm64 ca-certificates all 20211016ubuntu1 [141 kB] Get:54 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libkeyutils1 arm64 1.6.3-2 [9296 B] Get:55 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libkrb5support0 arm64 1.20.1-1build1 [31.4 kB] Get:56 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libk5crypto3 arm64 1.20.1-1build1 [85.0 kB] Get:57 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libgssapi-krb5-2 arm64 1.20.1-1build1 [139 kB] Get:58 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libkrb5-3 arm64 1.20.1-1build1 [345 kB] Get:59 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libsqlite3-0 arm64 3.40.0-2 [660 kB] Get:60 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 xz-utils arm64 5.4.0-0.1 [177 kB] Get:61 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 dpkg-dev all 1.21.12ubuntu2 [1071 kB] Get:62 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libdpkg-perl all 1.21.12ubuntu2 [242 kB] Get:63 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 gpg arm64 2.2.40-1ubuntu2 [509 kB] Get:64 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 gpgconf arm64 2.2.40-1ubuntu2 [92.5 kB] Get:65 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 gpg-agent arm64 2.2.40-1ubuntu2 [211 kB] Get:66 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 linux-libc-dev arm64 5.19.0-23.24 [1320 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 83.2 MB in 3s (26.4 MB/s) (Reading database ... 13661 files and directories currently installed.) Preparing to unpack .../coreutils_9.1-1ubuntu1_arm64.deb ... Unpacking coreutils (9.1-1ubuntu1) over (8.32-4.1ubuntu1) ... Setting up coreutils (9.1-1ubuntu1) ... (Reading database ... 13661 files and directories currently installed.) Preparing to unpack .../dpkg_1.21.12ubuntu2_arm64.deb ... Unpacking dpkg (1.21.12ubuntu2) over (1.21.11ubuntu2) ... Setting up dpkg (1.21.12ubuntu2) ... (Reading database ... 13661 files and directories currently installed.) Preparing to unpack .../dash_0.5.11+git20210903+057cd650a4ed-9ubuntu1_arm64.deb ... Unpacking dash (0.5.11+git20210903+057cd650a4ed-9ubuntu1) over (0.5.11+git20210903+057cd650a4ed-8ubuntu1) ... Setting up dash (0.5.11+git20210903+057cd650a4ed-9ubuntu1) ... (Reading database ... 13661 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.8-2_arm64.deb ... Unpacking diffutils (1:3.8-2) over (1:3.8-1) ... Setting up diffutils (1:3.8-2) ... 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Setting up zlib1g:arm64 (1:1.2.13.dfsg-1ubuntu3) ... dpkg: lsb-base: dependency problems, but removing anyway as you requested: sysvinit-utils depends on lsb-base (>= 11.0.0~). procps depends on lsb-base (>= 3.0-10). (Reading database ... 15593 files and directories currently installed.) Removing lsb-base (11.2ubuntu1) ... (Reading database ... 15585 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_3.05-7ubuntu1_arm64.deb ... Unpacking sysvinit-utils (3.05-7ubuntu1) over (3.04-1ubuntu1) ... Setting up sysvinit-utils (3.05-7ubuntu1) ... (Reading database ... 15588 files and directories currently installed.) Preparing to unpack .../systemd-sysv_252.1-1ubuntu1_arm64.deb ... Unpacking systemd-sysv (252.1-1ubuntu1) over (251.4-1ubuntu7) ... Preparing to unpack .../libaudit-common_1%3a3.0.7-1ubuntu3_all.deb ... Unpacking libaudit-common (1:3.0.7-1ubuntu3) over (1:3.0.7-1ubuntu2) ... Setting up libaudit-common (1:3.0.7-1ubuntu3) ... 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Setting up libk5crypto3:arm64 (1.20.1-1build1) ... Setting up libubsan1:arm64 (12.2.0-10ubuntu1) ... Setting up libhwasan0:arm64 (12.2.0-10ubuntu1) ... Setting up libasan8:arm64 (12.2.0-10ubuntu1) ... Setting up gpgconf (2.2.40-1ubuntu2) ... Setting up libkrb5-3:arm64 (1.20.1-1build1) ... Setting up libtsan2:arm64 (12.2.0-10ubuntu1) ... Setting up libbinutils:arm64 (2.39.50.20221211-0ubuntu1) ... Setting up openssl (3.0.5-2ubuntu2) ... Setting up libcc1-0:arm64 (12.2.0-10ubuntu1) ... Setting up libperl5.36:arm64 (5.36.0-6) ... Setting up gpg (2.2.40-1ubuntu2) ... Setting up liblsan0:arm64 (12.2.0-10ubuntu1) ... Setting up libitm1:arm64 (12.2.0-10ubuntu1) ... Setting up libkmod2:arm64 (30+20220905-1ubuntu1) ... Setting up libctf0:arm64 (2.39.50.20221211-0ubuntu1) ... Setting up gpg-agent (2.2.40-1ubuntu2) ... Setting up ca-certificates (20211016ubuntu1) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 0 added, 3 removed; done. Setting up perl (5.36.0-6) ... Setting up libgprofng0:arm64 (2.39.50.20221211-0ubuntu1) ... Setting up libgcc-12-dev:arm64 (12.2.0-10ubuntu1) ... Setting up libgssapi-krb5-2:arm64 (1.20.1-1build1) ... Setting up libsystemd-shared:arm64 (252.1-1ubuntu1) ... Setting up libdpkg-perl (1.21.12ubuntu2) ... Setting up libstdc++-12-dev:arm64 (12.2.0-10ubuntu1) ... Setting up binutils-aarch64-linux-gnu (2.39.50.20221211-0ubuntu1) ... Setting up systemd (252.1-1ubuntu1) ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from random generator. Setting up binutils (2.39.50.20221211-0ubuntu1) ... Setting up dpkg-dev (1.21.12ubuntu2) ... Setting up gcc-12 (12.2.0-10ubuntu1) ... Setting up g++-12 (12.2.0-10ubuntu1) ... Setting up systemd-sysv (252.1-1ubuntu1) ... Processing triggers for debianutils (5.7-0.4) ... Processing triggers for libc-bin (2.36-0ubuntu4) ... (Reading database ... 15615 files and directories currently installed.) Purging configuration files for lsb-base (11.2ubuntu1) ... Processing triggers for ca-certificates (20211016ubuntu1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-25411816 arm64 lunar-proposed -c chroot:build-PACKAGEBUILD-25411816 --arch=arm64 --dist=lunar-proposed --nolog r-bioc-genomicranges_1.50.2+dfsg-1.dsc Initiating build PACKAGEBUILD-25411816 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-135-generic #152-Ubuntu SMP Wed Nov 23 20:19:17 UTC 2022 aarch64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-arm64-019.buildd +==============================================================================+ | r-bioc-genomicranges 1.50.2+dfsg-1 (arm64) Tue, 20 Dec 2022 06:22:48 +0000 | +==============================================================================+ Package: r-bioc-genomicranges Version: 1.50.2+dfsg-1 Source Version: 1.50.2+dfsg-1 Distribution: lunar-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-25411816/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-genomicranges-xB8HJ6/resolver-2KKwe4' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-bioc-genomicranges_1.50.2+dfsg-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/r-bioc-genomicranges-xB8HJ6/r-bioc-genomicranges-1.50.2+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-genomicranges-xB8HJ6' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.37.0), r-bioc-s4vectors (>= 0.27.12), r-bioc-iranges (>= 2.31.2), r-bioc-genomeinfodb, r-bioc-xvector (>= 0.29.2), build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.37.0), r-bioc-s4vectors (>= 0.27.12), r-bioc-iranges (>= 2.31.2), r-bioc-genomeinfodb, r-bioc-xvector (>= 0.29.2), build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [442 B] Get:5 copy:/<>/apt_archive ./ Packages [526 B] Fetched 1925 B in 0s (107 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.34 perl-modules-5.34 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils dctrl-tools debhelper debugedit dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-12 groff-base icu-devtools intltool-debian libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libclone-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdw1 libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-12-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu71 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libldap2 liblerc4 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpsl5 libreadline-dev librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db pkg-config pkgconf pkgconf-bin po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-iranges r-bioc-s4vectors r-bioc-xvector r-bioc-zlibbioc r-cran-bitops r-cran-rcurl ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc gfortran-12-doc libcoarrays-dev groff liblapack-doc low-memory-monitor icu-doc liblzma-doc ncurses-doc libscalar-number-perl readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk libbusiness-isbn-perl libregexp-ipv6-perl libwww-perl libcurl4-gnutls-dev m4-doc apparmor less www-browser libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo r-bioc-biobase r-bioc-genomicranges r-bioc-delayedarray r-bioc-biostrings r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-runit r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-bsgenome r-bioc-biocstyle r-cran-knitr r-bioc-summarizedexperiment r-cran-matrix r-bioc-shortread r-bioc-graph r-cran-data.table r-cran-xml Recommended packages: devscripts cme git-buildpackage curl | wget | lynx bzip2-doc libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libldap-common libdevel-partialdump-perl libpng-tools publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl r-recommended r-doc-html libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils dctrl-tools debhelper debugedit dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-12 groff-base icu-devtools intltool-debian libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libclone-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdw1 libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-12-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu71 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libldap2 liblerc4 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpsl5 libreadline-dev librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db pkg-config pkgconf pkgconf-bin po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-iranges r-bioc-s4vectors r-bioc-xvector r-bioc-zlibbioc r-cran-bitops r-cran-rcurl sbuild-build-depends-main-dummy ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 182 newly installed, 0 to remove and 0 not upgraded. Need to get 112 MB of archives. After this operation, 307 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [744 B] Get:2 http://ftpmaster.internal/ubuntu lunar/main arm64 libbsd0 arm64 0.11.7-1 [42.9 kB] Get:3 http://ftpmaster.internal/ubuntu lunar/main arm64 libelf1 arm64 0.188-1 [51.2 kB] Get:4 http://ftpmaster.internal/ubuntu lunar/main arm64 libexpat1 arm64 2.5.0-1 [71.2 kB] Get:5 http://ftpmaster.internal/ubuntu lunar/main arm64 libfribidi0 arm64 1.0.8-2.1ubuntu1 [26.3 kB] Get:6 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libglib2.0-0 arm64 2.74.3-1 [1434 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/main arm64 libicu71 arm64 71.1-3ubuntu1 [10.5 MB] Get:8 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libxml2 arm64 2.9.14+dfsg-1.1 [722 kB] Get:9 http://ftpmaster.internal/ubuntu lunar/main arm64 ucf all 3.0043 [56.1 kB] Get:10 http://ftpmaster.internal/ubuntu lunar/main arm64 bsdextrautils arm64 2.38.1-4ubuntu1 [69.1 kB] Get:11 http://ftpmaster.internal/ubuntu lunar/main arm64 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Get:22 http://ftpmaster.internal/ubuntu lunar/main arm64 libxcb1 arm64 1.15-1 [47.6 kB] Get:23 http://ftpmaster.internal/ubuntu lunar/main arm64 libx11-data all 2:1.8.1-2 [118 kB] Get:24 http://ftpmaster.internal/ubuntu lunar/main arm64 libx11-6 arm64 2:1.8.1-2 [646 kB] Get:25 http://ftpmaster.internal/ubuntu lunar/main arm64 libxext6 arm64 2:1.3.4-1build1 [31.1 kB] Get:26 http://ftpmaster.internal/ubuntu lunar/main arm64 libxmuu1 arm64 2:1.1.3-3 [10.4 kB] Get:27 http://ftpmaster.internal/ubuntu lunar/main arm64 man-db arm64 2.11.1-1 [1213 kB] Get:28 http://ftpmaster.internal/ubuntu lunar/main arm64 xauth arm64 1:1.1.1-1 [27.1 kB] Get:29 http://ftpmaster.internal/ubuntu lunar/main arm64 m4 arm64 1.4.19-1 [240 kB] Get:30 http://ftpmaster.internal/ubuntu lunar/main arm64 autoconf all 2.71-2 [338 kB] Get:31 http://ftpmaster.internal/ubuntu lunar/main arm64 autotools-dev all 20220109.1 [44.9 kB] Get:32 http://ftpmaster.internal/ubuntu lunar/main arm64 automake all 1:1.16.5-1.3 [558 kB] Get:33 http://ftpmaster.internal/ubuntu lunar/main arm64 autopoint all 0.21-10 [421 kB] Get:34 http://ftpmaster.internal/ubuntu lunar/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] Get:35 http://ftpmaster.internal/ubuntu lunar/main arm64 libdebhelper-perl all 13.10.1ubuntu1 [67.1 kB] Get:36 http://ftpmaster.internal/ubuntu lunar/main arm64 libtool all 2.4.7-5 [166 kB] Get:37 http://ftpmaster.internal/ubuntu lunar/main arm64 dh-autoreconf all 20 [16.1 kB] Get:38 http://ftpmaster.internal/ubuntu lunar/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:39 http://ftpmaster.internal/ubuntu lunar/main arm64 libsub-override-perl all 0.09-4 [8706 B] Get:40 http://ftpmaster.internal/ubuntu lunar/main arm64 libfile-stripnondeterminism-perl all 1.13.0-2 [18.2 kB] Get:41 http://ftpmaster.internal/ubuntu lunar/main arm64 dh-strip-nondeterminism all 1.13.0-2 [5308 B] Get:42 http://ftpmaster.internal/ubuntu lunar/main arm64 libdw1 arm64 0.188-1 [245 kB] Get:43 http://ftpmaster.internal/ubuntu lunar/main arm64 debugedit arm64 1:5.0-5 [45.9 kB] Get:44 http://ftpmaster.internal/ubuntu lunar/main arm64 dwz arm64 0.14+20220924-2 [110 kB] Get:45 http://ftpmaster.internal/ubuntu lunar/main arm64 gettext arm64 0.21-10 [842 kB] Get:46 http://ftpmaster.internal/ubuntu lunar/main arm64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:47 http://ftpmaster.internal/ubuntu lunar/main arm64 po-debconf all 1.0.21+nmu1 [233 kB] Get:48 http://ftpmaster.internal/ubuntu lunar/main arm64 debhelper all 13.10.1ubuntu1 [924 kB] Get:49 http://ftpmaster.internal/ubuntu lunar/main arm64 zip arm64 3.0-12build2 [173 kB] Get:50 http://ftpmaster.internal/ubuntu lunar/main arm64 unzip arm64 6.0-27ubuntu1 [170 kB] Get:51 http://ftpmaster.internal/ubuntu lunar/main arm64 libpaper1 arm64 1.1.28build2 [13.6 kB] Get:52 http://ftpmaster.internal/ubuntu lunar/main arm64 libpaper-utils arm64 1.1.28build2 [8498 B] Get:53 http://ftpmaster.internal/ubuntu lunar/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] Get:54 http://ftpmaster.internal/ubuntu lunar/main arm64 libblas3 arm64 3.11.0-2 [141 kB] Get:55 http://ftpmaster.internal/ubuntu lunar/main arm64 libbrotli1 arm64 1.0.9-2build7 [311 kB] Get:56 http://ftpmaster.internal/ubuntu lunar/main arm64 libfreetype6 arm64 2.12.1+dfsg-3 [381 kB] Get:57 http://ftpmaster.internal/ubuntu lunar/main arm64 fonts-dejavu-core all 2.37-2build2 [1137 kB] Get:58 http://ftpmaster.internal/ubuntu lunar/main arm64 fontconfig-config all 2.13.1-4.4ubuntu1 [28.2 kB] Get:59 http://ftpmaster.internal/ubuntu lunar/main arm64 libfontconfig1 arm64 2.13.1-4.4ubuntu1 [132 kB] Get:60 http://ftpmaster.internal/ubuntu lunar/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] Get:61 http://ftpmaster.internal/ubuntu lunar/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] Get:62 http://ftpmaster.internal/ubuntu lunar/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] Get:63 http://ftpmaster.internal/ubuntu lunar/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] Get:64 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libcairo2 arm64 1.16.0-7 [501 kB] Get:65 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg-6ubuntu3 [21.0 kB] Get:66 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libsasl2-2 arm64 2.1.28+dfsg-6ubuntu3 [57.3 kB] Get:67 http://ftpmaster.internal/ubuntu lunar/main arm64 libldap2 arm64 2.6.3+dfsg-1~exp1ubuntu1 [181 kB] Get:68 http://ftpmaster.internal/ubuntu lunar/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2build4 [59.2 kB] Get:69 http://ftpmaster.internal/ubuntu lunar/main arm64 libssh-4 arm64 0.10.4-2 [184 kB] Get:70 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libcurl4 arm64 7.86.0-2build1 [286 kB] Get:71 http://ftpmaster.internal/ubuntu lunar/main arm64 libjpeg-turbo8 arm64 2.1.2-0ubuntu1 [129 kB] Get:72 http://ftpmaster.internal/ubuntu lunar/main arm64 libjpeg8 arm64 8c-2ubuntu10 [2264 B] Get:73 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libgfortran5 arm64 12.2.0-10ubuntu1 [417 kB] Get:74 http://ftpmaster.internal/ubuntu lunar/main arm64 liblapack3 arm64 3.11.0-2 [2136 kB] Get:75 http://ftpmaster.internal/ubuntu lunar/main arm64 fontconfig arm64 2.13.1-4.4ubuntu1 [182 kB] Get:76 http://ftpmaster.internal/ubuntu lunar/main arm64 libgraphite2-3 arm64 1.3.14-1build2 [68.9 kB] Get:77 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libharfbuzz0b arm64 5.3.1-2 [403 kB] Get:78 http://ftpmaster.internal/ubuntu lunar/main arm64 libthai-data all 0.1.29-1build1 [162 kB] Get:79 http://ftpmaster.internal/ubuntu lunar/main arm64 libdatrie1 arm64 0.2.13-2 [19.8 kB] Get:80 http://ftpmaster.internal/ubuntu lunar/main arm64 libthai0 arm64 0.1.29-1build1 [18.4 kB] Get:81 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libpango-1.0-0 arm64 1.50.12+ds-1 [216 kB] Get:82 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libpangoft2-1.0-0 arm64 1.50.12+ds-1 [41.9 kB] Get:83 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libpangocairo-1.0-0 arm64 1.50.12+ds-1 [27.7 kB] Get:84 http://ftpmaster.internal/ubuntu lunar/main arm64 libtcl8.6 arm64 8.6.13+dfsg-1 [980 kB] Get:85 http://ftpmaster.internal/ubuntu lunar/main arm64 libdeflate0 arm64 1.14-1 [59.7 kB] Get:86 http://ftpmaster.internal/ubuntu lunar/main arm64 libjbig0 arm64 2.1-6ubuntu1 [28.8 kB] Get:87 http://ftpmaster.internal/ubuntu lunar/main arm64 liblerc4 arm64 4.0.0+ds-2ubuntu2 [150 kB] Get:88 http://ftpmaster.internal/ubuntu lunar/main arm64 libwebp7 arm64 1.2.2-2build1 [194 kB] Get:89 http://ftpmaster.internal/ubuntu lunar/main arm64 libtiff5 arm64 4.4.0-6ubuntu1 [182 kB] Get:90 http://ftpmaster.internal/ubuntu lunar/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] Get:91 http://ftpmaster.internal/ubuntu lunar/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] Get:92 http://ftpmaster.internal/ubuntu lunar/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] Get:93 http://ftpmaster.internal/ubuntu lunar/main arm64 libtk8.6 arm64 8.6.13-1 [760 kB] Get:94 http://ftpmaster.internal/ubuntu lunar/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] Get:95 http://ftpmaster.internal/ubuntu lunar/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] Get:96 http://ftpmaster.internal/ubuntu lunar/main arm64 libxt6 arm64 1:1.2.1-1 [171 kB] Get:97 http://ftpmaster.internal/ubuntu lunar/universe arm64 r-base-core arm64 4.2.2.20221110-1 [26.0 MB] Get:98 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libgfortran-12-dev arm64 12.2.0-10ubuntu1 [472 kB] Get:99 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 gfortran-12 arm64 12.2.0-10ubuntu1 [10.1 MB] Get:100 http://ftpmaster.internal/ubuntu lunar/main arm64 gfortran arm64 4:12.2.0-1ubuntu1 [1166 B] Get:101 http://ftpmaster.internal/ubuntu lunar/main arm64 libblas-dev arm64 3.11.0-2 [110 kB] Get:102 http://ftpmaster.internal/ubuntu lunar/main arm64 liblapack-dev arm64 3.11.0-2 [3687 kB] Get:103 http://ftpmaster.internal/ubuntu lunar/main arm64 libncurses-dev arm64 6.3+20220423-2 [379 kB] Get:104 http://ftpmaster.internal/ubuntu lunar/main arm64 libncurses5-dev arm64 6.3+20220423-2 [792 B] Get:105 http://ftpmaster.internal/ubuntu lunar/main arm64 libreadline-dev arm64 8.2-1.2 [175 kB] Get:106 http://ftpmaster.internal/ubuntu lunar/main arm64 libjpeg-turbo8-dev arm64 2.1.2-0ubuntu1 [246 kB] Get:107 http://ftpmaster.internal/ubuntu lunar/main arm64 libjpeg8-dev arm64 8c-2ubuntu10 [1476 B] Get:108 http://ftpmaster.internal/ubuntu lunar/main arm64 libjpeg-dev arm64 8c-2ubuntu10 [1474 B] Get:109 http://ftpmaster.internal/ubuntu lunar/main arm64 libpcre2-16-0 arm64 10.40-1ubuntu1 [193 kB] Get:110 http://ftpmaster.internal/ubuntu lunar/main arm64 libpcre2-32-0 arm64 10.40-1ubuntu1 [181 kB] Get:111 http://ftpmaster.internal/ubuntu lunar/main arm64 libpcre2-posix3 arm64 10.40-1ubuntu1 [5996 B] Get:112 http://ftpmaster.internal/ubuntu lunar/main arm64 libpcre2-dev arm64 10.40-1ubuntu1 [671 kB] Get:113 http://ftpmaster.internal/ubuntu lunar/main arm64 libpcre16-3 arm64 2:8.39-14 [150 kB] Get:114 http://ftpmaster.internal/ubuntu lunar/main arm64 libpcre32-3 arm64 2:8.39-14 [141 kB] Get:115 http://ftpmaster.internal/ubuntu lunar/main arm64 libpcrecpp0v5 arm64 2:8.39-14 [16.1 kB] Get:116 http://ftpmaster.internal/ubuntu lunar/main arm64 libpcre3-dev arm64 2:8.39-14 [527 kB] Get:117 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 zlib1g-dev arm64 1:1.2.13.dfsg-1ubuntu3 [893 kB] Get:118 http://ftpmaster.internal/ubuntu lunar/main arm64 libpng-dev arm64 1.6.39-2 [265 kB] Get:119 http://ftpmaster.internal/ubuntu lunar/main arm64 libbz2-dev arm64 1.0.8-5build1 [34.5 kB] Get:120 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 liblzma-dev arm64 5.4.0-0.1 [176 kB] Get:121 http://ftpmaster.internal/ubuntu lunar/main arm64 icu-devtools arm64 71.1-3ubuntu1 [198 kB] Get:122 http://ftpmaster.internal/ubuntu lunar/main arm64 libicu-dev arm64 71.1-3ubuntu1 [11.5 MB] Get:123 http://ftpmaster.internal/ubuntu lunar-proposed/universe arm64 libpkgconf3 arm64 1.8.0-12 [29.3 kB] Get:124 http://ftpmaster.internal/ubuntu lunar-proposed/universe arm64 pkgconf-bin arm64 1.8.0-12 [20.4 kB] Get:125 http://ftpmaster.internal/ubuntu lunar-proposed/universe arm64 pkgconf arm64 1.8.0-12 [16.4 kB] Get:126 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 pkg-config arm64 1.8.0-12 [5194 B] Get:127 http://ftpmaster.internal/ubuntu lunar/universe arm64 r-base-dev all 4.2.2.20221110-1 [4298 B] Get:128 http://ftpmaster.internal/ubuntu lunar/main arm64 libfile-which-perl all 1.27-2 [12.5 kB] Get:129 http://ftpmaster.internal/ubuntu lunar/universe arm64 libswitch-perl all 2.17-3 [18.9 kB] Get:130 http://ftpmaster.internal/ubuntu lunar/main arm64 libclone-perl arm64 0.46-1 [10.5 kB] Get:131 http://ftpmaster.internal/ubuntu lunar/main arm64 libencode-locale-perl all 1.05-3 [11.6 kB] Get:132 http://ftpmaster.internal/ubuntu lunar/main arm64 libtimedate-perl all 2.3300-2 [34.0 kB] Get:133 http://ftpmaster.internal/ubuntu lunar/main arm64 libhttp-date-perl all 6.05-2 [9946 B] Get:134 http://ftpmaster.internal/ubuntu lunar/main arm64 libio-html-perl all 1.004-3 [15.9 kB] Get:135 http://ftpmaster.internal/ubuntu lunar/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.1 kB] Get:136 http://ftpmaster.internal/ubuntu lunar/main arm64 liburi-perl all 5.17-1ubuntu1 [80.3 kB] Get:137 http://ftpmaster.internal/ubuntu lunar/main arm64 libhttp-message-perl all 6.44-1 [77.4 kB] Get:138 http://ftpmaster.internal/ubuntu lunar/main arm64 libparams-util-perl arm64 1.102-2 [20.9 kB] Get:139 http://ftpmaster.internal/ubuntu lunar/main arm64 libsub-install-perl all 0.928-3 [8980 B] Get:140 http://ftpmaster.internal/ubuntu lunar/main arm64 libdata-optlist-perl all 0.112-1 [11.0 kB] Get:141 http://ftpmaster.internal/ubuntu lunar/main arm64 libb-hooks-op-check-perl arm64 0.22-2build1 [9336 B] Get:142 http://ftpmaster.internal/ubuntu lunar/main arm64 libdynaloader-functions-perl all 0.003-3 [12.1 kB] Get:143 http://ftpmaster.internal/ubuntu lunar/main arm64 libdevel-callchecker-perl arm64 0.008-2 [13.8 kB] Get:144 http://ftpmaster.internal/ubuntu lunar/main arm64 libparams-classify-perl arm64 0.015-2build2 [20.6 kB] Get:145 http://ftpmaster.internal/ubuntu lunar/main arm64 libmodule-runtime-perl all 0.016-2 [16.4 kB] Get:146 http://ftpmaster.internal/ubuntu lunar/main arm64 libtry-tiny-perl all 0.31-2 [20.8 kB] Get:147 http://ftpmaster.internal/ubuntu lunar/main arm64 libmodule-implementation-perl all 0.09-2 [12.0 kB] Get:148 http://ftpmaster.internal/ubuntu lunar/main arm64 libpackage-stash-perl all 0.40-1 [19.5 kB] Get:149 http://ftpmaster.internal/ubuntu lunar/universe arm64 libclass-load-perl all 0.25-2 [12.7 kB] Get:150 http://ftpmaster.internal/ubuntu lunar/universe arm64 libclass-load-xs-perl arm64 0.10-2build1 [13.5 kB] Get:151 http://ftpmaster.internal/ubuntu lunar/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [6718 B] Get:152 http://ftpmaster.internal/ubuntu lunar/universe arm64 libdevel-globaldestruction-perl all 0.14-4 [6114 B] Get:153 http://ftpmaster.internal/ubuntu lunar/universe arm64 libalgorithm-c3-perl all 0.11-2 [10.2 kB] Get:154 http://ftpmaster.internal/ubuntu lunar/universe arm64 libclass-c3-perl all 0.35-2 [18.4 kB] Get:155 http://ftpmaster.internal/ubuntu lunar/universe arm64 libmro-compat-perl all 0.15-2 [10.1 kB] Get:156 http://ftpmaster.internal/ubuntu lunar/universe arm64 libdevel-overloadinfo-perl all 0.007-1 [7422 B] Get:157 http://ftpmaster.internal/ubuntu lunar/main arm64 libdevel-stacktrace-perl all 2.0400-2 [22.2 kB] Get:158 http://ftpmaster.internal/ubuntu lunar/main arm64 libsub-exporter-perl all 0.988-1 [50.6 kB] Get:159 http://ftpmaster.internal/ubuntu lunar/universe arm64 libeval-closure-perl all 0.14-3 [10.1 kB] Get:160 http://ftpmaster.internal/ubuntu lunar/universe arm64 libdist-checkconflicts-perl all 0.11-2 [9942 B] Get:161 http://ftpmaster.internal/ubuntu lunar/universe arm64 libmodule-runtime-conflicts-perl all 0.003-2 [6956 B] Get:162 http://ftpmaster.internal/ubuntu lunar/main arm64 libsub-name-perl arm64 0.26-2build1 [10.6 kB] Get:163 http://ftpmaster.internal/ubuntu lunar/universe arm64 libpackage-deprecationmanager-perl all 0.17-2 [15.8 kB] Get:164 http://ftpmaster.internal/ubuntu lunar/main arm64 libpackage-stash-xs-perl arm64 0.30-1build1 [18.0 kB] Get:165 http://ftpmaster.internal/ubuntu lunar/universe arm64 libmoose-perl arm64 2.2200-1build3 [748 kB] Get:166 http://ftpmaster.internal/ubuntu lunar/main arm64 libvariable-magic-perl arm64 0.63-1 [34.2 kB] Get:167 http://ftpmaster.internal/ubuntu lunar/main arm64 libb-hooks-endofscope-perl all 0.26-1 [17.8 kB] Get:168 http://ftpmaster.internal/ubuntu lunar/main arm64 libsub-identify-perl arm64 0.14-3 [9738 B] Get:169 http://ftpmaster.internal/ubuntu lunar/main arm64 libnamespace-clean-perl all 0.27-2 [14.0 kB] Get:170 http://ftpmaster.internal/ubuntu lunar-proposed/main arm64 libcurl3-gnutls arm64 7.86.0-2build1 [281 kB] Get:171 http://ftpmaster.internal/ubuntu lunar/universe arm64 libwww-curl-perl arm64 4.17-8 [56.9 kB] Get:172 http://ftpmaster.internal/ubuntu lunar/universe arm64 libwww-curl-simple-perl all 0.100191-3 [11.2 kB] Get:173 http://ftpmaster.internal/ubuntu lunar/universe arm64 dh-r all 20210218ubuntu1 [36.4 kB] Get:174 http://ftpmaster.internal/ubuntu lunar/universe arm64 r-bioc-biocgenerics all 0.44.0-2 [598 kB] Get:175 http://ftpmaster.internal/ubuntu lunar-proposed/universe arm64 r-bioc-s4vectors arm64 0.36.1-1 [2019 kB] Get:176 http://ftpmaster.internal/ubuntu lunar/universe arm64 r-bioc-iranges arm64 2.32.0-1 [2215 kB] Get:177 http://ftpmaster.internal/ubuntu lunar/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] Get:178 http://ftpmaster.internal/ubuntu lunar/universe arm64 r-cran-rcurl arm64 1.98-1.9+dfsg-1 [791 kB] Get:179 http://ftpmaster.internal/ubuntu lunar/universe arm64 r-bioc-genomeinfodbdata all 1.2.9-1 [11.7 MB] Get:180 http://ftpmaster.internal/ubuntu lunar/universe arm64 r-bioc-genomeinfodb all 1.34.4-1 [3956 kB] Get:181 http://ftpmaster.internal/ubuntu lunar/universe arm64 r-bioc-zlibbioc all 1.44.0+dfsg-1 [9396 B] Get:182 http://ftpmaster.internal/ubuntu lunar/universe arm64 r-bioc-xvector arm64 0.38.0-1 [617 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 112 MB in 10s (11.2 MB/s) Selecting previously unselected package libbsd0:arm64. (Reading database ... 15615 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.11.7-1_arm64.deb ... Unpacking libbsd0:arm64 (0.11.7-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../001-libelf1_0.188-1_arm64.deb ... Unpacking libelf1:arm64 (0.188-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../002-libexpat1_2.5.0-1_arm64.deb ... Unpacking libexpat1:arm64 (2.5.0-1) ... Selecting previously unselected package libfribidi0:arm64. Preparing to unpack .../003-libfribidi0_1.0.8-2.1ubuntu1_arm64.deb ... Unpacking libfribidi0:arm64 (1.0.8-2.1ubuntu1) ... Selecting previously unselected package libglib2.0-0:arm64. Preparing to unpack .../004-libglib2.0-0_2.74.3-1_arm64.deb ... Unpacking libglib2.0-0:arm64 (2.74.3-1) ... Selecting previously unselected package libicu71:arm64. Preparing to unpack .../005-libicu71_71.1-3ubuntu1_arm64.deb ... Unpacking libicu71:arm64 (71.1-3ubuntu1) ... 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Unpacking libclass-load-xs-perl (0.10-2build1) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../149-libsub-exporter-progressive-perl_0.001013-3_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001013-3) ... Selecting previously unselected package libdevel-globaldestruction-perl. Preparing to unpack .../150-libdevel-globaldestruction-perl_0.14-4_all.deb ... Unpacking libdevel-globaldestruction-perl (0.14-4) ... Selecting previously unselected package libalgorithm-c3-perl. Preparing to unpack .../151-libalgorithm-c3-perl_0.11-2_all.deb ... Unpacking libalgorithm-c3-perl (0.11-2) ... Selecting previously unselected package libclass-c3-perl. Preparing to unpack .../152-libclass-c3-perl_0.35-2_all.deb ... Unpacking libclass-c3-perl (0.35-2) ... Selecting previously unselected package libmro-compat-perl. Preparing to unpack .../153-libmro-compat-perl_0.15-2_all.deb ... Unpacking libmro-compat-perl (0.15-2) ... Selecting previously unselected package libdevel-overloadinfo-perl. Preparing to unpack .../154-libdevel-overloadinfo-perl_0.007-1_all.deb ... Unpacking libdevel-overloadinfo-perl (0.007-1) ... Selecting previously unselected package libdevel-stacktrace-perl. Preparing to unpack .../155-libdevel-stacktrace-perl_2.0400-2_all.deb ... Unpacking libdevel-stacktrace-perl (2.0400-2) ... Selecting previously unselected package libsub-exporter-perl. Preparing to unpack .../156-libsub-exporter-perl_0.988-1_all.deb ... Unpacking libsub-exporter-perl (0.988-1) ... Selecting previously unselected package libeval-closure-perl. Preparing to unpack .../157-libeval-closure-perl_0.14-3_all.deb ... Unpacking libeval-closure-perl (0.14-3) ... Selecting previously unselected package libdist-checkconflicts-perl. Preparing to unpack .../158-libdist-checkconflicts-perl_0.11-2_all.deb ... Unpacking libdist-checkconflicts-perl (0.11-2) ... Selecting previously unselected package libmodule-runtime-conflicts-perl. Preparing to unpack .../159-libmodule-runtime-conflicts-perl_0.003-2_all.deb ... Unpacking libmodule-runtime-conflicts-perl (0.003-2) ... Selecting previously unselected package libsub-name-perl:arm64. Preparing to unpack .../160-libsub-name-perl_0.26-2build1_arm64.deb ... Unpacking libsub-name-perl:arm64 (0.26-2build1) ... Selecting previously unselected package libpackage-deprecationmanager-perl. Preparing to unpack .../161-libpackage-deprecationmanager-perl_0.17-2_all.deb ... Unpacking libpackage-deprecationmanager-perl (0.17-2) ... Selecting previously unselected package libpackage-stash-xs-perl:arm64. Preparing to unpack .../162-libpackage-stash-xs-perl_0.30-1build1_arm64.deb ... Unpacking libpackage-stash-xs-perl:arm64 (0.30-1build1) ... Selecting previously unselected package libmoose-perl:arm64. Preparing to unpack .../163-libmoose-perl_2.2200-1build3_arm64.deb ... Unpacking libmoose-perl:arm64 (2.2200-1build3) ... Selecting previously unselected package libvariable-magic-perl. Preparing to unpack .../164-libvariable-magic-perl_0.63-1_arm64.deb ... Unpacking libvariable-magic-perl (0.63-1) ... Selecting previously unselected package libb-hooks-endofscope-perl. Preparing to unpack .../165-libb-hooks-endofscope-perl_0.26-1_all.deb ... Unpacking libb-hooks-endofscope-perl (0.26-1) ... Selecting previously unselected package libsub-identify-perl. Preparing to unpack .../166-libsub-identify-perl_0.14-3_arm64.deb ... Unpacking libsub-identify-perl (0.14-3) ... Selecting previously unselected package libnamespace-clean-perl. Preparing to unpack .../167-libnamespace-clean-perl_0.27-2_all.deb ... Unpacking libnamespace-clean-perl (0.27-2) ... Selecting previously unselected package libcurl3-gnutls:arm64. Preparing to unpack .../168-libcurl3-gnutls_7.86.0-2build1_arm64.deb ... Unpacking libcurl3-gnutls:arm64 (7.86.0-2build1) ... Selecting previously unselected package libwww-curl-perl:arm64. Preparing to unpack .../169-libwww-curl-perl_4.17-8_arm64.deb ... Unpacking libwww-curl-perl:arm64 (4.17-8) ... Selecting previously unselected package libwww-curl-simple-perl. Preparing to unpack .../170-libwww-curl-simple-perl_0.100191-3_all.deb ... Unpacking libwww-curl-simple-perl (0.100191-3) ... Selecting previously unselected package dh-r. Preparing to unpack .../171-dh-r_20210218ubuntu1_all.deb ... Unpacking dh-r (20210218ubuntu1) ... Selecting previously unselected package r-bioc-biocgenerics. Preparing to unpack .../172-r-bioc-biocgenerics_0.44.0-2_all.deb ... Unpacking r-bioc-biocgenerics (0.44.0-2) ... Selecting previously unselected package r-bioc-s4vectors. Preparing to unpack .../173-r-bioc-s4vectors_0.36.1-1_arm64.deb ... Unpacking r-bioc-s4vectors (0.36.1-1) ... Selecting previously unselected package r-bioc-iranges. Preparing to unpack .../174-r-bioc-iranges_2.32.0-1_arm64.deb ... Unpacking r-bioc-iranges (2.32.0-1) ... Selecting previously unselected package r-cran-bitops. Preparing to unpack .../175-r-cran-bitops_1.0-7-1_arm64.deb ... Unpacking r-cran-bitops (1.0-7-1) ... Selecting previously unselected package r-cran-rcurl. Preparing to unpack .../176-r-cran-rcurl_1.98-1.9+dfsg-1_arm64.deb ... Unpacking r-cran-rcurl (1.98-1.9+dfsg-1) ... Selecting previously unselected package r-bioc-genomeinfodbdata. Preparing to unpack .../177-r-bioc-genomeinfodbdata_1.2.9-1_all.deb ... Unpacking r-bioc-genomeinfodbdata (1.2.9-1) ... Selecting previously unselected package r-bioc-genomeinfodb. Preparing to unpack .../178-r-bioc-genomeinfodb_1.34.4-1_all.deb ... Unpacking r-bioc-genomeinfodb (1.34.4-1) ... Selecting previously unselected package r-bioc-zlibbioc. Preparing to unpack .../179-r-bioc-zlibbioc_1.44.0+dfsg-1_all.deb ... Unpacking r-bioc-zlibbioc (1.44.0+dfsg-1) ... Selecting previously unselected package r-bioc-xvector. Preparing to unpack .../180-r-bioc-xvector_0.38.0-1_arm64.deb ... Unpacking r-bioc-xvector (0.38.0-1) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../181-sbuild-build-depends-main-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libexpat1:arm64 (2.5.0-1) ... Setting up libpcrecpp0v5:arm64 (2:8.39-14) ... Setting up libpipeline1:arm64 (1.5.7-1) ... Setting up libgraphite2-3:arm64 (1.3.14-1build2) ... Setting up libpixman-1-0:arm64 (0.42.2-1) ... Setting up libicu71:arm64 (71.1-3ubuntu1) ... Setting up libfile-which-perl (1.27-2) ... Setting up libxau6:arm64 (1:1.0.9-1build5) ... Setting up libncurses-dev:arm64 (6.3+20220423-2) ... Setting up libpsl5:arm64 (0.21.0-1.2build2) ... Setting up liblerc4:arm64 (4.0.0+ds-2ubuntu2) ... Setting up bsdextrautils (2.38.1-4ubuntu1) ... Setting up libpcre16-3:arm64 (2:8.39-14) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libdatrie1:arm64 (0.2.13-2) ... Setting up libmagic-mgc (1:5.41-4) ... Setting up libclone-perl:arm64 (0.46-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libsub-identify-perl (0.14-3) ... Setting up libglib2.0-0:arm64 (2.74.3-1) ... No schema files found: doing nothing. Setting up unzip (6.0-27ubuntu1) ... Setting up libdebhelper-perl (13.10.1ubuntu1) ... Setting up libbrotli1:arm64 (1.0.9-2build7) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up x11-common (1:7.7+23ubuntu2) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libtry-tiny-perl (0.31-2) ... Setting up libnghttp2-14:arm64 (1.51.0-1) ... Setting up libmagic1:arm64 (1:5.41-4) ... Setting up libdeflate0:arm64 (1.14-1) ... Setting up gettext-base (0.21-10) ... Setting up m4 (1.4.19-1) ... Setting up libencode-locale-perl (1.05-3) ... Setting up file (1:5.41-4) ... Setting up libreadline-dev:arm64 (8.2-1.2) ... Setting up libjbig0:arm64 (2.1-6ubuntu1) ... Setting up libpcre2-16-0:arm64 (10.40-1ubuntu1) ... Setting up libsub-install-perl (0.928-3) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg-6ubuntu3) ... Setting up zip (3.0-12build2) ... Setting up libpackage-stash-xs-perl:arm64 (0.30-1build1) ... Setting up autotools-dev (20220109.1) ... Setting up libpcre2-32-0:arm64 (10.40-1ubuntu1) ... Setting up libblas3:arm64 (3.11.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libpkgconf3:arm64 (1.8.0-12) ... Setting up libalgorithm-c3-perl (0.11-2) ... Setting up libswitch-perl (2.17-3) ... Setting up libfreetype6:arm64 (2.12.1+dfsg-3) ... Setting up libx11-data (2:1.8.1-2) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2build4) ... Setting up libfribidi0:arm64 (1.0.8-2.1ubuntu1) ... Setting up libpcre32-3:arm64 (2:8.39-14) ... Setting up libvariable-magic-perl (0.63-1) ... Setting up libio-html-perl (1.004-3) ... Setting up libtcl8.6:arm64 (8.6.13+dfsg-1) ... Setting up autopoint (0.21-10) ... Setting up libb-hooks-op-check-perl:arm64 (0.22-2build1) ... Setting up icu-devtools (71.1-3ubuntu1) ... Setting up fonts-dejavu-core (2.37-2build2) ... Setting up ucf (3.0043) ... Setting up pkgconf-bin (1.8.0-12) ... Setting up libjpeg-turbo8:arm64 (2.1.2-0ubuntu1) ... Setting up libparams-util-perl (1.102-2) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg-6ubuntu3) ... Setting up libssh-4:arm64 (0.10.4-2) ... Setting up libgfortran5:arm64 (12.2.0-10ubuntu1) ... Setting up autoconf (2.71-2) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libwebp7:arm64 (1.2.2-2build1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up liblzma-dev:arm64 (5.4.0-0.1) ... Setting up libsub-name-perl:arm64 (0.26-2build1) ... Setting up zlib1g-dev:arm64 (1:1.2.13.dfsg-1ubuntu3) ... Setting up libpcre2-posix3:arm64 (10.40-1ubuntu1) ... Setting up libuchardet0:arm64 (0.0.7-1build2) ... Setting up libncurses5-dev:arm64 (6.3+20220423-2) ... Setting up libsub-override-perl (0.09-4) ... Setting up libharfbuzz0b:arm64 (5.3.1-2) ... Setting up libthai-data (0.1.29-1build1) ... Setting up libdevel-globaldestruction-perl (0.14-4) ... Setting up libdevel-stacktrace-perl (2.0400-2) ... Setting up libbsd0:arm64 (0.11.7-1) ... Setting up libelf1:arm64 (0.188-1) ... Setting up libicu-dev:arm64 (71.1-3ubuntu1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.1) ... Setting up xdg-utils (1.1.3-4.1ubuntu3) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libldap2:arm64 (2.6.3+dfsg-1~exp1ubuntu1) ... Setting up liburi-perl (5.17-1ubuntu1) ... Setting up libblas-dev:arm64 (3.11.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode Setting up dctrl-tools (2.24-3build2) ... Setting up libbz2-dev:arm64 (1.0.8-5build1) ... Setting up libjpeg8:arm64 (8c-2ubuntu10) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.0-2) ... Setting up libpaper1:arm64 (1.1.28build2) ... Creating config file /etc/papersize with new version Setting up libice6:arm64 (2:1.0.10-1build2) ... Setting up libhttp-date-perl (6.05-2) ... Setting up libdw1:arm64 (0.188-1) ... Setting up libjpeg-turbo8-dev:arm64 (2.1.2-0ubuntu1) ... Setting up libxdmcp6:arm64 (1:1.1.3-0ubuntu5) ... Setting up liblapack3:arm64 (3.11.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libxcb1:arm64 (1.15-1) ... Setting up gettext (0.21-10) ... Setting up libpcre2-dev:arm64 (10.40-1ubuntu1) ... Setting up libtool (2.4.7-5) ... Setting up libxcb-render0:arm64 (1.15-1) ... Setting up libpcre3-dev:arm64 (2:8.39-14) ... Setting up fontconfig-config (2.13.1-4.4ubuntu1) ... Setting up libpng-dev:arm64 (1.6.39-2) ... Setting up libcurl3-gnutls:arm64 (7.86.0-2build1) ... Setting up libgfortran-12-dev:arm64 (12.2.0-10ubuntu1) ... Setting up libxcb-shm0:arm64 (1.15-1) ... Setting up libpaper-utils (1.1.28build2) ... Setting up libclass-c3-perl (0.35-2) ... Setting up libdevel-callchecker-perl:arm64 (0.008-2) ... Setting up pkgconf:arm64 (1.8.0-12) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libthai0:arm64 (0.1.29-1build1) ... Setting up gfortran-12 (12.2.0-10ubuntu1) ... Setting up liblapack-dev:arm64 (3.11.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode Setting up libdata-optlist-perl (0.112-1) ... Setting up pkg-config:arm64 (1.8.0-12) ... Setting up dh-strip-nondeterminism (1.13.0-2) ... Setting up dwz (0.14+20220924-2) ... Setting up groff-base (1.22.4-9) ... Setting up debugedit (1:5.0-5) ... Setting up libcurl4:arm64 (7.86.0-2build1) ... Setting up libx11-6:arm64 (2:1.8.1-2) ... Setting up libtiff5:arm64 (4.4.0-6ubuntu1) ... Setting up libfontconfig1:arm64 (2.13.1-4.4ubuntu1) ... Setting up libmro-compat-perl (0.15-2) ... Setting up libjpeg8-dev:arm64 (8c-2ubuntu10) ... Setting up libsm6:arm64 (2:1.2.3-1build2) ... Setting up libxmuu1:arm64 (2:1.1.3-3) ... Setting up libsub-exporter-perl (0.988-1) ... Setting up libhttp-message-perl (6.44-1) ... Setting up libeval-closure-perl (0.14-3) ... Setting up fontconfig (2.13.1-4.4ubuntu1) ... Regenerating fonts cache... done. Setting up libxrender1:arm64 (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libparams-classify-perl:arm64 (0.015-2build2) ... Setting up libpango-1.0-0:arm64 (1.50.12+ds-1) ... Setting up libjpeg-dev:arm64 (8c-2ubuntu10) ... Setting up libxext6:arm64 (2:1.3.4-1build1) ... Setting up libwww-curl-perl:arm64 (4.17-8) ... Setting up man-db (2.11.1-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up gfortran (4:12.2.0-1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:arm64 (1.16.0-7) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up libxt6:arm64 (1:1.2.1-1) ... Setting up xauth (1:1.1.1-1) ... Setting up libxss1:arm64 (1:1.2.3-1build2) ... Setting up libpangoft2-1.0-0:arm64 (1.50.12+ds-1) ... Setting up libpangocairo-1.0-0:arm64 (1.50.12+ds-1) ... Setting up libxft2:arm64 (2.3.6-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libtk8.6:arm64 (8.6.13-1) ... Setting up debhelper (13.10.1ubuntu1) ... Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up libclass-load-perl (0.25-2) ... Setting up r-base-core (4.2.2.20221110-1) ... Creating config file /etc/R/Renviron with new version Setting up libpackage-deprecationmanager-perl (0.17-2) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-2build1) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up r-bioc-genomeinfodbdata (1.2.9-1) ... Setting up r-bioc-biocgenerics (0.44.0-2) ... Setting up r-base-dev (4.2.2.20221110-1) ... Setting up libmoose-perl:arm64 (2.2200-1build3) ... Setting up r-cran-bitops (1.0-7-1) ... Setting up r-bioc-zlibbioc (1.44.0+dfsg-1) ... Setting up r-bioc-s4vectors (0.36.1-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-bioc-iranges (2.32.0-1) ... Setting up r-cran-rcurl (1.98-1.9+dfsg-1) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up r-bioc-genomeinfodb (1.34.4-1) ... Setting up r-bioc-xvector (0.38.0-1) ... Setting up dh-r (20210218ubuntu1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.36-0ubuntu4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-135-generic #152-Ubuntu SMP Wed Nov 23 20:19:17 UTC 2022 arm64 (aarch64) Toolchain package versions: binutils_2.39.50.20221211-0ubuntu1 dpkg-dev_1.21.12ubuntu2 g++-12_12.2.0-10ubuntu1 gcc-12_12.2.0-10ubuntu1 libc6-dev_2.36-0ubuntu4 libstdc++-12-dev_12.2.0-10ubuntu1 libstdc++6_12.2.0-10ubuntu1 linux-libc-dev_5.19.0-23.24 Package versions: adduser_3.129ubuntu1 advancecomp_2.4-1 apt_2.5.4 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 base-files_12.3ubuntu1 base-passwd_3.6.1 bash_5.2-1ubuntu2 binutils_2.39.50.20221211-0ubuntu1 binutils-aarch64-linux-gnu_2.39.50.20221211-0ubuntu1 binutils-common_2.39.50.20221211-0ubuntu1 bsdextrautils_2.38.1-4ubuntu1 bsdutils_1:2.38.1-4ubuntu1 build-essential_12.9ubuntu3 bzip2_1.0.8-5build1 ca-certificates_20211016ubuntu1 coreutils_9.1-1ubuntu1 cpp_4:12.2.0-1ubuntu1 cpp-12_12.2.0-10ubuntu1 dash_0.5.11+git20210903+057cd650a4ed-9ubuntu1 dctrl-tools_2.24-3build2 debconf_1.5.80 debhelper_13.10.1ubuntu1 debianutils_5.7-0.4 debugedit_1:5.0-5 dh-autoreconf_20 dh-r_20210218ubuntu1 dh-strip-nondeterminism_1.13.0-2 diffutils_1:3.8-2 dpkg_1.21.12ubuntu2 dpkg-dev_1.21.12ubuntu2 dwz_0.14+20220924-2 e2fsprogs_1.46.6~rc1-1ubuntu1 fakeroot_1.30.1-1ubuntu1 file_1:5.41-4 findutils_4.9.0-3ubuntu1 fontconfig_2.13.1-4.4ubuntu1 fontconfig-config_2.13.1-4.4ubuntu1 fonts-dejavu-core_2.37-2build2 g++_4:12.2.0-1ubuntu1 g++-12_12.2.0-10ubuntu1 gcc_4:12.2.0-1ubuntu1 gcc-12_12.2.0-10ubuntu1 gcc-12-base_12.2.0-10ubuntu1 gettext_0.21-10 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tzdata_2022g-0ubuntu2 ubuntu-keyring_2021.03.26 ucf_3.0043 unzip_6.0-27ubuntu1 usrmerge_33ubuntu1 util-linux_2.38.1-4ubuntu1 util-linux-extra_2.38.1-4ubuntu1 x11-common_1:7.7+23ubuntu2 xauth_1:1.1.1-1 xdg-utils_1.1.3-4.1ubuntu3 xz-utils_5.4.0-0.1 zip_3.0-12build2 zlib1g_1:1.2.13.dfsg-1ubuntu3 zlib1g-dev_1:1.2.13.dfsg-1ubuntu3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: r-bioc-genomicranges Binary: r-bioc-genomicranges Architecture: any Version: 1.50.2+dfsg-1 Maintainer: Debian R Packages Maintainers Uploaders: Andreas Tille Homepage: https://bioconductor.org/packages/GenomicRanges/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-genomicranges Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-genomicranges.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.37.0), r-bioc-s4vectors (>= 0.27.12), r-bioc-iranges (>= 2.31.2), r-bioc-genomeinfodb, r-bioc-xvector (>= 0.29.2) Package-List: r-bioc-genomicranges deb gnu-r optional arch=any Checksums-Sha1: e4b20f05370c759577c56a88234b1162777b632e 792652 r-bioc-genomicranges_1.50.2+dfsg.orig.tar.xz 1661bcb68adc00e4770a65b90a9014f5ddcf2243 5824 r-bioc-genomicranges_1.50.2+dfsg-1.debian.tar.xz Checksums-Sha256: ff468a88201e9db35751547c7e522e43a7db9bf93690fddb66f6bc5295398c68 792652 r-bioc-genomicranges_1.50.2+dfsg.orig.tar.xz f14057307dfa9e59c29eca7171da27107f9bf428a86bdc3399e372f8710c7402 5824 r-bioc-genomicranges_1.50.2+dfsg-1.debian.tar.xz Files: 6bde41ac4f3a5764df14df46391d6c1d 792652 r-bioc-genomicranges_1.50.2+dfsg.orig.tar.xz cb75f55b6d8ec330ab24aed2406acb0f 5824 r-bioc-genomicranges_1.50.2+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- 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No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-genomicranges_1.50.2+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-genomicranges in /<> dpkg-source: info: unpacking r-bioc-genomicranges_1.50.2+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-genomicranges_1.50.2+dfsg-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-25411816 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-25411816 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-25411816 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package r-bioc-genomicranges dpkg-buildpackage: info: source version 1.50.2+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary-arch dh binary-arch --buildsystem R dh_update_autotools_config -a -O--buildsystem=R dh_autoreconf -a -O--buildsystem=R dh_auto_configure -a -O--buildsystem=R dh_auto_build -a -O--buildsystem=R dh_auto_test -a -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=R dh_prep -a -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-genomicranges/ -a -O--buildsystem=R I: R Package: GenomicRanges Version: 1.50.2 I: Building using R version 4.2.2.20221110-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Mon, 19 Dec 2022 17:03:56 +0100 mkdir -p /<>/r-bioc-genomicranges-1.50.2\+dfsg/debian/r-bioc-genomicranges/usr/lib/R/site-library R CMD INSTALL -l /<>/r-bioc-genomicranges-1.50.2\+dfsg/debian/r-bioc-genomicranges/usr/lib/R/site-library --clean . "--built-timestamp='Mon, 19 Dec 2022 17:03:56 +0100'" * installing *source* package ‘GenomicRanges’ ... ** using staged installation ** libs make[1]: Entering directory '/<>/src' gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-gpQ1KC/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c IRanges_stubs.c -o IRanges_stubs.o gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-gpQ1KC/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c R_init_GenomicRanges.c -o R_init_GenomicRanges.o gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-gpQ1KC/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c S4Vectors_stubs.c -o S4Vectors_stubs.o gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-gpQ1KC/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c transcript_utils.c -o transcript_utils.o gcc -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -o GenomicRanges.so IRanges_stubs.o R_init_GenomicRanges.o S4Vectors_stubs.o transcript_utils.o -L/usr/lib/R/lib -lR make[1]: Leaving directory '/<>/src' make[1]: Entering directory '/<>/src' make[1]: Leaving directory '/<>/src' installing to /<>/debian/r-bioc-genomicranges/usr/lib/R/site-library/00LOCK-r-bioc-genomicranges-1.50.2+dfsg/00new/GenomicRanges/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GenomicRanges) Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 302. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 303. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 306. W: Ignoring specified R dependency: R (>= 4.0.0) I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.37.0) I: Using r-bioc-s4vectors for Depends:S4Vectors (>= 0.27.12) I: Using r-bioc-iranges for Depends:IRanges (>= 2.31.2) I: Using r-bioc-genomeinfodb for Depends:GenomeInfoDb (>= 1.15.2) I: Using r-cran-matrix for Suggests:Matrix I: Using r-bioc-biobase for Suggests:Biobase I: Using r-bioc-annotationdbi for Suggests:AnnotationDbi I: Using r-bioc-annotate for Suggests:annotate I: Using r-bioc-biostrings for Suggests:Biostrings (>= 2.25.3) I: Using r-bioc-summarizedexperiment for Suggests:SummarizedExperiment (>= 0.1.5) I: Using r-bioc-rsamtools for Suggests:Rsamtools (>= 1.13.53) I: Using r-bioc-genomicalignments for Suggests:GenomicAlignments I: Using r-bioc-rtracklayer for Suggests:rtracklayer I: Using r-bioc-bsgenome for Suggests:BSgenome I: Using r-bioc-genomicfeatures for Suggests:GenomicFeatures I: Using r-bioc-gviz for Suggests:Gviz I: Using r-bioc-variantannotation for Suggests:VariantAnnotation I: Using r-bioc-annotationhub for Suggests:AnnotationHub I: Using r-bioc-deseq2 for Suggests:DESeq2 I: Using r-bioc-dexseq for Suggests:DEXSeq I: Using r-bioc-edger for Suggests:edgeR W: Cannot find a debian package for Suggests:KEGGgraph W: Cannot find a debian package for Suggests:RNAseqData.HNRNPC.bam.chr14 W: Cannot find a debian package for Suggests:pasillaBamSubset I: Using r-bioc-keggrest for Suggests:KEGGREST W: Cannot find a debian package for Suggests:hgu95av2.db W: Cannot find a debian package for Suggests:hgu95av2probe W: Cannot find a debian package for Suggests:BSgenome.Scerevisiae.UCSC.sacCer2 W: Cannot find a debian package for Suggests:BSgenome.Hsapiens.UCSC.hg19 W: Cannot find a debian package for Suggests:BSgenome.Mmusculus.UCSC.mm10 W: Cannot find a debian package for Suggests:TxDb.Athaliana.BioMart.plantsmart22 W: Cannot find a debian package for Suggests:TxDb.Dmelanogaster.UCSC.dm3.ensGene W: Cannot find a debian package for Suggests:TxDb.Hsapiens.UCSC.hg19.knownGene W: Cannot find a debian package for Suggests:TxDb.Mmusculus.UCSC.mm10.knownGene I: Using r-cran-runit for Suggests:RUnit I: Using r-cran-digest for Suggests:digest I: Using r-cran-knitr for Suggests:knitr I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-bioc-biocstyle for Suggests:BiocStyle I: Using r-bioc-xvector for Imports:XVector (>= 0.29.2) I: Using r-bioc-s4vectors for LinkingTo:S4Vectors I: Using r-bioc-iranges for LinkingTo:IRanges I: BioConductor API version: r-api-bioc-3.16 I: Use r-bioc-genomicranges as Debian binary package for variables substitution dh_installdocs -a -O--buildsystem=R dh_installchangelogs -a -O--buildsystem=R dh_installsystemduser -a -O--buildsystem=R dh_perl -a -O--buildsystem=R dh_link -a -O--buildsystem=R dh_strip_nondeterminism -a -O--buildsystem=R dh_compress -a -O--buildsystem=R dh_fixperms -a -O--buildsystem=R dh_missing -a -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R bc7c45e934820428b55ce5a2537f7ec6269a7fe6 dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -a -O--buildsystem=R dh_gencontrol -a -O--buildsystem=R dh_md5sums -a -O--buildsystem=R dh_builddeb -a -O--buildsystem=R INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing r-bioc-genomicranges (in debian/r-bioc-genomicranges); do_strip: , oemstrip: pkgstriptranslations: processing r-bioc-genomicranges-dbgsym (in debian/.debhelper/r-bioc-genomicranges/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-bioc-genomicranges/DEBIAN/control, package r-bioc-genomicranges, directory debian/r-bioc-genomicranges pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-bioc-genomicranges ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-bioc-genomicranges' in '../r-bioc-genomicranges_1.50.2+dfsg-1_arm64.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/r-bioc-genomicranges/dbgsym-root/DEBIAN/control, package r-bioc-genomicranges-dbgsym, directory debian/.debhelper/r-bioc-genomicranges/dbgsym-root dpkg-deb: building package 'r-bioc-genomicranges-dbgsym' in 'debian/.debhelper/scratch-space/build-r-bioc-genomicranges/r-bioc-genomicranges-dbgsym_1.50.2+dfsg-1_arm64.deb'. Renaming r-bioc-genomicranges-dbgsym_1.50.2+dfsg-1_arm64.deb to r-bioc-genomicranges-dbgsym_1.50.2+dfsg-1_arm64.ddeb dpkg-genbuildinfo --build=any -O../r-bioc-genomicranges_1.50.2+dfsg-1_arm64.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../r-bioc-genomicranges_1.50.2+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-12-20T06:23:45Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-bioc-genomicranges_1.50.2+dfsg-1_arm64.changes: ------------------------------------------------- Format: 1.8 Date: Mon, 19 Dec 2022 17:03:56 +0100 Source: r-bioc-genomicranges Binary: r-bioc-genomicranges Built-For-Profiles: noudeb Architecture: arm64 Version: 1.50.2+dfsg-1 Distribution: lunar-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: r-bioc-genomicranges - BioConductor representation and manipulation of genomic intervals Changes: r-bioc-genomicranges (1.50.2+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.2 (routine-update) * Reduce piuparts noise in transitions (routine-update) Checksums-Sha1: 32e2dc3f87bbb502b701d9e1c81521c5c915587a 37458 r-bioc-genomicranges-dbgsym_1.50.2+dfsg-1_arm64.ddeb c85fc22f917d63734de920ec1d974efa3a655d54 11312 r-bioc-genomicranges_1.50.2+dfsg-1_arm64.buildinfo e166c33ef476e92d1029511c404b62ecba5c996a 1790602 r-bioc-genomicranges_1.50.2+dfsg-1_arm64.deb Checksums-Sha256: c942837b3820f830b836053c08cbd8666c500a18831d5940864d79aa36728777 37458 r-bioc-genomicranges-dbgsym_1.50.2+dfsg-1_arm64.ddeb 3f955b8dc288ed0924fa748cfdc9bf2a7c18e028967f97500534f66a31723a4f 11312 r-bioc-genomicranges_1.50.2+dfsg-1_arm64.buildinfo 7d595f4ef8366dce2fd5ec193be16ab70eb021f2823c14eb01b255747c4ab13a 1790602 r-bioc-genomicranges_1.50.2+dfsg-1_arm64.deb Files: 77bce2595c85865eb371657877b6b9be 37458 debug optional r-bioc-genomicranges-dbgsym_1.50.2+dfsg-1_arm64.ddeb 625ac6ada2064a674fff3c4d7e153d9b 11312 gnu-r optional r-bioc-genomicranges_1.50.2+dfsg-1_arm64.buildinfo 2d7d7c121db344d6256312c1c4a972fa 1790602 gnu-r optional r-bioc-genomicranges_1.50.2+dfsg-1_arm64.deb /<>/r-bioc-genomicranges_1.50.2+dfsg-1_arm64.changes.new could not be renamed to /<>/r-bioc-genomicranges_1.50.2+dfsg-1_arm64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: r-bioc-genomicranges Binary: r-bioc-genomicranges r-bioc-genomicranges-dbgsym Architecture: arm64 Version: 1.50.2+dfsg-1 Checksums-Md5: 77bce2595c85865eb371657877b6b9be 37458 r-bioc-genomicranges-dbgsym_1.50.2+dfsg-1_arm64.ddeb 2d7d7c121db344d6256312c1c4a972fa 1790602 r-bioc-genomicranges_1.50.2+dfsg-1_arm64.deb Checksums-Sha1: 32e2dc3f87bbb502b701d9e1c81521c5c915587a 37458 r-bioc-genomicranges-dbgsym_1.50.2+dfsg-1_arm64.ddeb e166c33ef476e92d1029511c404b62ecba5c996a 1790602 r-bioc-genomicranges_1.50.2+dfsg-1_arm64.deb Checksums-Sha256: c942837b3820f830b836053c08cbd8666c500a18831d5940864d79aa36728777 37458 r-bioc-genomicranges-dbgsym_1.50.2+dfsg-1_arm64.ddeb 7d595f4ef8366dce2fd5ec193be16ab70eb021f2823c14eb01b255747c4ab13a 1790602 r-bioc-genomicranges_1.50.2+dfsg-1_arm64.deb Build-Origin: Ubuntu Build-Architecture: arm64 Build-Date: Tue, 20 Dec 2022 06:23:45 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-10), autotools-dev (= 20220109.1), base-files (= 12.3ubuntu1), base-passwd (= 3.6.1), bash (= 5.2-1ubuntu2), binutils (= 2.39.50.20221211-0ubuntu1), binutils-aarch64-linux-gnu (= 2.39.50.20221211-0ubuntu1), binutils-common (= 2.39.50.20221211-0ubuntu1), bsdextrautils (= 2.38.1-4ubuntu1), bsdutils (= 1:2.38.1-4ubuntu1), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), ca-certificates (= 20211016ubuntu1), coreutils (= 9.1-1ubuntu1), cpp (= 4:12.2.0-1ubuntu1), cpp-12 (= 12.2.0-10ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-9ubuntu1), dctrl-tools (= 2.24-3build2), debconf (= 1.5.80), debhelper (= 13.10.1ubuntu1), debianutils (= 5.7-0.4), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-r (= 20210218ubuntu1), dh-strip-nondeterminism (= 1.13.0-2), diffutils (= 1:3.8-2), dpkg (= 1.21.12ubuntu2), dpkg-dev (= 1.21.12ubuntu2), dwz (= 0.14+20220924-2), file (= 1:5.41-4), findutils (= 4.9.0-3ubuntu1), fontconfig (= 2.13.1-4.4ubuntu1), fontconfig-config (= 2.13.1-4.4ubuntu1), fonts-dejavu-core (= 2.37-2build2), g++ (= 4:12.2.0-1ubuntu1), g++-12 (= 12.2.0-10ubuntu1), gcc (= 4:12.2.0-1ubuntu1), gcc-12 (= 12.2.0-10ubuntu1), gcc-12-base (= 12.2.0-10ubuntu1), gettext (= 0.21-10), gettext-base (= 0.21-10), gfortran (= 4:12.2.0-1ubuntu1), gfortran-12 (= 12.2.0-10ubuntu1), grep (= 3.8-3), groff-base (= 1.22.4-9), gzip (= 1.12-1ubuntu1), hostname (= 3.23ubuntu2), icu-devtools (= 71.1-3ubuntu1), init-system-helpers (= 1.65.2), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-2), libalgorithm-c3-perl (= 0.11-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 12.2.0-10ubuntu1), libatomic1 (= 12.2.0-10ubuntu1), libattr1 (= 1:2.5.1-3), libaudit-common (= 1:3.0.7-1ubuntu3), libaudit1 (= 1:3.0.7-1ubuntu3), libb-hooks-endofscope-perl (= 0.26-1), libb-hooks-op-check-perl (= 0.22-2build1), libbinutils (= 2.39.50.20221211-0ubuntu1), libblas-dev (= 3.11.0-2), libblas3 (= 3.11.0-2), libblkid1 (= 2.38.1-4ubuntu1), libbrotli1 (= 1.0.9-2build7), libbsd0 (= 0.11.7-1), libbz2-1.0 (= 1.0.8-5build1), libbz2-dev (= 1.0.8-5build1), libc-bin (= 2.36-0ubuntu4), libc-dev-bin (= 2.36-0ubuntu4), libc6 (= 2.36-0ubuntu4), libc6-dev (= 2.36-0ubuntu4), libcairo2 (= 1.16.0-7), libcap-ng0 (= 0.8.3-1build1), libcap2 (= 1:2.66-2), libcc1-0 (= 12.2.0-10ubuntu1), libclass-c3-perl (= 0.35-2), libclass-load-perl (= 0.25-2), libclass-load-xs-perl (= 0.10-2build1), libclone-perl (= 0.46-1), libcom-err2 (= 1.46.6~rc1-1ubuntu1), libcrypt-dev (= 1:4.4.33-1), libcrypt1 (= 1:4.4.33-1), libctf-nobfd0 (= 2.39.50.20221211-0ubuntu1), libctf0 (= 2.39.50.20221211-0ubuntu1), libcurl3-gnutls (= 7.86.0-2build1), libcurl4 (= 7.86.0-2build1), libdata-optlist-perl (= 0.112-1), libdatrie1 (= 0.2.13-2), libdb5.3 (= 5.3.28+dfsg1-0.10), libdebconfclient0 (= 0.264ubuntu1), libdebhelper-perl (= 13.10.1ubuntu1), libdeflate0 (= 1.14-1), libdevel-callchecker-perl (= 0.008-2), libdevel-globaldestruction-perl (= 0.14-4), libdevel-overloadinfo-perl (= 0.007-1), libdevel-stacktrace-perl (= 2.0400-2), libdist-checkconflicts-perl (= 0.11-2), libdpkg-perl (= 1.21.12ubuntu2), libdw1 (= 0.188-1), libdynaloader-functions-perl (= 0.003-3), libelf1 (= 0.188-1), libencode-locale-perl (= 1.05-3), libeval-closure-perl (= 0.14-3), libexpat1 (= 2.5.0-1), libffi8 (= 3.4.4-1), libfile-stripnondeterminism-perl (= 1.13.0-2), libfile-which-perl (= 1.27-2), libfontconfig1 (= 2.13.1-4.4ubuntu1), libfreetype6 (= 2.12.1+dfsg-3), libfribidi0 (= 1.0.8-2.1ubuntu1), libgcc-12-dev (= 12.2.0-10ubuntu1), libgcc-s1 (= 12.2.0-10ubuntu1), libgcrypt20 (= 1.10.1-2ubuntu1), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgfortran-12-dev (= 12.2.0-10ubuntu1), libgfortran5 (= 12.2.0-10ubuntu1), libglib2.0-0 (= 2.74.3-1), libgmp10 (= 2:6.2.1+dfsg1-1.1ubuntu1), libgnutls30 (= 3.7.7-2ubuntu2), libgomp1 (= 12.2.0-10ubuntu1), libgpg-error0 (= 1.46-1), libgprofng0 (= 2.39.50.20221211-0ubuntu1), libgraphite2-3 (= 1.3.14-1build2), libgssapi-krb5-2 (= 1.20.1-1build1), libharfbuzz0b (= 5.3.1-2), libhogweed6 (= 3.8.1-2), libhttp-date-perl (= 6.05-2), libhttp-message-perl (= 6.44-1), libhwasan0 (= 12.2.0-10ubuntu1), libice6 (= 2:1.0.10-1build2), libicu-dev (= 71.1-3ubuntu1), libicu71 (= 71.1-3ubuntu1), libidn2-0 (= 2.3.3-1build1), libio-html-perl (= 1.004-3), libisl23 (= 0.25-1), libitm1 (= 12.2.0-10ubuntu1), libjansson4 (= 2.14-2), libjbig0 (= 2.1-6ubuntu1), libjpeg-dev (= 8c-2ubuntu10), libjpeg-turbo8 (= 2.1.2-0ubuntu1), libjpeg-turbo8-dev (= 2.1.2-0ubuntu1), libjpeg8 (= 8c-2ubuntu10), libjpeg8-dev (= 8c-2ubuntu10), libk5crypto3 (= 1.20.1-1build1), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-1build1), libkrb5support0 (= 1.20.1-1build1), liblapack-dev (= 3.11.0-2), liblapack3 (= 3.11.0-2), libldap2 (= 2.6.3+dfsg-1~exp1ubuntu1), liblerc4 (= 4.0.0+ds-2ubuntu2), liblsan0 (= 12.2.0-10ubuntu1), liblwp-mediatypes-perl (= 6.04-2), liblz4-1 (= 1.9.4-1), liblzma-dev (= 5.4.0-0.1), liblzma5 (= 5.4.0-0.1), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmd0 (= 1.0.4-2), libmodule-implementation-perl (= 0.09-2), libmodule-runtime-conflicts-perl (= 0.003-2), libmodule-runtime-perl (= 0.016-2), libmoose-perl (= 2.2200-1build3), libmount1 (= 2.38.1-4ubuntu1), libmpc3 (= 1.2.1-2build1), libmpfr6 (= 4.1.0-3build3), libmro-compat-perl (= 0.15-2), libnamespace-clean-perl (= 0.27-2), libncurses-dev (= 6.3+20220423-2), libncurses5-dev (= 6.3+20220423-2), libncurses6 (= 6.3+20220423-2), libncursesw6 (= 6.3+20220423-2), libnettle8 (= 3.8.1-2), libnghttp2-14 (= 1.51.0-1), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libp11-kit0 (= 0.24.1-1ubuntu2), libpackage-deprecationmanager-perl (= 0.17-2), libpackage-stash-perl (= 0.40-1), libpackage-stash-xs-perl (= 0.30-1build1), libpam-modules (= 1.5.2-5ubuntu1), libpam-modules-bin (= 1.5.2-5ubuntu1), libpam-runtime (= 1.5.2-5ubuntu1), libpam0g (= 1.5.2-5ubuntu1), libpango-1.0-0 (= 1.50.12+ds-1), libpangocairo-1.0-0 (= 1.50.12+ds-1), libpangoft2-1.0-0 (= 1.50.12+ds-1), libpaper-utils (= 1.1.28build2), libpaper1 (= 1.1.28build2), libparams-classify-perl (= 0.015-2build2), libparams-util-perl (= 1.102-2), libpcre16-3 (= 2:8.39-14), libpcre2-16-0 (= 10.40-1ubuntu1), libpcre2-32-0 (= 10.40-1ubuntu1), libpcre2-8-0 (= 10.40-1ubuntu1), libpcre2-dev (= 10.40-1ubuntu1), libpcre2-posix3 (= 10.40-1ubuntu1), libpcre3 (= 2:8.39-14), libpcre3-dev (= 2:8.39-14), libpcre32-3 (= 2:8.39-14), libpcrecpp0v5 (= 2:8.39-14), libperl5.36 (= 5.36.0-6), libpipeline1 (= 1.5.7-1), libpixman-1-0 (= 0.42.2-1), libpkgconf3 (= 1.8.0-12), libpng-dev (= 1.6.39-2), libpng16-16 (= 1.6.39-2), libpsl5 (= 0.21.0-1.2build2), libreadline-dev (= 8.2-1.2), libreadline8 (= 8.2-1.2), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build4), libsasl2-2 (= 2.1.28+dfsg-6ubuntu3), libsasl2-modules-db (= 2.1.28+dfsg-6ubuntu3), libseccomp2 (= 2.5.4-1ubuntu2), libselinux1 (= 3.4-1build1), libsm6 (= 2:1.2.3-1build2), libsmartcols1 (= 2.38.1-4ubuntu1), libssh-4 (= 0.10.4-2), libssl3 (= 3.0.5-2ubuntu2), libstdc++-12-dev (= 12.2.0-10ubuntu1), libstdc++6 (= 12.2.0-10ubuntu1), libsub-exporter-perl (= 0.988-1), libsub-exporter-progressive-perl (= 0.001013-3), libsub-identify-perl (= 0.14-3), libsub-install-perl (= 0.928-3), libsub-name-perl (= 0.26-2build1), libsub-override-perl (= 0.09-4), libswitch-perl (= 2.17-3), libsystemd0 (= 252.1-1ubuntu1), libtasn1-6 (= 4.19.0-2), libtcl8.6 (= 8.6.13+dfsg-1), libthai-data (= 0.1.29-1build1), libthai0 (= 0.1.29-1build1), libtiff5 (= 4.4.0-6ubuntu1), libtimedate-perl (= 2.3300-2), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtk8.6 (= 8.6.13-1), libtool (= 2.4.7-5), libtry-tiny-perl (= 0.31-2), libtsan2 (= 12.2.0-10ubuntu1), libubsan1 (= 12.2.0-10ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 252.1-1ubuntu1), libunistring2 (= 1.0-2), liburi-perl (= 5.17-1ubuntu1), libuuid1 (= 2.38.1-4ubuntu1), libvariable-magic-perl (= 0.63-1), libwebp7 (= 1.2.2-2build1), libwww-curl-perl (= 4.17-8), libwww-curl-simple-perl (= 0.100191-3), libx11-6 (= 2:1.8.1-2), libx11-data (= 2:1.8.1-2), libxau6 (= 1:1.0.9-1build5), libxcb-render0 (= 1.15-1), libxcb-shm0 (= 1.15-1), libxcb1 (= 1.15-1), libxdmcp6 (= 1:1.1.3-0ubuntu5), libxext6 (= 2:1.3.4-1build1), libxft2 (= 2.3.6-1), libxml2 (= 2.9.14+dfsg-1.1), libxmuu1 (= 2:1.1.3-3), libxrender1 (= 1:0.9.10-1.1), libxss1 (= 1:1.2.3-1build2), libxt6 (= 1:1.2.1-1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.19.0-23.24), login (= 1:4.13+dfsg1-1ubuntu1), lto-disabled-list (= 36), m4 (= 1.4.19-1), make (= 4.3-4.1build1), man-db (= 2.11.1-1), mawk (= 1.3.4.20200120-3.1), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), openssl (= 3.0.5-2ubuntu2), patch (= 2.7.6-7build2), perl (= 5.36.0-6), perl-base (= 5.36.0-6), perl-modules-5.36 (= 5.36.0-6), pkg-config (= 1.8.0-12), pkgconf (= 1.8.0-12), pkgconf-bin (= 1.8.0-12), po-debconf (= 1.0.21+nmu1), r-base-core (= 4.2.2.20221110-1), r-base-dev (= 4.2.2.20221110-1), r-bioc-biocgenerics (= 0.44.0-2), r-bioc-genomeinfodb (= 1.34.4-1), r-bioc-genomeinfodbdata (= 1.2.9-1), r-bioc-iranges (= 2.32.0-1), r-bioc-s4vectors (= 0.36.1-1), r-bioc-xvector (= 0.38.0-1), r-bioc-zlibbioc (= 1.44.0+dfsg-1), r-cran-bitops (= 1.0-7-1), r-cran-rcurl (= 1.98-1.9+dfsg-1), readline-common (= 8.2-1.2), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.8-1ubuntu2), sensible-utils (= 0.0.17), sysvinit-utils (= 3.05-7ubuntu1), tar (= 1.34+dfsg-1.1), tzdata (= 2022g-0ubuntu2), ucf (= 3.0043), unzip (= 6.0-27ubuntu1), usrmerge (= 33ubuntu1), util-linux (= 2.38.1-4ubuntu1), util-linux-extra (= 2.38.1-4ubuntu1), x11-common (= 1:7.7+23ubuntu2), xauth (= 1:1.1.1-1), xdg-utils (= 1.1.3-4.1ubuntu3), xz-utils (= 5.4.0-0.1), zip (= 3.0-12build2), zlib1g (= 1:1.2.13.dfsg-1ubuntu3), zlib1g-dev (= 1:1.2.13.dfsg-1ubuntu3) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1671465836" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-bioc-genomicranges_1.50.2+dfsg-1_arm64.deb -------------------------------------------- new Debian package, version 2.0. size 1790602 bytes: control archive=2532 bytes. 1476 bytes, 17 lines control 5251 bytes, 55 lines md5sums Package: r-bioc-genomicranges Version: 1.50.2+dfsg-1 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian R Packages Maintainers Installed-Size: 2759 Depends: r-base-core (>= 4.2.2.20221110-1), r-api-4.0, r-api-bioc-3.16, r-bioc-biocgenerics (>= 0.37.0), r-bioc-s4vectors (>= 0.27.12), r-bioc-iranges (>= 2.31.2), r-bioc-genomeinfodb (>= 1.15.2), r-bioc-xvector (>= 0.29.2), libc6 (>= 2.17) Suggests: r-cran-matrix, r-bioc-biobase, r-bioc-annotationdbi, r-bioc-annotate, r-bioc-biostrings (>= 2.25.3), r-bioc-summarizedexperiment (>= 0.1.5), r-bioc-rsamtools (>= 1.13.53), r-bioc-genomicalignments, r-bioc-rtracklayer, r-bioc-bsgenome, r-bioc-genomicfeatures, r-bioc-gviz, r-bioc-variantannotation, r-bioc-annotationhub, r-bioc-deseq2, r-bioc-dexseq, r-bioc-edger, r-bioc-keggrest, r-cran-runit, r-cran-digest, r-cran-knitr, r-cran-rmarkdown, r-bioc-biocstyle Section: gnu-r Priority: optional Homepage: https://bioconductor.org/packages/GenomicRanges/ Description: BioConductor representation and manipulation of genomic intervals The ability to efficiently store genomic annotations and alignments is playing a central role when it comes to analyze high-throughput sequencing data (a.k.a. NGS data). 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16:03 ./usr/lib/R/site-library/GenomicRanges/unitTests/test_setops-methods.R drwxr-xr-x root/root 0 2022-12-19 16:03 ./usr/share/ drwxr-xr-x root/root 0 2022-12-19 16:03 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-12-19 16:03 ./usr/share/doc/r-bioc-genomicranges/ -rw-r--r-- root/root 810 2022-12-19 16:03 ./usr/share/doc/r-bioc-genomicranges/changelog.Debian.gz -rw-r--r-- root/root 5382 2022-12-19 16:03 ./usr/share/doc/r-bioc-genomicranges/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Type: any Build-Space: 6912 Build-Time: 30 Distribution: lunar-proposed Host Architecture: arm64 Install-Time: 26 Job: r-bioc-genomicranges_1.50.2+dfsg-1.dsc Machine Architecture: arm64 Package: r-bioc-genomicranges Package-Time: 57 Source-Version: 1.50.2+dfsg-1 Space: 6912 Status: successful Version: 1.50.2+dfsg-1 -------------------------------------------------------------------------------- Finished at 2022-12-20T06:23:45Z Build needed 00:00:57, 6912k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=lunar --arch=arm64 PACKAGEBUILD-25411816 Scanning for processes to kill in build PACKAGEBUILD-25411816