https://launchpad.net/ubuntu/+source/r-bioc-genomicranges/1.52.1+dfsg-1/+build/26922056 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-038 5.4.0-164-generic #181-Ubuntu SMP Fri Sep 1 13:42:23 UTC 2023 aarch64 Buildd toolchain package versions: launchpad-buildd_235~645~ubuntu20.04.1 python3-lpbuildd_235~645~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 27 Oct 00:39:54 ntpdate[1860]: adjust time server 10.211.37.1 offset -0.004456 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=armhf PACKAGEBUILD-26922056 --image-type chroot /home/buildd/filecache-default/59612f0fc5bae33f6226b6e60c2e882b82c04bd0 Creating target for build PACKAGEBUILD-26922056 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=armhf PACKAGEBUILD-26922056 Starting target for build PACKAGEBUILD-26922056 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=armhf PACKAGEBUILD-26922056 'deb http://ftpmaster.internal/ubuntu noble main universe' 'deb http://ftpmaster.internal/ubuntu noble-security main universe' 'deb http://ftpmaster.internal/ubuntu noble-updates main universe' 'deb http://ftpmaster.internal/ubuntu noble-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-26922056 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=armhf PACKAGEBUILD-26922056 Updating target for build PACKAGEBUILD-26922056 Get:1 http://ftpmaster.internal/ubuntu noble InRelease [213 kB] Get:2 http://ftpmaster.internal/ubuntu noble-security InRelease [74.9 kB] Get:3 http://ftpmaster.internal/ubuntu noble-updates InRelease [74.9 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease [74.9 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main armhf Packages [1334 kB] Get:6 http://ftpmaster.internal/ubuntu noble/universe armhf Packages [13.9 MB] Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main armhf Packages [182 kB] Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main Translation-en [76.5 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/universe armhf Packages [902 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe Translation-en [549 kB] Fetched 17.4 MB in 8s (2264 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt apt-utils base-passwd bash-completion debianutils diffutils grep libapt-pkg6.0 libc-bin libc-dev-bin libc6 libc6-dev liblzma5 libncursesw6 libpng16-16 libsqlite3-0 libssl3 libsystemd-shared libsystemd0 libtinfo6 libudev1 libxxhash0 libzstd1 mawk ncurses-base ncurses-bin openssl optipng systemd systemd-dev systemd-sysv xz-utils 32 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 18.1 MB of archives. After this operation, 12.3 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main armhf debianutils armhf 5.14 [88.0 kB] Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main armhf diffutils armhf 1:3.10-1 [167 kB] Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main armhf grep armhf 3.11-3 [157 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main armhf ncurses-bin armhf 6.4+20231016-1 [176 kB] Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libc6-dev armhf 2.38-3ubuntu1 [1347 kB] Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libc-dev-bin armhf 2.38-3ubuntu1 [18.9 kB] Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libc6 armhf 2.38-3ubuntu1 [2818 kB] Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main armhf base-passwd armhf 3.6.2 [51.0 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libc-bin armhf 2.38-3ubuntu1 [532 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main armhf ncurses-base all 6.4+20231016-1 [24.7 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main armhf liblzma5 armhf 5.4.4-0.1 [110 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libssl3 armhf 3.0.10-1ubuntu2.1 [1572 kB] Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libzstd1 armhf 1.5.5+dfsg2-2 [265 kB] Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-sysv armhf 253.5-1ubuntu7 [11.5 kB] Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd-dev all 253.5-1ubuntu7 [78.5 kB] Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main armhf systemd armhf 253.5-1ubuntu7 [3043 kB] Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsystemd-shared armhf 253.5-1ubuntu7 [1781 kB] Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsystemd0 armhf 253.5-1ubuntu7 [379 kB] Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libudev1 armhf 253.5-1ubuntu7 [151 kB] Get:20 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libxxhash0 armhf 0.8.2-2 [31.3 kB] Get:21 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libapt-pkg6.0 armhf 2.7.6 [960 kB] Get:22 http://ftpmaster.internal/ubuntu noble-proposed/main armhf apt armhf 2.7.6 [1360 kB] Get:23 http://ftpmaster.internal/ubuntu noble-proposed/main armhf apt-utils armhf 2.7.6 [212 kB] Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libncursesw6 armhf 6.4+20231016-1 [117 kB] Get:25 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libtinfo6 armhf 6.4+20231016-1 [91.0 kB] Get:26 http://ftpmaster.internal/ubuntu noble-proposed/main armhf mawk armhf 1.3.4.20230808-1 [114 kB] Get:27 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsqlite3-0 armhf 3.43.2-1 [587 kB] Get:28 http://ftpmaster.internal/ubuntu noble-proposed/main armhf openssl armhf 3.0.10-1ubuntu2.1 [1158 kB] Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main armhf bash-completion all 1:2.11-8 [180 kB] Get:30 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpng16-16 armhf 1.6.40-2 [166 kB] Get:31 http://ftpmaster.internal/ubuntu noble-proposed/main armhf xz-utils armhf 5.4.4-0.1 [266 kB] Get:32 http://ftpmaster.internal/ubuntu noble-proposed/main armhf optipng armhf 0.7.7-3 [82.2 kB] Preconfiguring packages ... Fetched 18.1 MB in 3s (5956 kB/s) (Reading database ... 13362 files and directories currently installed.) Preparing to unpack .../debianutils_5.14_armhf.deb ... Unpacking debianutils (5.14) over (5.8-1) ... Setting up debianutils (5.14) ... (Reading database ... 13361 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.10-1_armhf.deb ... Unpacking diffutils (1:3.10-1) over (1:3.8-4) ... Setting up diffutils (1:3.10-1) ... (Reading database ... 13361 files and directories currently installed.) Preparing to unpack .../archives/grep_3.11-3_armhf.deb ... Unpacking grep (3.11-3) over (3.11-2) ... Setting up grep (3.11-3) ... (Reading database ... 13361 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.4+20231016-1_armhf.deb ... Unpacking ncurses-bin (6.4+20231016-1) over (6.4+20230625-2) ... Setting up ncurses-bin (6.4+20231016-1) ... (Reading database ... 13361 files and directories currently installed.) 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RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-26922056 armhf noble-proposed -c chroot:build-PACKAGEBUILD-26922056 --arch=armhf --dist=noble-proposed --nolog r-bioc-genomicranges_1.52.1+dfsg-1.dsc Initiating build PACKAGEBUILD-26922056 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-164-generic #181-Ubuntu SMP Fri Sep 1 13:42:23 UTC 2023 armv7l sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-arm64-038.buildd +==============================================================================+ | r-bioc-genomicranges 1.52.1+dfsg-1 (armhf) Fri, 27 Oct 2023 00:40:40 +0000 | +==============================================================================+ Package: r-bioc-genomicranges Version: 1.52.1+dfsg-1 Source Version: 1.52.1+dfsg-1 Distribution: noble-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-26922056/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-genomicranges-AcFYhK/resolver-vSWpo2' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-bioc-genomicranges_1.52.1+dfsg-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/r-bioc-genomicranges-AcFYhK/r-bioc-genomicranges-1.52.1+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-genomicranges-AcFYhK' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.37.0), r-bioc-s4vectors, r-bioc-iranges (>= 2.31.2), r-bioc-genomeinfodb, r-bioc-xvector, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.37.0), r-bioc-s4vectors, r-bioc-iranges (>= 2.31.2), r-bioc-genomeinfodb, r-bioc-xvector, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [436 B] Get:5 copy:/<>/apt_archive ./ Packages [519 B] Fetched 1912 B in 0s (54.4 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils bash-completion debconf-i18n krb5-locales libgpg-error-l10n libgpm2 liblocale-gettext-perl libnss-nis libnss-nisplus libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev dctrl-tools debhelper debugedit dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-noto-core fonts-noto-mono gettext gettext-base gfortran gfortran-13 groff-base icu-devtools intltool-debian libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libclone-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdw1 libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-13-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu72 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libldap2 liblerc4 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses6 libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpsl5 libreadline-dev librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff6 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db pkg-config pkgconf pkgconf-bin po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-iranges r-bioc-s4vectors r-bioc-xvector r-bioc-zlibbioc r-cran-bitops r-cran-rcurl ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc debtags dh-make postgresql-client-common gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc gfortran-13-doc libcoarrays-dev groff liblapack-doc low-memory-monitor libio-compress-brotli-perl icu-doc liblzma-doc ncurses-doc libscalar-number-perl readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk libbusiness-isbn-perl libregexp-ipv6-perl libwww-perl libcurl4-gnutls-dev m4-doc apparmor less www-browser libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo r-bioc-biobase r-bioc-genomicranges r-bioc-delayedarray r-bioc-biostrings r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-runit r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-bsgenome r-bioc-biocstyle r-cran-knitr r-bioc-summarizedexperiment r-cran-matrix r-bioc-shortread r-bioc-graph r-cran-data.table r-cran-xml Recommended packages: devscripts cme git-buildpackage curl | wget | lynx bzip2-doc libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libldap-common libdevel-partialdump-perl libpng-tools publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl r-recommended r-doc-html libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev dctrl-tools debhelper debugedit dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-noto-core fonts-noto-mono gettext gettext-base gfortran gfortran-13 groff-base icu-devtools intltool-debian libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libclone-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdw1 libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-13-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu72 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libldap2 liblerc4 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses6 libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpsl5 libreadline-dev librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff6 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db pkg-config pkgconf pkgconf-bin po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-iranges r-bioc-s4vectors r-bioc-xvector r-bioc-zlibbioc r-cran-bitops r-cran-rcurl sbuild-build-depends-main-dummy ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 179 newly installed, 0 to remove and 0 not upgraded. Need to get 120 MB of archives. After this operation, 303 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [732 B] Get:2 http://ftpmaster.internal/ubuntu noble/main armhf libbsd0 armhf 0.11.7-4 [36.9 kB] Get:3 http://ftpmaster.internal/ubuntu noble/main armhf libelf1 armhf 0.189-4 [48.7 kB] Get:4 http://ftpmaster.internal/ubuntu noble/main armhf libexpat1 armhf 2.5.0-2 [63.7 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main armhf libfribidi0 armhf 1.0.13-3 [24.0 kB] Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libglib2.0-0 armhf 2.78.1-1 [1395 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main armhf libicu72 armhf 72.1-3ubuntu3 [10.5 MB] Get:8 http://ftpmaster.internal/ubuntu noble/main armhf libxml2 armhf 2.9.14+dfsg-1.3 [591 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main armhf ucf all 3.0043+nmu1 [56.5 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmagic-mgc armhf 1:5.45-2 [307 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libmagic1 armhf 1:5.45-2 [80.9 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main armhf file armhf 1:5.45-2 [21.1 kB] Get:13 http://ftpmaster.internal/ubuntu noble/main armhf gettext-base armhf 0.21-13 [37.5 kB] Get:14 http://ftpmaster.internal/ubuntu noble/main armhf libuchardet0 armhf 0.0.7-1build2 [75.7 kB] Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main armhf groff-base armhf 1.23.0-3 [948 kB] Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libncurses6 armhf 6.4+20231016-1 [87.8 kB] Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libnghttp2-14 armhf 1.57.0-1 [67.8 kB] Get:18 http://ftpmaster.internal/ubuntu noble/main armhf libpipeline1 armhf 1.5.7-1 [26.2 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main armhf libpsl5 armhf 0.21.2-1 [57.6 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main armhf libxau6 armhf 1:1.0.9-1build5 [6622 B] Get:21 http://ftpmaster.internal/ubuntu noble/main armhf libxdmcp6 armhf 1:1.1.3-0ubuntu5 [9452 B] Get:22 http://ftpmaster.internal/ubuntu noble/main armhf libxcb1 armhf 1.15-1 [45.4 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main armhf libx11-data all 2:1.8.6-1ubuntu1 [116 kB] Get:24 http://ftpmaster.internal/ubuntu noble/main armhf libx11-6 armhf 2:1.8.6-1ubuntu1 [586 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main armhf libxext6 armhf 2:1.3.4-1build1 [26.4 kB] Get:26 http://ftpmaster.internal/ubuntu noble/main armhf libxmuu1 armhf 2:1.1.3-3 [9288 B] Get:27 http://ftpmaster.internal/ubuntu noble-proposed/main armhf man-db armhf 2.12.0-1 [1195 kB] Get:28 http://ftpmaster.internal/ubuntu noble/main armhf xauth armhf 1:1.1.2-1 [22.9 kB] Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main armhf m4 armhf 1.4.19-4 [235 kB] Get:30 http://ftpmaster.internal/ubuntu noble/main armhf autoconf all 2.71-3 [339 kB] Get:31 http://ftpmaster.internal/ubuntu noble/main armhf autotools-dev all 20220109.1 [44.9 kB] Get:32 http://ftpmaster.internal/ubuntu noble/main armhf automake all 1:1.16.5-1.3 [558 kB] Get:33 http://ftpmaster.internal/ubuntu noble/main armhf autopoint all 0.21-13 [422 kB] Get:34 http://ftpmaster.internal/ubuntu noble/main armhf dctrl-tools armhf 2.24-3build2 [57.2 kB] Get:35 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libdebhelper-perl all 13.11.7ubuntu1 [85.8 kB] Get:36 http://ftpmaster.internal/ubuntu noble/main armhf libtool all 2.4.7-7 [166 kB] Get:37 http://ftpmaster.internal/ubuntu noble/main armhf dh-autoreconf all 20 [16.1 kB] Get:38 http://ftpmaster.internal/ubuntu noble/main armhf libarchive-zip-perl all 1.68-1 [90.2 kB] Get:39 http://ftpmaster.internal/ubuntu noble/main armhf libsub-override-perl all 0.09-4 [8706 B] Get:40 http://ftpmaster.internal/ubuntu noble/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main armhf dh-strip-nondeterminism all 1.13.1-1 [5362 B] Get:42 http://ftpmaster.internal/ubuntu noble/main armhf libdw1 armhf 0.189-4 [233 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main armhf debugedit armhf 1:5.0-5 [42.8 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main armhf dwz armhf 0.15-1 [109 kB] Get:45 http://ftpmaster.internal/ubuntu noble/main armhf gettext armhf 0.21-13 [801 kB] Get:46 http://ftpmaster.internal/ubuntu noble/main armhf intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:47 http://ftpmaster.internal/ubuntu noble/main armhf po-debconf all 1.0.21+nmu1 [233 kB] Get:48 http://ftpmaster.internal/ubuntu noble-proposed/main armhf debhelper all 13.11.7ubuntu1 [940 kB] Get:49 http://ftpmaster.internal/ubuntu noble/main armhf zip armhf 3.0-13 [162 kB] Get:50 http://ftpmaster.internal/ubuntu noble/main armhf unzip armhf 6.0-28ubuntu1 [162 kB] Get:51 http://ftpmaster.internal/ubuntu noble/main armhf libpaper1 armhf 1.1.29 [12.5 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main armhf libpaper-utils armhf 1.1.29 [8170 B] Get:53 http://ftpmaster.internal/ubuntu noble/main armhf xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] Get:54 http://ftpmaster.internal/ubuntu noble/main armhf libblas3 armhf 3.11.0-2build1 [123 kB] Get:55 http://ftpmaster.internal/ubuntu noble/main armhf libbrotli1 armhf 1.0.9-2build8 [296 kB] Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libfreetype6 armhf 2.13.2+dfsg-1 [331 kB] Get:57 http://ftpmaster.internal/ubuntu noble/main armhf fonts-noto-mono all 20201225-2 [435 kB] Get:58 http://ftpmaster.internal/ubuntu noble/main armhf fonts-noto-core all 20201225-2 [13.3 MB] Get:59 http://ftpmaster.internal/ubuntu noble/main armhf fontconfig-config armhf 2.14.2-4ubuntu1 [35.8 kB] Get:60 http://ftpmaster.internal/ubuntu noble/main armhf libfontconfig1 armhf 2.14.2-4ubuntu1 [112 kB] Get:61 http://ftpmaster.internal/ubuntu noble/main armhf libpixman-1-0 armhf 0.42.2-1 [184 kB] Get:62 http://ftpmaster.internal/ubuntu noble/main armhf libxcb-render0 armhf 1.15-1 [15.2 kB] Get:63 http://ftpmaster.internal/ubuntu noble/main armhf libxcb-shm0 armhf 1.15-1 [5852 B] Get:64 http://ftpmaster.internal/ubuntu noble/main armhf libxrender1 armhf 1:0.9.10-1.1 [16.5 kB] Get:65 http://ftpmaster.internal/ubuntu noble/main armhf libcairo2 armhf 1.18.0-1 [481 kB] Get:66 http://ftpmaster.internal/ubuntu noble/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-3 [18.9 kB] Get:67 http://ftpmaster.internal/ubuntu noble/main armhf libsasl2-2 armhf 2.1.28+dfsg1-3 [49.6 kB] Get:68 http://ftpmaster.internal/ubuntu noble/main armhf libldap2 armhf 2.6.6+dfsg-1~exp1ubuntu1 [170 kB] Get:69 http://ftpmaster.internal/ubuntu noble/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2build4 [52.8 kB] Get:70 http://ftpmaster.internal/ubuntu noble/main armhf libssh-4 armhf 0.10.5-3ubuntu1 [166 kB] Get:71 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcurl4 armhf 8.2.1-1ubuntu3.1 [280 kB] Get:72 http://ftpmaster.internal/ubuntu noble/main armhf libjpeg-turbo8 armhf 2.1.5-2ubuntu1 [123 kB] Get:73 http://ftpmaster.internal/ubuntu noble/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] Get:74 http://ftpmaster.internal/ubuntu noble/main armhf libgfortran5 armhf 13.2.0-4ubuntu3 [300 kB] Get:75 http://ftpmaster.internal/ubuntu noble/main armhf liblapack3 armhf 3.11.0-2build1 [1988 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main armhf fontconfig armhf 2.14.2-4ubuntu1 [189 kB] Get:77 http://ftpmaster.internal/ubuntu noble/main armhf libgraphite2-3 armhf 1.3.14-1build2 [65.2 kB] Get:78 http://ftpmaster.internal/ubuntu noble/main armhf libharfbuzz0b armhf 8.0.1-1 [433 kB] Get:79 http://ftpmaster.internal/ubuntu noble/main armhf libthai-data all 0.1.29-1build1 [162 kB] Get:80 http://ftpmaster.internal/ubuntu noble/main armhf libdatrie1 armhf 0.2.13-2 [16.8 kB] Get:81 http://ftpmaster.internal/ubuntu noble/main armhf libthai0 armhf 0.1.29-1build1 [15.8 kB] Get:82 http://ftpmaster.internal/ubuntu noble/main armhf libpango-1.0-0 armhf 1.51.0+ds-2 [206 kB] Get:83 http://ftpmaster.internal/ubuntu noble/main armhf libpangoft2-1.0-0 armhf 1.51.0+ds-2 [36.1 kB] Get:84 http://ftpmaster.internal/ubuntu noble/main armhf libpangocairo-1.0-0 armhf 1.51.0+ds-2 [25.3 kB] Get:85 http://ftpmaster.internal/ubuntu noble/main armhf libtcl8.6 armhf 8.6.13+dfsg-2 [902 kB] Get:86 http://ftpmaster.internal/ubuntu noble/main armhf libdeflate0 armhf 1.18-1 [40.7 kB] Get:87 http://ftpmaster.internal/ubuntu noble/main armhf libjbig0 armhf 2.1-6.1ubuntu1 [24.9 kB] Get:88 http://ftpmaster.internal/ubuntu noble/main armhf liblerc4 armhf 4.0.0+ds-2ubuntu2 [151 kB] Get:89 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libsharpyuv0 armhf 1.3.2-0.3 [13.3 kB] Get:90 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libwebp7 armhf 1.3.2-0.3 [183 kB] Get:91 http://ftpmaster.internal/ubuntu noble/main armhf libtiff6 armhf 4.5.1+git230720-1ubuntu1 [177 kB] Get:92 http://ftpmaster.internal/ubuntu noble/main armhf libxft2 armhf 2.3.6-1 [36.8 kB] Get:93 http://ftpmaster.internal/ubuntu noble/main armhf x11-common all 1:7.7+23ubuntu2 [23.4 kB] Get:94 http://ftpmaster.internal/ubuntu noble/main armhf libxss1 armhf 1:1.2.3-1build2 [7580 B] Get:95 http://ftpmaster.internal/ubuntu noble/main armhf libtk8.6 armhf 8.6.13-2 [680 kB] Get:96 http://ftpmaster.internal/ubuntu noble/main armhf libice6 armhf 2:1.0.10-1build2 [36.4 kB] Get:97 http://ftpmaster.internal/ubuntu noble/main armhf libsm6 armhf 2:1.2.3-1build2 [15.1 kB] Get:98 http://ftpmaster.internal/ubuntu noble/main armhf libxt6 armhf 1:1.2.1-1.1 [142 kB] Get:99 http://ftpmaster.internal/ubuntu noble/universe armhf r-base-core armhf 4.3.1-4 [26.6 MB] Get:100 http://ftpmaster.internal/ubuntu noble/main armhf libgfortran-13-dev armhf 13.2.0-4ubuntu3 [359 kB] Get:101 http://ftpmaster.internal/ubuntu noble/main armhf gfortran-13 armhf 13.2.0-4ubuntu3 [8799 kB] Get:102 http://ftpmaster.internal/ubuntu noble/main armhf gfortran armhf 4:13.2.0-1ubuntu1 [1174 B] Get:103 http://ftpmaster.internal/ubuntu noble/main armhf libblas-dev armhf 3.11.0-2build1 [132 kB] Get:104 http://ftpmaster.internal/ubuntu noble/main armhf liblapack-dev armhf 3.11.0-2build1 [2059 kB] Get:105 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libncurses-dev armhf 6.4+20231016-1 [342 kB] Get:106 http://ftpmaster.internal/ubuntu noble/main armhf libreadline-dev armhf 8.2-1.3 [152 kB] Get:107 http://ftpmaster.internal/ubuntu noble/main armhf libjpeg-turbo8-dev armhf 2.1.5-2ubuntu1 [263 kB] Get:108 http://ftpmaster.internal/ubuntu noble/main armhf libjpeg8-dev armhf 8c-2ubuntu11 [1484 B] Get:109 http://ftpmaster.internal/ubuntu noble/main armhf libjpeg-dev armhf 8c-2ubuntu11 [1482 B] Get:110 http://ftpmaster.internal/ubuntu noble/main armhf libpcre2-16-0 armhf 10.42-4 [180 kB] Get:111 http://ftpmaster.internal/ubuntu noble/main armhf libpcre2-32-0 armhf 10.42-4 [170 kB] Get:112 http://ftpmaster.internal/ubuntu noble/main armhf libpcre2-posix3 armhf 10.42-4 [6094 B] Get:113 http://ftpmaster.internal/ubuntu noble/main armhf libpcre2-dev armhf 10.42-4 [664 kB] Get:114 http://ftpmaster.internal/ubuntu noble/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1ubuntu5 [880 kB] Get:115 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libpng-dev armhf 1.6.40-2 [248 kB] Get:116 http://ftpmaster.internal/ubuntu noble/main armhf libbz2-dev armhf 1.0.8-5build1 [29.8 kB] Get:117 http://ftpmaster.internal/ubuntu noble-proposed/main armhf liblzma-dev armhf 5.4.4-0.1 [166 kB] Get:118 http://ftpmaster.internal/ubuntu noble/main armhf icu-devtools armhf 72.1-3ubuntu3 [199 kB] Get:119 http://ftpmaster.internal/ubuntu noble/main armhf libicu-dev armhf 72.1-3ubuntu3 [11.6 MB] Get:120 http://ftpmaster.internal/ubuntu noble/main armhf libpkgconf3 armhf 1.8.1-2 [26.3 kB] Get:121 http://ftpmaster.internal/ubuntu noble/main armhf pkgconf-bin armhf 1.8.1-2 [20.6 kB] Get:122 http://ftpmaster.internal/ubuntu noble/main armhf pkgconf armhf 1.8.1-2 [16.7 kB] Get:123 http://ftpmaster.internal/ubuntu noble/main armhf pkg-config armhf 1.8.1-2 [7170 B] Get:124 http://ftpmaster.internal/ubuntu noble/universe armhf r-base-dev all 4.3.1-4 [4332 B] Get:125 http://ftpmaster.internal/ubuntu noble/main armhf libfile-which-perl all 1.27-2 [12.5 kB] Get:126 http://ftpmaster.internal/ubuntu noble/universe armhf libswitch-perl all 2.17-3 [18.9 kB] Get:127 http://ftpmaster.internal/ubuntu noble/main armhf libclone-perl armhf 0.46-1 [10.0 kB] Get:128 http://ftpmaster.internal/ubuntu noble/main armhf libencode-locale-perl all 1.05-3 [11.6 kB] Get:129 http://ftpmaster.internal/ubuntu noble/main armhf libtimedate-perl all 2.3300-2 [34.0 kB] Get:130 http://ftpmaster.internal/ubuntu noble/main armhf libhttp-date-perl all 6.05-2 [9946 B] Get:131 http://ftpmaster.internal/ubuntu noble/main armhf libio-html-perl all 1.004-3 [15.9 kB] Get:132 http://ftpmaster.internal/ubuntu noble/main armhf liblwp-mediatypes-perl all 6.04-2 [20.1 kB] Get:133 http://ftpmaster.internal/ubuntu noble-proposed/main armhf liburi-perl all 5.21-1 [85.4 kB] Get:134 http://ftpmaster.internal/ubuntu noble/main armhf libhttp-message-perl all 6.44-2ubuntu1 [78.0 kB] Get:135 http://ftpmaster.internal/ubuntu noble/main armhf libparams-util-perl armhf 1.102-2 [20.5 kB] Get:136 http://ftpmaster.internal/ubuntu noble/main armhf libsub-install-perl all 0.929-1 [9764 B] Get:137 http://ftpmaster.internal/ubuntu noble/main armhf libdata-optlist-perl all 0.114-1 [9708 B] Get:138 http://ftpmaster.internal/ubuntu noble/main armhf libb-hooks-op-check-perl armhf 0.22-2build1 [9160 B] Get:139 http://ftpmaster.internal/ubuntu noble/main armhf libdynaloader-functions-perl all 0.003-3 [12.1 kB] Get:140 http://ftpmaster.internal/ubuntu noble/main armhf libdevel-callchecker-perl armhf 0.008-2 [13.6 kB] Get:141 http://ftpmaster.internal/ubuntu noble/main armhf libparams-classify-perl armhf 0.015-2build2 [19.4 kB] Get:142 http://ftpmaster.internal/ubuntu noble/main armhf libmodule-runtime-perl all 0.016-2 [16.4 kB] Get:143 http://ftpmaster.internal/ubuntu noble/main armhf libtry-tiny-perl all 0.31-2 [20.8 kB] Get:144 http://ftpmaster.internal/ubuntu noble/main armhf libmodule-implementation-perl all 0.09-2 [12.0 kB] Get:145 http://ftpmaster.internal/ubuntu noble/main armhf libpackage-stash-perl all 0.40-1 [19.5 kB] Get:146 http://ftpmaster.internal/ubuntu noble/universe armhf libclass-load-perl all 0.25-2 [12.7 kB] Get:147 http://ftpmaster.internal/ubuntu noble/universe armhf libclass-load-xs-perl armhf 0.10-2build1 [13.1 kB] Get:148 http://ftpmaster.internal/ubuntu noble/main armhf libsub-exporter-progressive-perl all 0.001013-3 [6718 B] Get:149 http://ftpmaster.internal/ubuntu noble/universe armhf libdevel-globaldestruction-perl all 0.14-4 [6114 B] Get:150 http://ftpmaster.internal/ubuntu noble/universe armhf libalgorithm-c3-perl all 0.11-2 [10.2 kB] Get:151 http://ftpmaster.internal/ubuntu noble/universe armhf libclass-c3-perl all 0.35-2 [18.4 kB] Get:152 http://ftpmaster.internal/ubuntu noble/universe armhf libmro-compat-perl all 0.15-2 [10.1 kB] Get:153 http://ftpmaster.internal/ubuntu noble/universe armhf libdevel-overloadinfo-perl all 0.007-1 [7422 B] Get:154 http://ftpmaster.internal/ubuntu noble/main armhf libdevel-stacktrace-perl all 2.0400-2 [22.2 kB] Get:155 http://ftpmaster.internal/ubuntu noble/main armhf libsub-exporter-perl all 0.990-1 [49.0 kB] Get:156 http://ftpmaster.internal/ubuntu noble/universe armhf libeval-closure-perl all 0.14-3 [10.1 kB] Get:157 http://ftpmaster.internal/ubuntu noble/universe armhf libdist-checkconflicts-perl all 0.11-2 [9942 B] Get:158 http://ftpmaster.internal/ubuntu noble/universe armhf libmodule-runtime-conflicts-perl all 0.003-2 [6956 B] Get:159 http://ftpmaster.internal/ubuntu noble/universe armhf libpackage-deprecationmanager-perl all 0.18-1 [16.7 kB] Get:160 http://ftpmaster.internal/ubuntu noble/main armhf libpackage-stash-xs-perl armhf 0.30-1build1 [17.2 kB] Get:161 http://ftpmaster.internal/ubuntu noble/universe armhf libmoose-perl armhf 2.2206-1 [748 kB] Get:162 http://ftpmaster.internal/ubuntu noble/main armhf libvariable-magic-perl armhf 0.63-1 [32.2 kB] Get:163 http://ftpmaster.internal/ubuntu noble/main armhf libb-hooks-endofscope-perl all 0.26-1 [17.8 kB] Get:164 http://ftpmaster.internal/ubuntu noble/main armhf libsub-identify-perl armhf 0.14-3 [9386 B] Get:165 http://ftpmaster.internal/ubuntu noble/main armhf libsub-name-perl armhf 0.27-1 [10.3 kB] Get:166 http://ftpmaster.internal/ubuntu noble/main armhf libnamespace-clean-perl all 0.27-2 [14.0 kB] Get:167 http://ftpmaster.internal/ubuntu noble-proposed/main armhf libcurl3-gnutls armhf 8.2.1-1ubuntu3.1 [275 kB] Get:168 http://ftpmaster.internal/ubuntu noble/universe armhf libwww-curl-perl armhf 4.17-10 [54.7 kB] Get:169 http://ftpmaster.internal/ubuntu noble/universe armhf libwww-curl-simple-perl all 0.100191-3 [11.2 kB] Get:170 http://ftpmaster.internal/ubuntu noble/universe armhf dh-r all 20230707ubuntu1 [39.1 kB] Get:171 http://ftpmaster.internal/ubuntu noble/universe armhf r-bioc-biocgenerics all 0.46.0-1 [591 kB] Get:172 http://ftpmaster.internal/ubuntu noble/universe armhf r-bioc-s4vectors armhf 0.38.1+dfsg-1 [2045 kB] Get:173 http://ftpmaster.internal/ubuntu noble/universe armhf r-bioc-iranges armhf 2.34.1-1 [2244 kB] Get:174 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-bitops armhf 1.0-7-1 [29.4 kB] Get:175 http://ftpmaster.internal/ubuntu noble/universe armhf r-cran-rcurl armhf 1.98-1.12+dfsg-1 [790 kB] Get:176 http://ftpmaster.internal/ubuntu noble/universe armhf r-bioc-genomeinfodbdata all 1.2.10-1 [12.0 MB] Get:177 http://ftpmaster.internal/ubuntu noble/universe armhf r-bioc-genomeinfodb all 1.36.1+dfsg-1 [3876 kB] Get:178 http://ftpmaster.internal/ubuntu noble/universe armhf r-bioc-zlibbioc all 1.46.0+dfsg-1 [9592 B] Get:179 http://ftpmaster.internal/ubuntu noble/universe armhf r-bioc-xvector armhf 0.40.0-1 [616 kB] Preconfiguring packages ... 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Selecting previously unselected package r-bioc-iranges. Preparing to unpack .../171-r-bioc-iranges_2.34.1-1_armhf.deb ... Unpacking r-bioc-iranges (2.34.1-1) ... Selecting previously unselected package r-cran-bitops. Preparing to unpack .../172-r-cran-bitops_1.0-7-1_armhf.deb ... Unpacking r-cran-bitops (1.0-7-1) ... Selecting previously unselected package r-cran-rcurl. Preparing to unpack .../173-r-cran-rcurl_1.98-1.12+dfsg-1_armhf.deb ... Unpacking r-cran-rcurl (1.98-1.12+dfsg-1) ... Selecting previously unselected package r-bioc-genomeinfodbdata. Preparing to unpack .../174-r-bioc-genomeinfodbdata_1.2.10-1_all.deb ... Unpacking r-bioc-genomeinfodbdata (1.2.10-1) ... Selecting previously unselected package r-bioc-genomeinfodb. Preparing to unpack .../175-r-bioc-genomeinfodb_1.36.1+dfsg-1_all.deb ... Unpacking r-bioc-genomeinfodb (1.36.1+dfsg-1) ... Selecting previously unselected package r-bioc-zlibbioc. Preparing to unpack .../176-r-bioc-zlibbioc_1.46.0+dfsg-1_all.deb ... Unpacking r-bioc-zlibbioc (1.46.0+dfsg-1) ... Selecting previously unselected package r-bioc-xvector. Preparing to unpack .../177-r-bioc-xvector_0.40.0-1_armhf.deb ... Unpacking r-bioc-xvector (0.40.0-1) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../178-sbuild-build-depends-main-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libexpat1:armhf (2.5.0-2) ... Setting up libpipeline1:armhf (1.5.7-1) ... Setting up libgraphite2-3:armhf (1.3.14-1build2) ... Setting up libpixman-1-0:armhf (0.42.2-1) ... Setting up libsharpyuv0:armhf (1.3.2-0.3) ... Setting up libfile-which-perl (1.27-2) ... Setting up libxau6:armhf (1:1.0.9-1build5) ... Setting up libpsl5:armhf (0.21.2-1) ... Setting up libicu72:armhf (72.1-3ubuntu3) ... Setting up liblerc4:armhf (4.0.0+ds-2ubuntu2) ... Setting up fonts-noto-mono (20201225-2) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libdatrie1:armhf (0.2.13-2) ... Setting up libmagic-mgc (1:5.45-2) ... Setting up libclone-perl:armhf (0.46-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libsub-identify-perl (0.14-3) ... Setting up libglib2.0-0:armhf (2.78.1-1) ... No schema files found: doing nothing. Setting up unzip (6.0-28ubuntu1) ... Setting up libdebhelper-perl (13.11.7ubuntu1) ... Setting up libbrotli1:armhf (1.0.9-2build8) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up x11-common (1:7.7+23ubuntu2) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libtry-tiny-perl (0.31-2) ... Setting up libnghttp2-14:armhf (1.57.0-1) ... Setting up libmagic1:armhf (1:5.45-2) ... Setting up libdeflate0:armhf (1.18-1) ... Setting up gettext-base (0.21-13) ... Setting up m4 (1.4.19-4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up file (1:5.45-2) ... Setting up libjbig0:armhf (2.1-6.1ubuntu1) ... Setting up libpcre2-16-0:armhf (10.42-4) ... Setting up libsub-install-perl (0.929-1) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-3) ... Setting up zip (3.0-13) ... Setting up libpackage-stash-xs-perl:armhf (0.30-1build1) ... Setting up autotools-dev (20220109.1) ... Setting up libpcre2-32-0:armhf (10.42-4) ... Setting up libblas3:armhf (3.11.0-2build1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libpkgconf3:armhf (1.8.1-2) ... Setting up libalgorithm-c3-perl (0.11-2) ... Setting up libswitch-perl (2.17-3) ... Setting up libfreetype6:armhf (2.13.2+dfsg-1) ... Setting up libx11-data (2:1.8.6-1ubuntu1) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2build4) ... Setting up libncurses6:armhf (6.4+20231016-1) ... Setting up libfribidi0:armhf (1.0.13-3) ... Setting up libvariable-magic-perl (0.63-1) ... Setting up libio-html-perl (1.004-3) ... Setting up libtcl8.6:armhf (8.6.13+dfsg-2) ... Setting up autopoint (0.21-13) ... Setting up libb-hooks-op-check-perl:armhf (0.22-2build1) ... Setting up icu-devtools (72.1-3ubuntu3) ... Setting up ucf (3.0043+nmu1) ... Setting up pkgconf-bin (1.8.1-2) ... Setting up libjpeg-turbo8:armhf (2.1.5-2ubuntu1) ... Setting up libparams-util-perl (1.102-2) ... Setting up libsasl2-2:armhf (2.1.28+dfsg1-3) ... Setting up libssh-4:armhf (0.10.5-3ubuntu1) ... Setting up libgfortran5:armhf (13.2.0-4ubuntu3) ... Setting up autoconf (2.71-3) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libwebp7:armhf (1.3.2-0.3) ... Setting up libtimedate-perl (2.3300-2) ... Setting up liblzma-dev:armhf (5.4.4-0.1) ... Setting up libsub-name-perl:armhf (0.27-1) ... Setting up zlib1g-dev:armhf (1:1.2.13.dfsg-1ubuntu5) ... Setting up libpcre2-posix3:armhf (10.42-4) ... Setting up libuchardet0:armhf (0.0.7-1build2) ... Setting up libsub-override-perl (0.09-4) ... Setting up libharfbuzz0b:armhf (8.0.1-1) ... Setting up libthai-data (0.1.29-1build1) ... Setting up libdevel-globaldestruction-perl (0.14-4) ... Setting up libdevel-stacktrace-perl (2.0400-2) ... Setting up libgfortran-13-dev:armhf (13.2.0-4ubuntu3) ... Setting up libbsd0:armhf (0.11.7-4) ... Setting up libelf1:armhf (0.189-4) ... Setting up libicu-dev:armhf (72.1-3ubuntu3) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3) ... Setting up fonts-noto-core (20201225-2) ... Setting up xdg-utils (1.1.3-4.1ubuntu3) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libldap2:armhf (2.6.6+dfsg-1~exp1ubuntu1) ... Setting up liburi-perl (5.21-1) ... Setting up libblas-dev:armhf (3.11.0-2build1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode Setting up dctrl-tools (2.24-3build2) ... Setting up libbz2-dev:armhf (1.0.8-5build1) ... Setting up libjpeg8:armhf (8c-2ubuntu11) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libpaper1:armhf (1.1.29) ... Creating config file /etc/papersize with new version Setting up libice6:armhf (2:1.0.10-1build2) ... Setting up libhttp-date-perl (6.05-2) ... Setting up libdw1:armhf (0.189-4) ... Setting up libjpeg-turbo8-dev:armhf (2.1.5-2ubuntu1) ... Setting up libxdmcp6:armhf (1:1.1.3-0ubuntu5) ... Setting up liblapack3:armhf (3.11.0-2build1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libncurses-dev:armhf (6.4+20231016-1) ... Setting up libxcb1:armhf (1.15-1) ... Setting up gettext (0.21-13) ... Setting up libpcre2-dev:armhf (10.42-4) ... Setting up libtool (2.4.7-7) ... Setting up libxcb-render0:armhf (1.15-1) ... Setting up fontconfig-config (2.14.2-4ubuntu1) ... Setting up libpng-dev:armhf (1.6.40-2) ... Setting up libcurl3-gnutls:armhf (8.2.1-1ubuntu3.1) ... Setting up libxcb-shm0:armhf (1.15-1) ... Setting up libpaper-utils (1.1.29) ... Setting up libclass-c3-perl (0.35-2) ... Setting up libreadline-dev:armhf (8.2-1.3) ... Setting up libdevel-callchecker-perl:armhf (0.008-2) ... Setting up pkgconf:armhf (1.8.1-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libthai0:armhf (0.1.29-1build1) ... Setting up gfortran-13 (13.2.0-4ubuntu3) ... Setting up liblapack-dev:armhf (3.11.0-2build1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode Setting up libdata-optlist-perl (0.114-1) ... Setting up pkg-config:armhf (1.8.1-2) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up libtiff6:armhf (4.5.1+git230720-1ubuntu1) ... Setting up debugedit (1:5.0-5) ... Setting up libcurl4:armhf (8.2.1-1ubuntu3.1) ... Setting up libx11-6:armhf (2:1.8.6-1ubuntu1) ... Setting up libfontconfig1:armhf (2.14.2-4ubuntu1) ... Setting up libmro-compat-perl (0.15-2) ... Setting up libjpeg8-dev:armhf (8c-2ubuntu11) ... Setting up libsm6:armhf (2:1.2.3-1build2) ... Setting up libxmuu1:armhf (2:1.1.3-3) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (6.44-2ubuntu1) ... Setting up libeval-closure-perl (0.14-3) ... Setting up fontconfig (2.14.2-4ubuntu1) ... Regenerating fonts cache... done. Setting up libxrender1:armhf (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libparams-classify-perl:armhf (0.015-2build2) ... Setting up libpango-1.0-0:armhf (1.51.0+ds-2) ... Setting up libjpeg-dev:armhf (8c-2ubuntu11) ... Setting up libxext6:armhf (2:1.3.4-1build1) ... Setting up libwww-curl-perl:armhf (4.17-10) ... Setting up man-db (2.12.0-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up gfortran (4:13.2.0-1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:armhf (1.18.0-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up libxt6:armhf (1:1.2.1-1.1) ... Setting up xauth (1:1.1.2-1) ... Setting up libxss1:armhf (1:1.2.3-1build2) ... Setting up libpangoft2-1.0-0:armhf (1.51.0+ds-2) ... Setting up libpangocairo-1.0-0:armhf (1.51.0+ds-2) ... Setting up libxft2:armhf (2.3.6-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libtk8.6:armhf (8.6.13-2) ... Setting up debhelper (13.11.7ubuntu1) ... Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up libclass-load-perl (0.25-2) ... Setting up r-base-core (4.3.1-4) ... Creating config file /etc/R/Renviron with new version Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-2build1) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up r-bioc-genomeinfodbdata (1.2.10-1) ... Setting up r-bioc-biocgenerics (0.46.0-1) ... Setting up r-base-dev (4.3.1-4) ... Setting up libmoose-perl:armhf (2.2206-1) ... Setting up r-cran-bitops (1.0-7-1) ... Setting up r-bioc-zlibbioc (1.46.0+dfsg-1) ... Setting up r-bioc-s4vectors (0.38.1+dfsg-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-bioc-iranges (2.34.1-1) ... Setting up r-cran-rcurl (1.98-1.12+dfsg-1) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up r-bioc-genomeinfodb (1.36.1+dfsg-1) ... Setting up r-bioc-xvector (0.40.0-1) ... Setting up dh-r (20230707ubuntu1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.38-3ubuntu1) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-164-generic #181-Ubuntu SMP Fri Sep 1 13:42:23 UTC 2023 arm64 (armv7l) Toolchain package versions: binutils_2.41-5ubuntu1 dpkg-dev_1.22.0ubuntu1 g++-13_13.2.0-4ubuntu3 gcc-13_13.2.0-4ubuntu3 libc6-dev_2.38-3ubuntu1 libstdc++-13-dev_13.2.0-4ubuntu3 libstdc++6_13.2.0-4ubuntu3 linux-libc-dev_6.5.0-9.9 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 apt_2.7.6 apt-utils_2.7.6 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13 autotools-dev_20220109.1 base-files_13ubuntu3 base-passwd_3.6.2 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r-bioc-s4vectors, r-bioc-iranges (>= 2.31.2), r-bioc-genomeinfodb, r-bioc-xvector Package-List: r-bioc-genomicranges deb gnu-r optional arch=any Checksums-Sha1: 23359da02fc2fdb93ad69ebb2b97f37f2f676b48 805444 r-bioc-genomicranges_1.52.1+dfsg.orig.tar.xz c55fa279708841098af848863f5e5c6b84c61e51 5980 r-bioc-genomicranges_1.52.1+dfsg-1.debian.tar.xz Checksums-Sha256: 6b0cb1d1db0ed2efbfa7b5bdb7a55143098419e5f4e9405faad56257f0b5277c 805444 r-bioc-genomicranges_1.52.1+dfsg.orig.tar.xz 2558d5aafa2851c4e4beea9bf9d9ce46eba6a37366109f622b8c0439ad43db2f 5980 r-bioc-genomicranges_1.52.1+dfsg-1.debian.tar.xz Files: 577919744e61e1e18de5256e4329dd6a 805444 r-bioc-genomicranges_1.52.1+dfsg.orig.tar.xz 3cc8fff6652b9d496371440142be78b6 5980 r-bioc-genomicranges_1.52.1+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmUpRwwRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHO5g/9EZwfo8xTRKIosVmvtEPkNnUtxPxyBIqb 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signature found dpkg-source: info: extracting r-bioc-genomicranges in /<> dpkg-source: info: unpacking r-bioc-genomicranges_1.52.1+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-genomicranges_1.52.1+dfsg-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-26922056 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-26922056 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-26922056 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package r-bioc-genomicranges dpkg-buildpackage: info: source version 1.52.1+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary-arch dh binary-arch --buildsystem R dh_update_autotools_config -a -O--buildsystem=R dh_autoreconf -a -O--buildsystem=R dh_auto_configure -a -O--buildsystem=R dh_auto_build -a -O--buildsystem=R dh_auto_test -a -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=R dh_prep -a -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-genomicranges/ -a -O--buildsystem=R I: R Package: GenomicRanges Version: 1.52.1 I: Building using R version 4.3.1-4 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Fri, 13 Oct 2023 15:27:21 +0200 mkdir -p /<>/r-bioc-genomicranges-1.52.1\+dfsg/debian/r-bioc-genomicranges/usr/lib/R/site-library R CMD INSTALL -l /<>/r-bioc-genomicranges-1.52.1\+dfsg/debian/r-bioc-genomicranges/usr/lib/R/site-library --clean . "--built-timestamp='Fri, 13 Oct 2023 15:27:21 +0200'" * installing *source* package ‘GenomicRanges’ ... ** using staged installation ** libs using C compiler: ‘gcc (Ubuntu 13.2.0-4ubuntu3) 13.2.0’ make[1]: Entering directory '/<>/src' gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-E5Ax2d/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/build/r-base-E5Ax2d/r-base-4.3.1=/usr/src/r-base-4.3.1-4 -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c IRanges_stubs.c -o IRanges_stubs.o gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-E5Ax2d/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/build/r-base-E5Ax2d/r-base-4.3.1=/usr/src/r-base-4.3.1-4 -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c R_init_GenomicRanges.c -o R_init_GenomicRanges.o gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-E5Ax2d/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/build/r-base-E5Ax2d/r-base-4.3.1=/usr/src/r-base-4.3.1-4 -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c S4Vectors_stubs.c -o S4Vectors_stubs.o gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-E5Ax2d/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/build/r-base-E5Ax2d/r-base-4.3.1=/usr/src/r-base-4.3.1-4 -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c transcript_utils.c -o transcript_utils.o gcc -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o GenomicRanges.so IRanges_stubs.o R_init_GenomicRanges.o S4Vectors_stubs.o transcript_utils.o -L/usr/lib/R/lib -lR make[1]: Leaving directory '/<>/src' make[1]: Entering directory '/<>/src' make[1]: Leaving directory '/<>/src' installing to /<>/debian/r-bioc-genomicranges/usr/lib/R/site-library/00LOCK-r-bioc-genomicranges-1.52.1+dfsg/00new/GenomicRanges/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GenomicRanges) Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 299. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 301. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 302. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 305. W: Ignoring specified R dependency: R (>= 4.0.0) I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.37.0) I: Using r-bioc-s4vectors for Depends:S4Vectors (>= 0.27.12) I: Using r-bioc-iranges for Depends:IRanges (>= 2.31.2) I: Using r-bioc-genomeinfodb for Depends:GenomeInfoDb (>= 1.15.2) I: Using r-cran-matrix for Suggests:Matrix I: Using r-bioc-biobase for Suggests:Biobase I: Using r-bioc-annotationdbi for Suggests:AnnotationDbi I: Using r-bioc-annotate for Suggests:annotate I: Using r-bioc-biostrings for Suggests:Biostrings (>= 2.25.3) I: Using r-bioc-summarizedexperiment for Suggests:SummarizedExperiment (>= 0.1.5) I: Using r-bioc-rsamtools for Suggests:Rsamtools (>= 1.13.53) I: Using r-bioc-genomicalignments for Suggests:GenomicAlignments I: Using r-bioc-rtracklayer for Suggests:rtracklayer I: Using r-bioc-bsgenome for Suggests:BSgenome I: Using r-bioc-genomicfeatures for Suggests:GenomicFeatures I: Using r-bioc-gviz for Suggests:Gviz I: Using r-bioc-variantannotation for Suggests:VariantAnnotation I: Using r-bioc-annotationhub for Suggests:AnnotationHub I: Using r-bioc-deseq2 for Suggests:DESeq2 I: Using r-bioc-dexseq for Suggests:DEXSeq I: Using r-bioc-edger for Suggests:edgeR W: Cannot find a debian package for Suggests:KEGGgraph W: Cannot find a debian package for Suggests:RNAseqData.HNRNPC.bam.chr14 W: Cannot find a debian package for Suggests:pasillaBamSubset I: Using r-bioc-keggrest for Suggests:KEGGREST W: Cannot find a debian package for Suggests:hgu95av2.db W: Cannot find a debian package for Suggests:hgu95av2probe W: Cannot find a debian package for Suggests:BSgenome.Scerevisiae.UCSC.sacCer2 W: Cannot find a debian package for Suggests:BSgenome.Hsapiens.UCSC.hg19 W: Cannot find a debian package for Suggests:BSgenome.Mmusculus.UCSC.mm10 W: Cannot find a debian package for Suggests:TxDb.Athaliana.BioMart.plantsmart22 W: Cannot find a debian package for Suggests:TxDb.Dmelanogaster.UCSC.dm3.ensGene W: Cannot find a debian package for Suggests:TxDb.Hsapiens.UCSC.hg19.knownGene W: Cannot find a debian package for Suggests:TxDb.Mmusculus.UCSC.mm10.knownGene I: Using r-cran-runit for Suggests:RUnit I: Using r-cran-digest for Suggests:digest I: Using r-cran-knitr for Suggests:knitr I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-bioc-biocstyle for Suggests:BiocStyle I: Using r-bioc-xvector for Imports:XVector (>= 0.29.2) I: Using r-bioc-s4vectors for LinkingTo:S4Vectors I: Using r-bioc-iranges for LinkingTo:IRanges I: BioConductor API version: r-api-bioc-3.17 I: Use r-bioc-genomicranges as Debian binary package for variables substitution dh_installdocs -a -O--buildsystem=R dh_installchangelogs -a -O--buildsystem=R dh_installsystemduser -a -O--buildsystem=R dh_perl -a -O--buildsystem=R dh_link -a -O--buildsystem=R dh_strip_nondeterminism -a -O--buildsystem=R dh_compress -a -O--buildsystem=R dh_fixperms -a -O--buildsystem=R dh_missing -a -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R d4f07f3798ee8012b8aa15e4ff3a12fa05bcf9e8 dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -a -O--buildsystem=R dh_gencontrol -a -O--buildsystem=R dh_md5sums -a -O--buildsystem=R dh_builddeb -a -O--buildsystem=R INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing r-bioc-genomicranges (in debian/r-bioc-genomicranges); do_strip: , oemstrip: pkgstriptranslations: processing r-bioc-genomicranges-dbgsym (in debian/.debhelper/r-bioc-genomicranges/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-bioc-genomicranges/DEBIAN/control, package r-bioc-genomicranges, directory debian/r-bioc-genomicranges pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-bioc-genomicranges ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-bioc-genomicranges' in '../r-bioc-genomicranges_1.52.1+dfsg-1_armhf.deb'. pkgstripfiles: processing control file: debian/.debhelper/r-bioc-genomicranges/dbgsym-root/DEBIAN/control, package r-bioc-genomicranges-dbgsym, directory debian/.debhelper/r-bioc-genomicranges/dbgsym-root dpkg-deb: building package 'r-bioc-genomicranges-dbgsym' in 'debian/.debhelper/scratch-space/build-r-bioc-genomicranges/r-bioc-genomicranges-dbgsym_1.52.1+dfsg-1_armhf.deb'. Renaming r-bioc-genomicranges-dbgsym_1.52.1+dfsg-1_armhf.deb to r-bioc-genomicranges-dbgsym_1.52.1+dfsg-1_armhf.ddeb dpkg-genbuildinfo --build=any -O../r-bioc-genomicranges_1.52.1+dfsg-1_armhf.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../r-bioc-genomicranges_1.52.1+dfsg-1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-10-27T00:43:15Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-bioc-genomicranges_1.52.1+dfsg-1_armhf.changes: ------------------------------------------------- Format: 1.8 Date: Fri, 13 Oct 2023 15:27:21 +0200 Source: r-bioc-genomicranges Binary: r-bioc-genomicranges Built-For-Profiles: noudeb Architecture: armhf Version: 1.52.1+dfsg-1 Distribution: noble-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: r-bioc-genomicranges - BioConductor representation and manipulation of genomic intervals Changes: r-bioc-genomicranges (1.52.1+dfsg-1) unstable; urgency=medium . * New upstream version Checksums-Sha1: 425d8b5533d79ca13e31b9b0618e6f541e7ff0ce 12044 r-bioc-genomicranges-dbgsym_1.52.1+dfsg-1_armhf.ddeb aa7a39e546e45c6bddfe95da9f988122939c1826 10816 r-bioc-genomicranges_1.52.1+dfsg-1_armhf.buildinfo 4c40eac9c30d6e25100c840a1ed2957fd8a12cfb 1816848 r-bioc-genomicranges_1.52.1+dfsg-1_armhf.deb Checksums-Sha256: 5ccb4d5b414ad32b50a7e5972c933d6b52f05a4efa928ea0f62dc71ebfb92593 12044 r-bioc-genomicranges-dbgsym_1.52.1+dfsg-1_armhf.ddeb 622b07a696acce77be745ce47d529103944a40dd83e34155a5c4624a08fd1fee 10816 r-bioc-genomicranges_1.52.1+dfsg-1_armhf.buildinfo 2e3a6fe9c2b717dfc8e8bc6a7dac76cc805411424f17afdce07c736188532f48 1816848 r-bioc-genomicranges_1.52.1+dfsg-1_armhf.deb Files: e8778f20bcfef90693991124c82c6d2b 12044 debug optional r-bioc-genomicranges-dbgsym_1.52.1+dfsg-1_armhf.ddeb a8370b09f8530d7008f3004a26fe6848 10816 gnu-r optional r-bioc-genomicranges_1.52.1+dfsg-1_armhf.buildinfo eca05be607b0ecaa8d2562b00193dead 1816848 gnu-r optional r-bioc-genomicranges_1.52.1+dfsg-1_armhf.deb /<>/r-bioc-genomicranges_1.52.1+dfsg-1_armhf.changes.new could not be renamed to /<>/r-bioc-genomicranges_1.52.1+dfsg-1_armhf.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: r-bioc-genomicranges Binary: r-bioc-genomicranges r-bioc-genomicranges-dbgsym Architecture: armhf Version: 1.52.1+dfsg-1 Checksums-Md5: e8778f20bcfef90693991124c82c6d2b 12044 r-bioc-genomicranges-dbgsym_1.52.1+dfsg-1_armhf.ddeb eca05be607b0ecaa8d2562b00193dead 1816848 r-bioc-genomicranges_1.52.1+dfsg-1_armhf.deb Checksums-Sha1: 425d8b5533d79ca13e31b9b0618e6f541e7ff0ce 12044 r-bioc-genomicranges-dbgsym_1.52.1+dfsg-1_armhf.ddeb 4c40eac9c30d6e25100c840a1ed2957fd8a12cfb 1816848 r-bioc-genomicranges_1.52.1+dfsg-1_armhf.deb Checksums-Sha256: 5ccb4d5b414ad32b50a7e5972c933d6b52f05a4efa928ea0f62dc71ebfb92593 12044 r-bioc-genomicranges-dbgsym_1.52.1+dfsg-1_armhf.ddeb 2e3a6fe9c2b717dfc8e8bc6a7dac76cc805411424f17afdce07c736188532f48 1816848 r-bioc-genomicranges_1.52.1+dfsg-1_armhf.deb Build-Origin: Ubuntu Build-Architecture: armhf Build-Date: Fri, 27 Oct 2023 00:43:14 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-13), autotools-dev (= 20220109.1), base-files (= 13ubuntu3), base-passwd (= 3.6.2), bash (= 5.2.15-2ubuntu1), binutils (= 2.41-5ubuntu1), binutils-arm-linux-gnueabihf (= 2.41-5ubuntu1), binutils-common (= 2.41-5ubuntu1), bsdextrautils (= 2.39.1-4ubuntu2), bsdutils (= 1:2.39.1-4ubuntu2), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5build1), ca-certificates (= 20230311ubuntu1), coreutils (= 9.1-1ubuntu2), cpp (= 4:13.2.0-1ubuntu1), cpp-13 (= 13.2.0-4ubuntu3), dash (= 0.5.12-6ubuntu1), dctrl-tools (= 2.24-3build2), debconf (= 1.5.82), debhelper (= 13.11.7ubuntu1), debianutils (= 5.14), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-r (= 20230707ubuntu1), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.0ubuntu1), dpkg-dev (= 1.22.0ubuntu1), dwz (= 0.15-1), file (= 1:5.45-2), findutils (= 4.9.0-5), fontconfig (= 2.14.2-4ubuntu1), fontconfig-config (= 2.14.2-4ubuntu1), fonts-noto-core (= 20201225-2), fonts-noto-mono (= 20201225-2), g++ (= 4:13.2.0-1ubuntu1), g++-13 (= 13.2.0-4ubuntu3), gcc (= 4:13.2.0-1ubuntu1), gcc-13 (= 13.2.0-4ubuntu3), gcc-13-base (= 13.2.0-4ubuntu3), gettext (= 0.21-13), gettext-base (= 0.21-13), gfortran (= 4:13.2.0-1ubuntu1), gfortran-13 (= 13.2.0-4ubuntu3), grep (= 3.11-3), groff-base (= 1.23.0-3), gzip (= 1.12-1ubuntu1), hostname (= 3.23+nmu1ubuntu1), icu-devtools (= 72.1-3ubuntu3), init-system-helpers (= 1.65.2ubuntu1), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-3), libalgorithm-c3-perl (= 0.11-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 13.2.0-4ubuntu3), libatomic1 (= 13.2.0-4ubuntu3), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.1.1-1), libaudit1 (= 1:3.1.1-1), libb-hooks-endofscope-perl (= 0.26-1), libb-hooks-op-check-perl (= 0.22-2build1), libbinutils (= 2.41-5ubuntu1), libblas-dev (= 3.11.0-2build1), libblas3 (= 3.11.0-2build1), libblkid1 (= 2.39.1-4ubuntu2), libbrotli1 (= 1.0.9-2build8), libbsd0 (= 0.11.7-4), libbz2-1.0 (= 1.0.8-5build1), libbz2-dev (= 1.0.8-5build1), libc-bin (= 2.38-3ubuntu1), libc-dev-bin (= 2.38-3ubuntu1), libc6 (= 2.38-3ubuntu1), libc6-dev (= 2.38-3ubuntu1), libcairo2 (= 1.18.0-1), libcap-ng0 (= 0.8.3-1build2), libcap2 (= 1:2.66-4ubuntu1), libcc1-0 (= 13.2.0-4ubuntu3), libclass-c3-perl (= 0.35-2), libclass-load-perl (= 0.25-2), libclass-load-xs-perl (= 0.10-2build1), libclone-perl (= 0.46-1), libcom-err2 (= 1.47.0-2ubuntu1), libcrypt-dev (= 1:4.4.36-2), libcrypt1 (= 1:4.4.36-2), libctf-nobfd0 (= 2.41-5ubuntu1), libctf0 (= 2.41-5ubuntu1), libcurl3-gnutls (= 8.2.1-1ubuntu3.1), libcurl4 (= 8.2.1-1ubuntu3.1), libdata-optlist-perl (= 0.114-1), libdatrie1 (= 0.2.13-2), libdb5.3 (= 5.3.28+dfsg2-2), libdebconfclient0 (= 0.270ubuntu1), libdebhelper-perl (= 13.11.7ubuntu1), libdeflate0 (= 1.18-1), libdevel-callchecker-perl (= 0.008-2), libdevel-globaldestruction-perl (= 0.14-4), libdevel-overloadinfo-perl (= 0.007-1), libdevel-stacktrace-perl (= 2.0400-2), libdist-checkconflicts-perl (= 0.11-2), libdpkg-perl (= 1.22.0ubuntu1), libdw1 (= 0.189-4), libdynaloader-functions-perl (= 0.003-3), libelf1 (= 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6.4+20231016-1), libncurses6 (= 6.4+20231016-1), libncursesw6 (= 6.4+20231016-1), libnettle8 (= 3.9.1-2), libnghttp2-14 (= 1.57.0-1), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libp11-kit0 (= 0.25.0-4ubuntu1), libpackage-deprecationmanager-perl (= 0.18-1), libpackage-stash-perl (= 0.40-1), libpackage-stash-xs-perl (= 0.30-1build1), libpam-modules (= 1.5.2-6ubuntu1), libpam-modules-bin (= 1.5.2-6ubuntu1), libpam-runtime (= 1.5.2-6ubuntu1), libpam0g (= 1.5.2-6ubuntu1), libpango-1.0-0 (= 1.51.0+ds-2), libpangocairo-1.0-0 (= 1.51.0+ds-2), libpangoft2-1.0-0 (= 1.51.0+ds-2), libpaper-utils (= 1.1.29), libpaper1 (= 1.1.29), libparams-classify-perl (= 0.015-2build2), libparams-util-perl (= 1.102-2), libpcre2-16-0 (= 10.42-4), libpcre2-32-0 (= 10.42-4), libpcre2-8-0 (= 10.42-4), libpcre2-dev (= 10.42-4), libpcre2-posix3 (= 10.42-4), libperl5.36 (= 5.36.0-9ubuntu1), libpipeline1 (= 1.5.7-1), libpixman-1-0 (= 0.42.2-1), libpkgconf3 (= 1.8.1-2), libpng-dev (= 1.6.40-2), libpng16-16 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6.4+20231016-1), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtk8.6 (= 8.6.13-2), libtool (= 2.4.7-7), libtry-tiny-perl (= 0.31-2), libubsan1 (= 13.2.0-4ubuntu3), libuchardet0 (= 0.0.7-1build2), libudev1 (= 253.5-1ubuntu7), libunistring2 (= 1.0-2), liburi-perl (= 5.21-1), libuuid1 (= 2.39.1-4ubuntu2), libvariable-magic-perl (= 0.63-1), libwebp7 (= 1.3.2-0.3), libwww-curl-perl (= 4.17-10), libwww-curl-simple-perl (= 0.100191-3), libx11-6 (= 2:1.8.6-1ubuntu1), libx11-data (= 2:1.8.6-1ubuntu1), libxau6 (= 1:1.0.9-1build5), libxcb-render0 (= 1.15-1), libxcb-shm0 (= 1.15-1), libxcb1 (= 1.15-1), libxdmcp6 (= 1:1.1.3-0ubuntu5), libxext6 (= 2:1.3.4-1build1), libxft2 (= 2.3.6-1), libxml2 (= 2.9.14+dfsg-1.3), libxmuu1 (= 2:1.1.3-3), libxrender1 (= 1:0.9.10-1.1), libxss1 (= 1:1.2.3-1build2), libxt6 (= 1:1.2.1-1.1), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.5.0-9.9), login (= 1:4.13+dfsg1-1ubuntu1), lto-disabled-list (= 43), m4 (= 1.4.19-4), make (= 4.3-4.1build1), man-db (= 2.12.0-1), mawk (= 1.3.4.20230808-1), ncurses-base (= 6.4+20231016-1), ncurses-bin (= 6.4+20231016-1), openssl (= 3.0.10-1ubuntu2.1), patch (= 2.7.6-7build2), perl (= 5.36.0-9ubuntu1), perl-base (= 5.36.0-9ubuntu1), perl-modules-5.36 (= 5.36.0-9ubuntu1), pkg-config (= 1.8.1-2), pkgconf (= 1.8.1-2), pkgconf-bin (= 1.8.1-2), po-debconf (= 1.0.21+nmu1), r-base-core (= 4.3.1-4), r-base-dev (= 4.3.1-4), r-bioc-biocgenerics (= 0.46.0-1), r-bioc-genomeinfodb (= 1.36.1+dfsg-1), r-bioc-genomeinfodbdata (= 1.2.10-1), r-bioc-iranges (= 2.34.1-1), r-bioc-s4vectors (= 0.38.1+dfsg-1), r-bioc-xvector (= 0.40.0-1), r-bioc-zlibbioc (= 1.46.0+dfsg-1), r-cran-bitops (= 1.0-7-1), r-cran-rcurl (= 1.98-1.12+dfsg-1), readline-common (= 8.2-1.3), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.9-1), sensible-utils (= 0.0.20), sysvinit-utils (= 3.07-1ubuntu1), tar (= 1.34+dfsg-1.2ubuntu1), tzdata (= 2023c-9ubuntu1), ucf (= 3.0043+nmu1), unzip (= 6.0-28ubuntu1), util-linux (= 2.39.1-4ubuntu2), x11-common (= 1:7.7+23ubuntu2), xauth (= 1:1.1.2-1), xdg-utils (= 1.1.3-4.1ubuntu3), xz-utils (= 5.4.4-0.1), zip (= 3.0-13), zlib1g (= 1:1.2.13.dfsg-1ubuntu5), zlib1g-dev (= 1:1.2.13.dfsg-1ubuntu5) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1697203641" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-bioc-genomicranges_1.52.1+dfsg-1_armhf.deb -------------------------------------------- new Debian package, version 2.0. size 1816848 bytes: control archive=2519 bytes. 1440 bytes, 17 lines control 5251 bytes, 55 lines md5sums Package: r-bioc-genomicranges Version: 1.52.1+dfsg-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian R Packages Maintainers Installed-Size: 2766 Depends: r-api-4.0, r-api-bioc-3.17, r-bioc-biocgenerics (>= 0.37.0), r-bioc-s4vectors (>= 0.27.12), r-bioc-iranges (>= 2.31.2), r-bioc-genomeinfodb (>= 1.15.2), r-bioc-xvector (>= 0.29.2), libc6 (>= 2.4) Suggests: r-cran-matrix, r-bioc-biobase, r-bioc-annotationdbi, r-bioc-annotate, r-bioc-biostrings (>= 2.25.3), r-bioc-summarizedexperiment (>= 0.1.5), r-bioc-rsamtools (>= 1.13.53), r-bioc-genomicalignments, r-bioc-rtracklayer, r-bioc-bsgenome, r-bioc-genomicfeatures, r-bioc-gviz, r-bioc-variantannotation, r-bioc-annotationhub, r-bioc-deseq2, r-bioc-dexseq, r-bioc-edger, r-bioc-keggrest, r-cran-runit, r-cran-digest, r-cran-knitr, r-cran-rmarkdown, r-bioc-biocstyle Section: gnu-r Priority: optional Homepage: https://bioconductor.org/packages/GenomicRanges/ Description: BioConductor representation and manipulation of genomic intervals The ability to efficiently store genomic annotations and alignments is playing a central role when it comes to analyze high-throughput sequencing data (a.k.a. NGS data). 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13:27 ./usr/lib/R/site-library/GenomicRanges/unitTests/test_setops-methods.R drwxr-xr-x root/root 0 2023-10-13 13:27 ./usr/share/ drwxr-xr-x root/root 0 2023-10-13 13:27 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-10-13 13:27 ./usr/share/doc/r-bioc-genomicranges/ -rw-r--r-- root/root 859 2023-10-13 13:27 ./usr/share/doc/r-bioc-genomicranges/changelog.Debian.gz -rw-r--r-- root/root 5382 2023-10-13 13:27 ./usr/share/doc/r-bioc-genomicranges/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: any Build-Space: 6916 Build-Time: 101 Distribution: noble-proposed Host Architecture: armhf Install-Time: 50 Job: r-bioc-genomicranges_1.52.1+dfsg-1.dsc Machine Architecture: arm64 Package: r-bioc-genomicranges Package-Time: 155 Source-Version: 1.52.1+dfsg-1 Space: 6916 Status: successful Version: 1.52.1+dfsg-1 -------------------------------------------------------------------------------- Finished at 2023-10-27T00:43:15Z Build needed 00:02:35, 6916k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=armhf PACKAGEBUILD-26922056 Scanning for processes to kill in build PACKAGEBUILD-26922056