https://launchpad.net/ubuntu/+source/r-bioc-genomicranges/1.52.1+dfsg-1/+build/26922058 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux riscv64-qemu-lgw01-025 5.13.0-1019-generic #21~20.04.1-Ubuntu SMP Thu Mar 24 22:36:01 UTC 2022 riscv64 Buildd toolchain package versions: launchpad-buildd_234~642~ubuntu20.04.1 python3-lpbuildd_234~642~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git_1:2.25.1-1ubuntu3.2 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 28 Oct 21:39:29 ntpdate[308231]: adjust time server 10.211.37.1 offset 0.003747 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-26922058 --image-type chroot /home/buildd/filecache-default/20a3246b7a16d5658607d7f37229fcda30a33651 Creating target for build PACKAGEBUILD-26922058 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-26922058 Starting target for build PACKAGEBUILD-26922058 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-26922058 'deb http://ftpmaster.internal/ubuntu noble main universe' 'deb http://ftpmaster.internal/ubuntu noble-security main universe' 'deb http://ftpmaster.internal/ubuntu noble-updates main universe' 'deb http://ftpmaster.internal/ubuntu noble-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-26922058 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-26922058 Updating target for build PACKAGEBUILD-26922058 Get:1 http://ftpmaster.internal/ubuntu noble InRelease [213 kB] Get:2 http://ftpmaster.internal/ubuntu noble-security InRelease [74.9 kB] Get:3 http://ftpmaster.internal/ubuntu noble-updates InRelease [74.9 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease [74.9 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main riscv64 Packages [1338 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main Translation-en [517 kB] Get:7 http://ftpmaster.internal/ubuntu noble/universe riscv64 Packages [14.0 MB] Get:8 http://ftpmaster.internal/ubuntu noble/universe Translation-en [5965 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 Packages [134 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main Translation-en [61.6 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 Packages [935 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe Translation-en [652 kB] Fetched 24.1 MB in 42s (578 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libunistring2 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: libunistring5 The following packages will be upgraded: apt apt-utils base-passwd bash-completion debianutils diffutils grep libapt-pkg6.0 libc-bin libc-dev-bin libc6 libc6-dev libgnutls30 libidn2-0 liblzma5 libncursesw6 libnsl-dev libnsl2 libpng16-16 libsqlite3-0 libssl3 libsystemd-shared libsystemd0 libtinfo6 libudev1 libxxhash0 libzstd1 mawk ncurses-base ncurses-bin openssl optipng systemd systemd-dev systemd-sysv xz-utils 36 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 22.7 MB of archives. After this operation, 2148 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu noble/main riscv64 debianutils riscv64 5.14 [88.8 kB] Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 diffutils riscv64 1:3.10-1 [180 kB] Get:3 http://ftpmaster.internal/ubuntu noble/main riscv64 grep riscv64 3.11-3 [167 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 ncurses-bin riscv64 6.4+20231016-1 [184 kB] Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libnsl-dev riscv64 1.3.0-3 [135 kB] Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libc6-dev riscv64 2.38-3ubuntu1 [3401 kB] Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libc-dev-bin riscv64 2.38-3ubuntu1 [19.2 kB] Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libnsl2 riscv64 1.3.0-3 [42.0 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libc6 riscv64 2.38-3ubuntu1 [2742 kB] Get:10 http://ftpmaster.internal/ubuntu noble/main riscv64 base-passwd riscv64 3.6.2 [52.1 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libc-bin riscv64 2.38-3ubuntu1 [601 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 ncurses-base all 6.4+20231016-1 [24.7 kB] Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 liblzma5 riscv64 5.4.4-0.1 [127 kB] Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libssl3 riscv64 3.0.10-1ubuntu2.1 [1712 kB] Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libzstd1 riscv64 1.5.5+dfsg2-2 [349 kB] Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 systemd-sysv riscv64 253.5-1ubuntu7 [11.5 kB] Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 systemd-dev all 253.5-1ubuntu7 [78.5 kB] Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 systemd riscv64 253.5-1ubuntu7 [3067 kB] Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libsystemd-shared riscv64 253.5-1ubuntu7 [1903 kB] Get:20 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libsystemd0 riscv64 253.5-1ubuntu7 [423 kB] Get:21 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libudev1 riscv64 253.5-1ubuntu7 [163 kB] Get:22 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libxxhash0 riscv64 0.8.2-2 [43.7 kB] Get:23 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libapt-pkg6.0 riscv64 2.7.6 [989 kB] Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 apt riscv64 2.7.6 [1335 kB] Get:25 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 apt-utils riscv64 2.7.6 [225 kB] Get:26 http://ftpmaster.internal/ubuntu noble/main riscv64 libunistring5 riscv64 1.1-2 [544 kB] Get:27 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libidn2-0 riscv64 2.3.4-1build1 [99.3 kB] Get:28 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libgnutls30 riscv64 3.8.1-4ubuntu3 [995 kB] Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libncursesw6 riscv64 6.4+20231016-1 [150 kB] Get:30 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libtinfo6 riscv64 6.4+20231016-1 [107 kB] Get:31 http://ftpmaster.internal/ubuntu noble/main riscv64 mawk riscv64 1.3.4.20230808-1 [125 kB] Get:32 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libsqlite3-0 riscv64 3.43.2-1 [693 kB] Get:33 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 openssl riscv64 3.0.10-1ubuntu2.1 [1170 kB] Get:34 http://ftpmaster.internal/ubuntu noble/main riscv64 bash-completion all 1:2.11-8 [180 kB] Get:35 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libpng16-16 riscv64 1.6.40-2 [189 kB] Get:36 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 xz-utils riscv64 5.4.4-0.1 [268 kB] Get:37 http://ftpmaster.internal/ubuntu noble/main riscv64 optipng riscv64 0.7.7-3 [86.9 kB] Preconfiguring packages ... 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Setting up systemd-sysv (253.5-1ubuntu7) ... Processing triggers for libc-bin (2.38-3ubuntu1) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-26922058 riscv64 noble-proposed -c chroot:build-PACKAGEBUILD-26922058 --arch=riscv64 --dist=noble-proposed --nolog r-bioc-genomicranges_1.52.1+dfsg-1.dsc Initiating build PACKAGEBUILD-26922058 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 5.13.0-1019-generic #21~20.04.1-Ubuntu SMP Thu Mar 24 22:36:01 UTC 2022 riscv64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on riscv64-qemu-lgw01-025.buildd +==============================================================================+ | r-bioc-genomicranges 1.52.1+dfsg-1 (riscv64) Sat, 28 Oct 2023 21:44:42 +0000 | +==============================================================================+ Package: r-bioc-genomicranges Version: 1.52.1+dfsg-1 Source Version: 1.52.1+dfsg-1 Distribution: noble-proposed Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-26922058/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-genomicranges-0GoN3y/resolver-BEjeeO' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-bioc-genomicranges_1.52.1+dfsg-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/r-bioc-genomicranges-0GoN3y/r-bioc-genomicranges-1.52.1+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-genomicranges-0GoN3y' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.37.0), r-bioc-s4vectors, r-bioc-iranges (>= 2.31.2), r-bioc-genomeinfodb, r-bioc-xvector, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.37.0), r-bioc-s4vectors, r-bioc-iranges (>= 2.31.2), r-bioc-genomeinfodb, r-bioc-xvector, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [436 B] Get:5 copy:/<>/apt_archive ./ Packages [519 B] Fetched 1912 B in 0s (4148 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils bash-completion debconf-i18n krb5-locales libgpg-error-l10n libgpm2 liblocale-gettext-perl libnss-nis libnss-nisplus libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libunistring2 psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev dctrl-tools debhelper debugedit dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-noto-core fonts-noto-mono gettext gettext-base gfortran gfortran-13 groff-base icu-devtools intltool-debian libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libclone-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdw1 libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-13-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu72 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libldap2 liblerc4 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses6 libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpsl5 libreadline-dev librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff6 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db pkg-config pkgconf pkgconf-bin po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-iranges r-bioc-s4vectors r-bioc-xvector r-bioc-zlibbioc r-cran-bitops r-cran-rcurl ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc debtags dh-make postgresql-client-common gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc gfortran-13-doc libcoarrays-dev groff liblapack-doc low-memory-monitor libio-compress-brotli-perl icu-doc liblzma-doc ncurses-doc libscalar-number-perl readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk libbusiness-isbn-perl libregexp-ipv6-perl libwww-perl libcurl4-gnutls-dev m4-doc apparmor less www-browser libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo r-bioc-biobase r-bioc-genomicranges r-bioc-delayedarray r-bioc-biostrings r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-runit r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-bsgenome r-bioc-biocstyle r-cran-knitr r-bioc-summarizedexperiment r-cran-matrix r-bioc-shortread r-bioc-graph r-cran-data.table r-cran-xml Recommended packages: devscripts cme git-buildpackage curl | wget | lynx bzip2-doc libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libldap-common libdevel-partialdump-perl libpng-tools publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl r-recommended r-doc-html libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev dctrl-tools debhelper debugedit dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-noto-core fonts-noto-mono gettext gettext-base gfortran gfortran-13 groff-base icu-devtools intltool-debian libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libclone-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdw1 libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-13-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu72 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libldap2 liblerc4 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses6 libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpsl5 libreadline-dev librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff6 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db pkg-config pkgconf pkgconf-bin po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-iranges r-bioc-s4vectors r-bioc-xvector r-bioc-zlibbioc r-cran-bitops r-cran-rcurl sbuild-build-depends-main-dummy ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 179 newly installed, 0 to remove and 0 not upgraded. Need to get 145 MB of archives. After this operation, 487 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [732 B] Get:2 http://ftpmaster.internal/ubuntu noble/main riscv64 libbsd0 riscv64 0.11.7-4 [38.2 kB] Get:3 http://ftpmaster.internal/ubuntu noble/main riscv64 libelf1 riscv64 0.189-4 [51.9 kB] Get:4 http://ftpmaster.internal/ubuntu noble/main riscv64 libexpat1 riscv64 2.5.0-2 [78.2 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main riscv64 libfribidi0 riscv64 1.0.13-3 [26.1 kB] Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libglib2.0-0 riscv64 2.78.1-1 [1586 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main riscv64 libicu72 riscv64 72.1-3ubuntu3 [10.8 MB] Get:8 http://ftpmaster.internal/ubuntu noble/main riscv64 libxml2 riscv64 2.9.14+dfsg-1.3 [599 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main riscv64 ucf all 3.0043+nmu1 [56.5 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libmagic-mgc riscv64 1:5.45-2 [307 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libmagic1 riscv64 1:5.45-2 [93.6 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 file riscv64 1:5.45-2 [21.7 kB] Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 gettext-base riscv64 0.21-13build1 [41.6 kB] Get:14 http://ftpmaster.internal/ubuntu noble/main riscv64 libuchardet0 riscv64 0.0.7-1build2 [78.9 kB] Get:15 http://ftpmaster.internal/ubuntu noble/main riscv64 groff-base riscv64 1.23.0-3 [1017 kB] Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libncurses6 riscv64 6.4+20231016-1 [113 kB] Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libnghttp2-14 riscv64 1.57.0-1 [82.4 kB] Get:18 http://ftpmaster.internal/ubuntu noble/main riscv64 libpipeline1 riscv64 1.5.7-1 [26.8 kB] Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libpsl5 riscv64 0.21.2-1build1 [57.2 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main riscv64 libxau6 riscv64 1:1.0.9-1build5 [6836 B] Get:21 http://ftpmaster.internal/ubuntu noble/main riscv64 libxdmcp6 riscv64 1:1.1.3-0ubuntu5 [10.3 kB] Get:22 http://ftpmaster.internal/ubuntu noble/main riscv64 libxcb1 riscv64 1.15-1 [42.1 kB] Get:23 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libx11-data all 2:1.8.7-1 [115 kB] Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libx11-6 riscv64 2:1.8.7-1 [663 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main riscv64 libxext6 riscv64 2:1.3.4-1build1 [27.8 kB] Get:26 http://ftpmaster.internal/ubuntu noble/main riscv64 libxmuu1 riscv64 2:1.1.3-3 [9444 B] Get:27 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 man-db riscv64 2.12.0-1 [1214 kB] Get:28 http://ftpmaster.internal/ubuntu noble/main riscv64 xauth riscv64 1:1.1.2-1 [24.4 kB] Get:29 http://ftpmaster.internal/ubuntu noble/main riscv64 m4 riscv64 1.4.19-4 [261 kB] Get:30 http://ftpmaster.internal/ubuntu noble/main riscv64 autoconf all 2.71-3 [339 kB] Get:31 http://ftpmaster.internal/ubuntu noble/main riscv64 autotools-dev all 20220109.1 [44.9 kB] Get:32 http://ftpmaster.internal/ubuntu noble/main riscv64 automake all 1:1.16.5-1.3 [558 kB] Get:33 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 autopoint all 0.21-13build1 [422 kB] Get:34 http://ftpmaster.internal/ubuntu noble/main riscv64 dctrl-tools riscv64 2.24-3build2 [58.2 kB] Get:35 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libdebhelper-perl all 13.11.7ubuntu1 [85.8 kB] Get:36 http://ftpmaster.internal/ubuntu noble/main riscv64 libtool all 2.4.7-7 [166 kB] Get:37 http://ftpmaster.internal/ubuntu noble/main riscv64 dh-autoreconf all 20 [16.1 kB] Get:38 http://ftpmaster.internal/ubuntu noble/main riscv64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:39 http://ftpmaster.internal/ubuntu noble/main riscv64 libsub-override-perl all 0.09-4 [8706 B] Get:40 http://ftpmaster.internal/ubuntu noble/main riscv64 libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main riscv64 dh-strip-nondeterminism all 1.13.1-1 [5362 B] Get:42 http://ftpmaster.internal/ubuntu noble/main riscv64 libdw1 riscv64 0.189-4 [234 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main riscv64 debugedit riscv64 1:5.0-5 [48.8 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main riscv64 dwz riscv64 0.15-1 [115 kB] Get:45 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 gettext riscv64 0.21-13build1 [867 kB] Get:46 http://ftpmaster.internal/ubuntu noble/main riscv64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:47 http://ftpmaster.internal/ubuntu noble/main riscv64 po-debconf all 1.0.21+nmu1 [233 kB] Get:48 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 debhelper all 13.11.7ubuntu1 [940 kB] Get:49 http://ftpmaster.internal/ubuntu noble/main riscv64 zip riscv64 3.0-13 [167 kB] Get:50 http://ftpmaster.internal/ubuntu noble/main riscv64 unzip riscv64 6.0-28ubuntu1 [166 kB] Get:51 http://ftpmaster.internal/ubuntu noble/main riscv64 libpaper1 riscv64 1.1.29 [12.6 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main riscv64 libpaper-utils riscv64 1.1.29 [8248 B] Get:53 http://ftpmaster.internal/ubuntu noble/main riscv64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] Get:54 http://ftpmaster.internal/ubuntu noble/main riscv64 libblas3 riscv64 3.11.0-2build1 [131 kB] Get:55 http://ftpmaster.internal/ubuntu noble/main riscv64 libbrotli1 riscv64 1.0.9-2build8 [324 kB] Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libfreetype6 riscv64 2.13.2+dfsg-1 [420 kB] Get:57 http://ftpmaster.internal/ubuntu noble/main riscv64 fonts-noto-mono all 20201225-2 [435 kB] Get:58 http://ftpmaster.internal/ubuntu noble/main riscv64 fonts-noto-core all 20201225-2 [13.3 MB] Get:59 http://ftpmaster.internal/ubuntu noble/main riscv64 fontconfig-config riscv64 2.14.2-4ubuntu1 [35.8 kB] Get:60 http://ftpmaster.internal/ubuntu noble/main riscv64 libfontconfig1 riscv64 2.14.2-4ubuntu1 [139 kB] Get:61 http://ftpmaster.internal/ubuntu noble/main riscv64 libpixman-1-0 riscv64 0.42.2-1 [165 kB] Get:62 http://ftpmaster.internal/ubuntu noble/main riscv64 libxcb-render0 riscv64 1.15-1 [13.8 kB] Get:63 http://ftpmaster.internal/ubuntu noble/main riscv64 libxcb-shm0 riscv64 1.15-1 [5326 B] Get:64 http://ftpmaster.internal/ubuntu noble/main riscv64 libxrender1 riscv64 1:0.9.10-1.1 [17.5 kB] Get:65 http://ftpmaster.internal/ubuntu noble/main riscv64 libcairo2 riscv64 1.18.0-1 [595 kB] Get:66 http://ftpmaster.internal/ubuntu noble/main riscv64 libsasl2-modules-db riscv64 2.1.28+dfsg1-3 [21.5 kB] Get:67 http://ftpmaster.internal/ubuntu noble/main riscv64 libsasl2-2 riscv64 2.1.28+dfsg1-3 [61.1 kB] Get:68 http://ftpmaster.internal/ubuntu noble/main riscv64 libldap2 riscv64 2.6.6+dfsg-1~exp1ubuntu1 [201 kB] Get:69 http://ftpmaster.internal/ubuntu noble/main riscv64 librtmp1 riscv64 2.4+20151223.gitfa8646d.1-2build4 [54.6 kB] Get:70 http://ftpmaster.internal/ubuntu noble/main riscv64 libssh-4 riscv64 0.10.5-3ubuntu1 [195 kB] Get:71 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libcurl4 riscv64 8.2.1-1ubuntu3.1 [329 kB] Get:72 http://ftpmaster.internal/ubuntu noble/main riscv64 libjpeg-turbo8 riscv64 2.1.5-2ubuntu1 [119 kB] Get:73 http://ftpmaster.internal/ubuntu noble/main riscv64 libjpeg8 riscv64 8c-2ubuntu11 [2150 B] Get:74 http://ftpmaster.internal/ubuntu noble/main riscv64 libgfortran5 riscv64 13.2.0-4ubuntu3 [457 kB] Get:75 http://ftpmaster.internal/ubuntu noble/main riscv64 liblapack3 riscv64 3.11.0-2build1 [2088 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main riscv64 fontconfig riscv64 2.14.2-4ubuntu1 [190 kB] Get:77 http://ftpmaster.internal/ubuntu noble/main riscv64 libgraphite2-3 riscv64 1.3.14-1build2 [71.5 kB] Get:78 http://ftpmaster.internal/ubuntu noble/main riscv64 libharfbuzz0b riscv64 8.0.1-1 [489 kB] Get:79 http://ftpmaster.internal/ubuntu noble/main riscv64 libthai-data all 0.1.29-1build1 [162 kB] Get:80 http://ftpmaster.internal/ubuntu noble/main riscv64 libdatrie1 riscv64 0.2.13-2 [17.8 kB] Get:81 http://ftpmaster.internal/ubuntu noble/main riscv64 libthai0 riscv64 0.1.29-1build1 [16.8 kB] Get:82 http://ftpmaster.internal/ubuntu noble/main riscv64 libpango-1.0-0 riscv64 1.51.0+ds-2 [229 kB] Get:83 http://ftpmaster.internal/ubuntu noble/main riscv64 libpangoft2-1.0-0 riscv64 1.51.0+ds-2 [41.4 kB] Get:84 http://ftpmaster.internal/ubuntu noble/main riscv64 libpangocairo-1.0-0 riscv64 1.51.0+ds-2 [28.3 kB] Get:85 http://ftpmaster.internal/ubuntu noble/main riscv64 libtcl8.6 riscv64 8.6.13+dfsg-2 [944 kB] Get:86 http://ftpmaster.internal/ubuntu noble/main riscv64 libdeflate0 riscv64 1.18-1 [39.0 kB] Get:87 http://ftpmaster.internal/ubuntu noble/main riscv64 libjbig0 riscv64 2.1-6.1ubuntu1 [28.0 kB] Get:88 http://ftpmaster.internal/ubuntu noble/main riscv64 liblerc4 riscv64 4.0.0+ds-2ubuntu2 [172 kB] Get:89 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libsharpyuv0 riscv64 1.3.2-0.3 [14.0 kB] Get:90 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libwebp7 riscv64 1.3.2-0.3 [198 kB] Get:91 http://ftpmaster.internal/ubuntu noble/main riscv64 libtiff6 riscv64 4.5.1+git230720-1ubuntu1 [200 kB] Get:92 http://ftpmaster.internal/ubuntu noble/main riscv64 libxft2 riscv64 2.3.6-1 [39.0 kB] Get:93 http://ftpmaster.internal/ubuntu noble/main riscv64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] Get:94 http://ftpmaster.internal/ubuntu noble/main riscv64 libxss1 riscv64 1:1.2.3-1build2 [7676 B] Get:95 http://ftpmaster.internal/ubuntu noble/main riscv64 libtk8.6 riscv64 8.6.13-2 [698 kB] Get:96 http://ftpmaster.internal/ubuntu noble/main riscv64 libice6 riscv64 2:1.0.10-1build2 [37.3 kB] Get:97 http://ftpmaster.internal/ubuntu noble/main riscv64 libsm6 riscv64 2:1.2.3-1build2 [15.3 kB] Get:98 http://ftpmaster.internal/ubuntu noble/main riscv64 libxt6 riscv64 1:1.2.1-1.1 [146 kB] Get:99 http://ftpmaster.internal/ubuntu noble/universe riscv64 r-base-core riscv64 4.3.1-4 [26.9 MB] Get:100 http://ftpmaster.internal/ubuntu noble/main riscv64 libgfortran-13-dev riscv64 13.2.0-4ubuntu3 [1330 kB] Get:101 http://ftpmaster.internal/ubuntu noble/main riscv64 gfortran-13 riscv64 13.2.0-4ubuntu3 [11.0 MB] Get:102 http://ftpmaster.internal/ubuntu noble/main riscv64 gfortran riscv64 4:13.2.0-1ubuntu1 [1184 B] Get:103 http://ftpmaster.internal/ubuntu noble/main riscv64 libblas-dev riscv64 3.11.0-2build1 [295 kB] Get:104 http://ftpmaster.internal/ubuntu noble/main riscv64 liblapack-dev riscv64 3.11.0-2build1 [13.0 MB] Get:105 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libncurses-dev riscv64 6.4+20231016-1 [986 kB] Get:106 http://ftpmaster.internal/ubuntu noble/main riscv64 libreadline-dev riscv64 8.2-1.3 [357 kB] Get:107 http://ftpmaster.internal/ubuntu noble/main riscv64 libjpeg-turbo8-dev riscv64 2.1.5-2ubuntu1 [434 kB] Get:108 http://ftpmaster.internal/ubuntu noble/main riscv64 libjpeg8-dev riscv64 8c-2ubuntu11 [1486 B] Get:109 http://ftpmaster.internal/ubuntu noble/main riscv64 libjpeg-dev riscv64 8c-2ubuntu11 [1484 B] Get:110 http://ftpmaster.internal/ubuntu noble/main riscv64 libpcre2-16-0 riscv64 10.42-4 [210 kB] Get:111 http://ftpmaster.internal/ubuntu noble/main riscv64 libpcre2-32-0 riscv64 10.42-4 [197 kB] Get:112 http://ftpmaster.internal/ubuntu noble/main riscv64 libpcre2-posix3 riscv64 10.42-4 [6420 B] Get:113 http://ftpmaster.internal/ubuntu noble/main riscv64 libpcre2-dev riscv64 10.42-4 [2004 kB] Get:114 http://ftpmaster.internal/ubuntu noble/main riscv64 zlib1g-dev riscv64 1:1.2.13.dfsg-1ubuntu5 [972 kB] Get:115 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libpng-dev riscv64 1.6.40-2 [455 kB] Get:116 http://ftpmaster.internal/ubuntu noble/main riscv64 libbz2-dev riscv64 1.0.8-5build1 [88.9 kB] Get:117 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 liblzma-dev riscv64 5.4.4-0.1 [343 kB] Get:118 http://ftpmaster.internal/ubuntu noble/main riscv64 icu-devtools riscv64 72.1-3ubuntu3 [219 kB] Get:119 http://ftpmaster.internal/ubuntu noble/main riscv64 libicu-dev riscv64 72.1-3ubuntu3 [17.0 MB] Get:120 http://ftpmaster.internal/ubuntu noble/main riscv64 libpkgconf3 riscv64 1.8.1-2 [27.8 kB] Get:121 http://ftpmaster.internal/ubuntu noble/main riscv64 pkgconf-bin riscv64 1.8.1-2 [20.4 kB] Get:122 http://ftpmaster.internal/ubuntu noble/main riscv64 pkgconf riscv64 1.8.1-2 [16.7 kB] Get:123 http://ftpmaster.internal/ubuntu noble/main riscv64 pkg-config riscv64 1.8.1-2 [7172 B] Get:124 http://ftpmaster.internal/ubuntu noble/universe riscv64 r-base-dev all 4.3.1-4 [4332 B] Get:125 http://ftpmaster.internal/ubuntu noble/main riscv64 libfile-which-perl all 1.27-2 [12.5 kB] Get:126 http://ftpmaster.internal/ubuntu noble/universe riscv64 libswitch-perl all 2.17-3 [18.9 kB] Get:127 http://ftpmaster.internal/ubuntu noble/main riscv64 libclone-perl riscv64 0.46-1 [10.0 kB] Get:128 http://ftpmaster.internal/ubuntu noble/main riscv64 libencode-locale-perl all 1.05-3 [11.6 kB] Get:129 http://ftpmaster.internal/ubuntu noble/main riscv64 libtimedate-perl all 2.3300-2 [34.0 kB] Get:130 http://ftpmaster.internal/ubuntu noble/main riscv64 libhttp-date-perl all 6.05-2 [9946 B] Get:131 http://ftpmaster.internal/ubuntu noble/main riscv64 libio-html-perl all 1.004-3 [15.9 kB] Get:132 http://ftpmaster.internal/ubuntu noble/main riscv64 liblwp-mediatypes-perl all 6.04-2 [20.1 kB] Get:133 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 liburi-perl all 5.21-1 [85.4 kB] Get:134 http://ftpmaster.internal/ubuntu noble/main riscv64 libhttp-message-perl all 6.44-2ubuntu1 [78.0 kB] Get:135 http://ftpmaster.internal/ubuntu noble/main riscv64 libparams-util-perl riscv64 1.102-2 [20.5 kB] Get:136 http://ftpmaster.internal/ubuntu noble/main riscv64 libsub-install-perl all 0.929-1 [9764 B] Get:137 http://ftpmaster.internal/ubuntu noble/main riscv64 libdata-optlist-perl all 0.114-1 [9708 B] Get:138 http://ftpmaster.internal/ubuntu noble/main riscv64 libb-hooks-op-check-perl riscv64 0.22-2build1 [9134 B] Get:139 http://ftpmaster.internal/ubuntu noble/main riscv64 libdynaloader-functions-perl all 0.003-3 [12.1 kB] Get:140 http://ftpmaster.internal/ubuntu noble/main riscv64 libdevel-callchecker-perl riscv64 0.008-2 [13.5 kB] Get:141 http://ftpmaster.internal/ubuntu noble/main riscv64 libparams-classify-perl riscv64 0.015-2build2 [19.6 kB] Get:142 http://ftpmaster.internal/ubuntu noble/main riscv64 libmodule-runtime-perl all 0.016-2 [16.4 kB] Get:143 http://ftpmaster.internal/ubuntu noble/main riscv64 libtry-tiny-perl all 0.31-2 [20.8 kB] Get:144 http://ftpmaster.internal/ubuntu noble/main riscv64 libmodule-implementation-perl all 0.09-2 [12.0 kB] Get:145 http://ftpmaster.internal/ubuntu noble/main riscv64 libpackage-stash-perl all 0.40-1 [19.5 kB] Get:146 http://ftpmaster.internal/ubuntu noble/universe riscv64 libclass-load-perl all 0.25-2 [12.7 kB] Get:147 http://ftpmaster.internal/ubuntu noble/universe riscv64 libclass-load-xs-perl riscv64 0.10-2build1 [13.1 kB] Get:148 http://ftpmaster.internal/ubuntu noble/main riscv64 libsub-exporter-progressive-perl all 0.001013-3 [6718 B] Get:149 http://ftpmaster.internal/ubuntu noble/universe riscv64 libdevel-globaldestruction-perl all 0.14-4 [6114 B] Get:150 http://ftpmaster.internal/ubuntu noble/universe riscv64 libalgorithm-c3-perl all 0.11-2 [10.2 kB] Get:151 http://ftpmaster.internal/ubuntu noble/universe riscv64 libclass-c3-perl all 0.35-2 [18.4 kB] Get:152 http://ftpmaster.internal/ubuntu noble/universe riscv64 libmro-compat-perl all 0.15-2 [10.1 kB] Get:153 http://ftpmaster.internal/ubuntu noble/universe riscv64 libdevel-overloadinfo-perl all 0.007-1 [7422 B] Get:154 http://ftpmaster.internal/ubuntu noble/main riscv64 libdevel-stacktrace-perl all 2.0400-2 [22.2 kB] Get:155 http://ftpmaster.internal/ubuntu noble/main riscv64 libsub-exporter-perl all 0.990-1 [49.0 kB] Get:156 http://ftpmaster.internal/ubuntu noble/universe riscv64 libeval-closure-perl all 0.14-3 [10.1 kB] Get:157 http://ftpmaster.internal/ubuntu noble/universe riscv64 libdist-checkconflicts-perl all 0.11-2 [9942 B] Get:158 http://ftpmaster.internal/ubuntu noble/universe riscv64 libmodule-runtime-conflicts-perl all 0.003-2 [6956 B] Get:159 http://ftpmaster.internal/ubuntu noble/universe riscv64 libpackage-deprecationmanager-perl all 0.18-1 [16.7 kB] Get:160 http://ftpmaster.internal/ubuntu noble/main riscv64 libpackage-stash-xs-perl riscv64 0.30-1build1 [17.6 kB] Get:161 http://ftpmaster.internal/ubuntu noble/universe riscv64 libmoose-perl riscv64 2.2206-1 [749 kB] Get:162 http://ftpmaster.internal/ubuntu noble/main riscv64 libvariable-magic-perl riscv64 0.63-1 [32.9 kB] Get:163 http://ftpmaster.internal/ubuntu noble/main riscv64 libb-hooks-endofscope-perl all 0.26-1 [17.8 kB] Get:164 http://ftpmaster.internal/ubuntu noble/main riscv64 libsub-identify-perl riscv64 0.14-3 [9428 B] Get:165 http://ftpmaster.internal/ubuntu noble/main riscv64 libsub-name-perl riscv64 0.27-1 [10.3 kB] Get:166 http://ftpmaster.internal/ubuntu noble/main riscv64 libnamespace-clean-perl all 0.27-2 [14.0 kB] Get:167 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libcurl3-gnutls riscv64 8.2.1-1ubuntu3.1 [323 kB] Get:168 http://ftpmaster.internal/ubuntu noble/universe riscv64 libwww-curl-perl riscv64 4.17-10 [56.4 kB] Get:169 http://ftpmaster.internal/ubuntu noble/universe riscv64 libwww-curl-simple-perl all 0.100191-3 [11.2 kB] Get:170 http://ftpmaster.internal/ubuntu noble/universe riscv64 dh-r all 20230707ubuntu1 [39.1 kB] Get:171 http://ftpmaster.internal/ubuntu noble/universe riscv64 r-bioc-biocgenerics all 0.46.0-1 [591 kB] Get:172 http://ftpmaster.internal/ubuntu noble/universe riscv64 r-bioc-s4vectors riscv64 0.38.1+dfsg-1 [2052 kB] Get:173 http://ftpmaster.internal/ubuntu noble/universe riscv64 r-bioc-iranges riscv64 2.34.1-1 [2250 kB] Get:174 http://ftpmaster.internal/ubuntu noble/universe riscv64 r-cran-bitops riscv64 1.0-7-1 [28.9 kB] Get:175 http://ftpmaster.internal/ubuntu noble/universe riscv64 r-cran-rcurl riscv64 1.98-1.12+dfsg-1 [790 kB] Get:176 http://ftpmaster.internal/ubuntu noble/universe riscv64 r-bioc-genomeinfodbdata all 1.2.10-1 [12.0 MB] Get:177 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 r-bioc-genomeinfodb all 1.36.4+dfsg-1 [3877 kB] Get:178 http://ftpmaster.internal/ubuntu noble/universe riscv64 r-bioc-zlibbioc all 1.46.0+dfsg-1 [9592 B] Get:179 http://ftpmaster.internal/ubuntu noble/universe riscv64 r-bioc-xvector riscv64 0.40.0-1 [623 kB] Preconfiguring packages ... Fetched 145 MB in 27s (5352 kB/s) Selecting previously unselected package libbsd0:riscv64. (Reading database ... 13549 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.11.7-4_riscv64.deb ... Unpacking libbsd0:riscv64 (0.11.7-4) ... Selecting previously unselected package libelf1:riscv64. Preparing to unpack .../001-libelf1_0.189-4_riscv64.deb ... Unpacking libelf1:riscv64 (0.189-4) ... Selecting previously unselected package libexpat1:riscv64. Preparing to unpack .../002-libexpat1_2.5.0-2_riscv64.deb ... Unpacking libexpat1:riscv64 (2.5.0-2) ... Selecting previously unselected package libfribidi0:riscv64. Preparing to unpack .../003-libfribidi0_1.0.13-3_riscv64.deb ... Unpacking libfribidi0:riscv64 (1.0.13-3) ... Selecting previously unselected package libglib2.0-0:riscv64. Preparing to unpack .../004-libglib2.0-0_2.78.1-1_riscv64.deb ... Unpacking libglib2.0-0:riscv64 (2.78.1-1) ... Selecting previously unselected package libicu72:riscv64. 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Setting up libclone-perl:riscv64 (0.46-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libsub-identify-perl (0.14-3) ... Setting up libglib2.0-0:riscv64 (2.78.1-1) ... No schema files found: doing nothing. Setting up unzip (6.0-28ubuntu1) ... Setting up libdebhelper-perl (13.11.7ubuntu1) ... Setting up libbrotli1:riscv64 (1.0.9-2build8) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up x11-common (1:7.7+23ubuntu2) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libtry-tiny-perl (0.31-2) ... Setting up libnghttp2-14:riscv64 (1.57.0-1) ... Setting up libmagic1:riscv64 (1:5.45-2) ... Setting up libdeflate0:riscv64 (1.18-1) ... Setting up gettext-base (0.21-13build1) ... Setting up m4 (1.4.19-4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up file (1:5.45-2) ... Setting up libjbig0:riscv64 (2.1-6.1ubuntu1) ... Setting up libpcre2-16-0:riscv64 (10.42-4) ... Setting up libsub-install-perl (0.929-1) ... Setting up libsasl2-modules-db:riscv64 (2.1.28+dfsg1-3) ... Setting up zip (3.0-13) ... Setting up libpackage-stash-xs-perl:riscv64 (0.30-1build1) ... Setting up autotools-dev (20220109.1) ... Setting up libpcre2-32-0:riscv64 (10.42-4) ... Setting up libblas3:riscv64 (3.11.0-2build1) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/riscv64-linux-gnu/libblas.so.3 (libblas.so.3-riscv64-linux-gnu) in auto mode Setting up libpkgconf3:riscv64 (1.8.1-2) ... Setting up libalgorithm-c3-perl (0.11-2) ... Setting up libswitch-perl (2.17-3) ... Setting up libfreetype6:riscv64 (2.13.2+dfsg-1) ... Setting up libx11-data (2:1.8.7-1) ... Setting up librtmp1:riscv64 (2.4+20151223.gitfa8646d.1-2build4) ... Setting up libncurses6:riscv64 (6.4+20231016-1) ... Setting up libfribidi0:riscv64 (1.0.13-3) ... Setting up libvariable-magic-perl (0.63-1) ... Setting up libio-html-perl (1.004-3) ... Setting up libtcl8.6:riscv64 (8.6.13+dfsg-2) ... Setting up autopoint (0.21-13build1) ... Setting up libb-hooks-op-check-perl:riscv64 (0.22-2build1) ... Setting up icu-devtools (72.1-3ubuntu3) ... Setting up ucf (3.0043+nmu1) ... Setting up pkgconf-bin (1.8.1-2) ... Setting up libjpeg-turbo8:riscv64 (2.1.5-2ubuntu1) ... Setting up libparams-util-perl (1.102-2) ... Setting up libsasl2-2:riscv64 (2.1.28+dfsg1-3) ... Setting up libssh-4:riscv64 (0.10.5-3ubuntu1) ... Setting up libgfortran5:riscv64 (13.2.0-4ubuntu3) ... Setting up autoconf (2.71-3) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libwebp7:riscv64 (1.3.2-0.3) ... Setting up libtimedate-perl (2.3300-2) ... Setting up liblzma-dev:riscv64 (5.4.4-0.1) ... Setting up libsub-name-perl:riscv64 (0.27-1) ... Setting up zlib1g-dev:riscv64 (1:1.2.13.dfsg-1ubuntu5) ... Setting up libpcre2-posix3:riscv64 (10.42-4) ... Setting up libuchardet0:riscv64 (0.0.7-1build2) ... Setting up libsub-override-perl (0.09-4) ... Setting up libharfbuzz0b:riscv64 (8.0.1-1) ... Setting up libthai-data (0.1.29-1build1) ... Setting up libdevel-globaldestruction-perl (0.14-4) ... Setting up libdevel-stacktrace-perl (2.0400-2) ... Setting up libgfortran-13-dev:riscv64 (13.2.0-4ubuntu3) ... Setting up libbsd0:riscv64 (0.11.7-4) ... Setting up libelf1:riscv64 (0.189-4) ... Setting up libicu-dev:riscv64 (72.1-3ubuntu3) ... Setting up libxml2:riscv64 (2.9.14+dfsg-1.3) ... Setting up fonts-noto-core (20201225-2) ... Setting up xdg-utils (1.1.3-4.1ubuntu3) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libldap2:riscv64 (2.6.6+dfsg-1~exp1ubuntu1) ... Setting up liburi-perl (5.21-1) ... Setting up libblas-dev:riscv64 (3.11.0-2build1) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/blas/libblas.so to provide /usr/lib/riscv64-linux-gnu/libblas.so (libblas.so-riscv64-linux-gnu) in auto mode Setting up dctrl-tools (2.24-3build2) ... Setting up libbz2-dev:riscv64 (1.0.8-5build1) ... Setting up libjpeg8:riscv64 (8c-2ubuntu11) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libpaper1:riscv64 (1.1.29) ... Creating config file /etc/papersize with new version Setting up libice6:riscv64 (2:1.0.10-1build2) ... Setting up libhttp-date-perl (6.05-2) ... Setting up libdw1:riscv64 (0.189-4) ... Setting up libjpeg-turbo8-dev:riscv64 (2.1.5-2ubuntu1) ... Setting up libxdmcp6:riscv64 (1:1.1.3-0ubuntu5) ... Setting up liblapack3:riscv64 (3.11.0-2build1) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/riscv64-linux-gnu/liblapack.so.3 (liblapack.so.3-riscv64-linux-gnu) in auto mode Setting up libncurses-dev:riscv64 (6.4+20231016-1) ... Setting up libxcb1:riscv64 (1.15-1) ... Setting up gettext (0.21-13build1) ... Setting up libpcre2-dev:riscv64 (10.42-4) ... Setting up libtool (2.4.7-7) ... Setting up libxcb-render0:riscv64 (1.15-1) ... Setting up fontconfig-config (2.14.2-4ubuntu1) ... Setting up libpng-dev:riscv64 (1.6.40-2) ... Setting up libcurl3-gnutls:riscv64 (8.2.1-1ubuntu3.1) ... Setting up libxcb-shm0:riscv64 (1.15-1) ... Setting up libpaper-utils (1.1.29) ... Setting up libclass-c3-perl (0.35-2) ... Setting up libreadline-dev:riscv64 (8.2-1.3) ... Setting up libdevel-callchecker-perl:riscv64 (0.008-2) ... Setting up pkgconf:riscv64 (1.8.1-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libthai0:riscv64 (0.1.29-1build1) ... Setting up gfortran-13 (13.2.0-4ubuntu3) ... Setting up liblapack-dev:riscv64 (3.11.0-2build1) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/lapack/liblapack.so to provide /usr/lib/riscv64-linux-gnu/liblapack.so (liblapack.so-riscv64-linux-gnu) in auto mode Setting up libdata-optlist-perl (0.114-1) ... Setting up pkg-config:riscv64 (1.8.1-2) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up libtiff6:riscv64 (4.5.1+git230720-1ubuntu1) ... Setting up debugedit (1:5.0-5) ... Setting up libcurl4:riscv64 (8.2.1-1ubuntu3.1) ... Setting up libx11-6:riscv64 (2:1.8.7-1) ... Setting up libfontconfig1:riscv64 (2.14.2-4ubuntu1) ... Setting up libmro-compat-perl (0.15-2) ... Setting up libjpeg8-dev:riscv64 (8c-2ubuntu11) ... Setting up libsm6:riscv64 (2:1.2.3-1build2) ... Setting up libxmuu1:riscv64 (2:1.1.3-3) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (6.44-2ubuntu1) ... Setting up libeval-closure-perl (0.14-3) ... Setting up fontconfig (2.14.2-4ubuntu1) ... Regenerating fonts cache... done. Setting up libxrender1:riscv64 (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libparams-classify-perl:riscv64 (0.015-2build2) ... Setting up libpango-1.0-0:riscv64 (1.51.0+ds-2) ... Setting up libjpeg-dev:riscv64 (8c-2ubuntu11) ... Setting up libxext6:riscv64 (2:1.3.4-1build1) ... Setting up libwww-curl-perl:riscv64 (4.17-10) ... Setting up man-db (2.12.0-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up gfortran (4:13.2.0-1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:riscv64 (1.18.0-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up libxt6:riscv64 (1:1.2.1-1.1) ... Setting up xauth (1:1.1.2-1) ... Setting up libxss1:riscv64 (1:1.2.3-1build2) ... Setting up libpangoft2-1.0-0:riscv64 (1.51.0+ds-2) ... Setting up libpangocairo-1.0-0:riscv64 (1.51.0+ds-2) ... Setting up libxft2:riscv64 (2.3.6-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libtk8.6:riscv64 (8.6.13-2) ... Setting up debhelper (13.11.7ubuntu1) ... Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up libclass-load-perl (0.25-2) ... Setting up r-base-core (4.3.1-4) ... Creating config file /etc/R/Renviron with new version Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-2build1) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up r-bioc-genomeinfodbdata (1.2.10-1) ... Setting up r-bioc-biocgenerics (0.46.0-1) ... Setting up r-base-dev (4.3.1-4) ... Setting up libmoose-perl:riscv64 (2.2206-1) ... Setting up r-cran-bitops (1.0-7-1) ... Setting up r-bioc-zlibbioc (1.46.0+dfsg-1) ... Setting up r-bioc-s4vectors (0.38.1+dfsg-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-bioc-iranges (2.34.1-1) ... Setting up r-cran-rcurl (1.98-1.12+dfsg-1) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up r-bioc-genomeinfodb (1.36.4+dfsg-1) ... Setting up r-bioc-xvector (0.40.0-1) ... Setting up dh-r (20230707ubuntu1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.38-3ubuntu1) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.13.0-1019-generic #21~20.04.1-Ubuntu SMP Thu Mar 24 22:36:01 UTC 2022 riscv64 (riscv64) Toolchain package versions: binutils_2.41-5ubuntu1 dpkg-dev_1.22.0ubuntu1 g++-13_13.2.0-4ubuntu3 gcc-13_13.2.0-4ubuntu3 libc6-dev_2.38-3ubuntu1 libstdc++-13-dev_13.2.0-4ubuntu3 libstdc++6_13.2.0-4ubuntu3 linux-libc-dev_6.5.0-9.9 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 apt_2.7.6 apt-utils_2.7.6 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13build1 autotools-dev_20220109.1 base-files_13ubuntu3 base-passwd_3.6.2 bash_5.2.15-2ubuntu1 bash-completion_1:2.11-8 binutils_2.41-5ubuntu1 binutils-common_2.41-5ubuntu1 binutils-riscv64-linux-gnu_2.41-5ubuntu1 bsdextrautils_2.39.1-4ubuntu2 bsdutils_1:2.39.1-4ubuntu2 build-essential_12.10ubuntu1 bzip2_1.0.8-5build1 ca-certificates_20230311ubuntu1 coreutils_9.1-1ubuntu2 cpp_4:13.2.0-1ubuntu1 cpp-13_13.2.0-4ubuntu3 dash_0.5.12-6ubuntu1 dctrl-tools_2.24-3build2 debconf_1.5.82 debconf-i18n_1.5.82 debhelper_13.11.7ubuntu1 debianutils_5.14 debugedit_1:5.0-5 dh-autoreconf_20 dh-r_20230707ubuntu1 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.0ubuntu1 dpkg-dev_1.22.0ubuntu1 dwz_0.15-1 e2fsprogs_1.47.0-2ubuntu1 fakeroot_1.32.1-1 file_1:5.45-2 findutils_4.9.0-5 fontconfig_2.14.2-4ubuntu1 fontconfig-config_2.14.2-4ubuntu1 fonts-noto-core_20201225-2 fonts-noto-mono_20201225-2 g++_4:13.2.0-1ubuntu1 g++-13_13.2.0-4ubuntu3 gcc_4:13.2.0-1ubuntu1 gcc-13_13.2.0-4ubuntu3 gcc-13-base_13.2.0-4ubuntu3 gettext_0.21-13build1 gettext-base_0.21-13build1 gfortran_4:13.2.0-1ubuntu1 gfortran-13_13.2.0-4ubuntu3 gpg_2.2.40-1.1ubuntu1 gpg-agent_2.2.40-1.1ubuntu1 gpgconf_2.2.40-1.1ubuntu1 gpgv_2.2.40-1.1ubuntu1 grep_3.11-3 groff-base_1.23.0-3 gzip_1.12-1ubuntu1 hostname_3.23+nmu1ubuntu1 icu-devtools_72.1-3ubuntu3 init_1.65.2ubuntu1 init-system-helpers_1.65.2ubuntu1 intltool-debian_0.35.0+20060710.6 krb5-locales_1.20.1-3ubuntu1 libacl1_2.3.1-3 libalgorithm-c3-perl_0.11-2 libapparmor1_4.0.0~alpha2-0ubuntu5 libapt-pkg6.0_2.7.6 libarchive-zip-perl_1.68-1 libargon2-1_0~20190702+dfsg-3 libasan8_13.2.0-4ubuntu3 libassuan0_2.5.6-1 libatomic1_13.2.0-4ubuntu3 libattr1_1:2.5.1-4 libaudit-common_1:3.1.1-1 libaudit1_1:3.1.1-1 libb-hooks-endofscope-perl_0.26-1 libb-hooks-op-check-perl_0.22-2build1 libbinutils_2.41-5ubuntu1 libblas-dev_3.11.0-2build1 libblas3_3.11.0-2build1 libblkid1_2.39.1-4ubuntu2 libbrotli1_1.0.9-2build8 libbsd0_0.11.7-4 libbz2-1.0_1.0.8-5build1 libbz2-dev_1.0.8-5build1 libc-bin_2.38-3ubuntu1 libc-dev-bin_2.38-3ubuntu1 libc6_2.38-3ubuntu1 libc6-dev_2.38-3ubuntu1 libcairo2_1.18.0-1 libcap-ng0_0.8.3-1build2 libcap2_1:2.66-4ubuntu1 libcc1-0_13.2.0-4ubuntu3 libclass-c3-perl_0.35-2 libclass-load-perl_0.25-2 libclass-load-xs-perl_0.10-2build1 libclone-perl_0.46-1 libcom-err2_1.47.0-2ubuntu1 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libcryptsetup12_2:2.6.1-4ubuntu3 libctf-nobfd0_2.41-5ubuntu1 libctf0_2.41-5ubuntu1 libcurl3-gnutls_8.2.1-1ubuntu3.1 libcurl4_8.2.1-1ubuntu3.1 libdata-optlist-perl_0.114-1 libdatrie1_0.2.13-2 libdb5.3_5.3.28+dfsg2-2 libdebconfclient0_0.270ubuntu1 libdebhelper-perl_13.11.7ubuntu1 libdeflate0_1.18-1 libdevel-callchecker-perl_0.008-2 libdevel-globaldestruction-perl_0.14-4 libdevel-overloadinfo-perl_0.007-1 libdevel-stacktrace-perl_2.0400-2 libdevmapper1.02.1_2:1.02.185-2ubuntu1 libdist-checkconflicts-perl_0.11-2 libdpkg-perl_1.22.0ubuntu1 libdw1_0.189-4 libdynaloader-functions-perl_0.003-3 libelf1_0.189-4 libencode-locale-perl_1.05-3 libeval-closure-perl_0.14-3 libexpat1_2.5.0-2 libext2fs2_1.47.0-2ubuntu1 libfakeroot_1.32.1-1 libfdisk1_2.39.1-4ubuntu2 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libfontconfig1_2.14.2-4ubuntu1 libfreetype6_2.13.2+dfsg-1 libfribidi0_1.0.13-3 libgcc-13-dev_13.2.0-4ubuntu3 libgcc-s1_13.2.0-4ubuntu3 libgcrypt20_1.10.2-3ubuntu1 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgfortran-13-dev_13.2.0-4ubuntu3 libgfortran5_13.2.0-4ubuntu3 libglib2.0-0_2.78.1-1 libgmp10_2:6.3.0+dfsg-2ubuntu4 libgnutls30_3.8.1-4ubuntu3 libgomp1_13.2.0-4ubuntu3 libgpg-error-l10n_1.47-2 libgpg-error0_1.47-2 libgpm2_1.20.7-10build1 libgraphite2-3_1.3.14-1build2 libgssapi-krb5-2_1.20.1-3ubuntu1 libharfbuzz0b_8.0.1-1 libhogweed6_3.9.1-2 libhttp-date-perl_6.05-2 libhttp-message-perl_6.44-2ubuntu1 libice6_2:1.0.10-1build2 libicu-dev_72.1-3ubuntu3 libicu72_72.1-3ubuntu3 libidn2-0_2.3.4-1build1 libio-html-perl_1.004-3 libip4tc2_1.8.9-2ubuntu2 libisl23_0.26-3 libjansson4_2.14-2 libjbig0_2.1-6.1ubuntu1 libjpeg-dev_8c-2ubuntu11 libjpeg-turbo8_2.1.5-2ubuntu1 libjpeg-turbo8-dev_2.1.5-2ubuntu1 libjpeg8_8c-2ubuntu11 libjpeg8-dev_8c-2ubuntu11 libjson-c5_0.17-1 libk5crypto3_1.20.1-3ubuntu1 libkeyutils1_1.6.3-2 libkmod2_30+20230519-1ubuntu3 libkrb5-3_1.20.1-3ubuntu1 libkrb5support0_1.20.1-3ubuntu1 liblapack-dev_3.11.0-2build1 liblapack3_3.11.0-2build1 libldap2_2.6.6+dfsg-1~exp1ubuntu1 liblerc4_4.0.0+ds-2ubuntu2 liblocale-gettext-perl_1.07-6 liblockfile-bin_1.17-1build2 liblockfile1_1.17-1build2 liblwp-mediatypes-perl_6.04-2 liblz4-1_1.9.4-1 liblzma-dev_5.4.4-0.1 liblzma5_5.4.4-0.1 libmagic-mgc_1:5.45-2 libmagic1_1:5.45-2 libmd0_1.1.0-1 libmodule-implementation-perl_0.09-2 libmodule-runtime-conflicts-perl_0.003-2 libmodule-runtime-perl_0.016-2 libmoose-perl_2.2206-1 libmount1_2.39.1-4ubuntu2 libmpc3_1.3.1-1 libmpfr6_4.2.1-1 libmro-compat-perl_0.15-2 libnamespace-clean-perl_0.27-2 libncurses-dev_6.4+20231016-1 libncurses6_6.4+20231016-1 libncursesw6_6.4+20231016-1 libnettle8_3.9.1-2 libnghttp2-14_1.57.0-1 libnpth0_1.6-3build2 libnsl-dev_1.3.0-3 libnsl2_1.3.0-3 libnss-nis_3.1-0ubuntu6 libnss-nisplus_1.3-0ubuntu6 libp11-kit0_0.25.0-4ubuntu1 libpackage-deprecationmanager-perl_0.18-1 libpackage-stash-perl_0.40-1 libpackage-stash-xs-perl_0.30-1build1 libpam-modules_1.5.2-6ubuntu1 libpam-modules-bin_1.5.2-6ubuntu1 libpam-runtime_1.5.2-6ubuntu1 libpam0g_1.5.2-6ubuntu1 libpango-1.0-0_1.51.0+ds-2 libpangocairo-1.0-0_1.51.0+ds-2 libpangoft2-1.0-0_1.51.0+ds-2 libpaper-utils_1.1.29 libpaper1_1.1.29 libparams-classify-perl_0.015-2build2 libparams-util-perl_1.102-2 libpcre2-16-0_10.42-4 libpcre2-32-0_10.42-4 libpcre2-8-0_10.42-4 libpcre2-dev_10.42-4 libpcre2-posix3_10.42-4 libperl5.36_5.36.0-9ubuntu1 libpipeline1_1.5.7-1 libpixman-1-0_0.42.2-1 libpkgconf3_1.8.1-2 libpng-dev_1.6.40-2 libpng16-16_1.6.40-2 libproc2-0_2:4.0.3-1ubuntu1 libpsl5_0.21.2-1build1 libreadline-dev_8.2-1.3 libreadline8_8.2-1.3 librtmp1_2.4+20151223.gitfa8646d.1-2build4 libsasl2-2_2.1.28+dfsg1-3 libsasl2-modules-db_2.1.28+dfsg1-3 libseccomp2_2.5.4-1ubuntu3 libselinux1_3.5-1 libsemanage-common_3.5-1 libsemanage2_3.5-1 libsepol2_3.5-1 libsframe1_2.41-5ubuntu1 libsharpyuv0_1.3.2-0.3 libsm6_2:1.2.3-1build2 libsmartcols1_2.39.1-4ubuntu2 libsqlite3-0_3.43.2-1 libss2_1.47.0-2ubuntu1 libssh-4_0.10.5-3ubuntu1 libssl3_3.0.10-1ubuntu2.1 libstdc++-13-dev_13.2.0-4ubuntu3 libstdc++6_13.2.0-4ubuntu3 libsub-exporter-perl_0.990-1 libsub-exporter-progressive-perl_0.001013-3 libsub-identify-perl_0.14-3 libsub-install-perl_0.929-1 libsub-name-perl_0.27-1 libsub-override-perl_0.09-4 libswitch-perl_2.17-3 libsystemd-shared_253.5-1ubuntu7 libsystemd0_253.5-1ubuntu7 libtasn1-6_4.19.0-3 libtcl8.6_8.6.13+dfsg-2 libtext-charwidth-perl_0.04-11 libtext-iconv-perl_1.7-8 libtext-wrapi18n-perl_0.06-10 libthai-data_0.1.29-1build1 libthai0_0.1.29-1build1 libtiff6_4.5.1+git230720-1ubuntu1 libtimedate-perl_2.3300-2 libtinfo6_6.4+20231016-1 libtirpc-common_1.3.3+ds-1 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optipng_0.7.7-3 passwd_1:4.13+dfsg1-1ubuntu1 patch_2.7.6-7build2 perl_5.36.0-9ubuntu1 perl-base_5.36.0-9ubuntu1 perl-modules-5.36_5.36.0-9ubuntu1 pinentry-curses_1.2.1-1ubuntu1 pkg-config_1.8.1-2 pkgbinarymangler_154 pkgconf_1.8.1-2 pkgconf-bin_1.8.1-2 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:4.0.3-1ubuntu1 psmisc_23.6-1 r-base-core_4.3.1-4 r-base-dev_4.3.1-4 r-bioc-biocgenerics_0.46.0-1 r-bioc-genomeinfodb_1.36.4+dfsg-1 r-bioc-genomeinfodbdata_1.2.10-1 r-bioc-iranges_2.34.1-1 r-bioc-s4vectors_0.38.1+dfsg-1 r-bioc-xvector_0.40.0-1 r-bioc-zlibbioc_1.46.0+dfsg-1 r-cran-bitops_1.0-7-1 r-cran-rcurl_1.98-1.12+dfsg-1 readline-common_8.2-1.3 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 systemd_253.5-1ubuntu7 systemd-dev_253.5-1ubuntu7 systemd-sysv_253.5-1ubuntu7 sysvinit-utils_3.07-1ubuntu1 tar_1.34+dfsg-1.2ubuntu1 tzdata_2023c-9ubuntu1 ubuntu-keyring_2021.03.26 ucf_3.0043+nmu1 unzip_6.0-28ubuntu1 usrmerge_35ubuntu1 util-linux_2.39.1-4ubuntu2 uuid-runtime_2.39.1-4ubuntu2 x11-common_1:7.7+23ubuntu2 xauth_1:1.1.2-1 xdg-utils_1.1.3-4.1ubuntu3 xz-utils_5.4.4-0.1 zip_3.0-13 zlib1g_1:1.2.13.dfsg-1ubuntu5 zlib1g-dev_1:1.2.13.dfsg-1ubuntu5 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-genomicranges Binary: r-bioc-genomicranges Architecture: any Version: 1.52.1+dfsg-1 Maintainer: Debian R Packages Maintainers Uploaders: Andreas Tille Homepage: https://bioconductor.org/packages/GenomicRanges/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-genomicranges Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-genomicranges.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.37.0), r-bioc-s4vectors, r-bioc-iranges (>= 2.31.2), r-bioc-genomeinfodb, r-bioc-xvector Package-List: r-bioc-genomicranges deb gnu-r optional arch=any Checksums-Sha1: 23359da02fc2fdb93ad69ebb2b97f37f2f676b48 805444 r-bioc-genomicranges_1.52.1+dfsg.orig.tar.xz c55fa279708841098af848863f5e5c6b84c61e51 5980 r-bioc-genomicranges_1.52.1+dfsg-1.debian.tar.xz Checksums-Sha256: 6b0cb1d1db0ed2efbfa7b5bdb7a55143098419e5f4e9405faad56257f0b5277c 805444 r-bioc-genomicranges_1.52.1+dfsg.orig.tar.xz 2558d5aafa2851c4e4beea9bf9d9ce46eba6a37366109f622b8c0439ad43db2f 5980 r-bioc-genomicranges_1.52.1+dfsg-1.debian.tar.xz Files: 577919744e61e1e18de5256e4329dd6a 805444 r-bioc-genomicranges_1.52.1+dfsg.orig.tar.xz 3cc8fff6652b9d496371440142be78b6 5980 r-bioc-genomicranges_1.52.1+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmUpRwwRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHO5g/9EZwfo8xTRKIosVmvtEPkNnUtxPxyBIqb 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signature found dpkg-source: info: extracting r-bioc-genomicranges in /<> dpkg-source: info: unpacking r-bioc-genomicranges_1.52.1+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-genomicranges_1.52.1+dfsg-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=8 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-26922058 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-26922058 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-26922058 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package r-bioc-genomicranges dpkg-buildpackage: info: source version 1.52.1+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary-arch dh binary-arch --buildsystem R dh_update_autotools_config -a -O--buildsystem=R dh_autoreconf -a -O--buildsystem=R dh_auto_configure -a -O--buildsystem=R dh_auto_build -a -O--buildsystem=R dh: command-omitted: The call to "dh_auto_test -a -O--buildsystem=R" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=R dh_prep -a -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-genomicranges/ -a -O--buildsystem=R I: R Package: GenomicRanges Version: 1.52.1 I: Building using R version 4.3.1-4 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Fri, 13 Oct 2023 15:27:21 +0200 mkdir -p /<>/r-bioc-genomicranges-1.52.1\+dfsg/debian/r-bioc-genomicranges/usr/lib/R/site-library R CMD INSTALL -l /<>/r-bioc-genomicranges-1.52.1\+dfsg/debian/r-bioc-genomicranges/usr/lib/R/site-library --clean . "--built-timestamp='Fri, 13 Oct 2023 15:27:21 +0200'" * installing *source* package ‘GenomicRanges’ ... ** using staged installation ** libs using C compiler: ‘gcc (Ubuntu 13.2.0-4ubuntu3) 13.2.0’ make[1]: Entering directory '/<>/src' gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-JdFE7e/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/build/r-base-JdFE7e/r-base-4.3.1=/usr/src/r-base-4.3.1-4 -Wdate-time -D_FORTIFY_SOURCE=2 -c IRanges_stubs.c -o IRanges_stubs.o gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-JdFE7e/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/build/r-base-JdFE7e/r-base-4.3.1=/usr/src/r-base-4.3.1-4 -Wdate-time -D_FORTIFY_SOURCE=2 -c R_init_GenomicRanges.c -o R_init_GenomicRanges.o gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-JdFE7e/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/build/r-base-JdFE7e/r-base-4.3.1=/usr/src/r-base-4.3.1-4 -Wdate-time -D_FORTIFY_SOURCE=2 -c S4Vectors_stubs.c -o S4Vectors_stubs.o gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-JdFE7e/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/build/r-base-JdFE7e/r-base-4.3.1=/usr/src/r-base-4.3.1-4 -Wdate-time -D_FORTIFY_SOURCE=2 -c transcript_utils.c -o transcript_utils.o gcc -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o GenomicRanges.so IRanges_stubs.o R_init_GenomicRanges.o S4Vectors_stubs.o transcript_utils.o -L/usr/lib/R/lib -lR make[1]: Leaving directory '/<>/src' make[1]: Entering directory '/<>/src' make[1]: Leaving directory '/<>/src' installing to /<>/debian/r-bioc-genomicranges/usr/lib/R/site-library/00LOCK-r-bioc-genomicranges-1.52.1+dfsg/00new/GenomicRanges/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GenomicRanges) Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 299. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 301. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 302. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 305. W: Ignoring specified R dependency: R (>= 4.0.0) I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.37.0) I: Using r-bioc-s4vectors for Depends:S4Vectors (>= 0.27.12) I: Using r-bioc-iranges for Depends:IRanges (>= 2.31.2) I: Using r-bioc-genomeinfodb for Depends:GenomeInfoDb (>= 1.15.2) I: Using r-cran-matrix for Suggests:Matrix I: Using r-bioc-biobase for Suggests:Biobase I: Using r-bioc-annotationdbi for Suggests:AnnotationDbi I: Using r-bioc-annotate for Suggests:annotate I: Using r-bioc-biostrings for Suggests:Biostrings (>= 2.25.3) I: Using r-bioc-summarizedexperiment for Suggests:SummarizedExperiment (>= 0.1.5) I: Using r-bioc-rsamtools for Suggests:Rsamtools (>= 1.13.53) I: Using r-bioc-genomicalignments for Suggests:GenomicAlignments I: Using r-bioc-rtracklayer for Suggests:rtracklayer I: Using r-bioc-bsgenome for Suggests:BSgenome I: Using r-bioc-genomicfeatures for Suggests:GenomicFeatures I: Using r-bioc-gviz for Suggests:Gviz I: Using r-bioc-variantannotation for Suggests:VariantAnnotation I: Using r-bioc-annotationhub for Suggests:AnnotationHub I: Using r-bioc-deseq2 for Suggests:DESeq2 I: Using r-bioc-dexseq for Suggests:DEXSeq I: Using r-bioc-edger for Suggests:edgeR W: Cannot find a debian package for Suggests:KEGGgraph W: Cannot find a debian package for Suggests:RNAseqData.HNRNPC.bam.chr14 W: Cannot find a debian package for Suggests:pasillaBamSubset I: Using r-bioc-keggrest for Suggests:KEGGREST W: Cannot find a debian package for Suggests:hgu95av2.db W: Cannot find a debian package for Suggests:hgu95av2probe W: Cannot find a debian package for Suggests:BSgenome.Scerevisiae.UCSC.sacCer2 W: Cannot find a debian package for Suggests:BSgenome.Hsapiens.UCSC.hg19 W: Cannot find a debian package for Suggests:BSgenome.Mmusculus.UCSC.mm10 W: Cannot find a debian package for Suggests:TxDb.Athaliana.BioMart.plantsmart22 W: Cannot find a debian package for Suggests:TxDb.Dmelanogaster.UCSC.dm3.ensGene W: Cannot find a debian package for Suggests:TxDb.Hsapiens.UCSC.hg19.knownGene W: Cannot find a debian package for Suggests:TxDb.Mmusculus.UCSC.mm10.knownGene I: Using r-cran-runit for Suggests:RUnit I: Using r-cran-digest for Suggests:digest I: Using r-cran-knitr for Suggests:knitr I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-bioc-biocstyle for Suggests:BiocStyle I: Using r-bioc-xvector for Imports:XVector (>= 0.29.2) I: Using r-bioc-s4vectors for LinkingTo:S4Vectors I: Using r-bioc-iranges for LinkingTo:IRanges I: BioConductor API version: r-api-bioc-3.17 I: Use r-bioc-genomicranges as Debian binary package for variables substitution dh_installdocs -a -O--buildsystem=R dh_installchangelogs -a -O--buildsystem=R dh_installsystemduser -a -O--buildsystem=R dh_perl -a -O--buildsystem=R dh_link -a -O--buildsystem=R dh_strip_nondeterminism -a -O--buildsystem=R dh_compress -a -O--buildsystem=R dh_fixperms -a -O--buildsystem=R dh_missing -a -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R 81fb1343ecbbdd2a2ab5fbced46df36092afc978 dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -a -O--buildsystem=R dh_gencontrol -a -O--buildsystem=R dh_md5sums -a -O--buildsystem=R dh_builddeb -a -O--buildsystem=R INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing r-bioc-genomicranges (in debian/r-bioc-genomicranges); do_strip: , oemstrip: pkgstriptranslations: processing r-bioc-genomicranges-dbgsym (in debian/.debhelper/r-bioc-genomicranges/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-bioc-genomicranges/DEBIAN/control, package r-bioc-genomicranges, directory debian/r-bioc-genomicranges pkgstripfiles: processing control file: debian/.debhelper/r-bioc-genomicranges/dbgsym-root/DEBIAN/control, package r-bioc-genomicranges-dbgsym, directory debian/.debhelper/r-bioc-genomicranges/dbgsym-root dpkg-deb: building package 'r-bioc-genomicranges-dbgsym' in 'debian/.debhelper/scratch-space/build-r-bioc-genomicranges/r-bioc-genomicranges-dbgsym_1.52.1+dfsg-1_riscv64.deb'. pkgstripfiles: Running PNG optimization (using 8 cpus) for package r-bioc-genomicranges ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-bioc-genomicranges' in '../r-bioc-genomicranges_1.52.1+dfsg-1_riscv64.deb'. Renaming r-bioc-genomicranges-dbgsym_1.52.1+dfsg-1_riscv64.deb to r-bioc-genomicranges-dbgsym_1.52.1+dfsg-1_riscv64.ddeb dpkg-genbuildinfo --build=any -O../r-bioc-genomicranges_1.52.1+dfsg-1_riscv64.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../r-bioc-genomicranges_1.52.1+dfsg-1_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-10-28T21:59:04Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-bioc-genomicranges_1.52.1+dfsg-1_riscv64.changes: --------------------------------------------------- Format: 1.8 Date: Fri, 13 Oct 2023 15:27:21 +0200 Source: r-bioc-genomicranges Binary: r-bioc-genomicranges Built-For-Profiles: noudeb Architecture: riscv64 Version: 1.52.1+dfsg-1 Distribution: noble-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: r-bioc-genomicranges - BioConductor representation and manipulation of genomic intervals Changes: r-bioc-genomicranges (1.52.1+dfsg-1) unstable; urgency=medium . * New upstream version Checksums-Sha1: 782cbdc53463585beefa6a7d1ca0a1f4252557fe 33738 r-bioc-genomicranges-dbgsym_1.52.1+dfsg-1_riscv64.ddeb c50f806fc0910aae831f37916dac46ebabfe9961 10777 r-bioc-genomicranges_1.52.1+dfsg-1_riscv64.buildinfo d9e6935dfab206974d386d0f14abf51ec668156b 1819118 r-bioc-genomicranges_1.52.1+dfsg-1_riscv64.deb Checksums-Sha256: 65b40c2f825f6dacae49de3e24907b690f27ab10db0d9e2a98fdaed663b27f79 33738 r-bioc-genomicranges-dbgsym_1.52.1+dfsg-1_riscv64.ddeb 4d83e904b4555a1a8e3399b9f31e48c522348326ef0bc15d7f5f50cf60d06d36 10777 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1.52.1+dfsg-1 Checksums-Md5: 1097da6a391cb646df5168559985d5b7 33738 r-bioc-genomicranges-dbgsym_1.52.1+dfsg-1_riscv64.ddeb 3e332e1be7f6c45bb236190c1dd4ff39 1819118 r-bioc-genomicranges_1.52.1+dfsg-1_riscv64.deb Checksums-Sha1: 782cbdc53463585beefa6a7d1ca0a1f4252557fe 33738 r-bioc-genomicranges-dbgsym_1.52.1+dfsg-1_riscv64.ddeb d9e6935dfab206974d386d0f14abf51ec668156b 1819118 r-bioc-genomicranges_1.52.1+dfsg-1_riscv64.deb Checksums-Sha256: 65b40c2f825f6dacae49de3e24907b690f27ab10db0d9e2a98fdaed663b27f79 33738 r-bioc-genomicranges-dbgsym_1.52.1+dfsg-1_riscv64.ddeb a6439cf783b6d6a3b030b005cc814cc7b506eb2cda7c0932fa83799ad663b93a 1819118 r-bioc-genomicranges_1.52.1+dfsg-1_riscv64.deb Build-Origin: Ubuntu Build-Architecture: riscv64 Build-Date: Sat, 28 Oct 2023 21:58:56 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-13build1), autotools-dev (= 20220109.1), 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1.3.4.20230808-1), ncurses-base (= 6.4+20231016-1), ncurses-bin (= 6.4+20231016-1), openssl (= 3.0.10-1ubuntu2.1), patch (= 2.7.6-7build2), perl (= 5.36.0-9ubuntu1), perl-base (= 5.36.0-9ubuntu1), perl-modules-5.36 (= 5.36.0-9ubuntu1), pkg-config (= 1.8.1-2), pkgconf (= 1.8.1-2), pkgconf-bin (= 1.8.1-2), po-debconf (= 1.0.21+nmu1), r-base-core (= 4.3.1-4), r-base-dev (= 4.3.1-4), r-bioc-biocgenerics (= 0.46.0-1), r-bioc-genomeinfodb (= 1.36.4+dfsg-1), r-bioc-genomeinfodbdata (= 1.2.10-1), r-bioc-iranges (= 2.34.1-1), r-bioc-s4vectors (= 0.38.1+dfsg-1), r-bioc-xvector (= 0.40.0-1), r-bioc-zlibbioc (= 1.46.0+dfsg-1), r-cran-bitops (= 1.0-7-1), r-cran-rcurl (= 1.98-1.12+dfsg-1), readline-common (= 8.2-1.3), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.9-1), sensible-utils (= 0.0.20), sysvinit-utils (= 3.07-1ubuntu1), tar (= 1.34+dfsg-1.2ubuntu1), tzdata (= 2023c-9ubuntu1), ucf (= 3.0043+nmu1), unzip (= 6.0-28ubuntu1), util-linux (= 2.39.1-4ubuntu2), x11-common (= 1:7.7+23ubuntu2), xauth (= 1:1.1.2-1), xdg-utils (= 1.1.3-4.1ubuntu3), xz-utils (= 5.4.4-0.1), zip (= 3.0-13), zlib1g (= 1:1.2.13.dfsg-1ubuntu5), zlib1g-dev (= 1:1.2.13.dfsg-1ubuntu5) Environment: DEB_BUILD_OPTIONS="nocheck parallel=8" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1697203641" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-bioc-genomicranges_1.52.1+dfsg-1_riscv64.deb ---------------------------------------------- new Debian package, version 2.0. size 1819118 bytes: control archive=2519 bytes. 1443 bytes, 17 lines control 5251 bytes, 55 lines md5sums Package: r-bioc-genomicranges Version: 1.52.1+dfsg-1 Architecture: riscv64 Maintainer: Ubuntu Developers Original-Maintainer: Debian R Packages Maintainers Installed-Size: 2779 Depends: r-api-4.0, r-api-bioc-3.17, r-bioc-biocgenerics (>= 0.37.0), r-bioc-s4vectors (>= 0.27.12), r-bioc-iranges (>= 2.31.2), r-bioc-genomeinfodb (>= 1.15.2), r-bioc-xvector (>= 0.29.2), libc6 (>= 2.27) Suggests: r-cran-matrix, r-bioc-biobase, r-bioc-annotationdbi, r-bioc-annotate, r-bioc-biostrings (>= 2.25.3), r-bioc-summarizedexperiment (>= 0.1.5), r-bioc-rsamtools (>= 1.13.53), r-bioc-genomicalignments, r-bioc-rtracklayer, r-bioc-bsgenome, r-bioc-genomicfeatures, r-bioc-gviz, r-bioc-variantannotation, r-bioc-annotationhub, r-bioc-deseq2, r-bioc-dexseq, r-bioc-edger, r-bioc-keggrest, r-cran-runit, r-cran-digest, r-cran-knitr, r-cran-rmarkdown, r-bioc-biocstyle Section: gnu-r Priority: optional Homepage: https://bioconductor.org/packages/GenomicRanges/ Description: BioConductor representation and manipulation of genomic intervals The ability to efficiently store genomic annotations and alignments is playing a central role when it comes to analyze high-throughput sequencing data (a.k.a. NGS data). The package defines general purpose containers for storing genomic intervals as well as more specialized containers for storing alignments against a reference genome. drwxr-xr-x root/root 0 2023-10-13 13:27 ./ drwxr-xr-x root/root 0 2023-10-13 13:27 ./usr/ drwxr-xr-x root/root 0 2023-10-13 13:27 ./usr/lib/ drwxr-xr-x root/root 0 2023-10-13 13:27 ./usr/lib/R/ drwxr-xr-x root/root 0 2023-10-13 13:27 ./usr/lib/R/site-library/ drwxr-xr-x root/root 0 2023-10-13 13:27 ./usr/lib/R/site-library/GenomicRanges/ -rw-r--r-- root/root 940 2023-10-13 13:27 ./usr/lib/R/site-library/GenomicRanges/CITATION -rw-r--r-- root/root 3347 2023-10-13 13:27 ./usr/lib/R/site-library/GenomicRanges/DESCRIPTION -rw-r--r-- root/root 1984 2023-10-13 13:27 ./usr/lib/R/site-library/GenomicRanges/INDEX drwxr-xr-x root/root 0 2023-10-13 13:27 ./usr/lib/R/site-library/GenomicRanges/Meta/ -rw-r--r-- root/root 3143 2023-10-13 13:27 ./usr/lib/R/site-library/GenomicRanges/Meta/Rd.rds -rw-r--r-- root/root 123 2023-10-13 13:27 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13:27 ./usr/lib/R/site-library/GenomicRanges/unitTests/test_setops-methods.R drwxr-xr-x root/root 0 2023-10-13 13:27 ./usr/share/ drwxr-xr-x root/root 0 2023-10-13 13:27 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-10-13 13:27 ./usr/share/doc/r-bioc-genomicranges/ -rw-r--r-- root/root 859 2023-10-13 13:27 ./usr/share/doc/r-bioc-genomicranges/changelog.Debian.gz -rw-r--r-- root/root 5382 2023-10-13 13:27 ./usr/share/doc/r-bioc-genomicranges/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: riscv64 Build Type: any Build-Space: 6980 Build-Time: 483 Distribution: noble-proposed Host Architecture: riscv64 Install-Time: 355 Job: r-bioc-genomicranges_1.52.1+dfsg-1.dsc Machine Architecture: riscv64 Package: r-bioc-genomicranges Package-Time: 862 Source-Version: 1.52.1+dfsg-1 Space: 6980 Status: successful Version: 1.52.1+dfsg-1 -------------------------------------------------------------------------------- Finished at 2023-10-28T21:59:04Z Build needed 00:14:22, 6980k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-26922058 Scanning for processes to kill in build PACKAGEBUILD-26922058 RUN: /usr/share/launchpad-buildd/bin/in-target umount-chroot --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-26922058 Stopping target for build PACKAGEBUILD-26922058 RUN: /usr/share/launchpad-buildd/bin/in-target remove-build --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-26922058 Removing build PACKAGEBUILD-26922058