https://launchpad.net/ubuntu/+source/r-bioc-gosemsim/2.20.0-1/+build/22451844 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lcy01-amd64-022 4.15.0-162-generic #170-Ubuntu SMP Mon Oct 18 11:38:05 UTC 2021 x86_64 Buildd toolchain package versions: launchpad-buildd_204~508~ubuntu18.04.1 python3-lpbuildd_204~508~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.9 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 26 Nov 06:33:27 ntpdate[1762]: adjust time server 10.211.37.1 offset 0.013048 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=jammy --arch=amd64 PACKAGEBUILD-22451844 --image-type chroot /home/buildd/filecache-default/b0c128df17a460089eca69348f06144377489985 Creating target for build PACKAGEBUILD-22451844 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=jammy --arch=amd64 PACKAGEBUILD-22451844 Starting target for build PACKAGEBUILD-22451844 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=jammy --arch=amd64 PACKAGEBUILD-22451844 'deb http://ftpmaster.internal/ubuntu jammy main universe' 'deb http://ftpmaster.internal/ubuntu jammy-security main universe' 'deb http://ftpmaster.internal/ubuntu jammy-updates main universe' 'deb http://ftpmaster.internal/ubuntu jammy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-22451844 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=jammy --arch=amd64 PACKAGEBUILD-22451844 Updating target for build PACKAGEBUILD-22451844 Get:1 http://ftpmaster.internal/ubuntu jammy InRelease [270 kB] Get:2 http://ftpmaster.internal/ubuntu jammy-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed InRelease [121 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main amd64 Packages [1399 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main Translation-en [511 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/universe amd64 Packages [13.3 MB] Get:8 http://ftpmaster.internal/ubuntu jammy/universe Translation-en [5556 kB] Get:9 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 Packages [174 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main Translation-en [60.6 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/universe amd64 Packages [925 kB] Get:12 http://ftpmaster.internal/ubuntu jammy-proposed/universe Translation-en [431 kB] Fetched 22.9 MB in 6s (3774 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libsepol1 Use 'sudo apt autoremove' to remove it. The following packages will be REMOVED: libsemanage1* The following NEW packages will be installed: libsemanage2 libsepol2 libssl3 The following packages will be upgraded: apt base-files binutils binutils-common binutils-x86-64-linux-gnu bsdutils ca-certificates cpp-11 dash debconf debianutils e2fsprogs g++-11 gcc-11 gcc-11-base gpg gpg-agent gpgconf gpgv grep libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libattr1 libbinutils libblkid1 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libext2fs2 libgcc-11-dev libgcc-s1 libgcrypt20 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libidn2-0 libip4tc2 libisl23 libitm1 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 liblsan0 libmount1 libmpc3 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libquadmath0 libseccomp2 libselinux1 libsemanage-common libsmartcols1 libsqlite3-0 libss2 libstdc++-11-dev libstdc++6 libtasn1-6 libtinfo6 libtsan0 libubsan1 libuuid1 libzstd1 linux-libc-dev lockfile-progs login logsave make mount ncurses-base ncurses-bin openssl passwd pkgbinarymangler sed sensible-utils tzdata usrmerge util-linux 93 upgraded, 3 newly installed, 1 to remove and 0 not upgraded. Need to get 75.7 MB of archives. After this operation, 355 MB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu jammy/main amd64 debconf all 1.5.79 [126 kB] Get:2 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libpam0g amd64 1.4.0-10ubuntu1 [61.4 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libcrypt-dev amd64 1:4.4.26-1 [112 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libcrypt1 amd64 1:4.4.26-1 [82.1 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main amd64 base-files amd64 12ubuntu2 [63.3 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main amd64 bsdutils amd64 1:2.37.2-4ubuntu1 [80.9 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/main amd64 debianutils amd64 5.5-1 [77.5 kB] Get:8 http://ftpmaster.internal/ubuntu jammy/main amd64 dash amd64 0.5.11+git20210903+057cd650a4ed-3 [91.8 kB] Get:9 http://ftpmaster.internal/ubuntu jammy/main amd64 grep amd64 3.7-1 [156 kB] Get:10 http://ftpmaster.internal/ubuntu jammy/main amd64 login amd64 1:4.8.1-1ubuntu10 [188 kB] Get:11 http://ftpmaster.internal/ubuntu jammy/main amd64 libncurses6 amd64 6.3-1 [111 kB] Get:12 http://ftpmaster.internal/ubuntu jammy/main amd64 libncursesw6 amd64 6.3-1 [147 kB] Get:13 http://ftpmaster.internal/ubuntu jammy/main amd64 libtinfo6 amd64 6.3-1 [104 kB] Get:14 http://ftpmaster.internal/ubuntu jammy/main amd64 ncurses-bin amd64 6.3-1 [184 kB] Get:15 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 sed amd64 4.8-1 [188 kB] Get:16 http://ftpmaster.internal/ubuntu jammy/main amd64 libblkid1 amd64 2.37.2-4ubuntu1 [103 kB] Get:17 http://ftpmaster.internal/ubuntu jammy/main amd64 libpcre2-8-0 amd64 10.39-3 [220 kB] Get:18 http://ftpmaster.internal/ubuntu jammy/main amd64 libselinux1 amd64 3.3-1 [74.6 kB] Get:19 http://ftpmaster.internal/ubuntu jammy/main amd64 libmount1 amd64 2.37.2-4ubuntu1 [122 kB] Get:20 http://ftpmaster.internal/ubuntu jammy/main amd64 util-linux amd64 2.37.2-4ubuntu1 [1063 kB] Get:21 http://ftpmaster.internal/ubuntu jammy/main amd64 ncurses-base all 6.3-1 [19.9 kB] Get:22 http://ftpmaster.internal/ubuntu jammy/main amd64 libgpg-error0 amd64 1.42-3 [68.1 kB] Get:23 http://ftpmaster.internal/ubuntu jammy/main amd64 libgcrypt20 amd64 1.9.4-3ubuntu2 [515 kB] Get:24 http://ftpmaster.internal/ubuntu jammy/main amd64 libcc1-0 amd64 11.2.0-12ubuntu1 [53.8 kB] Get:25 http://ftpmaster.internal/ubuntu jammy/main amd64 gcc-11-base amd64 11.2.0-12ubuntu1 [20.7 kB] Get:26 http://ftpmaster.internal/ubuntu jammy/main amd64 libgcc-s1 amd64 11.2.0-12ubuntu1 [45.6 kB] Get:27 http://ftpmaster.internal/ubuntu jammy/main amd64 libgomp1 amd64 11.2.0-12ubuntu1 [117 kB] Get:28 http://ftpmaster.internal/ubuntu jammy/main amd64 libitm1 amd64 11.2.0-12ubuntu1 [30.0 kB] Get:29 http://ftpmaster.internal/ubuntu jammy/main amd64 libatomic1 amd64 11.2.0-12ubuntu1 [9998 B] Get:30 http://ftpmaster.internal/ubuntu jammy/main amd64 libasan6 amd64 11.2.0-12ubuntu1 [2282 kB] Get:31 http://ftpmaster.internal/ubuntu jammy/main amd64 liblsan0 amd64 11.2.0-12ubuntu1 [976 kB] Get:32 http://ftpmaster.internal/ubuntu jammy/main amd64 libtsan0 amd64 11.2.0-12ubuntu1 [2259 kB] Get:33 http://ftpmaster.internal/ubuntu jammy/main amd64 libubsan1 amd64 11.2.0-12ubuntu1 [922 kB] Get:34 http://ftpmaster.internal/ubuntu jammy/main amd64 libquadmath0 amd64 11.2.0-12ubuntu1 [154 kB] Get:35 http://ftpmaster.internal/ubuntu jammy/main amd64 g++-11 amd64 11.2.0-12ubuntu1 [11.4 MB] Get:36 http://ftpmaster.internal/ubuntu jammy/main amd64 libstdc++-11-dev amd64 11.2.0-12ubuntu1 [2098 kB] Get:37 http://ftpmaster.internal/ubuntu jammy/main amd64 libgcc-11-dev amd64 11.2.0-12ubuntu1 [2532 kB] Get:38 http://ftpmaster.internal/ubuntu jammy/main amd64 gcc-11 amd64 11.2.0-12ubuntu1 [20.1 MB] Get:39 http://ftpmaster.internal/ubuntu jammy/main amd64 cpp-11 amd64 11.2.0-12ubuntu1 [9962 kB] Get:40 http://ftpmaster.internal/ubuntu jammy/main amd64 libstdc++6 amd64 11.2.0-12ubuntu1 [656 kB] Get:41 http://ftpmaster.internal/ubuntu jammy/main amd64 libisl23 amd64 0.24-2 [728 kB] Get:42 http://ftpmaster.internal/ubuntu jammy/main amd64 libmpc3 amd64 1.2.1-1 [46.9 kB] Get:43 http://ftpmaster.internal/ubuntu jammy/main amd64 libzstd1 amd64 1.4.8+dfsg-3 [324 kB] Get:44 http://ftpmaster.internal/ubuntu jammy/main amd64 libctf0 amd64 2.37-10ubuntu1 [103 kB] Get:45 http://ftpmaster.internal/ubuntu jammy/main amd64 libctf-nobfd0 amd64 2.37-10ubuntu1 [106 kB] Get:46 http://ftpmaster.internal/ubuntu jammy/main amd64 libbinutils amd64 2.37-10ubuntu1 [653 kB] Get:47 http://ftpmaster.internal/ubuntu jammy/main amd64 binutils-common amd64 2.37-10ubuntu1 [213 kB] Get:48 http://ftpmaster.internal/ubuntu jammy/main amd64 binutils amd64 2.37-10ubuntu1 [3192 B] Get:49 http://ftpmaster.internal/ubuntu jammy/main amd64 binutils-x86-64-linux-gnu amd64 2.37-10ubuntu1 [2314 kB] Get:50 http://ftpmaster.internal/ubuntu jammy/main amd64 libapt-pkg6.0 amd64 2.3.13 [904 kB] Get:51 http://ftpmaster.internal/ubuntu jammy/main amd64 gpgv amd64 2.2.27-2ubuntu1 [137 kB] Get:52 http://ftpmaster.internal/ubuntu jammy/main amd64 libidn2-0 amd64 2.3.2-2 [66.5 kB] Get:53 http://ftpmaster.internal/ubuntu jammy/main amd64 libp11-kit0 amd64 0.24.0-5 [252 kB] Get:54 http://ftpmaster.internal/ubuntu jammy/main amd64 libtasn1-6 amd64 4.18.0-4 [42.9 kB] Get:55 http://ftpmaster.internal/ubuntu jammy/main amd64 libgnutls30 amd64 3.7.2-2ubuntu1 [957 kB] Get:56 http://ftpmaster.internal/ubuntu jammy/main amd64 libseccomp2 amd64 2.5.2-2ubuntu2 [48.3 kB] Get:57 http://ftpmaster.internal/ubuntu jammy/main amd64 apt amd64 2.3.13 [1387 kB] Get:58 http://ftpmaster.internal/ubuntu jammy/main amd64 libsepol2 amd64 3.3-1 [281 kB] Get:59 http://ftpmaster.internal/ubuntu jammy/main amd64 libsemanage-common all 3.3-1 [10.1 kB] Get:60 http://ftpmaster.internal/ubuntu jammy/main amd64 libsemanage2 amd64 3.3-1 [92.5 kB] Get:61 http://ftpmaster.internal/ubuntu jammy/main amd64 passwd amd64 1:4.8.1-1ubuntu10 [754 kB] Get:62 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libpam-modules-bin amd64 1.4.0-10ubuntu1 [37.4 kB] Get:63 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libpam-modules amd64 1.4.0-10ubuntu1 [280 kB] Get:64 http://ftpmaster.internal/ubuntu jammy/main amd64 logsave amd64 1.46.4-1ubuntu1 [10.9 kB] Get:65 http://ftpmaster.internal/ubuntu jammy/main amd64 libext2fs2 amd64 1.46.4-1ubuntu1 [209 kB] Get:66 http://ftpmaster.internal/ubuntu jammy/main amd64 e2fsprogs amd64 1.46.4-1ubuntu1 [589 kB] Get:67 http://ftpmaster.internal/ubuntu jammy/main amd64 mount amd64 2.37.2-4ubuntu1 [114 kB] Get:68 http://ftpmaster.internal/ubuntu jammy/main amd64 libattr1 amd64 1:2.5.1-1 [13.3 kB] Get:69 http://ftpmaster.internal/ubuntu jammy/main amd64 libcom-err2 amd64 1.46.4-1ubuntu1 [10.1 kB] Get:70 http://ftpmaster.internal/ubuntu jammy/main amd64 libk5crypto3 amd64 1.18.3-7 [86.2 kB] Get:71 http://ftpmaster.internal/ubuntu jammy/main amd64 libkrb5support0 amd64 1.18.3-7 [32.2 kB] Get:72 http://ftpmaster.internal/ubuntu jammy/main amd64 libkrb5-3 amd64 1.18.3-7 [355 kB] Get:73 http://ftpmaster.internal/ubuntu jammy/main amd64 libgssapi-krb5-2 amd64 1.18.3-7 [143 kB] Get:74 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libpam-runtime all 1.4.0-10ubuntu1 [40.2 kB] Get:75 http://ftpmaster.internal/ubuntu jammy/main amd64 libsmartcols1 amd64 2.37.2-4ubuntu1 [50.9 kB] Get:76 http://ftpmaster.internal/ubuntu jammy/main amd64 libuuid1 amd64 2.37.2-4ubuntu1 [23.8 kB] Get:77 http://ftpmaster.internal/ubuntu jammy/main amd64 libss2 amd64 1.46.4-1ubuntu1 [12.3 kB] Get:78 http://ftpmaster.internal/ubuntu jammy/main amd64 sensible-utils all 0.0.17 [20.1 kB] Get:79 http://ftpmaster.internal/ubuntu jammy/main amd64 usrmerge all 25ubuntu2 [54.7 kB] Get:80 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libssl3 amd64 3.0.0-1ubuntu1 [1896 kB] Get:81 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 openssl amd64 3.0.0-1ubuntu1 [1180 kB] Get:82 http://ftpmaster.internal/ubuntu jammy/main amd64 ca-certificates all 20211016 [148 kB] Get:83 http://ftpmaster.internal/ubuntu jammy/main amd64 libapparmor1 amd64 3.0.3-0ubuntu3 [37.8 kB] Get:84 http://ftpmaster.internal/ubuntu jammy/main amd64 libip4tc2 amd64 1.8.7-1ubuntu4 [19.8 kB] Get:85 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libkmod2 amd64 28-1ubuntu5 [48.0 kB] Get:86 http://ftpmaster.internal/ubuntu jammy/main amd64 libsqlite3-0 amd64 3.36.0-2 [641 kB] Get:87 http://ftpmaster.internal/ubuntu jammy/main amd64 tzdata all 2021e-1ubuntu1 [343 kB] Get:88 http://ftpmaster.internal/ubuntu jammy/main amd64 libgdbm6 amd64 1.22-1 [35.2 kB] Get:89 http://ftpmaster.internal/ubuntu jammy/main amd64 gpg amd64 2.2.27-2ubuntu1 [518 kB] Get:90 http://ftpmaster.internal/ubuntu jammy/main amd64 gpgconf amd64 2.2.27-2ubuntu1 [93.9 kB] Get:91 http://ftpmaster.internal/ubuntu jammy/main amd64 gpg-agent amd64 2.2.27-2ubuntu1 [209 kB] Get:92 http://ftpmaster.internal/ubuntu jammy/main amd64 libgdbm-compat4 amd64 1.22-1 [6450 B] 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RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-22451844 amd64 jammy-proposed -c chroot:build-PACKAGEBUILD-22451844 --arch=amd64 --dist=jammy-proposed --nolog -A r-bioc-gosemsim_2.20.0-1.dsc Initiating build PACKAGEBUILD-22451844 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-162-generic #170-Ubuntu SMP Mon Oct 18 11:38:05 UTC 2021 x86_64 sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on lcy01-amd64-022.buildd +==============================================================================+ | r-bioc-gosemsim 2.20.0-1 (amd64) Fri, 26 Nov 2021 06:34:33 +0000 | +==============================================================================+ Package: r-bioc-gosemsim Version: 2.20.0-1 Source Version: 2.20.0-1 Distribution: jammy-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-22451844/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-bioc-gosemsim_2.20.0-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/r-bioc-gosemsim-ZGQXMG/r-bioc-gosemsim-2.20.0' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-gosemsim-ZGQXMG' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-Ul5tug/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-Ul5tug/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Ul5tug/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-Ul5tug/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Ul5tug/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-Ul5tug/apt_archive ./ Packages [432 B] Fetched 1738 B in 0s (117 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libsepol1 Use 'apt autoremove' to remove it. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 652 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-Ul5tug/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [652 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 652 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13434 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-annotationdbi, r-bioc-go.db, r-cran-rcpp Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-annotationdbi, r-bioc-go.db, r-cran-rcpp dpkg-deb: building package 'sbuild-build-depends-r-bioc-gosemsim-dummy' in '/<>/resolver-Ul5tug/apt_archive/sbuild-build-depends-r-bioc-gosemsim-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-gosemsim-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-Ul5tug/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Ul5tug/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-Ul5tug/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Ul5tug/apt_archive ./ Sources [536 B] Get:5 copy:/<>/resolver-Ul5tug/apt_archive ./ Packages [613 B] Fetched 2112 B in 0s (185 kB/s) Reading package lists... Reading package lists... Install r-bioc-gosemsim build dependencies (apt-based resolver) --------------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libsepol1 Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils dctrl-tools debhelper debugedit dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-11 groff-base icu-devtools intltool-debian libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdw1 libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-11-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu67 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libldap-2.5-0 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev librtmp1 libsasl2-2 libsasl2-modules-db libscalar-list-utils-perl libsigsegv2 libsm6 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp6 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db pkg-config po-debconf r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biostrings r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-go.db r-bioc-iranges r-bioc-keggrest r-bioc-s4vectors r-bioc-xvector r-bioc-zlibbioc r-cran-askpass r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-cachem r-cran-crayon r-cran-curl r-cran-dbi r-cran-ellipsis r-cran-fastmap r-cran-glue r-cran-httr r-cran-jsonlite r-cran-littler r-cran-memoise r-cran-mime r-cran-openssl r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-r6 r-cran-rcpp r-cran-rcurl r-cran-rlang r-cran-rsqlite r-cran-sys r-cran-vctrs ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-11-multilib gfortran-11-doc libcoarrays-dev groff liblapack-doc icu-doc liblzma-doc ncurses-doc libscalar-number-perl readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk libbusiness-isbn-perl libwww-perl libcurl4-gnutls-dev m4-doc apparmor less www-browser libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo r-cran-runit r-bioc-org.hs.eg.db r-bioc-graph r-bioc-biocstyle r-cran-knitr r-bioc-all r-bioc-genomicranges r-bioc-delayedarray r-bioc-rsamtools r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-bioc-bsgenome r-bioc-genomicfeatures r-bioc-genomicalignments r-cran-markdown r-bioc-summarizedexperiment r-cran-matrix r-bioc-shortread r-cran-data.table r-cran-testthat r-cran-roxygen2 r-cran-rmarkdown r-cran-covr r-cran-pillar r-cran-rstudioapi r-cran-magrittr r-cran-rmysql r-cran-dplyr r-cran-forcats r-cran-ggplot2 r-cran-r.utils r-cran-stringr r-cran-waldo r-cran-withr r-cran-httpuv r-cran-jpeg r-cran-readr r-cran-xml2 r-cran-plyr r-cran-sf r-cran-getopt r-cran-digest r-cran-inline r-cran-xml r-cran-cli r-cran-gert r-cran-gh r-cran-hms r-cran-rvest r-cran-zeallot Recommended packages: devscripts cme git-buildpackage curl | wget | lynx bzip2-doc libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libclone-perl libldap-common libdevel-partialdump-perl libpng-tools publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl r-recommended r-doc-html r-cran-runit r-cran-testthat r-cran-withr r-cran-mockery r-cran-httpuv r-cran-webutils r-cran-sp r-cran-sodium r-cran-rmarkdown r-cran-dbitest r-cran-tibble r-cran-generics r-cran-xml2 r-cran-dplyr r-cran-waldo libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils dctrl-tools debhelper debugedit dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-11 groff-base icu-devtools intltool-debian libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdw1 libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-11-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu67 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libldap-2.5-0 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev librtmp1 libsasl2-2 libsasl2-modules-db libscalar-list-utils-perl libsigsegv2 libsm6 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp6 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db pkg-config po-debconf r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biostrings r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-go.db r-bioc-iranges r-bioc-keggrest r-bioc-s4vectors r-bioc-xvector r-bioc-zlibbioc r-cran-askpass r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-cachem r-cran-crayon r-cran-curl r-cran-dbi r-cran-ellipsis r-cran-fastmap r-cran-glue r-cran-httr r-cran-jsonlite r-cran-littler r-cran-memoise r-cran-mime r-cran-openssl r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-r6 r-cran-rcpp r-cran-rcurl r-cran-rlang r-cran-rsqlite r-cran-sys r-cran-vctrs sbuild-build-depends-r-bioc-gosemsim-dummy ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 213 newly installed, 0 to remove and 0 not upgraded. Need to get 164 MB of archives. After this operation, 442 MB of additional disk space will be used. 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jammy/main amd64 libthai0 amd64 0.1.28-4.1 [19.2 kB] Get:83 http://ftpmaster.internal/ubuntu jammy/main amd64 libpango-1.0-0 amd64 1.48.10+ds1-1 [195 kB] Get:84 http://ftpmaster.internal/ubuntu jammy/main amd64 libpangoft2-1.0-0 amd64 1.48.10+ds1-1 [51.0 kB] Get:85 http://ftpmaster.internal/ubuntu jammy/main amd64 libpangocairo-1.0-0 amd64 1.48.10+ds1-1 [37.1 kB] Get:86 http://ftpmaster.internal/ubuntu jammy/main amd64 libtcl8.6 amd64 8.6.12+dfsg-1 [989 kB] Get:87 http://ftpmaster.internal/ubuntu jammy/main amd64 libdeflate0 amd64 1.8-1ubuntu1 [56.4 kB] Get:88 http://ftpmaster.internal/ubuntu jammy/main amd64 libjbig0 amd64 2.1-3.1build2 [28.8 kB] Get:89 http://ftpmaster.internal/ubuntu jammy/main amd64 libwebp6 amd64 0.6.1-2.1build1 [198 kB] Get:90 http://ftpmaster.internal/ubuntu jammy/main amd64 libtiff5 amd64 4.3.0-2 [183 kB] Get:91 http://ftpmaster.internal/ubuntu jammy/main amd64 libxft2 amd64 2.3.3-0ubuntu4 [41.5 kB] Get:92 http://ftpmaster.internal/ubuntu jammy/main amd64 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amd64 3.9.0-3ubuntu3 [161 kB] Get:103 http://ftpmaster.internal/ubuntu jammy/main amd64 liblapack-dev amd64 3.9.0-3ubuntu3 [4667 kB] Get:104 http://ftpmaster.internal/ubuntu jammy/main amd64 libncurses-dev amd64 6.3-1 [380 kB] Get:105 http://ftpmaster.internal/ubuntu jammy/main amd64 libncurses5-dev amd64 6.3-1 [780 B] Get:106 http://ftpmaster.internal/ubuntu jammy/main amd64 libreadline-dev amd64 8.1-2build1 [166 kB] Get:107 http://ftpmaster.internal/ubuntu jammy/main amd64 libjpeg-turbo8-dev amd64 2.1.1-0ubuntu1 [257 kB] Get:108 http://ftpmaster.internal/ubuntu jammy/main amd64 libjpeg8-dev amd64 8c-2ubuntu8 [1552 B] Get:109 http://ftpmaster.internal/ubuntu jammy/main amd64 libjpeg-dev amd64 8c-2ubuntu8 [1546 B] Get:110 http://ftpmaster.internal/ubuntu jammy/main amd64 libpcre2-16-0 amd64 10.39-3 [202 kB] Get:111 http://ftpmaster.internal/ubuntu jammy/main amd64 libpcre2-32-0 amd64 10.39-3 [193 kB] Get:112 http://ftpmaster.internal/ubuntu jammy/main amd64 libpcre2-posix3 amd64 10.39-3 [6140 B] Get:113 http://ftpmaster.internal/ubuntu jammy/main amd64 libpcre2-dev amd64 10.39-3 [727 kB] Get:114 http://ftpmaster.internal/ubuntu jammy/main amd64 libpcre16-3 amd64 2:8.39-13build4 [164 kB] Get:115 http://ftpmaster.internal/ubuntu jammy/main amd64 libpcre32-3 amd64 2:8.39-13build4 [155 kB] Get:116 http://ftpmaster.internal/ubuntu jammy/main amd64 libpcrecpp0v5 amd64 2:8.39-13build4 [16.5 kB] Get:117 http://ftpmaster.internal/ubuntu jammy/main amd64 libpcre3-dev amd64 2:8.39-13build4 [578 kB] Get:118 http://ftpmaster.internal/ubuntu jammy/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2ubuntu7 [164 kB] Get:119 http://ftpmaster.internal/ubuntu jammy/main amd64 libpng-dev amd64 1.6.37-3build4 [192 kB] Get:120 http://ftpmaster.internal/ubuntu jammy/main amd64 libbz2-dev amd64 1.0.8-4ubuntu4 [32.5 kB] Get:121 http://ftpmaster.internal/ubuntu jammy/main amd64 liblzma-dev amd64 5.2.5-2build1 [159 kB] Get:122 http://ftpmaster.internal/ubuntu jammy/main amd64 icu-devtools amd64 67.1-7ubuntu1 [194 kB] Get:123 http://ftpmaster.internal/ubuntu jammy/main amd64 libicu-dev amd64 67.1-7ubuntu1 [11.1 MB] Get:124 http://ftpmaster.internal/ubuntu jammy/main amd64 pkg-config amd64 0.29.2-1ubuntu2 [48.2 kB] Get:125 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-base-dev all 4.1.2-1ubuntu1 [4306 B] Get:126 http://ftpmaster.internal/ubuntu jammy/main amd64 libfile-which-perl all 1.23-1 [13.8 kB] Get:127 http://ftpmaster.internal/ubuntu jammy/universe amd64 libswitch-perl all 2.17-2.1 [18.3 kB] Get:128 http://ftpmaster.internal/ubuntu jammy/main amd64 libencode-locale-perl all 1.05-1.1 [11.8 kB] Get:129 http://ftpmaster.internal/ubuntu jammy/main amd64 libtimedate-perl all 2.3300-2 [34.0 kB] Get:130 http://ftpmaster.internal/ubuntu jammy/main amd64 libhttp-date-perl all 6.05-1 [9920 B] Get:131 http://ftpmaster.internal/ubuntu jammy/main amd64 libio-html-perl all 1.004-2 [15.4 kB] Get:132 http://ftpmaster.internal/ubuntu jammy/main amd64 liblwp-mediatypes-perl all 6.04-1 [19.5 kB] Get:133 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 liburi-perl all 5.10-1 [78.8 kB] Get:134 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libhttp-message-perl all 6.35-1 [77.0 kB] Get:135 http://ftpmaster.internal/ubuntu jammy/main amd64 libparams-util-perl amd64 1.102-1build2 [22.6 kB] Get:136 http://ftpmaster.internal/ubuntu jammy/main amd64 libsub-install-perl all 0.928-1.1 [9972 B] Get:137 http://ftpmaster.internal/ubuntu jammy/main amd64 libdata-optlist-perl all 0.112-1 [11.0 kB] Get:138 http://ftpmaster.internal/ubuntu jammy/main amd64 libb-hooks-op-check-perl amd64 0.22-1build4 [10.6 kB] Get:139 http://ftpmaster.internal/ubuntu jammy/main amd64 libdynaloader-functions-perl all 0.003-1.1 [12.1 kB] Get:140 http://ftpmaster.internal/ubuntu jammy/main amd64 libdevel-callchecker-perl amd64 0.008-1ubuntu3 [14.8 kB] Get:141 http://ftpmaster.internal/ubuntu jammy/main amd64 libparams-classify-perl amd64 0.015-1build4 [21.9 kB] Get:142 http://ftpmaster.internal/ubuntu jammy/main amd64 libmodule-runtime-perl all 0.016-1 [16.2 kB] Get:143 http://ftpmaster.internal/ubuntu jammy/main amd64 libtry-tiny-perl all 0.30-1 [20.5 kB] Get:144 http://ftpmaster.internal/ubuntu jammy/main amd64 libmodule-implementation-perl all 0.09-1.1 [11.6 kB] Get:145 http://ftpmaster.internal/ubuntu jammy/universe amd64 libscalar-list-utils-perl amd64 1:1.59-1 [56.7 kB] Get:146 http://ftpmaster.internal/ubuntu jammy/main amd64 libpackage-stash-perl all 0.39-1 [19.1 kB] Get:147 http://ftpmaster.internal/ubuntu jammy/universe amd64 libclass-load-perl all 0.25-1 [13.5 kB] Get:148 http://ftpmaster.internal/ubuntu jammy/universe amd64 libclass-load-xs-perl amd64 0.10-1build6 [13.5 kB] Get:149 http://ftpmaster.internal/ubuntu jammy/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [6784 B] Get:150 http://ftpmaster.internal/ubuntu jammy/universe amd64 libdevel-globaldestruction-perl all 0.14-1.1 [6916 B] Get:151 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amd64 libsub-name-perl amd64 0.26-1build2 [11.6 kB] Get:161 http://ftpmaster.internal/ubuntu jammy/universe amd64 libpackage-deprecationmanager-perl all 0.17-1.1 [15.5 kB] Get:162 http://ftpmaster.internal/ubuntu jammy/main amd64 libpackage-stash-xs-perl amd64 0.29-1build4 [19.3 kB] Get:163 http://ftpmaster.internal/ubuntu jammy/universe amd64 libmoose-perl amd64 2.2200-1 [749 kB] Get:164 http://ftpmaster.internal/ubuntu jammy/main amd64 libvariable-magic-perl amd64 0.62-1build4 [35.8 kB] Get:165 http://ftpmaster.internal/ubuntu jammy/main amd64 libb-hooks-endofscope-perl all 0.25-1 [17.8 kB] Get:166 http://ftpmaster.internal/ubuntu jammy/main amd64 libsub-identify-perl amd64 0.14-1build4 [10.6 kB] Get:167 http://ftpmaster.internal/ubuntu jammy/main amd64 libnamespace-clean-perl all 0.27-1 [13.6 kB] Get:168 http://ftpmaster.internal/ubuntu jammy/main amd64 libcurl3-gnutls amd64 7.74.0-1.3ubuntu2 [268 kB] Get:169 http://ftpmaster.internal/ubuntu jammy/universe amd64 libwww-curl-perl amd64 4.17-7build1 [50.9 kB] Get:170 http://ftpmaster.internal/ubuntu jammy/universe amd64 libwww-curl-simple-perl all 0.100191-2 [10.9 kB] Get:171 http://ftpmaster.internal/ubuntu jammy/universe amd64 dh-r all 20210218ubuntu1 [36.4 kB] Get:172 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-littler amd64 0.3.14-1 [93.8 kB] Get:173 http://ftpmaster.internal/ubuntu jammy/universe amd64 littler all 0.3.14-1 [2266 B] Get:174 http://ftpmaster.internal/ubuntu jammy-proposed/universe amd64 r-bioc-biocgenerics all 0.40.0-1 [583 kB] Get:175 http://ftpmaster.internal/ubuntu jammy-proposed/universe amd64 r-bioc-biobase amd64 2.54.0-1 [2223 kB] Get:176 http://ftpmaster.internal/ubuntu jammy-proposed/universe amd64 r-bioc-s4vectors amd64 0.32.3-1 [2060 kB] Get:177 http://ftpmaster.internal/ubuntu jammy-proposed/universe amd64 r-bioc-iranges amd64 2.28.0-1 [2221 kB] Get:178 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-dbi all 1.1.1-1 [617 kB] Get:179 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-bit amd64 4.0.4+dfsg-1 [423 kB] Get:180 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] Get:181 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-rlang amd64 0.4.12-2 [1164 kB] Get:182 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] Get:183 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-glue amd64 1.5.0-1 [143 kB] Get:184 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-vctrs amd64 0.3.8-1ubuntu1 [1079 kB] Get:185 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-blob all 1.2.2-1 [50.1 kB] Get:186 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-fastmap amd64 1.1.0-1 [64.8 kB] Get:187 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-cachem amd64 1.0.6-1 [70.5 kB] Get:188 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-memoise all 2.0.0-1 [52.8 kB] Get:189 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] Get:190 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-pkgkitten all 0.2.2-2 [25.3 kB] Get:191 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-rcpp amd64 1.0.7-2 [1953 kB] Get:192 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] Get:193 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-rsqlite amd64 2.2.8-1 [1101 kB] Get:194 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-curl amd64 4.3.2+dfsg-1 [155 kB] Get:195 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-jsonlite amd64 1.7.2+dfsg-1 [447 kB] Get:196 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] Get:197 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-sys amd64 3.4-1 [43.0 kB] Get:198 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-askpass amd64 1.1-2 [22.4 kB] Get:199 http://ftpmaster.internal/ubuntu jammy-proposed/universe amd64 r-cran-openssl amd64 1.4.5+dfsg-1build1 [389 kB] Get:200 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] Get:201 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-httr all 1.4.2-1 [478 kB] Get:202 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-png amd64 0.1-7-4 [39.7 kB] Get:203 http://ftpmaster.internal/ubuntu jammy-proposed/universe amd64 r-bioc-zlibbioc all 1.40.0+dfsg-1 [9270 B] Get:204 http://ftpmaster.internal/ubuntu jammy-proposed/universe amd64 r-bioc-xvector amd64 0.34.0-1 [614 kB] Get:205 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] Get:206 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-rcurl amd64 1.98-1.5-1 [810 kB] Get:207 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-bioc-genomeinfodbdata all 1.2.6-1 [11.0 MB] Get:208 http://ftpmaster.internal/ubuntu jammy-proposed/universe amd64 r-bioc-genomeinfodb all 1.30.0-1 [3951 kB] Get:209 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-crayon all 1.4.2-1 [159 kB] Get:210 http://ftpmaster.internal/ubuntu jammy-proposed/universe amd64 r-bioc-biostrings amd64 2.62.0-1 [14.1 MB] Get:211 http://ftpmaster.internal/ubuntu jammy-proposed/universe amd64 r-bioc-keggrest all 1.34.0+dfsg-1 [179 kB] Get:212 http://ftpmaster.internal/ubuntu jammy-proposed/universe amd64 r-bioc-annotationdbi all 1.56.2-1 [4928 kB] Get:213 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-bioc-go.db all 3.13.0-1 [20.3 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 164 MB in 2s (76.0 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 13434 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.37.2-4ubuntu1_amd64.deb ... Unpacking bsdextrautils (2.37.2-4ubuntu1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../001-libuchardet0_0.0.7-1build1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1build1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-7_amd64.deb ... Unpacking groff-base (1.22.4-7) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../003-libpipeline1_1.5.4-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.4-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.4-2build1_amd64.deb ... Unpacking man-db (2.9.4-2build1) ... Selecting previously unselected package libmd0:amd64. Preparing to unpack .../005-libmd0_1.0.4-1_amd64.deb ... Unpacking libmd0:amd64 (1.0.4-1) ... 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Setting up libfile-which-perl (1.23-1) ... Setting up libxau6:amd64 (1:1.0.9-1build4) ... Setting up libncurses-dev:amd64 (6.3-1) ... Setting up libpsl5:amd64 (0.21.0-1.2build1) ... Setting up bsdextrautils (2.37.2-4ubuntu1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libpcre16-3:amd64 (2:8.39-13build4) ... Setting up libicu67:amd64 (67.1-7ubuntu1) ... Setting up libdynaloader-functions-perl (0.003-1.1) ... Setting up libdatrie1:amd64 (0.2.13-1ubuntu3) ... Setting up libmagic-mgc (1:5.41-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libsub-identify-perl (0.14-1build4) ... Setting up libglib2.0-0:amd64 (2.70.1-1) ... No schema files found: doing nothing. Setting up libscalar-list-utils-perl (1:1.59-1) ... Setting up unzip (6.0-26ubuntu2) ... Setting up libdebhelper-perl (13.5.2ubuntu1) ... Setting up libbrotli1:amd64 (1.0.9-2build4) ... Setting up liblwp-mediatypes-perl (6.04-1) ... Setting up x11-common (1:7.7+23ubuntu1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libtry-tiny-perl (0.30-1) ... Setting up libnghttp2-14:amd64 (1.43.0-1build1) ... Setting up libmagic1:amd64 (1:5.41-2) ... Setting up libdeflate0:amd64 (1.8-1ubuntu1) ... Setting up gettext-base (0.21-4ubuntu3) ... Setting up libencode-locale-perl (1.05-1.1) ... Setting up file (1:5.41-2) ... Setting up libreadline-dev:amd64 (8.1-2build1) ... Setting up libjbig0:amd64 (2.1-3.1build2) ... Setting up libpcre2-16-0:amd64 (10.39-3) ... Setting up libsub-install-perl (0.928-1.1) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg2-2build1) ... Setting up zip (3.0-12build1) ... Setting up libpackage-stash-xs-perl (0.29-1build4) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libpcre2-32-0:amd64 (10.39-3) ... Setting up libblas3:amd64 (3.9.0-3ubuntu3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libalgorithm-c3-perl (0.11-1) ... Setting up libswitch-perl (2.17-2.1) ... Setting up libfreetype6:amd64 (2.11.0+dfsg-1) ... Setting up libx11-data (2:1.7.2-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2build3) ... Setting up libsigsegv2:amd64 (2.13-1ubuntu2) ... Setting up libfribidi0:amd64 (1.0.8-2ubuntu2) ... Setting up libpcre32-3:amd64 (2:8.39-13build4) ... Setting up libvariable-magic-perl (0.62-1build4) ... Setting up libio-html-perl (1.004-2) ... Setting up libtcl8.6:amd64 (8.6.12+dfsg-1) ... Setting up autopoint (0.21-4ubuntu3) ... Setting up libwebp6:amd64 (0.6.1-2.1build1) ... Setting up libb-hooks-op-check-perl (0.22-1build4) ... Setting up icu-devtools (67.1-7ubuntu1) ... Setting up pkg-config (0.29.2-1ubuntu2) ... Setting up fonts-dejavu-core (2.37-2build1) ... Setting up ucf (3.0043) ... Setting up libjpeg-turbo8:amd64 (2.1.1-0ubuntu1) ... Setting up libparams-util-perl (1.102-1build2) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg2-2build1) ... Setting up libssh-4:amd64 (0.9.6-1) ... Setting up libgfortran5:amd64 (11.2.0-12ubuntu1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up liblzma-dev:amd64 (5.2.5-2build1) ... Setting up libsub-name-perl (0.26-1build2) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2ubuntu7) ... Setting up libpcre2-posix3:amd64 (10.39-3) ... Setting up libmd0:amd64 (1.0.4-1) ... Setting up libuchardet0:amd64 (0.0.7-1build1) ... Setting up libncurses5-dev:amd64 (6.3-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libharfbuzz0b:amd64 (2.7.4-1ubuntu2) ... Setting up libthai-data (0.1.28-4.1) ... Setting up libdevel-globaldestruction-perl (0.14-1.1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libbsd0:amd64 (0.11.3-1ubuntu3) ... Setting up libelf1:amd64 (0.186-1) ... Setting up libicu-dev:amd64 (67.1-7ubuntu1) ... Setting up libxml2:amd64 (2.9.12+dfsg-5) ... Setting up xdg-utils (1.1.3-4.1ubuntu1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up liburi-perl (5.10-1) ... Setting up libblas-dev:amd64 (3.9.0-3ubuntu3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up dctrl-tools (2.24-3build1) ... Setting up libbz2-dev:amd64 (1.0.8-4ubuntu4) ... Setting up libjpeg8:amd64 (8c-2ubuntu8) ... Setting up libfile-stripnondeterminism-perl (1.12.1-1) ... Setting up libpaper1:amd64 (1.1.28build1) ... Creating config file /etc/papersize with new version Setting up libice6:amd64 (2:1.0.10-1build1) ... Setting up libhttp-date-perl (6.05-1) ... Setting up libdw1:amd64 (0.186-1) ... Setting up libjpeg-turbo8-dev:amd64 (2.1.1-0ubuntu1) ... Setting up libxdmcp6:amd64 (1:1.1.3-0ubuntu4) ... Setting up liblapack3:amd64 (3.9.0-3ubuntu3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.14-3ubuntu2) ... Setting up gettext (0.21-4ubuntu3) ... Setting up libpcre2-dev:amd64 (10.39-3) ... Setting up libtool (2.4.6-15build1) ... Setting up libxcb-render0:amd64 (1.14-3ubuntu2) ... Setting up libpcre3-dev:amd64 (2:8.39-13build4) ... Setting up libgfortran-11-dev:amd64 (11.2.0-12ubuntu1) ... Setting up fontconfig-config (2.13.1-4.2ubuntu4) ... Setting up libpng-dev:amd64 (1.6.37-3build4) ... Setting up m4 (1.4.18-5ubuntu1) ... Setting up libxcb-shm0:amd64 (1.14-3ubuntu2) ... Setting up libpaper-utils (1.1.28build1) ... Setting up libclass-c3-perl (0.35-1) ... Setting up libdevel-callchecker-perl (0.008-1ubuntu3) ... Setting up libldap-2.5-0:amd64 (2.5.6+dfsg-1~exp1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libthai0:amd64 (0.1.28-4.1) ... Setting up liblapack-dev:amd64 (3.9.0-3ubuntu3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libdata-optlist-perl (0.112-1) ... Setting up gfortran-11 (11.2.0-12ubuntu1) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.12.1-1) ... Setting up dwz (0.14-1build1) ... Setting up groff-base (1.22.4-7) ... Setting up debugedit (1:5.0-3) ... Setting up libcurl4:amd64 (7.74.0-1.3ubuntu2) ... Setting up libx11-6:amd64 (2:1.7.2-2) ... Setting up libtiff5:amd64 (4.3.0-2) ... Setting up libfontconfig1:amd64 (2.13.1-4.2ubuntu4) ... Setting up libmro-compat-perl (0.13-1) ... Setting up libjpeg8-dev:amd64 (8c-2ubuntu8) ... Setting up libsm6:amd64 (2:1.2.3-1build1) ... Setting up libxmuu1:amd64 (2:1.1.3-0ubuntu2) ... Setting up libsub-exporter-perl (0.988-1) ... Setting up libhttp-message-perl (6.35-1) ... Setting up libeval-closure-perl (0.14-1) ... Setting up automake (1:1.16.5-1.1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up fontconfig (2.13.1-4.2ubuntu4) ... Regenerating fonts cache... done. Setting up libxrender1:amd64 (1:0.9.10-1build3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libparams-classify-perl (0.015-1build4) ... Setting up libpango-1.0-0:amd64 (1.48.10+ds1-1) ... Setting up libjpeg-dev:amd64 (8c-2ubuntu8) ... Setting up libxext6:amd64 (2:1.3.4-1) ... Setting up libcurl3-gnutls:amd64 (7.74.0-1.3ubuntu2) ... Setting up man-db (2.9.4-2build1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up gfortran (4:11.2.0-1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:amd64 (1.16.0-5ubuntu2) ... Setting up dh-autoreconf (20) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libdist-checkconflicts-perl (0.11-1.1) ... Setting up libxt6:amd64 (1:1.2.0-1build1) ... Setting up xauth (1:1.1-1build1) ... Setting up libxss1:amd64 (1:1.2.3-1build1) ... Setting up libpangoft2-1.0-0:amd64 (1.48.10+ds1-1) ... Setting up libpangocairo-1.0-0:amd64 (1.48.10+ds1-1) ... Setting up libxft2:amd64 (2.3.3-0ubuntu4) ... Setting up libmodule-implementation-perl (0.09-1.1) ... Setting up libpackage-stash-perl (0.39-1) ... Setting up libtk8.6:amd64 (8.6.12-1) ... Setting up libwww-curl-perl (4.17-7build1) ... Setting up debhelper (13.5.2ubuntu1) ... Setting up libmodule-runtime-conflicts-perl (0.003-1.1) ... Setting up libclass-load-perl (0.25-1) ... Setting up r-base-core (4.1.2-1ubuntu1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.4.2-1) ... Setting up libpackage-deprecationmanager-perl (0.17-1.1) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-1build6) ... Setting up r-cran-r6 (2.5.1-1) ... Setting up r-cran-pkgkitten (0.2.2-2) ... Setting up libb-hooks-endofscope-perl (0.25-1) ... Setting up r-bioc-genomeinfodbdata (1.2.6-1) ... Setting up r-cran-littler (0.3.14-1) ... Setting up r-cran-rcpp (1.0.7-2) ... Setting up r-cran-curl (4.3.2+dfsg-1) ... Setting up r-bioc-biocgenerics (0.40.0-1) ... Setting up r-cran-rlang (0.4.12-2) ... Setting up r-base-dev (4.1.2-1ubuntu1) ... Setting up littler (0.3.14-1) ... Setting up r-cran-sys (3.4-1) ... Setting up r-cran-plogr (0.2.0-3build1) ... Setting up r-cran-mime (0.12-1) ... Setting up libmoose-perl:amd64 (2.2200-1) ... Setting up r-cran-dbi (1.1.1-1) ... Setting up r-cran-glue (1.5.0-1) ... Setting up r-cran-bit (4.0.4+dfsg-1) ... Setting up r-cran-bitops (1.0-7-1) ... Setting up r-cran-bit64 (4.0.5-1) ... Setting up r-bioc-zlibbioc (1.40.0+dfsg-1) ... Setting up r-cran-askpass (1.1-2) ... Setting up r-cran-fastmap (1.1.0-1) ... Setting up r-cran-png (0.1-7-4) ... Setting up r-bioc-biobase (2.54.0-1) ... Setting up r-cran-jsonlite (1.7.2+dfsg-1) ... Setting up r-cran-pkgconfig (2.0.3-2build1) ... Setting up r-bioc-s4vectors (0.32.3-1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up r-cran-cachem (1.0.6-1) ... Setting up r-bioc-iranges (2.28.0-1) ... Setting up r-cran-rcurl (1.98-1.5-1) ... Setting up r-cran-ellipsis (0.3.2-2) ... Setting up r-cran-openssl (1.4.5+dfsg-1build1) ... Setting up libwww-curl-simple-perl (0.100191-2) ... Setting up r-bioc-genomeinfodb (1.30.0-1) ... Setting up r-cran-httr (1.4.2-1) ... Setting up r-cran-memoise (2.0.0-1) ... Setting up r-bioc-xvector (0.34.0-1) ... Setting up dh-r (20210218ubuntu1) ... Setting up r-cran-vctrs (0.3.8-1ubuntu1) ... Setting up r-bioc-biostrings (2.62.0-1) ... Setting up r-cran-blob (1.2.2-1) ... Setting up r-cran-rsqlite (2.2.8-1) ... Setting up r-bioc-keggrest (1.34.0+dfsg-1) ... Setting up r-bioc-annotationdbi (1.56.2-1) ... Setting up r-bioc-go.db (3.13.0-1) ... Setting up sbuild-build-depends-r-bioc-gosemsim-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.34-0ubuntu3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-162-generic amd64 (x86_64) Toolchain package versions: binutils_2.37-10ubuntu1 dpkg-dev_1.20.9ubuntu2 g++-11_11.2.0-12ubuntu1 gcc-11_11.2.0-12ubuntu1 libc6-dev_2.34-0ubuntu3 libstdc++-11-dev_11.2.0-12ubuntu1 libstdc++6_11.2.0-12ubuntu1 linux-libc-dev_5.15.0-12.12 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1ubuntu1 apt_2.3.13 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4ubuntu3 autotools-dev_20180224.1+nmu1 base-files_12ubuntu2 base-passwd_3.5.52 bash_5.1-3ubuntu2 binutils_2.37-10ubuntu1 binutils-common_2.37-10ubuntu1 binutils-x86-64-linux-gnu_2.37-10ubuntu1 bsdextrautils_2.37.2-4ubuntu1 bsdutils_1:2.37.2-4ubuntu1 build-essential_12.9ubuntu2 bzip2_1.0.8-4ubuntu4 ca-certificates_20211016 coreutils_8.32-4ubuntu3 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pkgbinarymangler_149 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3 procps_2:3.3.17-5ubuntu3 r-base-core_4.1.2-1ubuntu1 r-base-dev_4.1.2-1ubuntu1 r-bioc-annotationdbi_1.56.2-1 r-bioc-biobase_2.54.0-1 r-bioc-biocgenerics_0.40.0-1 r-bioc-biostrings_2.62.0-1 r-bioc-genomeinfodb_1.30.0-1 r-bioc-genomeinfodbdata_1.2.6-1 r-bioc-go.db_3.13.0-1 r-bioc-iranges_2.28.0-1 r-bioc-keggrest_1.34.0+dfsg-1 r-bioc-s4vectors_0.32.3-1 r-bioc-xvector_0.34.0-1 r-bioc-zlibbioc_1.40.0+dfsg-1 r-cran-askpass_1.1-2 r-cran-bit_4.0.4+dfsg-1 r-cran-bit64_4.0.5-1 r-cran-bitops_1.0-7-1 r-cran-blob_1.2.2-1 r-cran-cachem_1.0.6-1 r-cran-crayon_1.4.2-1 r-cran-curl_4.3.2+dfsg-1 r-cran-dbi_1.1.1-1 r-cran-ellipsis_0.3.2-2 r-cran-fastmap_1.1.0-1 r-cran-glue_1.5.0-1 r-cran-httr_1.4.2-1 r-cran-jsonlite_1.7.2+dfsg-1 r-cran-littler_0.3.14-1 r-cran-memoise_2.0.0-1 r-cran-mime_0.12-1 r-cran-openssl_1.4.5+dfsg-1build1 r-cran-pkgconfig_2.0.3-2build1 r-cran-pkgkitten_0.2.2-2 r-cran-plogr_0.2.0-3build1 r-cran-png_0.1-7-4 r-cran-r6_2.5.1-1 r-cran-rcpp_1.0.7-2 r-cran-rcurl_1.98-1.5-1 r-cran-rlang_0.4.12-2 r-cran-rsqlite_2.2.8-1 r-cran-sys_3.4-1 r-cran-vctrs_0.3.8-1ubuntu1 readline-common_8.1-2build1 rpcsvc-proto_1.4.2-0ubuntu5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-gosemsim-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 systemd_248.3-1ubuntu8 systemd-sysv_248.3-1ubuntu8 systemd-timesyncd_248.3-1ubuntu8 sysvinit-utils_2.96-7ubuntu2 tar_1.34+dfsg-1build2 tzdata_2021e-1ubuntu1 ubuntu-keyring_2021.03.26 ucf_3.0043 unzip_6.0-26ubuntu2 usrmerge_25ubuntu2 util-linux_2.37.2-4ubuntu1 x11-common_1:7.7+23ubuntu1 xauth_1:1.1-1build1 xdg-utils_1.1.3-4.1ubuntu1 xz-utils_5.2.5-2build1 zip_3.0-12build1 zlib1g_1:1.2.11.dfsg-2ubuntu7 zlib1g-dev_1:1.2.11.dfsg-2ubuntu7 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu Nov 25 13:52:08 2021 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-bioc-gosemsim_2.20.0-1.dsc dpkg-source: info: extracting r-bioc-gosemsim in /<> dpkg-source: info: unpacking r-bioc-gosemsim_2.20.0.orig.tar.gz dpkg-source: info: unpacking r-bioc-gosemsim_2.20.0-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-22451844 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-22451844 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-22451844 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package r-bioc-gosemsim dpkg-buildpackage: info: source version 2.20.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-gosemsim/ -O--buildsystem=R I: R Package: GOSemSim Version: 2.20.0 I: Building using R version 4.1.2-1ubuntu1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Thu, 25 Nov 2021 14:43:04 +0100 mkdir -p /<>/debian/r-bioc-gosemsim/usr/lib/R/site-library R CMD INSTALL -l /<>/debian/r-bioc-gosemsim/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 25 Nov 2021 14:43:04 +0100'" * installing *source* package ‘GOSemSim’ ... ** using staged installation ** libs make[1]: Entering directory '/<>/src' g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-QHZEeU/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ICmethod.cpp -o ICmethod.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-QHZEeU/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++14 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -o GOSemSim.so ICmethod.o RcppExports.o -L/usr/lib/R/lib -lR make[1]: Leaving directory '/<>/src' make[1]: Entering directory '/<>/src' make[1]: Leaving directory '/<>/src' installing to /<>/debian/r-bioc-gosemsim/usr/lib/R/site-library/00LOCK-r-bioc-gosemsim-2.20.0/00new/GOSemSim/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GOSemSim) Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 299. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 303. W: Ignoring specified R dependency: R (>= 3.5.0) I: Using r-bioc-annotationhub for Suggests:AnnotationHub I: Using r-cran-biocmanager for Suggests:BiocManager W: Cannot find a debian package for Suggests:clusterProfiler W: Cannot find a debian package for Suggests:DOSE I: Using r-cran-knitr for Suggests:knitr I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-bioc-org.hs.eg.db for Suggests:org.Hs.eg.db W: Cannot find a debian package for Suggests:prettydoc I: Using r-cran-testthat for Suggests:testthat I: Using r-cran-rocr for Suggests:ROCR I: Using r-bioc-annotationdbi for Imports:AnnotationDbi I: Using r-bioc-go.db for Imports:GO.db I: Using r-cran-rcpp for LinkingTo:Rcpp I: BioConductor API version: r-api-bioc-3.14 I: Use r-bioc-gosemsim as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R 33dac16bb0b18f0eecf079ae27299fee0f80000b dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing r-bioc-gosemsim (in debian/r-bioc-gosemsim); do_strip: , oemstrip: pkgstriptranslations: processing r-bioc-gosemsim-dbgsym (in debian/.debhelper/r-bioc-gosemsim/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-bioc-gosemsim/DEBIAN/control, package r-bioc-gosemsim, directory debian/r-bioc-gosemsim pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-bioc-gosemsim ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-bioc-gosemsim' in '../r-bioc-gosemsim_2.20.0-1_amd64.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/r-bioc-gosemsim/dbgsym-root/DEBIAN/control, package r-bioc-gosemsim-dbgsym, directory debian/.debhelper/r-bioc-gosemsim/dbgsym-root dpkg-deb: building package 'r-bioc-gosemsim-dbgsym' in 'debian/.debhelper/scratch-space/build-r-bioc-gosemsim/r-bioc-gosemsim-dbgsym_2.20.0-1_amd64.deb'. Renaming r-bioc-gosemsim-dbgsym_2.20.0-1_amd64.deb to r-bioc-gosemsim-dbgsym_2.20.0-1_amd64.ddeb dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../r-bioc-gosemsim_2.20.0-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-11-26T06:35:53Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-bioc-gosemsim_2.20.0-1_amd64.changes: --------------------------------------- Format: 1.8 Date: Thu, 25 Nov 2021 14:43:04 +0100 Source: r-bioc-gosemsim Binary: r-bioc-gosemsim Built-For-Profiles: noudeb Architecture: amd64 Version: 2.20.0-1 Distribution: jammy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: r-bioc-gosemsim - GO-terms semantic similarity measures Changes: r-bioc-gosemsim (2.20.0-1) unstable; urgency=medium . * Disable reprotest * New upstream version Checksums-Sha1: 9c33ab577c0c612cef8ed6395a895e16aaf0ac55 488670 r-bioc-gosemsim-dbgsym_2.20.0-1_amd64.ddeb 119263b9e255799411e0aeb25f6a3e8dfcb088f7 12141 r-bioc-gosemsim_2.20.0-1_amd64.buildinfo f0f20d78919bef2d576320d59ceeb94182c3afbd 882624 r-bioc-gosemsim_2.20.0-1_amd64.deb Checksums-Sha256: d4358a538285a4ec2e459396f2345abdc8d16b912db318cea7bd101fe8e9f6a5 488670 r-bioc-gosemsim-dbgsym_2.20.0-1_amd64.ddeb b8041022a83e98d311fb47a19b1ade79ec8cfb9bdeadeba59ea4f24d5a31366f 12141 r-bioc-gosemsim_2.20.0-1_amd64.buildinfo 896a74d1df425734384010681f21fc67dd9d3718b1d2c4df4f881f065dfa4345 882624 r-bioc-gosemsim_2.20.0-1_amd64.deb Files: 447225a0f0f4b6dd9100547ab91e327f 488670 debug optional r-bioc-gosemsim-dbgsym_2.20.0-1_amd64.ddeb e136a7e61bfe62d8e11052427ba7f730 12141 gnu-r optional r-bioc-gosemsim_2.20.0-1_amd64.buildinfo 757a1111801f584daa17a8a93b905189 882624 gnu-r optional r-bioc-gosemsim_2.20.0-1_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: r-bioc-gosemsim Binary: r-bioc-gosemsim r-bioc-gosemsim-dbgsym Architecture: amd64 Version: 2.20.0-1 Checksums-Md5: 447225a0f0f4b6dd9100547ab91e327f 488670 r-bioc-gosemsim-dbgsym_2.20.0-1_amd64.ddeb 757a1111801f584daa17a8a93b905189 882624 r-bioc-gosemsim_2.20.0-1_amd64.deb Checksums-Sha1: 9c33ab577c0c612cef8ed6395a895e16aaf0ac55 488670 r-bioc-gosemsim-dbgsym_2.20.0-1_amd64.ddeb f0f20d78919bef2d576320d59ceeb94182c3afbd 882624 r-bioc-gosemsim_2.20.0-1_amd64.deb Checksums-Sha256: d4358a538285a4ec2e459396f2345abdc8d16b912db318cea7bd101fe8e9f6a5 488670 r-bioc-gosemsim-dbgsym_2.20.0-1_amd64.ddeb 896a74d1df425734384010681f21fc67dd9d3718b1d2c4df4f881f065dfa4345 882624 r-bioc-gosemsim_2.20.0-1_amd64.deb Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Fri, 26 Nov 2021 06:35:53 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.1), autopoint (= 0.21-4ubuntu3), autotools-dev (= 20180224.1+nmu1), base-files (= 12ubuntu2), base-passwd (= 3.5.52), bash (= 5.1-3ubuntu2), binutils (= 2.37-10ubuntu1), binutils-common (= 2.37-10ubuntu1), binutils-x86-64-linux-gnu (= 2.37-10ubuntu1), bsdextrautils (= 2.37.2-4ubuntu1), bsdutils (= 1:2.37.2-4ubuntu1), build-essential (= 12.9ubuntu2), bzip2 (= 1.0.8-4ubuntu4), ca-certificates (= 20211016), coreutils (= 8.32-4ubuntu3), cpp (= 4:11.2.0-1ubuntu1), cpp-11 (= 11.2.0-12ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-3), dctrl-tools (= 2.24-3build1), debconf (= 1.5.79), debhelper (= 13.5.2ubuntu1), debianutils (= 5.5-1), debugedit (= 1:5.0-3), dh-autoreconf (= 20), dh-r (= 20210218ubuntu1), dh-strip-nondeterminism (= 1.12.1-1), diffutils (= 1:3.8-0ubuntu1), dpkg (= 1.20.9ubuntu2), dpkg-dev (= 1.20.9ubuntu2), dwz (= 0.14-1build1), file (= 1:5.41-2), findutils (= 4.8.0-1ubuntu2), fontconfig (= 2.13.1-4.2ubuntu4), fontconfig-config (= 2.13.1-4.2ubuntu4), fonts-dejavu-core (= 2.37-2build1), g++ (= 4:11.2.0-1ubuntu1), g++-11 (= 11.2.0-12ubuntu1), gcc (= 4:11.2.0-1ubuntu1), gcc-11 (= 11.2.0-12ubuntu1), gcc-11-base (= 11.2.0-12ubuntu1), gettext (= 0.21-4ubuntu3), gettext-base (= 0.21-4ubuntu3), gfortran (= 4:11.2.0-1ubuntu1), gfortran-11 (= 11.2.0-12ubuntu1), grep (= 3.7-1), groff-base (= 1.22.4-7), gzip (= 1.10-4ubuntu2), hostname (= 3.23ubuntu1), icu-devtools (= 67.1-7ubuntu1), init-system-helpers (= 1.60build1), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-10ubuntu2), libalgorithm-c3-perl (= 0.11-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.2.0-12ubuntu1), libatomic1 (= 11.2.0-12ubuntu1), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0-2ubuntu3), libaudit1 (= 1:3.0-2ubuntu3), libb-hooks-endofscope-perl (= 0.25-1), libb-hooks-op-check-perl (= 0.22-1build4), libbinutils (= 2.37-10ubuntu1), libblas-dev (= 3.9.0-3ubuntu3), libblas3 (= 3.9.0-3ubuntu3), libblkid1 (= 2.37.2-4ubuntu1), libbrotli1 (= 1.0.9-2build4), libbsd0 (= 0.11.3-1ubuntu3), libbz2-1.0 (= 1.0.8-4ubuntu4), libbz2-dev (= 1.0.8-4ubuntu4), libc-bin (= 2.34-0ubuntu3), libc-dev-bin (= 2.34-0ubuntu3), libc6 (= 2.34-0ubuntu3), libc6-dev (= 2.34-0ubuntu3), libcairo2 (= 1.16.0-5ubuntu2), libcap-ng0 (= 0.7.9-2.2build2), libcap2 (= 1:2.44-1build2), libcc1-0 (= 11.2.0-12ubuntu1), libclass-c3-perl (= 0.35-1), libclass-load-perl (= 0.25-1), libclass-load-xs-perl (= 0.10-1build6), libcom-err2 (= 1.46.4-1ubuntu1), libcrypt-dev (= 1:4.4.26-1), libcrypt1 (= 1:4.4.26-1), libctf-nobfd0 (= 2.37-10ubuntu1), libctf0 (= 2.37-10ubuntu1), libcurl3-gnutls (= 7.74.0-1.3ubuntu2), libcurl4 (= 7.74.0-1.3ubuntu2), libdata-optlist-perl (= 0.112-1), libdatrie1 (= 0.2.13-1ubuntu3), libdb5.3 (= 5.3.28+dfsg1-0.8ubuntu2), libdebconfclient0 (= 0.256ubuntu4), libdebhelper-perl (= 13.5.2ubuntu1), libdeflate0 (= 1.8-1ubuntu1), libdevel-callchecker-perl (= 0.008-1ubuntu3), libdevel-globaldestruction-perl (= 0.14-1.1), libdevel-overloadinfo-perl (= 0.007-1), libdevel-stacktrace-perl (= 2.0400-1), libdist-checkconflicts-perl (= 0.11-1.1), libdpkg-perl (= 1.20.9ubuntu2), libdw1 (= 0.186-1), libdynaloader-functions-perl (= 0.003-1.1), libelf1 (= 0.186-1), libencode-locale-perl (= 1.05-1.1), libeval-closure-perl (= 0.14-1), libexpat1 (= 2.4.1-3), libffi8 (= 3.4.2-1ubuntu5), libfile-stripnondeterminism-perl (= 1.12.1-1), libfile-which-perl (= 1.23-1), libfontconfig1 (= 2.13.1-4.2ubuntu4), libfreetype6 (= 2.11.0+dfsg-1), libfribidi0 (= 1.0.8-2ubuntu2), libgcc-11-dev (= 11.2.0-12ubuntu1), libgcc-s1 (= 11.2.0-12ubuntu1), libgcrypt20 (= 1.9.4-3ubuntu2), libgdbm-compat4 (= 1.22-1), libgdbm6 (= 1.22-1), libgfortran-11-dev (= 11.2.0-12ubuntu1), libgfortran5 (= 11.2.0-12ubuntu1), libglib2.0-0 (= 2.70.1-1), libgmp10 (= 2:6.2.1+dfsg-1ubuntu3), libgnutls30 (= 3.7.2-2ubuntu1), libgomp1 (= 11.2.0-12ubuntu1), libgpg-error0 (= 1.42-3), libgraphite2-3 (= 1.3.14-1build1), libgssapi-krb5-2 (= 1.18.3-7), libharfbuzz0b (= 2.7.4-1ubuntu2), libhogweed6 (= 3.7.3-1build1), libhttp-date-perl (= 6.05-1), libhttp-message-perl (= 6.35-1), libice6 (= 2:1.0.10-1build1), libicu-dev (= 67.1-7ubuntu1), libicu67 (= 67.1-7ubuntu1), libidn2-0 (= 2.3.2-2), libio-html-perl (= 1.004-2), libisl23 (= 0.24-2), libitm1 (= 11.2.0-12ubuntu1), libjbig0 (= 2.1-3.1build2), libjpeg-dev (= 8c-2ubuntu8), libjpeg-turbo8 (= 2.1.1-0ubuntu1), libjpeg-turbo8-dev (= 2.1.1-0ubuntu1), libjpeg8 (= 8c-2ubuntu8), libjpeg8-dev (= 8c-2ubuntu8), libk5crypto3 (= 1.18.3-7), libkeyutils1 (= 1.6.1-2ubuntu2), libkrb5-3 (= 1.18.3-7), libkrb5support0 (= 1.18.3-7), liblapack-dev (= 3.9.0-3ubuntu3), liblapack3 (= 3.9.0-3ubuntu3), libldap-2.5-0 (= 2.5.6+dfsg-1~exp1ubuntu1), liblsan0 (= 11.2.0-12ubuntu1), liblwp-mediatypes-perl (= 6.04-1), liblz4-1 (= 1.9.3-2build1), liblzma-dev (= 5.2.5-2build1), liblzma5 (= 5.2.5-2build1), libmagic-mgc (= 1:5.41-2), libmagic1 (= 1:5.41-2), libmd0 (= 1.0.4-1), libmodule-implementation-perl (= 0.09-1.1), libmodule-runtime-conflicts-perl (= 0.003-1.1), libmodule-runtime-perl (= 0.016-1), libmoose-perl (= 2.2200-1), libmount1 (= 2.37.2-4ubuntu1), libmpc3 (= 1.2.1-1), libmpfr6 (= 4.1.0-3build2), libmro-compat-perl (= 0.13-1), libnamespace-clean-perl (= 0.27-1), libncurses-dev (= 6.3-1), libncurses5-dev (= 6.3-1), libncurses6 (= 6.3-1), libncursesw6 (= 6.3-1), libnettle8 (= 3.7.3-1build1), libnghttp2-14 (= 1.43.0-1build1), libnsl-dev (= 1.3.0-2build1), libnsl2 (= 1.3.0-2build1), libp11-kit0 (= 0.24.0-5), libpackage-deprecationmanager-perl (= 0.17-1.1), libpackage-stash-perl (= 0.39-1), libpackage-stash-xs-perl (= 0.29-1build4), libpam-modules (= 1.4.0-10ubuntu1), libpam-modules-bin (= 1.4.0-10ubuntu1), libpam-runtime (= 1.4.0-10ubuntu1), libpam0g (= 1.4.0-10ubuntu1), libpango-1.0-0 (= 1.48.10+ds1-1), libpangocairo-1.0-0 (= 1.48.10+ds1-1), libpangoft2-1.0-0 (= 1.48.10+ds1-1), libpaper-utils (= 1.1.28build1), libpaper1 (= 1.1.28build1), libparams-classify-perl (= 0.015-1build4), libparams-util-perl (= 1.102-1build2), libpcre16-3 (= 2:8.39-13build4), libpcre2-16-0 (= 10.39-3), libpcre2-32-0 (= 10.39-3), libpcre2-8-0 (= 10.39-3), libpcre2-dev (= 10.39-3), libpcre2-posix3 (= 10.39-3), libpcre3 (= 2:8.39-13build4), libpcre3-dev (= 2:8.39-13build4), libpcre32-3 (= 2:8.39-13build4), libpcrecpp0v5 (= 2:8.39-13build4), libperl5.32 (= 5.32.1-3ubuntu3), libpipeline1 (= 1.5.4-1), libpixman-1-0 (= 0.40.0-1build3), libpng-dev (= 1.6.37-3build4), libpng16-16 (= 1.6.37-3build4), libpsl5 (= 0.21.0-1.2build1), libquadmath0 (= 11.2.0-12ubuntu1), libreadline-dev (= 8.1-2build1), libreadline8 (= 8.1-2build1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build3), libsasl2-2 (= 2.1.27+dfsg2-2build1), libsasl2-modules-db (= 2.1.27+dfsg2-2build1), libscalar-list-utils-perl (= 1:1.59-1), libseccomp2 (= 2.5.2-2ubuntu2), libselinux1 (= 3.3-1), libsigsegv2 (= 2.13-1ubuntu2), libsm6 (= 2:1.2.3-1build1), libsmartcols1 (= 2.37.2-4ubuntu1), libssh-4 (= 0.9.6-1), libssl1.1 (= 1.1.1l-1ubuntu1), libssl3 (= 3.0.0-1ubuntu1), libstdc++-11-dev (= 11.2.0-12ubuntu1), libstdc++6 (= 11.2.0-12ubuntu1), libsub-exporter-perl (= 0.988-1), libsub-exporter-progressive-perl (= 0.001013-1), libsub-identify-perl (= 0.14-1build4), libsub-install-perl (= 0.928-1.1), libsub-name-perl (= 0.26-1build2), libsub-override-perl (= 0.09-2), libswitch-perl (= 2.17-2.1), libsystemd0 (= 248.3-1ubuntu8), libtasn1-6 (= 4.18.0-4), libtcl8.6 (= 8.6.12+dfsg-1), libthai-data (= 0.1.28-4.1), libthai0 (= 0.1.28-4.1), libtiff5 (= 4.3.0-2), libtimedate-perl (= 2.3300-2), libtinfo6 (= 6.3-1), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtk8.6 (= 8.6.12-1), libtool (= 2.4.6-15build1), libtry-tiny-perl (= 0.30-1), libtsan0 (= 11.2.0-12ubuntu1), libubsan1 (= 11.2.0-12ubuntu1), libuchardet0 (= 0.0.7-1build1), libudev1 (= 248.3-1ubuntu8), libunistring2 (= 0.9.10-6), liburi-perl (= 5.10-1), libuuid1 (= 2.37.2-4ubuntu1), libvariable-magic-perl (= 0.62-1build4), libwebp6 (= 0.6.1-2.1build1), libwww-curl-perl (= 4.17-7build1), libwww-curl-simple-perl (= 0.100191-2), libx11-6 (= 2:1.7.2-2), libx11-data (= 2:1.7.2-2), libxau6 (= 1:1.0.9-1build4), libxcb-render0 (= 1.14-3ubuntu2), libxcb-shm0 (= 1.14-3ubuntu2), libxcb1 (= 1.14-3ubuntu2), libxdmcp6 (= 1:1.1.3-0ubuntu4), libxext6 (= 2:1.3.4-1), libxft2 (= 2.3.3-0ubuntu4), libxml2 (= 2.9.12+dfsg-5), libxmuu1 (= 2:1.1.3-0ubuntu2), libxrender1 (= 1:0.9.10-1build3), libxss1 (= 1:1.2.3-1build1), libxt6 (= 1:1.2.0-1build1), libzstd1 (= 1.4.8+dfsg-3), linux-libc-dev (= 5.15.0-12.12), littler (= 0.3.14-1), login (= 1:4.8.1-1ubuntu10), lsb-base (= 11.1.0ubuntu3), lto-disabled-list (= 16), m4 (= 1.4.18-5ubuntu1), make (= 4.3-4ubuntu2), man-db (= 2.9.4-2build1), mawk (= 1.3.4.20200120-2build1), ncurses-base (= 6.3-1), ncurses-bin (= 6.3-1), openssl (= 3.0.0-1ubuntu1), patch (= 2.7.6-7build1), perl (= 5.32.1-3ubuntu3), perl-base (= 5.32.1-3ubuntu3), perl-modules-5.32 (= 5.32.1-3ubuntu3), pkg-config (= 0.29.2-1ubuntu2), po-debconf (= 1.0.21+nmu1), r-base-core (= 4.1.2-1ubuntu1), r-base-dev (= 4.1.2-1ubuntu1), r-bioc-annotationdbi (= 1.56.2-1), r-bioc-biobase (= 2.54.0-1), r-bioc-biocgenerics (= 0.40.0-1), r-bioc-biostrings (= 2.62.0-1), r-bioc-genomeinfodb (= 1.30.0-1), r-bioc-genomeinfodbdata (= 1.2.6-1), r-bioc-go.db (= 3.13.0-1), r-bioc-iranges (= 2.28.0-1), r-bioc-keggrest (= 1.34.0+dfsg-1), r-bioc-s4vectors (= 0.32.3-1), r-bioc-xvector (= 0.34.0-1), r-bioc-zlibbioc (= 1.40.0+dfsg-1), r-cran-askpass (= 1.1-2), r-cran-bit (= 4.0.4+dfsg-1), r-cran-bit64 (= 4.0.5-1), r-cran-bitops (= 1.0-7-1), r-cran-blob (= 1.2.2-1), r-cran-cachem (= 1.0.6-1), r-cran-crayon (= 1.4.2-1), r-cran-curl (= 4.3.2+dfsg-1), r-cran-dbi (= 1.1.1-1), r-cran-ellipsis (= 0.3.2-2), r-cran-fastmap (= 1.1.0-1), r-cran-glue (= 1.5.0-1), r-cran-httr (= 1.4.2-1), r-cran-jsonlite (= 1.7.2+dfsg-1), r-cran-littler (= 0.3.14-1), r-cran-memoise (= 2.0.0-1), r-cran-mime (= 0.12-1), r-cran-openssl (= 1.4.5+dfsg-1build1), r-cran-pkgconfig (= 2.0.3-2build1), r-cran-pkgkitten (= 0.2.2-2), r-cran-plogr (= 0.2.0-3build1), r-cran-png (= 0.1-7-4), r-cran-r6 (= 2.5.1-1), r-cran-rcpp (= 1.0.7-2), r-cran-rcurl (= 1.98-1.5-1), r-cran-rlang (= 0.4.12-2), r-cran-rsqlite (= 2.2.8-1), r-cran-sys (= 3.4-1), r-cran-vctrs (= 0.3.8-1ubuntu1), readline-common (= 8.1-2build1), rpcsvc-proto (= 1.4.2-0ubuntu5), sed (= 4.8-1), sensible-utils (= 0.0.17), sysvinit-utils (= 2.96-7ubuntu2), tar (= 1.34+dfsg-1build2), tzdata (= 2021e-1ubuntu1), ucf (= 3.0043), unzip (= 6.0-26ubuntu2), util-linux (= 2.37.2-4ubuntu1), x11-common (= 1:7.7+23ubuntu1), xauth (= 1:1.1-1build1), xdg-utils (= 1.1.3-4.1ubuntu1), xz-utils (= 5.2.5-2build1), zip (= 3.0-12build1), zlib1g (= 1:1.2.11.dfsg-2ubuntu7), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu7) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1637847784" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-bioc-gosemsim_2.20.0-1_amd64.deb ---------------------------------- new Debian package, version 2.0. size 882624 bytes: control archive=1756 bytes. 1141 bytes, 18 lines control 2563 bytes, 32 lines md5sums Package: r-bioc-gosemsim Version: 2.20.0-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian R Packages Maintainers Installed-Size: 1049 Depends: r-base-core (>= 4.1.2-1ubuntu1), r-api-4.0, r-api-bioc-3.14, r-bioc-annotationdbi, r-bioc-go.db, r-cran-rcpp, libc6 (>= 2.29), libgcc-s1 (>= 3.0), libstdc++6 (>= 5.2) Suggests: r-bioc-annotationhub, r-cran-biocmanager, r-cran-knitr, r-cran-rmarkdown, r-bioc-org.hs.eg.db, r-cran-testthat, r-cran-rocr Section: gnu-r Priority: optional Homepage: https://bioconductor.org/packages/GOSemSim/ Description: GO-terms semantic similarity measures The semantic comparisons of Gene Ontology (GO) annotations provide quantitative ways to compute similarities between genes and gene groups, and have became important basis for many bioinformatics analysis approaches. GOSemSim is an R package for semantic similarity computation among GO terms, sets of GO terms, gene products and gene clusters. 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./usr/share/doc/r-bioc-gosemsim/changelog.Debian.gz -rw-r--r-- root/root 9686 2021-11-25 13:43 ./usr/share/doc/r-bioc-gosemsim/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: n/a Build-Time: 49 Distribution: jammy-proposed Host Architecture: amd64 Install-Time: 30 Job: r-bioc-gosemsim_2.20.0-1.dsc Machine Architecture: amd64 Package: r-bioc-gosemsim Package-Time: 80 Source-Version: 2.20.0-1 Space: n/a Status: successful Version: 2.20.0-1 -------------------------------------------------------------------------------- Finished at 2021-11-26T06:35:53Z Build needed 00:01:20, no disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=jammy --arch=amd64 PACKAGEBUILD-22451844 Scanning for processes to kill in build PACKAGEBUILD-22451844