https://launchpad.net/ubuntu/+source/r-bioc-gosemsim/2.20.0-1/+build/22451845 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-003 4.15.0-162-generic #170-Ubuntu SMP Mon Oct 18 11:28:54 UTC 2021 aarch64 Buildd toolchain package versions: launchpad-buildd_204~508~ubuntu18.04.1 python3-lpbuildd_204~508~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.9 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 26 Nov 06:32:20 ntpdate[1738]: adjust time server 10.211.37.1 offset -0.001794 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=jammy --arch=arm64 PACKAGEBUILD-22451845 --image-type chroot /home/buildd/filecache-default/d7d0133902b8cc1df688a841d4b96e994eeac2e0 Creating target for build PACKAGEBUILD-22451845 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=jammy --arch=arm64 PACKAGEBUILD-22451845 Starting target for build PACKAGEBUILD-22451845 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=jammy --arch=arm64 PACKAGEBUILD-22451845 'deb http://ftpmaster.internal/ubuntu jammy main universe' 'deb http://ftpmaster.internal/ubuntu jammy-security main universe' 'deb http://ftpmaster.internal/ubuntu jammy-updates main universe' 'deb http://ftpmaster.internal/ubuntu jammy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-22451845 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=jammy --arch=arm64 PACKAGEBUILD-22451845 Updating target for build PACKAGEBUILD-22451845 Get:1 http://ftpmaster.internal/ubuntu jammy InRelease [270 kB] Get:2 http://ftpmaster.internal/ubuntu jammy-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed InRelease [121 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main arm64 Packages [1371 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main Translation-en [511 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/universe arm64 Packages [13.4 MB] Get:8 http://ftpmaster.internal/ubuntu jammy/universe Translation-en [5556 kB] Get:9 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 Packages [173 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main Translation-en [60.6 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/universe arm64 Packages [912 kB] Get:12 http://ftpmaster.internal/ubuntu jammy-proposed/universe Translation-en [431 kB] Fetched 23.0 MB in 6s (4046 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libsepol1 Use 'sudo apt autoremove' to remove it. The following packages will be REMOVED: libsemanage1* The following NEW packages will be installed: libsemanage2 libsepol2 libssl3 The following packages will be upgraded: apt base-files binutils binutils-aarch64-linux-gnu binutils-common bsdutils ca-certificates cpp-11 dash debconf debianutils e2fsprogs g++-11 gcc-11 gcc-11-base gpg gpg-agent gpgconf gpgv grep libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libattr1 libbinutils libblkid1 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libext2fs2 libgcc-11-dev libgcc-s1 libgcrypt20 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libhwasan0 libidn2-0 libip4tc2 libisl23 libitm1 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 liblsan0 libmount1 libmpc3 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libseccomp2 libselinux1 libsemanage-common libsmartcols1 libsqlite3-0 libss2 libstdc++-11-dev libstdc++6 libtasn1-6 libtinfo6 libtsan0 libubsan1 libuuid1 libzstd1 linux-libc-dev lockfile-progs login logsave make mount ncurses-base ncurses-bin openssl passwd pkgbinarymangler sed sensible-utils tzdata usrmerge util-linux 93 upgraded, 3 newly installed, 1 to remove and 0 not upgraded. Need to get 74.3 MB of archives. After this operation, 380 MB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu jammy/main arm64 debconf all 1.5.79 [126 kB] Get:2 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libpam0g arm64 1.4.0-10ubuntu1 [61.2 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libcrypt-dev arm64 1:4.4.26-1 [119 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libcrypt1 arm64 1:4.4.26-1 [87.0 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main arm64 base-files arm64 12ubuntu2 [63.2 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main arm64 bsdutils arm64 1:2.37.2-4ubuntu1 [84.5 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/main arm64 debianutils arm64 5.5-1 [77.5 kB] Get:8 http://ftpmaster.internal/ubuntu jammy/main arm64 dash arm64 0.5.11+git20210903+057cd650a4ed-3 [91.7 kB] Get:9 http://ftpmaster.internal/ubuntu jammy/main arm64 grep arm64 3.7-1 [152 kB] Get:10 http://ftpmaster.internal/ubuntu jammy/main arm64 login arm64 1:4.8.1-1ubuntu10 [186 kB] Get:11 http://ftpmaster.internal/ubuntu jammy/main arm64 libncurses6 arm64 6.3-1 [108 kB] Get:12 http://ftpmaster.internal/ubuntu jammy/main arm64 libncursesw6 arm64 6.3-1 [142 kB] Get:13 http://ftpmaster.internal/ubuntu jammy/main arm64 libtinfo6 arm64 6.3-1 [104 kB] Get:14 http://ftpmaster.internal/ubuntu jammy/main arm64 ncurses-bin arm64 6.3-1 [183 kB] Get:15 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 sed arm64 4.8-1 [186 kB] Get:16 http://ftpmaster.internal/ubuntu jammy/main arm64 libblkid1 arm64 2.37.2-4ubuntu1 [103 kB] Get:17 http://ftpmaster.internal/ubuntu jammy/main arm64 libpcre2-8-0 arm64 10.39-3 [201 kB] Get:18 http://ftpmaster.internal/ubuntu jammy/main arm64 libselinux1 arm64 3.3-1 [74.5 kB] Get:19 http://ftpmaster.internal/ubuntu jammy/main arm64 libmount1 arm64 2.37.2-4ubuntu1 [120 kB] Get:20 http://ftpmaster.internal/ubuntu jammy/main arm64 util-linux arm64 2.37.2-4ubuntu1 [1059 kB] Get:21 http://ftpmaster.internal/ubuntu jammy/main arm64 ncurses-base all 6.3-1 [19.9 kB] Get:22 http://ftpmaster.internal/ubuntu jammy/main arm64 libgpg-error0 arm64 1.42-3 [67.7 kB] Get:23 http://ftpmaster.internal/ubuntu jammy/main arm64 libgcrypt20 arm64 1.9.4-3ubuntu2 [456 kB] Get:24 http://ftpmaster.internal/ubuntu jammy/main arm64 libcc1-0 arm64 11.2.0-12ubuntu1 [54.1 kB] Get:25 http://ftpmaster.internal/ubuntu jammy/main arm64 gcc-11-base arm64 11.2.0-12ubuntu1 [20.7 kB] Get:26 http://ftpmaster.internal/ubuntu jammy/main arm64 libgcc-s1 arm64 11.2.0-12ubuntu1 [39.3 kB] Get:27 http://ftpmaster.internal/ubuntu jammy/main arm64 libgomp1 arm64 11.2.0-12ubuntu1 [115 kB] Get:28 http://ftpmaster.internal/ubuntu jammy/main arm64 libitm1 arm64 11.2.0-12ubuntu1 [28.4 kB] Get:29 http://ftpmaster.internal/ubuntu jammy/main arm64 libatomic1 arm64 11.2.0-12ubuntu1 [10.8 kB] Get:30 http://ftpmaster.internal/ubuntu jammy/main arm64 libasan6 arm64 11.2.0-12ubuntu1 [2228 kB] Get:31 http://ftpmaster.internal/ubuntu jammy/main arm64 liblsan0 arm64 11.2.0-12ubuntu1 [942 kB] Get:32 http://ftpmaster.internal/ubuntu jammy/main arm64 libtsan0 arm64 11.2.0-12ubuntu1 [2232 kB] Get:33 http://ftpmaster.internal/ubuntu jammy/main arm64 libubsan1 arm64 11.2.0-12ubuntu1 [908 kB] Get:34 http://ftpmaster.internal/ubuntu jammy/main arm64 libhwasan0 arm64 11.2.0-12ubuntu1 [1010 kB] Get:35 http://ftpmaster.internal/ubuntu jammy/main arm64 g++-11 arm64 11.2.0-12ubuntu1 [11.1 MB] Get:36 http://ftpmaster.internal/ubuntu jammy/main arm64 libstdc++-11-dev arm64 11.2.0-12ubuntu1 [2099 kB] Get:37 http://ftpmaster.internal/ubuntu jammy/main arm64 libgcc-11-dev arm64 11.2.0-12ubuntu1 [1150 kB] Get:38 http://ftpmaster.internal/ubuntu jammy/main arm64 gcc-11 arm64 11.2.0-12ubuntu1 [19.4 MB] Get:39 http://ftpmaster.internal/ubuntu jammy/main arm64 cpp-11 arm64 11.2.0-12ubuntu1 [9734 kB] Get:40 http://ftpmaster.internal/ubuntu jammy/main arm64 libstdc++6 arm64 11.2.0-12ubuntu1 [623 kB] Get:41 http://ftpmaster.internal/ubuntu jammy/main arm64 libisl23 arm64 0.24-2 [690 kB] Get:42 http://ftpmaster.internal/ubuntu jammy/main arm64 libmpc3 arm64 1.2.1-1 [48.1 kB] Get:43 http://ftpmaster.internal/ubuntu jammy/main arm64 libzstd1 arm64 1.4.8+dfsg-3 [311 kB] Get:44 http://ftpmaster.internal/ubuntu jammy/main arm64 libctf0 arm64 2.37-10ubuntu1 [102 kB] Get:45 http://ftpmaster.internal/ubuntu jammy/main arm64 libctf-nobfd0 arm64 2.37-10ubuntu1 [106 kB] Get:46 http://ftpmaster.internal/ubuntu jammy/main arm64 libbinutils arm64 2.37-10ubuntu1 [733 kB] Get:47 http://ftpmaster.internal/ubuntu jammy/main arm64 binutils-common arm64 2.37-10ubuntu1 [213 kB] Get:48 http://ftpmaster.internal/ubuntu jammy/main arm64 binutils arm64 2.37-10ubuntu1 [3160 B] Get:49 http://ftpmaster.internal/ubuntu jammy/main arm64 binutils-aarch64-linux-gnu arm64 2.37-10ubuntu1 [3214 kB] Get:50 http://ftpmaster.internal/ubuntu jammy/main arm64 libapt-pkg6.0 arm64 2.3.13 [864 kB] Get:51 http://ftpmaster.internal/ubuntu jammy/main arm64 gpgv arm64 2.2.27-2ubuntu1 [133 kB] Get:52 http://ftpmaster.internal/ubuntu jammy/main arm64 libidn2-0 arm64 2.3.2-2 [67.1 kB] Get:53 http://ftpmaster.internal/ubuntu jammy/main arm64 libp11-kit0 arm64 0.24.0-5 [231 kB] Get:54 http://ftpmaster.internal/ubuntu jammy/main arm64 libtasn1-6 arm64 4.18.0-4 [42.6 kB] Get:55 http://ftpmaster.internal/ubuntu jammy/main arm64 libgnutls30 arm64 3.7.2-2ubuntu1 [917 kB] Get:56 http://ftpmaster.internal/ubuntu jammy/main arm64 libseccomp2 arm64 2.5.2-2ubuntu2 [47.9 kB] Get:57 http://ftpmaster.internal/ubuntu jammy/main arm64 apt arm64 2.3.13 [1353 kB] Get:58 http://ftpmaster.internal/ubuntu jammy/main arm64 libsepol2 arm64 3.3-1 [274 kB] Get:59 http://ftpmaster.internal/ubuntu jammy/main arm64 libsemanage-common all 3.3-1 [10.1 kB] Get:60 http://ftpmaster.internal/ubuntu jammy/main arm64 libsemanage2 arm64 3.3-1 [89.6 kB] Get:61 http://ftpmaster.internal/ubuntu jammy/main arm64 passwd arm64 1:4.8.1-1ubuntu10 [750 kB] Get:62 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libpam-modules-bin arm64 1.4.0-10ubuntu1 [38.4 kB] Get:63 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libpam-modules arm64 1.4.0-10ubuntu1 [277 kB] Get:64 http://ftpmaster.internal/ubuntu jammy/main arm64 logsave arm64 1.46.4-1ubuntu1 [10.7 kB] Get:65 http://ftpmaster.internal/ubuntu jammy/main arm64 libext2fs2 arm64 1.46.4-1ubuntu1 [212 kB] Get:66 http://ftpmaster.internal/ubuntu jammy/main arm64 e2fsprogs arm64 1.46.4-1ubuntu1 [586 kB] Get:67 http://ftpmaster.internal/ubuntu jammy/main arm64 mount arm64 2.37.2-4ubuntu1 [113 kB] Get:68 http://ftpmaster.internal/ubuntu jammy/main arm64 libattr1 arm64 1:2.5.1-1 [13.3 kB] Get:69 http://ftpmaster.internal/ubuntu jammy/main arm64 libcom-err2 arm64 1.46.4-1ubuntu1 [9954 B] Get:70 http://ftpmaster.internal/ubuntu jammy/main arm64 libk5crypto3 arm64 1.18.3-7 [91.5 kB] Get:71 http://ftpmaster.internal/ubuntu jammy/main arm64 libkrb5support0 arm64 1.18.3-7 [32.3 kB] Get:72 http://ftpmaster.internal/ubuntu jammy/main arm64 libkrb5-3 arm64 1.18.3-7 [357 kB] Get:73 http://ftpmaster.internal/ubuntu jammy/main arm64 libgssapi-krb5-2 arm64 1.18.3-7 [141 kB] Get:74 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libpam-runtime all 1.4.0-10ubuntu1 [40.2 kB] Get:75 http://ftpmaster.internal/ubuntu jammy/main arm64 libsmartcols1 arm64 2.37.2-4ubuntu1 [49.6 kB] Get:76 http://ftpmaster.internal/ubuntu jammy/main arm64 libuuid1 arm64 2.37.2-4ubuntu1 [23.8 kB] Get:77 http://ftpmaster.internal/ubuntu jammy/main arm64 libss2 arm64 1.46.4-1ubuntu1 [11.8 kB] Get:78 http://ftpmaster.internal/ubuntu jammy/main arm64 sensible-utils all 0.0.17 [20.1 kB] Get:79 http://ftpmaster.internal/ubuntu jammy/main arm64 usrmerge all 25ubuntu2 [54.7 kB] Get:80 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libssl3 arm64 3.0.0-1ubuntu1 [1753 kB] Get:81 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 openssl arm64 3.0.0-1ubuntu1 [1155 kB] Get:82 http://ftpmaster.internal/ubuntu jammy/main arm64 ca-certificates all 20211016 [148 kB] Get:83 http://ftpmaster.internal/ubuntu jammy/main arm64 libapparmor1 arm64 3.0.3-0ubuntu3 [37.4 kB] Get:84 http://ftpmaster.internal/ubuntu jammy/main arm64 libip4tc2 arm64 1.8.7-1ubuntu4 [19.8 kB] Get:85 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libkmod2 arm64 28-1ubuntu5 [46.4 kB] Get:86 http://ftpmaster.internal/ubuntu jammy/main arm64 libsqlite3-0 arm64 3.36.0-2 [638 kB] Get:87 http://ftpmaster.internal/ubuntu jammy/main arm64 tzdata all 2021e-1ubuntu1 [343 kB] Get:88 http://ftpmaster.internal/ubuntu jammy/main arm64 libgdbm6 arm64 1.22-1 [35.1 kB] Get:89 http://ftpmaster.internal/ubuntu jammy/main arm64 gpg arm64 2.2.27-2ubuntu1 [506 kB] Get:90 http://ftpmaster.internal/ubuntu jammy/main arm64 gpgconf arm64 2.2.27-2ubuntu1 [92.2 kB] Get:91 http://ftpmaster.internal/ubuntu jammy/main arm64 gpg-agent arm64 2.2.27-2ubuntu1 [204 kB] Get:92 http://ftpmaster.internal/ubuntu jammy/main arm64 libgdbm-compat4 arm64 1.22-1 [6370 B] 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RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-22451845 arm64 jammy-proposed -c chroot:build-PACKAGEBUILD-22451845 --arch=arm64 --dist=jammy-proposed --nolog r-bioc-gosemsim_2.20.0-1.dsc Initiating build PACKAGEBUILD-22451845 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-162-generic #170-Ubuntu SMP Mon Oct 18 11:28:54 UTC 2021 aarch64 sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-arm64-003.buildd +==============================================================================+ | r-bioc-gosemsim 2.20.0-1 (arm64) Fri, 26 Nov 2021 06:33:12 +0000 | +==============================================================================+ Package: r-bioc-gosemsim Version: 2.20.0-1 Source Version: 2.20.0-1 Distribution: jammy-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-22451845/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-bioc-gosemsim_2.20.0-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/r-bioc-gosemsim-IZ6fiQ/r-bioc-gosemsim-2.20.0' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-gosemsim-IZ6fiQ' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-NRYbRU/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-NRYbRU/apt_archive ./ InRelease Get:2 copy:/<>/resolver-NRYbRU/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-NRYbRU/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-NRYbRU/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-NRYbRU/apt_archive ./ Packages [432 B] Fetched 1738 B in 0s (59.5 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libsepol1 Use 'apt autoremove' to remove it. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 650 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-NRYbRU/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [650 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 650 B in 0s (59.7 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13416 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-annotationdbi, r-bioc-go.db, r-cran-rcpp Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-annotationdbi, r-bioc-go.db, r-cran-rcpp dpkg-deb: building package 'sbuild-build-depends-r-bioc-gosemsim-dummy' in '/<>/resolver-NRYbRU/apt_archive/sbuild-build-depends-r-bioc-gosemsim-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-gosemsim-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-NRYbRU/apt_archive ./ InRelease Get:2 copy:/<>/resolver-NRYbRU/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-NRYbRU/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-NRYbRU/apt_archive ./ Sources [536 B] Get:5 copy:/<>/resolver-NRYbRU/apt_archive ./ Packages [617 B] Fetched 2116 B in 0s (72.1 kB/s) Reading package lists... Reading package lists... Install r-bioc-gosemsim build dependencies (apt-based resolver) --------------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libsepol1 Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils dctrl-tools debhelper debugedit dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-11 groff-base icu-devtools intltool-debian libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdw1 libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-11-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu67 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libldap-2.5-0 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev librtmp1 libsasl2-2 libsasl2-modules-db libscalar-list-utils-perl libsigsegv2 libsm6 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp6 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db pkg-config po-debconf r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biostrings r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-go.db r-bioc-iranges r-bioc-keggrest r-bioc-s4vectors r-bioc-xvector r-bioc-zlibbioc r-cran-askpass r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-cachem r-cran-crayon r-cran-curl r-cran-dbi r-cran-ellipsis r-cran-fastmap r-cran-glue r-cran-httr r-cran-jsonlite r-cran-littler r-cran-memoise r-cran-mime r-cran-openssl r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-r6 r-cran-rcpp r-cran-rcurl r-cran-rlang r-cran-rsqlite r-cran-sys r-cran-vctrs ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc gfortran-11-doc libcoarrays-dev groff liblapack-doc icu-doc liblzma-doc ncurses-doc libscalar-number-perl readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk libbusiness-isbn-perl libwww-perl libcurl4-gnutls-dev m4-doc apparmor less www-browser libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo r-cran-runit r-bioc-org.hs.eg.db r-bioc-graph r-bioc-biocstyle r-cran-knitr r-bioc-all r-bioc-genomicranges r-bioc-delayedarray r-bioc-rsamtools r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-bioc-bsgenome r-bioc-genomicfeatures r-bioc-genomicalignments r-cran-markdown r-bioc-summarizedexperiment r-cran-matrix r-bioc-shortread r-cran-data.table r-cran-testthat r-cran-roxygen2 r-cran-rmarkdown r-cran-covr r-cran-pillar r-cran-rstudioapi r-cran-magrittr r-cran-rmysql r-cran-dplyr r-cran-forcats r-cran-ggplot2 r-cran-r.utils r-cran-stringr r-cran-waldo r-cran-withr r-cran-httpuv r-cran-jpeg r-cran-readr r-cran-xml2 r-cran-plyr r-cran-sf r-cran-getopt r-cran-digest r-cran-inline r-cran-xml r-cran-cli r-cran-gert r-cran-gh r-cran-hms r-cran-rvest r-cran-zeallot Recommended packages: devscripts cme git-buildpackage curl | wget | lynx bzip2-doc libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libclone-perl libldap-common libdevel-partialdump-perl libpng-tools publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl r-recommended r-doc-html r-cran-runit r-cran-testthat r-cran-withr r-cran-mockery r-cran-httpuv r-cran-webutils r-cran-sp r-cran-sodium r-cran-rmarkdown r-cran-dbitest r-cran-tibble r-cran-generics r-cran-xml2 r-cran-dplyr r-cran-waldo libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils dctrl-tools debhelper debugedit dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-11 groff-base icu-devtools intltool-debian libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdw1 libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-11-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu67 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libldap-2.5-0 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev librtmp1 libsasl2-2 libsasl2-modules-db libscalar-list-utils-perl libsigsegv2 libsm6 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp6 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db pkg-config po-debconf r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biostrings r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-go.db r-bioc-iranges r-bioc-keggrest r-bioc-s4vectors r-bioc-xvector r-bioc-zlibbioc r-cran-askpass r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-cachem r-cran-crayon r-cran-curl r-cran-dbi r-cran-ellipsis r-cran-fastmap r-cran-glue r-cran-httr r-cran-jsonlite r-cran-littler r-cran-memoise r-cran-mime r-cran-openssl r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-r6 r-cran-rcpp r-cran-rcurl r-cran-rlang r-cran-rsqlite r-cran-sys r-cran-vctrs sbuild-build-depends-r-bioc-gosemsim-dummy ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 213 newly installed, 0 to remove and 0 not upgraded. Need to get 160 MB of archives. After this operation, 426 MB of additional disk space will be used. 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dh-strip-nondeterminism all 1.12.1-1 [5200 B] Get:43 http://ftpmaster.internal/ubuntu jammy/main arm64 libdw1 arm64 0.186-1 [246 kB] Get:44 http://ftpmaster.internal/ubuntu jammy/main arm64 debugedit arm64 1:5.0-3 [46.3 kB] Get:45 http://ftpmaster.internal/ubuntu jammy/main arm64 dwz arm64 0.14-1build1 [102 kB] Get:46 http://ftpmaster.internal/ubuntu jammy/main arm64 gettext arm64 0.21-4ubuntu3 [775 kB] Get:47 http://ftpmaster.internal/ubuntu jammy/main arm64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:48 http://ftpmaster.internal/ubuntu jammy/main arm64 po-debconf all 1.0.21+nmu1 [233 kB] Get:49 http://ftpmaster.internal/ubuntu jammy/main arm64 debhelper all 13.5.2ubuntu1 [926 kB] Get:50 http://ftpmaster.internal/ubuntu jammy/main arm64 zip arm64 3.0-12build1 [173 kB] Get:51 http://ftpmaster.internal/ubuntu jammy/main arm64 unzip arm64 6.0-26ubuntu2 [171 kB] Get:52 http://ftpmaster.internal/ubuntu jammy/main arm64 libpaper1 arm64 1.1.28build1 [13.6 kB] Get:53 http://ftpmaster.internal/ubuntu jammy/main arm64 libpaper-utils arm64 1.1.28build1 [8494 B] Get:54 http://ftpmaster.internal/ubuntu jammy/main arm64 xdg-utils all 1.1.3-4.1ubuntu1 [62.2 kB] Get:55 http://ftpmaster.internal/ubuntu jammy/main arm64 libblas3 arm64 3.9.0-3ubuntu3 [138 kB] Get:56 http://ftpmaster.internal/ubuntu jammy/main arm64 libbrotli1 arm64 1.0.9-2build4 [314 kB] Get:57 http://ftpmaster.internal/ubuntu jammy/main arm64 libfreetype6 arm64 2.11.0+dfsg-1 [382 kB] Get:58 http://ftpmaster.internal/ubuntu jammy/main arm64 fonts-dejavu-core all 2.37-2build1 [1041 kB] Get:59 http://ftpmaster.internal/ubuntu jammy/main arm64 fontconfig-config all 2.13.1-4.2ubuntu4 [29.1 kB] Get:60 http://ftpmaster.internal/ubuntu jammy/main arm64 libfontconfig1 arm64 2.13.1-4.2ubuntu4 [135 kB] Get:61 http://ftpmaster.internal/ubuntu jammy/main arm64 libpixman-1-0 arm64 0.40.0-1build3 [160 kB] Get:62 http://ftpmaster.internal/ubuntu jammy/main arm64 libxcb-render0 arm64 1.14-3ubuntu2 [16.3 kB] Get:63 http://ftpmaster.internal/ubuntu jammy/main arm64 libxcb-shm0 arm64 1.14-3ubuntu2 [5862 B] Get:64 http://ftpmaster.internal/ubuntu jammy/main arm64 libxrender1 arm64 1:0.9.10-1build3 [18.8 kB] Get:65 http://ftpmaster.internal/ubuntu jammy/main arm64 libcairo2 arm64 1.16.0-5ubuntu2 [613 kB] Get:66 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg2-2build1 [21.2 kB] Get:67 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libsasl2-2 arm64 2.1.27+dfsg2-2build1 [55.6 kB] Get:68 http://ftpmaster.internal/ubuntu jammy/main arm64 libldap-2.5-0 arm64 2.5.6+dfsg-1~exp1ubuntu1 [184 kB] Get:69 http://ftpmaster.internal/ubuntu jammy/main arm64 libnghttp2-14 arm64 1.43.0-1build1 [75.3 kB] Get:70 http://ftpmaster.internal/ubuntu jammy/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2build3 [59.3 kB] Get:71 http://ftpmaster.internal/ubuntu jammy/main arm64 libssh-4 arm64 0.9.6-1 [184 kB] Get:72 http://ftpmaster.internal/ubuntu 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jammy/main arm64 libthai0 arm64 0.1.28-4.1 [18.3 kB] Get:83 http://ftpmaster.internal/ubuntu jammy/main arm64 libpango-1.0-0 arm64 1.48.10+ds1-1 [192 kB] Get:84 http://ftpmaster.internal/ubuntu jammy/main arm64 libpangoft2-1.0-0 arm64 1.48.10+ds1-1 [49.2 kB] Get:85 http://ftpmaster.internal/ubuntu jammy/main arm64 libpangocairo-1.0-0 arm64 1.48.10+ds1-1 [35.4 kB] Get:86 http://ftpmaster.internal/ubuntu jammy/main arm64 libtcl8.6 arm64 8.6.12+dfsg-1 [986 kB] Get:87 http://ftpmaster.internal/ubuntu jammy/main arm64 libdeflate0 arm64 1.8-1ubuntu1 [53.2 kB] Get:88 http://ftpmaster.internal/ubuntu jammy/main arm64 libjbig0 arm64 2.1-3.1build2 [28.7 kB] Get:89 http://ftpmaster.internal/ubuntu jammy/main arm64 libwebp6 arm64 0.6.1-2.1build1 [188 kB] Get:90 http://ftpmaster.internal/ubuntu jammy/main arm64 libtiff5 arm64 4.3.0-2 [180 kB] Get:91 http://ftpmaster.internal/ubuntu jammy/main arm64 libxft2 arm64 2.3.3-0ubuntu4 [40.5 kB] Get:92 http://ftpmaster.internal/ubuntu jammy/main arm64 x11-common all 1:7.7+23ubuntu1 [23.5 kB] Get:93 http://ftpmaster.internal/ubuntu jammy/main arm64 libxss1 arm64 1:1.2.3-1build1 [8354 B] Get:94 http://ftpmaster.internal/ubuntu jammy/main arm64 libtk8.6 arm64 8.6.12-1 [776 kB] Get:95 http://ftpmaster.internal/ubuntu jammy/main arm64 libice6 arm64 2:1.0.10-1build1 [41.8 kB] Get:96 http://ftpmaster.internal/ubuntu jammy/main arm64 libsm6 arm64 2:1.2.3-1build1 [16.3 kB] Get:97 http://ftpmaster.internal/ubuntu jammy/main arm64 libxt6 arm64 1:1.2.0-1build1 [170 kB] Get:98 http://ftpmaster.internal/ubuntu jammy/universe arm64 r-base-core arm64 4.1.2-1ubuntu1 [25.8 MB] Get:99 http://ftpmaster.internal/ubuntu jammy/main arm64 libgfortran-11-dev arm64 11.2.0-12ubuntu1 [467 kB] Get:100 http://ftpmaster.internal/ubuntu jammy/main arm64 gfortran-11 arm64 11.2.0-12ubuntu1 [11.0 MB] Get:101 http://ftpmaster.internal/ubuntu jammy/main arm64 gfortran arm64 4:11.2.0-1ubuntu1 [1168 B] Get:102 http://ftpmaster.internal/ubuntu jammy/main arm64 libblas-dev arm64 3.9.0-3ubuntu3 [107 kB] Get:103 http://ftpmaster.internal/ubuntu jammy/main arm64 liblapack-dev arm64 3.9.0-3ubuntu3 [3264 kB] Get:104 http://ftpmaster.internal/ubuntu jammy/main arm64 libncurses-dev arm64 6.3-1 [381 kB] Get:105 http://ftpmaster.internal/ubuntu jammy/main arm64 libncurses5-dev arm64 6.3-1 [780 B] Get:106 http://ftpmaster.internal/ubuntu jammy/main arm64 libreadline-dev arm64 8.1-2build1 [178 kB] Get:107 http://ftpmaster.internal/ubuntu jammy/main arm64 libjpeg-turbo8-dev arm64 2.1.1-0ubuntu1 [246 kB] Get:108 http://ftpmaster.internal/ubuntu jammy/main arm64 libjpeg8-dev arm64 8c-2ubuntu8 [1550 B] Get:109 http://ftpmaster.internal/ubuntu jammy/main arm64 libjpeg-dev arm64 8c-2ubuntu8 [1546 B] Get:110 http://ftpmaster.internal/ubuntu jammy/main arm64 libpcre2-16-0 arm64 10.39-3 [184 kB] Get:111 http://ftpmaster.internal/ubuntu jammy/main arm64 libpcre2-32-0 arm64 10.39-3 [176 kB] Get:112 http://ftpmaster.internal/ubuntu jammy/main arm64 libpcre2-posix3 arm64 10.39-3 [5950 B] Get:113 http://ftpmaster.internal/ubuntu jammy/main arm64 libpcre2-dev arm64 10.39-3 [662 kB] Get:114 http://ftpmaster.internal/ubuntu jammy/main arm64 libpcre16-3 arm64 2:8.39-13build4 [149 kB] Get:115 http://ftpmaster.internal/ubuntu jammy/main arm64 libpcre32-3 arm64 2:8.39-13build4 [141 kB] Get:116 http://ftpmaster.internal/ubuntu jammy/main arm64 libpcrecpp0v5 arm64 2:8.39-13build4 [16.1 kB] Get:117 http://ftpmaster.internal/ubuntu jammy/main arm64 libpcre3-dev arm64 2:8.39-13build4 [527 kB] Get:118 http://ftpmaster.internal/ubuntu jammy/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2ubuntu7 [163 kB] Get:119 http://ftpmaster.internal/ubuntu jammy/main arm64 libpng-dev arm64 1.6.37-3build4 [194 kB] Get:120 http://ftpmaster.internal/ubuntu jammy/main arm64 libbz2-dev arm64 1.0.8-4ubuntu4 [34.5 kB] Get:121 http://ftpmaster.internal/ubuntu jammy/main arm64 liblzma-dev arm64 5.2.5-2build1 [159 kB] Get:122 http://ftpmaster.internal/ubuntu jammy/main arm64 icu-devtools arm64 67.1-7ubuntu1 [190 kB] Get:123 http://ftpmaster.internal/ubuntu jammy/main arm64 libicu-dev arm64 67.1-7ubuntu1 [11.0 MB] Get:124 http://ftpmaster.internal/ubuntu jammy/main arm64 pkg-config arm64 0.29.2-1ubuntu2 [47.3 kB] Get:125 http://ftpmaster.internal/ubuntu jammy/universe arm64 r-base-dev all 4.1.2-1ubuntu1 [4306 B] Get:126 http://ftpmaster.internal/ubuntu jammy/main arm64 libfile-which-perl all 1.23-1 [13.8 kB] Get:127 http://ftpmaster.internal/ubuntu jammy/universe arm64 libswitch-perl all 2.17-2.1 [18.3 kB] Get:128 http://ftpmaster.internal/ubuntu jammy/main arm64 libencode-locale-perl all 1.05-1.1 [11.8 kB] Get:129 http://ftpmaster.internal/ubuntu jammy/main arm64 libtimedate-perl all 2.3300-2 [34.0 kB] Get:130 http://ftpmaster.internal/ubuntu jammy/main arm64 libhttp-date-perl all 6.05-1 [9920 B] Get:131 http://ftpmaster.internal/ubuntu jammy/main arm64 libio-html-perl all 1.004-2 [15.4 kB] Get:132 http://ftpmaster.internal/ubuntu jammy/main arm64 liblwp-mediatypes-perl all 6.04-1 [19.5 kB] Get:133 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 liburi-perl all 5.10-1 [78.8 kB] Get:134 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libhttp-message-perl all 6.35-1 [77.0 kB] Get:135 http://ftpmaster.internal/ubuntu jammy/main arm64 libparams-util-perl arm64 1.102-1build2 [22.3 kB] Get:136 http://ftpmaster.internal/ubuntu jammy/main arm64 libsub-install-perl all 0.928-1.1 [9972 B] Get:137 http://ftpmaster.internal/ubuntu jammy/main arm64 libdata-optlist-perl all 0.112-1 [11.0 kB] Get:138 http://ftpmaster.internal/ubuntu jammy/main arm64 libb-hooks-op-check-perl arm64 0.22-1build4 [10.6 kB] Get:139 http://ftpmaster.internal/ubuntu jammy/main arm64 libdynaloader-functions-perl all 0.003-1.1 [12.1 kB] Get:140 http://ftpmaster.internal/ubuntu jammy/main arm64 libdevel-callchecker-perl arm64 0.008-1ubuntu3 [14.7 kB] Get:141 http://ftpmaster.internal/ubuntu jammy/main arm64 libparams-classify-perl arm64 0.015-1build4 [21.8 kB] Get:142 http://ftpmaster.internal/ubuntu jammy/main arm64 libmodule-runtime-perl all 0.016-1 [16.2 kB] Get:143 http://ftpmaster.internal/ubuntu jammy/main arm64 libtry-tiny-perl all 0.30-1 [20.5 kB] Get:144 http://ftpmaster.internal/ubuntu jammy/main arm64 libmodule-implementation-perl all 0.09-1.1 [11.6 kB] Get:145 http://ftpmaster.internal/ubuntu jammy/universe arm64 libscalar-list-utils-perl arm64 1:1.59-1 [55.6 kB] Get:146 http://ftpmaster.internal/ubuntu jammy/main arm64 libpackage-stash-perl all 0.39-1 [19.1 kB] Get:147 http://ftpmaster.internal/ubuntu jammy/universe arm64 libclass-load-perl all 0.25-1 [13.5 kB] Get:148 http://ftpmaster.internal/ubuntu jammy/universe arm64 libclass-load-xs-perl arm64 0.10-1build6 [13.3 kB] Get:149 http://ftpmaster.internal/ubuntu jammy/main arm64 libsub-exporter-progressive-perl all 0.001013-1 [6784 B] Get:150 http://ftpmaster.internal/ubuntu jammy/universe arm64 libdevel-globaldestruction-perl all 0.14-1.1 [6916 B] Get:151 http://ftpmaster.internal/ubuntu jammy/universe arm64 libalgorithm-c3-perl all 0.11-1 [11.0 kB] Get:152 http://ftpmaster.internal/ubuntu jammy/universe arm64 libclass-c3-perl all 0.35-1 [19.0 kB] Get:153 http://ftpmaster.internal/ubuntu jammy/universe arm64 libmro-compat-perl all 0.13-1 [11.2 kB] Get:154 http://ftpmaster.internal/ubuntu jammy/universe arm64 libdevel-overloadinfo-perl all 0.007-1 [7422 B] Get:155 http://ftpmaster.internal/ubuntu jammy/main arm64 libdevel-stacktrace-perl all 2.0400-1 [22.7 kB] Get:156 http://ftpmaster.internal/ubuntu jammy/main arm64 libsub-exporter-perl all 0.988-1 [50.6 kB] Get:157 http://ftpmaster.internal/ubuntu jammy/universe arm64 libeval-closure-perl all 0.14-1 [10.3 kB] Get:158 http://ftpmaster.internal/ubuntu jammy/universe arm64 libdist-checkconflicts-perl all 0.11-1.1 [9632 B] Get:159 http://ftpmaster.internal/ubuntu jammy/universe arm64 libmodule-runtime-conflicts-perl all 0.003-1.1 [6836 B] Get:160 http://ftpmaster.internal/ubuntu jammy/main arm64 libsub-name-perl arm64 0.26-1build2 [11.3 kB] Get:161 http://ftpmaster.internal/ubuntu jammy/universe arm64 libpackage-deprecationmanager-perl all 0.17-1.1 [15.5 kB] Get:162 http://ftpmaster.internal/ubuntu jammy/main arm64 libpackage-stash-xs-perl arm64 0.29-1build4 [19.0 kB] Get:163 http://ftpmaster.internal/ubuntu jammy/universe arm64 libmoose-perl arm64 2.2200-1 [749 kB] Get:164 http://ftpmaster.internal/ubuntu jammy/main arm64 libvariable-magic-perl arm64 0.62-1build4 [34.8 kB] Get:165 http://ftpmaster.internal/ubuntu jammy/main arm64 libb-hooks-endofscope-perl all 0.25-1 [17.8 kB] Get:166 http://ftpmaster.internal/ubuntu jammy/main arm64 libsub-identify-perl arm64 0.14-1build4 [10.6 kB] Get:167 http://ftpmaster.internal/ubuntu jammy/main arm64 libnamespace-clean-perl all 0.27-1 [13.6 kB] Get:168 http://ftpmaster.internal/ubuntu jammy/main arm64 libcurl3-gnutls arm64 7.74.0-1.3ubuntu2 [264 kB] Get:169 http://ftpmaster.internal/ubuntu jammy/universe arm64 libwww-curl-perl arm64 4.17-7build1 [49.6 kB] Get:170 http://ftpmaster.internal/ubuntu jammy/universe arm64 libwww-curl-simple-perl all 0.100191-2 [10.9 kB] Get:171 http://ftpmaster.internal/ubuntu jammy/universe arm64 dh-r all 20210218ubuntu1 [36.4 kB] Get:172 http://ftpmaster.internal/ubuntu jammy/universe arm64 r-cran-littler arm64 0.3.14-1 [93.4 kB] Get:173 http://ftpmaster.internal/ubuntu jammy/universe arm64 littler all 0.3.14-1 [2266 B] Get:174 http://ftpmaster.internal/ubuntu jammy-proposed/universe arm64 r-bioc-biocgenerics all 0.40.0-1 [583 kB] Get:175 http://ftpmaster.internal/ubuntu jammy-proposed/universe arm64 r-bioc-biobase arm64 2.54.0-1 [2222 kB] Get:176 http://ftpmaster.internal/ubuntu jammy-proposed/universe arm64 r-bioc-s4vectors arm64 0.32.3-1 [2059 kB] Get:177 http://ftpmaster.internal/ubuntu jammy-proposed/universe arm64 r-bioc-iranges arm64 2.28.0-1 [2219 kB] Get:178 http://ftpmaster.internal/ubuntu jammy/universe arm64 r-cran-dbi all 1.1.1-1 [617 kB] Get:179 http://ftpmaster.internal/ubuntu jammy/universe arm64 r-cran-bit arm64 4.0.4+dfsg-1 [418 kB] Get:180 http://ftpmaster.internal/ubuntu jammy/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] Get:181 http://ftpmaster.internal/ubuntu jammy/universe arm64 r-cran-rlang arm64 0.4.12-2 [1165 kB] Get:182 http://ftpmaster.internal/ubuntu jammy/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] Get:183 http://ftpmaster.internal/ubuntu jammy/universe arm64 r-cran-glue arm64 1.5.0-1 [143 kB] Get:184 http://ftpmaster.internal/ubuntu jammy/universe arm64 r-cran-vctrs arm64 0.3.8-1ubuntu1 [1076 kB] Get:185 http://ftpmaster.internal/ubuntu jammy/universe arm64 r-cran-blob all 1.2.2-1 [50.1 kB] Get:186 http://ftpmaster.internal/ubuntu jammy/universe arm64 r-cran-fastmap arm64 1.1.0-1 [63.7 kB] Get:187 http://ftpmaster.internal/ubuntu jammy/universe arm64 r-cran-cachem arm64 1.0.6-1 [70.4 kB] Get:188 http://ftpmaster.internal/ubuntu jammy/universe arm64 r-cran-memoise all 2.0.0-1 [52.8 kB] Get:189 http://ftpmaster.internal/ubuntu jammy/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] Get:190 http://ftpmaster.internal/ubuntu jammy/universe arm64 r-cran-pkgkitten all 0.2.2-2 [25.3 kB] Get:191 http://ftpmaster.internal/ubuntu jammy/universe arm64 r-cran-rcpp arm64 1.0.7-2 [1946 kB] Get:192 http://ftpmaster.internal/ubuntu jammy/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] Get:193 http://ftpmaster.internal/ubuntu jammy/universe arm64 r-cran-rsqlite arm64 2.2.8-1 [1089 kB] Get:194 http://ftpmaster.internal/ubuntu jammy/universe arm64 r-cran-curl arm64 4.3.2+dfsg-1 [155 kB] Get:195 http://ftpmaster.internal/ubuntu jammy/universe arm64 r-cran-jsonlite arm64 1.7.2+dfsg-1 [445 kB] Get:196 http://ftpmaster.internal/ubuntu jammy/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] Get:197 http://ftpmaster.internal/ubuntu jammy/universe arm64 r-cran-sys arm64 3.4-1 [42.5 kB] Get:198 http://ftpmaster.internal/ubuntu jammy/universe arm64 r-cran-askpass arm64 1.1-2 [22.2 kB] Get:199 http://ftpmaster.internal/ubuntu jammy-proposed/universe arm64 r-cran-openssl arm64 1.4.5+dfsg-1build1 [388 kB] Get:200 http://ftpmaster.internal/ubuntu jammy/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] Get:201 http://ftpmaster.internal/ubuntu jammy/universe arm64 r-cran-httr all 1.4.2-1 [478 kB] Get:202 http://ftpmaster.internal/ubuntu jammy/universe arm64 r-cran-png arm64 0.1-7-4 [38.9 kB] Get:203 http://ftpmaster.internal/ubuntu jammy-proposed/universe arm64 r-bioc-zlibbioc all 1.40.0+dfsg-1 [9270 B] Get:204 http://ftpmaster.internal/ubuntu jammy-proposed/universe arm64 r-bioc-xvector arm64 0.34.0-1 [613 kB] Get:205 http://ftpmaster.internal/ubuntu jammy/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] Get:206 http://ftpmaster.internal/ubuntu jammy/universe arm64 r-cran-rcurl arm64 1.98-1.5-1 [809 kB] Get:207 http://ftpmaster.internal/ubuntu jammy/universe arm64 r-bioc-genomeinfodbdata all 1.2.6-1 [11.0 MB] Get:208 http://ftpmaster.internal/ubuntu jammy-proposed/universe arm64 r-bioc-genomeinfodb all 1.30.0-1 [3951 kB] Get:209 http://ftpmaster.internal/ubuntu jammy/universe arm64 r-cran-crayon all 1.4.2-1 [159 kB] Get:210 http://ftpmaster.internal/ubuntu jammy-proposed/universe arm64 r-bioc-biostrings arm64 2.62.0-1 [14.1 MB] Get:211 http://ftpmaster.internal/ubuntu jammy-proposed/universe arm64 r-bioc-keggrest all 1.34.0+dfsg-1 [179 kB] Get:212 http://ftpmaster.internal/ubuntu jammy-proposed/universe arm64 r-bioc-annotationdbi all 1.56.2-1 [4928 kB] Get:213 http://ftpmaster.internal/ubuntu jammy/universe arm64 r-bioc-go.db all 3.13.0-1 [20.3 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 160 MB in 4s (41.0 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 13416 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.37.2-4ubuntu1_arm64.deb ... Unpacking bsdextrautils (2.37.2-4ubuntu1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../001-libuchardet0_0.0.7-1build1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1build1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-7_arm64.deb ... Unpacking groff-base (1.22.4-7) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../003-libpipeline1_1.5.4-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.4-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.4-2build1_arm64.deb ... Unpacking man-db (2.9.4-2build1) ... Selecting previously unselected package libmd0:arm64. Preparing to unpack .../005-libmd0_1.0.4-1_arm64.deb ... Unpacking libmd0:arm64 (1.0.4-1) ... 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Selecting previously unselected package r-bioc-keggrest. Preparing to unpack .../209-r-bioc-keggrest_1.34.0+dfsg-1_all.deb ... Unpacking r-bioc-keggrest (1.34.0+dfsg-1) ... Selecting previously unselected package r-bioc-annotationdbi. Preparing to unpack .../210-r-bioc-annotationdbi_1.56.2-1_all.deb ... Unpacking r-bioc-annotationdbi (1.56.2-1) ... Selecting previously unselected package r-bioc-go.db. Preparing to unpack .../211-r-bioc-go.db_3.13.0-1_all.deb ... Unpacking r-bioc-go.db (3.13.0-1) ... Selecting previously unselected package sbuild-build-depends-r-bioc-gosemsim-dummy. Preparing to unpack .../212-sbuild-build-depends-r-bioc-gosemsim-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-r-bioc-gosemsim-dummy (0.invalid.0) ... Setting up libexpat1:arm64 (2.4.1-3) ... Setting up libpcrecpp0v5:arm64 (2:8.39-13build4) ... Setting up libpipeline1:arm64 (1.5.4-1) ... Setting up libgraphite2-3:arm64 (1.3.14-1build1) ... Setting up libpixman-1-0:arm64 (0.40.0-1build3) ... Setting up libfile-which-perl (1.23-1) ... Setting up libxau6:arm64 (1:1.0.9-1build4) ... Setting up libncurses-dev:arm64 (6.3-1) ... Setting up libpsl5:arm64 (0.21.0-1.2build1) ... Setting up bsdextrautils (2.37.2-4ubuntu1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libpcre16-3:arm64 (2:8.39-13build4) ... Setting up libicu67:arm64 (67.1-7ubuntu1) ... Setting up libdynaloader-functions-perl (0.003-1.1) ... Setting up libdatrie1:arm64 (0.2.13-1ubuntu3) ... Setting up libmagic-mgc (1:5.41-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libsub-identify-perl (0.14-1build4) ... Setting up libglib2.0-0:arm64 (2.70.1-1) ... No schema files found: doing nothing. Setting up libscalar-list-utils-perl (1:1.59-1) ... Setting up unzip (6.0-26ubuntu2) ... Setting up libdebhelper-perl (13.5.2ubuntu1) ... Setting up libbrotli1:arm64 (1.0.9-2build4) ... Setting up liblwp-mediatypes-perl (6.04-1) ... Setting up x11-common (1:7.7+23ubuntu1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libtry-tiny-perl (0.30-1) ... Setting up libnghttp2-14:arm64 (1.43.0-1build1) ... Setting up libmagic1:arm64 (1:5.41-2) ... Setting up libdeflate0:arm64 (1.8-1ubuntu1) ... Setting up gettext-base (0.21-4ubuntu3) ... Setting up libencode-locale-perl (1.05-1.1) ... Setting up file (1:5.41-2) ... Setting up libreadline-dev:arm64 (8.1-2build1) ... Setting up libjbig0:arm64 (2.1-3.1build2) ... Setting up libpcre2-16-0:arm64 (10.39-3) ... Setting up libsub-install-perl (0.928-1.1) ... Setting up libsasl2-modules-db:arm64 (2.1.27+dfsg2-2build1) ... Setting up zip (3.0-12build1) ... Setting up libpackage-stash-xs-perl (0.29-1build4) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libpcre2-32-0:arm64 (10.39-3) ... Setting up libblas3:arm64 (3.9.0-3ubuntu3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libalgorithm-c3-perl (0.11-1) ... Setting up libswitch-perl (2.17-2.1) ... Setting up libfreetype6:arm64 (2.11.0+dfsg-1) ... Setting up libx11-data (2:1.7.2-2) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2build3) ... Setting up libsigsegv2:arm64 (2.13-1ubuntu2) ... Setting up libfribidi0:arm64 (1.0.8-2ubuntu2) ... Setting up libpcre32-3:arm64 (2:8.39-13build4) ... Setting up libvariable-magic-perl (0.62-1build4) ... Setting up libio-html-perl (1.004-2) ... Setting up libtcl8.6:arm64 (8.6.12+dfsg-1) ... Setting up autopoint (0.21-4ubuntu3) ... Setting up libwebp6:arm64 (0.6.1-2.1build1) ... Setting up libb-hooks-op-check-perl (0.22-1build4) ... Setting up icu-devtools (67.1-7ubuntu1) ... Setting up pkg-config (0.29.2-1ubuntu2) ... Setting up fonts-dejavu-core (2.37-2build1) ... Setting up ucf (3.0043) ... Setting up libjpeg-turbo8:arm64 (2.1.1-0ubuntu1) ... Setting up libparams-util-perl (1.102-1build2) ... Setting up libsasl2-2:arm64 (2.1.27+dfsg2-2build1) ... Setting up libssh-4:arm64 (0.9.6-1) ... Setting up libgfortran5:arm64 (11.2.0-12ubuntu1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up liblzma-dev:arm64 (5.2.5-2build1) ... Setting up libsub-name-perl (0.26-1build2) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-2ubuntu7) ... Setting up libpcre2-posix3:arm64 (10.39-3) ... Setting up libmd0:arm64 (1.0.4-1) ... Setting up libuchardet0:arm64 (0.0.7-1build1) ... Setting up libncurses5-dev:arm64 (6.3-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libharfbuzz0b:arm64 (2.7.4-1ubuntu2) ... Setting up libthai-data (0.1.28-4.1) ... Setting up libdevel-globaldestruction-perl (0.14-1.1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libbsd0:arm64 (0.11.3-1ubuntu3) ... Setting up libelf1:arm64 (0.186-1) ... Setting up libicu-dev:arm64 (67.1-7ubuntu1) ... Setting up libxml2:arm64 (2.9.12+dfsg-5) ... Setting up xdg-utils (1.1.3-4.1ubuntu1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up liburi-perl (5.10-1) ... Setting up libblas-dev:arm64 (3.9.0-3ubuntu3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode Setting up dctrl-tools (2.24-3build1) ... Setting up libbz2-dev:arm64 (1.0.8-4ubuntu4) ... Setting up libjpeg8:arm64 (8c-2ubuntu8) ... Setting up libfile-stripnondeterminism-perl (1.12.1-1) ... Setting up libpaper1:arm64 (1.1.28build1) ... Creating config file /etc/papersize with new version Setting up libice6:arm64 (2:1.0.10-1build1) ... Setting up libhttp-date-perl (6.05-1) ... Setting up libdw1:arm64 (0.186-1) ... Setting up libjpeg-turbo8-dev:arm64 (2.1.1-0ubuntu1) ... Setting up libxdmcp6:arm64 (1:1.1.3-0ubuntu4) ... Setting up liblapack3:arm64 (3.9.0-3ubuntu3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libxcb1:arm64 (1.14-3ubuntu2) ... Setting up gettext (0.21-4ubuntu3) ... Setting up libpcre2-dev:arm64 (10.39-3) ... Setting up libtool (2.4.6-15build1) ... Setting up libxcb-render0:arm64 (1.14-3ubuntu2) ... Setting up libpcre3-dev:arm64 (2:8.39-13build4) ... Setting up libgfortran-11-dev:arm64 (11.2.0-12ubuntu1) ... Setting up fontconfig-config (2.13.1-4.2ubuntu4) ... Setting up libpng-dev:arm64 (1.6.37-3build4) ... Setting up m4 (1.4.18-5ubuntu1) ... Setting up libxcb-shm0:arm64 (1.14-3ubuntu2) ... Setting up libpaper-utils (1.1.28build1) ... Setting up libclass-c3-perl (0.35-1) ... Setting up libdevel-callchecker-perl (0.008-1ubuntu3) ... Setting up libldap-2.5-0:arm64 (2.5.6+dfsg-1~exp1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libthai0:arm64 (0.1.28-4.1) ... Setting up liblapack-dev:arm64 (3.9.0-3ubuntu3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode Setting up libdata-optlist-perl (0.112-1) ... Setting up gfortran-11 (11.2.0-12ubuntu1) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.12.1-1) ... Setting up dwz (0.14-1build1) ... Setting up groff-base (1.22.4-7) ... Setting up debugedit (1:5.0-3) ... Setting up libcurl4:arm64 (7.74.0-1.3ubuntu2) ... Setting up libx11-6:arm64 (2:1.7.2-2) ... Setting up libtiff5:arm64 (4.3.0-2) ... Setting up libfontconfig1:arm64 (2.13.1-4.2ubuntu4) ... Setting up libmro-compat-perl (0.13-1) ... Setting up libjpeg8-dev:arm64 (8c-2ubuntu8) ... Setting up libsm6:arm64 (2:1.2.3-1build1) ... Setting up libxmuu1:arm64 (2:1.1.3-0ubuntu2) ... Setting up libsub-exporter-perl (0.988-1) ... Setting up libhttp-message-perl (6.35-1) ... Setting up libeval-closure-perl (0.14-1) ... Setting up automake (1:1.16.5-1.1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up fontconfig (2.13.1-4.2ubuntu4) ... Regenerating fonts cache... done. Setting up libxrender1:arm64 (1:0.9.10-1build3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libparams-classify-perl (0.015-1build4) ... Setting up libpango-1.0-0:arm64 (1.48.10+ds1-1) ... Setting up libjpeg-dev:arm64 (8c-2ubuntu8) ... Setting up libxext6:arm64 (2:1.3.4-1) ... Setting up libcurl3-gnutls:arm64 (7.74.0-1.3ubuntu2) ... Setting up man-db (2.9.4-2build1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up gfortran (4:11.2.0-1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:arm64 (1.16.0-5ubuntu2) ... Setting up dh-autoreconf (20) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libdist-checkconflicts-perl (0.11-1.1) ... Setting up libxt6:arm64 (1:1.2.0-1build1) ... Setting up xauth (1:1.1-1build1) ... Setting up libxss1:arm64 (1:1.2.3-1build1) ... Setting up libpangoft2-1.0-0:arm64 (1.48.10+ds1-1) ... Setting up libpangocairo-1.0-0:arm64 (1.48.10+ds1-1) ... Setting up libxft2:arm64 (2.3.3-0ubuntu4) ... Setting up libmodule-implementation-perl (0.09-1.1) ... Setting up libpackage-stash-perl (0.39-1) ... Setting up libtk8.6:arm64 (8.6.12-1) ... Setting up libwww-curl-perl (4.17-7build1) ... Setting up debhelper (13.5.2ubuntu1) ... Setting up libmodule-runtime-conflicts-perl (0.003-1.1) ... Setting up libclass-load-perl (0.25-1) ... Setting up r-base-core (4.1.2-1ubuntu1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.4.2-1) ... Setting up libpackage-deprecationmanager-perl (0.17-1.1) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-1build6) ... Setting up r-cran-r6 (2.5.1-1) ... Setting up r-cran-pkgkitten (0.2.2-2) ... Setting up libb-hooks-endofscope-perl (0.25-1) ... Setting up r-bioc-genomeinfodbdata (1.2.6-1) ... Setting up r-cran-littler (0.3.14-1) ... Setting up r-cran-rcpp (1.0.7-2) ... Setting up r-cran-curl (4.3.2+dfsg-1) ... Setting up r-bioc-biocgenerics (0.40.0-1) ... Setting up r-cran-rlang (0.4.12-2) ... Setting up r-base-dev (4.1.2-1ubuntu1) ... Setting up littler (0.3.14-1) ... Setting up r-cran-sys (3.4-1) ... Setting up r-cran-plogr (0.2.0-3build1) ... Setting up r-cran-mime (0.12-1) ... Setting up libmoose-perl:arm64 (2.2200-1) ... Setting up r-cran-dbi (1.1.1-1) ... Setting up r-cran-glue (1.5.0-1) ... Setting up r-cran-bit (4.0.4+dfsg-1) ... Setting up r-cran-bitops (1.0-7-1) ... Setting up r-cran-bit64 (4.0.5-1) ... Setting up r-bioc-zlibbioc (1.40.0+dfsg-1) ... Setting up r-cran-askpass (1.1-2) ... Setting up r-cran-fastmap (1.1.0-1) ... Setting up r-cran-png (0.1-7-4) ... Setting up r-bioc-biobase (2.54.0-1) ... Setting up r-cran-jsonlite (1.7.2+dfsg-1) ... Setting up r-cran-pkgconfig (2.0.3-2build1) ... Setting up r-bioc-s4vectors (0.32.3-1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up r-cran-cachem (1.0.6-1) ... Setting up r-bioc-iranges (2.28.0-1) ... Setting up r-cran-rcurl (1.98-1.5-1) ... Setting up r-cran-ellipsis (0.3.2-2) ... Setting up r-cran-openssl (1.4.5+dfsg-1build1) ... Setting up libwww-curl-simple-perl (0.100191-2) ... Setting up r-bioc-genomeinfodb (1.30.0-1) ... Setting up r-cran-httr (1.4.2-1) ... Setting up r-cran-memoise (2.0.0-1) ... Setting up r-bioc-xvector (0.34.0-1) ... Setting up dh-r (20210218ubuntu1) ... Setting up r-cran-vctrs (0.3.8-1ubuntu1) ... Setting up r-bioc-biostrings (2.62.0-1) ... Setting up r-cran-blob (1.2.2-1) ... Setting up r-cran-rsqlite (2.2.8-1) ... Setting up r-bioc-keggrest (1.34.0+dfsg-1) ... Setting up r-bioc-annotationdbi (1.56.2-1) ... Setting up r-bioc-go.db (3.13.0-1) ... Setting up sbuild-build-depends-r-bioc-gosemsim-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.34-0ubuntu3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-162-generic arm64 (aarch64) Toolchain package versions: binutils_2.37-10ubuntu1 dpkg-dev_1.20.9ubuntu2 g++-11_11.2.0-12ubuntu1 gcc-11_11.2.0-12ubuntu1 libc6-dev_2.34-0ubuntu3 libstdc++-11-dev_11.2.0-12ubuntu1 libstdc++6_11.2.0-12ubuntu1 linux-libc-dev_5.15.0-12.12 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1ubuntu1 apt_2.3.13 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4ubuntu3 autotools-dev_20180224.1+nmu1 base-files_12ubuntu2 base-passwd_3.5.52 bash_5.1-3ubuntu2 binutils_2.37-10ubuntu1 binutils-aarch64-linux-gnu_2.37-10ubuntu1 binutils-common_2.37-10ubuntu1 bsdextrautils_2.37.2-4ubuntu1 bsdutils_1:2.37.2-4ubuntu1 build-essential_12.9ubuntu2 bzip2_1.0.8-4ubuntu4 ca-certificates_20211016 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perl-modules-5.32_5.32.1-3ubuntu3 pinentry-curses_1.1.1-1build1 pkg-config_0.29.2-1ubuntu2 pkgbinarymangler_149 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3 procps_2:3.3.17-5ubuntu3 r-base-core_4.1.2-1ubuntu1 r-base-dev_4.1.2-1ubuntu1 r-bioc-annotationdbi_1.56.2-1 r-bioc-biobase_2.54.0-1 r-bioc-biocgenerics_0.40.0-1 r-bioc-biostrings_2.62.0-1 r-bioc-genomeinfodb_1.30.0-1 r-bioc-genomeinfodbdata_1.2.6-1 r-bioc-go.db_3.13.0-1 r-bioc-iranges_2.28.0-1 r-bioc-keggrest_1.34.0+dfsg-1 r-bioc-s4vectors_0.32.3-1 r-bioc-xvector_0.34.0-1 r-bioc-zlibbioc_1.40.0+dfsg-1 r-cran-askpass_1.1-2 r-cran-bit_4.0.4+dfsg-1 r-cran-bit64_4.0.5-1 r-cran-bitops_1.0-7-1 r-cran-blob_1.2.2-1 r-cran-cachem_1.0.6-1 r-cran-crayon_1.4.2-1 r-cran-curl_4.3.2+dfsg-1 r-cran-dbi_1.1.1-1 r-cran-ellipsis_0.3.2-2 r-cran-fastmap_1.1.0-1 r-cran-glue_1.5.0-1 r-cran-httr_1.4.2-1 r-cran-jsonlite_1.7.2+dfsg-1 r-cran-littler_0.3.14-1 r-cran-memoise_2.0.0-1 r-cran-mime_0.12-1 r-cran-openssl_1.4.5+dfsg-1build1 r-cran-pkgconfig_2.0.3-2build1 r-cran-pkgkitten_0.2.2-2 r-cran-plogr_0.2.0-3build1 r-cran-png_0.1-7-4 r-cran-r6_2.5.1-1 r-cran-rcpp_1.0.7-2 r-cran-rcurl_1.98-1.5-1 r-cran-rlang_0.4.12-2 r-cran-rsqlite_2.2.8-1 r-cran-sys_3.4-1 r-cran-vctrs_0.3.8-1ubuntu1 readline-common_8.1-2build1 rpcsvc-proto_1.4.2-0ubuntu5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-gosemsim-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 systemd_248.3-1ubuntu8 systemd-sysv_248.3-1ubuntu8 systemd-timesyncd_248.3-1ubuntu8 sysvinit-utils_2.96-7ubuntu2 tar_1.34+dfsg-1build2 tzdata_2021e-1ubuntu1 ubuntu-keyring_2021.03.26 ucf_3.0043 unzip_6.0-26ubuntu2 usrmerge_25ubuntu2 util-linux_2.37.2-4ubuntu1 x11-common_1:7.7+23ubuntu1 xauth_1:1.1-1build1 xdg-utils_1.1.3-4.1ubuntu1 xz-utils_5.2.5-2build1 zip_3.0-12build1 zlib1g_1:1.2.11.dfsg-2ubuntu7 zlib1g-dev_1:1.2.11.dfsg-2ubuntu7 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu Nov 25 13:52:08 2021 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-bioc-gosemsim_2.20.0-1.dsc dpkg-source: info: extracting r-bioc-gosemsim in /<> dpkg-source: info: unpacking r-bioc-gosemsim_2.20.0.orig.tar.gz dpkg-source: info: unpacking r-bioc-gosemsim_2.20.0-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-22451845 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-22451845 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-22451845 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package r-bioc-gosemsim dpkg-buildpackage: info: source version 2.20.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary-arch dh binary-arch --buildsystem R dh_update_autotools_config -a -O--buildsystem=R dh_autoreconf -a -O--buildsystem=R dh_auto_configure -a -O--buildsystem=R dh_auto_build -a -O--buildsystem=R dh_auto_test -a -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=R dh_prep -a -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-gosemsim/ -a -O--buildsystem=R I: R Package: GOSemSim Version: 2.20.0 I: Building using R version 4.1.2-1ubuntu1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Thu, 25 Nov 2021 14:43:04 +0100 mkdir -p /<>/debian/r-bioc-gosemsim/usr/lib/R/site-library R CMD INSTALL -l /<>/debian/r-bioc-gosemsim/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 25 Nov 2021 14:43:04 +0100'" * installing *source* package ‘GOSemSim’ ... ** using staged installation ** libs make[1]: Entering directory '/<>/src' g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-G2uuMu/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ICmethod.cpp -o ICmethod.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-G2uuMu/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++14 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -o GOSemSim.so ICmethod.o RcppExports.o -L/usr/lib/R/lib -lR make[1]: Leaving directory '/<>/src' make[1]: Entering directory '/<>/src' make[1]: Leaving directory '/<>/src' installing to /<>/debian/r-bioc-gosemsim/usr/lib/R/site-library/00LOCK-r-bioc-gosemsim-2.20.0/00new/GOSemSim/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GOSemSim) Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 299. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 303. W: Ignoring specified R dependency: R (>= 3.5.0) I: Using r-bioc-annotationhub for Suggests:AnnotationHub I: Using r-cran-biocmanager for Suggests:BiocManager W: Cannot find a debian package for Suggests:clusterProfiler W: Cannot find a debian package for Suggests:DOSE I: Using r-cran-knitr for Suggests:knitr I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-bioc-org.hs.eg.db for Suggests:org.Hs.eg.db W: Cannot find a debian package for Suggests:prettydoc I: Using r-cran-testthat for Suggests:testthat I: Using r-cran-rocr for Suggests:ROCR I: Using r-bioc-annotationdbi for Imports:AnnotationDbi I: Using r-bioc-go.db for Imports:GO.db I: Using r-cran-rcpp for LinkingTo:Rcpp I: BioConductor API version: r-api-bioc-3.14 I: Use r-bioc-gosemsim as Debian binary package for variables substitution dh_installdocs -a -O--buildsystem=R dh_installchangelogs -a -O--buildsystem=R dh_installsystemduser -a -O--buildsystem=R dh_perl -a -O--buildsystem=R dh_link -a -O--buildsystem=R dh_strip_nondeterminism -a -O--buildsystem=R dh_compress -a -O--buildsystem=R dh_fixperms -a -O--buildsystem=R dh_missing -a -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R d7ee171aa31b09081712ab5a34622627f7e719dc dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -a -O--buildsystem=R dh_gencontrol -a -O--buildsystem=R dh_md5sums -a -O--buildsystem=R dh_builddeb -a -O--buildsystem=R INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing r-bioc-gosemsim (in debian/r-bioc-gosemsim); do_strip: , oemstrip: pkgstriptranslations: processing r-bioc-gosemsim-dbgsym (in debian/.debhelper/r-bioc-gosemsim/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-bioc-gosemsim/DEBIAN/control, package r-bioc-gosemsim, directory debian/r-bioc-gosemsim pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-bioc-gosemsim ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-bioc-gosemsim' in '../r-bioc-gosemsim_2.20.0-1_arm64.deb'. pkgstripfiles: processing control file: debian/.debhelper/r-bioc-gosemsim/dbgsym-root/DEBIAN/control, package r-bioc-gosemsim-dbgsym, directory debian/.debhelper/r-bioc-gosemsim/dbgsym-root dpkg-deb: building package 'r-bioc-gosemsim-dbgsym' in 'debian/.debhelper/scratch-space/build-r-bioc-gosemsim/r-bioc-gosemsim-dbgsym_2.20.0-1_arm64.deb'. Renaming r-bioc-gosemsim-dbgsym_2.20.0-1_arm64.deb to r-bioc-gosemsim-dbgsym_2.20.0-1_arm64.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../r-bioc-gosemsim_2.20.0-1_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-11-26T06:34:58Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-bioc-gosemsim_2.20.0-1_arm64.changes: --------------------------------------- Format: 1.8 Date: Thu, 25 Nov 2021 14:43:04 +0100 Source: r-bioc-gosemsim Binary: r-bioc-gosemsim Built-For-Profiles: noudeb Architecture: arm64 Version: 2.20.0-1 Distribution: jammy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: r-bioc-gosemsim - GO-terms semantic similarity measures Changes: r-bioc-gosemsim (2.20.0-1) unstable; urgency=medium . * Disable reprotest * New upstream version Checksums-Sha1: 7c0d0814c6a9c924c8799efbcfd378e2d8a505cc 478170 r-bioc-gosemsim-dbgsym_2.20.0-1_arm64.ddeb 60bd50506e51ea926024bc38d1c09fc89d4551cc 12140 r-bioc-gosemsim_2.20.0-1_arm64.buildinfo 240da7a4b3645ed37d65a79cb375f88308adffc7 880398 r-bioc-gosemsim_2.20.0-1_arm64.deb Checksums-Sha256: c4ac51eceb0a088a2452bfaa560b84bfa31116c9eb2aca04a2abc6e400e434f5 478170 r-bioc-gosemsim-dbgsym_2.20.0-1_arm64.ddeb 34ebe3d30a992d425e3c7d57396a75621c2774ac2bf603c49d8b06ff608ce06d 12140 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r-bioc-gosemsim-dbgsym_2.20.0-1_arm64.ddeb 240da7a4b3645ed37d65a79cb375f88308adffc7 880398 r-bioc-gosemsim_2.20.0-1_arm64.deb Checksums-Sha256: c4ac51eceb0a088a2452bfaa560b84bfa31116c9eb2aca04a2abc6e400e434f5 478170 r-bioc-gosemsim-dbgsym_2.20.0-1_arm64.ddeb 6780ca2c26823c8153fe24d94d88c7a8feca926f48142d02584a90b2afd7eb21 880398 r-bioc-gosemsim_2.20.0-1_arm64.deb Build-Origin: Ubuntu Build-Architecture: arm64 Build-Date: Fri, 26 Nov 2021 06:34:57 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.1), autopoint (= 0.21-4ubuntu3), autotools-dev (= 20180224.1+nmu1), base-files (= 12ubuntu2), base-passwd (= 3.5.52), bash (= 5.1-3ubuntu2), binutils (= 2.37-10ubuntu1), binutils-aarch64-linux-gnu (= 2.37-10ubuntu1), binutils-common (= 2.37-10ubuntu1), bsdextrautils (= 2.37.2-4ubuntu1), bsdutils (= 1:2.37.2-4ubuntu1), build-essential (= 12.9ubuntu2), bzip2 (= 1.0.8-4ubuntu4), ca-certificates (= 20211016), coreutils (= 8.32-4ubuntu3), cpp (= 4:11.2.0-1ubuntu1), cpp-11 (= 11.2.0-12ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-3), dctrl-tools (= 2.24-3build1), debconf (= 1.5.79), debhelper (= 13.5.2ubuntu1), debianutils (= 5.5-1), debugedit (= 1:5.0-3), dh-autoreconf (= 20), dh-r (= 20210218ubuntu1), dh-strip-nondeterminism (= 1.12.1-1), diffutils (= 1:3.8-0ubuntu1), dpkg (= 1.20.9ubuntu2), dpkg-dev (= 1.20.9ubuntu2), dwz (= 0.14-1build1), file (= 1:5.41-2), findutils (= 4.8.0-1ubuntu2), fontconfig (= 2.13.1-4.2ubuntu4), fontconfig-config (= 2.13.1-4.2ubuntu4), fonts-dejavu-core (= 2.37-2build1), g++ (= 4:11.2.0-1ubuntu1), g++-11 (= 11.2.0-12ubuntu1), gcc (= 4:11.2.0-1ubuntu1), gcc-11 (= 11.2.0-12ubuntu1), gcc-11-base (= 11.2.0-12ubuntu1), gettext (= 0.21-4ubuntu3), gettext-base (= 0.21-4ubuntu3), gfortran (= 4:11.2.0-1ubuntu1), gfortran-11 (= 11.2.0-12ubuntu1), grep (= 3.7-1), groff-base (= 1.22.4-7), gzip (= 1.10-4ubuntu2), hostname (= 3.23ubuntu1), icu-devtools (= 67.1-7ubuntu1), init-system-helpers (= 1.60build1), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-10ubuntu2), libalgorithm-c3-perl (= 0.11-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.2.0-12ubuntu1), libatomic1 (= 11.2.0-12ubuntu1), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0-2ubuntu3), libaudit1 (= 1:3.0-2ubuntu3), libb-hooks-endofscope-perl (= 0.25-1), libb-hooks-op-check-perl (= 0.22-1build4), libbinutils (= 2.37-10ubuntu1), libblas-dev (= 3.9.0-3ubuntu3), libblas3 (= 3.9.0-3ubuntu3), libblkid1 (= 2.37.2-4ubuntu1), libbrotli1 (= 1.0.9-2build4), libbsd0 (= 0.11.3-1ubuntu3), libbz2-1.0 (= 1.0.8-4ubuntu4), libbz2-dev (= 1.0.8-4ubuntu4), libc-bin (= 2.34-0ubuntu3), libc-dev-bin (= 2.34-0ubuntu3), libc6 (= 2.34-0ubuntu3), libc6-dev (= 2.34-0ubuntu3), libcairo2 (= 1.16.0-5ubuntu2), libcap-ng0 (= 0.7.9-2.2build2), libcap2 (= 1:2.44-1build2), libcc1-0 (= 11.2.0-12ubuntu1), libclass-c3-perl (= 0.35-1), libclass-load-perl (= 0.25-1), libclass-load-xs-perl (= 0.10-1build6), libcom-err2 (= 1.46.4-1ubuntu1), libcrypt-dev (= 1:4.4.26-1), libcrypt1 (= 1:4.4.26-1), libctf-nobfd0 (= 2.37-10ubuntu1), libctf0 (= 2.37-10ubuntu1), libcurl3-gnutls (= 7.74.0-1.3ubuntu2), libcurl4 (= 7.74.0-1.3ubuntu2), libdata-optlist-perl (= 0.112-1), libdatrie1 (= 0.2.13-1ubuntu3), libdb5.3 (= 5.3.28+dfsg1-0.8ubuntu2), libdebconfclient0 (= 0.256ubuntu4), libdebhelper-perl (= 13.5.2ubuntu1), libdeflate0 (= 1.8-1ubuntu1), libdevel-callchecker-perl (= 0.008-1ubuntu3), libdevel-globaldestruction-perl (= 0.14-1.1), libdevel-overloadinfo-perl (= 0.007-1), libdevel-stacktrace-perl (= 2.0400-1), libdist-checkconflicts-perl (= 0.11-1.1), libdpkg-perl (= 1.20.9ubuntu2), libdw1 (= 0.186-1), libdynaloader-functions-perl (= 0.003-1.1), libelf1 (= 0.186-1), libencode-locale-perl (= 1.05-1.1), libeval-closure-perl (= 0.14-1), libexpat1 (= 2.4.1-3), libffi8 (= 3.4.2-1ubuntu5), libfile-stripnondeterminism-perl (= 1.12.1-1), libfile-which-perl (= 1.23-1), libfontconfig1 (= 2.13.1-4.2ubuntu4), libfreetype6 (= 2.11.0+dfsg-1), libfribidi0 (= 1.0.8-2ubuntu2), libgcc-11-dev (= 11.2.0-12ubuntu1), libgcc-s1 (= 11.2.0-12ubuntu1), libgcrypt20 (= 1.9.4-3ubuntu2), libgdbm-compat4 (= 1.22-1), libgdbm6 (= 1.22-1), libgfortran-11-dev (= 11.2.0-12ubuntu1), libgfortran5 (= 11.2.0-12ubuntu1), libglib2.0-0 (= 2.70.1-1), libgmp10 (= 2:6.2.1+dfsg-1ubuntu3), libgnutls30 (= 3.7.2-2ubuntu1), libgomp1 (= 11.2.0-12ubuntu1), libgpg-error0 (= 1.42-3), libgraphite2-3 (= 1.3.14-1build1), libgssapi-krb5-2 (= 1.18.3-7), libharfbuzz0b (= 2.7.4-1ubuntu2), libhogweed6 (= 3.7.3-1build1), libhttp-date-perl (= 6.05-1), libhttp-message-perl (= 6.35-1), libhwasan0 (= 11.2.0-12ubuntu1), libice6 (= 2:1.0.10-1build1), libicu-dev (= 67.1-7ubuntu1), libicu67 (= 67.1-7ubuntu1), libidn2-0 (= 2.3.2-2), libio-html-perl (= 1.004-2), libisl23 (= 0.24-2), libitm1 (= 11.2.0-12ubuntu1), libjbig0 (= 2.1-3.1build2), libjpeg-dev (= 8c-2ubuntu8), libjpeg-turbo8 (= 2.1.1-0ubuntu1), libjpeg-turbo8-dev (= 2.1.1-0ubuntu1), libjpeg8 (= 8c-2ubuntu8), libjpeg8-dev (= 8c-2ubuntu8), libk5crypto3 (= 1.18.3-7), libkeyutils1 (= 1.6.1-2ubuntu2), libkrb5-3 (= 1.18.3-7), libkrb5support0 (= 1.18.3-7), liblapack-dev (= 3.9.0-3ubuntu3), liblapack3 (= 3.9.0-3ubuntu3), libldap-2.5-0 (= 2.5.6+dfsg-1~exp1ubuntu1), liblsan0 (= 11.2.0-12ubuntu1), liblwp-mediatypes-perl (= 6.04-1), liblz4-1 (= 1.9.3-2build1), liblzma-dev (= 5.2.5-2build1), liblzma5 (= 5.2.5-2build1), libmagic-mgc (= 1:5.41-2), libmagic1 (= 1:5.41-2), libmd0 (= 1.0.4-1), libmodule-implementation-perl (= 0.09-1.1), libmodule-runtime-conflicts-perl (= 0.003-1.1), libmodule-runtime-perl (= 0.016-1), libmoose-perl (= 2.2200-1), libmount1 (= 2.37.2-4ubuntu1), libmpc3 (= 1.2.1-1), libmpfr6 (= 4.1.0-3build2), libmro-compat-perl (= 0.13-1), libnamespace-clean-perl (= 0.27-1), libncurses-dev (= 6.3-1), libncurses5-dev (= 6.3-1), libncurses6 (= 6.3-1), libncursesw6 (= 6.3-1), libnettle8 (= 3.7.3-1build1), libnghttp2-14 (= 1.43.0-1build1), libnsl-dev (= 1.3.0-2build1), libnsl2 (= 1.3.0-2build1), libp11-kit0 (= 0.24.0-5), libpackage-deprecationmanager-perl (= 0.17-1.1), libpackage-stash-perl (= 0.39-1), libpackage-stash-xs-perl (= 0.29-1build4), libpam-modules (= 1.4.0-10ubuntu1), libpam-modules-bin (= 1.4.0-10ubuntu1), libpam-runtime (= 1.4.0-10ubuntu1), libpam0g (= 1.4.0-10ubuntu1), libpango-1.0-0 (= 1.48.10+ds1-1), libpangocairo-1.0-0 (= 1.48.10+ds1-1), libpangoft2-1.0-0 (= 1.48.10+ds1-1), libpaper-utils (= 1.1.28build1), libpaper1 (= 1.1.28build1), libparams-classify-perl (= 0.015-1build4), libparams-util-perl (= 1.102-1build2), libpcre16-3 (= 2:8.39-13build4), libpcre2-16-0 (= 10.39-3), libpcre2-32-0 (= 10.39-3), libpcre2-8-0 (= 10.39-3), libpcre2-dev (= 10.39-3), libpcre2-posix3 (= 10.39-3), libpcre3 (= 2:8.39-13build4), libpcre3-dev (= 2:8.39-13build4), libpcre32-3 (= 2:8.39-13build4), libpcrecpp0v5 (= 2:8.39-13build4), libperl5.32 (= 5.32.1-3ubuntu3), libpipeline1 (= 1.5.4-1), libpixman-1-0 (= 0.40.0-1build3), libpng-dev (= 1.6.37-3build4), libpng16-16 (= 1.6.37-3build4), libpsl5 (= 0.21.0-1.2build1), libreadline-dev (= 8.1-2build1), libreadline8 (= 8.1-2build1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build3), libsasl2-2 (= 2.1.27+dfsg2-2build1), libsasl2-modules-db (= 2.1.27+dfsg2-2build1), libscalar-list-utils-perl (= 1:1.59-1), libseccomp2 (= 2.5.2-2ubuntu2), libselinux1 (= 3.3-1), libsigsegv2 (= 2.13-1ubuntu2), libsm6 (= 2:1.2.3-1build1), libsmartcols1 (= 2.37.2-4ubuntu1), libssh-4 (= 0.9.6-1), libssl1.1 (= 1.1.1l-1ubuntu1), libssl3 (= 3.0.0-1ubuntu1), libstdc++-11-dev (= 11.2.0-12ubuntu1), libstdc++6 (= 11.2.0-12ubuntu1), libsub-exporter-perl (= 0.988-1), libsub-exporter-progressive-perl (= 0.001013-1), libsub-identify-perl (= 0.14-1build4), libsub-install-perl (= 0.928-1.1), libsub-name-perl (= 0.26-1build2), libsub-override-perl (= 0.09-2), libswitch-perl (= 2.17-2.1), libsystemd0 (= 248.3-1ubuntu8), libtasn1-6 (= 4.18.0-4), libtcl8.6 (= 8.6.12+dfsg-1), libthai-data (= 0.1.28-4.1), libthai0 (= 0.1.28-4.1), libtiff5 (= 4.3.0-2), libtimedate-perl (= 2.3300-2), libtinfo6 (= 6.3-1), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtk8.6 (= 8.6.12-1), libtool (= 2.4.6-15build1), libtry-tiny-perl (= 0.30-1), libtsan0 (= 11.2.0-12ubuntu1), libubsan1 (= 11.2.0-12ubuntu1), libuchardet0 (= 0.0.7-1build1), libudev1 (= 248.3-1ubuntu8), libunistring2 (= 0.9.10-6), liburi-perl (= 5.10-1), libuuid1 (= 2.37.2-4ubuntu1), libvariable-magic-perl (= 0.62-1build4), libwebp6 (= 0.6.1-2.1build1), libwww-curl-perl (= 4.17-7build1), libwww-curl-simple-perl (= 0.100191-2), libx11-6 (= 2:1.7.2-2), libx11-data (= 2:1.7.2-2), libxau6 (= 1:1.0.9-1build4), libxcb-render0 (= 1.14-3ubuntu2), libxcb-shm0 (= 1.14-3ubuntu2), libxcb1 (= 1.14-3ubuntu2), libxdmcp6 (= 1:1.1.3-0ubuntu4), libxext6 (= 2:1.3.4-1), libxft2 (= 2.3.3-0ubuntu4), libxml2 (= 2.9.12+dfsg-5), libxmuu1 (= 2:1.1.3-0ubuntu2), libxrender1 (= 1:0.9.10-1build3), libxss1 (= 1:1.2.3-1build1), libxt6 (= 1:1.2.0-1build1), libzstd1 (= 1.4.8+dfsg-3), linux-libc-dev (= 5.15.0-12.12), littler (= 0.3.14-1), login (= 1:4.8.1-1ubuntu10), lsb-base (= 11.1.0ubuntu3), lto-disabled-list (= 16), m4 (= 1.4.18-5ubuntu1), make (= 4.3-4ubuntu2), man-db (= 2.9.4-2build1), mawk (= 1.3.4.20200120-2build1), ncurses-base (= 6.3-1), ncurses-bin (= 6.3-1), openssl (= 3.0.0-1ubuntu1), patch (= 2.7.6-7build1), perl (= 5.32.1-3ubuntu3), perl-base (= 5.32.1-3ubuntu3), perl-modules-5.32 (= 5.32.1-3ubuntu3), pkg-config (= 0.29.2-1ubuntu2), po-debconf (= 1.0.21+nmu1), r-base-core (= 4.1.2-1ubuntu1), r-base-dev (= 4.1.2-1ubuntu1), r-bioc-annotationdbi (= 1.56.2-1), r-bioc-biobase (= 2.54.0-1), r-bioc-biocgenerics (= 0.40.0-1), r-bioc-biostrings (= 2.62.0-1), r-bioc-genomeinfodb (= 1.30.0-1), r-bioc-genomeinfodbdata (= 1.2.6-1), r-bioc-go.db (= 3.13.0-1), r-bioc-iranges (= 2.28.0-1), r-bioc-keggrest (= 1.34.0+dfsg-1), r-bioc-s4vectors (= 0.32.3-1), r-bioc-xvector (= 0.34.0-1), r-bioc-zlibbioc (= 1.40.0+dfsg-1), r-cran-askpass (= 1.1-2), r-cran-bit (= 4.0.4+dfsg-1), r-cran-bit64 (= 4.0.5-1), r-cran-bitops (= 1.0-7-1), r-cran-blob (= 1.2.2-1), r-cran-cachem (= 1.0.6-1), r-cran-crayon (= 1.4.2-1), r-cran-curl (= 4.3.2+dfsg-1), r-cran-dbi (= 1.1.1-1), r-cran-ellipsis (= 0.3.2-2), r-cran-fastmap (= 1.1.0-1), r-cran-glue (= 1.5.0-1), r-cran-httr (= 1.4.2-1), r-cran-jsonlite (= 1.7.2+dfsg-1), r-cran-littler (= 0.3.14-1), r-cran-memoise (= 2.0.0-1), r-cran-mime (= 0.12-1), r-cran-openssl (= 1.4.5+dfsg-1build1), r-cran-pkgconfig (= 2.0.3-2build1), r-cran-pkgkitten (= 0.2.2-2), r-cran-plogr (= 0.2.0-3build1), r-cran-png (= 0.1-7-4), r-cran-r6 (= 2.5.1-1), r-cran-rcpp (= 1.0.7-2), r-cran-rcurl (= 1.98-1.5-1), r-cran-rlang (= 0.4.12-2), r-cran-rsqlite (= 2.2.8-1), r-cran-sys (= 3.4-1), r-cran-vctrs (= 0.3.8-1ubuntu1), readline-common (= 8.1-2build1), rpcsvc-proto (= 1.4.2-0ubuntu5), sed (= 4.8-1), sensible-utils (= 0.0.17), sysvinit-utils (= 2.96-7ubuntu2), tar (= 1.34+dfsg-1build2), tzdata (= 2021e-1ubuntu1), ucf (= 3.0043), unzip (= 6.0-26ubuntu2), util-linux (= 2.37.2-4ubuntu1), x11-common (= 1:7.7+23ubuntu1), xauth (= 1:1.1-1build1), xdg-utils (= 1.1.3-4.1ubuntu1), xz-utils (= 5.2.5-2build1), zip (= 3.0-12build1), zlib1g (= 1:1.2.11.dfsg-2ubuntu7), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu7) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1637847784" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-bioc-gosemsim_2.20.0-1_arm64.deb ---------------------------------- new Debian package, version 2.0. size 880398 bytes: control archive=1759 bytes. 1141 bytes, 18 lines control 2563 bytes, 32 lines md5sums Package: r-bioc-gosemsim Version: 2.20.0-1 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian R Packages Maintainers Installed-Size: 1036 Depends: r-base-core (>= 4.1.2-1ubuntu1), r-api-4.0, r-api-bioc-3.14, r-bioc-annotationdbi, r-bioc-go.db, r-cran-rcpp, libc6 (>= 2.29), libgcc-s1 (>= 3.0), libstdc++6 (>= 5.2) Suggests: r-bioc-annotationhub, r-cran-biocmanager, r-cran-knitr, r-cran-rmarkdown, r-bioc-org.hs.eg.db, r-cran-testthat, r-cran-rocr Section: gnu-r Priority: optional Homepage: https://bioconductor.org/packages/GOSemSim/ Description: GO-terms semantic similarity measures The semantic comparisons of Gene Ontology (GO) annotations provide quantitative ways to compute similarities between genes and gene groups, and have became important basis for many bioinformatics analysis approaches. GOSemSim is an R package for semantic similarity computation among GO terms, sets of GO terms, gene products and gene clusters. 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./usr/share/doc/r-bioc-gosemsim/changelog.Debian.gz -rw-r--r-- root/root 9686 2021-11-25 13:43 ./usr/share/doc/r-bioc-gosemsim/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Type: any Build-Space: n/a Build-Time: 65 Distribution: jammy-proposed Host Architecture: arm64 Install-Time: 39 Job: r-bioc-gosemsim_2.20.0-1.dsc Machine Architecture: arm64 Package: r-bioc-gosemsim Package-Time: 106 Source-Version: 2.20.0-1 Space: n/a Status: successful Version: 2.20.0-1 -------------------------------------------------------------------------------- Finished at 2021-11-26T06:34:58Z Build needed 00:01:46, no disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=jammy --arch=arm64 PACKAGEBUILD-22451845 Scanning for processes to kill in build PACKAGEBUILD-22451845