https://launchpad.net/ubuntu/+source/r-bioc-gosemsim/2.20.0-1/+build/22451846 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-014 4.15.0-162-generic #170-Ubuntu SMP Mon Oct 18 11:28:54 UTC 2021 aarch64 Buildd toolchain package versions: launchpad-buildd_204~508~ubuntu18.04.1 python3-lpbuildd_204~508~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.9 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 26 Nov 06:32:39 ntpdate[1680]: adjust time server 10.211.37.1 offset -0.004298 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=jammy --arch=armhf PACKAGEBUILD-22451846 --image-type chroot /home/buildd/filecache-default/c698bf6badd89264039f6cdfcd7c983f87611a3e Creating target for build PACKAGEBUILD-22451846 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=jammy --arch=armhf PACKAGEBUILD-22451846 Starting target for build PACKAGEBUILD-22451846 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=jammy --arch=armhf PACKAGEBUILD-22451846 'deb http://ftpmaster.internal/ubuntu jammy main universe' 'deb http://ftpmaster.internal/ubuntu jammy-security main universe' 'deb http://ftpmaster.internal/ubuntu jammy-updates main universe' 'deb http://ftpmaster.internal/ubuntu jammy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-22451846 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=jammy --arch=armhf PACKAGEBUILD-22451846 Updating target for build PACKAGEBUILD-22451846 Get:1 http://ftpmaster.internal/ubuntu jammy InRelease [270 kB] Get:2 http://ftpmaster.internal/ubuntu jammy-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed InRelease [121 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main armhf Packages [1351 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main Translation-en [511 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/universe armhf Packages [13.3 MB] Get:8 http://ftpmaster.internal/ubuntu jammy/universe Translation-en [5556 kB] Get:9 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf Packages [168 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main Translation-en [60.6 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/universe armhf Packages [866 kB] Get:12 http://ftpmaster.internal/ubuntu jammy-proposed/universe Translation-en [431 kB] Fetched 22.8 MB in 5s (4955 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libsepol1 Use 'sudo apt autoremove' to remove it. The following packages will be REMOVED: libsemanage1* The following NEW packages will be installed: libsemanage2 libsepol2 libssl3 The following packages will be upgraded: apt base-files binutils binutils-arm-linux-gnueabihf binutils-common bsdutils ca-certificates cpp-11 dash debconf debianutils e2fsprogs g++-11 gcc-11 gcc-11-base gpg gpg-agent gpgconf gpgv grep libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libattr1 libbinutils libblkid1 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libext2fs2 libgcc-11-dev libgcc-s1 libgcrypt20 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libidn2-0 libip4tc2 libisl23 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 libmount1 libmpc3 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libseccomp2 libselinux1 libsemanage-common libsmartcols1 libsqlite3-0 libss2 libstdc++-11-dev libstdc++6 libtasn1-6 libtinfo6 libubsan1 libuuid1 libzstd1 linux-libc-dev lockfile-progs login logsave make mount ncurses-base ncurses-bin openssl passwd pkgbinarymangler sensible-utils tzdata usrmerge util-linux 88 upgraded, 3 newly installed, 1 to remove and 0 not upgraded. Need to get 61.1 MB of archives. After this operation, 338 MB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu jammy/main armhf debconf all 1.5.79 [126 kB] Get:2 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libpam0g armhf 1.4.0-10ubuntu1 [56.0 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libcrypt-dev armhf 1:4.4.26-1 [122 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libcrypt1 armhf 1:4.4.26-1 [94.1 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main armhf base-files armhf 12ubuntu2 [63.0 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main armhf bsdutils armhf 1:2.37.2-4ubuntu1 [86.9 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/main armhf debianutils armhf 5.5-1 [76.9 kB] Get:8 http://ftpmaster.internal/ubuntu jammy/main armhf dash armhf 0.5.11+git20210903+057cd650a4ed-3 [83.8 kB] Get:9 http://ftpmaster.internal/ubuntu jammy/main armhf grep armhf 3.7-1 [150 kB] Get:10 http://ftpmaster.internal/ubuntu jammy/main armhf login armhf 1:4.8.1-1ubuntu10 [186 kB] Get:11 http://ftpmaster.internal/ubuntu jammy/main armhf libncurses6 armhf 6.3-1 [87.5 kB] Get:12 http://ftpmaster.internal/ubuntu jammy/main armhf libncursesw6 armhf 6.3-1 [118 kB] Get:13 http://ftpmaster.internal/ubuntu jammy/main armhf libtinfo6 armhf 6.3-1 [88.2 kB] Get:14 http://ftpmaster.internal/ubuntu jammy/main armhf ncurses-bin armhf 6.3-1 [175 kB] Get:15 http://ftpmaster.internal/ubuntu jammy/main armhf libblkid1 armhf 2.37.2-4ubuntu1 [136 kB] Get:16 http://ftpmaster.internal/ubuntu jammy/main armhf libpcre2-8-0 armhf 10.39-3 [190 kB] Get:17 http://ftpmaster.internal/ubuntu jammy/main armhf libselinux1 armhf 3.3-1 [66.9 kB] Get:18 http://ftpmaster.internal/ubuntu jammy/main armhf libmount1 armhf 2.37.2-4ubuntu1 [151 kB] Get:19 http://ftpmaster.internal/ubuntu jammy/main armhf util-linux armhf 2.37.2-4ubuntu1 [1130 kB] Get:20 http://ftpmaster.internal/ubuntu jammy/main armhf ncurses-base all 6.3-1 [19.9 kB] Get:21 http://ftpmaster.internal/ubuntu jammy/main armhf libgpg-error0 armhf 1.42-3 [60.1 kB] Get:22 http://ftpmaster.internal/ubuntu jammy/main armhf libgcrypt20 armhf 1.9.4-3ubuntu2 [438 kB] Get:23 http://ftpmaster.internal/ubuntu jammy/main armhf libcc1-0 armhf 11.2.0-12ubuntu1 [45.8 kB] Get:24 http://ftpmaster.internal/ubuntu jammy/main armhf gcc-11-base armhf 11.2.0-12ubuntu1 [20.7 kB] Get:25 http://ftpmaster.internal/ubuntu jammy/main armhf libgcc-s1 armhf 11.2.0-12ubuntu1 [42.6 kB] Get:26 http://ftpmaster.internal/ubuntu jammy/main armhf libgomp1 armhf 11.2.0-12ubuntu1 [101 kB] Get:27 http://ftpmaster.internal/ubuntu jammy/main armhf libatomic1 armhf 11.2.0-12ubuntu1 [7624 B] Get:28 http://ftpmaster.internal/ubuntu jammy/main armhf libasan6 armhf 11.2.0-12ubuntu1 [2242 kB] Get:29 http://ftpmaster.internal/ubuntu jammy/main armhf libubsan1 armhf 11.2.0-12ubuntu1 [894 kB] Get:30 http://ftpmaster.internal/ubuntu jammy/main armhf g++-11 armhf 11.2.0-12ubuntu1 [9005 kB] Get:31 http://ftpmaster.internal/ubuntu jammy/main armhf libstdc++-11-dev armhf 11.2.0-12ubuntu1 [2180 kB] Get:32 http://ftpmaster.internal/ubuntu jammy/main armhf libgcc-11-dev armhf 11.2.0-12ubuntu1 [839 kB] Get:33 http://ftpmaster.internal/ubuntu jammy/main armhf gcc-11 armhf 11.2.0-12ubuntu1 [15.8 MB] Get:34 http://ftpmaster.internal/ubuntu jammy/main armhf cpp-11 armhf 11.2.0-12ubuntu1 [7833 kB] Get:35 http://ftpmaster.internal/ubuntu jammy/main armhf libstdc++6 armhf 11.2.0-12ubuntu1 [573 kB] Get:36 http://ftpmaster.internal/ubuntu jammy/main armhf libisl23 armhf 0.24-2 [581 kB] Get:37 http://ftpmaster.internal/ubuntu jammy/main armhf libmpc3 armhf 1.2.1-1 [39.5 kB] Get:38 http://ftpmaster.internal/ubuntu jammy/main armhf libzstd1 armhf 1.4.8+dfsg-3 [285 kB] Get:39 http://ftpmaster.internal/ubuntu jammy/main armhf libctf0 armhf 2.37-10ubuntu1 [93.7 kB] Get:40 http://ftpmaster.internal/ubuntu jammy/main armhf libctf-nobfd0 armhf 2.37-10ubuntu1 [93.8 kB] Get:41 http://ftpmaster.internal/ubuntu jammy/main armhf libbinutils armhf 2.37-10ubuntu1 [492 kB] Get:42 http://ftpmaster.internal/ubuntu jammy/main armhf binutils-common armhf 2.37-10ubuntu1 [213 kB] Get:43 http://ftpmaster.internal/ubuntu jammy/main armhf binutils armhf 2.37-10ubuntu1 [3174 B] Get:44 http://ftpmaster.internal/ubuntu jammy/main armhf binutils-arm-linux-gnueabihf armhf 2.37-10ubuntu1 [3057 kB] Get:45 http://ftpmaster.internal/ubuntu jammy/main armhf libapt-pkg6.0 armhf 2.3.13 [899 kB] Get:46 http://ftpmaster.internal/ubuntu jammy/main armhf gpgv armhf 2.2.27-2ubuntu1 [185 kB] Get:47 http://ftpmaster.internal/ubuntu jammy/main armhf libidn2-0 armhf 2.3.2-2 [67.8 kB] Get:48 http://ftpmaster.internal/ubuntu jammy/main armhf libp11-kit0 armhf 0.24.0-5 [218 kB] Get:49 http://ftpmaster.internal/ubuntu jammy/main armhf libtasn1-6 armhf 4.18.0-4 [36.3 kB] Get:50 http://ftpmaster.internal/ubuntu jammy/main armhf libgnutls30 armhf 3.7.2-2ubuntu1 [923 kB] Get:51 http://ftpmaster.internal/ubuntu jammy/main armhf libseccomp2 armhf 2.5.2-2ubuntu2 [47.7 kB] Get:52 http://ftpmaster.internal/ubuntu jammy/main armhf apt armhf 2.3.13 [1378 kB] Get:53 http://ftpmaster.internal/ubuntu jammy/main armhf libsepol2 armhf 3.3-1 [263 kB] Get:54 http://ftpmaster.internal/ubuntu jammy/main armhf libsemanage-common all 3.3-1 [10.1 kB] Get:55 http://ftpmaster.internal/ubuntu jammy/main armhf libsemanage2 armhf 3.3-1 [84.0 kB] Get:56 http://ftpmaster.internal/ubuntu jammy/main armhf passwd armhf 1:4.8.1-1ubuntu10 [729 kB] Get:57 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libpam-modules-bin armhf 1.4.0-10ubuntu1 [35.6 kB] Get:58 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libpam-modules armhf 1.4.0-10ubuntu1 [263 kB] Get:59 http://ftpmaster.internal/ubuntu jammy/main armhf logsave armhf 1.46.4-1ubuntu1 [10.3 kB] Get:60 http://ftpmaster.internal/ubuntu jammy/main armhf libext2fs2 armhf 1.46.4-1ubuntu1 [192 kB] Get:61 http://ftpmaster.internal/ubuntu jammy/main armhf e2fsprogs armhf 1.46.4-1ubuntu1 [565 kB] Get:62 http://ftpmaster.internal/ubuntu jammy/main armhf mount armhf 2.37.2-4ubuntu1 [125 kB] Get:63 http://ftpmaster.internal/ubuntu jammy/main armhf libattr1 armhf 1:2.5.1-1 [12.2 kB] Get:64 http://ftpmaster.internal/ubuntu jammy/main armhf libcom-err2 armhf 1.46.4-1ubuntu1 [9224 B] Get:65 http://ftpmaster.internal/ubuntu jammy/main armhf libk5crypto3 armhf 1.18.3-7 [83.1 kB] Get:66 http://ftpmaster.internal/ubuntu jammy/main armhf libkrb5support0 armhf 1.18.3-7 [30.3 kB] Get:67 http://ftpmaster.internal/ubuntu jammy/main armhf libkrb5-3 armhf 1.18.3-7 [330 kB] Get:68 http://ftpmaster.internal/ubuntu jammy/main armhf libgssapi-krb5-2 armhf 1.18.3-7 [120 kB] Get:69 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libpam-runtime all 1.4.0-10ubuntu1 [40.2 kB] Get:70 http://ftpmaster.internal/ubuntu jammy/main armhf libsmartcols1 armhf 2.37.2-4ubuntu1 [93.7 kB] Get:71 http://ftpmaster.internal/ubuntu jammy/main armhf libuuid1 armhf 2.37.2-4ubuntu1 [23.3 kB] Get:72 http://ftpmaster.internal/ubuntu jammy/main armhf libss2 armhf 1.46.4-1ubuntu1 [10.1 kB] Get:73 http://ftpmaster.internal/ubuntu jammy/main armhf sensible-utils all 0.0.17 [20.1 kB] Get:74 http://ftpmaster.internal/ubuntu jammy/main armhf usrmerge all 25ubuntu2 [54.7 kB] Get:75 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libssl3 armhf 3.0.0-1ubuntu1 [1575 kB] Get:76 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf openssl armhf 3.0.0-1ubuntu1 [1148 kB] Get:77 http://ftpmaster.internal/ubuntu jammy/main armhf ca-certificates all 20211016 [148 kB] Get:78 http://ftpmaster.internal/ubuntu jammy/main armhf libapparmor1 armhf 3.0.3-0ubuntu3 [32.2 kB] Get:79 http://ftpmaster.internal/ubuntu jammy/main armhf libip4tc2 armhf 1.8.7-1ubuntu4 [17.7 kB] Get:80 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libkmod2 armhf 28-1ubuntu5 [40.9 kB] Get:81 http://ftpmaster.internal/ubuntu jammy/main armhf libsqlite3-0 armhf 3.36.0-2 [571 kB] Get:82 http://ftpmaster.internal/ubuntu jammy/main armhf tzdata all 2021e-1ubuntu1 [343 kB] Get:83 http://ftpmaster.internal/ubuntu jammy/main armhf libgdbm6 armhf 1.22-1 [31.0 kB] Get:84 http://ftpmaster.internal/ubuntu jammy/main armhf gpg armhf 2.2.27-2ubuntu1 [483 kB] Get:85 http://ftpmaster.internal/ubuntu jammy/main armhf gpgconf armhf 2.2.27-2ubuntu1 [114 kB] Get:86 http://ftpmaster.internal/ubuntu jammy/main armhf gpg-agent armhf 2.2.27-2ubuntu1 [227 kB] Get:87 http://ftpmaster.internal/ubuntu jammy/main armhf libgdbm-compat4 armhf 1.22-1 [6076 B] Get:88 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf linux-libc-dev armhf 5.15.0-12.12 [1228 kB] Get:89 http://ftpmaster.internal/ubuntu jammy/main armhf lockfile-progs armhf 0.1.19 [9508 B] Get:90 http://ftpmaster.internal/ubuntu jammy/main armhf make armhf 4.3-4ubuntu2 [162 kB] Get:91 http://ftpmaster.internal/ubuntu jammy/main armhf pkgbinarymangler all 149 [32.4 kB] debconf: delaying package configuration, since apt-utils is 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Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-22451846 armhf jammy-proposed -c chroot:build-PACKAGEBUILD-22451846 --arch=armhf --dist=jammy-proposed --nolog r-bioc-gosemsim_2.20.0-1.dsc Initiating build PACKAGEBUILD-22451846 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-162-generic #170-Ubuntu SMP Mon Oct 18 11:28:54 UTC 2021 armv7l sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-arm64-014.buildd +==============================================================================+ | r-bioc-gosemsim 2.20.0-1 (armhf) Fri, 26 Nov 2021 06:33:20 +0000 | +==============================================================================+ Package: r-bioc-gosemsim Version: 2.20.0-1 Source Version: 2.20.0-1 Distribution: jammy-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-22451846/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-bioc-gosemsim_2.20.0-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/r-bioc-gosemsim-nkH0RG/r-bioc-gosemsim-2.20.0' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-gosemsim-nkH0RG' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-Zy7r0t/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-Zy7r0t/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Zy7r0t/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-Zy7r0t/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Zy7r0t/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-Zy7r0t/apt_archive ./ Packages [432 B] Fetched 1738 B in 0s (75.8 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libsepol1 Use 'apt autoremove' to remove it. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 650 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-Zy7r0t/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [650 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 650 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13160 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-annotationdbi, r-bioc-go.db, r-cran-rcpp Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-annotationdbi, r-bioc-go.db, r-cran-rcpp dpkg-deb: building package 'sbuild-build-depends-r-bioc-gosemsim-dummy' in '/<>/resolver-Zy7r0t/apt_archive/sbuild-build-depends-r-bioc-gosemsim-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-gosemsim-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-Zy7r0t/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Zy7r0t/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-Zy7r0t/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Zy7r0t/apt_archive ./ Sources [536 B] Get:5 copy:/<>/resolver-Zy7r0t/apt_archive ./ Packages [614 B] Fetched 2113 B in 0s (87.6 kB/s) Reading package lists... Reading package lists... Install r-bioc-gosemsim build dependencies (apt-based resolver) --------------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libsepol1 Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils dctrl-tools debhelper debugedit dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-11 groff-base icu-devtools intltool-debian libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdw1 libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-11-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu67 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libldap-2.5-0 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev librtmp1 libsasl2-2 libsasl2-modules-db libscalar-list-utils-perl libsigsegv2 libsm6 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp6 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db pkg-config po-debconf r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biostrings r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-go.db r-bioc-iranges r-bioc-keggrest r-bioc-s4vectors r-bioc-xvector r-bioc-zlibbioc r-cran-askpass r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-cachem r-cran-crayon r-cran-curl r-cran-dbi r-cran-ellipsis r-cran-fastmap r-cran-glue r-cran-httr r-cran-jsonlite r-cran-littler r-cran-memoise r-cran-mime r-cran-openssl r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-r6 r-cran-rcpp r-cran-rcurl r-cran-rlang r-cran-rsqlite r-cran-sys r-cran-vctrs ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc gfortran-11-doc libcoarrays-dev groff liblapack-doc icu-doc liblzma-doc ncurses-doc libscalar-number-perl readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk libbusiness-isbn-perl libwww-perl libcurl4-gnutls-dev m4-doc apparmor less www-browser libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo r-cran-runit r-bioc-org.hs.eg.db r-bioc-graph r-bioc-biocstyle r-cran-knitr r-bioc-all r-bioc-genomicranges r-bioc-delayedarray r-bioc-rsamtools r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-bioc-bsgenome r-bioc-genomicfeatures r-bioc-genomicalignments r-cran-markdown r-bioc-summarizedexperiment r-cran-matrix r-bioc-shortread r-cran-data.table r-cran-testthat r-cran-roxygen2 r-cran-rmarkdown r-cran-covr r-cran-pillar r-cran-rstudioapi r-cran-magrittr r-cran-rmysql r-cran-dplyr r-cran-forcats r-cran-ggplot2 r-cran-r.utils r-cran-stringr r-cran-waldo r-cran-withr r-cran-httpuv r-cran-jpeg r-cran-readr r-cran-xml2 r-cran-plyr r-cran-sf r-cran-getopt r-cran-digest r-cran-inline r-cran-xml r-cran-cli r-cran-gert r-cran-gh r-cran-hms r-cran-rvest r-cran-zeallot Recommended packages: devscripts cme git-buildpackage curl | wget | lynx bzip2-doc libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libclone-perl libldap-common libdevel-partialdump-perl libpng-tools publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl r-recommended r-doc-html r-cran-runit r-cran-testthat r-cran-withr r-cran-mockery r-cran-httpuv r-cran-webutils r-cran-sp r-cran-sodium r-cran-rmarkdown r-cran-dbitest r-cran-tibble r-cran-generics r-cran-xml2 r-cran-dplyr r-cran-waldo libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils dctrl-tools debhelper debugedit dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-11 groff-base icu-devtools intltool-debian libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdw1 libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-11-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu67 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libldap-2.5-0 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev librtmp1 libsasl2-2 libsasl2-modules-db libscalar-list-utils-perl libsigsegv2 libsm6 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp6 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db pkg-config po-debconf r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biostrings r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-go.db r-bioc-iranges r-bioc-keggrest r-bioc-s4vectors r-bioc-xvector r-bioc-zlibbioc r-cran-askpass r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-cachem r-cran-crayon r-cran-curl r-cran-dbi r-cran-ellipsis r-cran-fastmap r-cran-glue r-cran-httr r-cran-jsonlite r-cran-littler r-cran-memoise r-cran-mime r-cran-openssl r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-r6 r-cran-rcpp r-cran-rcurl r-cran-rlang r-cran-rsqlite r-cran-sys r-cran-vctrs sbuild-build-depends-r-bioc-gosemsim-dummy ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 213 newly installed, 0 to remove and 0 not upgraded. Need to get 154 MB of archives. After this operation, 385 MB of additional disk space will be used. 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[6628 B] Get:22 http://ftpmaster.internal/ubuntu jammy/main armhf libxdmcp6 armhf 1:1.1.3-0ubuntu4 [9552 B] Get:23 http://ftpmaster.internal/ubuntu jammy/main armhf libxcb1 armhf 1.14-3ubuntu2 [46.2 kB] Get:24 http://ftpmaster.internal/ubuntu jammy/main armhf libx11-data all 2:1.7.2-2 [123 kB] Get:25 http://ftpmaster.internal/ubuntu jammy/main armhf libx11-6 armhf 2:1.7.2-2 [601 kB] Get:26 http://ftpmaster.internal/ubuntu jammy/main armhf libxext6 armhf 2:1.3.4-1 [26.4 kB] Get:27 http://ftpmaster.internal/ubuntu jammy/main armhf libxmuu1 armhf 2:1.1.3-0ubuntu2 [9270 B] Get:28 http://ftpmaster.internal/ubuntu jammy/main armhf xauth armhf 1:1.1-1build1 [23.9 kB] Get:29 http://ftpmaster.internal/ubuntu jammy/main armhf libsigsegv2 armhf 2.13-1ubuntu2 [13.7 kB] Get:30 http://ftpmaster.internal/ubuntu jammy/main armhf m4 armhf 1.4.18-5ubuntu1 [192 kB] Get:31 http://ftpmaster.internal/ubuntu jammy/main armhf autoconf all 2.71-2 [338 kB] Get:32 http://ftpmaster.internal/ubuntu jammy/main 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dh-strip-nondeterminism all 1.12.1-1 [5200 B] Get:43 http://ftpmaster.internal/ubuntu jammy/main armhf libdw1 armhf 0.186-1 [228 kB] Get:44 http://ftpmaster.internal/ubuntu jammy/main armhf debugedit armhf 1:5.0-3 [43.2 kB] Get:45 http://ftpmaster.internal/ubuntu jammy/main armhf dwz armhf 0.14-1build1 [99.2 kB] Get:46 http://ftpmaster.internal/ubuntu jammy/main armhf gettext armhf 0.21-4ubuntu3 [755 kB] Get:47 http://ftpmaster.internal/ubuntu jammy/main armhf intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:48 http://ftpmaster.internal/ubuntu jammy/main armhf po-debconf all 1.0.21+nmu1 [233 kB] Get:49 http://ftpmaster.internal/ubuntu jammy/main armhf debhelper all 13.5.2ubuntu1 [926 kB] Get:50 http://ftpmaster.internal/ubuntu jammy/main armhf zip armhf 3.0-12build1 [166 kB] Get:51 http://ftpmaster.internal/ubuntu jammy/main armhf unzip armhf 6.0-26ubuntu2 [162 kB] Get:52 http://ftpmaster.internal/ubuntu jammy/main armhf libpaper1 armhf 1.1.28build1 [12.9 kB] Get:53 http://ftpmaster.internal/ubuntu jammy/main armhf libpaper-utils armhf 1.1.28build1 [8238 B] Get:54 http://ftpmaster.internal/ubuntu jammy/main armhf xdg-utils all 1.1.3-4.1ubuntu1 [62.2 kB] Get:55 http://ftpmaster.internal/ubuntu jammy/main armhf libblas3 armhf 3.9.0-3ubuntu3 [113 kB] Get:56 http://ftpmaster.internal/ubuntu jammy/main armhf libbrotli1 armhf 1.0.9-2build4 [306 kB] Get:57 http://ftpmaster.internal/ubuntu jammy/main armhf libfreetype6 armhf 2.11.0+dfsg-1 [323 kB] Get:58 http://ftpmaster.internal/ubuntu jammy/main armhf fonts-dejavu-core all 2.37-2build1 [1041 kB] Get:59 http://ftpmaster.internal/ubuntu jammy/main armhf fontconfig-config all 2.13.1-4.2ubuntu4 [29.1 kB] Get:60 http://ftpmaster.internal/ubuntu jammy/main armhf libfontconfig1 armhf 2.13.1-4.2ubuntu4 [109 kB] Get:61 http://ftpmaster.internal/ubuntu jammy/main armhf libpixman-1-0 armhf 0.40.0-1build3 [177 kB] Get:62 http://ftpmaster.internal/ubuntu jammy/main armhf libxcb-render0 armhf 1.14-3ubuntu2 [15.3 kB] Get:63 http://ftpmaster.internal/ubuntu jammy/main armhf libxcb-shm0 armhf 1.14-3ubuntu2 [5818 B] Get:64 http://ftpmaster.internal/ubuntu jammy/main armhf libxrender1 armhf 1:0.9.10-1build3 [16.3 kB] Get:65 http://ftpmaster.internal/ubuntu jammy/main armhf libcairo2 armhf 1.16.0-5ubuntu2 [549 kB] Get:66 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libsasl2-modules-db armhf 2.1.27+dfsg2-2build1 [19.1 kB] Get:67 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libsasl2-2 armhf 2.1.27+dfsg2-2build1 [50.7 kB] Get:68 http://ftpmaster.internal/ubuntu jammy/main armhf libldap-2.5-0 armhf 2.5.6+dfsg-1~exp1ubuntu1 [162 kB] Get:69 http://ftpmaster.internal/ubuntu jammy/main armhf libnghttp2-14 armhf 1.43.0-1build1 [70.0 kB] Get:70 http://ftpmaster.internal/ubuntu jammy/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2build3 [53.0 kB] Get:71 http://ftpmaster.internal/ubuntu jammy/main armhf libssh-4 armhf 0.9.6-1 [163 kB] Get:72 http://ftpmaster.internal/ubuntu 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jammy/main armhf libthai0 armhf 0.1.28-4.1 [15.8 kB] Get:83 http://ftpmaster.internal/ubuntu jammy/main armhf libpango-1.0-0 armhf 1.48.10+ds1-1 [176 kB] Get:84 http://ftpmaster.internal/ubuntu jammy/main armhf libpangoft2-1.0-0 armhf 1.48.10+ds1-1 [44.4 kB] Get:85 http://ftpmaster.internal/ubuntu jammy/main armhf libpangocairo-1.0-0 armhf 1.48.10+ds1-1 [33.0 kB] Get:86 http://ftpmaster.internal/ubuntu jammy/main armhf libtcl8.6 armhf 8.6.12+dfsg-1 [912 kB] Get:87 http://ftpmaster.internal/ubuntu jammy/main armhf libdeflate0 armhf 1.8-1ubuntu1 [46.1 kB] Get:88 http://ftpmaster.internal/ubuntu jammy/main armhf libjbig0 armhf 2.1-3.1build2 [25.1 kB] Get:89 http://ftpmaster.internal/ubuntu jammy/main armhf libwebp6 armhf 0.6.1-2.1build1 [163 kB] Get:90 http://ftpmaster.internal/ubuntu jammy/main armhf libtiff5 armhf 4.3.0-2 [165 kB] Get:91 http://ftpmaster.internal/ubuntu jammy/main armhf libxft2 armhf 2.3.3-0ubuntu4 [34.8 kB] Get:92 http://ftpmaster.internal/ubuntu jammy/main armhf 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armhf 3.9.0-3ubuntu3 [120 kB] Get:103 http://ftpmaster.internal/ubuntu jammy/main armhf liblapack-dev armhf 3.9.0-3ubuntu3 [1960 kB] Get:104 http://ftpmaster.internal/ubuntu jammy/main armhf libncurses-dev armhf 6.3-1 [342 kB] Get:105 http://ftpmaster.internal/ubuntu jammy/main armhf libncurses5-dev armhf 6.3-1 [780 B] Get:106 http://ftpmaster.internal/ubuntu jammy/main armhf libreadline-dev armhf 8.1-2build1 [151 kB] Get:107 http://ftpmaster.internal/ubuntu jammy/main armhf libjpeg-turbo8-dev armhf 2.1.1-0ubuntu1 [231 kB] Get:108 http://ftpmaster.internal/ubuntu jammy/main armhf libjpeg8-dev armhf 8c-2ubuntu8 [1554 B] Get:109 http://ftpmaster.internal/ubuntu jammy/main armhf libjpeg-dev armhf 8c-2ubuntu8 [1554 B] Get:110 http://ftpmaster.internal/ubuntu jammy/main armhf libpcre2-16-0 armhf 10.39-3 [173 kB] Get:111 http://ftpmaster.internal/ubuntu jammy/main armhf libpcre2-32-0 armhf 10.39-3 [163 kB] Get:112 http://ftpmaster.internal/ubuntu jammy/main armhf libpcre2-posix3 armhf 10.39-3 [5544 B] Get:113 http://ftpmaster.internal/ubuntu jammy/main armhf libpcre2-dev armhf 10.39-3 [645 kB] Get:114 http://ftpmaster.internal/ubuntu jammy/main armhf libpcre16-3 armhf 2:8.39-13build4 [143 kB] Get:115 http://ftpmaster.internal/ubuntu jammy/main armhf libpcre32-3 armhf 2:8.39-13build4 [135 kB] Get:116 http://ftpmaster.internal/ubuntu jammy/main armhf libpcrecpp0v5 armhf 2:8.39-13build4 [14.0 kB] Get:117 http://ftpmaster.internal/ubuntu jammy/main armhf libpcre3-dev armhf 2:8.39-13build4 [514 kB] Get:118 http://ftpmaster.internal/ubuntu jammy/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2ubuntu7 [157 kB] Get:119 http://ftpmaster.internal/ubuntu jammy/main armhf libpng-dev armhf 1.6.37-3build4 [176 kB] Get:120 http://ftpmaster.internal/ubuntu jammy/main armhf libbz2-dev armhf 1.0.8-4ubuntu4 [29.8 kB] Get:121 http://ftpmaster.internal/ubuntu jammy/main armhf liblzma-dev armhf 5.2.5-2build1 [149 kB] Get:122 http://ftpmaster.internal/ubuntu jammy/main armhf icu-devtools armhf 67.1-7ubuntu1 [183 kB] Get:123 http://ftpmaster.internal/ubuntu jammy/main armhf libicu-dev armhf 67.1-7ubuntu1 [10.8 MB] Get:124 http://ftpmaster.internal/ubuntu jammy/main armhf pkg-config armhf 0.29.2-1ubuntu2 [46.0 kB] Get:125 http://ftpmaster.internal/ubuntu jammy/universe armhf r-base-dev all 4.1.2-1ubuntu1 [4306 B] Get:126 http://ftpmaster.internal/ubuntu jammy/main armhf libfile-which-perl all 1.23-1 [13.8 kB] Get:127 http://ftpmaster.internal/ubuntu jammy/universe armhf libswitch-perl all 2.17-2.1 [18.3 kB] Get:128 http://ftpmaster.internal/ubuntu jammy/main armhf libencode-locale-perl all 1.05-1.1 [11.8 kB] Get:129 http://ftpmaster.internal/ubuntu jammy/main armhf libtimedate-perl all 2.3300-2 [34.0 kB] Get:130 http://ftpmaster.internal/ubuntu jammy/main armhf libhttp-date-perl all 6.05-1 [9920 B] Get:131 http://ftpmaster.internal/ubuntu jammy/main armhf libio-html-perl all 1.004-2 [15.4 kB] Get:132 http://ftpmaster.internal/ubuntu jammy/main armhf liblwp-mediatypes-perl all 6.04-1 [19.5 kB] Get:133 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf liburi-perl all 5.10-1 [78.8 kB] Get:134 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libhttp-message-perl all 6.35-1 [77.0 kB] Get:135 http://ftpmaster.internal/ubuntu jammy/main armhf libparams-util-perl armhf 1.102-1build2 [21.5 kB] Get:136 http://ftpmaster.internal/ubuntu jammy/main armhf libsub-install-perl all 0.928-1.1 [9972 B] Get:137 http://ftpmaster.internal/ubuntu jammy/main armhf libdata-optlist-perl all 0.112-1 [11.0 kB] Get:138 http://ftpmaster.internal/ubuntu jammy/main armhf libb-hooks-op-check-perl armhf 0.22-1build4 [10.2 kB] Get:139 http://ftpmaster.internal/ubuntu jammy/main armhf libdynaloader-functions-perl all 0.003-1.1 [12.1 kB] Get:140 http://ftpmaster.internal/ubuntu jammy/main armhf libdevel-callchecker-perl armhf 0.008-1ubuntu3 [14.6 kB] Get:141 http://ftpmaster.internal/ubuntu jammy/main armhf libparams-classify-perl armhf 0.015-1build4 [20.5 kB] Get:142 http://ftpmaster.internal/ubuntu jammy/main armhf libmodule-runtime-perl all 0.016-1 [16.2 kB] Get:143 http://ftpmaster.internal/ubuntu jammy/main armhf libtry-tiny-perl all 0.30-1 [20.5 kB] Get:144 http://ftpmaster.internal/ubuntu jammy/main armhf libmodule-implementation-perl all 0.09-1.1 [11.6 kB] Get:145 http://ftpmaster.internal/ubuntu jammy/universe armhf libscalar-list-utils-perl armhf 1:1.59-1 [54.7 kB] Get:146 http://ftpmaster.internal/ubuntu jammy/main armhf libpackage-stash-perl all 0.39-1 [19.1 kB] Get:147 http://ftpmaster.internal/ubuntu jammy/universe armhf libclass-load-perl all 0.25-1 [13.5 kB] Get:148 http://ftpmaster.internal/ubuntu jammy/universe armhf libclass-load-xs-perl armhf 0.10-1build6 [13.0 kB] Get:149 http://ftpmaster.internal/ubuntu jammy/main armhf libsub-exporter-progressive-perl all 0.001013-1 [6784 B] Get:150 http://ftpmaster.internal/ubuntu jammy/universe armhf libdevel-globaldestruction-perl all 0.14-1.1 [6916 B] Get:151 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armhf libsub-name-perl armhf 0.26-1build2 [11.0 kB] Get:161 http://ftpmaster.internal/ubuntu jammy/universe armhf libpackage-deprecationmanager-perl all 0.17-1.1 [15.5 kB] Get:162 http://ftpmaster.internal/ubuntu jammy/main armhf libpackage-stash-xs-perl armhf 0.29-1build4 [17.7 kB] Get:163 http://ftpmaster.internal/ubuntu jammy/universe armhf libmoose-perl armhf 2.2200-1 [749 kB] Get:164 http://ftpmaster.internal/ubuntu jammy/main armhf libvariable-magic-perl armhf 0.62-1build4 [33.0 kB] Get:165 http://ftpmaster.internal/ubuntu jammy/main armhf libb-hooks-endofscope-perl all 0.25-1 [17.8 kB] Get:166 http://ftpmaster.internal/ubuntu jammy/main armhf libsub-identify-perl armhf 0.14-1build4 [10.2 kB] Get:167 http://ftpmaster.internal/ubuntu jammy/main armhf libnamespace-clean-perl all 0.27-1 [13.6 kB] Get:168 http://ftpmaster.internal/ubuntu jammy/main armhf libcurl3-gnutls armhf 7.74.0-1.3ubuntu2 [234 kB] Get:169 http://ftpmaster.internal/ubuntu jammy/universe armhf libwww-curl-perl 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http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] Get:190 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-pkgkitten all 0.2.2-2 [25.3 kB] Get:191 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-rcpp armhf 1.0.7-2 [1950 kB] Get:192 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-plogr all 0.2.0-3build1 [15.1 kB] Get:193 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-rsqlite armhf 2.2.8-1 [1021 kB] Get:194 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-curl armhf 4.3.2+dfsg-1 [154 kB] Get:195 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-jsonlite armhf 1.7.2+dfsg-1 [443 kB] Get:196 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-mime armhf 0.12-1 [35.5 kB] Get:197 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-sys armhf 3.4-1 [42.1 kB] Get:198 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-askpass armhf 1.1-2 [22.1 kB] Get:199 http://ftpmaster.internal/ubuntu jammy-proposed/universe armhf r-cran-openssl armhf 1.4.5+dfsg-1build1 [385 kB] Get:200 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-r6 all 2.5.1-1 [99.0 kB] Get:201 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-httr all 1.4.2-1 [478 kB] Get:202 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-png armhf 0.1-7-4 [38.6 kB] Get:203 http://ftpmaster.internal/ubuntu jammy-proposed/universe armhf r-bioc-zlibbioc all 1.40.0+dfsg-1 [9270 B] Get:204 http://ftpmaster.internal/ubuntu jammy-proposed/universe armhf r-bioc-xvector armhf 0.34.0-1 [607 kB] Get:205 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-bitops armhf 1.0-7-1 [29.4 kB] Get:206 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-rcurl armhf 1.98-1.5-1 [806 kB] Get:207 http://ftpmaster.internal/ubuntu jammy/universe armhf r-bioc-genomeinfodbdata all 1.2.6-1 [11.0 MB] Get:208 http://ftpmaster.internal/ubuntu jammy-proposed/universe armhf r-bioc-genomeinfodb all 1.30.0-1 [3951 kB] Get:209 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-crayon all 1.4.2-1 [159 kB] Get:210 http://ftpmaster.internal/ubuntu jammy-proposed/universe armhf r-bioc-biostrings armhf 2.62.0-1 [14.1 MB] Get:211 http://ftpmaster.internal/ubuntu jammy-proposed/universe armhf r-bioc-keggrest all 1.34.0+dfsg-1 [179 kB] Get:212 http://ftpmaster.internal/ubuntu jammy-proposed/universe armhf r-bioc-annotationdbi all 1.56.2-1 [4928 kB] Get:213 http://ftpmaster.internal/ubuntu jammy/universe armhf r-bioc-go.db all 3.13.0-1 [20.3 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 154 MB in 4s (34.4 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 13160 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.37.2-4ubuntu1_armhf.deb ... Unpacking bsdextrautils (2.37.2-4ubuntu1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../001-libuchardet0_0.0.7-1build1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1build1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-7_armhf.deb ... Unpacking groff-base (1.22.4-7) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../003-libpipeline1_1.5.4-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.4-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.4-2build1_armhf.deb ... Unpacking man-db (2.9.4-2build1) ... Selecting previously unselected package libmd0:armhf. Preparing to unpack .../005-libmd0_1.0.4-1_armhf.deb ... Unpacking libmd0:armhf (1.0.4-1) ... 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Selecting previously unselected package r-bioc-keggrest. Preparing to unpack .../209-r-bioc-keggrest_1.34.0+dfsg-1_all.deb ... Unpacking r-bioc-keggrest (1.34.0+dfsg-1) ... Selecting previously unselected package r-bioc-annotationdbi. Preparing to unpack .../210-r-bioc-annotationdbi_1.56.2-1_all.deb ... Unpacking r-bioc-annotationdbi (1.56.2-1) ... Selecting previously unselected package r-bioc-go.db. Preparing to unpack .../211-r-bioc-go.db_3.13.0-1_all.deb ... Unpacking r-bioc-go.db (3.13.0-1) ... Selecting previously unselected package sbuild-build-depends-r-bioc-gosemsim-dummy. Preparing to unpack .../212-sbuild-build-depends-r-bioc-gosemsim-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-r-bioc-gosemsim-dummy (0.invalid.0) ... Setting up libexpat1:armhf (2.4.1-3) ... Setting up libpcrecpp0v5:armhf (2:8.39-13build4) ... Setting up libpipeline1:armhf (1.5.4-1) ... Setting up libgraphite2-3:armhf (1.3.14-1build1) ... Setting up libpixman-1-0:armhf (0.40.0-1build3) ... Setting up libfile-which-perl (1.23-1) ... Setting up libxau6:armhf (1:1.0.9-1build4) ... Setting up libncurses-dev:armhf (6.3-1) ... Setting up libpsl5:armhf (0.21.0-1.2build1) ... Setting up bsdextrautils (2.37.2-4ubuntu1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libpcre16-3:armhf (2:8.39-13build4) ... Setting up libicu67:armhf (67.1-7ubuntu1) ... Setting up libdynaloader-functions-perl (0.003-1.1) ... Setting up libdatrie1:armhf (0.2.13-1ubuntu3) ... Setting up libmagic-mgc (1:5.41-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libsub-identify-perl (0.14-1build4) ... Setting up libglib2.0-0:armhf (2.70.1-1) ... No schema files found: doing nothing. Setting up libscalar-list-utils-perl (1:1.59-1) ... Setting up unzip (6.0-26ubuntu2) ... Setting up libdebhelper-perl (13.5.2ubuntu1) ... Setting up libbrotli1:armhf (1.0.9-2build4) ... Setting up liblwp-mediatypes-perl (6.04-1) ... Setting up x11-common (1:7.7+23ubuntu1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libtry-tiny-perl (0.30-1) ... Setting up libnghttp2-14:armhf (1.43.0-1build1) ... Setting up libmagic1:armhf (1:5.41-2) ... Setting up libdeflate0:armhf (1.8-1ubuntu1) ... Setting up gettext-base (0.21-4ubuntu3) ... Setting up libencode-locale-perl (1.05-1.1) ... Setting up file (1:5.41-2) ... Setting up libreadline-dev:armhf (8.1-2build1) ... Setting up libjbig0:armhf (2.1-3.1build2) ... Setting up libpcre2-16-0:armhf (10.39-3) ... Setting up libsub-install-perl (0.928-1.1) ... Setting up libsasl2-modules-db:armhf (2.1.27+dfsg2-2build1) ... Setting up zip (3.0-12build1) ... Setting up libpackage-stash-xs-perl (0.29-1build4) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libpcre2-32-0:armhf (10.39-3) ... Setting up libblas3:armhf (3.9.0-3ubuntu3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libalgorithm-c3-perl (0.11-1) ... Setting up libswitch-perl (2.17-2.1) ... Setting up libfreetype6:armhf (2.11.0+dfsg-1) ... Setting up libx11-data (2:1.7.2-2) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2build3) ... Setting up libsigsegv2:armhf (2.13-1ubuntu2) ... Setting up libfribidi0:armhf (1.0.8-2ubuntu2) ... Setting up libpcre32-3:armhf (2:8.39-13build4) ... Setting up libvariable-magic-perl (0.62-1build4) ... Setting up libio-html-perl (1.004-2) ... Setting up libtcl8.6:armhf (8.6.12+dfsg-1) ... Setting up autopoint (0.21-4ubuntu3) ... Setting up libwebp6:armhf (0.6.1-2.1build1) ... Setting up libb-hooks-op-check-perl (0.22-1build4) ... Setting up icu-devtools (67.1-7ubuntu1) ... Setting up pkg-config (0.29.2-1ubuntu2) ... Setting up fonts-dejavu-core (2.37-2build1) ... Setting up ucf (3.0043) ... Setting up libjpeg-turbo8:armhf (2.1.1-0ubuntu1) ... Setting up libparams-util-perl (1.102-1build2) ... Setting up libsasl2-2:armhf (2.1.27+dfsg2-2build1) ... Setting up libssh-4:armhf (0.9.6-1) ... Setting up libgfortran5:armhf (11.2.0-12ubuntu1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up liblzma-dev:armhf (5.2.5-2build1) ... Setting up libsub-name-perl (0.26-1build2) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2ubuntu7) ... Setting up libpcre2-posix3:armhf (10.39-3) ... Setting up libmd0:armhf (1.0.4-1) ... Setting up libuchardet0:armhf (0.0.7-1build1) ... Setting up libncurses5-dev:armhf (6.3-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libharfbuzz0b:armhf (2.7.4-1ubuntu2) ... Setting up libthai-data (0.1.28-4.1) ... Setting up libdevel-globaldestruction-perl (0.14-1.1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libbsd0:armhf (0.11.3-1ubuntu3) ... Setting up libelf1:armhf (0.186-1) ... Setting up libicu-dev:armhf (67.1-7ubuntu1) ... Setting up libxml2:armhf (2.9.12+dfsg-5) ... Setting up xdg-utils (1.1.3-4.1ubuntu1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up liburi-perl (5.10-1) ... Setting up libblas-dev:armhf (3.9.0-3ubuntu3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode Setting up dctrl-tools (2.24-3build1) ... Setting up libbz2-dev:armhf (1.0.8-4ubuntu4) ... Setting up libjpeg8:armhf (8c-2ubuntu8) ... Setting up libfile-stripnondeterminism-perl (1.12.1-1) ... Setting up libpaper1:armhf (1.1.28build1) ... Creating config file /etc/papersize with new version Setting up libice6:armhf (2:1.0.10-1build1) ... Setting up libhttp-date-perl (6.05-1) ... Setting up libdw1:armhf (0.186-1) ... Setting up libjpeg-turbo8-dev:armhf (2.1.1-0ubuntu1) ... Setting up libxdmcp6:armhf (1:1.1.3-0ubuntu4) ... Setting up liblapack3:armhf (3.9.0-3ubuntu3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libxcb1:armhf (1.14-3ubuntu2) ... Setting up gettext (0.21-4ubuntu3) ... Setting up libpcre2-dev:armhf (10.39-3) ... Setting up libtool (2.4.6-15build1) ... Setting up libxcb-render0:armhf (1.14-3ubuntu2) ... Setting up libpcre3-dev:armhf (2:8.39-13build4) ... Setting up libgfortran-11-dev:armhf (11.2.0-12ubuntu1) ... Setting up fontconfig-config (2.13.1-4.2ubuntu4) ... Setting up libpng-dev:armhf (1.6.37-3build4) ... Setting up m4 (1.4.18-5ubuntu1) ... Setting up libxcb-shm0:armhf (1.14-3ubuntu2) ... Setting up libpaper-utils (1.1.28build1) ... Setting up libclass-c3-perl (0.35-1) ... Setting up libdevel-callchecker-perl (0.008-1ubuntu3) ... Setting up libldap-2.5-0:armhf (2.5.6+dfsg-1~exp1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libthai0:armhf (0.1.28-4.1) ... Setting up liblapack-dev:armhf (3.9.0-3ubuntu3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode Setting up libdata-optlist-perl (0.112-1) ... Setting up gfortran-11 (11.2.0-12ubuntu1) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.12.1-1) ... Setting up dwz (0.14-1build1) ... Setting up groff-base (1.22.4-7) ... Setting up debugedit (1:5.0-3) ... Setting up libcurl4:armhf (7.74.0-1.3ubuntu2) ... Setting up libx11-6:armhf (2:1.7.2-2) ... Setting up libtiff5:armhf (4.3.0-2) ... Setting up libfontconfig1:armhf (2.13.1-4.2ubuntu4) ... Setting up libmro-compat-perl (0.13-1) ... Setting up libjpeg8-dev:armhf (8c-2ubuntu8) ... Setting up libsm6:armhf (2:1.2.3-1build1) ... Setting up libxmuu1:armhf (2:1.1.3-0ubuntu2) ... Setting up libsub-exporter-perl (0.988-1) ... Setting up libhttp-message-perl (6.35-1) ... Setting up libeval-closure-perl (0.14-1) ... Setting up automake (1:1.16.5-1.1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up fontconfig (2.13.1-4.2ubuntu4) ... Regenerating fonts cache... done. Setting up libxrender1:armhf (1:0.9.10-1build3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libparams-classify-perl (0.015-1build4) ... Setting up libpango-1.0-0:armhf (1.48.10+ds1-1) ... Setting up libjpeg-dev:armhf (8c-2ubuntu8) ... Setting up libxext6:armhf (2:1.3.4-1) ... Setting up libcurl3-gnutls:armhf (7.74.0-1.3ubuntu2) ... Setting up man-db (2.9.4-2build1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up gfortran (4:11.2.0-1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:armhf (1.16.0-5ubuntu2) ... Setting up dh-autoreconf (20) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libdist-checkconflicts-perl (0.11-1.1) ... Setting up libxt6:armhf (1:1.2.0-1build1) ... Setting up xauth (1:1.1-1build1) ... Setting up libxss1:armhf (1:1.2.3-1build1) ... Setting up libpangoft2-1.0-0:armhf (1.48.10+ds1-1) ... Setting up libpangocairo-1.0-0:armhf (1.48.10+ds1-1) ... Setting up libxft2:armhf (2.3.3-0ubuntu4) ... Setting up libmodule-implementation-perl (0.09-1.1) ... Setting up libpackage-stash-perl (0.39-1) ... Setting up libtk8.6:armhf (8.6.12-1) ... Setting up libwww-curl-perl (4.17-7build1) ... Setting up debhelper (13.5.2ubuntu1) ... Setting up libmodule-runtime-conflicts-perl (0.003-1.1) ... Setting up libclass-load-perl (0.25-1) ... Setting up r-base-core (4.1.2-1ubuntu1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.4.2-1) ... Setting up libpackage-deprecationmanager-perl (0.17-1.1) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-1build6) ... Setting up r-cran-r6 (2.5.1-1) ... Setting up r-cran-pkgkitten (0.2.2-2) ... Setting up libb-hooks-endofscope-perl (0.25-1) ... Setting up r-bioc-genomeinfodbdata (1.2.6-1) ... Setting up r-cran-littler (0.3.14-1) ... Setting up r-cran-rcpp (1.0.7-2) ... Setting up r-cran-curl (4.3.2+dfsg-1) ... Setting up r-bioc-biocgenerics (0.40.0-1) ... Setting up r-cran-rlang (0.4.12-2) ... Setting up r-base-dev (4.1.2-1ubuntu1) ... Setting up littler (0.3.14-1) ... Setting up r-cran-sys (3.4-1) ... Setting up r-cran-plogr (0.2.0-3build1) ... Setting up r-cran-mime (0.12-1) ... Setting up libmoose-perl:armhf (2.2200-1) ... Setting up r-cran-dbi (1.1.1-1) ... Setting up r-cran-glue (1.5.0-1) ... Setting up r-cran-bit (4.0.4+dfsg-1) ... Setting up r-cran-bitops (1.0-7-1) ... Setting up r-cran-bit64 (4.0.5-1) ... Setting up r-bioc-zlibbioc (1.40.0+dfsg-1) ... Setting up r-cran-askpass (1.1-2) ... Setting up r-cran-fastmap (1.1.0-1) ... Setting up r-cran-png (0.1-7-4) ... Setting up r-bioc-biobase (2.54.0-1) ... Setting up r-cran-jsonlite (1.7.2+dfsg-1) ... Setting up r-cran-pkgconfig (2.0.3-2build1) ... Setting up r-bioc-s4vectors (0.32.3-1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up r-cran-cachem (1.0.6-1) ... Setting up r-bioc-iranges (2.28.0-1) ... Setting up r-cran-rcurl (1.98-1.5-1) ... Setting up r-cran-ellipsis (0.3.2-2) ... Setting up r-cran-openssl (1.4.5+dfsg-1build1) ... Setting up libwww-curl-simple-perl (0.100191-2) ... Setting up r-bioc-genomeinfodb (1.30.0-1) ... Setting up r-cran-httr (1.4.2-1) ... Setting up r-cran-memoise (2.0.0-1) ... Setting up r-bioc-xvector (0.34.0-1) ... Setting up dh-r (20210218ubuntu1) ... Setting up r-cran-vctrs (0.3.8-1ubuntu1) ... Setting up r-bioc-biostrings (2.62.0-1) ... Setting up r-cran-blob (1.2.2-1) ... Setting up r-cran-rsqlite (2.2.8-1) ... Setting up r-bioc-keggrest (1.34.0+dfsg-1) ... Setting up r-bioc-annotationdbi (1.56.2-1) ... Setting up r-bioc-go.db (3.13.0-1) ... Setting up sbuild-build-depends-r-bioc-gosemsim-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.34-0ubuntu3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-162-generic arm64 (armv7l) Toolchain package versions: binutils_2.37-10ubuntu1 dpkg-dev_1.20.9ubuntu2 g++-11_11.2.0-12ubuntu1 gcc-11_11.2.0-12ubuntu1 libc6-dev_2.34-0ubuntu3 libstdc++-11-dev_11.2.0-12ubuntu1 libstdc++6_11.2.0-12ubuntu1 linux-libc-dev_5.15.0-12.12 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1ubuntu1 apt_2.3.13 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4ubuntu3 autotools-dev_20180224.1+nmu1 base-files_12ubuntu2 base-passwd_3.5.52 bash_5.1-3ubuntu2 binutils_2.37-10ubuntu1 binutils-arm-linux-gnueabihf_2.37-10ubuntu1 binutils-common_2.37-10ubuntu1 bsdextrautils_2.37.2-4ubuntu1 bsdutils_1:2.37.2-4ubuntu1 build-essential_12.9ubuntu2 bzip2_1.0.8-4ubuntu4 ca-certificates_20211016 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policyrcd-script-zg2_0.1-3 procps_2:3.3.17-5ubuntu3 r-base-core_4.1.2-1ubuntu1 r-base-dev_4.1.2-1ubuntu1 r-bioc-annotationdbi_1.56.2-1 r-bioc-biobase_2.54.0-1 r-bioc-biocgenerics_0.40.0-1 r-bioc-biostrings_2.62.0-1 r-bioc-genomeinfodb_1.30.0-1 r-bioc-genomeinfodbdata_1.2.6-1 r-bioc-go.db_3.13.0-1 r-bioc-iranges_2.28.0-1 r-bioc-keggrest_1.34.0+dfsg-1 r-bioc-s4vectors_0.32.3-1 r-bioc-xvector_0.34.0-1 r-bioc-zlibbioc_1.40.0+dfsg-1 r-cran-askpass_1.1-2 r-cran-bit_4.0.4+dfsg-1 r-cran-bit64_4.0.5-1 r-cran-bitops_1.0-7-1 r-cran-blob_1.2.2-1 r-cran-cachem_1.0.6-1 r-cran-crayon_1.4.2-1 r-cran-curl_4.3.2+dfsg-1 r-cran-dbi_1.1.1-1 r-cran-ellipsis_0.3.2-2 r-cran-fastmap_1.1.0-1 r-cran-glue_1.5.0-1 r-cran-httr_1.4.2-1 r-cran-jsonlite_1.7.2+dfsg-1 r-cran-littler_0.3.14-1 r-cran-memoise_2.0.0-1 r-cran-mime_0.12-1 r-cran-openssl_1.4.5+dfsg-1build1 r-cran-pkgconfig_2.0.3-2build1 r-cran-pkgkitten_0.2.2-2 r-cran-plogr_0.2.0-3build1 r-cran-png_0.1-7-4 r-cran-r6_2.5.1-1 r-cran-rcpp_1.0.7-2 r-cran-rcurl_1.98-1.5-1 r-cran-rlang_0.4.12-2 r-cran-rsqlite_2.2.8-1 r-cran-sys_3.4-1 r-cran-vctrs_0.3.8-1ubuntu1 readline-common_8.1-2build1 rpcsvc-proto_1.4.2-0ubuntu5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-gosemsim-dummy_0.invalid.0 sed_4.7-1ubuntu2 sensible-utils_0.0.17 systemd_248.3-1ubuntu8 systemd-sysv_248.3-1ubuntu8 systemd-timesyncd_248.3-1ubuntu8 sysvinit-utils_2.96-7ubuntu2 tar_1.34+dfsg-1build2 tzdata_2021e-1ubuntu1 ubuntu-keyring_2021.03.26 ucf_3.0043 unzip_6.0-26ubuntu2 usrmerge_25ubuntu2 util-linux_2.37.2-4ubuntu1 x11-common_1:7.7+23ubuntu1 xauth_1:1.1-1build1 xdg-utils_1.1.3-4.1ubuntu1 xz-utils_5.2.5-2build1 zip_3.0-12build1 zlib1g_1:1.2.11.dfsg-2ubuntu7 zlib1g-dev_1:1.2.11.dfsg-2ubuntu7 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu Nov 25 13:52:08 2021 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-bioc-gosemsim_2.20.0-1.dsc dpkg-source: info: extracting r-bioc-gosemsim in /<> dpkg-source: info: unpacking r-bioc-gosemsim_2.20.0.orig.tar.gz dpkg-source: info: unpacking r-bioc-gosemsim_2.20.0-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-22451846 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-22451846 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-22451846 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package r-bioc-gosemsim dpkg-buildpackage: info: source version 2.20.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary-arch dh binary-arch --buildsystem R dh_update_autotools_config -a -O--buildsystem=R dh_autoreconf -a -O--buildsystem=R dh_auto_configure -a -O--buildsystem=R dh_auto_build -a -O--buildsystem=R dh_auto_test -a -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=R dh_prep -a -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-gosemsim/ -a -O--buildsystem=R I: R Package: GOSemSim Version: 2.20.0 I: Building using R version 4.1.2-1ubuntu1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Thu, 25 Nov 2021 14:43:04 +0100 mkdir -p /<>/debian/r-bioc-gosemsim/usr/lib/R/site-library R CMD INSTALL -l /<>/debian/r-bioc-gosemsim/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 25 Nov 2021 14:43:04 +0100'" * installing *source* package ‘GOSemSim’ ... ** using staged installation ** libs make[1]: Entering directory '/<>/src' g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-0TAnD3/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ICmethod.cpp -o ICmethod.o In file included from /usr/include/c++/11/map:60, from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:57, from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27, from ICmethod.cpp:1: /usr/include/c++/11/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]’: /usr/include/c++/11/bits/stl_tree.h:2426:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 2426 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/map:61, from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:57, from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27, from ICmethod.cpp:1: /usr/include/c++/11/bits/stl_map.h: In function ‘Rcpp::NumericMatrix infoContentMethod_cpp(Rcpp::StringVector&, Rcpp::StringVector&, Rcpp::List&, Rcpp::NumericVector&, const string&, const string&)’: /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/11/bits/stl_map.h:520:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator’ changed in GCC 7.1 520 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 | std::tuple<>()); | ~~~~~~~~~~~~~~~ g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-0TAnD3/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++14 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o GOSemSim.so ICmethod.o RcppExports.o -L/usr/lib/R/lib -lR make[1]: Leaving directory '/<>/src' make[1]: Entering directory '/<>/src' make[1]: Leaving directory '/<>/src' installing to /<>/debian/r-bioc-gosemsim/usr/lib/R/site-library/00LOCK-r-bioc-gosemsim-2.20.0/00new/GOSemSim/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GOSemSim) Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 299. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 303. W: Ignoring specified R dependency: R (>= 3.5.0) I: Using r-bioc-annotationhub for Suggests:AnnotationHub I: Using r-cran-biocmanager for Suggests:BiocManager W: Cannot find a debian package for Suggests:clusterProfiler W: Cannot find a debian package for Suggests:DOSE I: Using r-cran-knitr for Suggests:knitr I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-bioc-org.hs.eg.db for Suggests:org.Hs.eg.db W: Cannot find a debian package for Suggests:prettydoc I: Using r-cran-testthat for Suggests:testthat I: Using r-cran-rocr for Suggests:ROCR I: Using r-bioc-annotationdbi for Imports:AnnotationDbi I: Using r-bioc-go.db for Imports:GO.db I: Using r-cran-rcpp for LinkingTo:Rcpp I: BioConductor API version: r-api-bioc-3.14 I: Use r-bioc-gosemsim as Debian binary package for variables substitution dh_installdocs -a -O--buildsystem=R dh_installchangelogs -a -O--buildsystem=R dh_installsystemduser -a -O--buildsystem=R dh_perl -a -O--buildsystem=R dh_link -a -O--buildsystem=R dh_strip_nondeterminism -a -O--buildsystem=R dh_compress -a -O--buildsystem=R dh_fixperms -a -O--buildsystem=R dh_missing -a -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R c31e35e014b03a73537545a33ffd3fa13b89f7e3 dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -a -O--buildsystem=R dh_gencontrol -a -O--buildsystem=R dh_md5sums -a -O--buildsystem=R dh_builddeb -a -O--buildsystem=R INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing r-bioc-gosemsim (in debian/r-bioc-gosemsim); do_strip: , oemstrip: pkgstriptranslations: processing r-bioc-gosemsim-dbgsym (in debian/.debhelper/r-bioc-gosemsim/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-bioc-gosemsim/DEBIAN/control, package r-bioc-gosemsim, directory debian/r-bioc-gosemsim pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-bioc-gosemsim ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-bioc-gosemsim' in '../r-bioc-gosemsim_2.20.0-1_armhf.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/r-bioc-gosemsim/dbgsym-root/DEBIAN/control, package r-bioc-gosemsim-dbgsym, directory debian/.debhelper/r-bioc-gosemsim/dbgsym-root dpkg-deb: building package 'r-bioc-gosemsim-dbgsym' in 'debian/.debhelper/scratch-space/build-r-bioc-gosemsim/r-bioc-gosemsim-dbgsym_2.20.0-1_armhf.deb'. Renaming r-bioc-gosemsim-dbgsym_2.20.0-1_armhf.deb to r-bioc-gosemsim-dbgsym_2.20.0-1_armhf.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../r-bioc-gosemsim_2.20.0-1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-11-26T06:35:02Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-bioc-gosemsim_2.20.0-1_armhf.changes: --------------------------------------- Format: 1.8 Date: Thu, 25 Nov 2021 14:43:04 +0100 Source: r-bioc-gosemsim Binary: r-bioc-gosemsim Built-For-Profiles: noudeb Architecture: armhf Version: 2.20.0-1 Distribution: jammy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: r-bioc-gosemsim - GO-terms semantic similarity measures Changes: r-bioc-gosemsim (2.20.0-1) unstable; urgency=medium . * Disable reprotest * New upstream version Checksums-Sha1: 5655a3e500fb85ade72da500901470f5b86758af 484772 r-bioc-gosemsim-dbgsym_2.20.0-1_armhf.ddeb 32c211e2c1f32e2729f10ab0e46992d2303f3fbb 12020 r-bioc-gosemsim_2.20.0-1_armhf.buildinfo 6a9dd3902d98745faccc52f8babacb3027e578f6 879170 r-bioc-gosemsim_2.20.0-1_armhf.deb Checksums-Sha256: 281491049831201903ff4bbe388038c73bdfad8259b4932083d66abb0b98d5b0 484772 r-bioc-gosemsim-dbgsym_2.20.0-1_armhf.ddeb 39f9ead417e69d593f3df26f0a9d330365ed9dd88d0a39506c5669d7ac636c74 12020 r-bioc-gosemsim_2.20.0-1_armhf.buildinfo e9bde2bc82d3f12121420da9a3061b1f89c7443b8004a0fd6d5f87246b6d2bbd 879170 r-bioc-gosemsim_2.20.0-1_armhf.deb Files: f5868afb02def528c54ba8221298dae3 484772 debug optional r-bioc-gosemsim-dbgsym_2.20.0-1_armhf.ddeb 09b9eaef709b9e97f14a59971aa06d02 12020 gnu-r optional r-bioc-gosemsim_2.20.0-1_armhf.buildinfo b60488a71e55bc01e427d9f9278c08a3 879170 gnu-r optional r-bioc-gosemsim_2.20.0-1_armhf.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: r-bioc-gosemsim Binary: r-bioc-gosemsim r-bioc-gosemsim-dbgsym Architecture: armhf Version: 2.20.0-1 Checksums-Md5: f5868afb02def528c54ba8221298dae3 484772 r-bioc-gosemsim-dbgsym_2.20.0-1_armhf.ddeb b60488a71e55bc01e427d9f9278c08a3 879170 r-bioc-gosemsim_2.20.0-1_armhf.deb Checksums-Sha1: 5655a3e500fb85ade72da500901470f5b86758af 484772 r-bioc-gosemsim-dbgsym_2.20.0-1_armhf.ddeb 6a9dd3902d98745faccc52f8babacb3027e578f6 879170 r-bioc-gosemsim_2.20.0-1_armhf.deb Checksums-Sha256: 281491049831201903ff4bbe388038c73bdfad8259b4932083d66abb0b98d5b0 484772 r-bioc-gosemsim-dbgsym_2.20.0-1_armhf.ddeb e9bde2bc82d3f12121420da9a3061b1f89c7443b8004a0fd6d5f87246b6d2bbd 879170 r-bioc-gosemsim_2.20.0-1_armhf.deb Build-Origin: Ubuntu Build-Architecture: armhf Build-Date: Fri, 26 Nov 2021 06:35:01 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.1), autopoint (= 0.21-4ubuntu3), autotools-dev (= 20180224.1+nmu1), base-files (= 12ubuntu2), base-passwd (= 3.5.52), bash (= 5.1-3ubuntu2), binutils (= 2.37-10ubuntu1), binutils-arm-linux-gnueabihf (= 2.37-10ubuntu1), binutils-common (= 2.37-10ubuntu1), bsdextrautils (= 2.37.2-4ubuntu1), bsdutils (= 1:2.37.2-4ubuntu1), build-essential (= 12.9ubuntu2), bzip2 (= 1.0.8-4ubuntu4), ca-certificates (= 20211016), coreutils (= 8.32-4ubuntu3), cpp (= 4:11.2.0-1ubuntu1), cpp-11 (= 11.2.0-12ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-3), dctrl-tools (= 2.24-3build1), debconf (= 1.5.79), debhelper (= 13.5.2ubuntu1), debianutils (= 5.5-1), debugedit (= 1:5.0-3), dh-autoreconf (= 20), dh-r (= 20210218ubuntu1), dh-strip-nondeterminism (= 1.12.1-1), diffutils (= 1:3.8-0ubuntu1), dpkg (= 1.20.9ubuntu2), dpkg-dev (= 1.20.9ubuntu2), dwz (= 0.14-1build1), file (= 1:5.41-2), findutils (= 4.8.0-1ubuntu2), fontconfig (= 2.13.1-4.2ubuntu4), fontconfig-config (= 2.13.1-4.2ubuntu4), fonts-dejavu-core (= 2.37-2build1), g++ (= 4:11.2.0-1ubuntu1), g++-11 (= 11.2.0-12ubuntu1), gcc (= 4:11.2.0-1ubuntu1), gcc-11 (= 11.2.0-12ubuntu1), gcc-11-base (= 11.2.0-12ubuntu1), gettext (= 0.21-4ubuntu3), gettext-base (= 0.21-4ubuntu3), gfortran (= 4:11.2.0-1ubuntu1), gfortran-11 (= 11.2.0-12ubuntu1), grep (= 3.7-1), groff-base (= 1.22.4-7), gzip (= 1.10-4ubuntu2), hostname (= 3.23ubuntu1), icu-devtools (= 67.1-7ubuntu1), init-system-helpers (= 1.60build1), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-10ubuntu2), libalgorithm-c3-perl (= 0.11-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.2.0-12ubuntu1), libatomic1 (= 11.2.0-12ubuntu1), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0-2ubuntu3), libaudit1 (= 1:3.0-2ubuntu3), libb-hooks-endofscope-perl (= 0.25-1), libb-hooks-op-check-perl (= 0.22-1build4), libbinutils (= 2.37-10ubuntu1), libblas-dev (= 3.9.0-3ubuntu3), libblas3 (= 3.9.0-3ubuntu3), libblkid1 (= 2.37.2-4ubuntu1), libbrotli1 (= 1.0.9-2build4), libbsd0 (= 0.11.3-1ubuntu3), libbz2-1.0 (= 1.0.8-4ubuntu4), libbz2-dev (= 1.0.8-4ubuntu4), libc-bin (= 2.34-0ubuntu3), libc-dev-bin (= 2.34-0ubuntu3), libc6 (= 2.34-0ubuntu3), libc6-dev (= 2.34-0ubuntu3), libcairo2 (= 1.16.0-5ubuntu2), libcap-ng0 (= 0.7.9-2.2build2), libcap2 (= 1:2.44-1build2), libcc1-0 (= 11.2.0-12ubuntu1), libclass-c3-perl (= 0.35-1), libclass-load-perl (= 0.25-1), libclass-load-xs-perl (= 0.10-1build6), libcom-err2 (= 1.46.4-1ubuntu1), libcrypt-dev (= 1:4.4.26-1), libcrypt1 (= 1:4.4.26-1), libctf-nobfd0 (= 2.37-10ubuntu1), libctf0 (= 2.37-10ubuntu1), libcurl3-gnutls (= 7.74.0-1.3ubuntu2), libcurl4 (= 7.74.0-1.3ubuntu2), libdata-optlist-perl (= 0.112-1), libdatrie1 (= 0.2.13-1ubuntu3), libdb5.3 (= 5.3.28+dfsg1-0.8ubuntu2), libdebconfclient0 (= 0.256ubuntu4), libdebhelper-perl (= 13.5.2ubuntu1), libdeflate0 (= 1.8-1ubuntu1), libdevel-callchecker-perl (= 0.008-1ubuntu3), libdevel-globaldestruction-perl (= 0.14-1.1), libdevel-overloadinfo-perl (= 0.007-1), libdevel-stacktrace-perl (= 2.0400-1), libdist-checkconflicts-perl (= 0.11-1.1), libdpkg-perl (= 1.20.9ubuntu2), libdw1 (= 0.186-1), libdynaloader-functions-perl (= 0.003-1.1), libelf1 (= 0.186-1), libencode-locale-perl (= 1.05-1.1), libeval-closure-perl (= 0.14-1), libexpat1 (= 2.4.1-3), libffi8 (= 3.4.2-1ubuntu5), libfile-stripnondeterminism-perl (= 1.12.1-1), libfile-which-perl (= 1.23-1), libfontconfig1 (= 2.13.1-4.2ubuntu4), libfreetype6 (= 2.11.0+dfsg-1), libfribidi0 (= 1.0.8-2ubuntu2), libgcc-11-dev (= 11.2.0-12ubuntu1), libgcc-s1 (= 11.2.0-12ubuntu1), libgcrypt20 (= 1.9.4-3ubuntu2), libgdbm-compat4 (= 1.22-1), libgdbm6 (= 1.22-1), libgfortran-11-dev (= 11.2.0-12ubuntu1), libgfortran5 (= 11.2.0-12ubuntu1), libglib2.0-0 (= 2.70.1-1), libgmp10 (= 2:6.2.1+dfsg-1ubuntu3), libgnutls30 (= 3.7.2-2ubuntu1), libgomp1 (= 11.2.0-12ubuntu1), libgpg-error0 (= 1.42-3), libgraphite2-3 (= 1.3.14-1build1), libgssapi-krb5-2 (= 1.18.3-7), libharfbuzz0b (= 2.7.4-1ubuntu2), libhogweed6 (= 3.7.3-1build1), libhttp-date-perl (= 6.05-1), libhttp-message-perl (= 6.35-1), libice6 (= 2:1.0.10-1build1), libicu-dev (= 67.1-7ubuntu1), libicu67 (= 67.1-7ubuntu1), libidn2-0 (= 2.3.2-2), libio-html-perl (= 1.004-2), libisl23 (= 0.24-2), libjbig0 (= 2.1-3.1build2), libjpeg-dev (= 8c-2ubuntu8), libjpeg-turbo8 (= 2.1.1-0ubuntu1), libjpeg-turbo8-dev (= 2.1.1-0ubuntu1), libjpeg8 (= 8c-2ubuntu8), libjpeg8-dev (= 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libpackage-deprecationmanager-perl (= 0.17-1.1), libpackage-stash-perl (= 0.39-1), libpackage-stash-xs-perl (= 0.29-1build4), libpam-modules (= 1.4.0-10ubuntu1), libpam-modules-bin (= 1.4.0-10ubuntu1), libpam-runtime (= 1.4.0-10ubuntu1), libpam0g (= 1.4.0-10ubuntu1), libpango-1.0-0 (= 1.48.10+ds1-1), libpangocairo-1.0-0 (= 1.48.10+ds1-1), libpangoft2-1.0-0 (= 1.48.10+ds1-1), libpaper-utils (= 1.1.28build1), libpaper1 (= 1.1.28build1), libparams-classify-perl (= 0.015-1build4), libparams-util-perl (= 1.102-1build2), libpcre16-3 (= 2:8.39-13build4), libpcre2-16-0 (= 10.39-3), libpcre2-32-0 (= 10.39-3), libpcre2-8-0 (= 10.39-3), libpcre2-dev (= 10.39-3), libpcre2-posix3 (= 10.39-3), libpcre3 (= 2:8.39-13build4), libpcre3-dev (= 2:8.39-13build4), libpcre32-3 (= 2:8.39-13build4), libpcrecpp0v5 (= 2:8.39-13build4), libperl5.32 (= 5.32.1-3ubuntu3), libpipeline1 (= 1.5.4-1), libpixman-1-0 (= 0.40.0-1build3), libpng-dev (= 1.6.37-3build4), libpng16-16 (= 1.6.37-3build4), libpsl5 (= 0.21.0-1.2build1), libreadline-dev (= 8.1-2build1), libreadline8 (= 8.1-2build1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build3), libsasl2-2 (= 2.1.27+dfsg2-2build1), libsasl2-modules-db (= 2.1.27+dfsg2-2build1), libscalar-list-utils-perl (= 1:1.59-1), libseccomp2 (= 2.5.2-2ubuntu2), libselinux1 (= 3.3-1), libsigsegv2 (= 2.13-1ubuntu2), libsm6 (= 2:1.2.3-1build1), libsmartcols1 (= 2.37.2-4ubuntu1), libssh-4 (= 0.9.6-1), libssl1.1 (= 1.1.1l-1ubuntu1), libssl3 (= 3.0.0-1ubuntu1), libstdc++-11-dev (= 11.2.0-12ubuntu1), libstdc++6 (= 11.2.0-12ubuntu1), libsub-exporter-perl (= 0.988-1), libsub-exporter-progressive-perl (= 0.001013-1), libsub-identify-perl (= 0.14-1build4), libsub-install-perl (= 0.928-1.1), libsub-name-perl (= 0.26-1build2), libsub-override-perl (= 0.09-2), libswitch-perl (= 2.17-2.1), libsystemd0 (= 248.3-1ubuntu8), libtasn1-6 (= 4.18.0-4), libtcl8.6 (= 8.6.12+dfsg-1), libthai-data (= 0.1.28-4.1), libthai0 (= 0.1.28-4.1), libtiff5 (= 4.3.0-2), libtimedate-perl (= 2.3300-2), libtinfo6 (= 6.3-1), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtk8.6 (= 8.6.12-1), libtool (= 2.4.6-15build1), libtry-tiny-perl (= 0.30-1), libubsan1 (= 11.2.0-12ubuntu1), libuchardet0 (= 0.0.7-1build1), libudev1 (= 248.3-1ubuntu8), libunistring2 (= 0.9.10-6), liburi-perl (= 5.10-1), libuuid1 (= 2.37.2-4ubuntu1), libvariable-magic-perl (= 0.62-1build4), libwebp6 (= 0.6.1-2.1build1), libwww-curl-perl (= 4.17-7build1), libwww-curl-simple-perl (= 0.100191-2), libx11-6 (= 2:1.7.2-2), libx11-data (= 2:1.7.2-2), libxau6 (= 1:1.0.9-1build4), libxcb-render0 (= 1.14-3ubuntu2), libxcb-shm0 (= 1.14-3ubuntu2), libxcb1 (= 1.14-3ubuntu2), libxdmcp6 (= 1:1.1.3-0ubuntu4), libxext6 (= 2:1.3.4-1), libxft2 (= 2.3.3-0ubuntu4), libxml2 (= 2.9.12+dfsg-5), libxmuu1 (= 2:1.1.3-0ubuntu2), libxrender1 (= 1:0.9.10-1build3), libxss1 (= 1:1.2.3-1build1), libxt6 (= 1:1.2.0-1build1), libzstd1 (= 1.4.8+dfsg-3), linux-libc-dev (= 5.15.0-12.12), littler (= 0.3.14-1), login (= 1:4.8.1-1ubuntu10), lsb-base (= 11.1.0ubuntu3), lto-disabled-list (= 16), m4 (= 1.4.18-5ubuntu1), make (= 4.3-4ubuntu2), man-db (= 2.9.4-2build1), mawk (= 1.3.4.20200120-2build1), ncurses-base (= 6.3-1), ncurses-bin (= 6.3-1), openssl (= 3.0.0-1ubuntu1), patch (= 2.7.6-7build1), perl (= 5.32.1-3ubuntu3), perl-base (= 5.32.1-3ubuntu3), perl-modules-5.32 (= 5.32.1-3ubuntu3), pkg-config (= 0.29.2-1ubuntu2), po-debconf (= 1.0.21+nmu1), r-base-core (= 4.1.2-1ubuntu1), r-base-dev (= 4.1.2-1ubuntu1), r-bioc-annotationdbi (= 1.56.2-1), r-bioc-biobase (= 2.54.0-1), r-bioc-biocgenerics (= 0.40.0-1), r-bioc-biostrings (= 2.62.0-1), r-bioc-genomeinfodb (= 1.30.0-1), r-bioc-genomeinfodbdata (= 1.2.6-1), r-bioc-go.db (= 3.13.0-1), r-bioc-iranges (= 2.28.0-1), r-bioc-keggrest (= 1.34.0+dfsg-1), r-bioc-s4vectors (= 0.32.3-1), r-bioc-xvector (= 0.34.0-1), r-bioc-zlibbioc (= 1.40.0+dfsg-1), r-cran-askpass (= 1.1-2), r-cran-bit (= 4.0.4+dfsg-1), r-cran-bit64 (= 4.0.5-1), r-cran-bitops (= 1.0-7-1), r-cran-blob (= 1.2.2-1), r-cran-cachem (= 1.0.6-1), r-cran-crayon (= 1.4.2-1), r-cran-curl (= 4.3.2+dfsg-1), r-cran-dbi (= 1.1.1-1), r-cran-ellipsis (= 0.3.2-2), r-cran-fastmap (= 1.1.0-1), r-cran-glue (= 1.5.0-1), r-cran-httr (= 1.4.2-1), r-cran-jsonlite (= 1.7.2+dfsg-1), r-cran-littler (= 0.3.14-1), r-cran-memoise (= 2.0.0-1), r-cran-mime (= 0.12-1), r-cran-openssl (= 1.4.5+dfsg-1build1), r-cran-pkgconfig (= 2.0.3-2build1), r-cran-pkgkitten (= 0.2.2-2), r-cran-plogr (= 0.2.0-3build1), r-cran-png (= 0.1-7-4), r-cran-r6 (= 2.5.1-1), r-cran-rcpp (= 1.0.7-2), r-cran-rcurl (= 1.98-1.5-1), r-cran-rlang (= 0.4.12-2), r-cran-rsqlite (= 2.2.8-1), r-cran-sys (= 3.4-1), r-cran-vctrs (= 0.3.8-1ubuntu1), readline-common (= 8.1-2build1), rpcsvc-proto (= 1.4.2-0ubuntu5), sed (= 4.7-1ubuntu2), sensible-utils (= 0.0.17), sysvinit-utils (= 2.96-7ubuntu2), tar (= 1.34+dfsg-1build2), tzdata (= 2021e-1ubuntu1), ucf (= 3.0043), unzip (= 6.0-26ubuntu2), util-linux (= 2.37.2-4ubuntu1), x11-common (= 1:7.7+23ubuntu1), xauth (= 1:1.1-1build1), xdg-utils (= 1.1.3-4.1ubuntu1), xz-utils (= 5.2.5-2build1), zip (= 3.0-12build1), zlib1g (= 1:1.2.11.dfsg-2ubuntu7), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu7) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1637847784" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-bioc-gosemsim_2.20.0-1_armhf.deb ---------------------------------- new Debian package, version 2.0. size 879170 bytes: control archive=1760 bytes. 1141 bytes, 18 lines control 2563 bytes, 32 lines md5sums Package: r-bioc-gosemsim Version: 2.20.0-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian R Packages Maintainers Installed-Size: 1008 Depends: r-base-core (>= 4.1.2-1ubuntu1), r-api-4.0, r-api-bioc-3.14, r-bioc-annotationdbi, r-bioc-go.db, r-cran-rcpp, libc6 (>= 2.29), libgcc-s1 (>= 3.5), libstdc++6 (>= 5.2) Suggests: r-bioc-annotationhub, r-cran-biocmanager, r-cran-knitr, r-cran-rmarkdown, r-bioc-org.hs.eg.db, r-cran-testthat, r-cran-rocr Section: gnu-r Priority: optional Homepage: https://bioconductor.org/packages/GOSemSim/ Description: GO-terms semantic similarity measures The semantic comparisons of Gene Ontology (GO) annotations provide quantitative ways to compute similarities between genes and gene groups, and have became important basis for many bioinformatics analysis approaches. GOSemSim is an R package for semantic similarity computation among GO terms, sets of GO terms, gene products and gene clusters. 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./usr/share/doc/r-bioc-gosemsim/changelog.Debian.gz -rw-r--r-- root/root 9686 2021-11-25 13:43 ./usr/share/doc/r-bioc-gosemsim/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: any Build-Space: n/a Build-Time: 66 Distribution: jammy-proposed Host Architecture: armhf Install-Time: 35 Job: r-bioc-gosemsim_2.20.0-1.dsc Machine Architecture: arm64 Package: r-bioc-gosemsim Package-Time: 102 Source-Version: 2.20.0-1 Space: n/a Status: successful Version: 2.20.0-1 -------------------------------------------------------------------------------- Finished at 2021-11-26T06:35:02Z Build needed 00:01:42, no disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=jammy --arch=armhf PACKAGEBUILD-22451846 Scanning for processes to kill in build PACKAGEBUILD-22451846