RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux magic 3.8.0-mustang_sw_1.07.04-Alpha #1 SMP Sat Sep 14 09:50:58 MDT 2013 aarch64 Buildd toolchain package versions: launchpad-buildd_119~APM.12.04.2 python-lpbuildd_119~APM.12.04.2. Syncing the system clock with the buildd NTP service... 23 Oct 02:24:04 ntpdate[19909]: adjust time server 10.211.37.1 offset -0.088222 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-5144998', '/home/buildd/filecache-default/b26b22d5e9534fc8f0f6f99171885be7b2b8539d'] Unpacking chroot for build PACKAGEBUILD-5144998 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-5144998'] Mounting chroot for build PACKAGEBUILD-5144998 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-5144998', 'deb http://ftpmaster.internal/ubuntu trusty main universe', 'deb http://ftpmaster.internal/ubuntu trusty-security main universe', 'deb http://ftpmaster.internal/ubuntu trusty-updates main universe', 'deb http://ftpmaster.internal/ubuntu trusty-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-5144998 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-5144998', 'arm64'] Updating debian chroot for build PACKAGEBUILD-5144998 Ign http://ftpmaster.internal trusty InRelease Ign http://archive-team.internal trusty InRelease Ign http://ftpmaster.internal trusty-security InRelease Ign http://archive-team.internal trusty Release.gpg Ign http://ftpmaster.internal trusty-updates InRelease Hit http://archive-team.internal trusty Release Ign http://ftpmaster.internal trusty-proposed InRelease Ign http://archive-team.internal trusty/main arm64 Packages/DiffIndex Get:1 http://ftpmaster.internal trusty Release.gpg [933 B] Get:2 http://ftpmaster.internal trusty-security Release.gpg [933 B] Get:3 http://ftpmaster.internal trusty-updates Release.gpg [933 B] Get:4 http://ftpmaster.internal trusty-proposed Release.gpg [933 B] Get:5 http://ftpmaster.internal trusty Release [49.6 kB] Get:6 http://ftpmaster.internal trusty-security Release [49.6 kB] Ign http://archive-team.internal trusty/main Translation-en Hit http://archive-team.internal trusty/main arm64 Packages Get:7 http://ftpmaster.internal trusty-updates Release [49.6 kB] Get:8 http://ftpmaster.internal trusty-proposed Release [49.6 kB] Get:9 http://ftpmaster.internal trusty/main arm64 Packages [1157 kB] Get:10 http://ftpmaster.internal trusty/universe arm64 Packages [3928 kB] Get:11 http://ftpmaster.internal trusty/main Translation-en [722 kB] Get:12 http://ftpmaster.internal trusty/universe Translation-en [3912 kB] Get:13 http://ftpmaster.internal trusty-security/main arm64 Packages [14 B] Get:14 http://ftpmaster.internal trusty-security/universe arm64 Packages [14 B] Get:15 http://ftpmaster.internal trusty-security/main Translation-en [14 B] Get:16 http://ftpmaster.internal trusty-security/universe Translation-en [14 B] Get:17 http://ftpmaster.internal trusty-updates/main arm64 Packages [14 B] Get:18 http://ftpmaster.internal trusty-updates/universe arm64 Packages [14 B] Get:19 http://ftpmaster.internal trusty-updates/main Translation-en [14 B] Get:20 http://ftpmaster.internal trusty-updates/universe Translation-en [14 B] Get:21 http://ftpmaster.internal trusty-proposed/main arm64 Packages [69.5 kB] Get:22 http://ftpmaster.internal trusty-proposed/universe arm64 Packages [320 kB] Get:23 http://ftpmaster.internal trusty-proposed/main Translation-en [48.8 kB] Get:24 http://ftpmaster.internal trusty-proposed/universe Translation-en [391 kB] Fetched 10.8 MB in 15s (676 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: busybox-initramfs libldap-2.4-2 libmpfr4 libsqlite3-0 perl perl-base perl-modules tar 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 10.4 MB of archives. After this operation, 2433 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! perl perl-base perl-modules tar libsqlite3-0 libldap-2.4-2 libmpfr4 busybox-initramfs Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ trusty-proposed/main perl arm64 5.18.1-4 [3937 kB] Get:2 http://ftpmaster.internal/ubuntu/ trusty-proposed/main perl-base arm64 5.18.1-4 [1473 kB] Get:3 http://ftpmaster.internal/ubuntu/ trusty-proposed/main perl-modules all 5.18.1-4 [3926 kB] Get:4 http://ftpmaster.internal/ubuntu/ trusty-proposed/main tar arm64 1.27-1 [213 kB] Get:5 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libsqlite3-0 arm64 3.8.0.2-1ubuntu1 [346 kB] Get:6 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libldap-2.4-2 arm64 2.4.31-1+nmu2ubuntu4 [159 kB] Get:7 http://ftpmaster.internal/ubuntu/ trusty/main libmpfr4 arm64 3.1.2-1 [207 kB] Get:8 http://ftpmaster.internal/ubuntu/ trusty/main busybox-initramfs arm64 1:1.20.0-9ubuntu2 [186 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 10.4 MB in 13s (766 kB/s) (Reading database ... 11942 files and directories currently installed.) Preparing to replace perl 5.14.2-21build1 (using .../perl_5.18.1-4_arm64.deb) ... Unpacking replacement perl ... Preparing to replace perl-base 5.14.2-21build1 (using .../perl-base_5.18.1-4_arm64.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.18.1-4) ... (Reading database ... 11844 files and directories currently installed.) Preparing to replace perl-modules 5.14.2-21build1 (using .../perl-modules_5.18.1-4_all.deb) ... Unpacking replacement perl-modules ... Preparing to replace tar 1.26+dfsg-8 (using .../archives/tar_1.27-1_arm64.deb) ... Unpacking replacement tar ... Setting up tar (1.27-1) ... (Reading database ... 11882 files and directories currently installed.) Preparing to replace libsqlite3-0:arm64 3.7.17-1ubuntu1 (using .../libsqlite3-0_3.8.0.2-1ubuntu1_arm64.deb) ... Unpacking replacement libsqlite3-0:arm64 ... Preparing to replace libldap-2.4-2:arm64 2.4.31-1+nmu2ubuntu3 (using .../libldap-2.4-2_2.4.31-1+nmu2ubuntu4_arm64.deb) ... Unpacking replacement libldap-2.4-2:arm64 ... Preparing to replace libmpfr4:arm64 3.1.1-2 (using .../libmpfr4_3.1.2-1_arm64.deb) ... Unpacking replacement libmpfr4:arm64 ... Preparing to replace busybox-initramfs 1:1.20.0-9ubuntu1 (using .../busybox-initramfs_1%3a1.20.0-9ubuntu2_arm64.deb) ... Unpacking replacement busybox-initramfs ... Setting up libsqlite3-0:arm64 (3.8.0.2-1ubuntu1) ... Setting up libldap-2.4-2:arm64 (2.4.31-1+nmu2ubuntu4) ... Setting up libmpfr4:arm64 (3.1.2-1) ... Setting up busybox-initramfs (1:1.20.0-9ubuntu2) ... Setting up perl-modules (5.18.1-4) ... Setting up perl (5.18.1-4) ... Processing triggers for libc-bin ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-5144998', 'arm64', 'trusty-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=trusty-proposed', '--purpose=PRIMARY', '--architecture=arm64', '--comp=universe', 'r-bioc-graph_1.38.3-1.dsc'] Initiating build PACKAGEBUILD-5144998 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 3.8.0-mustang_sw_1.07.04-Alpha #1 SMP Sat Sep 14 09:50:58 MDT 2013 aarch64 Automatic build of r-bioc-graph_1.38.3-1 on magic by sbuild/arm64 1.170.5 Build started at 20131023-0224 ****************************************************************************** r-bioc-graph_1.38.3-1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 9), cdbs, r-base-dev, r-bioc-biocgenerics Checking for already installed source dependencies... debhelper: missing cdbs: missing r-base-dev: missing r-bioc-biocgenerics: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper cdbs r-base-dev r-bioc-biocgenerics Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: apparmor-easyprof autoconf automake autotools-dev bsdmainutils ca-certificates dh-apparmor dh-python dh-translations file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-4.8 groff-base intltool intltool-debian libasprintf0c2 libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libencode-locale-perl libexpat1 libffi6 libfile-listing-perl libfontconfig1 libfreetype6 libgfortran-4.8-dev libgfortran3 libglib2.0-0 libgraphite2-3 libharfbuzz0a libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libio-html-perl libio-socket-ssl-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libncurses5-dev libnet-http-perl libnet-ssleay-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-dev libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libreadline-dev libreadline6-dev libsigsegv2 libsm6 libssl1.0.0 libthai-data libthai0 libtiff5 libtinfo-dev libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2 libxrender1 libxss1 libxt6 m4 man-db mime-support netbase openssl po-debconf python python-minimal python-scour python2.7 python2.7-minimal python3 python3-minimal python3.3 python3.3-minimal r-base-core tcl8.5 tcl8.5-lib tk8.5 tk8.5-lib ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev Suggested packages: autoconf2.13 autoconf-archive gnu-standards autoconf-doc libtool wamerican wordlist whois vacation devscripts dh-make gettext-doc gfortran-doc gfortran-4.8-doc libgfortran3-dbg groff libdata-dump-perl libcrypt-ssleay-perl ncurses-doc ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp libauthen-ntlm-perl less www-browser libmail-box-perl python-doc python-tk python-rsvg python-cairo python2.7-doc binfmt-support python3-doc python3-tk python3.3-doc r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo texi2html tcl-tclreadline gvfs-bin Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info libhtml-format-perl libio-socket-inet6-perl libio-socket-ip-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl xml-core libmail-sendmail-perl r-recommended r-doc-html xterm x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils The following NEW packages will be installed: apparmor-easyprof autoconf automake autotools-dev bsdmainutils ca-certificates cdbs debhelper dh-apparmor dh-python dh-translations file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-4.8 groff-base intltool intltool-debian libasprintf0c2 libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libencode-locale-perl libexpat1 libffi6 libfile-listing-perl libfontconfig1 libfreetype6 libgfortran-4.8-dev libgfortran3 libglib2.0-0 libgraphite2-3 libharfbuzz0a libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libio-html-perl libio-socket-ssl-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libncurses5-dev libnet-http-perl libnet-ssleay-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-dev libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libreadline-dev libreadline6-dev libsigsegv2 libsm6 libssl1.0.0 libthai-data libthai0 libtiff5 libtinfo-dev libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2 libxrender1 libxss1 libxt6 m4 man-db mime-support netbase openssl po-debconf python python-minimal python-scour python2.7 python2.7-minimal python3 python3-minimal python3.3 python3.3-minimal r-base-core r-base-dev r-bioc-biocgenerics tcl8.5 tcl8.5-lib tk8.5 tk8.5-lib ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev 0 upgraded, 136 newly installed, 0 to remove and 0 not upgraded. Need to get 61.0 MB of archives. After this operation, 156 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libexpat1 libffi6 libmagic1 libssl1.0.0 libpython3.3-minimal mime-support libpython3.3-stdlib python3.3-minimal libasprintf0c2 libglib2.0-0 libpipeline1 libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxext6 libxml2 groff-base bsdmainutils man-db ucf fonts-dejavu-core ttf-dejavu-core fontconfig-config libfreetype6 libfontconfig1 libpixman-1-0 libxcb-render0 libxcb-shm0 libxrender1 libcairo2 libcroco3 libdatrie1 libgfortran3 libgraphite2-3 libharfbuzz0a x11-common libice6 libjpeg-turbo8 libthai-data libthai0 fontconfig libpango-1.0-0 libpangoft2-1.0-0 libpangocairo-1.0-0 libpaper1 libpcrecpp0 libsigsegv2 libsm6 libjbig0 libjpeg8 libtiff5 libunistring0 libxft2 libxss1 libxt6 libpython2.7-minimal python2.7-minimal tcl8.5-lib tk8.5-lib python3.3 python3-minimal libpython3-stdlib python3 dh-python file netbase openssl ca-certificates gettext-base m4 autoconf autotools-dev automake gettext intltool-debian po-debconf apparmor-easyprof dh-apparmor debhelper liburi-perl libencode-locale-perl libhttp-date-perl libfile-listing-perl libhtml-tagset-perl libhtml-parser-perl libhtml-tree-perl libio-html-perl liblwp-mediatypes-perl libhttp-message-perl libhttp-cookies-perl libhttp-negotiate-perl libnet-ssleay-perl libio-socket-ssl-perl libnet-http-perl liblwp-protocol-https-perl libwww-robotrules-perl libwww-perl libxml-parser-perl intltool dh-translations libpython2.7-stdlib python2.7 python-minimal libpython-stdlib python python-scour cdbs libgfortran-4.8-dev gfortran-4.8 gfortran libblas3 libblas-dev libbz2-dev libjpeg-turbo8-dev libjpeg8-dev libjpeg-dev liblapack3 liblapack-dev libtinfo-dev libncurses5-dev libpaper-utils libpcre3-dev zlib1g-dev libpng12-dev libreadline6-dev libreadline-dev zip unzip xdg-utils tcl8.5 tk8.5 r-base-core r-base-dev r-bioc-biocgenerics Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ trusty/main libexpat1 arm64 2.1.0-4 [114 kB] Get:2 http://ftpmaster.internal/ubuntu/ trusty/main libffi6 arm64 3.0.13-4 [19.0 kB] Get:3 http://ftpmaster.internal/ubuntu/ trusty/main libmagic1 arm64 5.11-2ubuntu4 [163 kB] Get:4 http://ftpmaster.internal/ubuntu/ trusty/main libssl1.0.0 arm64 1.0.1e-3ubuntu1 [860 kB] Get:5 http://ftpmaster.internal/ubuntu/ trusty/main libpython3.3-minimal arm64 3.3.2-7ubuntu3 [609 kB] Get:6 http://ftpmaster.internal/ubuntu/ trusty/main mime-support all 3.54ubuntu1 [31.7 kB] Get:7 http://ftpmaster.internal/ubuntu/ trusty/main libpython3.3-stdlib arm64 3.3.2-7ubuntu3 [2568 kB] Get:8 http://ftpmaster.internal/ubuntu/ trusty/main python3.3-minimal arm64 3.3.2-7ubuntu3 [1431 kB] Get:9 http://ftpmaster.internal/ubuntu/ trusty/main libasprintf0c2 arm64 0.18.3.1-1ubuntu1 [7172 B] Get:10 http://ftpmaster.internal/ubuntu/ trusty/main libglib2.0-0 arm64 2.38.1-1 [827 kB] Get:11 http://ftpmaster.internal/ubuntu/ trusty/main libpipeline1 arm64 1.2.4-1 [24.5 kB] Get:12 http://ftpmaster.internal/ubuntu/ trusty/main libxau6 arm64 1:1.0.8-1 [7590 B] Get:13 http://ftpmaster.internal/ubuntu/ trusty/main libxdmcp6 arm64 1:1.1.1-1 [11.7 kB] Get:14 http://ftpmaster.internal/ubuntu/ trusty/main libxcb1 arm64 1.9.1-3ubuntu1 [35.4 kB] Get:15 http://ftpmaster.internal/ubuntu/ trusty/main libx11-data all 2:1.6.1-1ubuntu1 [181 kB] Get:16 http://ftpmaster.internal/ubuntu/ trusty/main libx11-6 arm64 2:1.6.1-1ubuntu1 [709 kB] Get:17 http://ftpmaster.internal/ubuntu/ trusty/main libxext6 arm64 2:1.3.2-1 [28.8 kB] Get:18 http://ftpmaster.internal/ubuntu/ trusty/main libxml2 arm64 2.9.1+dfsg1-3ubuntu2 [588 kB] Get:19 http://ftpmaster.internal/ubuntu/ trusty/main groff-base arm64 1.22.2-3 [688 kB] Get:20 http://ftpmaster.internal/ubuntu/ trusty/main bsdmainutils arm64 9.0.5ubuntu1 [199 kB] Get:21 http://ftpmaster.internal/ubuntu/ trusty/main man-db arm64 2.6.5-2 [678 kB] Get:22 http://ftpmaster.internal/ubuntu/ trusty/main ucf all 3.0027+nmu1 [56.3 kB] Get:23 http://ftpmaster.internal/ubuntu/ trusty/main fonts-dejavu-core all 2.33+svn2514-3ubuntu1 [1019 kB] Get:24 http://ftpmaster.internal/ubuntu/ trusty/main ttf-dejavu-core all 2.33+svn2514-3ubuntu1 [2964 B] Get:25 http://ftpmaster.internal/ubuntu/ trusty/main fontconfig-config all 2.10.93-0ubuntu1 [50.5 kB] Get:26 http://ftpmaster.internal/ubuntu/ trusty/main libfreetype6 arm64 2.4.12-0ubuntu1 [313 kB] Get:27 http://ftpmaster.internal/ubuntu/ trusty/main libfontconfig1 arm64 2.10.93-0ubuntu1 [128 kB] Get:28 http://ftpmaster.internal/ubuntu/ trusty/main libpixman-1-0 arm64 0.30.2-1 [151 kB] Get:29 http://ftpmaster.internal/ubuntu/ trusty/main libxcb-render0 arm64 1.9.1-3ubuntu1 [10.9 kB] Get:30 http://ftpmaster.internal/ubuntu/ trusty/main libxcb-shm0 arm64 1.9.1-3ubuntu1 [5252 B] Get:31 http://ftpmaster.internal/ubuntu/ trusty/main libxrender1 arm64 1:0.9.8-1 [18.2 kB] Get:32 http://ftpmaster.internal/ubuntu/ trusty/main libcairo2 arm64 1.12.16-0ubuntu2 [545 kB] Get:33 http://ftpmaster.internal/ubuntu/ trusty/main libcroco3 arm64 0.6.8-2 [64.9 kB] Get:34 http://ftpmaster.internal/ubuntu/ trusty/main libdatrie1 arm64 0.2.7.1-1 [13.6 kB] Get:35 http://ftpmaster.internal/ubuntu/ trusty/main libgfortran3 arm64 4.8.2-1ubuntu2 [262 kB] Get:36 http://ftpmaster.internal/ubuntu/ trusty/main libgraphite2-3 arm64 1.2.3-1 [50.1 kB] Get:37 http://ftpmaster.internal/ubuntu/ trusty/main libharfbuzz0a arm64 0.9.19-1 [128 kB] Get:38 http://ftpmaster.internal/ubuntu/ trusty/main x11-common all 1:7.7+1ubuntu6 [58.6 kB] Get:39 http://ftpmaster.internal/ubuntu/ trusty/main libice6 arm64 2:1.0.8-2 [40.0 kB] Get:40 http://ftpmaster.internal/ubuntu/ trusty/main libjpeg-turbo8 arm64 1.3.0-0ubuntu1 [101 kB] Get:41 http://ftpmaster.internal/ubuntu/ trusty/main libthai-data all 0.1.19-2 [130 kB] Get:42 http://ftpmaster.internal/ubuntu/ trusty/main libthai0 arm64 0.1.19-2 [14.4 kB] Get:43 http://ftpmaster.internal/ubuntu/ trusty/main fontconfig arm64 2.10.93-0ubuntu1 [182 kB] Get:44 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libpango-1.0-0 arm64 1.36.0-1ubuntu1 [130 kB] Get:45 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libpangoft2-1.0-0 arm64 1.36.0-1ubuntu1 [26.0 kB] Get:46 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libpangocairo-1.0-0 arm64 1.36.0-1ubuntu1 [15.8 kB] Get:47 http://ftpmaster.internal/ubuntu/ trusty/main libpaper1 arm64 1.1.24+nmu2ubuntu2 [13.8 kB] Get:48 http://ftpmaster.internal/ubuntu/ trusty/main libpcrecpp0 arm64 1:8.31-2 [15.8 kB] Get:49 http://ftpmaster.internal/ubuntu/ trusty/main libsigsegv2 arm64 2.10-2 [14.0 kB] Get:50 http://ftpmaster.internal/ubuntu/ trusty/main libsm6 arm64 2:1.2.1-2 [15.9 kB] Get:51 http://ftpmaster.internal/ubuntu/ trusty/main libjbig0 arm64 2.0-2ubuntu1 [26.6 kB] Get:52 http://ftpmaster.internal/ubuntu/ trusty/main libjpeg8 arm64 8c-2ubuntu8 [2198 B] Get:53 http://ftpmaster.internal/ubuntu/ trusty/main libtiff5 arm64 4.0.2-4ubuntu3 [149 kB] Get:54 http://ftpmaster.internal/ubuntu/ trusty/main libunistring0 arm64 0.9.3-5ubuntu1 [403 kB] Get:55 http://ftpmaster.internal/ubuntu/ trusty/main libxft2 arm64 2.3.1-1 [37.2 kB] Get:56 http://ftpmaster.internal/ubuntu/ trusty/main libxss1 arm64 1:1.2.2-1 [7968 B] Get:57 http://ftpmaster.internal/ubuntu/ trusty/main libxt6 arm64 1:1.1.4-1 [156 kB] Get:58 http://ftpmaster.internal/ubuntu/ trusty/main libpython2.7-minimal arm64 2.7.5-8ubuntu3 [499 kB] Get:59 http://ftpmaster.internal/ubuntu/ trusty/main python2.7-minimal arm64 2.7.5-8ubuntu3 [1192 kB] Get:60 http://ftpmaster.internal/ubuntu/ trusty/main tcl8.5-lib arm64 8.5.13-1ubuntu4 [466 kB] Get:61 http://ftpmaster.internal/ubuntu/ trusty/main tk8.5-lib arm64 8.5.11-2ubuntu4 [493 kB] Get:62 http://ftpmaster.internal/ubuntu/ trusty/main python3.3 arm64 3.3.2-7ubuntu3 [129 kB] Get:63 http://ftpmaster.internal/ubuntu/ trusty/main python3-minimal arm64 3.3.2-14ubuntu1 [26.4 kB] Get:64 http://ftpmaster.internal/ubuntu/ trusty/main libpython3-stdlib arm64 3.3.2-14ubuntu1 [8144 B] Get:65 http://ftpmaster.internal/ubuntu/ trusty/main python3 arm64 3.3.2-14ubuntu1 [9144 B] Get:66 http://ftpmaster.internal/ubuntu/ trusty-proposed/main dh-python all 1.20131021-1 [62.1 kB] Get:67 http://ftpmaster.internal/ubuntu/ trusty/main file arm64 5.11-2ubuntu4 [18.2 kB] Get:68 http://ftpmaster.internal/ubuntu/ trusty/main netbase all 5.1 [13.9 kB] Get:69 http://ftpmaster.internal/ubuntu/ trusty/main openssl arm64 1.0.1e-3ubuntu1 [519 kB] Get:70 http://ftpmaster.internal/ubuntu/ trusty/main ca-certificates all 20130906 [196 kB] Get:71 http://ftpmaster.internal/ubuntu/ trusty/main gettext-base arm64 0.18.3.1-1ubuntu1 [64.0 kB] Get:72 http://ftpmaster.internal/ubuntu/ trusty/main m4 arm64 1.4.17-1 [195 kB] Get:73 http://ftpmaster.internal/ubuntu/ trusty/main autoconf all 2.69-1.1 [573 kB] Get:74 http://ftpmaster.internal/ubuntu/ trusty/main autotools-dev all 20130810.1 [44.3 kB] Get:75 http://ftpmaster.internal/ubuntu/ trusty/main automake all 1:1.13.3-1.1ubuntu2 [573 kB] Get:76 http://ftpmaster.internal/ubuntu/ trusty/main gettext arm64 0.18.3.1-1ubuntu1 [983 kB] Get:77 http://ftpmaster.internal/ubuntu/ trusty/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:78 http://ftpmaster.internal/ubuntu/ trusty/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:79 http://ftpmaster.internal/ubuntu/ trusty-proposed/main apparmor-easyprof all 2.8.0-0ubuntu32 [23.3 kB] Get:80 http://ftpmaster.internal/ubuntu/ trusty-proposed/main dh-apparmor all 2.8.0-0ubuntu32 [7830 B] Get:81 http://ftpmaster.internal/ubuntu/ trusty/main debhelper all 9.20130921ubuntu1 [635 kB] Get:82 http://ftpmaster.internal/ubuntu/ trusty/main liburi-perl all 1.60-1 [89.6 kB] Get:83 http://ftpmaster.internal/ubuntu/ trusty/main libencode-locale-perl all 1.03-1 [12.4 kB] Get:84 http://ftpmaster.internal/ubuntu/ trusty/main libhttp-date-perl all 6.02-1 [10.4 kB] Get:85 http://ftpmaster.internal/ubuntu/ trusty/main libfile-listing-perl all 6.04-1 [9774 B] Get:86 http://ftpmaster.internal/ubuntu/ trusty/main libhtml-tagset-perl all 3.20-2 [13.5 kB] Get:87 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libhtml-parser-perl arm64 3.71-1build1 [95.7 kB] Get:88 http://ftpmaster.internal/ubuntu/ trusty/main libhtml-tree-perl all 5.03-1 [215 kB] Get:89 http://ftpmaster.internal/ubuntu/ trusty/main libio-html-perl all 1.00-1 [15.7 kB] Get:90 http://ftpmaster.internal/ubuntu/ trusty/main liblwp-mediatypes-perl all 6.02-1 [21.7 kB] Get:91 http://ftpmaster.internal/ubuntu/ trusty/main libhttp-message-perl all 6.06-1 [78.7 kB] Get:92 http://ftpmaster.internal/ubuntu/ trusty/main libhttp-cookies-perl all 6.00-2 [23.3 kB] Get:93 http://ftpmaster.internal/ubuntu/ trusty/main libhttp-negotiate-perl all 6.00-2 [13.4 kB] Get:94 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libnet-ssleay-perl arm64 1.55-1build1 [296 kB] Get:95 http://ftpmaster.internal/ubuntu/ trusty/main libio-socket-ssl-perl all 1.76-2ubuntu1 [51.4 kB] Get:96 http://ftpmaster.internal/ubuntu/ trusty/main libnet-http-perl all 6.06-1 [24.2 kB] Get:97 http://ftpmaster.internal/ubuntu/ trusty/main liblwp-protocol-https-perl all 6.04-1 [7190 B] Get:98 http://ftpmaster.internal/ubuntu/ trusty/main libwww-robotrules-perl all 6.01-1 [14.1 kB] Get:99 http://ftpmaster.internal/ubuntu/ trusty/main libwww-perl all 6.05-1 [155 kB] Get:100 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libxml-parser-perl arm64 2.41-1build3 [293 kB] Get:101 http://ftpmaster.internal/ubuntu/ trusty/main intltool all 0.50.2-2 [52.0 kB] Get:102 http://ftpmaster.internal/ubuntu/ trusty/main dh-translations all 118 [21.9 kB] Get:103 http://ftpmaster.internal/ubuntu/ trusty/main libpython2.7-stdlib arm64 2.7.5-8ubuntu3 [2332 kB] Get:104 http://ftpmaster.internal/ubuntu/ trusty/main python2.7 arm64 2.7.5-8ubuntu3 [192 kB] Get:105 http://ftpmaster.internal/ubuntu/ trusty/main python-minimal arm64 2.7.5-5ubuntu1 [31.5 kB] Get:106 http://ftpmaster.internal/ubuntu/ trusty/main libpython-stdlib arm64 2.7.5-5ubuntu1 [7770 B] Get:107 http://ftpmaster.internal/ubuntu/ trusty/main python arm64 2.7.5-5ubuntu1 [173 kB] Get:108 http://ftpmaster.internal/ubuntu/ trusty/main python-scour all 0.26-3 [46.5 kB] Get:109 http://ftpmaster.internal/ubuntu/ trusty/main cdbs all 0.4.122ubuntu1 [49.1 kB] Get:110 http://ftpmaster.internal/ubuntu/ trusty/main libgfortran-4.8-dev arm64 4.8.2-1ubuntu2 [357 kB] Get:111 http://ftpmaster.internal/ubuntu/ trusty/main gfortran-4.8 arm64 4.8.2-1ubuntu2 [5295 kB] Get:112 http://ftpmaster.internal/ubuntu/ trusty/main gfortran arm64 4:4.8.1-2ubuntu3 [1198 B] Get:113 http://ftpmaster.internal/ubuntu/ trusty/main libblas3 arm64 1.2.20110419-7 [172 kB] Get:114 http://ftpmaster.internal/ubuntu/ trusty/main libblas-dev arm64 1.2.20110419-7 [195 kB] Get:115 http://ftpmaster.internal/ubuntu/ trusty/main libbz2-dev arm64 1.0.6-5 [33.6 kB] Get:116 http://ftpmaster.internal/ubuntu/ trusty/main libjpeg-turbo8-dev arm64 1.3.0-0ubuntu1 [356 kB] Get:117 http://ftpmaster.internal/ubuntu/ trusty/main libjpeg8-dev arm64 8c-2ubuntu8 [1550 B] Get:118 http://ftpmaster.internal/ubuntu/ trusty/main libjpeg-dev arm64 8c-2ubuntu8 [1546 B] Get:119 http://ftpmaster.internal/ubuntu/ trusty/main liblapack3 arm64 3.4.2+dfsg-4 [2262 kB] Get:120 http://ftpmaster.internal/ubuntu/ trusty/main liblapack-dev arm64 3.4.2+dfsg-4 [2565 kB] Get:121 http://ftpmaster.internal/ubuntu/ trusty/main libtinfo-dev arm64 5.9+20130608-1ubuntu1 [99.3 kB] Get:122 http://ftpmaster.internal/ubuntu/ trusty/main libncurses5-dev arm64 5.9+20130608-1ubuntu1 [219 kB] Get:123 http://ftpmaster.internal/ubuntu/ trusty/main libpaper-utils arm64 1.1.24+nmu2ubuntu2 [8882 B] Get:124 http://ftpmaster.internal/ubuntu/ trusty/main libpcre3-dev arm64 1:8.31-2 [253 kB] Get:125 http://ftpmaster.internal/ubuntu/ trusty/main zlib1g-dev arm64 1:1.2.8.dfsg-1ubuntu1 [179 kB] Get:126 http://ftpmaster.internal/ubuntu/ trusty/main libpng12-dev arm64 1.2.49-4ubuntu1 [199 kB] Get:127 http://ftpmaster.internal/ubuntu/ trusty/main libreadline6-dev arm64 6.2-9ubuntu1 [258 kB] Get:128 http://ftpmaster.internal/ubuntu/ trusty/main libreadline-dev arm64 6.2-9ubuntu1 [934 B] Get:129 http://ftpmaster.internal/ubuntu/ trusty/main zip arm64 3.0-8 [248 kB] Get:130 http://ftpmaster.internal/ubuntu/ trusty/main unzip arm64 6.0-9ubuntu1 [187 kB] Get:131 http://ftpmaster.internal/ubuntu/ trusty/main xdg-utils all 1.1.0~rc1-2ubuntu7 [65.6 kB] Get:132 http://ftpmaster.internal/ubuntu/ trusty/main tcl8.5 arm64 8.5.13-1ubuntu4 [565 kB] Get:133 http://ftpmaster.internal/ubuntu/ trusty/main tk8.5 arm64 8.5.11-2ubuntu4 [443 kB] Get:134 http://ftpmaster.internal/ubuntu/ trusty/universe r-base-core arm64 3.0.1-3ubuntu1 [21.2 MB] Get:135 http://ftpmaster.internal/ubuntu/ trusty/universe r-base-dev all 3.0.1-3ubuntu1 [3946 B] Get:136 http://ftpmaster.internal/ubuntu/ trusty/universe r-bioc-biocgenerics all 0.6.0-1build1 [339 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 61.0 MB in 1min 37s (623 kB/s) Selecting previously unselected package libexpat1:arm64. 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Unpacking libhtml-tree-perl (from .../libhtml-tree-perl_5.03-1_all.deb) ... Selecting previously unselected package libio-html-perl. Unpacking libio-html-perl (from .../libio-html-perl_1.00-1_all.deb) ... Selecting previously unselected package liblwp-mediatypes-perl. Unpacking liblwp-mediatypes-perl (from .../liblwp-mediatypes-perl_6.02-1_all.deb) ... Selecting previously unselected package libhttp-message-perl. Unpacking libhttp-message-perl (from .../libhttp-message-perl_6.06-1_all.deb) ... Selecting previously unselected package libhttp-cookies-perl. Unpacking libhttp-cookies-perl (from .../libhttp-cookies-perl_6.00-2_all.deb) ... Selecting previously unselected package libhttp-negotiate-perl. Unpacking libhttp-negotiate-perl (from .../libhttp-negotiate-perl_6.00-2_all.deb) ... Selecting previously unselected package libnet-ssleay-perl. Unpacking libnet-ssleay-perl (from .../libnet-ssleay-perl_1.55-1build1_arm64.deb) ... 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Selecting previously unselected package dh-translations. Unpacking dh-translations (from .../dh-translations_118_all.deb) ... Selecting previously unselected package libpython2.7-stdlib:arm64. Unpacking libpython2.7-stdlib:arm64 (from .../libpython2.7-stdlib_2.7.5-8ubuntu3_arm64.deb) ... Selecting previously unselected package python2.7. Unpacking python2.7 (from .../python2.7_2.7.5-8ubuntu3_arm64.deb) ... Selecting previously unselected package python-minimal. Unpacking python-minimal (from .../python-minimal_2.7.5-5ubuntu1_arm64.deb) ... Selecting previously unselected package libpython-stdlib:arm64. Unpacking libpython-stdlib:arm64 (from .../libpython-stdlib_2.7.5-5ubuntu1_arm64.deb) ... Selecting previously unselected package python. Unpacking python (from .../python_2.7.5-5ubuntu1_arm64.deb) ... Selecting previously unselected package python-scour. Unpacking python-scour (from .../python-scour_0.26-3_all.deb) ... Selecting previously unselected package cdbs. Unpacking cdbs (from .../cdbs_0.4.122ubuntu1_all.deb) ... Selecting previously unselected package libgfortran-4.8-dev:arm64. Unpacking libgfortran-4.8-dev:arm64 (from .../libgfortran-4.8-dev_4.8.2-1ubuntu2_arm64.deb) ... Selecting previously unselected package gfortran-4.8. Unpacking gfortran-4.8 (from .../gfortran-4.8_4.8.2-1ubuntu2_arm64.deb) ... Selecting previously unselected package gfortran. Unpacking gfortran (from .../gfortran_4%3a4.8.1-2ubuntu3_arm64.deb) ... Selecting previously unselected package libblas3. Unpacking libblas3 (from .../libblas3_1.2.20110419-7_arm64.deb) ... Selecting previously unselected package libblas-dev. Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-7_arm64.deb) ... Selecting previously unselected package libbz2-dev:arm64. Unpacking libbz2-dev:arm64 (from .../libbz2-dev_1.0.6-5_arm64.deb) ... Selecting previously unselected package libjpeg-turbo8-dev:arm64. Unpacking libjpeg-turbo8-dev:arm64 (from .../libjpeg-turbo8-dev_1.3.0-0ubuntu1_arm64.deb) ... Selecting previously unselected package libjpeg8-dev:arm64. Unpacking libjpeg8-dev:arm64 (from .../libjpeg8-dev_8c-2ubuntu8_arm64.deb) ... Selecting previously unselected package libjpeg-dev:arm64. Unpacking libjpeg-dev:arm64 (from .../libjpeg-dev_8c-2ubuntu8_arm64.deb) ... Selecting previously unselected package liblapack3. Unpacking liblapack3 (from .../liblapack3_3.4.2+dfsg-4_arm64.deb) ... Selecting previously unselected package liblapack-dev. Unpacking liblapack-dev (from .../liblapack-dev_3.4.2+dfsg-4_arm64.deb) ... Selecting previously unselected package libtinfo-dev:arm64. Unpacking libtinfo-dev:arm64 (from .../libtinfo-dev_5.9+20130608-1ubuntu1_arm64.deb) ... Selecting previously unselected package libncurses5-dev:arm64. Unpacking libncurses5-dev:arm64 (from .../libncurses5-dev_5.9+20130608-1ubuntu1_arm64.deb) ... Selecting previously unselected package libpaper-utils. Unpacking libpaper-utils (from .../libpaper-utils_1.1.24+nmu2ubuntu2_arm64.deb) ... Selecting previously unselected package libpcre3-dev:arm64. Unpacking libpcre3-dev:arm64 (from .../libpcre3-dev_1%3a8.31-2_arm64.deb) ... Selecting previously unselected package zlib1g-dev:arm64. Unpacking zlib1g-dev:arm64 (from .../zlib1g-dev_1%3a1.2.8.dfsg-1ubuntu1_arm64.deb) ... Selecting previously unselected package libpng12-dev. Unpacking libpng12-dev (from .../libpng12-dev_1.2.49-4ubuntu1_arm64.deb) ... Selecting previously unselected package libreadline6-dev:arm64. Unpacking libreadline6-dev:arm64 (from .../libreadline6-dev_6.2-9ubuntu1_arm64.deb) ... Selecting previously unselected package libreadline-dev:arm64. Unpacking libreadline-dev:arm64 (from .../libreadline-dev_6.2-9ubuntu1_arm64.deb) ... Selecting previously unselected package zip. Unpacking zip (from .../archives/zip_3.0-8_arm64.deb) ... Selecting previously unselected package unzip. Unpacking unzip (from .../unzip_6.0-9ubuntu1_arm64.deb) ... Selecting previously unselected package xdg-utils. Unpacking xdg-utils (from .../xdg-utils_1.1.0~rc1-2ubuntu7_all.deb) ... Selecting previously unselected package tcl8.5. Unpacking tcl8.5 (from .../tcl8.5_8.5.13-1ubuntu4_arm64.deb) ... Selecting previously unselected package tk8.5. Unpacking tk8.5 (from .../tk8.5_8.5.11-2ubuntu4_arm64.deb) ... Selecting previously unselected package r-base-core. Unpacking r-base-core (from .../r-base-core_3.0.1-3ubuntu1_arm64.deb) ... Selecting previously unselected package r-base-dev. Unpacking r-base-dev (from .../r-base-dev_3.0.1-3ubuntu1_all.deb) ... Selecting previously unselected package r-bioc-biocgenerics. Unpacking r-bioc-biocgenerics (from .../r-bioc-biocgenerics_0.6.0-1build1_all.deb) ... Setting up libexpat1:arm64 (2.1.0-4) ... Setting up libffi6:arm64 (3.0.13-4) ... Setting up libmagic1:arm64 (5.11-2ubuntu4) ... Setting up libssl1.0.0:arm64 (1.0.1e-3ubuntu1) ... Setting up libpython3.3-minimal:arm64 (3.3.2-7ubuntu3) ... Setting up mime-support (3.54ubuntu1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode Setting up libpython3.3-stdlib:arm64 (3.3.2-7ubuntu3) ... Setting up python3.3-minimal (3.3.2-7ubuntu3) ... Setting up libasprintf0c2:arm64 (0.18.3.1-1ubuntu1) ... Setting up libglib2.0-0:arm64 (2.38.1-1) ... No schema files found: doing nothing. Setting up libpipeline1:arm64 (1.2.4-1) ... Setting up libxau6:arm64 (1:1.0.8-1) ... Setting up libxdmcp6:arm64 (1:1.1.1-1) ... Setting up libxcb1:arm64 (1.9.1-3ubuntu1) ... Setting up libx11-data (2:1.6.1-1ubuntu1) ... Setting up libx11-6:arm64 (2:1.6.1-1ubuntu1) ... Setting up libxext6:arm64 (2:1.3.2-1) ... Setting up libxml2:arm64 (2.9.1+dfsg1-3ubuntu2) ... Setting up groff-base (1.22.2-3) ... Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up ucf (3.0027+nmu1) ... Setting up fonts-dejavu-core (2.33+svn2514-3ubuntu1) ... Setting up ttf-dejavu-core (2.33+svn2514-3ubuntu1) ... Setting up fontconfig-config (2.10.93-0ubuntu1) ... Setting up libfreetype6:arm64 (2.4.12-0ubuntu1) ... Setting up libfontconfig1:arm64 (2.10.93-0ubuntu1) ... Setting up libpixman-1-0:arm64 (0.30.2-1) ... Setting up libxcb-render0:arm64 (1.9.1-3ubuntu1) ... Setting up libxcb-shm0:arm64 (1.9.1-3ubuntu1) ... Setting up libxrender1:arm64 (1:0.9.8-1) ... Setting up libcairo2:arm64 (1.12.16-0ubuntu2) ... Setting up libcroco3:arm64 (0.6.8-2) ... Setting up libdatrie1:arm64 (0.2.7.1-1) ... Setting up libgfortran3:arm64 (4.8.2-1ubuntu2) ... Setting up libgraphite2-3:arm64 (1.2.3-1) ... Setting up libharfbuzz0a:arm64 (0.9.19-1) ... Setting up x11-common (1:7.7+1ubuntu6) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:arm64 (2:1.0.8-2) ... Setting up libjpeg-turbo8:arm64 (1.3.0-0ubuntu1) ... Setting up libthai-data (0.1.19-2) ... Setting up libthai0:arm64 (0.1.19-2) ... Setting up fontconfig (2.10.93-0ubuntu1) ... Regenerating fonts cache... done. Setting up libpango-1.0-0:arm64 (1.36.0-1ubuntu1) ... Setting up libpangoft2-1.0-0:arm64 (1.36.0-1ubuntu1) ... Setting up libpangocairo-1.0-0:arm64 (1.36.0-1ubuntu1) ... Setting up libpaper1:arm64 (1.1.24+nmu2ubuntu2) ... Creating config file /etc/papersize with new version Setting up libpcrecpp0:arm64 (1:8.31-2) ... Setting up libsigsegv2:arm64 (2.10-2) ... Setting up libsm6:arm64 (2:1.2.1-2) ... Setting up libjbig0:arm64 (2.0-2ubuntu1) ... Setting up libjpeg8:arm64 (8c-2ubuntu8) ... Setting up libtiff5:arm64 (4.0.2-4ubuntu3) ... Setting up libunistring0:arm64 (0.9.3-5ubuntu1) ... Setting up libxft2:arm64 (2.3.1-1) ... Setting up libxss1:arm64 (1:1.2.2-1) ... Setting up libxt6:arm64 (1:1.1.4-1) ... Setting up libpython2.7-minimal:arm64 (2.7.5-8ubuntu3) ... Setting up python2.7-minimal (2.7.5-8ubuntu3) ... Linking and byte-compiling packages for runtime python2.7... Setting up tcl8.5-lib:arm64 (8.5.13-1ubuntu4) ... Setting up tk8.5-lib:arm64 (8.5.11-2ubuntu4) ... Setting up python3.3 (3.3.2-7ubuntu3) ... Setting up python3-minimal (3.3.2-14ubuntu1) ... Setting up libpython3-stdlib:arm64 (3.3.2-14ubuntu1) ... Setting up file (5.11-2ubuntu4) ... Setting up netbase (5.1) ... Setting up openssl (1.0.1e-3ubuntu1) ... Setting up ca-certificates (20130906) ... Setting up gettext-base (0.18.3.1-1ubuntu1) ... Setting up m4 (1.4.17-1) ... Setting up autoconf (2.69-1.1) ... Setting up autotools-dev (20130810.1) ... Setting up automake (1:1.13.3-1.1ubuntu2) ... update-alternatives: using /usr/bin/automake-1.13 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.18.3.1-1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up liburi-perl (1.60-1) ... Setting up libencode-locale-perl (1.03-1) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.71-1build1) ... Setting up libhtml-tree-perl (5.03-1) ... Setting up libio-html-perl (1.00-1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up libhttp-message-perl (6.06-1) ... Setting up libhttp-cookies-perl (6.00-2) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libnet-ssleay-perl (1.55-1build1) ... Setting up libio-socket-ssl-perl (1.76-2ubuntu1) ... Setting up libnet-http-perl (6.06-1) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up libpython2.7-stdlib:arm64 (2.7.5-8ubuntu3) ... Setting up python2.7 (2.7.5-8ubuntu3) ... Setting up python-minimal (2.7.5-5ubuntu1) ... Setting up libpython-stdlib:arm64 (2.7.5-5ubuntu1) ... Setting up python (2.7.5-5ubuntu1) ... Setting up python-scour (0.26-3) ... Setting up libgfortran-4.8-dev:arm64 (4.8.2-1ubuntu2) ... Setting up gfortran-4.8 (4.8.2-1ubuntu2) ... Setting up gfortran (4:4.8.1-2ubuntu3) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode Setting up libblas3 (1.2.20110419-7) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up libblas-dev (1.2.20110419-7) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode Setting up libbz2-dev:arm64 (1.0.6-5) ... Setting up libjpeg-turbo8-dev:arm64 (1.3.0-0ubuntu1) ... Setting up libjpeg8-dev:arm64 (8c-2ubuntu8) ... Setting up libjpeg-dev:arm64 (8c-2ubuntu8) ... Setting up liblapack3 (3.4.2+dfsg-4) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up liblapack-dev (3.4.2+dfsg-4) ... update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode Setting up libtinfo-dev:arm64 (5.9+20130608-1ubuntu1) ... Setting up libncurses5-dev:arm64 (5.9+20130608-1ubuntu1) ... Setting up libpaper-utils (1.1.24+nmu2ubuntu2) ... Setting up libpcre3-dev:arm64 (1:8.31-2) ... Setting up zlib1g-dev:arm64 (1:1.2.8.dfsg-1ubuntu1) ... Setting up libpng12-dev (1.2.49-4ubuntu1) ... Setting up libreadline6-dev:arm64 (6.2-9ubuntu1) ... Setting up libreadline-dev:arm64 (6.2-9ubuntu1) ... Setting up zip (3.0-8) ... Setting up unzip (6.0-9ubuntu1) ... Setting up xdg-utils (1.1.0~rc1-2ubuntu7) ... Setting up tcl8.5 (8.5.13-1ubuntu4) ... update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode Setting up tk8.5 (8.5.11-2ubuntu4) ... update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode Setting up r-base-core (3.0.1-3ubuntu1) ... Creating config file /etc/R/Renviron with new version Setting up r-bioc-biocgenerics (0.6.0-1build1) ... Setting up libwww-perl (6.05-1) ... Setting up libxml-parser-perl (2.41-1build3) ... Setting up intltool (0.50.2-2) ... Setting up python3 (3.3.2-14ubuntu1) ... running python rtupdate hooks for python3.3... running python post-rtupdate hooks for python3.3... Setting up dh-python (1.20131021-1) ... Setting up apparmor-easyprof (2.8.0-0ubuntu32) ... Setting up dh-apparmor (2.8.0-0ubuntu32) ... Setting up debhelper (9.20130921ubuntu1) ... Setting up liblwp-protocol-https-perl (6.04-1) ... Setting up dh-translations (118) ... Setting up cdbs (0.4.122ubuntu1) ... Setting up r-base-dev (3.0.1-3ubuntu1) ... Processing triggers for libc-bin ... Processing triggers for ca-certificates ... Updating certificates in /etc/ssl/certs... 164 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d....done. Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.17-93ubuntu4 make_3.81-8.2ubuntu3 dpkg-dev_1.16.12ubuntu1 gcc-4.8_4.8.2-1ubuntu2 g++-4.8_4.8.2-1ubuntu2 binutils_2.23.90.20131017-1ubuntu1 libstdc++-4.8-dev_4.8.2-1ubuntu2 libstdc++6_4.8.2-1ubuntu2 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Sun Sep 8 16:08:23 2013 UTC using DSA key ID C09FD35A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./r-bioc-graph_1.38.3-1.dsc dpkg-source: info: extracting r-bioc-graph in r-bioc-graph-1.38.3 dpkg-source: info: unpacking r-bioc-graph_1.38.3.orig.tar.gz dpkg-source: info: unpacking r-bioc-graph_1.38.3-1.debian.tar.gz dpkg-buildpackage: source package r-bioc-graph dpkg-buildpackage: source version 1.38.3-1 dpkg-source --before-build r-bioc-graph-1.38.3 dpkg-buildpackage: host architecture arm64 /usr/bin/fakeroot debian/rules clean test -x debian/rules dh_clean if test -d src; then \ find src -regex ".*\..*o" | \ xargs --no-run-if-empty -r rm; \ fi rm -f config.log config.status debian/rules build-arch test -x debian/rules mkdir -p "." /usr/bin/fakeroot debian/rules binary-arch test -x debian/rules dh_testroot dh_prep dh_installdirs -A mkdir -p "." dh_installdirs usr/lib/R/site-library echo "R:Depends=r-base-core (>= 3.0.1-3ubuntu1)" >> debian/r-bioc-graph.substvars if test -f /usr/bin/xvfb-run; then \ xvfb-run -a \ R CMD INSTALL -l /build/buildd/r-bioc-graph-1.38.3/debian/r-bioc-graph/usr/lib/R/site-library --clean \ . ; \ else \ R CMD INSTALL -l /build/buildd/r-bioc-graph-1.38.3/debian/r-bioc-graph/usr/lib/R/site-library \ --clean . ;\ fi * installing *source* package 'graph' ... ** libs make[1]: Entering directory `/build/buildd/r-bioc-graph-1.38.3/src' gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c graph.c -o graph.o gcc -std=gnu99 -shared -o graph.so graph.o -L/usr/lib/R/lib -lR mv graph.so BioC_graph.so make[1]: Leaving directory `/build/buildd/r-bioc-graph-1.38.3/src' make[1]: Entering directory `/build/buildd/r-bioc-graph-1.38.3/src' make[1]: Leaving directory `/build/buildd/r-bioc-graph-1.38.3/src' installing to /build/buildd/r-bioc-graph-1.38.3/debian/r-bioc-graph/usr/lib/R/site-library/graph/libs ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) : data set 'MAPKsig' not found Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) : data set 'apopGraph' not found Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) : data set 'biocRepos' not found Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) : data set 'defunctGraph' not found Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) : data set 'esetsFemale' not found Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) : data set 'esetsMale' not found Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) : data set 'graphExamples' not found Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) : data set 'integrinMediatedCellAdhesion' not found Warning in utils::data(list = f, package = package, lib.loc = lib.loc, envir = dataEnv) : data set 'pancrCaIni' not found ** installing vignettes ** testing if installed package can be loaded * DONE (graph) rm -vf /build/buildd/r-bioc-graph-1.38.3/debian/r-bioc-graph/usr/lib/R/site-library/R.css \ /build/buildd/r-bioc-graph-1.38.3/debian/r-bioc-graph/usr/lib/R/site-library/graph/COPYING \ /build/buildd/r-bioc-graph-1.38.3/debian/r-bioc-graph/usr/lib/R/site-library/graph/LICENSE.txt if test -f debian/overrides; then \ install -d /build/buildd/r-bioc-graph-1.38.3/debian/r-bioc-graph/usr/share/lintian/overrides ; \ install -m 0644 debian/overrides \ /build/buildd/r-bioc-graph-1.38.3/debian/r-bioc-graph/usr/share/lintian/overrides/r-bioc-graph; \ fi Adding cdbs dependencies to debian/r-bioc-graph.substvars dh_installdirs -pr-bioc-graph dh_installdocs -pr-bioc-graph ./TODO dh_installexamples -pr-bioc-graph dh_installman -pr-bioc-graph dh_installinfo -pr-bioc-graph dh_installmenu -pr-bioc-graph dh_installcron -pr-bioc-graph dh_installinit -pr-bioc-graph dh_installdebconf -pr-bioc-graph dh_installemacsen -pr-bioc-graph dh_installcatalogs -pr-bioc-graph dh_installpam -pr-bioc-graph dh_installlogrotate -pr-bioc-graph dh_installlogcheck -pr-bioc-graph dh_installchangelogs -pr-bioc-graph dh_installudev -pr-bioc-graph dh_lintian -pr-bioc-graph dh_bugfiles -pr-bioc-graph dh_install -pr-bioc-graph dh_link -pr-bioc-graph dh_installmime -pr-bioc-graph dh_installgsettings -pr-bioc-graph dh_strip -pr-bioc-graph dh_strip debug symbol extraction: all non-arch-all packages for this build platform arm64: r-bioc-graph dh_strip debug symbol extraction: packages to act on: r-bioc-graph dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-deb: building package `r-bioc-graph-dbgsym' in `../r-bioc-graph-dbgsym_1.38.3-1_arm64.ddeb'. dh_compress -pr-bioc-graph dh_fixperms -pr-bioc-graph dh_makeshlibs -pr-bioc-graph dh_installdeb -pr-bioc-graph dh_perl -pr-bioc-graph dh_shlibdeps -pr-bioc-graph dh_gencontrol -pr-bioc-graph dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe # only call dh_scour for packages in main if grep -q '^Component:[[:space:]]*main' /CurrentlyBuilding 2>/dev/null; then dh_scour -pr-bioc-graph ; fi dh_md5sums -pr-bioc-graph dh_builddeb -pr-bioc-graph INFO: pkgstriptranslations version 118 pkgstriptranslations: processing r-bioc-graph (in debian/r-bioc-graph); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-bioc-graph/DEBIAN/control, package r-bioc-graph, directory debian/r-bioc-graph pkgstripfiles: PNG optimization for package r-bioc-graph took 0 s dpkg-deb: warning: 'debian/r-bioc-graph/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `r-bioc-graph' in `../r-bioc-graph_1.38.3-1_arm64.deb'. dpkg-genchanges -B -mUbuntu Build Daemon >../r-bioc-graph_1.38.3-1_arm64.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build r-bioc-graph-1.38.3 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20131023-0227 Publishing debug debs. chroot-autobuild/build/buildd/r-bioc-graph_1.38.3-1_arm64.deb: new debian package, version 2.0. size 1332076 bytes: control archive=3470 bytes. 678 bytes, 14 lines control 8198 bytes, 98 lines md5sums Package: r-bioc-graph Version: 1.38.3-1 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1840 Depends: r-base-core (>= 3.0.1-3ubuntu1), libc6 (>= 2.17), r-bioc-biocgenerics Section: gnu-r Priority: optional Homepage: http://bioconductor.org/packages/2.12/bioc/html/graph.html Description: handle graph data structures for BioConductor This BioConductor module implements some simple graph handling capabilities. 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Fri, 23 Aug 2013 09:23:02 +0200 Source: r-bioc-graph Binary: r-bioc-graph Architecture: arm64 Version: 1.38.3-1 Distribution: trusty-proposed Urgency: low Maintainer: Ubuntu Build Daemon Changed-By: Andreas Tille Description: r-bioc-graph - handle graph data structures for BioConductor Closes: 720583 Changes: r-bioc-graph (1.38.3-1) unstable; urgency=low . * Initial release (closes: #720583) Checksums-Sha1: 2c13dcbb0745cecad0125baa1ed36db80d0a92e3 1332076 r-bioc-graph_1.38.3-1_arm64.deb Checksums-Sha256: 72694b655e9cac90cbf7ec6ad160485416dd108961deb5fdffac15b23a2c703c 1332076 r-bioc-graph_1.38.3-1_arm64.deb Files: 650a1c8ccaa9ab3b435057e5d4bc2cff 1332076 gnu-r optional r-bioc-graph_1.38.3-1_arm64.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20131023-0227 Build needed 00:00:31, 5480k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-5144998'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-5144998/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-5144998'] Unmounting chroot for build PACKAGEBUILD-5144998... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-5144998'] Removing build PACKAGEBUILD-5144998