RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux kishi09 3.2.0-67-highbank #101-Ubuntu SMP PREEMPT Tue Jul 15 18:38:06 UTC 2014 armv7l Buildd toolchain package versions: launchpad-buildd_125 python-lpbuildd_125 bzr_2.5.1-0ubuntu2 dpkg-dev_1.16.1.2ubuntu7.5. Syncing the system clock with the buildd NTP service... 25 Oct 14:31:40 ntpdate[12266]: adjust time server 10.211.37.1 offset 0.000099 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-6500031', '/home/buildd/filecache-default/d07e8cc4ecf4426b85f8dac93ffd1d24d96a58d8'] Unpacking chroot for build PACKAGEBUILD-6500031 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-6500031'] Mounting chroot for build PACKAGEBUILD-6500031 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-6500031', 'deb http://ftpmaster.internal/ubuntu vivid main universe', 'deb http://ftpmaster.internal/ubuntu vivid-security main universe', 'deb http://ftpmaster.internal/ubuntu vivid-updates main universe', 'deb http://ftpmaster.internal/ubuntu vivid-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-6500031 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-6500031', 'armhf'] Updating debian chroot for build PACKAGEBUILD-6500031 Ign http://ftpmaster.internal vivid InRelease Ign http://ftpmaster.internal vivid-security InRelease Ign http://ftpmaster.internal vivid-updates InRelease Ign http://ftpmaster.internal vivid-proposed InRelease Ign http://archive-team.internal vivid InRelease Get:1 http://ftpmaster.internal vivid Release.gpg [933 B] Ign http://archive-team.internal vivid Release.gpg Get:2 http://ftpmaster.internal vivid-security Release.gpg [933 B] Get:3 http://ftpmaster.internal vivid-updates Release.gpg [933 B] Get:4 http://ftpmaster.internal vivid-proposed Release.gpg [933 B] Get:5 http://ftpmaster.internal vivid Release [112 kB] Get:6 http://archive-team.internal vivid Release [728 B] Get:7 http://ftpmaster.internal vivid-security Release [59.7 kB] Get:8 http://ftpmaster.internal vivid-updates Release [59.7 kB] Get:9 http://archive-team.internal vivid/main armhf Packages Get:10 http://ftpmaster.internal vivid-proposed Release [59.7 kB] Ign http://archive-team.internal vivid/main Translation-en Get:11 http://ftpmaster.internal vivid/main armhf Packages [1300 kB] Get:12 http://ftpmaster.internal vivid/universe armhf Packages [6049 kB] Get:13 http://ftpmaster.internal vivid/main Translation-en [769 kB] Get:14 http://ftpmaster.internal vivid/universe Translation-en [4276 kB] Get:15 http://ftpmaster.internal vivid-security/main armhf Packages [14 B] Get:16 http://ftpmaster.internal vivid-security/universe armhf Packages [14 B] Get:17 http://ftpmaster.internal vivid-security/main Translation-en [14 B] Get:18 http://ftpmaster.internal vivid-security/universe Translation-en [14 B] Get:19 http://ftpmaster.internal vivid-updates/main armhf Packages [14 B] Get:20 http://ftpmaster.internal vivid-updates/universe armhf Packages [14 B] Get:21 http://ftpmaster.internal vivid-updates/main Translation-en [14 B] Get:22 http://ftpmaster.internal vivid-updates/universe Translation-en [14 B] Get:23 http://ftpmaster.internal vivid-proposed/main armhf Packages [57.9 kB] Get:24 http://ftpmaster.internal vivid-proposed/universe armhf Packages [281 kB] Get:25 http://ftpmaster.internal vivid-proposed/main Translation-en [39.4 kB] Get:26 http://ftpmaster.internal vivid-proposed/universe Translation-en [188 kB] Fetched 13.3 MB in 16s (790 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: base-files binutils ca-certificates cpp-4.9 g++-4.9 gcc-4.9 gcc-4.9-base grep libacl1 libasan1 libatomic1 libdb5.3 libdrm2 libgcc-4.9-dev libgcc1 libgmp10 libgomp1 libgpg-error0 libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 libp11-kit0 libplymouth4 libsasl2-2 libsasl2-modules-db libselinux1 libsqlite3-0 libstdc++-4.9-dev libstdc++6 libsystemd-journal0 libtasn1-6 libubsan0 libudev1 libusb-0.1-4 patch perl-modules plymouth tzdata udev 40 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 28.2 MB of archives. After this operation, 191 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ vivid/main base-files armhf 7.2ubuntu8 [66.6 kB] Get:2 http://ftpmaster.internal/ubuntu/ vivid/main grep armhf 2.20-4 [135 kB] Get:3 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libubsan0 armhf 4.9.1-19ubuntu1 [72.1 kB] Get:4 http://ftpmaster.internal/ubuntu/ vivid-proposed/main gcc-4.9-base armhf 4.9.1-19ubuntu1 [15.9 kB] Get:5 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libstdc++6 armhf 4.9.1-19ubuntu1 [249 kB] Get:6 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libgomp1 armhf 4.9.1-19ubuntu1 [36.9 kB] Get:7 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libatomic1 armhf 4.9.1-19ubuntu1 [6364 B] Get:8 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libasan1 armhf 4.9.1-19ubuntu1 [174 kB] Get:9 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libgcc-4.9-dev armhf 4.9.1-19ubuntu1 [369 kB] Get:10 http://ftpmaster.internal/ubuntu/ vivid-proposed/main cpp-4.9 armhf 4.9.1-19ubuntu1 [4293 kB] Get:11 http://ftpmaster.internal/ubuntu/ vivid-proposed/main binutils armhf 2.24.90.20141023-1ubuntu1 [2263 kB] Get:12 http://ftpmaster.internal/ubuntu/ vivid-proposed/main gcc-4.9 armhf 4.9.1-19ubuntu1 [4748 kB] Get:13 http://ftpmaster.internal/ubuntu/ vivid-proposed/main g++-4.9 armhf 4.9.1-19ubuntu1 [8703 kB] Get:14 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libstdc++-4.9-dev armhf 4.9.1-19ubuntu1 [1147 kB] Get:15 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libgcc1 armhf 1:4.9.1-19ubuntu1 [40.0 kB] Get:16 http://ftpmaster.internal/ubuntu/ vivid/main libgmp10 armhf 2:6.0.0+dfsg-6 [195 kB] Get:17 http://ftpmaster.internal/ubuntu/ vivid/main libusb-0.1-4 armhf 2:0.1.12-25 [15.0 kB] Get:18 http://ftpmaster.internal/ubuntu/ vivid/main libacl1 armhf 2.2.52-2 [13.7 kB] Get:19 http://ftpmaster.internal/ubuntu/ vivid/main libdb5.3 armhf 5.3.28-6 [594 kB] Get:20 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libgpg-error0 armhf 1.17-2 [28.0 kB] Get:21 http://ftpmaster.internal/ubuntu/ vivid/main libselinux1 armhf 2.3-2 [51.9 kB] Get:22 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libsystemd-journal0 armhf 215-5ubuntu1 [49.0 kB] Get:23 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libp11-kit0 armhf 0.20.7-1 [66.2 kB] Get:24 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libsqlite3-0 armhf 3.8.7-1 [316 kB] Get:25 http://ftpmaster.internal/ubuntu/ vivid/main libtasn1-6 armhf 4.2-2 [36.5 kB] Get:26 http://ftpmaster.internal/ubuntu/ vivid/main libdrm2 armhf 2.4.58-2 [20.9 kB] Get:27 http://ftpmaster.internal/ubuntu/ vivid/main plymouth armhf 0.9.0-0ubuntu8 [88.6 kB] Get:28 http://ftpmaster.internal/ubuntu/ vivid-proposed/main udev armhf 215-5ubuntu1 [832 kB] Get:29 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libudev1 armhf 215-5ubuntu1 [29.3 kB] Get:30 http://ftpmaster.internal/ubuntu/ vivid/main libplymouth4 armhf 0.9.0-0ubuntu8 [73.8 kB] Get:31 http://ftpmaster.internal/ubuntu/ vivid/main libgssapi-krb5-2 armhf 1.12.1+dfsg-11 [99.2 kB] Get:32 http://ftpmaster.internal/ubuntu/ vivid/main libkrb5-3 armhf 1.12.1+dfsg-11 [228 kB] Get:33 http://ftpmaster.internal/ubuntu/ vivid/main libkrb5support0 armhf 1.12.1+dfsg-11 [27.0 kB] Get:34 http://ftpmaster.internal/ubuntu/ vivid/main libk5crypto3 armhf 1.12.1+dfsg-11 [79.3 kB] Get:35 http://ftpmaster.internal/ubuntu/ vivid/main libsasl2-modules-db armhf 2.1.26.dfsg1-12 [13.0 kB] Get:36 http://ftpmaster.internal/ubuntu/ vivid/main libsasl2-2 armhf 2.1.26.dfsg1-12 [42.7 kB] Get:37 http://ftpmaster.internal/ubuntu/ vivid/main tzdata all 2014i-1 [182 kB] Get:38 http://ftpmaster.internal/ubuntu/ vivid-proposed/main perl-modules all 5.20.1-2 [2531 kB] Get:39 http://ftpmaster.internal/ubuntu/ vivid/main ca-certificates all 20141019 [192 kB] Get:40 http://ftpmaster.internal/ubuntu/ vivid/main patch armhf 2.7.1-6 [78.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 28.2 MB in 3s (7247 kB/s) (Reading database ... 11279 files and directories currently installed.) Preparing to unpack .../base-files_7.2ubuntu8_armhf.deb ... Unpacking base-files (7.2ubuntu8) over (7.2ubuntu7) ... Setting up base-files (7.2ubuntu8) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Installing new version of config file /etc/os-release ... (Reading database ... 11279 files and directories currently installed.) Preparing to unpack .../archives/grep_2.20-4_armhf.deb ... Unpacking grep (2.20-4) over (2.20-3) ... Setting up grep (2.20-4) ... (Reading database ... 11279 files and directories currently installed.) Preparing to unpack .../libubsan0_4.9.1-19ubuntu1_armhf.deb ... Unpacking libubsan0:armhf (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../gcc-4.9-base_4.9.1-19ubuntu1_armhf.deb ... Unpacking gcc-4.9-base:armhf (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Setting up gcc-4.9-base:armhf (4.9.1-19ubuntu1) ... (Reading database ... 11279 files and directories currently installed.) Preparing to unpack .../libstdc++6_4.9.1-19ubuntu1_armhf.deb ... Unpacking libstdc++6:armhf (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Setting up libstdc++6:armhf (4.9.1-19ubuntu1) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11279 files and directories currently installed.) Preparing to unpack .../libgomp1_4.9.1-19ubuntu1_armhf.deb ... Unpacking libgomp1:armhf (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libatomic1_4.9.1-19ubuntu1_armhf.deb ... Unpacking libatomic1:armhf (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libasan1_4.9.1-19ubuntu1_armhf.deb ... Unpacking libasan1:armhf (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libgcc-4.9-dev_4.9.1-19ubuntu1_armhf.deb ... Unpacking libgcc-4.9-dev:armhf (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../cpp-4.9_4.9.1-19ubuntu1_armhf.deb ... Unpacking cpp-4.9 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../binutils_2.24.90.20141023-1ubuntu1_armhf.deb ... Unpacking binutils (2.24.90.20141023-1ubuntu1) over (2.24.90.20141014-0ubuntu3) ... Preparing to unpack .../gcc-4.9_4.9.1-19ubuntu1_armhf.deb ... Unpacking gcc-4.9 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../g++-4.9_4.9.1-19ubuntu1_armhf.deb ... Unpacking g++-4.9 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libstdc++-4.9-dev_4.9.1-19ubuntu1_armhf.deb ... Unpacking libstdc++-4.9-dev:armhf (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libgcc1_1%3a4.9.1-19ubuntu1_armhf.deb ... Unpacking libgcc1:armhf (1:4.9.1-19ubuntu1) over (1:4.9.1-16ubuntu6) ... Setting up libgcc1:armhf (1:4.9.1-19ubuntu1) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11283 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.0.0+dfsg-6_armhf.deb ... Unpacking libgmp10:armhf (2:6.0.0+dfsg-6) over (2:6.0.0+dfsg-4build1) ... Preparing to unpack .../libusb-0.1-4_2%3a0.1.12-25_armhf.deb ... Unpacking libusb-0.1-4:armhf (2:0.1.12-25) over (2:0.1.12-24) ... Setting up libusb-0.1-4:armhf (2:0.1.12-25) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11284 files and directories currently installed.) Preparing to unpack .../libacl1_2.2.52-2_armhf.deb ... Unpacking libacl1:armhf (2.2.52-2) over (2.2.52-1.1) ... Setting up libacl1:armhf (2.2.52-2) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11284 files and directories currently installed.) Preparing to unpack .../libdb5.3_5.3.28-6_armhf.deb ... Unpacking libdb5.3:armhf (5.3.28-6) over (5.3.28-5) ... Setting up libdb5.3:armhf (5.3.28-6) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11284 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.17-2_armhf.deb ... Unpacking libgpg-error0:armhf (1.17-2) over (1.13-4) ... Setting up libgpg-error0:armhf (1.17-2) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11284 files and directories currently installed.) Preparing to unpack .../libselinux1_2.3-2_armhf.deb ... Unpacking libselinux1:armhf (2.3-2) over (2.3-1build1) ... Setting up libselinux1:armhf (2.3-2) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11284 files and directories currently installed.) Preparing to unpack .../libsystemd-journal0_215-5ubuntu1_armhf.deb ... Unpacking libsystemd-journal0:armhf (215-5ubuntu1) over (208-8ubuntu8) ... Setting up libsystemd-journal0:armhf (215-5ubuntu1) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11284 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.20.7-1_armhf.deb ... Unpacking libp11-kit0:armhf (0.20.7-1) over (0.20.2-5) ... Preparing to unpack .../libsqlite3-0_3.8.7-1_armhf.deb ... Unpacking libsqlite3-0:armhf (3.8.7-1) over (3.8.6-1) ... Preparing to unpack .../libtasn1-6_4.2-2_armhf.deb ... Unpacking libtasn1-6:armhf (4.2-2) over (4.0-2) ... Preparing to unpack .../libdrm2_2.4.58-2_armhf.deb ... Unpacking libdrm2:armhf (2.4.58-2) over (2.4.56-1) ... Preparing to unpack .../plymouth_0.9.0-0ubuntu8_armhf.deb ... Unpacking plymouth (0.9.0-0ubuntu8) over (0.9.0-0ubuntu7) ... Preparing to unpack .../udev_215-5ubuntu1_armhf.deb ... Unpacking udev (215-5ubuntu1) over (208-8ubuntu8) ... Preparing to unpack .../libudev1_215-5ubuntu1_armhf.deb ... Unpacking libudev1:armhf (215-5ubuntu1) over (208-8ubuntu8) ... Preparing to unpack .../libplymouth4_0.9.0-0ubuntu8_armhf.deb ... Unpacking libplymouth4:armhf (0.9.0-0ubuntu8) over (0.9.0-0ubuntu7) ... Preparing to unpack .../libgssapi-krb5-2_1.12.1+dfsg-11_armhf.deb ... Unpacking libgssapi-krb5-2:armhf (1.12.1+dfsg-11) over (1.12.1+dfsg-10) ... Preparing to unpack .../libkrb5-3_1.12.1+dfsg-11_armhf.deb ... Unpacking libkrb5-3:armhf (1.12.1+dfsg-11) over (1.12.1+dfsg-10) ... Preparing to unpack .../libkrb5support0_1.12.1+dfsg-11_armhf.deb ... Unpacking libkrb5support0:armhf (1.12.1+dfsg-11) over (1.12.1+dfsg-10) ... Preparing to unpack .../libk5crypto3_1.12.1+dfsg-11_armhf.deb ... Unpacking libk5crypto3:armhf (1.12.1+dfsg-11) over (1.12.1+dfsg-10) ... Preparing to unpack .../libsasl2-modules-db_2.1.26.dfsg1-12_armhf.deb ... Unpacking libsasl2-modules-db:armhf (2.1.26.dfsg1-12) over (2.1.26.dfsg1-11) ... Preparing to unpack .../libsasl2-2_2.1.26.dfsg1-12_armhf.deb ... Unpacking libsasl2-2:armhf (2.1.26.dfsg1-12) over (2.1.26.dfsg1-11) ... Preparing to unpack .../tzdata_2014i-1_all.deb ... Unpacking tzdata (2014i-1) over (2014h-2) ... Setting up tzdata (2014i-1) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Oct 25 14:32:58 UTC 2014. Universal Time is now: Sat Oct 25 14:32:58 UTC 2014. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 11289 files and directories currently installed.) Preparing to unpack .../perl-modules_5.20.1-2_all.deb ... Unpacking perl-modules (5.20.1-2) over (5.20.1-1) ... Preparing to unpack .../ca-certificates_20141019_all.deb ... Unpacking ca-certificates (20141019) over (20140325) ... Preparing to unpack .../patch_2.7.1-6_armhf.deb ... Unpacking patch (2.7.1-6) over (2.7.1-5) ... Setting up libubsan0:armhf (4.9.1-19ubuntu1) ... Setting up libgomp1:armhf (4.9.1-19ubuntu1) ... Setting up libatomic1:armhf (4.9.1-19ubuntu1) ... Setting up libasan1:armhf (4.9.1-19ubuntu1) ... Setting up libgcc-4.9-dev:armhf (4.9.1-19ubuntu1) ... Setting up libgmp10:armhf (2:6.0.0+dfsg-6) ... Setting up cpp-4.9 (4.9.1-19ubuntu1) ... Setting up binutils (2.24.90.20141023-1ubuntu1) ... Setting up gcc-4.9 (4.9.1-19ubuntu1) ... Setting up libstdc++-4.9-dev:armhf (4.9.1-19ubuntu1) ... Setting up g++-4.9 (4.9.1-19ubuntu1) ... Setting up libp11-kit0:armhf (0.20.7-1) ... Setting up libsqlite3-0:armhf (3.8.7-1) ... Setting up libtasn1-6:armhf (4.2-2) ... Setting up libdrm2:armhf (2.4.58-2) ... Setting up libudev1:armhf (215-5ubuntu1) ... Setting up libplymouth4:armhf (0.9.0-0ubuntu8) ... Setting up udev (215-5ubuntu1) ... Installing new version of config file /etc/init.d/udev-finish ... A chroot environment has been detected, udev not started. update-initramfs: deferring update (trigger activated) Removing obsolete conffile /etc/udev/rules.d/README ... Setting up plymouth (0.9.0-0ubuntu8) ... update-initramfs: deferring update (trigger activated) Setting up libkrb5support0:armhf (1.12.1+dfsg-11) ... Setting up libk5crypto3:armhf (1.12.1+dfsg-11) ... Setting up libkrb5-3:armhf (1.12.1+dfsg-11) ... Setting up libgssapi-krb5-2:armhf (1.12.1+dfsg-11) ... Setting up libsasl2-modules-db:armhf (2.1.26.dfsg1-12) ... Setting up libsasl2-2:armhf (2.1.26.dfsg1-12) ... Setting up perl-modules (5.20.1-2) ... Setting up ca-certificates (20141019) ... Setting up patch (2.7.1-6) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... Processing triggers for initramfs-tools (0.103ubuntu8) ... Processing triggers for ca-certificates (20141019) ... Updating certificates in /etc/ssl/certs... 10 added, 5 removed; done. Running hooks in /etc/ca-certificates/update.d....done. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-6500031', 'armhf', 'vivid-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=vivid-proposed', '--purpose=PRIMARY', '--architecture=armhf', '--comp=universe', 'r-bioc-hilbertvis_1.24.0-1.dsc'] Initiating build PACKAGEBUILD-6500031 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 3.2.0-67-highbank #101-Ubuntu SMP PREEMPT Tue Jul 15 18:38:06 UTC 2014 armv7l Automatic build of r-bioc-hilbertvis_1.24.0-1 on kishi09 by sbuild/armhf 1.170.5 Build started at 20141025-1433 ****************************************************************************** r-bioc-hilbertvis_1.24.0-1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 9), cdbs, r-base-dev, r-cran-lattice Checking for already installed source dependencies... debhelper: missing cdbs: missing r-base-dev: missing r-cran-lattice: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper cdbs r-base-dev r-cran-lattice Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autoconf automake autotools-dev bsdmainutils dh-apparmor dh-translations file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-4.9 groff-base intltool intltool-debian libasprintf0c2 libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libencode-locale-perl libexpat1 libfile-listing-perl libfontconfig1 libfreetype6 libgfortran-4.9-dev libgfortran3 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libio-html-perl libio-socket-ssl-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic1 libncurses5-dev libnet-http-perl libnet-ssleay-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-dev libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline-dev libreadline6-dev libsigsegv2 libsm6 libtcl8.5 libthai-data libthai0 libtiff5 libtinfo-dev libtk8.5 libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2 libxrender1 libxss1 libxt6 m4 man-db mime-support netbase po-debconf python python-minimal python-scour python2.7 python2.7-minimal r-base-core ucf unzip x11-common xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc libtool wamerican wordlist whois vacation devscripts dh-make apparmor-easyprof gettext-doc gfortran-multilib gfortran-doc gfortran-4.9-multilib gfortran-4.9-doc libgfortran3-dbg groff libdata-dump-perl libcrypt-ssleay-perl liblzma-doc ncurses-doc readline-doc tcl8.5 tk8.5 libauthen-ntlm-perl less www-browser libmail-box-perl python-doc python-tk python-rsvg python-cairo python2.7-doc binfmt-support r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo gvfs-bin Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xdg-user-dirs libhtml-format-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl xml-core libmail-sendmail-perl r-recommended r-doc-html libfile-mimeinfo-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autotools-dev bsdmainutils cdbs debhelper dh-apparmor dh-translations file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-4.9 groff-base intltool intltool-debian libasprintf0c2 libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libdatrie1 libencode-locale-perl libexpat1 libfile-listing-perl libfontconfig1 libfreetype6 libgfortran-4.9-dev libgfortran3 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libio-html-perl libio-socket-ssl-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic1 libncurses5-dev libnet-http-perl libnet-ssleay-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre3-dev libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-dev libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline-dev libreadline6-dev libsigsegv2 libsm6 libtcl8.5 libthai-data libthai0 libtiff5 libtinfo-dev libtk8.5 libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2 libxrender1 libxss1 libxt6 m4 man-db mime-support netbase po-debconf python python-minimal python-scour python2.7 python2.7-minimal r-base-core r-base-dev r-cran-lattice ucf unzip x11-common xdg-utils zip zlib1g-dev 0 upgraded, 121 newly installed, 0 to remove and 0 not upgraded. Need to get 47.5 MB of archives. After this operation, 125 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ vivid/main libexpat1 armhf 2.1.0-6ubuntu1 [52.5 kB] Get:2 http://ftpmaster.internal/ubuntu/ vivid/main libmagic1 armhf 1:5.19-1ubuntu1.1 [198 kB] Get:3 http://ftpmaster.internal/ubuntu/ vivid/main libasprintf0c2 armhf 0.19.2-2ubuntu1 [6084 B] Get:4 http://ftpmaster.internal/ubuntu/ vivid/main libglib2.0-0 armhf 2.42.0-2 [957 kB] Get:5 http://ftpmaster.internal/ubuntu/ vivid/main libpipeline1 armhf 1.3.1-1 [20.4 kB] Get:6 http://ftpmaster.internal/ubuntu/ vivid/main libxau6 armhf 1:1.0.8-1 [7324 B] Get:7 http://ftpmaster.internal/ubuntu/ vivid/main libxdmcp6 armhf 1:1.1.1-1build1 [9700 B] Get:8 http://ftpmaster.internal/ubuntu/ vivid/main libxcb1 armhf 1.10-2ubuntu1 [33.1 kB] Get:9 http://ftpmaster.internal/ubuntu/ vivid/main libx11-data all 2:1.6.2-2ubuntu2 [112 kB] Get:10 http://ftpmaster.internal/ubuntu/ vivid/main libx11-6 armhf 2:1.6.2-2ubuntu2 [508 kB] Get:11 http://ftpmaster.internal/ubuntu/ vivid/main libxext6 armhf 2:1.3.3-1 [25.1 kB] Get:12 http://ftpmaster.internal/ubuntu/ vivid/main libxml2 armhf 2.9.1+dfsg1-4ubuntu1 [496 kB] Get:13 http://ftpmaster.internal/ubuntu/ vivid/main groff-base armhf 1.22.2-8 [1039 kB] Get:14 http://ftpmaster.internal/ubuntu/ vivid/main bsdmainutils armhf 9.0.5ubuntu1 [195 kB] Get:15 http://ftpmaster.internal/ubuntu/ vivid/main man-db armhf 2.7.0.2-2 [839 kB] Get:16 http://ftpmaster.internal/ubuntu/ vivid/main fonts-dejavu-core all 2.34-1ubuntu1 [1024 kB] Get:17 http://ftpmaster.internal/ubuntu/ vivid/main ucf all 3.0030 [55.5 kB] Get:18 http://ftpmaster.internal/ubuntu/ vivid/main fontconfig-config all 2.11.1-0ubuntu3 [48.7 kB] Get:19 http://ftpmaster.internal/ubuntu/ vivid/main libfreetype6 armhf 2.5.2-2ubuntu1 [267 kB] Get:20 http://ftpmaster.internal/ubuntu/ vivid/main libfontconfig1 armhf 2.11.1-0ubuntu3 [109 kB] Get:21 http://ftpmaster.internal/ubuntu/ vivid/main libpixman-1-0 armhf 0.32.4-1ubuntu1 [160 kB] Get:22 http://ftpmaster.internal/ubuntu/ vivid/main libxcb-render0 armhf 1.10-2ubuntu1 [10.3 kB] Get:23 http://ftpmaster.internal/ubuntu/ vivid/main libxcb-shm0 armhf 1.10-2ubuntu1 [5340 B] Get:24 http://ftpmaster.internal/ubuntu/ vivid/main libxrender1 armhf 1:0.9.8-1 [17.1 kB] Get:25 http://ftpmaster.internal/ubuntu/ vivid/main libcairo2 armhf 1.13.0~20140204-0ubuntu1 [465 kB] Get:26 http://ftpmaster.internal/ubuntu/ vivid/main libcroco3 armhf 0.6.8-3 [72.0 kB] Get:27 http://ftpmaster.internal/ubuntu/ vivid/main libdatrie1 armhf 0.2.8-1 [13.4 kB] Get:28 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libgfortran3 armhf 4.9.1-19ubuntu1 [164 kB] Get:29 http://ftpmaster.internal/ubuntu/ vivid/main libgraphite2-3 armhf 1.2.4-3ubuntu1 [44.1 kB] Get:30 http://ftpmaster.internal/ubuntu/ vivid/main libharfbuzz0b armhf 0.9.35-1 [114 kB] Get:31 http://ftpmaster.internal/ubuntu/ vivid/main x11-common all 1:7.7+7ubuntu2 [62.5 kB] Get:32 http://ftpmaster.internal/ubuntu/ vivid/main libice6 armhf 2:1.0.9-1 [32.7 kB] Get:33 http://ftpmaster.internal/ubuntu/ vivid/main libjpeg-turbo8 armhf 1.3.0-0ubuntu2 [85.2 kB] Get:34 http://ftpmaster.internal/ubuntu/ vivid/main libthai-data all 0.1.21-1 [131 kB] Get:35 http://ftpmaster.internal/ubuntu/ vivid/main libthai0 armhf 0.1.21-1 [14.4 kB] Get:36 http://ftpmaster.internal/ubuntu/ vivid/main fontconfig armhf 2.11.1-0ubuntu3 [175 kB] Get:37 http://ftpmaster.internal/ubuntu/ vivid/main libpango-1.0-0 armhf 1.36.6-1 [136 kB] Get:38 http://ftpmaster.internal/ubuntu/ vivid/main libpangoft2-1.0-0 armhf 1.36.6-1 [28.1 kB] Get:39 http://ftpmaster.internal/ubuntu/ vivid/main libpangocairo-1.0-0 armhf 1.36.6-1 [17.6 kB] Get:40 http://ftpmaster.internal/ubuntu/ vivid/main libpaper1 armhf 1.1.24+nmu2ubuntu3 [12.8 kB] Get:41 http://ftpmaster.internal/ubuntu/ vivid/main libpcrecpp0 armhf 1:8.35-3ubuntu1 [13.5 kB] Get:42 http://ftpmaster.internal/ubuntu/ vivid/main libsigsegv2 armhf 2.10-4 [13.3 kB] Get:43 http://ftpmaster.internal/ubuntu/ vivid/main libsm6 armhf 2:1.2.2-1 [13.9 kB] Get:44 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vivid-proposed/main gfortran-4.9 armhf 4.9.1-19ubuntu1 [4563 kB] Get:98 http://ftpmaster.internal/ubuntu/ vivid/main gfortran armhf 4:4.9.1-4ubuntu2 [1366 B] Get:99 http://ftpmaster.internal/ubuntu/ vivid/main libblas3 armhf 1.2.20110419-7ubuntu1 [121 kB] Get:100 http://ftpmaster.internal/ubuntu/ vivid/main libblas-dev armhf 1.2.20110419-7ubuntu1 [116 kB] Get:101 http://ftpmaster.internal/ubuntu/ vivid/main libbz2-dev armhf 1.0.6-5ubuntu5 [28.6 kB] Get:102 http://ftpmaster.internal/ubuntu/ vivid/main libjpeg-turbo8-dev armhf 1.3.0-0ubuntu2 [215 kB] Get:103 http://ftpmaster.internal/ubuntu/ vivid/main libjpeg8-dev armhf 8c-2ubuntu8 [1554 B] Get:104 http://ftpmaster.internal/ubuntu/ vivid/main libjpeg-dev armhf 8c-2ubuntu8 [1554 B] Get:105 http://ftpmaster.internal/ubuntu/ vivid/main liblapack3 armhf 3.5.0-4 [1451 kB] Get:106 http://ftpmaster.internal/ubuntu/ vivid/main liblapack-dev armhf 3.5.0-4 [1491 kB] Get:107 http://ftpmaster.internal/ubuntu/ vivid/main libtinfo-dev armhf 5.9+20140712-2ubuntu1 [66.8 kB] Get:108 http://ftpmaster.internal/ubuntu/ vivid/main libncurses5-dev armhf 5.9+20140712-2ubuntu1 [154 kB] Get:109 http://ftpmaster.internal/ubuntu/ vivid/main libpaper-utils armhf 1.1.24+nmu2ubuntu3 [8002 B] Get:110 http://ftpmaster.internal/ubuntu/ vivid/main libpcre3-dev armhf 1:8.35-3ubuntu1 [312 kB] Get:111 http://ftpmaster.internal/ubuntu/ vivid/main zlib1g-dev armhf 1:1.2.8.dfsg-1ubuntu1 [176 kB] Get:112 http://ftpmaster.internal/ubuntu/ vivid/main libpng12-dev armhf 1.2.51-0ubuntu3 [200 kB] Get:113 http://ftpmaster.internal/ubuntu/ vivid/main libreadline6-dev armhf 6.3-8ubuntu1 [109 kB] Get:114 http://ftpmaster.internal/ubuntu/ vivid/main libreadline-dev armhf 6.3-8ubuntu1 [1042 B] Get:115 http://ftpmaster.internal/ubuntu/ vivid/main zip armhf 3.0-8 [244 kB] Get:116 http://ftpmaster.internal/ubuntu/ vivid/main unzip armhf 6.0-12ubuntu1 [150 kB] Get:117 http://ftpmaster.internal/ubuntu/ vivid/main xdg-utils all 1.1.0~rc1-2ubuntu8 [54.1 kB] Get:118 http://ftpmaster.internal/ubuntu/ vivid/universe r-base-core armhf 3.1.1-1 [19.5 MB] Get:119 http://ftpmaster.internal/ubuntu/ vivid/main liblzma-dev armhf 5.1.1alpha+20120614-2ubuntu2 [130 kB] Get:120 http://ftpmaster.internal/ubuntu/ vivid/universe r-base-dev all 3.1.1-1 [4074 B] Get:121 http://ftpmaster.internal/ubuntu/ vivid/universe r-cran-lattice armhf 0.20-29-1 [702 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 47.5 MB in 6s (7102 kB/s) Selecting previously unselected package libexpat1:armhf. (Reading database ... 11294 files and directories currently installed.) Preparing to unpack .../libexpat1_2.1.0-6ubuntu1_armhf.deb ... Unpacking libexpat1:armhf (2.1.0-6ubuntu1) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../libmagic1_1%3a5.19-1ubuntu1.1_armhf.deb ... Unpacking libmagic1:armhf (1:5.19-1ubuntu1.1) ... Selecting previously unselected package libasprintf0c2:armhf. Preparing to unpack .../libasprintf0c2_0.19.2-2ubuntu1_armhf.deb ... Unpacking libasprintf0c2:armhf (0.19.2-2ubuntu1) ... Selecting previously unselected package libglib2.0-0:armhf. Preparing to unpack .../libglib2.0-0_2.42.0-2_armhf.deb ... Unpacking libglib2.0-0:armhf (2.42.0-2) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../libpipeline1_1.3.1-1_armhf.deb ... Unpacking libpipeline1:armhf (1.3.1-1) ... Selecting previously unselected package libxau6:armhf. Preparing to unpack .../libxau6_1%3a1.0.8-1_armhf.deb ... 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Setting up libxau6:armhf (1:1.0.8-1) ... Setting up libxdmcp6:armhf (1:1.1.1-1build1) ... Setting up libxcb1:armhf (1.10-2ubuntu1) ... Setting up libx11-data (2:1.6.2-2ubuntu2) ... Setting up libx11-6:armhf (2:1.6.2-2ubuntu2) ... Setting up libxext6:armhf (2:1.3.3-1) ... Setting up libxml2:armhf (2.9.1+dfsg1-4ubuntu1) ... Setting up groff-base (1.22.2-8) ... Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.7.0.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up fonts-dejavu-core (2.34-1ubuntu1) ... Setting up ucf (3.0030) ... Setting up fontconfig-config (2.11.1-0ubuntu3) ... Setting up libfreetype6:armhf (2.5.2-2ubuntu1) ... Setting up libfontconfig1:armhf (2.11.1-0ubuntu3) ... Setting up libpixman-1-0:armhf (0.32.4-1ubuntu1) ... Setting up libxcb-render0:armhf (1.10-2ubuntu1) ... Setting up libxcb-shm0:armhf (1.10-2ubuntu1) ... Setting up libxrender1:armhf (1:0.9.8-1) ... Setting up libcairo2:armhf (1.13.0~20140204-0ubuntu1) ... Setting up libcroco3:armhf (0.6.8-3) ... Setting up libdatrie1:armhf (0.2.8-1) ... Setting up libgfortran3:armhf (4.9.1-19ubuntu1) ... Setting up libgraphite2-3:armhf (1.2.4-3ubuntu1) ... Setting up libharfbuzz0b:armhf (0.9.35-1) ... Setting up x11-common (1:7.7+7ubuntu2) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:armhf (2:1.0.9-1) ... Setting up libjpeg-turbo8:armhf (1.3.0-0ubuntu2) ... Setting up libthai-data (0.1.21-1) ... Setting up libthai0:armhf (0.1.21-1) ... Setting up fontconfig (2.11.1-0ubuntu3) ... Regenerating fonts cache... done. Setting up libpango-1.0-0:armhf (1.36.6-1) ... Setting up libpangoft2-1.0-0:armhf (1.36.6-1) ... 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Toolchain package versions: libc6-dev_2.19-10ubuntu2 make_4.0-8 dpkg-dev_1.17.13ubuntu1 gcc-4.9_4.9.1-19ubuntu1 g++-4.9_4.9.1-19ubuntu1 binutils_2.24.90.20141023-1ubuntu1 libstdc++-4.9-dev_4.9.1-19ubuntu1 libstdc++6_4.9.1-19ubuntu1 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::Quilt gpgv: Signature made Thu Oct 16 09:14:25 2014 UTC using RSA key ID D1C646D1 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./r-bioc-hilbertvis_1.24.0-1.dsc dpkg-source: info: extracting r-bioc-hilbertvis in r-bioc-hilbertvis-1.24.0 dpkg-source: info: unpacking r-bioc-hilbertvis_1.24.0.orig.tar.gz dpkg-source: info: unpacking r-bioc-hilbertvis_1.24.0-1.debian.tar.xz dpkg-buildpackage: source package r-bioc-hilbertvis dpkg-buildpackage: source version 1.24.0-1 dpkg-buildpackage: source distribution unstable dpkg-source --before-build r-bioc-hilbertvis-1.24.0 dpkg-buildpackage: host architecture armhf /usr/bin/fakeroot debian/rules clean test -x debian/rules dh_clean if test -d src; then \ find src -regex ".*\.o" | \ xargs --no-run-if-empty -r rm; \ fi rm -f config.log config.status debian/rules build-arch test -x debian/rules mkdir -p "." /usr/bin/fakeroot debian/rules binary-arch test -x debian/rules dh_testroot dh_prep dh_installdirs -A mkdir -p "." dh_installdirs usr/lib/R/site-library echo "R:Depends=r-base-core (>= 3.1.1-1)" >> debian/r-bioc-hilbertvis.substvars if test -f /usr/bin/xvfb-run; then \ xvfb-run -a \ R CMD INSTALL -l /build/buildd/r-bioc-hilbertvis-1.24.0/debian/r-bioc-hilbertvis/usr/lib/R/site-library --clean \ . ; \ else \ R CMD INSTALL -l /build/buildd/r-bioc-hilbertvis-1.24.0/debian/r-bioc-hilbertvis/usr/lib/R/site-library \ --clean . ;\ fi * installing *source* package 'HilbertVis' ... ** libs make[1]: Entering directory '/build/buildd/r-bioc-hilbertvis-1.24.0/src' gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c hilbert.c -o hilbert.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c make_wiggle_vector.c -o make_wiggle_vector.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c shrink_vector.c -o shrink_vector.o gcc -std=gnu99 -shared -Wl,-Bsymbolic-functions -Wl,-z,relro -o HilbertVis.so hilbert.o make_wiggle_vector.o shrink_vector.o -L/usr/lib/R/lib -lR make[1]: Leaving directory '/build/buildd/r-bioc-hilbertvis-1.24.0/src' make[1]: Entering directory '/build/buildd/r-bioc-hilbertvis-1.24.0/src' make[1]: Leaving directory '/build/buildd/r-bioc-hilbertvis-1.24.0/src' installing to /build/buildd/r-bioc-hilbertvis-1.24.0/debian/r-bioc-hilbertvis/usr/lib/R/site-library/HilbertVis/libs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (HilbertVis) rm -vf /build/buildd/r-bioc-hilbertvis-1.24.0/debian/r-bioc-hilbertvis/usr/lib/R/site-library/R.css \ /build/buildd/r-bioc-hilbertvis-1.24.0/debian/r-bioc-hilbertvis/usr/lib/R/site-library/HilbertVis/COPYING \ /build/buildd/r-bioc-hilbertvis-1.24.0/debian/r-bioc-hilbertvis/usr/lib/R/site-library/HilbertVis/LICENSE.txt if test -f debian/overrides; then \ install -d /build/buildd/r-bioc-hilbertvis-1.24.0/debian/r-bioc-hilbertvis/usr/share/lintian/overrides ; \ install -m 0644 debian/overrides \ /build/buildd/r-bioc-hilbertvis-1.24.0/debian/r-bioc-hilbertvis/usr/share/lintian/overrides/r-bioc-hilbertvis; \ fi Adding cdbs dependencies to debian/r-bioc-hilbertvis.substvars dh_installdirs -pr-bioc-hilbertvis dh_installdocs -pr-bioc-hilbertvis dh_installexamples -pr-bioc-hilbertvis dh_installman -pr-bioc-hilbertvis dh_installinfo -pr-bioc-hilbertvis dh_installmenu -pr-bioc-hilbertvis dh_installcron -pr-bioc-hilbertvis dh_installinit -pr-bioc-hilbertvis dh_installdebconf -pr-bioc-hilbertvis dh_installemacsen -pr-bioc-hilbertvis dh_installcatalogs -pr-bioc-hilbertvis dh_installpam -pr-bioc-hilbertvis dh_installlogrotate -pr-bioc-hilbertvis dh_installlogcheck -pr-bioc-hilbertvis dh_installchangelogs -pr-bioc-hilbertvis dh_installudev -pr-bioc-hilbertvis dh_lintian -pr-bioc-hilbertvis dh_bugfiles -pr-bioc-hilbertvis dh_install -pr-bioc-hilbertvis dh_link -pr-bioc-hilbertvis dh_installmime -pr-bioc-hilbertvis dh_installgsettings -pr-bioc-hilbertvis dh_strip -pr-bioc-hilbertvis dh_strip debug symbol extraction: not enabling -a because /CurrentlyBuilding exists dh_strip debug symbol extraction: all non-arch-all packages for this build platform armhf: r-bioc-hilbertvis dh_strip debug symbol extraction: packages to act on: r-bioc-hilbertvis dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: -is is deprecated; it is without effect dpkg-gencontrol: warning: -ip is deprecated; it is without effect dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package r-bioc-hilbertvis: unused substitution variable ${R:Depends} /usr/bin/pkg_create_dbgsym: building ddeb package dpkg-deb: building package `r-bioc-hilbertvis-dbgsym' in `../r-bioc-hilbertvis-dbgsym_1.24.0-1_armhf.ddeb'. dh_compress -pr-bioc-hilbertvis dh_fixperms -pr-bioc-hilbertvis dh_makeshlibs -pr-bioc-hilbertvis dh_installdeb -pr-bioc-hilbertvis dh_perl -pr-bioc-hilbertvis dh_shlibdeps -pr-bioc-hilbertvis dh_gencontrol -pr-bioc-hilbertvis dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe # only call dh_scour for packages in main if grep -q '^Component:[[:space:]]*main' /CurrentlyBuilding 2>/dev/null; then dh_scour -pr-bioc-hilbertvis ; fi dh_md5sums -pr-bioc-hilbertvis dh_builddeb -pr-bioc-hilbertvis INFO: pkgstriptranslations version 121 pkgstriptranslations: processing r-bioc-hilbertvis (in debian/r-bioc-hilbertvis); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-bioc-hilbertvis/DEBIAN/control, package r-bioc-hilbertvis, directory debian/r-bioc-hilbertvis ** Processing: ./usr/share/doc/r-bioc-hilbertvis/examples/vignettes/ThreeChTest.png 513x514 pixels, 4x8 bits/pixel, RGB+alpha Reducing image to 3x8 bits/pixel, RGB Input IDAT size = 19986 bytes Input file size = 20138 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15483 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 1 zc = 9 zm = 8 zs = 1 f = 1 zc = 1 zm = 8 zs = 2 f = 1 zc = 9 zm = 8 zs = 3 f = 1 zc = 9 zm = 8 zs = 0 f = 2 zc = 9 zm = 8 zs = 1 f = 2 zc = 1 zm = 8 zs = 2 f = 2 zc = 9 zm = 8 zs = 3 f = 2 zc = 9 zm = 8 zs = 0 f = 3 zc = 9 zm = 8 zs = 1 f = 3 zc = 1 zm = 8 zs = 2 f = 3 zc = 9 zm = 8 zs = 3 f = 3 zc = 9 zm = 8 zs = 0 f = 4 zc = 9 zm = 8 zs = 1 f = 4 zc = 1 zm = 8 zs = 2 f = 4 zc = 9 zm = 8 zs = 3 f = 4 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15483 Output IDAT size = 15483 bytes (4503 bytes decrease) Output file size = 15611 bytes (4527 bytes = 22.48% decrease) 15611 14766 94% ./usr/share/doc/r-bioc-hilbertvis/examples/vignettes/ThreeChTest.png 15611 14766 94% pkgstripfiles: PNG optimization for package r-bioc-hilbertvis took 40 s dpkg-deb: warning: 'debian/r-bioc-hilbertvis/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `r-bioc-hilbertvis' in `../r-bioc-hilbertvis_1.24.0-1_armhf.deb'. dpkg-genchanges -B -mUbuntu/armhf Build Daemon >../r-bioc-hilbertvis_1.24.0-1_armhf.changes dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build r-bioc-hilbertvis-1.24.0 dpkg-buildpackage: binary-only upload (no source included) ****************************************************************************** Build finished at 20141025-1436 Publishing debug debs. chroot-autobuild/build/buildd/r-bioc-hilbertvis_1.24.0-1_armhf.deb: new debian package, version 2.0. size 966030 bytes: control archive= 2061 bytes. 998 bytes, 20 lines control 3214 bytes, 37 lines md5sums Package: r-bioc-hilbertvis Version: 1.24.0-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian-Med Packaging Team Installed-Size: 1470 Depends: libc6 (>= 2.4), r-base-core (>= 3.1.1-1), r-cran-lattice Section: math Priority: optional Homepage: http://www.ebi.ac.uk/huber-srv/hilbert Description: GNU R package to visualise long vector data This tool allows one to display very long data vectors in a space-efficient manner, by organising it along a 2D Hilbert curve. The user can then visually judge the large scale structure and distribution of features simultaenously with the rough shape and intensity of individual features. . In bioinformatics, a typical use case is ChIP-Chip and ChIP-Seq, or basically all the kinds of genomic data, that are conventionally displayed as quantitative track ("wiggle data") in genome browsers such as those provided by Ensembl or UCSC. chroot-autobuild/build/buildd/r-bioc-hilbertvis_1.24.0-1_armhf.deb: drwxr-xr-x root/root 0 2014-10-25 14:35 ./ drwxr-xr-x root/root 0 2014-10-25 14:35 ./usr/ drwxr-xr-x root/root 0 2014-10-25 14:35 ./usr/lib/ drwxr-xr-x root/root 0 2014-10-25 14:35 ./usr/lib/R/ drwxr-xr-x root/root 0 2014-10-25 14:35 ./usr/lib/R/site-library/ drwxr-xr-x root/root 0 2014-10-25 14:35 ./usr/lib/R/site-library/HilbertVis/ -rw-r--r-- root/root 539 2014-10-25 14:35 ./usr/lib/R/site-library/HilbertVis/DESCRIPTION drwxr-xr-x root/root 0 2014-10-25 14:35 ./usr/lib/R/site-library/HilbertVis/doc/ -rw-r--r-- root/root 1222664 2014-10-25 14:35 ./usr/lib/R/site-library/HilbertVis/doc/HilbertVis.pdf -rw-r--r-- root/root 1207 2014-10-25 14:35 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2014-10-25 14:35 ./usr/lib/R/site-library/HilbertVis/help/paths.rds -rw-r--r-- root/root 339 2014-10-25 14:35 ./usr/lib/R/site-library/HilbertVis/help/HilbertVis.rdx drwxr-xr-x root/root 0 2014-10-25 14:35 ./usr/lib/R/site-library/HilbertVis/R/ -rw-r--r-- root/root 1056 2014-10-25 14:35 ./usr/lib/R/site-library/HilbertVis/R/HilbertVis -rw-r--r-- root/root 7091 2014-10-25 14:35 ./usr/lib/R/site-library/HilbertVis/R/HilbertVis.rdb -rw-r--r-- root/root 397 2014-10-25 14:35 ./usr/lib/R/site-library/HilbertVis/R/HilbertVis.rdx drwxr-xr-x root/root 0 2014-10-25 14:35 ./usr/share/ drwxr-xr-x root/root 0 2014-10-25 14:35 ./usr/share/doc/ drwxr-xr-x root/root 0 2014-10-25 14:35 ./usr/share/doc/r-bioc-hilbertvis/ -rw-r--r-- root/root 262 2014-07-29 07:43 ./usr/share/doc/r-bioc-hilbertvis/README.test drwxr-xr-x root/root 0 2014-10-25 14:35 ./usr/share/doc/r-bioc-hilbertvis/examples/ drwxr-xr-x root/root 0 2014-10-25 14:36 ./usr/share/doc/r-bioc-hilbertvis/examples/vignettes/ -rw-r--r-- root/root 290 2014-10-13 22:10 ./usr/share/doc/r-bioc-hilbertvis/examples/vignettes/Makefile -rw-r--r-- root/root 22314 2014-10-13 22:10 ./usr/share/doc/r-bioc-hilbertvis/examples/vignettes/ThreeChTest.pdf.gz -rw-r--r-- root/root 9036 2014-10-13 22:10 ./usr/share/doc/r-bioc-hilbertvis/examples/vignettes/simon2.bst.gz -rw-r--r-- root/root 6993 2014-10-13 22:10 ./usr/share/doc/r-bioc-hilbertvis/examples/vignettes/HilbertVis.Rnw.gz -rw-r--r-- root/root 7267 2014-10-14 01:07 ./usr/share/doc/r-bioc-hilbertvis/examples/vignettes/HilbertVis.tex.gz -rw-r--r-- root/root 4056 2014-10-13 22:10 ./usr/share/doc/r-bioc-hilbertvis/examples/vignettes/hilbert.bib -rw-r--r-- root/root 66999 2014-10-13 22:10 ./usr/share/doc/r-bioc-hilbertvis/examples/vignettes/HilbertDisplay_GUI.pdf.gz -rw-r--r-- root/root 14766 2014-10-25 14:36 ./usr/share/doc/r-bioc-hilbertvis/examples/vignettes/ThreeChTest.png -rw-r--r-- root/root 411 2014-10-16 08:56 ./usr/share/doc/r-bioc-hilbertvis/run-unit-test -rw-r--r-- root/root 1260 2014-10-16 09:09 ./usr/share/doc/r-bioc-hilbertvis/copyright -rw-r--r-- root/root 1080 2014-10-16 09:09 ./usr/share/doc/r-bioc-hilbertvis/changelog.Debian.gz r-bioc-hilbertvis_1.24.0-1_armhf.changes: Format: 1.8 Date: Thu, 16 Oct 2014 10:49:06 +0200 Source: r-bioc-hilbertvis Binary: r-bioc-hilbertvis Architecture: armhf Version: 1.24.0-1 Distribution: vivid-proposed Urgency: medium Maintainer: Ubuntu/armhf Build Daemon Changed-By: Andreas Tille Description: r-bioc-hilbertvis - GNU R package to visualise long vector data Changes: r-bioc-hilbertvis (1.24.0-1) unstable; urgency=medium . * New upstream version * cme fix dpkg-control * add autopkgtest based on vignettes * Some DEP5 fixes Checksums-Sha1: 83ecf24449c9cc384327c3c1c42f57d93960875e 966030 r-bioc-hilbertvis_1.24.0-1_armhf.deb Checksums-Sha256: 6ec5adbbe8444a7fcefd4f48d3c9d65fbaa0514d2e413e3ed7595d66feda1f54 966030 r-bioc-hilbertvis_1.24.0-1_armhf.deb Files: 55dcee404fe8d71b97c84e70822c7157 966030 math optional r-bioc-hilbertvis_1.24.0-1_armhf.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20141025-1436 Build needed 00:01:15, 4144k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-6500031'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-6500031/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-6500031'] Unmounting chroot for build PACKAGEBUILD-6500031... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-6500031'] Removing build PACKAGEBUILD-6500031