https://launchpad.net/ubuntu/+source/r-bioc-ioniser/2.18.0+dfsg-1/+build/22452397 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lcy01-amd64-003 4.15.0-162-generic #170-Ubuntu SMP Mon Oct 18 11:38:05 UTC 2021 x86_64 Buildd toolchain package versions: launchpad-buildd_204~508~ubuntu18.04.1 python3-lpbuildd_204~508~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.9 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 26 Nov 08:44:42 ntpdate[1874]: adjust time server 10.211.37.1 offset -0.005927 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=jammy --arch=amd64 PACKAGEBUILD-22452397 --image-type chroot /home/buildd/filecache-default/b0c128df17a460089eca69348f06144377489985 Creating target for build PACKAGEBUILD-22452397 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=jammy --arch=amd64 PACKAGEBUILD-22452397 Starting target for build PACKAGEBUILD-22452397 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=jammy --arch=amd64 PACKAGEBUILD-22452397 'deb http://ftpmaster.internal/ubuntu jammy main universe' 'deb http://ftpmaster.internal/ubuntu jammy-security main universe' 'deb http://ftpmaster.internal/ubuntu jammy-updates main universe' 'deb http://ftpmaster.internal/ubuntu jammy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-22452397 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=jammy --arch=amd64 PACKAGEBUILD-22452397 Updating target for build PACKAGEBUILD-22452397 Get:1 http://ftpmaster.internal/ubuntu jammy InRelease [270 kB] Get:2 http://ftpmaster.internal/ubuntu jammy-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed InRelease [121 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main amd64 Packages [1399 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main Translation-en [511 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/universe amd64 Packages [13.8 MB] Get:8 http://ftpmaster.internal/ubuntu jammy/universe Translation-en [5556 kB] Get:9 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 Packages [174 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main Translation-en [60.6 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/universe amd64 Packages [931 kB] Get:12 http://ftpmaster.internal/ubuntu jammy-proposed/universe Translation-en [432 kB] Fetched 23.4 MB in 6s (3805 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libsepol1 Use 'sudo apt autoremove' to remove it. The following packages will be REMOVED: libsemanage1* The following NEW packages will be installed: libsemanage2 libsepol2 libssl3 The following packages will be upgraded: apt base-files binutils binutils-common binutils-x86-64-linux-gnu bsdutils ca-certificates cpp-11 dash debconf debianutils e2fsprogs g++-11 gcc-11 gcc-11-base gpg gpg-agent gpgconf gpgv grep libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libattr1 libbinutils libblkid1 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libext2fs2 libgcc-11-dev libgcc-s1 libgcrypt20 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libidn2-0 libip4tc2 libisl23 libitm1 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 liblsan0 libmount1 libmpc3 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libquadmath0 libseccomp2 libselinux1 libsemanage-common libsmartcols1 libsqlite3-0 libss2 libstdc++-11-dev libstdc++6 libtasn1-6 libtinfo6 libtsan0 libubsan1 libuuid1 libzstd1 linux-libc-dev lockfile-progs login logsave make mount ncurses-base ncurses-bin openssl passwd pkgbinarymangler sed sensible-utils tzdata usrmerge util-linux 93 upgraded, 3 newly installed, 1 to remove and 0 not upgraded. Need to get 75.7 MB of archives. After this operation, 355 MB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu jammy/main amd64 debconf all 1.5.79 [126 kB] Get:2 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libpam0g amd64 1.4.0-10ubuntu1 [61.4 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libcrypt-dev amd64 1:4.4.26-1 [112 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libcrypt1 amd64 1:4.4.26-1 [82.1 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main amd64 base-files amd64 12ubuntu2 [63.3 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main amd64 bsdutils amd64 1:2.37.2-4ubuntu1 [80.9 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/main amd64 debianutils amd64 5.5-1 [77.5 kB] Get:8 http://ftpmaster.internal/ubuntu jammy/main amd64 dash amd64 0.5.11+git20210903+057cd650a4ed-3 [91.8 kB] Get:9 http://ftpmaster.internal/ubuntu jammy/main amd64 grep amd64 3.7-1 [156 kB] Get:10 http://ftpmaster.internal/ubuntu jammy/main amd64 login amd64 1:4.8.1-1ubuntu10 [188 kB] Get:11 http://ftpmaster.internal/ubuntu jammy/main amd64 libncurses6 amd64 6.3-1 [111 kB] Get:12 http://ftpmaster.internal/ubuntu jammy/main amd64 libncursesw6 amd64 6.3-1 [147 kB] Get:13 http://ftpmaster.internal/ubuntu jammy/main amd64 libtinfo6 amd64 6.3-1 [104 kB] Get:14 http://ftpmaster.internal/ubuntu jammy/main amd64 ncurses-bin amd64 6.3-1 [184 kB] Get:15 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 sed amd64 4.8-1 [188 kB] Get:16 http://ftpmaster.internal/ubuntu jammy/main amd64 libblkid1 amd64 2.37.2-4ubuntu1 [103 kB] Get:17 http://ftpmaster.internal/ubuntu jammy/main amd64 libpcre2-8-0 amd64 10.39-3 [220 kB] Get:18 http://ftpmaster.internal/ubuntu jammy/main amd64 libselinux1 amd64 3.3-1 [74.6 kB] Get:19 http://ftpmaster.internal/ubuntu jammy/main amd64 libmount1 amd64 2.37.2-4ubuntu1 [122 kB] Get:20 http://ftpmaster.internal/ubuntu jammy/main amd64 util-linux amd64 2.37.2-4ubuntu1 [1063 kB] Get:21 http://ftpmaster.internal/ubuntu jammy/main amd64 ncurses-base all 6.3-1 [19.9 kB] Get:22 http://ftpmaster.internal/ubuntu jammy/main amd64 libgpg-error0 amd64 1.42-3 [68.1 kB] Get:23 http://ftpmaster.internal/ubuntu jammy/main amd64 libgcrypt20 amd64 1.9.4-3ubuntu2 [515 kB] Get:24 http://ftpmaster.internal/ubuntu jammy/main amd64 libcc1-0 amd64 11.2.0-12ubuntu1 [53.8 kB] Get:25 http://ftpmaster.internal/ubuntu jammy/main amd64 gcc-11-base amd64 11.2.0-12ubuntu1 [20.7 kB] Get:26 http://ftpmaster.internal/ubuntu jammy/main amd64 libgcc-s1 amd64 11.2.0-12ubuntu1 [45.6 kB] Get:27 http://ftpmaster.internal/ubuntu jammy/main amd64 libgomp1 amd64 11.2.0-12ubuntu1 [117 kB] Get:28 http://ftpmaster.internal/ubuntu jammy/main amd64 libitm1 amd64 11.2.0-12ubuntu1 [30.0 kB] Get:29 http://ftpmaster.internal/ubuntu jammy/main amd64 libatomic1 amd64 11.2.0-12ubuntu1 [9998 B] Get:30 http://ftpmaster.internal/ubuntu jammy/main amd64 libasan6 amd64 11.2.0-12ubuntu1 [2282 kB] Get:31 http://ftpmaster.internal/ubuntu jammy/main amd64 liblsan0 amd64 11.2.0-12ubuntu1 [976 kB] Get:32 http://ftpmaster.internal/ubuntu jammy/main amd64 libtsan0 amd64 11.2.0-12ubuntu1 [2259 kB] Get:33 http://ftpmaster.internal/ubuntu jammy/main amd64 libubsan1 amd64 11.2.0-12ubuntu1 [922 kB] Get:34 http://ftpmaster.internal/ubuntu jammy/main amd64 libquadmath0 amd64 11.2.0-12ubuntu1 [154 kB] Get:35 http://ftpmaster.internal/ubuntu jammy/main amd64 g++-11 amd64 11.2.0-12ubuntu1 [11.4 MB] Get:36 http://ftpmaster.internal/ubuntu jammy/main amd64 libstdc++-11-dev amd64 11.2.0-12ubuntu1 [2098 kB] Get:37 http://ftpmaster.internal/ubuntu jammy/main amd64 libgcc-11-dev amd64 11.2.0-12ubuntu1 [2532 kB] Get:38 http://ftpmaster.internal/ubuntu jammy/main amd64 gcc-11 amd64 11.2.0-12ubuntu1 [20.1 MB] Get:39 http://ftpmaster.internal/ubuntu jammy/main amd64 cpp-11 amd64 11.2.0-12ubuntu1 [9962 kB] Get:40 http://ftpmaster.internal/ubuntu jammy/main amd64 libstdc++6 amd64 11.2.0-12ubuntu1 [656 kB] Get:41 http://ftpmaster.internal/ubuntu jammy/main amd64 libisl23 amd64 0.24-2 [728 kB] Get:42 http://ftpmaster.internal/ubuntu jammy/main amd64 libmpc3 amd64 1.2.1-1 [46.9 kB] Get:43 http://ftpmaster.internal/ubuntu jammy/main amd64 libzstd1 amd64 1.4.8+dfsg-3 [324 kB] Get:44 http://ftpmaster.internal/ubuntu jammy/main amd64 libctf0 amd64 2.37-10ubuntu1 [103 kB] Get:45 http://ftpmaster.internal/ubuntu jammy/main amd64 libctf-nobfd0 amd64 2.37-10ubuntu1 [106 kB] Get:46 http://ftpmaster.internal/ubuntu jammy/main amd64 libbinutils amd64 2.37-10ubuntu1 [653 kB] Get:47 http://ftpmaster.internal/ubuntu jammy/main amd64 binutils-common amd64 2.37-10ubuntu1 [213 kB] Get:48 http://ftpmaster.internal/ubuntu jammy/main amd64 binutils amd64 2.37-10ubuntu1 [3192 B] Get:49 http://ftpmaster.internal/ubuntu jammy/main amd64 binutils-x86-64-linux-gnu amd64 2.37-10ubuntu1 [2314 kB] Get:50 http://ftpmaster.internal/ubuntu jammy/main amd64 libapt-pkg6.0 amd64 2.3.13 [904 kB] Get:51 http://ftpmaster.internal/ubuntu jammy/main amd64 gpgv amd64 2.2.27-2ubuntu1 [137 kB] Get:52 http://ftpmaster.internal/ubuntu jammy/main amd64 libidn2-0 amd64 2.3.2-2 [66.5 kB] Get:53 http://ftpmaster.internal/ubuntu jammy/main amd64 libp11-kit0 amd64 0.24.0-5 [252 kB] Get:54 http://ftpmaster.internal/ubuntu jammy/main amd64 libtasn1-6 amd64 4.18.0-4 [42.9 kB] Get:55 http://ftpmaster.internal/ubuntu jammy/main amd64 libgnutls30 amd64 3.7.2-2ubuntu1 [957 kB] Get:56 http://ftpmaster.internal/ubuntu jammy/main amd64 libseccomp2 amd64 2.5.2-2ubuntu2 [48.3 kB] Get:57 http://ftpmaster.internal/ubuntu jammy/main amd64 apt amd64 2.3.13 [1387 kB] Get:58 http://ftpmaster.internal/ubuntu jammy/main amd64 libsepol2 amd64 3.3-1 [281 kB] Get:59 http://ftpmaster.internal/ubuntu jammy/main amd64 libsemanage-common all 3.3-1 [10.1 kB] Get:60 http://ftpmaster.internal/ubuntu jammy/main amd64 libsemanage2 amd64 3.3-1 [92.5 kB] Get:61 http://ftpmaster.internal/ubuntu jammy/main amd64 passwd amd64 1:4.8.1-1ubuntu10 [754 kB] Get:62 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libpam-modules-bin amd64 1.4.0-10ubuntu1 [37.4 kB] Get:63 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libpam-modules amd64 1.4.0-10ubuntu1 [280 kB] Get:64 http://ftpmaster.internal/ubuntu jammy/main amd64 logsave amd64 1.46.4-1ubuntu1 [10.9 kB] Get:65 http://ftpmaster.internal/ubuntu jammy/main amd64 libext2fs2 amd64 1.46.4-1ubuntu1 [209 kB] Get:66 http://ftpmaster.internal/ubuntu jammy/main amd64 e2fsprogs amd64 1.46.4-1ubuntu1 [589 kB] Get:67 http://ftpmaster.internal/ubuntu jammy/main amd64 mount amd64 2.37.2-4ubuntu1 [114 kB] Get:68 http://ftpmaster.internal/ubuntu jammy/main amd64 libattr1 amd64 1:2.5.1-1 [13.3 kB] Get:69 http://ftpmaster.internal/ubuntu jammy/main amd64 libcom-err2 amd64 1.46.4-1ubuntu1 [10.1 kB] Get:70 http://ftpmaster.internal/ubuntu jammy/main amd64 libk5crypto3 amd64 1.18.3-7 [86.2 kB] Get:71 http://ftpmaster.internal/ubuntu jammy/main amd64 libkrb5support0 amd64 1.18.3-7 [32.2 kB] Get:72 http://ftpmaster.internal/ubuntu jammy/main amd64 libkrb5-3 amd64 1.18.3-7 [355 kB] Get:73 http://ftpmaster.internal/ubuntu jammy/main amd64 libgssapi-krb5-2 amd64 1.18.3-7 [143 kB] Get:74 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libpam-runtime all 1.4.0-10ubuntu1 [40.2 kB] Get:75 http://ftpmaster.internal/ubuntu jammy/main amd64 libsmartcols1 amd64 2.37.2-4ubuntu1 [50.9 kB] Get:76 http://ftpmaster.internal/ubuntu jammy/main amd64 libuuid1 amd64 2.37.2-4ubuntu1 [23.8 kB] Get:77 http://ftpmaster.internal/ubuntu jammy/main amd64 libss2 amd64 1.46.4-1ubuntu1 [12.3 kB] Get:78 http://ftpmaster.internal/ubuntu jammy/main amd64 sensible-utils all 0.0.17 [20.1 kB] Get:79 http://ftpmaster.internal/ubuntu jammy/main amd64 usrmerge all 25ubuntu2 [54.7 kB] Get:80 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libssl3 amd64 3.0.0-1ubuntu1 [1896 kB] Get:81 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 openssl amd64 3.0.0-1ubuntu1 [1180 kB] Get:82 http://ftpmaster.internal/ubuntu jammy/main amd64 ca-certificates all 20211016 [148 kB] Get:83 http://ftpmaster.internal/ubuntu jammy/main amd64 libapparmor1 amd64 3.0.3-0ubuntu3 [37.8 kB] Get:84 http://ftpmaster.internal/ubuntu jammy/main amd64 libip4tc2 amd64 1.8.7-1ubuntu4 [19.8 kB] Get:85 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libkmod2 amd64 28-1ubuntu5 [48.0 kB] Get:86 http://ftpmaster.internal/ubuntu jammy/main amd64 libsqlite3-0 amd64 3.36.0-2 [641 kB] Get:87 http://ftpmaster.internal/ubuntu jammy/main amd64 tzdata all 2021e-1ubuntu1 [343 kB] Get:88 http://ftpmaster.internal/ubuntu jammy/main amd64 libgdbm6 amd64 1.22-1 [35.2 kB] Get:89 http://ftpmaster.internal/ubuntu jammy/main amd64 gpg amd64 2.2.27-2ubuntu1 [518 kB] Get:90 http://ftpmaster.internal/ubuntu jammy/main amd64 gpgconf amd64 2.2.27-2ubuntu1 [93.9 kB] Get:91 http://ftpmaster.internal/ubuntu jammy/main amd64 gpg-agent amd64 2.2.27-2ubuntu1 [209 kB] Get:92 http://ftpmaster.internal/ubuntu jammy/main amd64 libgdbm-compat4 amd64 1.22-1 [6450 B] 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RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-22452397 amd64 jammy-proposed -c chroot:build-PACKAGEBUILD-22452397 --arch=amd64 --dist=jammy-proposed --nolog -A r-bioc-ioniser_2.18.0+dfsg-1.dsc Initiating build PACKAGEBUILD-22452397 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-162-generic #170-Ubuntu SMP Mon Oct 18 11:38:05 UTC 2021 x86_64 sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on lcy01-amd64-003.buildd +==============================================================================+ | r-bioc-ioniser 2.18.0+dfsg-1 (amd64) Fri, 26 Nov 2021 08:46:12 +0000 | +==============================================================================+ Package: r-bioc-ioniser Version: 2.18.0+dfsg-1 Source Version: 2.18.0+dfsg-1 Distribution: jammy-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-22452397/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-bioc-ioniser_2.18.0+dfsg-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/r-bioc-ioniser-BryAGD/r-bioc-ioniser-2.18.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-ioniser-BryAGD' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-tN26Yn/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-tN26Yn/apt_archive ./ InRelease Get:2 copy:/<>/resolver-tN26Yn/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-tN26Yn/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-tN26Yn/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-tN26Yn/apt_archive ./ Packages [431 B] Fetched 1737 B in 0s (82.2 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libsepol1 Use 'apt autoremove' to remove it. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 652 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-tN26Yn/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [652 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 652 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13434 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-rhdf5, r-cran-dplyr, r-cran-magrittr, r-cran-tidyr, r-bioc-shortread, r-bioc-biostrings, r-cran-ggplot2, r-bioc-biocgenerics, r-bioc-xvector, r-cran-tibble, r-bioc-biocparallel, r-cran-bit64, r-cran-stringr, r-bioc-biocstyle, r-cran-knitr, r-cran-markdown Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-rhdf5, r-cran-dplyr, r-cran-magrittr, r-cran-tidyr, r-bioc-shortread, r-bioc-biostrings, r-cran-ggplot2, r-bioc-biocgenerics, r-bioc-xvector, r-cran-tibble, r-bioc-biocparallel, r-cran-bit64, r-cran-stringr, r-bioc-biocstyle, r-cran-knitr, r-cran-markdown dpkg-deb: building package 'sbuild-build-depends-r-bioc-ioniser-dummy' in '/<>/resolver-tN26Yn/apt_archive/sbuild-build-depends-r-bioc-ioniser-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-ioniser-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-tN26Yn/apt_archive ./ InRelease Get:2 copy:/<>/resolver-tN26Yn/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-tN26Yn/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-tN26Yn/apt_archive ./ Sources [616 B] Get:5 copy:/<>/resolver-tN26Yn/apt_archive ./ Packages [697 B] Fetched 2276 B in 0s (103 kB/s) Reading package lists... Reading package lists... Install r-bioc-ioniser build dependencies (apt-based resolver) -------------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libsepol1 Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils dctrl-tools debhelper debugedit dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax gettext gettext-base gfortran gfortran-11 groff-base hdf5-helpers icu-devtools intltool-debian libaec-dev libaec0 libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libblosc1 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libcmark-gfm-extensions0 libcmark-gfm0 libcurl3-gnutls libcurl4 libcurl4-openssl-dev libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdw1 libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-11-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu67 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 libldap-2.5-0 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libptexenc1 libreadline-dev librtmp1 libsasl2-2 libsasl2-modules-db libscalar-list-utils-perl libsigsegv2 libsm6 libsnappy1v5 libssh-4 libssl-dev libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libsynctex2 libsz2 libtcl8.6 libteckit0 libtexlua53 libtexluajit2 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libuv1 libvariable-magic-perl libwebp6 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxi6 libxml2 libxmu6 libxmuu1 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 littler m4 man-db node-html5shiv node-normalize.css pandoc pandoc-data pkg-config po-debconf r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biocstyle r-bioc-biostrings r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-rhtslib r-bioc-rsamtools r-bioc-s4vectors r-bioc-shortread r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-bookdown r-cran-cli r-cran-colorspace r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-hwriter r-cran-isoband r-cran-jpeg r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-png r-cran-promises r-cran-purrr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-rlang r-cran-rmarkdown r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-11-multilib gfortran-11-doc libcoarrays-dev groff liblapack-doc libboost-doc libboost1.74-doc libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev libcurl4-doc libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev libhdf5-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix libjs-mathjax-doc liblzma-doc ncurses-doc libscalar-number-perl readline-doc libssl-doc tcl8.6 tk8.6 libtool-doc gcj-jdk libbusiness-isbn-perl libwww-perl libcurl4-gnutls-dev m4-doc apparmor less www-browser nodejs texlive-latex-recommended texlive-xetex texlive-luatex pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin ghc php python ruby node-katex citation-style-language-styles libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo r-bioc-all r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc r-bioc-variantannotation r-cran-codetools r-cran-data.table r-cran-runit r-bioc-bsgenome r-bioc-genomicfeatures r-bioc-hdf5array r-bioc-genefilter r-bioc-delayedmatrixstats r-bioc-rtracklayer r-bioc-edger r-bioc-gviz r-bioc-annotationhub r-bioc-dexseq r-bioc-keggrest r-bioc-sparsematrixstats r-cran-testthat r-cran-mockery r-cran-tinytest r-bioc-graph r-bioc-biomart r-cran-remotes r-cran-curl r-cran-roxygen2 r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui r-cran-rsconnect r-cran-tufte r-cran-webshot r-cran-callr r-cran-covr r-cran-processx r-cran-ps r-cran-whoami r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-viridis r-cran-xml2 r-cran-bench r-cran-desc r-cran-broom r-cran-dbi r-cran-rmysql r-cran-rpostgresql r-cran-unitizer r-cran-forcats r-cran-r.utils r-cran-rsqlite r-cran-waldo r-cran-cairo r-cran-ragg r-cran-magick r-cran-sf r-cran-httr r-cran-plyr r-cran-rgl r-cran-reticulate r-cran-sass r-cran-tidyverse r-cran-getopt r-cran-formattable r-cran-survival r-cran-units r-cran-inline r-cran-xml r-cran-dygraphs r-cran-fs r-cran-dichromat r-cran-rmpi r-cran-rsprng r-cran-rlecuyer r-cran-blob r-cran-brio r-cran-hms r-cran-pkgbuild r-cran-pkgload r-cran-readr r-cran-zeallot r-cran-plm r-cran-zoo ghostscript gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-latex-base-doc Recommended packages: devscripts cme git-buildpackage curl | wget | lynx bzip2-doc libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libclone-perl javascript-common libldap-common libdevel-partialdump-perl libpng-tools publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl r-recommended r-doc-html r-cran-runit r-cran-batchjobs r-cran-doparallel r-cran-batchtools r-cran-rmpi r-cran-testthat r-bioc-biocversion r-cran-testit r-cran-mockery r-cran-decor r-cran-brio r-cran-progress r-cran-data.table r-cran-rsqlite r-cran-hms r-cran-dbplyr r-cran-codetools r-cran-survival r-cran-pkgload r-cran-covr r-cran-ragg r-cran-hexbin r-cran-hmisc r-cran-interp r-cran-mapproj r-cran-maps r-cran-maptools r-cran-multcomp r-cran-quantreg r-cran-rpart r-cran-sf r-cran-svglite r-cran-vdiffr r-cran-xml2 r-cran-curl r-cran-sp r-cran-tikzdevice node-highlight.js r-cran-lubridate r-cran-future r-cran-dygraphs r-cran-htmlwidgets r-cran-mockr r-cran-waldo r-cran-dbi lmodern dvisvgm libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils dctrl-tools debhelper debugedit dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax gettext gettext-base gfortran gfortran-11 groff-base hdf5-helpers icu-devtools intltool-debian libaec-dev libaec0 libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libblosc1 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libcmark-gfm-extensions0 libcmark-gfm0 libcurl3-gnutls libcurl4 libcurl4-openssl-dev libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdw1 libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-11-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu67 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 libldap-2.5-0 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libptexenc1 libreadline-dev librtmp1 libsasl2-2 libsasl2-modules-db libscalar-list-utils-perl libsigsegv2 libsm6 libsnappy1v5 libssh-4 libssl-dev libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libsynctex2 libsz2 libtcl8.6 libteckit0 libtexlua53 libtexluajit2 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libuv1 libvariable-magic-perl libwebp6 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxi6 libxml2 libxmu6 libxmuu1 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 littler m4 man-db node-html5shiv node-normalize.css pandoc pandoc-data pkg-config po-debconf r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biocstyle r-bioc-biostrings r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-rhtslib r-bioc-rsamtools r-bioc-s4vectors r-bioc-shortread r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-bookdown r-cran-cli r-cran-colorspace r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-hwriter r-cran-isoband r-cran-jpeg r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-png r-cran-promises r-cran-purrr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-rlang r-cran-rmarkdown r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml sbuild-build-depends-r-bioc-ioniser-dummy t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 334 newly installed, 0 to remove and 0 not upgraded. Need to get 347 MB of archives. After this operation, 1068 MB of additional disk space will be used. Get:1 copy:/<>/resolver-tN26Yn/apt_archive ./ sbuild-build-depends-r-bioc-ioniser-dummy 0.invalid.0 [778 B] Get:2 http://ftpmaster.internal/ubuntu jammy/main amd64 bsdextrautils amd64 2.37.2-4ubuntu1 [71.1 kB] Get:3 http://ftpmaster.internal/ubuntu jammy/main amd64 libuchardet0 amd64 0.0.7-1build1 [76.7 kB] Get:4 http://ftpmaster.internal/ubuntu jammy/main amd64 groff-base amd64 1.22.4-7 [956 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main amd64 libpipeline1 amd64 1.5.4-1 [23.6 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main amd64 man-db amd64 2.9.4-2build1 [1180 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/main amd64 ucf all 3.0043 [56.1 kB] Get:8 http://ftpmaster.internal/ubuntu jammy/universe amd64 tex-common all 6.17 [33.7 kB] Get:9 http://ftpmaster.internal/ubuntu jammy/main amd64 libmd0 amd64 1.0.4-1 [22.9 kB] Get:10 http://ftpmaster.internal/ubuntu jammy/main amd64 libbsd0 amd64 0.11.3-1ubuntu3 [44.7 kB] Get:11 http://ftpmaster.internal/ubuntu jammy/main amd64 libelf1 amd64 0.186-1 [51.4 kB] Get:12 http://ftpmaster.internal/ubuntu jammy/main amd64 libexpat1 amd64 2.4.1-3 [90.1 kB] Get:13 http://ftpmaster.internal/ubuntu jammy/main amd64 libfribidi0 amd64 1.0.8-2ubuntu2 [25.7 kB] Get:14 http://ftpmaster.internal/ubuntu jammy/main amd64 libglib2.0-0 amd64 2.70.1-1 [1436 kB] Get:15 http://ftpmaster.internal/ubuntu jammy/main amd64 libicu67 amd64 67.1-7ubuntu1 [10.1 MB] Get:16 http://ftpmaster.internal/ubuntu jammy/main amd64 libxml2 amd64 2.9.12+dfsg-5 [761 kB] Get:17 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libmagic-mgc amd64 1:5.41-2 [257 kB] Get:18 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libmagic1 amd64 1:5.41-2 [87.3 kB] Get:19 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 file amd64 1:5.41-2 [21.5 kB] Get:20 http://ftpmaster.internal/ubuntu jammy/main amd64 gettext-base amd64 0.21-4ubuntu3 [36.6 kB] Get:21 http://ftpmaster.internal/ubuntu jammy/main amd64 libpsl5 amd64 0.21.0-1.2build1 [57.5 kB] Get:22 http://ftpmaster.internal/ubuntu jammy/main amd64 libuv1 amd64 1.40.0-2ubuntu1 [90.9 kB] Get:23 http://ftpmaster.internal/ubuntu jammy/main amd64 libxau6 amd64 1:1.0.9-1build4 [7654 B] Get:24 http://ftpmaster.internal/ubuntu jammy/main amd64 libxdmcp6 amd64 1:1.1.3-0ubuntu4 [11.0 kB] Get:25 http://ftpmaster.internal/ubuntu jammy/main amd64 libxcb1 amd64 1.14-3ubuntu2 [49.1 kB] Get:26 http://ftpmaster.internal/ubuntu jammy/main amd64 libx11-data all 2:1.7.2-2 [123 kB] Get:27 http://ftpmaster.internal/ubuntu jammy/main amd64 libx11-6 amd64 2:1.7.2-2 [664 kB] Get:28 http://ftpmaster.internal/ubuntu jammy/main amd64 libxext6 amd64 2:1.3.4-1 [31.7 kB] Get:29 http://ftpmaster.internal/ubuntu jammy/main amd64 libxmuu1 amd64 2:1.1.3-0ubuntu2 [10.2 kB] Get:30 http://ftpmaster.internal/ubuntu jammy/main amd64 xauth amd64 1:1.1-1build1 [27.6 kB] Get:31 http://ftpmaster.internal/ubuntu jammy/main amd64 libsigsegv2 amd64 2.13-1ubuntu2 [14.6 kB] Get:32 http://ftpmaster.internal/ubuntu jammy/main amd64 m4 amd64 1.4.18-5ubuntu1 [199 kB] Get:33 http://ftpmaster.internal/ubuntu jammy/main amd64 autoconf all 2.71-2 [338 kB] Get:34 http://ftpmaster.internal/ubuntu jammy/main amd64 autotools-dev all 20180224.1+nmu1 [39.4 kB] Get:35 http://ftpmaster.internal/ubuntu jammy/main amd64 automake all 1:1.16.5-1.1 [558 kB] Get:36 http://ftpmaster.internal/ubuntu jammy/main amd64 autopoint all 0.21-4ubuntu3 [422 kB] Get:37 http://ftpmaster.internal/ubuntu jammy/main amd64 dctrl-tools amd64 2.24-3build1 [67.1 kB] Get:38 http://ftpmaster.internal/ubuntu jammy/main amd64 libdebhelper-perl all 13.5.2ubuntu1 [66.0 kB] Get:39 http://ftpmaster.internal/ubuntu jammy/main amd64 libtool all 2.4.6-15build1 [164 kB] Get:40 http://ftpmaster.internal/ubuntu jammy/main amd64 dh-autoreconf all 20 [16.1 kB] Get:41 http://ftpmaster.internal/ubuntu jammy/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:42 http://ftpmaster.internal/ubuntu jammy/main amd64 libsub-override-perl all 0.09-2 [9532 B] Get:43 http://ftpmaster.internal/ubuntu jammy/main amd64 libfile-stripnondeterminism-perl all 1.12.1-1 [18.1 kB] Get:44 http://ftpmaster.internal/ubuntu jammy/main amd64 dh-strip-nondeterminism all 1.12.1-1 [5200 B] Get:45 http://ftpmaster.internal/ubuntu jammy/main amd64 libdw1 amd64 0.186-1 [251 kB] Get:46 http://ftpmaster.internal/ubuntu jammy/main amd64 debugedit amd64 1:5.0-3 [47.0 kB] Get:47 http://ftpmaster.internal/ubuntu jammy/main amd64 dwz amd64 0.14-1build1 [104 kB] Get:48 http://ftpmaster.internal/ubuntu jammy/main amd64 gettext amd64 0.21-4ubuntu3 [824 kB] Get:49 http://ftpmaster.internal/ubuntu jammy/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:50 http://ftpmaster.internal/ubuntu jammy/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] Get:51 http://ftpmaster.internal/ubuntu jammy/main amd64 debhelper all 13.5.2ubuntu1 [926 kB] Get:52 http://ftpmaster.internal/ubuntu jammy/main amd64 zip amd64 3.0-12build1 [176 kB] Get:53 http://ftpmaster.internal/ubuntu jammy/main amd64 unzip amd64 6.0-26ubuntu2 [174 kB] Get:54 http://ftpmaster.internal/ubuntu jammy/main amd64 libpaper1 amd64 1.1.28build1 [13.8 kB] Get:55 http://ftpmaster.internal/ubuntu jammy/main amd64 libpaper-utils amd64 1.1.28build1 [8668 B] Get:56 http://ftpmaster.internal/ubuntu jammy/main amd64 xdg-utils all 1.1.3-4.1ubuntu1 [62.2 kB] Get:57 http://ftpmaster.internal/ubuntu jammy/main amd64 libblas3 amd64 3.9.0-3ubuntu3 [225 kB] Get:58 http://ftpmaster.internal/ubuntu jammy/main amd64 libbrotli1 amd64 1.0.9-2build4 [315 kB] Get:59 http://ftpmaster.internal/ubuntu jammy/main amd64 libfreetype6 amd64 2.11.0+dfsg-1 [387 kB] Get:60 http://ftpmaster.internal/ubuntu jammy/main amd64 fonts-dejavu-core all 2.37-2build1 [1041 kB] Get:61 http://ftpmaster.internal/ubuntu jammy/main amd64 fontconfig-config all 2.13.1-4.2ubuntu4 [29.1 kB] Get:62 http://ftpmaster.internal/ubuntu jammy/main amd64 libfontconfig1 amd64 2.13.1-4.2ubuntu4 [131 kB] Get:63 http://ftpmaster.internal/ubuntu jammy/main amd64 libpixman-1-0 amd64 0.40.0-1build3 [264 kB] Get:64 http://ftpmaster.internal/ubuntu jammy/main amd64 libxcb-render0 amd64 1.14-3ubuntu2 [16.4 kB] Get:65 http://ftpmaster.internal/ubuntu jammy/main amd64 libxcb-shm0 amd64 1.14-3ubuntu2 [5792 B] Get:66 http://ftpmaster.internal/ubuntu jammy/main amd64 libxrender1 amd64 1:0.9.10-1build3 [19.7 kB] Get:67 http://ftpmaster.internal/ubuntu jammy/main amd64 libcairo2 amd64 1.16.0-5ubuntu2 [628 kB] Get:68 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg2-2build1 [20.6 kB] Get:69 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libsasl2-2 amd64 2.1.27+dfsg2-2build1 [53.9 kB] Get:70 http://ftpmaster.internal/ubuntu jammy/main amd64 libldap-2.5-0 amd64 2.5.6+dfsg-1~exp1ubuntu1 [186 kB] Get:71 http://ftpmaster.internal/ubuntu jammy/main amd64 libnghttp2-14 amd64 1.43.0-1build1 [76.2 kB] Get:72 http://ftpmaster.internal/ubuntu jammy/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2build3 [58.3 kB] Get:73 http://ftpmaster.internal/ubuntu jammy/main amd64 libssh-4 amd64 0.9.6-1 [185 kB] Get:74 http://ftpmaster.internal/ubuntu jammy/main amd64 libcurl4 amd64 7.74.0-1.3ubuntu2 [273 kB] Get:75 http://ftpmaster.internal/ubuntu jammy/main amd64 libjpeg-turbo8 amd64 2.1.1-0ubuntu1 [134 kB] Get:76 http://ftpmaster.internal/ubuntu jammy/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B] Get:77 http://ftpmaster.internal/ubuntu jammy/main amd64 libgfortran5 amd64 11.2.0-12ubuntu1 [794 kB] Get:78 http://ftpmaster.internal/ubuntu jammy/main amd64 liblapack3 amd64 3.9.0-3ubuntu3 [2458 kB] Get:79 http://ftpmaster.internal/ubuntu jammy/main amd64 fontconfig amd64 2.13.1-4.2ubuntu4 [173 kB] Get:80 http://ftpmaster.internal/ubuntu jammy/main amd64 libgraphite2-3 amd64 1.3.14-1build1 [71.2 kB] Get:81 http://ftpmaster.internal/ubuntu jammy/main amd64 libharfbuzz0b amd64 2.7.4-1ubuntu2 [351 kB] Get:82 http://ftpmaster.internal/ubuntu jammy/main amd64 libthai-data all 0.1.28-4.1 [159 kB] Get:83 http://ftpmaster.internal/ubuntu jammy/main amd64 libdatrie1 amd64 0.2.13-1ubuntu3 [19.5 kB] Get:84 http://ftpmaster.internal/ubuntu jammy/main amd64 libthai0 amd64 0.1.28-4.1 [19.2 kB] Get:85 http://ftpmaster.internal/ubuntu jammy/main amd64 libpango-1.0-0 amd64 1.48.10+ds1-1 [195 kB] Get:86 http://ftpmaster.internal/ubuntu jammy/main amd64 libpangoft2-1.0-0 amd64 1.48.10+ds1-1 [51.0 kB] Get:87 http://ftpmaster.internal/ubuntu jammy/main amd64 libpangocairo-1.0-0 amd64 1.48.10+ds1-1 [37.1 kB] Get:88 http://ftpmaster.internal/ubuntu jammy/main amd64 libtcl8.6 amd64 8.6.12+dfsg-1 [989 kB] Get:89 http://ftpmaster.internal/ubuntu jammy/main amd64 libdeflate0 amd64 1.8-1ubuntu1 [56.4 kB] Get:90 http://ftpmaster.internal/ubuntu jammy/main amd64 libjbig0 amd64 2.1-3.1build2 [28.8 kB] Get:91 http://ftpmaster.internal/ubuntu jammy/main amd64 libwebp6 amd64 0.6.1-2.1build1 [198 kB] Get:92 http://ftpmaster.internal/ubuntu jammy/main amd64 libtiff5 amd64 4.3.0-2 [183 kB] Get:93 http://ftpmaster.internal/ubuntu jammy/main amd64 libxft2 amd64 2.3.3-0ubuntu4 [41.5 kB] Get:94 http://ftpmaster.internal/ubuntu jammy/main amd64 x11-common all 1:7.7+23ubuntu1 [23.5 kB] Get:95 http://ftpmaster.internal/ubuntu jammy/main amd64 libxss1 amd64 1:1.2.3-1build1 [8526 B] Get:96 http://ftpmaster.internal/ubuntu jammy/main amd64 libtk8.6 amd64 8.6.12-1 [782 kB] Get:97 http://ftpmaster.internal/ubuntu jammy/main amd64 libice6 amd64 2:1.0.10-1build1 [42.6 kB] Get:98 http://ftpmaster.internal/ubuntu jammy/main amd64 libsm6 amd64 2:1.2.3-1build1 [17.0 kB] Get:99 http://ftpmaster.internal/ubuntu jammy/main amd64 libxt6 amd64 1:1.2.0-1build1 [176 kB] Get:100 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-base-core amd64 4.1.2-1ubuntu1 [26.0 MB] Get:101 http://ftpmaster.internal/ubuntu jammy/main amd64 libgfortran-11-dev amd64 11.2.0-12ubuntu1 [842 kB] Get:102 http://ftpmaster.internal/ubuntu jammy/main amd64 gfortran-11 amd64 11.2.0-12ubuntu1 [11.2 MB] Get:103 http://ftpmaster.internal/ubuntu jammy/main amd64 gfortran amd64 4:11.2.0-1ubuntu1 [1182 B] Get:104 http://ftpmaster.internal/ubuntu jammy/main amd64 libblas-dev amd64 3.9.0-3ubuntu3 [161 kB] Get:105 http://ftpmaster.internal/ubuntu jammy/main amd64 liblapack-dev amd64 3.9.0-3ubuntu3 [4667 kB] Get:106 http://ftpmaster.internal/ubuntu jammy/main amd64 libncurses-dev amd64 6.3-1 [380 kB] Get:107 http://ftpmaster.internal/ubuntu jammy/main amd64 libncurses5-dev amd64 6.3-1 [780 B] Get:108 http://ftpmaster.internal/ubuntu jammy/main amd64 libreadline-dev amd64 8.1-2build1 [166 kB] Get:109 http://ftpmaster.internal/ubuntu jammy/main amd64 libjpeg-turbo8-dev amd64 2.1.1-0ubuntu1 [257 kB] Get:110 http://ftpmaster.internal/ubuntu jammy/main amd64 libjpeg8-dev amd64 8c-2ubuntu8 [1552 B] Get:111 http://ftpmaster.internal/ubuntu jammy/main amd64 libjpeg-dev amd64 8c-2ubuntu8 [1546 B] Get:112 http://ftpmaster.internal/ubuntu jammy/main amd64 libpcre2-16-0 amd64 10.39-3 [202 kB] Get:113 http://ftpmaster.internal/ubuntu jammy/main amd64 libpcre2-32-0 amd64 10.39-3 [193 kB] Get:114 http://ftpmaster.internal/ubuntu jammy/main amd64 libpcre2-posix3 amd64 10.39-3 [6140 B] Get:115 http://ftpmaster.internal/ubuntu jammy/main amd64 libpcre2-dev amd64 10.39-3 [727 kB] Get:116 http://ftpmaster.internal/ubuntu jammy/main amd64 libpcre16-3 amd64 2:8.39-13build4 [164 kB] Get:117 http://ftpmaster.internal/ubuntu jammy/main amd64 libpcre32-3 amd64 2:8.39-13build4 [155 kB] Get:118 http://ftpmaster.internal/ubuntu jammy/main amd64 libpcrecpp0v5 amd64 2:8.39-13build4 [16.5 kB] Get:119 http://ftpmaster.internal/ubuntu jammy/main amd64 libpcre3-dev amd64 2:8.39-13build4 [578 kB] Get:120 http://ftpmaster.internal/ubuntu jammy/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2ubuntu7 [164 kB] Get:121 http://ftpmaster.internal/ubuntu jammy/main amd64 libpng-dev amd64 1.6.37-3build4 [192 kB] Get:122 http://ftpmaster.internal/ubuntu jammy/main amd64 libbz2-dev amd64 1.0.8-4ubuntu4 [32.5 kB] Get:123 http://ftpmaster.internal/ubuntu jammy/main amd64 liblzma-dev amd64 5.2.5-2build1 [159 kB] Get:124 http://ftpmaster.internal/ubuntu jammy/main amd64 icu-devtools amd64 67.1-7ubuntu1 [194 kB] Get:125 http://ftpmaster.internal/ubuntu jammy/main amd64 libicu-dev amd64 67.1-7ubuntu1 [11.1 MB] Get:126 http://ftpmaster.internal/ubuntu jammy/main amd64 pkg-config amd64 0.29.2-1ubuntu2 [48.2 kB] Get:127 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-base-dev all 4.1.2-1ubuntu1 [4306 B] Get:128 http://ftpmaster.internal/ubuntu jammy/main amd64 libfile-which-perl all 1.23-1 [13.8 kB] Get:129 http://ftpmaster.internal/ubuntu jammy/universe amd64 libswitch-perl all 2.17-2.1 [18.3 kB] Get:130 http://ftpmaster.internal/ubuntu jammy/main amd64 libencode-locale-perl all 1.05-1.1 [11.8 kB] Get:131 http://ftpmaster.internal/ubuntu jammy/main amd64 libtimedate-perl all 2.3300-2 [34.0 kB] Get:132 http://ftpmaster.internal/ubuntu jammy/main amd64 libhttp-date-perl all 6.05-1 [9920 B] Get:133 http://ftpmaster.internal/ubuntu jammy/main amd64 libio-html-perl all 1.004-2 [15.4 kB] Get:134 http://ftpmaster.internal/ubuntu jammy/main amd64 liblwp-mediatypes-perl all 6.04-1 [19.5 kB] Get:135 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 liburi-perl all 5.10-1 [78.8 kB] Get:136 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libhttp-message-perl all 6.35-1 [77.0 kB] Get:137 http://ftpmaster.internal/ubuntu jammy/main amd64 libparams-util-perl amd64 1.102-1build2 [22.6 kB] Get:138 http://ftpmaster.internal/ubuntu jammy/main amd64 libsub-install-perl all 0.928-1.1 [9972 B] Get:139 http://ftpmaster.internal/ubuntu jammy/main amd64 libdata-optlist-perl all 0.112-1 [11.0 kB] Get:140 http://ftpmaster.internal/ubuntu jammy/main amd64 libb-hooks-op-check-perl amd64 0.22-1build4 [10.6 kB] Get:141 http://ftpmaster.internal/ubuntu jammy/main amd64 libdynaloader-functions-perl all 0.003-1.1 [12.1 kB] Get:142 http://ftpmaster.internal/ubuntu jammy/main amd64 libdevel-callchecker-perl amd64 0.008-1ubuntu3 [14.8 kB] Get:143 http://ftpmaster.internal/ubuntu jammy/main amd64 libparams-classify-perl amd64 0.015-1build4 [21.9 kB] Get:144 http://ftpmaster.internal/ubuntu jammy/main amd64 libmodule-runtime-perl all 0.016-1 [16.2 kB] Get:145 http://ftpmaster.internal/ubuntu jammy/main amd64 libtry-tiny-perl all 0.30-1 [20.5 kB] Get:146 http://ftpmaster.internal/ubuntu jammy/main amd64 libmodule-implementation-perl all 0.09-1.1 [11.6 kB] Get:147 http://ftpmaster.internal/ubuntu jammy/universe amd64 libscalar-list-utils-perl amd64 1:1.59-1 [56.7 kB] Get:148 http://ftpmaster.internal/ubuntu jammy/main amd64 libpackage-stash-perl all 0.39-1 [19.1 kB] Get:149 http://ftpmaster.internal/ubuntu jammy/universe amd64 libclass-load-perl all 0.25-1 [13.5 kB] Get:150 http://ftpmaster.internal/ubuntu jammy/universe amd64 libclass-load-xs-perl amd64 0.10-1build6 [13.5 kB] Get:151 http://ftpmaster.internal/ubuntu jammy/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [6784 B] Get:152 http://ftpmaster.internal/ubuntu jammy/universe amd64 libdevel-globaldestruction-perl all 0.14-1.1 [6916 B] Get:153 http://ftpmaster.internal/ubuntu jammy/universe amd64 libalgorithm-c3-perl all 0.11-1 [11.0 kB] Get:154 http://ftpmaster.internal/ubuntu jammy/universe amd64 libclass-c3-perl all 0.35-1 [19.0 kB] Get:155 http://ftpmaster.internal/ubuntu jammy/universe amd64 libmro-compat-perl all 0.13-1 [11.2 kB] Get:156 http://ftpmaster.internal/ubuntu jammy/universe amd64 libdevel-overloadinfo-perl all 0.007-1 [7422 B] Get:157 http://ftpmaster.internal/ubuntu jammy/main amd64 libdevel-stacktrace-perl all 2.0400-1 [22.7 kB] Get:158 http://ftpmaster.internal/ubuntu jammy/main amd64 libsub-exporter-perl all 0.988-1 [50.6 kB] Get:159 http://ftpmaster.internal/ubuntu jammy/universe amd64 libeval-closure-perl all 0.14-1 [10.3 kB] Get:160 http://ftpmaster.internal/ubuntu jammy/universe amd64 libdist-checkconflicts-perl all 0.11-1.1 [9632 B] Get:161 http://ftpmaster.internal/ubuntu jammy/universe amd64 libmodule-runtime-conflicts-perl all 0.003-1.1 [6836 B] Get:162 http://ftpmaster.internal/ubuntu jammy/main amd64 libsub-name-perl amd64 0.26-1build2 [11.6 kB] Get:163 http://ftpmaster.internal/ubuntu jammy/universe amd64 libpackage-deprecationmanager-perl all 0.17-1.1 [15.5 kB] Get:164 http://ftpmaster.internal/ubuntu jammy/main amd64 libpackage-stash-xs-perl amd64 0.29-1build4 [19.3 kB] Get:165 http://ftpmaster.internal/ubuntu jammy/universe amd64 libmoose-perl amd64 2.2200-1 [749 kB] Get:166 http://ftpmaster.internal/ubuntu jammy/main amd64 libvariable-magic-perl amd64 0.62-1build4 [35.8 kB] Get:167 http://ftpmaster.internal/ubuntu jammy/main amd64 libb-hooks-endofscope-perl all 0.25-1 [17.8 kB] Get:168 http://ftpmaster.internal/ubuntu jammy/main amd64 libsub-identify-perl amd64 0.14-1build4 [10.6 kB] Get:169 http://ftpmaster.internal/ubuntu jammy/main amd64 libnamespace-clean-perl all 0.27-1 [13.6 kB] Get:170 http://ftpmaster.internal/ubuntu jammy/main amd64 libcurl3-gnutls amd64 7.74.0-1.3ubuntu2 [268 kB] Get:171 http://ftpmaster.internal/ubuntu jammy/universe amd64 libwww-curl-perl amd64 4.17-7build1 [50.9 kB] Get:172 http://ftpmaster.internal/ubuntu jammy/universe amd64 libwww-curl-simple-perl all 0.100191-2 [10.9 kB] Get:173 http://ftpmaster.internal/ubuntu jammy/universe amd64 dh-r all 20210218ubuntu1 [36.4 kB] Get:174 http://ftpmaster.internal/ubuntu jammy/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] Get:175 http://ftpmaster.internal/ubuntu jammy/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-2 [117 kB] Get:176 http://ftpmaster.internal/ubuntu jammy/universe amd64 fonts-lmodern all 2.004.5-6.1 [4532 kB] Get:177 http://ftpmaster.internal/ubuntu jammy/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] Get:178 http://ftpmaster.internal/ubuntu jammy/universe amd64 hdf5-helpers amd64 1.10.7+repack-4ubuntu1 [14.2 kB] Get:179 http://ftpmaster.internal/ubuntu jammy/universe amd64 libaec0 amd64 1.0.6-1 [20.1 kB] Get:180 http://ftpmaster.internal/ubuntu jammy/main amd64 libsnappy1v5 amd64 1.1.8-1build2 [17.4 kB] Get:181 http://ftpmaster.internal/ubuntu jammy/universe amd64 libblosc1 amd64 1.21.1+ds1-1 [34.7 kB] Get:182 http://ftpmaster.internal/ubuntu jammy/main amd64 libboost1.74-dev amd64 1.74.0-13ubuntu1 [9618 kB] Get:183 http://ftpmaster.internal/ubuntu jammy/main amd64 libboost-dev amd64 1.74.0.3ubuntu6 [3452 B] Get:184 http://ftpmaster.internal/ubuntu jammy/universe amd64 libcmark-gfm0 amd64 0.29.0.gfm.0-6 [93.9 kB] Get:185 http://ftpmaster.internal/ubuntu jammy/universe amd64 libcmark-gfm-extensions0 amd64 0.29.0.gfm.0-6 [23.3 kB] Get:186 http://ftpmaster.internal/ubuntu jammy/main amd64 libcurl4-openssl-dev amd64 7.74.0-1.3ubuntu2 [365 kB] Get:187 http://ftpmaster.internal/ubuntu jammy/universe amd64 libsz2 amd64 1.0.6-1 [5354 B] Get:188 http://ftpmaster.internal/ubuntu jammy/universe amd64 libhdf5-103-1 amd64 1.10.7+repack-4ubuntu1 [1295 kB] Get:189 http://ftpmaster.internal/ubuntu jammy/universe amd64 libhdf5-cpp-103-1 amd64 1.10.7+repack-4ubuntu1 [129 kB] Get:190 http://ftpmaster.internal/ubuntu jammy/universe amd64 libhdf5-fortran-102 amd64 1.10.7+repack-4ubuntu1 [90.9 kB] Get:191 http://ftpmaster.internal/ubuntu jammy/universe amd64 libhdf5-hl-100 amd64 1.10.7+repack-4ubuntu1 [58.8 kB] Get:192 http://ftpmaster.internal/ubuntu jammy/universe amd64 libhdf5-hl-fortran-100 amd64 1.10.7+repack-4ubuntu1 [33.8 kB] Get:193 http://ftpmaster.internal/ubuntu jammy/universe amd64 libhdf5-hl-cpp-100 amd64 1.10.7+repack-4ubuntu1 [10.7 kB] Get:194 http://ftpmaster.internal/ubuntu jammy/universe amd64 libaec-dev amd64 1.0.6-1 [17.9 kB] Get:195 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libssl-dev amd64 3.0.0-1ubuntu1 [2365 kB] Get:196 http://ftpmaster.internal/ubuntu jammy/universe amd64 libhdf5-dev amd64 1.10.7+repack-4ubuntu1 [2684 kB] Get:197 http://ftpmaster.internal/ubuntu jammy/universe amd64 libjs-bootstrap all 3.4.1+dfsg-2 [124 kB] Get:198 http://ftpmaster.internal/ubuntu jammy/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] Get:199 http://ftpmaster.internal/ubuntu jammy/universe amd64 libjs-es5-shim all 4.6.2-1 [38.9 kB] Get:200 http://ftpmaster.internal/ubuntu jammy/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-1 [367 kB] Get:201 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-8 [321 kB] Get:202 http://ftpmaster.internal/ubuntu jammy/universe amd64 libjs-jquery-datatables all 1.10.21+dfsg-3 [140 kB] Get:203 http://ftpmaster.internal/ubuntu jammy/universe amd64 libjs-sifter.js all 0.6.0+dfsg-2 [12.8 kB] Get:204 http://ftpmaster.internal/ubuntu jammy/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] Get:205 http://ftpmaster.internal/ubuntu jammy/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] Get:206 http://ftpmaster.internal/ubuntu jammy/universe amd64 libjs-jquery-ui all 1.13.0+dfsg-1 [253 kB] Get:207 http://ftpmaster.internal/ubuntu jammy/universe amd64 libjs-json all 0~20210531+~1.0.5-1 [20.5 kB] Get:208 http://ftpmaster.internal/ubuntu jammy/universe amd64 libjs-lunr all 2.3.8~dfsg-4 [50.0 kB] Get:209 http://ftpmaster.internal/ubuntu jammy/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] Get:210 http://ftpmaster.internal/ubuntu jammy/main amd64 libkpathsea6 amd64 2021.20210626.59705-1 [60.4 kB] Get:211 http://ftpmaster.internal/ubuntu jammy/main amd64 libptexenc1 amd64 2021.20210626.59705-1 [39.1 kB] Get:212 http://ftpmaster.internal/ubuntu jammy/main amd64 libsynctex2 amd64 2021.20210626.59705-1 [55.6 kB] Get:213 http://ftpmaster.internal/ubuntu jammy/universe amd64 libteckit0 amd64 2.5.11+ds1-1 [421 kB] Get:214 http://ftpmaster.internal/ubuntu jammy/main amd64 libtexlua53 amd64 2021.20210626.59705-1 [120 kB] Get:215 http://ftpmaster.internal/ubuntu jammy/main amd64 libtexluajit2 amd64 2021.20210626.59705-1 [267 kB] Get:216 http://ftpmaster.internal/ubuntu jammy/main amd64 libxmu6 amd64 2:1.1.3-0ubuntu2 [49.6 kB] Get:217 http://ftpmaster.internal/ubuntu jammy/main amd64 libxpm4 amd64 1:3.5.12-1build1 [36.5 kB] Get:218 http://ftpmaster.internal/ubuntu jammy/main amd64 libxaw7 amd64 2:1.0.13-1.1build1 [190 kB] Get:219 http://ftpmaster.internal/ubuntu jammy/main amd64 libxi6 amd64 2:1.8-1 [32.5 kB] Get:220 http://ftpmaster.internal/ubuntu jammy/universe amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [27.0 kB] Get:221 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-littler amd64 0.3.14-1 [93.8 kB] Get:222 http://ftpmaster.internal/ubuntu jammy/universe amd64 littler all 0.3.14-1 [2266 B] Get:223 http://ftpmaster.internal/ubuntu jammy/universe amd64 node-html5shiv all 3.7.3+dfsg-3 [12.9 kB] Get:224 http://ftpmaster.internal/ubuntu jammy/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] Get:225 http://ftpmaster.internal/ubuntu jammy/universe amd64 pandoc-data all 2.9.2.1-1ubuntu4 [81.7 kB] Get:226 http://ftpmaster.internal/ubuntu jammy/universe amd64 pandoc amd64 2.9.2.1-1ubuntu4 [20.2 MB] Get:227 http://ftpmaster.internal/ubuntu jammy-proposed/universe amd64 r-bioc-biocgenerics all 0.40.0-1 [583 kB] Get:228 http://ftpmaster.internal/ubuntu jammy-proposed/universe amd64 r-bioc-biobase amd64 2.54.0-1 [2223 kB] Get:229 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-formatr all 1.11-1 [154 kB] Get:230 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] Get:231 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] Get:232 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] Get:233 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-snow all 1:0.4.4-1 [97.6 kB] Get:234 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-bh all 1.74.0-2 [5564 B] Get:235 http://ftpmaster.internal/ubuntu jammy-proposed/universe amd64 r-bioc-biocparallel amd64 1.28.1-1 [1366 kB] Get:236 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-digest amd64 0.6.28-1 [189 kB] Get:237 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] Get:238 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-rlang amd64 0.4.12-2 [1164 kB] Get:239 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-fastmap amd64 1.1.0-1 [64.8 kB] Get:240 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-htmltools amd64 0.5.2-1 [348 kB] Get:241 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-evaluate all 0.14-2build1 [81.4 kB] Get:242 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-xfun amd64 0.28-1 [363 kB] Get:243 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-highr all 0.9+dfsg-1 [38.8 kB] Get:244 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-glue amd64 1.5.0-1 [143 kB] Get:245 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-magrittr amd64 2.0.1-1 [149 kB] Get:246 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-stringi amd64 1.7.5-1 [816 kB] Get:247 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-stringr all 1.4.0-2build1 [192 kB] Get:248 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-yaml amd64 2.2.1-1build1 [101 kB] Get:249 http://ftpmaster.internal/ubuntu jammy/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] Get:250 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-knitr all 1.36+dfsg-1 [857 kB] Get:251 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-jsonlite amd64 1.7.2+dfsg-1 [447 kB] Get:252 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-tinytex all 0.35-1 [127 kB] Get:253 http://ftpmaster.internal/ubuntu jammy/universe amd64 libjs-modernizr all 2.6.2+ds1-4 [47.1 kB] Get:254 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-pkgkitten all 0.2.2-2 [25.3 kB] Get:255 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-rcpp amd64 1.0.7-2 [1953 kB] Get:256 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] Get:257 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-later amd64 1.3.0+dfsg-1 [109 kB] Get:258 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-promises amd64 1.2.0.1+dfsg-1 [273 kB] Get:259 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-httpuv amd64 1.6.3+dfsg-1 [461 kB] Get:260 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] Get:261 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] Get:262 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-sourcetools amd64 0.1.7-3 [45.4 kB] Get:263 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-crayon all 1.4.2-1 [159 kB] Get:264 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-withr all 2.4.2-1 [202 kB] Get:265 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-commonmark amd64 1.7-2 [111 kB] Get:266 http://ftpmaster.internal/ubuntu jammy/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] Get:267 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-shiny all 1.5.0+dfsg-2 [3549 kB] Get:268 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-rmarkdown all 2.6+dfsg-1 [2149 kB] Get:269 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-bookdown all 0.21+dfsg-1 [1064 kB] Get:270 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-biocmanager all 1.30.16+dfsg-3 [115 kB] Get:271 http://ftpmaster.internal/ubuntu jammy/main amd64 t1utils amd64 1.41-4build1 [61.4 kB] Get:272 http://ftpmaster.internal/ubuntu jammy/universe amd64 texlive-binaries amd64 2021.20210626.59705-1 [9847 kB] Get:273 http://ftpmaster.internal/ubuntu jammy-proposed/universe amd64 texlive-base all 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r-cran-rcurl amd64 1.98-1.5-1 [810 kB] Get:283 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-bioc-genomeinfodbdata all 1.2.6-1 [11.0 MB] Get:284 http://ftpmaster.internal/ubuntu jammy-proposed/universe amd64 r-bioc-genomeinfodb all 1.30.0-1 [3951 kB] Get:285 http://ftpmaster.internal/ubuntu jammy-proposed/universe amd64 r-bioc-biostrings amd64 2.62.0-1 [14.1 MB] Get:286 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-lattice amd64 0.20-45-1 [1130 kB] Get:287 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-matrix amd64 1.3-4-2 [3628 kB] Get:288 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-matrixstats amd64 0.61.0-1 [467 kB] Get:289 http://ftpmaster.internal/ubuntu jammy-proposed/universe amd64 r-bioc-matrixgenerics all 1.6.0-1 [302 kB] Get:290 http://ftpmaster.internal/ubuntu jammy-proposed/universe amd64 r-bioc-delayedarray amd64 0.20.0+dfsg-1 [1963 kB] Get:291 http://ftpmaster.internal/ubuntu jammy-proposed/universe amd64 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r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] Get:320 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-tibble amd64 3.1.6+dfsg-1 [452 kB] Get:321 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-dplyr amd64 1.0.7-2 [1155 kB] Get:322 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-farver amd64 2.1.0-1 [1329 kB] Get:323 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-gtable all 0.3.0+dfsg-2build1 [138 kB] Get:324 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-isoband amd64 0.2.5-1 [1685 kB] Get:325 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-mass amd64 7.3-54-2 [1116 kB] Get:326 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-nlme amd64 3.1.153-1 [2257 kB] Get:327 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-mgcv amd64 1.8-38-1 [2982 kB] Get:328 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-labeling all 0.4.2-1 [62.6 kB] Get:329 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-munsell all 0.5.0-2build1 [208 kB] Get:330 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-viridislite all 0.4.0-2 [1087 kB] Get:331 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-scales all 1.1.1-1build1 [486 kB] Get:332 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-ggplot2 all 3.3.5+dfsg-2 [3229 kB] Get:333 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-markdown amd64 1.1+dfsg-1build1 [125 kB] Get:334 http://ftpmaster.internal/ubuntu jammy/universe amd64 r-cran-tidyr amd64 1.1.4-1 [785 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 347 MB in 8s (41.5 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 13434 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.37.2-4ubuntu1_amd64.deb ... Unpacking bsdextrautils (2.37.2-4ubuntu1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../001-libuchardet0_0.0.7-1build1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1build1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-7_amd64.deb ... Unpacking groff-base (1.22.4-7) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../003-libpipeline1_1.5.4-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.4-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.4-2build1_amd64.deb ... Unpacking man-db (2.9.4-2build1) ... Selecting previously unselected package ucf. Preparing to unpack .../005-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... 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Setting up gfortran (4:11.2.0-1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:amd64 (1.16.0-5ubuntu2) ... Setting up dh-autoreconf (20) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libcurl4-openssl-dev:amd64 (7.74.0-1.3ubuntu2) ... Setting up libdist-checkconflicts-perl (0.11-1.1) ... Setting up libxt6:amd64 (1:1.2.0-1build1) ... Setting up libhdf5-103-1:amd64 (1.10.7+repack-4ubuntu1) ... Setting up xauth (1:1.1-1build1) ... Setting up libhdf5-cpp-103-1:amd64 (1.10.7+repack-4ubuntu1) ... Setting up libxss1:amd64 (1:1.2.3-1build1) ... Setting up libpangoft2-1.0-0:amd64 (1.48.10+ds1-1) ... Setting up libpangocairo-1.0-0:amd64 (1.48.10+ds1-1) ... Setting up libhdf5-hl-100:amd64 (1.10.7+repack-4ubuntu1) ... Setting up libxft2:amd64 (2.3.3-0ubuntu4) ... Setting up libxmu6:amd64 (2:1.1.3-0ubuntu2) ... 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Setting up r-cran-formatr (1.11-1) ... Setting up libpackage-deprecationmanager-perl (0.17-1.1) ... Setting up r-cran-viridislite (0.4.0-2) ... Setting up texlive-binaries (2021.20210626.59705-1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up libhdf5-hl-fortran-100:amd64 (1.10.7+repack-4ubuntu1) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-1build6) ... Setting up r-cran-commonmark (1.7-2) ... Setting up r-cran-r6 (2.5.1-1) ... Setting up r-cran-pkgkitten (0.2.2-2) ... Setting up r-cran-jpeg (0.1-9-1) ... Setting up libb-hooks-endofscope-perl (0.25-1) ... Setting up texlive-base (2021.20210921-1) ... /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up r-cran-magrittr (2.0.1-1) ... Setting up r-bioc-genomeinfodbdata (1.2.6-1) ... Setting up r-cran-littler (0.3.14-1) ... Setting up r-cran-rcpp (1.0.7-2) ... Setting up r-bioc-biocgenerics (0.40.0-1) ... Setting up r-cran-rlang (0.4.12-2) ... Setting up r-cran-matrixstats (0.61.0-1) ... Setting up r-base-dev (4.1.2-1ubuntu1) ... Setting up littler (0.3.14-1) ... Setting up r-bioc-matrixgenerics (1.6.0-1) ... Setting up r-cran-xfun (0.28-1) ... Setting up r-cran-withr (2.4.2-1) ... Setting up r-cran-mime (0.12-1) ... Setting up libmoose-perl:amd64 (2.2200-1) ... Setting up r-cran-generics (0.1.1-1) ... Setting up r-cran-base64enc (0.1-3-3) ... Setting up r-cran-digest (0.6.28-1) ... Setting up r-cran-yaml (2.2.1-1build1) ... Setting up r-cran-lambda.r (1.2.4-2build1) ... Setting up r-cran-evaluate (0.14-2build1) ... Setting up r-cran-highr (0.9+dfsg-1) ... Setting up r-cran-fansi (0.5.0-1) ... Setting up r-cran-mass (7.3-54-2) ... Setting up r-cran-snow (1:0.4.4-1) ... Setting up r-cran-glue (1.5.0-1) ... Setting up r-cran-bit (4.0.4+dfsg-1) ... Setting up r-cran-xtable (1:1.8-4-2) ... Setting up r-cran-cli (3.1.0-1) ... Setting up r-cran-lifecycle (1.0.1-1) ... 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Setting up libhdf5-dev (1.10.7+repack-4ubuntu1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libnamespace-clean-perl (0.27-1) ... Setting up r-cran-purrr (0.3.4-1build1) ... Setting up r-cran-later (1.3.0+dfsg-1) ... Setting up r-cran-matrix (1.3-4-2) ... Setting up r-cran-htmltools (0.5.2-1) ... Setting up r-cran-tinytex (0.35-1) ... Setting up r-cran-mgcv (1.8-38-1) ... Setting up r-bioc-iranges (2.28.0-1) ... Setting up r-cran-rcurl (1.98-1.5-1) ... Setting up r-bioc-delayedarray (0.20.0+dfsg-1) ... Setting up r-cran-ellipsis (0.3.2-2) ... Setting up r-cran-stringr (1.4.0-2build1) ... Setting up r-bioc-biocparallel (1.28.1-1) ... Setting up libwww-curl-simple-perl (0.100191-2) ... Setting up r-bioc-rhtslib (1.26.0+dfsg-1) ... Setting up r-cran-munsell (0.5.0-2build1) ... Setting up r-bioc-rhdf5lib (1.16.0+dfsg-1) ... Setting up r-cran-latticeextra (0.6-29-3build1) ... Setting up r-bioc-rhdf5filters (1.6.0+dfsg-1) ... Setting up texlive-bibtex-extra (2021.20210921-1) ... Setting up r-bioc-genomeinfodb (1.30.0-1) ... Setting up r-cran-scales (1.1.1-1build1) ... Setting up r-cran-promises (1.2.0.1+dfsg-1) ... Setting up r-bioc-xvector (0.34.0-1) ... Setting up r-cran-knitr (1.36+dfsg-1) ... Setting up dh-r (20210218ubuntu1) ... Setting up r-cran-vctrs (0.3.8-1ubuntu1) ... Setting up r-cran-pillar (1.6.4+dfsg-1) ... Setting up r-bioc-genomicranges (1.46.1+dfsg-1) ... Setting up r-bioc-rhdf5 (2.38.0+dfsg-1) ... Setting up r-cran-httpuv (1.6.3+dfsg-1) ... Setting up r-bioc-biostrings (2.62.0-1) ... Setting up r-cran-tibble (3.1.6+dfsg-1) ... Setting up r-cran-shiny (1.5.0+dfsg-2) ... Setting up r-cran-tidyselect (1.1.1+dfsg-1) ... Setting up r-cran-rmarkdown (2.6+dfsg-1) ... Setting up r-bioc-rsamtools (2.10.0-1) ... Setting up r-cran-dplyr (1.0.7-2) ... Setting up r-cran-bookdown (0.21+dfsg-1) ... Setting up r-bioc-summarizedexperiment (1.24.0+dfsg-1) ... Setting up r-cran-ggplot2 (3.3.5+dfsg-2) ... Setting up r-cran-tidyr (1.1.4-1) ... Setting up r-bioc-biocstyle (2.22.0+dfsg-1) ... Setting up r-bioc-genomicalignments (1.30.0-1) ... Setting up r-bioc-shortread (1.52.0-1) ... Setting up sbuild-build-depends-r-bioc-ioniser-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.34-0ubuntu3) ... Processing triggers for tex-common (6.17) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-162-generic amd64 (x86_64) Toolchain package versions: binutils_2.37-10ubuntu1 dpkg-dev_1.20.9ubuntu2 g++-11_11.2.0-12ubuntu1 gcc-11_11.2.0-12ubuntu1 libc6-dev_2.34-0ubuntu3 libstdc++-11-dev_11.2.0-12ubuntu1 libstdc++6_11.2.0-12ubuntu1 linux-libc-dev_5.15.0-12.12 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1ubuntu1 apt_2.3.13 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4ubuntu3 autotools-dev_20180224.1+nmu1 base-files_12ubuntu2 base-passwd_3.5.52 bash_5.1-3ubuntu2 binutils_2.37-10ubuntu1 binutils-common_2.37-10ubuntu1 binutils-x86-64-linux-gnu_2.37-10ubuntu1 bsdextrautils_2.37.2-4ubuntu1 bsdutils_1:2.37.2-4ubuntu1 build-essential_12.9ubuntu2 bzip2_1.0.8-4ubuntu4 ca-certificates_20211016 coreutils_8.32-4ubuntu3 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texlive-binaries_2021.20210626.59705-1 texlive-latex-base_2021.20210921-1 tzdata_2021e-1ubuntu1 ubuntu-keyring_2021.03.26 ucf_3.0043 unzip_6.0-26ubuntu2 usrmerge_25ubuntu2 util-linux_2.37.2-4ubuntu1 x11-common_1:7.7+23ubuntu1 xauth_1:1.1-1build1 xdg-utils_1.1.3-4.1ubuntu1 xz-utils_5.2.5-2build1 zip_3.0-12build1 zlib1g_1:1.2.11.dfsg-2ubuntu7 zlib1g-dev_1:1.2.11.dfsg-2ubuntu7 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu Nov 25 21:25:26 2021 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-bioc-ioniser_2.18.0+dfsg-1.dsc dpkg-source: info: extracting r-bioc-ioniser in /<>/r-bioc-ioniser-2.18.0+dfsg dpkg-source: info: unpacking r-bioc-ioniser_2.18.0+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-ioniser_2.18.0+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying IONiseR.Rmd-fix.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-22452397 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-22452397 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-22452397 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package r-bioc-ioniser dpkg-buildpackage: info: source version 2.18.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R debian/rules execute_after_dh_auto_build make[1]: Entering directory '/<>/r-bioc-ioniser-2.18.0+dfsg' cd inst/doc && Rscript -e "require(knitr); require(markdown); knit('IONiseR.Rmd', 'IONiseR.md'); markdownToHTML('IONiseR.md', 'IONiseR.html', options=c('use_xhtml', 'base64_images'));" && rm -f IONiseR.md Loading required package: knitr Loading required package: markdown processing file: IONiseR.Rmd | | | 0% | |.. | 3% inline R code fragments | |.... | 5% label: style (with options) List of 2 $ echo : logi FALSE $ results: chr "asis" | |...... | 8% ordinary text without R code | |........ | 11% label: loadLibs (with options) List of 2 $ message: logi FALSE $ warning: logi FALSE | |......... | 14% ordinary text without R code | |........... | 16% label: readData (with options) List of 1 $ eval: logi FALSE | |............. | 19% ordinary text without R code | |............... | 22% label: loadData | |................. | 24% ordinary text without R code | |................... | 27% label: exampleData | |..................... | 30% ordinary text without R code | |....................... | 32% label: extractData1 (with options) List of 1 $ warning: logi FALSE | |......................... | 35% ordinary text without R code | |.......................... | 38% label: extractData2 (with options) List of 1 $ warning: logi FALSE | |............................ | 41% ordinary text without R code | |.............................. | 43% label: summaryPlots1 (with options) List of 4 $ fig.height: num 5 $ fig.width : num 12.5 $ dev : chr "png" $ warning : logi FALSE | |................................ | 46% ordinary text without R code | |.................................. | 49% label: readCategories (with options) List of 4 $ fig.height: num 5 $ fig.width : num 12.5 $ dev : chr "png" $ warning : logi FALSE | |.................................... | 51% ordinary text without R code | |...................................... | 54% label: summaryPlots2 (with options) List of 4 $ fig.height: num 5 $ fig.width : num 12.5 $ dev : chr "png" $ warning : logi FALSE | |........................................ | 57% ordinary text without R code | |.......................................... | 59% label: numReads (with options) List of 4 $ fig.height: num 4.8 $ fig.width : num 14.5 $ dev : chr "png" $ warning : logi FALSE | |............................................ | 62% ordinary text without R code | |............................................. | 65% label: heatmapExample (with options) List of 5 $ fig.height: num 4.8 $ fig.width : num 14.5 $ dev : chr "png" $ message : logi FALSE $ warning : logi FALSE Attaching package: 'dplyr' The following objects are masked from 'package:stats': filter, lag The following objects are masked from 'package:base': intersect, setdiff, setequal, union | |............................................... | 68% ordinary text without R code | |................................................. | 70% label: channelActivity (with options) List of 5 $ fig.height: num 4.8 $ fig.width : num 10 $ dev : chr "png" $ message : logi FALSE $ warning : logi FALSE | |................................................... | 73% ordinary text without R code | |..................................................... | 76% label: pentamerCorrelation (with options) List of 5 $ fig.height: num 5 $ fig.width : num 6.5 $ dev : chr "png" $ message : logi FALSE $ warning : logi FALSE | |....................................................... | 78% ordinary text without R code | |......................................................... | 81% label: combinedplots (with options) List of 1 $ eval: logi FALSE | |........................................................... | 84% ordinary text without R code | |............................................................. | 86% label: writefastq (with options) List of 1 $ message: logi FALSE Loading required package: BiocGenerics Attaching package: 'BiocGenerics' The following objects are masked from 'package:dplyr': combine, intersect, setdiff, union The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': anyDuplicated, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which.max, which.min Loading required package: BiocParallel Loading required package: Biostrings Loading required package: S4Vectors Loading required package: stats4 Attaching package: 'S4Vectors' The following objects are masked from 'package:dplyr': first, rename The following objects are masked from 'package:base': expand.grid, I, unname Loading required package: IRanges Attaching package: 'IRanges' The following objects are masked from 'package:dplyr': collapse, desc, slice Loading required package: XVector Loading required package: GenomeInfoDb Attaching package: 'Biostrings' The following object is masked from 'package:base': strsplit Loading required package: Rsamtools Loading required package: GenomicRanges Loading required package: GenomicAlignments Loading required package: SummarizedExperiment Loading required package: MatrixGenerics Loading required package: matrixStats Attaching package: 'matrixStats' The following object is masked from 'package:dplyr': count Attaching package: 'MatrixGenerics' The following objects are masked from 'package:matrixStats': colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, colCounts, colCummaxs, colCummins, colCumprods, colCumsums, colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, colWeightedMeans, colWeightedMedians, colWeightedSds, colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, rowWeightedMads, rowWeightedMeans, rowWeightedMedians, rowWeightedSds, rowWeightedVars Loading required package: Biobase Welcome to Bioconductor Vignettes contain introductory material; view with 'browseVignettes()'. To cite Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'. Attaching package: 'Biobase' The following object is masked from 'package:MatrixGenerics': rowMedians The following objects are masked from 'package:matrixStats': anyMissing, rowMedians Attaching package: 'GenomicAlignments' The following object is masked from 'package:dplyr': last Attaching package: 'ShortRead' The following object is masked from 'package:dplyr': id | |.............................................................. | 89% ordinary text without R code | |................................................................ | 92% label: writefastq2 | |.................................................................. | 95% ordinary text without R code | |.................................................................... | 97% label: fast5toFastq | |......................................................................| 100% ordinary text without R code output file: IONiseR.md [1] "IONiseR.md" make[1]: Leaving directory '/<>/r-bioc-ioniser-2.18.0+dfsg' dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-ioniser/ -O--buildsystem=R I: R packages needed for DEP8: testthat I: R Package: IONiseR Version: 2.18.0 I: Building using R version 4.1.2-1ubuntu1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Thu, 25 Nov 2021 22:16:06 +0100 mkdir -p /<>/r-bioc-ioniser-2.18.0\+dfsg/debian/r-bioc-ioniser/usr/lib/R/site-library R CMD INSTALL -l /<>/r-bioc-ioniser-2.18.0\+dfsg/debian/r-bioc-ioniser/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 25 Nov 2021 22:16:06 +0100'" * installing *source* package ‘IONiseR’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IONiseR) rm -f /<>/r-bioc-ioniser-2.18.0\+dfsg/debian/r-bioc-ioniser/usr/lib/R/site-library/IONiseR/LICENSE W: Ignoring specified R dependency: R (>= 3.4) I: Using r-cran-testthat for Recommends:testthat I: Using r-bioc-biocstyle for Suggests:BiocStyle I: Using r-cran-knitr for Suggests:knitr I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-cran-gridextra for Suggests:gridExtra W: Cannot find a debian package for Suggests:minionSummaryData I: Using r-bioc-rhdf5 for Imports:rhdf5 I: Using r-cran-dplyr for Imports:dplyr I: Using r-cran-magrittr for Imports:magrittr I: Using r-cran-tidyr for Imports:tidyr I: Using r-bioc-shortread for Imports:ShortRead I: Using r-bioc-biostrings for Imports:Biostrings I: Using r-cran-ggplot2 for Imports:ggplot2 I: Using r-bioc-biocgenerics for Imports:BiocGenerics I: Using r-bioc-xvector for Imports:XVector I: Using r-cran-tibble for Imports:tibble I: Using r-bioc-biocparallel for Imports:BiocParallel I: Using r-cran-bit64 for Imports:bit64 I: Using r-cran-stringr for Imports:stringr I: BioConductor API version: r-api-bioc-3.14 I: Use r-bioc-ioniser as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R debian/rules override_dh_fixperms make[1]: Entering directory '/<>/r-bioc-ioniser-2.18.0+dfsg' dh_fixperms find debian -name '*.fast5' | xargs chmod -x make[1]: Leaving directory '/<>/r-bioc-ioniser-2.18.0+dfsg' dh_missing -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R INFO: pkgstriptranslations version 149 pkgstriptranslations: processing r-bioc-ioniser (in debian/r-bioc-ioniser); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-bioc-ioniser/DEBIAN/control, package r-bioc-ioniser, directory debian/r-bioc-ioniser pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-bioc-ioniser ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-bioc-ioniser' in '../r-bioc-ioniser_2.18.0+dfsg-1_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../r-bioc-ioniser_2.18.0+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-11-26T08:49:29Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-bioc-ioniser_2.18.0+dfsg-1_amd64.changes: ------------------------------------------- Format: 1.8 Date: Thu, 25 Nov 2021 22:16:06 +0100 Source: r-bioc-ioniser Binary: r-bioc-ioniser Built-For-Profiles: noudeb Architecture: all Version: 2.18.0+dfsg-1 Distribution: jammy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: r-bioc-ioniser - Quality Assessment Tools for Oxford Nanopore MinION data Changes: r-bioc-ioniser (2.18.0+dfsg-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) * Add marker to not delete the needed Build-Depends Checksums-Sha1: 735222b8df45b3cf86708efa88448243509f9cea 1147546 r-bioc-ioniser_2.18.0+dfsg-1_all.deb 0f21fe85ce4aa9b67e5777be907a4bbc00977818 16104 r-bioc-ioniser_2.18.0+dfsg-1_amd64.buildinfo Checksums-Sha256: 8089c7be6ca9b1aeeb3974855727e12b98c2f5015fa692253317a52444ebeda5 1147546 r-bioc-ioniser_2.18.0+dfsg-1_all.deb 7bd8fdec9ac6ca9ac78e609554f211dab989be77e7015d2202a23159b63c37d8 16104 r-bioc-ioniser_2.18.0+dfsg-1_amd64.buildinfo Files: 91999577aea4ca5adaa3622e7a71475b 1147546 gnu-r optional r-bioc-ioniser_2.18.0+dfsg-1_all.deb af63a22cb5dc983f8fc338bb72ecf316 16104 gnu-r optional r-bioc-ioniser_2.18.0+dfsg-1_amd64.buildinfo +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: r-bioc-ioniser Binary: r-bioc-ioniser Architecture: all Version: 2.18.0+dfsg-1 Checksums-Md5: 91999577aea4ca5adaa3622e7a71475b 1147546 r-bioc-ioniser_2.18.0+dfsg-1_all.deb Checksums-Sha1: 735222b8df45b3cf86708efa88448243509f9cea 1147546 r-bioc-ioniser_2.18.0+dfsg-1_all.deb Checksums-Sha256: 8089c7be6ca9b1aeeb3974855727e12b98c2f5015fa692253317a52444ebeda5 1147546 r-bioc-ioniser_2.18.0+dfsg-1_all.deb Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Fri, 26 Nov 2021 08:49:28 +0000 Build-Path: /<>/r-bioc-ioniser-2.18.0+dfsg Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.1), autopoint (= 0.21-4ubuntu3), autotools-dev (= 20180224.1+nmu1), base-files (= 12ubuntu2), base-passwd (= 3.5.52), bash (= 5.1-3ubuntu2), binutils (= 2.37-10ubuntu1), binutils-common (= 2.37-10ubuntu1), binutils-x86-64-linux-gnu (= 2.37-10ubuntu1), bsdextrautils (= 2.37.2-4ubuntu1), bsdutils (= 1:2.37.2-4ubuntu1), build-essential (= 12.9ubuntu2), bzip2 (= 1.0.8-4ubuntu4), ca-certificates (= 20211016), coreutils (= 8.32-4ubuntu3), cpp (= 4:11.2.0-1ubuntu1), cpp-11 (= 11.2.0-12ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-3), dctrl-tools (= 2.24-3build1), debconf (= 1.5.79), debhelper (= 13.5.2ubuntu1), debianutils (= 5.5-1), debugedit (= 1:5.0-3), dh-autoreconf (= 20), dh-r (= 20210218ubuntu1), dh-strip-nondeterminism (= 1.12.1-1), diffutils (= 1:3.8-0ubuntu1), dpkg (= 1.20.9ubuntu2), dpkg-dev (= 1.20.9ubuntu2), dwz (= 0.14-1build1), file (= 1:5.41-2), findutils (= 4.8.0-1ubuntu2), fontconfig (= 2.13.1-4.2ubuntu4), fontconfig-config (= 2.13.1-4.2ubuntu4), fonts-dejavu-core (= 2.37-2build1), fonts-font-awesome (= 5.0.10+really4.7.0~dfsg-4.1), fonts-glyphicons-halflings (= 1.009~3.4.1+dfsg-2), fonts-lmodern (= 2.004.5-6.1), fonts-mathjax (= 2.7.9+dfsg-1), g++ (= 4:11.2.0-1ubuntu1), g++-11 (= 11.2.0-12ubuntu1), gcc (= 4:11.2.0-1ubuntu1), gcc-11 (= 11.2.0-12ubuntu1), gcc-11-base (= 11.2.0-12ubuntu1), gettext (= 0.21-4ubuntu3), gettext-base (= 0.21-4ubuntu3), gfortran (= 4:11.2.0-1ubuntu1), gfortran-11 (= 11.2.0-12ubuntu1), grep (= 3.7-1), groff-base (= 1.22.4-7), gzip (= 1.10-4ubuntu2), hdf5-helpers (= 1.10.7+repack-4ubuntu1), hostname (= 3.23ubuntu1), icu-devtools (= 67.1-7ubuntu1), init-system-helpers (= 1.60build1), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-10ubuntu2), libaec-dev (= 1.0.6-1), libaec0 (= 1.0.6-1), libalgorithm-c3-perl (= 0.11-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.2.0-12ubuntu1), libatomic1 (= 11.2.0-12ubuntu1), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0-2ubuntu3), libaudit1 (= 1:3.0-2ubuntu3), libb-hooks-endofscope-perl (= 0.25-1), libb-hooks-op-check-perl (= 0.22-1build4), libbinutils (= 2.37-10ubuntu1), libblas-dev (= 3.9.0-3ubuntu3), libblas3 (= 3.9.0-3ubuntu3), libblkid1 (= 2.37.2-4ubuntu1), libblosc1 (= 1.21.1+ds1-1), libboost-dev (= 1.74.0.3ubuntu6), libboost1.74-dev (= 1.74.0-13ubuntu1), libbrotli1 (= 1.0.9-2build4), libbsd0 (= 0.11.3-1ubuntu3), libbz2-1.0 (= 1.0.8-4ubuntu4), libbz2-dev (= 1.0.8-4ubuntu4), libc-bin (= 2.34-0ubuntu3), libc-dev-bin (= 2.34-0ubuntu3), libc6 (= 2.34-0ubuntu3), libc6-dev (= 2.34-0ubuntu3), libcairo2 (= 1.16.0-5ubuntu2), libcap-ng0 (= 0.7.9-2.2build2), libcap2 (= 1:2.44-1build2), libcc1-0 (= 11.2.0-12ubuntu1), libclass-c3-perl (= 0.35-1), libclass-load-perl (= 0.25-1), libclass-load-xs-perl (= 0.10-1build6), libcmark-gfm-extensions0 (= 0.29.0.gfm.0-6), libcmark-gfm0 (= 0.29.0.gfm.0-6), libcom-err2 (= 1.46.4-1ubuntu1), libcrypt-dev (= 1:4.4.26-1), libcrypt1 (= 1:4.4.26-1), libctf-nobfd0 (= 2.37-10ubuntu1), libctf0 (= 2.37-10ubuntu1), libcurl3-gnutls (= 7.74.0-1.3ubuntu2), libcurl4 (= 7.74.0-1.3ubuntu2), libcurl4-openssl-dev (= 7.74.0-1.3ubuntu2), libdata-optlist-perl (= 0.112-1), libdatrie1 (= 0.2.13-1ubuntu3), libdb5.3 (= 5.3.28+dfsg1-0.8ubuntu2), libdebconfclient0 (= 0.256ubuntu4), libdebhelper-perl (= 13.5.2ubuntu1), libdeflate0 (= 1.8-1ubuntu1), libdevel-callchecker-perl (= 0.008-1ubuntu3), libdevel-globaldestruction-perl (= 0.14-1.1), libdevel-overloadinfo-perl (= 0.007-1), libdevel-stacktrace-perl (= 2.0400-1), libdist-checkconflicts-perl (= 0.11-1.1), libdpkg-perl (= 1.20.9ubuntu2), libdw1 (= 0.186-1), libdynaloader-functions-perl (= 0.003-1.1), libelf1 (= 0.186-1), libencode-locale-perl (= 1.05-1.1), libeval-closure-perl (= 0.14-1), libexpat1 (= 2.4.1-3), libffi8 (= 3.4.2-1ubuntu5), libfile-stripnondeterminism-perl (= 1.12.1-1), libfile-which-perl (= 1.23-1), libfontconfig1 (= 2.13.1-4.2ubuntu4), libfreetype6 (= 2.11.0+dfsg-1), libfribidi0 (= 1.0.8-2ubuntu2), libgcc-11-dev (= 11.2.0-12ubuntu1), libgcc-s1 (= 11.2.0-12ubuntu1), libgcrypt20 (= 1.9.4-3ubuntu2), libgdbm-compat4 (= 1.22-1), libgdbm6 (= 1.22-1), libgfortran-11-dev (= 11.2.0-12ubuntu1), libgfortran5 (= 11.2.0-12ubuntu1), libglib2.0-0 (= 2.70.1-1), libgmp10 (= 2:6.2.1+dfsg-1ubuntu3), libgnutls30 (= 3.7.2-2ubuntu1), libgomp1 (= 11.2.0-12ubuntu1), libgpg-error0 (= 1.42-3), libgraphite2-3 (= 1.3.14-1build1), libgssapi-krb5-2 (= 1.18.3-7), libharfbuzz0b (= 2.7.4-1ubuntu2), libhdf5-103-1 (= 1.10.7+repack-4ubuntu1), libhdf5-cpp-103-1 (= 1.10.7+repack-4ubuntu1), libhdf5-dev (= 1.10.7+repack-4ubuntu1), libhdf5-fortran-102 (= 1.10.7+repack-4ubuntu1), libhdf5-hl-100 (= 1.10.7+repack-4ubuntu1), libhdf5-hl-cpp-100 (= 1.10.7+repack-4ubuntu1), libhdf5-hl-fortran-100 (= 1.10.7+repack-4ubuntu1), libhogweed6 (= 3.7.3-1build1), libhttp-date-perl (= 6.05-1), libhttp-message-perl (= 6.35-1), libice6 (= 2:1.0.10-1build1), libicu-dev (= 67.1-7ubuntu1), libicu67 (= 67.1-7ubuntu1), libidn2-0 (= 2.3.2-2), libio-html-perl (= 1.004-2), libisl23 (= 0.24-2), libitm1 (= 11.2.0-12ubuntu1), libjbig0 (= 2.1-3.1build2), libjpeg-dev (= 8c-2ubuntu8), libjpeg-turbo8 (= 2.1.1-0ubuntu1), libjpeg-turbo8-dev (= 2.1.1-0ubuntu1), libjpeg8 (= 8c-2ubuntu8), libjpeg8-dev (= 8c-2ubuntu8), libjs-bootstrap (= 3.4.1+dfsg-2), libjs-d3 (= 3.5.17-4), libjs-es5-shim (= 4.6.2-1), libjs-highlight.js (= 9.18.5+dfsg1-1), libjs-jquery (= 3.5.1+dfsg+~3.5.5-8), libjs-jquery-datatables (= 1.10.21+dfsg-3), libjs-jquery-selectize.js (= 0.12.6+dfsg-1.1), libjs-jquery-ui (= 1.13.0+dfsg-1), libjs-json (= 0~20210531+~1.0.5-1), libjs-lunr (= 2.3.8~dfsg-4), libjs-mathjax (= 2.7.9+dfsg-1), libjs-microplugin.js (= 0.0.3+dfsg-1.1), libjs-modernizr (= 2.6.2+ds1-4), libjs-prettify (= 2015.12.04+dfsg-1.1), libjs-sifter.js (= 0.6.0+dfsg-2), libjs-twitter-bootstrap-datepicker (= 1.3.1+dfsg1-4.1), libk5crypto3 (= 1.18.3-7), libkeyutils1 (= 1.6.1-2ubuntu2), libkpathsea6 (= 2021.20210626.59705-1), libkrb5-3 (= 1.18.3-7), libkrb5support0 (= 1.18.3-7), liblapack-dev (= 3.9.0-3ubuntu3), liblapack3 (= 3.9.0-3ubuntu3), libldap-2.5-0 (= 2.5.6+dfsg-1~exp1ubuntu1), liblsan0 (= 11.2.0-12ubuntu1), liblwp-mediatypes-perl (= 6.04-1), liblz4-1 (= 1.9.3-2build1), liblzma-dev (= 5.2.5-2build1), liblzma5 (= 5.2.5-2build1), libmagic-mgc (= 1:5.41-2), libmagic1 (= 1:5.41-2), libmd0 (= 1.0.4-1), libmodule-implementation-perl (= 0.09-1.1), libmodule-runtime-conflicts-perl (= 0.003-1.1), libmodule-runtime-perl (= 0.016-1), libmoose-perl (= 2.2200-1), libmount1 (= 2.37.2-4ubuntu1), libmpc3 (= 1.2.1-1), libmpfr6 (= 4.1.0-3build2), libmro-compat-perl (= 0.13-1), libnamespace-clean-perl (= 0.27-1), libncurses-dev (= 6.3-1), libncurses5-dev (= 6.3-1), libncurses6 (= 6.3-1), libncursesw6 (= 6.3-1), libnettle8 (= 3.7.3-1build1), libnghttp2-14 (= 1.43.0-1build1), libnsl-dev (= 1.3.0-2build1), libnsl2 (= 1.3.0-2build1), libp11-kit0 (= 0.24.0-5), libpackage-deprecationmanager-perl (= 0.17-1.1), libpackage-stash-perl (= 0.39-1), libpackage-stash-xs-perl (= 0.29-1build4), libpam-modules (= 1.4.0-10ubuntu1), libpam-modules-bin (= 1.4.0-10ubuntu1), libpam-runtime (= 1.4.0-10ubuntu1), libpam0g (= 1.4.0-10ubuntu1), libpango-1.0-0 (= 1.48.10+ds1-1), libpangocairo-1.0-0 (= 1.48.10+ds1-1), libpangoft2-1.0-0 (= 1.48.10+ds1-1), libpaper-utils (= 1.1.28build1), libpaper1 (= 1.1.28build1), libparams-classify-perl (= 0.015-1build4), libparams-util-perl (= 1.102-1build2), libpcre16-3 (= 2:8.39-13build4), libpcre2-16-0 (= 10.39-3), libpcre2-32-0 (= 10.39-3), libpcre2-8-0 (= 10.39-3), libpcre2-dev (= 10.39-3), libpcre2-posix3 (= 10.39-3), libpcre3 (= 2:8.39-13build4), libpcre3-dev (= 2:8.39-13build4), libpcre32-3 (= 2:8.39-13build4), libpcrecpp0v5 (= 2:8.39-13build4), libperl5.32 (= 5.32.1-3ubuntu3), libpipeline1 (= 1.5.4-1), libpixman-1-0 (= 0.40.0-1build3), libpng-dev (= 1.6.37-3build4), libpng16-16 (= 1.6.37-3build4), libpsl5 (= 0.21.0-1.2build1), libptexenc1 (= 2021.20210626.59705-1), libquadmath0 (= 11.2.0-12ubuntu1), libreadline-dev (= 8.1-2build1), libreadline8 (= 8.1-2build1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build3), libsasl2-2 (= 2.1.27+dfsg2-2build1), libsasl2-modules-db (= 2.1.27+dfsg2-2build1), libscalar-list-utils-perl (= 1:1.59-1), libseccomp2 (= 2.5.2-2ubuntu2), libselinux1 (= 3.3-1), libsigsegv2 (= 2.13-1ubuntu2), libsm6 (= 2:1.2.3-1build1), libsmartcols1 (= 2.37.2-4ubuntu1), libsnappy1v5 (= 1.1.8-1build2), libssh-4 (= 0.9.6-1), libssl-dev (= 3.0.0-1ubuntu1), libssl1.1 (= 1.1.1l-1ubuntu1), libssl3 (= 3.0.0-1ubuntu1), libstdc++-11-dev (= 11.2.0-12ubuntu1), libstdc++6 (= 11.2.0-12ubuntu1), libsub-exporter-perl (= 0.988-1), libsub-exporter-progressive-perl (= 0.001013-1), libsub-identify-perl (= 0.14-1build4), libsub-install-perl (= 0.928-1.1), libsub-name-perl (= 0.26-1build2), libsub-override-perl (= 0.09-2), libswitch-perl (= 2.17-2.1), libsynctex2 (= 2021.20210626.59705-1), libsystemd0 (= 248.3-1ubuntu8), libsz2 (= 1.0.6-1), libtasn1-6 (= 4.18.0-4), libtcl8.6 (= 8.6.12+dfsg-1), libteckit0 (= 2.5.11+ds1-1), libtexlua53 (= 2021.20210626.59705-1), libtexluajit2 (= 2021.20210626.59705-1), libthai-data (= 0.1.28-4.1), libthai0 (= 0.1.28-4.1), libtiff5 (= 4.3.0-2), libtimedate-perl (= 2.3300-2), libtinfo6 (= 6.3-1), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtk8.6 (= 8.6.12-1), libtool (= 2.4.6-15build1), libtry-tiny-perl (= 0.30-1), libtsan0 (= 11.2.0-12ubuntu1), libubsan1 (= 11.2.0-12ubuntu1), libuchardet0 (= 0.0.7-1build1), libudev1 (= 248.3-1ubuntu8), libunistring2 (= 0.9.10-6), liburi-perl (= 5.10-1), libuuid1 (= 2.37.2-4ubuntu1), libuv1 (= 1.40.0-2ubuntu1), libvariable-magic-perl (= 0.62-1build4), libwebp6 (= 0.6.1-2.1build1), libwww-curl-perl (= 4.17-7build1), libwww-curl-simple-perl (= 0.100191-2), libx11-6 (= 2:1.7.2-2), libx11-data (= 2:1.7.2-2), libxau6 (= 1:1.0.9-1build4), libxaw7 (= 2:1.0.13-1.1build1), libxcb-render0 (= 1.14-3ubuntu2), libxcb-shm0 (= 1.14-3ubuntu2), libxcb1 (= 1.14-3ubuntu2), libxdmcp6 (= 1:1.1.3-0ubuntu4), libxext6 (= 2:1.3.4-1), libxft2 (= 2.3.3-0ubuntu4), libxi6 (= 2:1.8-1), libxml2 (= 2.9.12+dfsg-5), libxmu6 (= 2:1.1.3-0ubuntu2), libxmuu1 (= 2:1.1.3-0ubuntu2), libxpm4 (= 1:3.5.12-1build1), libxrender1 (= 1:0.9.10-1build3), libxss1 (= 1:1.2.3-1build1), libxt6 (= 1:1.2.0-1build1), libzstd1 (= 1.4.8+dfsg-3), libzzip-0-13 (= 0.13.72+dfsg.1-1.1), linux-libc-dev (= 5.15.0-12.12), littler (= 0.3.14-1), login (= 1:4.8.1-1ubuntu10), lsb-base (= 11.1.0ubuntu3), lto-disabled-list (= 16), m4 (= 1.4.18-5ubuntu1), make (= 4.3-4ubuntu2), man-db (= 2.9.4-2build1), mawk (= 1.3.4.20200120-2build1), ncurses-base (= 6.3-1), ncurses-bin (= 6.3-1), node-html5shiv (= 3.7.3+dfsg-3), node-normalize.css (= 8.0.1-5), openssl (= 3.0.0-1ubuntu1), pandoc (= 2.9.2.1-1ubuntu4), pandoc-data (= 2.9.2.1-1ubuntu4), patch (= 2.7.6-7build1), perl (= 5.32.1-3ubuntu3), perl-base (= 5.32.1-3ubuntu3), perl-modules-5.32 (= 5.32.1-3ubuntu3), pkg-config (= 0.29.2-1ubuntu2), po-debconf (= 1.0.21+nmu1), r-base-core (= 4.1.2-1ubuntu1), r-base-dev (= 4.1.2-1ubuntu1), r-bioc-biobase (= 2.54.0-1), r-bioc-biocgenerics (= 0.40.0-1), r-bioc-biocparallel (= 1.28.1-1), r-bioc-biocstyle (= 2.22.0+dfsg-1), r-bioc-biostrings (= 2.62.0-1), r-bioc-delayedarray (= 0.20.0+dfsg-1), r-bioc-genomeinfodb (= 1.30.0-1), r-bioc-genomeinfodbdata (= 1.2.6-1), r-bioc-genomicalignments (= 1.30.0-1), r-bioc-genomicranges (= 1.46.1+dfsg-1), r-bioc-iranges (= 2.28.0-1), r-bioc-matrixgenerics (= 1.6.0-1), r-bioc-rhdf5 (= 2.38.0+dfsg-1), r-bioc-rhdf5filters (= 1.6.0+dfsg-1), r-bioc-rhdf5lib (= 1.16.0+dfsg-1), r-bioc-rhtslib (= 1.26.0+dfsg-1), r-bioc-rsamtools (= 2.10.0-1), r-bioc-s4vectors (= 0.32.3-1), r-bioc-shortread (= 1.52.0-1), r-bioc-summarizedexperiment (= 1.24.0+dfsg-1), r-bioc-xvector (= 0.34.0-1), r-bioc-zlibbioc (= 1.40.0+dfsg-1), r-cran-base64enc (= 0.1-3-3), r-cran-bh (= 1.74.0-2), r-cran-biocmanager (= 1.30.16+dfsg-3), r-cran-bit (= 4.0.4+dfsg-1), r-cran-bit64 (= 4.0.5-1), r-cran-bitops (= 1.0-7-1), r-cran-bookdown (= 0.21+dfsg-1), r-cran-cli (= 3.1.0-1), r-cran-colorspace (= 2.0-2+dfsg-1), r-cran-commonmark (= 1.7-2), r-cran-cpp11 (= 0.4.1-1), r-cran-crayon (= 1.4.2-1), r-cran-digest (= 0.6.28-1), r-cran-dplyr (= 1.0.7-2), r-cran-ellipsis (= 0.3.2-2), r-cran-evaluate (= 0.14-2build1), r-cran-fansi (= 0.5.0-1), r-cran-farver (= 2.1.0-1), r-cran-fastmap (= 1.1.0-1), r-cran-formatr (= 1.11-1), r-cran-futile.logger (= 1.4.3-4build1), r-cran-futile.options (= 1.0.1-3build1), r-cran-generics (= 0.1.1-1), r-cran-ggplot2 (= 3.3.5+dfsg-2), r-cran-glue (= 1.5.0-1), r-cran-gtable (= 0.3.0+dfsg-2build1), r-cran-highr (= 0.9+dfsg-1), r-cran-htmltools (= 0.5.2-1), r-cran-httpuv (= 1.6.3+dfsg-1), r-cran-hwriter (= 1.3.2-4build1), r-cran-isoband (= 0.2.5-1), r-cran-jpeg (= 0.1-9-1), r-cran-jsonlite (= 1.7.2+dfsg-1), r-cran-knitr (= 1.36+dfsg-1), r-cran-labeling (= 0.4.2-1), r-cran-lambda.r (= 1.2.4-2build1), r-cran-later (= 1.3.0+dfsg-1), r-cran-lattice (= 0.20-45-1), r-cran-latticeextra (= 0.6-29-3build1), r-cran-lifecycle (= 1.0.1-1), r-cran-littler (= 0.3.14-1), r-cran-magrittr (= 2.0.1-1), r-cran-markdown (= 1.1+dfsg-1build1), r-cran-mass (= 7.3-54-2), r-cran-matrix (= 1.3-4-2), r-cran-matrixstats (= 0.61.0-1), r-cran-mgcv (= 1.8-38-1), r-cran-mime (= 0.12-1), r-cran-munsell (= 0.5.0-2build1), r-cran-nlme (= 3.1.153-1), r-cran-pillar (= 1.6.4+dfsg-1), r-cran-pkgconfig (= 2.0.3-2build1), r-cran-pkgkitten (= 0.2.2-2), r-cran-png (= 0.1-7-4), r-cran-promises (= 1.2.0.1+dfsg-1), r-cran-purrr (= 0.3.4-1build1), r-cran-r6 (= 2.5.1-1), r-cran-rcolorbrewer (= 1.1-2-3), r-cran-rcpp (= 1.0.7-2), r-cran-rcurl (= 1.98-1.5-1), r-cran-rlang (= 0.4.12-2), r-cran-rmarkdown (= 2.6+dfsg-1), r-cran-scales (= 1.1.1-1build1), r-cran-shiny (= 1.5.0+dfsg-2), r-cran-snow (= 1:0.4.4-1), r-cran-sourcetools (= 0.1.7-3), r-cran-stringi (= 1.7.5-1), r-cran-stringr (= 1.4.0-2build1), r-cran-tibble (= 3.1.6+dfsg-1), r-cran-tidyr (= 1.1.4-1), r-cran-tidyselect (= 1.1.1+dfsg-1), r-cran-tinytex (= 0.35-1), r-cran-utf8 (= 1.2.2-1), r-cran-vctrs (= 0.3.8-1ubuntu1), r-cran-viridislite (= 0.4.0-2), r-cran-withr (= 2.4.2-1), r-cran-xfun (= 0.28-1), r-cran-xtable (= 1:1.8-4-2), r-cran-yaml (= 2.2.1-1build1), readline-common (= 8.1-2build1), rpcsvc-proto (= 1.4.2-0ubuntu5), sed (= 4.8-1), sensible-utils (= 0.0.17), sysvinit-utils (= 2.96-7ubuntu2), t1utils (= 1.41-4build1), tar (= 1.34+dfsg-1build2), tex-common (= 6.17), texlive-base (= 2021.20210921-1), texlive-bibtex-extra (= 2021.20210921-1), texlive-binaries (= 2021.20210626.59705-1), texlive-latex-base (= 2021.20210921-1), tzdata (= 2021e-1ubuntu1), ucf (= 3.0043), unzip (= 6.0-26ubuntu2), util-linux (= 2.37.2-4ubuntu1), x11-common (= 1:7.7+23ubuntu1), xauth (= 1:1.1-1build1), xdg-utils (= 1.1.3-4.1ubuntu1), xz-utils (= 5.2.5-2build1), zip (= 3.0-12build1), zlib1g (= 1:1.2.11.dfsg-2ubuntu7), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu7) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1637874966" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-bioc-ioniser_2.18.0+dfsg-1_all.deb ------------------------------------ new Debian package, version 2.0. size 1147546 bytes: control archive=1874 bytes. 1183 bytes, 20 lines control 2851 bytes, 35 lines md5sums Package: r-bioc-ioniser Version: 2.18.0+dfsg-1 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian R Packages Maintainers Installed-Size: 2082 Depends: r-base-core (>= 4.1.2-1ubuntu1), r-api-4.0, r-api-bioc-3.14, r-bioc-rhdf5, r-cran-dplyr, r-cran-magrittr, r-cran-tidyr, r-bioc-shortread, r-bioc-biostrings, r-cran-ggplot2, r-bioc-biocgenerics, r-bioc-xvector, r-cran-tibble, r-bioc-biocparallel, r-cran-bit64, r-cran-stringr Recommends: r-cran-testthat Suggests: r-bioc-biocstyle, r-cran-knitr, r-cran-rmarkdown, r-cran-gridextra Section: gnu-r Priority: optional Homepage: https://bioconductor.org/packages/IONiseR/ Description: Quality Assessment Tools for Oxford Nanopore MinION data IONiseR provides tools for the quality assessment of Oxford Nanopore MinION data. It extracts summary statistics from a set of fast5 files and can be used either before or after base calling. In addition to standard summaries of the read-types produced, it provides a number of plots for visualising metrics relative to experiment run time or spatially over the surface of a flowcell. drwxr-xr-x root/root 0 2021-11-25 21:16 ./ drwxr-xr-x root/root 0 2021-11-25 21:16 ./usr/ drwxr-xr-x root/root 0 2021-11-25 21:16 ./usr/lib/ drwxr-xr-x root/root 0 2021-11-25 21:16 ./usr/lib/R/ drwxr-xr-x root/root 0 2021-11-25 21:16 ./usr/lib/R/site-library/ drwxr-xr-x root/root 0 2021-11-25 21:16 ./usr/lib/R/site-library/IONiseR/ -rw-r--r-- root/root 1709 2021-11-25 21:16 ./usr/lib/R/site-library/IONiseR/DESCRIPTION -rw-r--r-- root/root 1893 2021-11-25 21:16 ./usr/lib/R/site-library/IONiseR/INDEX drwxr-xr-x root/root 0 2021-11-25 21:16 ./usr/lib/R/site-library/IONiseR/Meta/ -rw-r--r-- root/root 1252 2021-11-25 21:16 ./usr/lib/R/site-library/IONiseR/Meta/Rd.rds -rw-r--r-- root/root 123 2021-11-25 21:16 ./usr/lib/R/site-library/IONiseR/Meta/features.rds -rw-r--r-- root/root 1141 2021-11-25 21:16 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build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: n/a Build-Time: 96 Distribution: jammy-proposed Host Architecture: amd64 Install-Time: 100 Job: r-bioc-ioniser_2.18.0+dfsg-1.dsc Machine Architecture: amd64 Package: r-bioc-ioniser Package-Time: 197 Source-Version: 2.18.0+dfsg-1 Space: n/a Status: successful Version: 2.18.0+dfsg-1 -------------------------------------------------------------------------------- Finished at 2021-11-26T08:49:29Z Build needed 00:03:17, no disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=jammy --arch=amd64 PACKAGEBUILD-22452397 Scanning for processes to kill in build PACKAGEBUILD-22452397