https://launchpad.net/ubuntu/+source/r-bioc-iranges/2.16.0-1/+build/15634895 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-arm64-037 4.4.0-138-generic #164-Ubuntu SMP Tue Oct 2 17:15:48 UTC 2018 aarch64 Buildd toolchain package versions: launchpad-buildd_165 python-lpbuildd_165 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.5 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 10 Nov 01:29:31 ntpdate[1819]: adjust time server 10.211.37.1 offset -0.034148 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=disco --arch=arm64 PACKAGEBUILD-15634895 /home/buildd/filecache-default/bf137a8dadabbe066906202a7cb9d7a8e3a99968 Creating target for build PACKAGEBUILD-15634895 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=disco --arch=arm64 PACKAGEBUILD-15634895 Starting target for build PACKAGEBUILD-15634895 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=disco --arch=arm64 PACKAGEBUILD-15634895 'deb http://ftpmaster.internal/ubuntu disco main universe' 'deb http://ftpmaster.internal/ubuntu disco-security main universe' 'deb http://ftpmaster.internal/ubuntu disco-updates main universe' 'deb http://ftpmaster.internal/ubuntu disco-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-15634895 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=disco --arch=arm64 PACKAGEBUILD-15634895 Updating target for build PACKAGEBUILD-15634895 Get:1 http://ftpmaster.internal/ubuntu disco InRelease [243 kB] Get:2 http://ftpmaster.internal/ubuntu disco-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu disco-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed InRelease [93.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main arm64 Packages [975 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main Translation-en [513 kB] Get:7 http://ftpmaster.internal/ubuntu disco/universe arm64 Packages [8520 kB] Get:8 http://ftpmaster.internal/ubuntu disco/universe Translation-en [5068 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 Packages [119 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main Translation-en [69.3 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/universe arm64 Packages [646 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/universe Translation-en [529 kB] Fetched 16.9 MB in 6s (2980 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libgdbm6 libperl5.28 perl-modules-5.28 The following packages will be upgraded: base-files binutils binutils-aarch64-linux-gnu binutils-common cpp cpp-8 dash dmsetup findutils g++ g++-8 gcc gcc-8 gcc-8-base hostname init init-system-helpers libapparmor1 libasan5 libatomic1 libaudit-common libaudit1 libbinutils libcap-ng0 libcc1-0 libdb5.3 libdevmapper1.02.1 libgcc-8-dev libgcc1 libgdbm-compat4 libgomp1 libgpg-error0 libitm1 libkmod2 liblsan0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsqlite3-0 libstdc++-8-dev libstdc++6 libsystemd0 libtsan0 libubsan1 libudev1 linux-libc-dev lockfile-progs perl perl-base sed systemd systemd-sysv tzdata 54 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 40.0 MB of archives. After this operation, 48.4 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu disco/main arm64 base-files arm64 10.1ubuntu8 [60.1 kB] Get:2 http://ftpmaster.internal/ubuntu disco/main arm64 dash arm64 0.5.10.2-1 [88.0 kB] Get:3 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 findutils arm64 4.6.0+git+20181018-1 [290 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main arm64 hostname arm64 3.21 [10.9 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main arm64 perl-modules-5.28 all 5.28.0-3 [2818 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main arm64 libgdbm6 arm64 1.18.1-1 [26.8 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main arm64 libgdbm-compat4 arm64 1.18.1-1 [6016 B] Get:8 http://ftpmaster.internal/ubuntu disco/main arm64 libperl5.28 arm64 5.28.0-3 [3667 kB] Get:9 http://ftpmaster.internal/ubuntu disco/main arm64 perl arm64 5.28.0-3 [204 kB] Get:10 http://ftpmaster.internal/ubuntu disco/main arm64 perl-base arm64 5.28.0-3 [1398 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libdb5.3 arm64 5.3.28+dfsg1-0.2 [616 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 sed arm64 4.5-2 [182 kB] Get:13 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 init-system-helpers all 1.55 [38.5 kB] Get:14 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 systemd-sysv arm64 239-7ubuntu10.1 [9404 B] Get:15 http://ftpmaster.internal/ubuntu disco/main arm64 libapparmor1 arm64 2.12-4ubuntu10 [29.1 kB] Get:16 http://ftpmaster.internal/ubuntu disco/main arm64 libaudit-common all 1:2.8.3-1ubuntu3 [4068 B] Get:17 http://ftpmaster.internal/ubuntu disco/main arm64 libcap-ng0 arm64 0.7.9-1build1 [10.5 kB] Get:18 http://ftpmaster.internal/ubuntu disco/main arm64 libaudit1 arm64 1:2.8.3-1ubuntu3 [38.1 kB] Get:19 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libgpg-error0 arm64 1.32-3 [53.4 kB] Get:20 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libkmod2 arm64 25-1ubuntu1.1 [38.7 kB] Get:21 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 systemd arm64 239-7ubuntu10.1 [2757 kB] Get:22 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libsystemd0 arm64 239-7ubuntu10.1 [195 kB] Get:23 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 init arm64 1.55 [6476 B] Get:24 http://ftpmaster.internal/ubuntu disco/main arm64 libcc1-0 arm64 8.2.0-9ubuntu1 [36.3 kB] Get:25 http://ftpmaster.internal/ubuntu disco/main arm64 libgomp1 arm64 8.2.0-9ubuntu1 [69.6 kB] Get:26 http://ftpmaster.internal/ubuntu disco/main arm64 libitm1 arm64 8.2.0-9ubuntu1 [24.4 kB] Get:27 http://ftpmaster.internal/ubuntu disco/main arm64 libatomic1 arm64 8.2.0-9ubuntu1 [9124 B] Get:28 http://ftpmaster.internal/ubuntu disco/main arm64 libasan5 arm64 8.2.0-9ubuntu1 [336 kB] Get:29 http://ftpmaster.internal/ubuntu disco/main arm64 liblsan0 arm64 8.2.0-9ubuntu1 [121 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main arm64 libtsan0 arm64 8.2.0-9ubuntu1 [269 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main arm64 libubsan1 arm64 8.2.0-9ubuntu1 [113 kB] Get:32 http://ftpmaster.internal/ubuntu disco/main arm64 gcc-8-base arm64 8.2.0-9ubuntu1 [18.6 kB] Get:33 http://ftpmaster.internal/ubuntu disco/main arm64 libstdc++6 arm64 8.2.0-9ubuntu1 [372 kB] Get:34 http://ftpmaster.internal/ubuntu disco/main arm64 g++-8 arm64 8.2.0-9ubuntu1 [6548 kB] Get:35 http://ftpmaster.internal/ubuntu disco/main arm64 libstdc++-8-dev arm64 8.2.0-9ubuntu1 [1513 kB] Get:36 http://ftpmaster.internal/ubuntu disco/main arm64 libgcc-8-dev arm64 8.2.0-9ubuntu1 [857 kB] Get:37 http://ftpmaster.internal/ubuntu disco/main arm64 gcc-8 arm64 8.2.0-9ubuntu1 [6470 kB] Get:38 http://ftpmaster.internal/ubuntu disco/main arm64 cpp-8 arm64 8.2.0-9ubuntu1 [5713 kB] Get:39 http://ftpmaster.internal/ubuntu disco/main arm64 libgcc1 arm64 1:8.2.0-9ubuntu1 [34.3 kB] Get:40 http://ftpmaster.internal/ubuntu disco/main arm64 libbinutils arm64 2.31.1-7ubuntu1 [462 kB] Get:41 http://ftpmaster.internal/ubuntu disco/main arm64 binutils-common arm64 2.31.1-7ubuntu1 [194 kB] Get:42 http://ftpmaster.internal/ubuntu disco/main arm64 binutils arm64 2.31.1-7ubuntu1 [3364 B] Get:43 http://ftpmaster.internal/ubuntu disco/main arm64 binutils-aarch64-linux-gnu arm64 2.31.1-7ubuntu1 [2173 kB] Get:44 http://ftpmaster.internal/ubuntu disco/main arm64 libselinux1 arm64 2.8-1build2 [64.9 kB] Get:45 http://ftpmaster.internal/ubuntu disco/main arm64 libsemanage-common all 2.8-1build2 [6892 B] Get:46 http://ftpmaster.internal/ubuntu disco/main arm64 libsemanage1 arm64 2.8-1build2 [79.7 kB] Get:47 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libudev1 arm64 239-7ubuntu10.1 [50.1 kB] Get:48 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libseccomp2 arm64 2.3.3-3ubuntu2 [38.6 kB] Get:49 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libdevmapper1.02.1 arm64 2:1.02.145-4.1ubuntu4 [109 kB] Get:50 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 dmsetup arm64 2:1.02.145-4.1ubuntu4 [67.6 kB] Get:51 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libsqlite3-0 arm64 3.25.3-1 [490 kB] Get:52 http://ftpmaster.internal/ubuntu disco/main arm64 tzdata all 2018g-1 [188 kB] Get:53 http://ftpmaster.internal/ubuntu disco/main arm64 g++ arm64 4:8.2.0-2ubuntu2 [1592 B] Get:54 http://ftpmaster.internal/ubuntu disco/main arm64 gcc arm64 4:8.2.0-2ubuntu2 [5232 B] Get:55 http://ftpmaster.internal/ubuntu disco/main arm64 cpp arm64 4:8.2.0-2ubuntu2 [27.6 kB] Get:56 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 linux-libc-dev arm64 4.18.0-11.12 [1019 kB] Get:57 http://ftpmaster.internal/ubuntu disco/main arm64 lockfile-progs arm64 0.1.18 [9748 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 40.0 MB in 1s (32.0 MB/s) (Reading database ... 12627 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu8_arm64.deb ... Unpacking base-files (10.1ubuntu8) over (10.1ubuntu7) ... Setting up base-files (10.1ubuntu8) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12627 files and directories currently installed.) Preparing to unpack .../dash_0.5.10.2-1_arm64.deb ... Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' Unpacking dash (0.5.10.2-1) over (0.5.8-2.10) ... Setting up dash (0.5.10.2-1) ... 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Setting up liblsan0:arm64 (8.2.0-9ubuntu1) ... Setting up libgdbm6:arm64 (1.18.1-1) ... Setting up binutils-common:arm64 (2.31.1-7ubuntu1) ... Setting up perl-modules-5.28 (5.28.0-3) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up libsqlite3-0:arm64 (3.25.3-1) ... Setting up dmsetup (2:1.02.145-4.1ubuntu4) ... Setting up libgdbm-compat4:arm64 (1.18.1-1) ... Setting up lockfile-progs (0.1.18) ... Setting up libasan5:arm64 (8.2.0-9ubuntu1) ... Setting up libitm1:arm64 (8.2.0-9ubuntu1) ... Setting up libubsan1:arm64 (8.2.0-9ubuntu1) ... Setting up libbinutils:arm64 (2.31.1-7ubuntu1) ... Setting up libperl5.28:arm64 (5.28.0-3) ... Setting up perl (5.28.0-3) ... Setting up binutils-aarch64-linux-gnu (2.31.1-7ubuntu1) ... Setting up libgcc-8-dev:arm64 (8.2.0-9ubuntu1) ... Setting up binutils (2.31.1-7ubuntu1) ... Setting up libstdc++-8-dev:arm64 (8.2.0-9ubuntu1) ... Setting up gcc-8 (8.2.0-9ubuntu1) ... Setting up g++-8 (8.2.0-9ubuntu1) ... Setting up gcc (4:8.2.0-2ubuntu2) ... Setting up g++ (4:8.2.0-2ubuntu2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15634895 arm64 disco-proposed -c chroot:build-PACKAGEBUILD-15634895 --arch=arm64 --dist=disco-proposed --nolog r-bioc-iranges_2.16.0-1.dsc Initiating build PACKAGEBUILD-15634895 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-138-generic #164-Ubuntu SMP Tue Oct 2 17:15:48 UTC 2018 aarch64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-037.buildd +==============================================================================+ | r-bioc-iranges 2.16.0-1 (arm64) 10 Nov 2018 01:30 | +==============================================================================+ Package: r-bioc-iranges Version: 2.16.0-1 Source Version: 2.16.0-1 Distribution: disco-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 I: NOTICE: Log filtering will replace 'build/r-bioc-iranges-UN1gmv/r-bioc-iranges-2.16.0' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-iranges-UN1gmv' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15634895/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-bioc-iranges_2.16.0-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-kcwnuY/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-kcwnuY/apt_archive ./ InRelease Get:2 copy:/<>/resolver-kcwnuY/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-kcwnuY/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-kcwnuY/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-kcwnuY/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (123 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-kcwnuY/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14518 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.25.3), r-bioc-s4vectors (>= 0.19.11) Filtered Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.25.3), r-bioc-s4vectors (>= 0.19.11) dpkg-deb: building package 'sbuild-build-depends-r-bioc-iranges-dummy' in '/<>/resolver-WDsCKL/apt_archive/sbuild-build-depends-r-bioc-iranges-dummy.deb'. Ign:1 copy:/<>/resolver-WDsCKL/apt_archive ./ InRelease Get:2 copy:/<>/resolver-WDsCKL/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-WDsCKL/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-WDsCKL/apt_archive ./ Sources [263 B] Get:5 copy:/<>/resolver-WDsCKL/apt_archive ./ Packages [577 B] Fetched 2959 B in 0s (125 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install r-bioc-iranges build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-8 gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 groff-base icu-devtools intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libelf1 libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-8-dev libgfortran5 libgirepository-1.0-1 libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libgraphite2-3 libgraphite2-dev libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu-dev libicu-le-hb-dev libicu-le-hb0 libicu60 libiculx60 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libmpdec2 libncurses-dev libncurses5-dev libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db mime-support pkg-config po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3.7 python3.7-minimal r-base-core r-base-dev r-bioc-biocgenerics r-bioc-s4vectors ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc gfortran-8-doc libgfortran5-dbg libcoarrays-dev groff liblapack-doc libglib2.0-doc libgdk-pixbuf2.0-bin | libgdk-pixbuf2.0-dev libxml2-utils libgraphite2-utils krb5-doc krb5-user icu-doc liblzma-doc ncurses-doc readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.7-venv python3.7-doc binfmt-support ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo r-bioc-biobase r-bioc-iranges r-bioc-genomicranges r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-bioc-summarizedexperiment r-cran-matrix r-bioc-delayedarray r-bioc-shortread r-bioc-graph r-cran-data.table Recommended packages: devscripts curl | wget | lynx bzip2-doc libarchive-cpio-perl shared-mime-info xdg-user-dirs krb5-locales libpng-tools publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl r-recommended r-doc-html r-cran-runit r-bioc-iranges r-bioc-genomicranges libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-8 gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 groff-base icu-devtools intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libelf1 libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-8-dev libgfortran5 libgirepository-1.0-1 libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libgraphite2-3 libgraphite2-dev libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu-dev libicu-le-hb-dev libicu-le-hb0 libicu60 libiculx60 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libmpdec2 libncurses-dev libncurses5-dev libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db mime-support pkg-config po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3.7 python3.7-minimal r-base-core r-base-dev r-bioc-biocgenerics r-bioc-s4vectors sbuild-build-depends-r-bioc-iranges-dummy ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 158 newly installed, 0 to remove and 0 not upgraded. Need to get 78.1 MB of archives. After this operation, 265 MB of additional disk space will be used. Get:1 copy:/<>/resolver-WDsCKL/apt_archive ./ sbuild-build-depends-r-bioc-iranges-dummy 0.invalid.0 [908 B] Get:2 http://ftpmaster.internal/ubuntu disco/main arm64 libpython3.7-minimal arm64 3.7.1-1 [543 kB] Get:3 http://ftpmaster.internal/ubuntu disco/main arm64 libexpat1 arm64 2.2.6-1 [68.2 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main arm64 python3.7-minimal arm64 3.7.1-1 [1358 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main arm64 python3-minimal arm64 3.7.1-1ubuntu1 [23.6 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main arm64 mime-support all 3.60ubuntu1 [30.1 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main arm64 libmpdec2 arm64 2.4.2-2 [74.0 kB] Get:8 http://ftpmaster.internal/ubuntu disco/main arm64 libpython3.7-stdlib arm64 3.7.1-1 [1637 kB] Get:9 http://ftpmaster.internal/ubuntu disco/main arm64 python3.7 arm64 3.7.1-1 [272 kB] Get:10 http://ftpmaster.internal/ubuntu disco/main arm64 libpython3-stdlib arm64 3.7.1-1ubuntu1 [7128 B] Get:11 http://ftpmaster.internal/ubuntu disco/main arm64 python3 arm64 3.7.1-1ubuntu1 [47.2 kB] Get:12 http://ftpmaster.internal/ubuntu disco/main arm64 libxau6 arm64 1:1.0.8-1 [7590 B] Get:13 http://ftpmaster.internal/ubuntu disco/main arm64 libbsd0 arm64 0.9.1-1 [39.4 kB] Get:14 http://ftpmaster.internal/ubuntu disco/main arm64 libxdmcp6 arm64 1:1.1.2-3 [9694 B] Get:15 http://ftpmaster.internal/ubuntu disco/main arm64 libxcb1 arm64 1.13.1-1 [43.5 kB] Get:16 http://ftpmaster.internal/ubuntu disco/main arm64 libx11-data all 2:1.6.7-1 [113 kB] Get:17 http://ftpmaster.internal/ubuntu disco/main arm64 libx11-6 arm64 2:1.6.7-1 [552 kB] Get:18 http://ftpmaster.internal/ubuntu disco/main arm64 libxext6 arm64 2:1.3.3-1 [25.4 kB] Get:19 http://ftpmaster.internal/ubuntu disco/main arm64 bsdmainutils arm64 11.1.2ubuntu2 [175 kB] Get:20 http://ftpmaster.internal/ubuntu disco/main arm64 groff-base arm64 1.22.3-10 [1152 kB] Get:21 http://ftpmaster.internal/ubuntu disco/main arm64 libpipeline1 arm64 1.5.0-2 [24.2 kB] Get:22 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 man-db arm64 2.8.4-3 [1017 kB] Get:23 http://ftpmaster.internal/ubuntu disco/main arm64 x11-common all 1:7.7+19ubuntu8 [22.5 kB] Get:24 http://ftpmaster.internal/ubuntu disco/main arm64 libice6 arm64 2:1.0.9-2 [33.7 kB] Get:25 http://ftpmaster.internal/ubuntu disco/main arm64 libsm6 arm64 2:1.2.2-1 [13.7 kB] Get:26 http://ftpmaster.internal/ubuntu disco/main arm64 libmagic-mgc arm64 1:5.34-2 [197 kB] Get:27 http://ftpmaster.internal/ubuntu disco/main arm64 libmagic1 arm64 1:5.34-2 [69.5 kB] Get:28 http://ftpmaster.internal/ubuntu disco/main arm64 file arm64 1:5.34-2 [22.9 kB] Get:29 http://ftpmaster.internal/ubuntu disco/main arm64 libglib2.0-0 arm64 2.58.1-2 [1106 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main arm64 libgirepository-1.0-1 arm64 1.58.0-1build1 [74.7 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main arm64 gir1.2-glib-2.0 arm64 1.58.0-1build1 [132 kB] Get:32 http://ftpmaster.internal/ubuntu disco/main arm64 libelf1 arm64 0.170-0.5.0ubuntu1 [43.4 kB] Get:33 http://ftpmaster.internal/ubuntu disco/main arm64 libfribidi0 arm64 1.0.5-3 [26.2 kB] Get:34 http://ftpmaster.internal/ubuntu disco/main arm64 libglib2.0-data all 2.58.1-2 [5476 B] Get:35 http://ftpmaster.internal/ubuntu disco/main arm64 libicu60 arm64 60.2-6ubuntu1 [7987 kB] Get:36 http://ftpmaster.internal/ubuntu disco/main arm64 libxml2 arm64 2.9.4+dfsg1-7ubuntu2 [562 kB] Get:37 http://ftpmaster.internal/ubuntu disco/main arm64 ucf all 3.0038 [50.5 kB] Get:38 http://ftpmaster.internal/ubuntu disco/main arm64 gettext-base arm64 0.19.8.1-8 [48.1 kB] Get:39 http://ftpmaster.internal/ubuntu disco/main arm64 libkrb5support0 arm64 1.16-2ubuntu1 [30.4 kB] Get:40 http://ftpmaster.internal/ubuntu disco/main arm64 libk5crypto3 arm64 1.16-2ubuntu1 [86.5 kB] Get:41 http://ftpmaster.internal/ubuntu disco/main arm64 libkeyutils1 arm64 1.5.9-9.3 [9512 B] Get:42 http://ftpmaster.internal/ubuntu disco/main arm64 libkrb5-3 arm64 1.16-2ubuntu1 [265 kB] Get:43 http://ftpmaster.internal/ubuntu disco/main arm64 libgssapi-krb5-2 arm64 1.16-2ubuntu1 [113 kB] Get:44 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libpsl5 arm64 0.20.2-2 [49.9 kB] Get:45 http://ftpmaster.internal/ubuntu disco/main arm64 libxmuu1 arm64 2:1.1.2-2 [9502 B] Get:46 http://ftpmaster.internal/ubuntu disco/main arm64 xauth arm64 1:1.0.10-1 [22.4 kB] Get:47 http://ftpmaster.internal/ubuntu disco/main arm64 libsigsegv2 arm64 2.12-2 [13.3 kB] Get:48 http://ftpmaster.internal/ubuntu disco/main arm64 m4 arm64 1.4.18-1ubuntu1 [194 kB] Get:49 http://ftpmaster.internal/ubuntu disco/main arm64 autoconf all 2.69-11 [322 kB] Get:50 http://ftpmaster.internal/ubuntu disco/main arm64 autotools-dev all 20180224.1 [39.6 kB] Get:51 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 automake all 1:1.16.1-4 [522 kB] Get:52 http://ftpmaster.internal/ubuntu disco/main arm64 autopoint all 0.19.8.1-8 [412 kB] Get:53 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 dctrl-tools arm64 2.24-3 [59.1 kB] Get:54 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libtool all 2.4.6-6 [195 kB] Get:55 http://ftpmaster.internal/ubuntu disco/main arm64 dh-autoreconf all 19 [16.1 kB] Get:56 http://ftpmaster.internal/ubuntu disco/main arm64 libarchive-zip-perl all 1.64-1 [84.9 kB] Get:57 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libfile-stripnondeterminism-perl all 0.044-1 [15.0 kB] Get:58 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 dh-strip-nondeterminism all 0.044-1 [5124 B] Get:59 http://ftpmaster.internal/ubuntu disco/main arm64 dwz arm64 0.12-2 [68.1 kB] Get:60 http://ftpmaster.internal/ubuntu disco/main arm64 libcroco3 arm64 0.6.12-2 [68.2 kB] Get:61 http://ftpmaster.internal/ubuntu disco/main arm64 gettext arm64 0.19.8.1-8 [853 kB] Get:62 http://ftpmaster.internal/ubuntu disco/main arm64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:63 http://ftpmaster.internal/ubuntu disco/main arm64 po-debconf all 1.0.20 [232 kB] Get:64 http://ftpmaster.internal/ubuntu disco/main arm64 debhelper all 11.3.2ubuntu1 [883 kB] Get:65 http://ftpmaster.internal/ubuntu disco/main arm64 zip arm64 3.0-11build1 [146 kB] Get:66 http://ftpmaster.internal/ubuntu disco/main arm64 unzip arm64 6.0-21ubuntu1 [149 kB] Get:67 http://ftpmaster.internal/ubuntu disco/main arm64 libpaper1 arm64 1.1.24+nmu5ubuntu1 [13.0 kB] Get:68 http://ftpmaster.internal/ubuntu disco/main arm64 libpaper-utils arm64 1.1.24+nmu5ubuntu1 [8178 B] Get:69 http://ftpmaster.internal/ubuntu disco/main arm64 xdg-utils all 1.1.3-1ubuntu2 [60.5 kB] Get:70 http://ftpmaster.internal/ubuntu disco/main arm64 libblas3 arm64 3.8.0-1build1 [89.8 kB] Get:71 http://ftpmaster.internal/ubuntu disco/main arm64 libfreetype6 arm64 2.8.1-2ubuntu2 [290 kB] Get:72 http://ftpmaster.internal/ubuntu disco/main arm64 fonts-dejavu-core all 2.37-1 [1041 kB] Get:73 http://ftpmaster.internal/ubuntu disco/main arm64 fontconfig-config all 2.13.0-5ubuntu3 [28.4 kB] Get:74 http://ftpmaster.internal/ubuntu disco/main arm64 libfontconfig1 arm64 2.13.0-5ubuntu3 [109 kB] Get:75 http://ftpmaster.internal/ubuntu disco/main arm64 libpixman-1-0 arm64 0.34.0-2 [115 kB] Get:76 http://ftpmaster.internal/ubuntu disco/main arm64 libxcb-render0 arm64 1.13.1-1 [14.5 kB] Get:77 http://ftpmaster.internal/ubuntu disco/main arm64 libxcb-shm0 arm64 1.13.1-1 [5632 B] Get:78 http://ftpmaster.internal/ubuntu disco/main arm64 libxrender1 arm64 1:0.9.10-1 [16.1 kB] Get:79 http://ftpmaster.internal/ubuntu disco/main arm64 libcairo2 arm64 1.16.0-1 [539 kB] Get:80 http://ftpmaster.internal/ubuntu disco/main arm64 libroken18-heimdal arm64 7.5.0+dfsg-2 [35.4 kB] Get:81 http://ftpmaster.internal/ubuntu disco/main arm64 libasn1-8-heimdal arm64 7.5.0+dfsg-2 [130 kB] Get:82 http://ftpmaster.internal/ubuntu disco/main arm64 libheimbase1-heimdal arm64 7.5.0+dfsg-2 [24.9 kB] Get:83 http://ftpmaster.internal/ubuntu disco/main arm64 libhcrypto4-heimdal arm64 7.5.0+dfsg-2 [75.2 kB] Get:84 http://ftpmaster.internal/ubuntu disco/main arm64 libwind0-heimdal arm64 7.5.0+dfsg-2 [46.9 kB] Get:85 http://ftpmaster.internal/ubuntu disco/main arm64 libhx509-5-heimdal arm64 7.5.0+dfsg-2 [88.5 kB] Get:86 http://ftpmaster.internal/ubuntu disco/main arm64 libkrb5-26-heimdal arm64 7.5.0+dfsg-2 [170 kB] Get:87 http://ftpmaster.internal/ubuntu disco/main arm64 libheimntlm0-heimdal arm64 7.5.0+dfsg-2 [13.4 kB] Get:88 http://ftpmaster.internal/ubuntu disco/main arm64 libgssapi3-heimdal arm64 7.5.0+dfsg-2 [79.3 kB] Get:89 http://ftpmaster.internal/ubuntu disco/main arm64 libsasl2-modules-db arm64 2.1.27~101-g0780600+dfsg-3ubuntu2 [13.4 kB] Get:90 http://ftpmaster.internal/ubuntu disco/main arm64 libsasl2-2 arm64 2.1.27~101-g0780600+dfsg-3ubuntu2 [43.1 kB] Get:91 http://ftpmaster.internal/ubuntu disco/main arm64 libldap-common all 2.4.46+dfsg-5ubuntu2 [16.6 kB] Get:92 http://ftpmaster.internal/ubuntu disco/main arm64 libldap-2.4-2 arm64 2.4.46+dfsg-5ubuntu2 [145 kB] Get:93 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libnghttp2-14 arm64 1.34.0-1 [75.9 kB] Get:94 http://ftpmaster.internal/ubuntu disco/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2 [49.8 kB] Get:95 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libcurl4 arm64 7.61.0-1ubuntu2.2 [199 kB] Get:96 http://ftpmaster.internal/ubuntu disco/main arm64 libjpeg-turbo8 arm64 2.0.0-0ubuntu2 [100 kB] Get:97 http://ftpmaster.internal/ubuntu disco/main arm64 libjpeg8 arm64 8c-2ubuntu8 [2198 B] Get:98 http://ftpmaster.internal/ubuntu disco/main arm64 libgfortran5 arm64 8.2.0-9ubuntu1 [308 kB] Get:99 http://ftpmaster.internal/ubuntu disco/main arm64 liblapack3 arm64 3.8.0-1build1 [1478 kB] Get:100 http://ftpmaster.internal/ubuntu disco/main arm64 fontconfig arm64 2.13.0-5ubuntu3 [169 kB] Get:101 http://ftpmaster.internal/ubuntu disco/main arm64 libthai-data all 0.1.28-1 [134 kB] Get:102 http://ftpmaster.internal/ubuntu disco/main arm64 libdatrie1 arm64 0.2.12-1 [15.9 kB] Get:103 http://ftpmaster.internal/ubuntu disco/main arm64 libthai0 arm64 0.1.28-1 [16.7 kB] Get:104 http://ftpmaster.internal/ubuntu disco/main arm64 libpango-1.0-0 arm64 1.42.4-3 [145 kB] Get:105 http://ftpmaster.internal/ubuntu disco/main arm64 libgraphite2-3 arm64 1.3.12-1 [68.7 kB] Get:106 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libharfbuzz0b arm64 1.9.0-1 [253 kB] Get:107 http://ftpmaster.internal/ubuntu disco/main arm64 libpangoft2-1.0-0 arm64 1.42.4-3 [33.2 kB] Get:108 http://ftpmaster.internal/ubuntu disco/main arm64 libpangocairo-1.0-0 arm64 1.42.4-3 [21.4 kB] Get:109 http://ftpmaster.internal/ubuntu disco/main arm64 libtcl8.6 arm64 8.6.8+dfsg-4 [783 kB] Get:110 http://ftpmaster.internal/ubuntu disco/main arm64 libjbig0 arm64 2.1-3.1build1 [24.0 kB] Get:111 http://ftpmaster.internal/ubuntu disco/main arm64 libwebp6 arm64 0.6.1-2 [155 kB] Get:112 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libtiff5 arm64 4.0.9+git181026-1 [146 kB] Get:113 http://ftpmaster.internal/ubuntu disco/main arm64 libxft2 arm64 2.3.2-2 [32.5 kB] Get:114 http://ftpmaster.internal/ubuntu disco/main arm64 libxss1 arm64 1:1.2.3-1 [8080 B] Get:115 http://ftpmaster.internal/ubuntu disco/main arm64 libtk8.6 arm64 8.6.8-4 [615 kB] Get:116 http://ftpmaster.internal/ubuntu disco/main arm64 libxt6 arm64 1:1.1.5-1 [128 kB] Get:117 http://ftpmaster.internal/ubuntu disco/universe arm64 r-base-core arm64 3.5.1-1build1 [23.6 MB] Get:118 http://ftpmaster.internal/ubuntu disco/main arm64 libgfortran-8-dev arm64 8.2.0-9ubuntu1 [355 kB] Get:119 http://ftpmaster.internal/ubuntu disco/main arm64 gfortran-8 arm64 8.2.0-9ubuntu1 [6110 kB] Get:120 http://ftpmaster.internal/ubuntu disco/main arm64 gfortran arm64 4:8.2.0-2ubuntu2 [1364 B] Get:121 http://ftpmaster.internal/ubuntu disco/main arm64 libblas-dev arm64 3.8.0-1build1 [92.3 kB] Get:122 http://ftpmaster.internal/ubuntu disco/main arm64 liblapack-dev arm64 3.8.0-1build1 [1511 kB] Get:123 http://ftpmaster.internal/ubuntu disco/main arm64 libncurses-dev arm64 6.1+20180210-4ubuntu1 [304 kB] Get:124 http://ftpmaster.internal/ubuntu disco/main arm64 libncurses5-dev arm64 6.1+20180210-4ubuntu1 [972 B] Get:125 http://ftpmaster.internal/ubuntu disco/main arm64 libreadline-dev arm64 7.0-5 [127 kB] Get:126 http://ftpmaster.internal/ubuntu disco/main arm64 libjpeg-turbo8-dev arm64 2.0.0-0ubuntu2 [214 kB] Get:127 http://ftpmaster.internal/ubuntu disco/main arm64 libjpeg8-dev arm64 8c-2ubuntu8 [1550 B] Get:128 http://ftpmaster.internal/ubuntu disco/main arm64 libjpeg-dev arm64 8c-2ubuntu8 [1546 B] Get:129 http://ftpmaster.internal/ubuntu disco/main arm64 libpcre16-3 arm64 2:8.39-11 [125 kB] Get:130 http://ftpmaster.internal/ubuntu disco/main arm64 libpcre32-3 arm64 2:8.39-11 [119 kB] Get:131 http://ftpmaster.internal/ubuntu disco/main arm64 libpcrecpp0v5 arm64 2:8.39-11 [15.0 kB] Get:132 http://ftpmaster.internal/ubuntu disco/main arm64 libpcre3-dev arm64 2:8.39-11 [467 kB] Get:133 http://ftpmaster.internal/ubuntu disco/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-0ubuntu2 [171 kB] Get:134 http://ftpmaster.internal/ubuntu disco/main arm64 libpng-dev arm64 1.6.34-2 [165 kB] Get:135 http://ftpmaster.internal/ubuntu disco/main arm64 libbz2-dev arm64 1.0.6-9 [31.0 kB] Get:136 http://ftpmaster.internal/ubuntu disco/main arm64 liblzma-dev arm64 5.2.2-1.3 [137 kB] Get:137 http://ftpmaster.internal/ubuntu disco/main arm64 libicu-le-hb0 arm64 1.0.3+git161113-5 [14.5 kB] Get:138 http://ftpmaster.internal/ubuntu disco/main arm64 libiculx60 arm64 60.2-6ubuntu1 [18.7 kB] Get:139 http://ftpmaster.internal/ubuntu disco/main arm64 icu-devtools arm64 60.2-6ubuntu1 [173 kB] Get:140 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libharfbuzz-icu0 arm64 1.9.0-1 [5800 B] Get:141 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libharfbuzz-gobject0 arm64 1.9.0-1 [13.2 kB] Get:142 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 gir1.2-harfbuzz-0.0 arm64 1.9.0-1 [19.4 kB] Get:143 http://ftpmaster.internal/ubuntu disco/main arm64 libglib2.0-bin arm64 2.58.1-2 [68.3 kB] Get:144 http://ftpmaster.internal/ubuntu disco/main arm64 python3-lib2to3 all 3.7.1-1ubuntu3 [76.5 kB] Get:145 http://ftpmaster.internal/ubuntu disco/main arm64 python3-distutils all 3.7.1-1ubuntu3 [141 kB] Get:146 http://ftpmaster.internal/ubuntu disco/main arm64 libglib2.0-dev-bin arm64 2.58.1-2 [103 kB] Get:147 http://ftpmaster.internal/ubuntu disco/main arm64 pkg-config arm64 0.29.1-0ubuntu2 [42.8 kB] Get:148 http://ftpmaster.internal/ubuntu disco/main arm64 libglib2.0-dev arm64 2.58.1-2 [1421 kB] Get:149 http://ftpmaster.internal/ubuntu disco/main arm64 libgraphite2-dev arm64 1.3.12-1 [14.7 kB] Get:150 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libharfbuzz-dev arm64 1.9.0-1 [336 kB] Get:151 http://ftpmaster.internal/ubuntu disco/main arm64 libicu-le-hb-dev arm64 1.0.3+git161113-5 [29.8 kB] Get:152 http://ftpmaster.internal/ubuntu disco/main arm64 libicu-dev arm64 60.2-6ubuntu1 [8887 kB] Get:153 http://ftpmaster.internal/ubuntu disco/universe arm64 r-base-dev all 3.5.1-1build1 [4524 B] Get:154 http://ftpmaster.internal/ubuntu disco/main arm64 libfile-which-perl all 1.22-1 [12.0 kB] Get:155 http://ftpmaster.internal/ubuntu disco/universe arm64 libswitch-perl all 2.17-2 [18.8 kB] Get:156 http://ftpmaster.internal/ubuntu disco/universe arm64 dh-r all 20181101 [31.5 kB] Get:157 http://ftpmaster.internal/ubuntu disco-proposed/universe arm64 r-bioc-biocgenerics all 0.28.0-1 [642 kB] Get:158 http://ftpmaster.internal/ubuntu disco-proposed/universe arm64 r-bioc-s4vectors arm64 0.20.0-1 [1810 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 78.1 MB in 5s (15.6 MB/s) Selecting previously unselected package libpython3.7-minimal:arm64. (Reading database ... 14518 files and directories currently installed.) Preparing to unpack .../libpython3.7-minimal_3.7.1-1_arm64.deb ... Unpacking libpython3.7-minimal:arm64 (3.7.1-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.2.6-1_arm64.deb ... Unpacking libexpat1:arm64 (2.2.6-1) ... Selecting previously unselected package python3.7-minimal. Preparing to unpack .../python3.7-minimal_3.7.1-1_arm64.deb ... Unpacking python3.7-minimal (3.7.1-1) ... Setting up libpython3.7-minimal:arm64 (3.7.1-1) ... Setting up libexpat1:arm64 (2.2.6-1) ... Setting up python3.7-minimal (3.7.1-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 14767 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.7.1-1ubuntu1_arm64.deb ... Unpacking python3-minimal (3.7.1-1ubuntu1) ... Selecting previously unselected package mime-support. 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Unpacking libglib2.0-data (2.58.1-2) ... Selecting previously unselected package libicu60:arm64. Preparing to unpack .../024-libicu60_60.2-6ubuntu1_arm64.deb ... Unpacking libicu60:arm64 (60.2-6ubuntu1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../025-libxml2_2.9.4+dfsg1-7ubuntu2_arm64.deb ... Unpacking libxml2:arm64 (2.9.4+dfsg1-7ubuntu2) ... Selecting previously unselected package ucf. Preparing to unpack .../026-ucf_3.0038_all.deb ... Moving old data out of the way Unpacking ucf (3.0038) ... Selecting previously unselected package gettext-base. Preparing to unpack .../027-gettext-base_0.19.8.1-8_arm64.deb ... Unpacking gettext-base (0.19.8.1-8) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../028-libkrb5support0_1.16-2ubuntu1_arm64.deb ... Unpacking libkrb5support0:arm64 (1.16-2ubuntu1) ... Selecting previously unselected package libk5crypto3:arm64. 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Setting up pkg-config (0.29.1-0ubuntu2) ... Setting up libpixman-1-0:arm64 (0.34.0-2) ... Setting up libblas3:arm64 (3.8.0-1build1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up gir1.2-glib-2.0:arm64 (1.58.0-1build1) ... Setting up libjpeg-turbo8-dev:arm64 (2.0.0-0ubuntu2) ... Setting up libglib2.0-data (2.58.1-2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up dwz (0.12-2) ... Setting up autotools-dev (20180224.1) ... Setting up libheimbase1-heimdal:arm64 (7.5.0+dfsg-2) ... Processing triggers for systemd (239-7ubuntu10.1) ... Setting up libfribidi0:arm64 (1.0.5-3) ... Setting up libpcrecpp0v5:arm64 (2:8.39-11) ... Setting up libpcre32-3:arm64 (2:8.39-11) ... Setting up icu-devtools (60.2-6ubuntu1) ... Setting up libpcre16-3:arm64 (2:8.39-11) ... Setting up libtcl8.6:arm64 (8.6.8+dfsg-4) ... Setting up libthai-data (0.1.28-1) ... Setting up liblzma-dev:arm64 (5.2.2-1.3) ... Setting up libxdmcp6:arm64 (1:1.1.2-3) ... Setting up libkeyutils1:arm64 (1.5.9-9.3) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up x11-common (1:7.7+19ubuntu8) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up xdg-utils (1.1.3-1ubuntu2) ... Setting up libncurses-dev:arm64 (6.1+20180210-4ubuntu1) ... Setting up libglib2.0-bin (2.58.1-2) ... Setting up libgfortran5:arm64 (8.2.0-9ubuntu1) ... Setting up libgraphite2-dev:arm64 (1.3.12-1) ... Setting up libx11-data (2:1.6.7-1) ... Setting up libxau6:arm64 (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-8) ... Setting up libmpdec2:arm64 (2.4.2-2) ... Setting up libwebp6:arm64 (0.6.1-2) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.044-1) ... Setting up libjpeg8:arm64 (8c-2ubuntu8) ... Setting up libpaper1:arm64 (1.1.24+nmu5ubuntu1) ... Creating config file /etc/papersize with new version Setting up libk5crypto3:arm64 (1.16-2ubuntu1) ... Setting up libpaper-utils (1.1.24+nmu5ubuntu1) ... Setting up libpcre3-dev:arm64 (2:8.39-11) ... Setting up libpython3.7-stdlib:arm64 (3.7.1-1) ... Setting up fontconfig-config (2.13.0-5ubuntu3) ... Setting up libwind0-heimdal:arm64 (7.5.0+dfsg-2) ... Setting up gettext (0.19.8.1-8) ... Setting up libblas-dev:arm64 (3.8.0-1build1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode Setting up libasn1-8-heimdal:arm64 (7.5.0+dfsg-2) ... 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Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libreadline-dev:arm64 (7.0-5) ... Setting up libice6:arm64 (2:1.0.9-2) ... Setting up man-db (2.8.4-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libkrb5-3:arm64 (1.16-2ubuntu1) ... Setting up libkrb5-26-heimdal:arm64 (7.5.0+dfsg-2) ... Setting up libpng-dev:arm64 (1.6.34-2) ... Setting up libgfortran-8-dev:arm64 (8.2.0-9ubuntu1) ... Setting up libxcb1:arm64 (1.13.1-1) ... Setting up libharfbuzz-gobject0:arm64 (1.9.0-1) ... Setting up libheimntlm0-heimdal:arm64 (7.5.0+dfsg-2) ... Setting up liblapack-dev:arm64 (3.8.0-1build1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode Setting up libtool (2.4.6-6) ... Setting up libpython3-stdlib:arm64 (3.7.1-1ubuntu1) ... Setting up libfontconfig1:arm64 (2.13.0-5ubuntu3) ... Setting up libsm6:arm64 (2:1.2.2-1) ... Setting up libxcb-render0:arm64 (1.13.1-1) ... Setting up libharfbuzz-icu0:arm64 (1.9.0-1) ... Setting up po-debconf (1.0.20) ... Setting up python3 (3.7.1-1ubuntu1) ... Setting up gfortran-8 (8.2.0-9ubuntu1) ... Setting up libicu-le-hb0:arm64 (1.0.3+git161113-5) ... Setting up libx11-6:arm64 (2:1.6.7-1) ... Setting up libxmuu1:arm64 (2:1.1.2-2) ... Setting up libgssapi-krb5-2:arm64 (1.16-2ubuntu1) ... Setting up libiculx60:arm64 (60.2-6ubuntu1) ... Setting up libxcb-shm0:arm64 (1.13.1-1) ... Setting up libxt6:arm64 (1:1.1.5-1) ... Setting up libxrender1:arm64 (1:0.9.10-1) ... Setting up libxft2:arm64 (2.3.2-2) ... Setting up libgssapi3-heimdal:arm64 (7.5.0+dfsg-2) ... Setting up python3-lib2to3 (3.7.1-1ubuntu3) ... Setting up python3-distutils (3.7.1-1ubuntu3) ... Setting up fontconfig (2.13.0-5ubuntu3) ... Regenerating fonts cache... done. Setting up gfortran (4:8.2.0-2ubuntu2) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libxext6:arm64 (2:1.3.3-1) ... Setting up libglib2.0-dev-bin (2.58.1-2) ... Setting up libxss1:arm64 (1:1.2.3-1) ... Setting up libglib2.0-dev:arm64 (2.58.1-2) ... Setting up xauth (1:1.0.10-1) ... Setting up libldap-2.4-2:arm64 (2.4.46+dfsg-5ubuntu2) ... Setting up libpango-1.0-0:arm64 (1.42.4-3) ... Setting up libcairo2:arm64 (1.16.0-1) ... Setting up libtk8.6:arm64 (8.6.8-4) ... Setting up libcurl4:arm64 (7.61.0-1ubuntu2.2) ... Setting up libpangoft2-1.0-0:arm64 (1.42.4-3) ... Setting up libpangocairo-1.0-0:arm64 (1.42.4-3) ... Setting up r-base-core (3.5.1-1build1) ... Creating config file /etc/R/Renviron with new version Setting up r-bioc-biocgenerics (0.28.0-1) ... Setting up r-bioc-s4vectors (0.20.0-1) ... Setting up libicu-dev (60.2-6ubuntu1) ... Setting up r-base-dev (3.5.1-1build1) ... Setting up libharfbuzz-dev:arm64 (1.9.0-1) ... Setting up debhelper (11.3.2ubuntu1) ... Setting up dh-r (20181101) ... Setting up dh-autoreconf (19) ... Setting up libicu-le-hb-dev:arm64 (1.0.3+git161113-5) ... Setting up dh-strip-nondeterminism (0.044-1) ... Setting up sbuild-build-depends-r-bioc-iranges-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Processing triggers for systemd (239-7ubuntu10.1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-138-generic arm64 (aarch64) Toolchain package versions: binutils_2.31.1-7ubuntu1 dpkg-dev_1.19.0.5ubuntu5 g++-8_8.2.0-9ubuntu1 gcc-8_8.2.0-9ubuntu1 libc6-dev_2.28-0ubuntu1 libstdc++-8-dev_8.2.0-9ubuntu1 libstdc++6_8.2.0-9ubuntu1 linux-libc-dev_4.18.0-11.12 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.7.0 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-8 autotools-dev_20180224.1 base-files_10.1ubuntu8 base-passwd_3.5.45 bash_4.4.18-2ubuntu3 binutils_2.31.1-7ubuntu1 binutils-aarch64-linux-gnu_2.31.1-7ubuntu1 binutils-common_2.31.1-7ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu2 build-essential_12.5ubuntu2 bzip2_1.0.6-9 ca-certificates_20180409 coreutils_8.28-1ubuntu2 cpp_4:8.2.0-2ubuntu2 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libx11-6_2:1.6.7-1 libx11-data_2:1.6.7-1 libxau6_1:1.0.8-1 libxcb-render0_1.13.1-1 libxcb-shm0_1.13.1-1 libxcb1_1.13.1-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1 libxft2_2.3.2-2 libxml2_2.9.4+dfsg1-7ubuntu2 libxmuu1_2:1.1.2-2 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.1.5-1 libzstd1_1.3.5+dfsg-1ubuntu1 linux-libc-dev_4.18.0-11.12 lockfile-progs_0.1.18 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1ubuntu1 make_4.2.1-1.2 man-db_2.8.4-3 mawk_1.3.3-17ubuntu3 mime-support_3.60ubuntu1 mount_2.32-0.1ubuntu2 multiarch-support_2.28-0ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 openssl_1.1.1-1ubuntu2 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-3 perl_5.28.0-3 perl-base_5.28.0-3 perl-modules-5.26_5.26.2-7 perl-modules-5.28_5.28.0-3 pinentry-curses_1.1.0-1build2 pkg-config_0.29.1-0ubuntu2 pkgbinarymangler_143 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 python3_3.7.1-1ubuntu1 python3-distutils_3.7.1-1ubuntu3 python3-lib2to3_3.7.1-1ubuntu3 python3-minimal_3.7.1-1ubuntu1 python3.7_3.7.1-1 python3.7-minimal_3.7.1-1 r-base-core_3.5.1-1build1 r-base-dev_3.5.1-1build1 r-bioc-biocgenerics_0.28.0-1 r-bioc-s4vectors_0.20.0-1 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-iranges-dummy_0.invalid.0 sed_4.5-2 sensible-utils_0.0.12 systemd_239-7ubuntu10.1 systemd-sysv_239-7ubuntu10.1 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu2 tar_1.30+dfsg-2 tzdata_2018g-1 ubuntu-keyring_2018.09.18.1 ucf_3.0038 unzip_6.0-21ubuntu1 util-linux_2.32-0.1ubuntu2 x11-common_1:7.7+19ubuntu8 xauth_1:1.0.10-1 xdg-utils_1.1.3-1ubuntu2 xz-utils_5.2.2-1.3 zip_3.0-11build1 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu Nov 8 07:02:00 2018 UTC gpgv: using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54 gpgv: issuer "daissi@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-bioc-iranges_2.16.0-1.dsc dpkg-source: info: extracting r-bioc-iranges in r-bioc-iranges-2.16.0 dpkg-source: info: unpacking r-bioc-iranges_2.16.0.orig.tar.gz dpkg-source: info: unpacking r-bioc-iranges_2.16.0-1.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-15634895 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-15634895 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-15634895 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package r-bioc-iranges dpkg-buildpackage: info: source version 2.16.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build r-bioc-iranges-2.16.0 dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --buildsystem R dh_testdir -O--buildsystem=R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules build-arch dh build-arch --buildsystem R dh_testdir -a -O--buildsystem=R dh_update_autotools_config -a -O--buildsystem=R dh_autoreconf -a -O--buildsystem=R dh_auto_configure -a -O--buildsystem=R dh_auto_build -a -O--buildsystem=R dh_auto_test -a -O--buildsystem=R create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --buildsystem R dh_testroot -a -O--buildsystem=R dh_prep -a -O--buildsystem=R dh_installdirs -a -O--buildsystem=R dh_auto_install -a -O--buildsystem=R I: R packages needed for DEP8: runit, xvector I: R Package: IRanges Version: 2.16.0 I: Building using R version 3.5.1-1build1 I: R API version: r-api-3.5 I: Using built-time from d/changelog: Thu, 08 Nov 2018 07:50:24 +0100 mkdir -p /<>/debian/r-bioc-iranges/usr/lib/R/site-library R CMD INSTALL -l /<>/debian/r-bioc-iranges/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 08 Nov 2018 07:50:24 +0100'" * installing *source* package ‘IRanges’ ... ** libs make[1]: Entering directory '/<>/src' gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-XlT4ot/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c CompressedAtomicList_utils.c -o CompressedAtomicList_utils.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-XlT4ot/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c CompressedIRangesList_class.c -o CompressedIRangesList_class.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-XlT4ot/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c CompressedList_class.c -o CompressedList_class.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-XlT4ot/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Grouping_class.c -o Grouping_class.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-XlT4ot/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c IPosRanges_comparison.c -o IPosRanges_comparison.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-XlT4ot/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c IRanges_class.c -o IRanges_class.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-XlT4ot/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c IRanges_constructor.c -o IRanges_constructor.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-XlT4ot/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c NCList.c -o NCList.o NCList.c: In function ‘NCListAsINTSXP_print’: NCList.c:674:23: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=] sprintf(format, "%c0%d%c", '%', max_digits, 'd'); ^~ NCList.c:674:19: note: directive argument in the range [-2147483647, 2147483647] sprintf(format, "%c0%d%c", '%', max_digits, 'd'); ^~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/share/R/include/Rinternals.h:39, from /usr/share/R/include/Rdefines.h:40, from /usr/lib/R/site-library/S4Vectors/include/S4Vectors_defines.h:18, from ../inst/include/IRanges_defines.h:18, from IRanges.h:1, from NCList.c:5: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 15 bytes into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-XlT4ot/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_IRanges.c -o R_init_IRanges.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-XlT4ot/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Ranges_class.c -o Ranges_class.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-XlT4ot/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RleViews_utils.c -o RleViews_utils.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-XlT4ot/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c S4Vectors_stubs.c -o S4Vectors_stubs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-XlT4ot/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SimpleIRangesList_class.c -o SimpleIRangesList_class.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-XlT4ot/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c coverage_methods.c -o coverage_methods.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-XlT4ot/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c extractListFragments.c -o extractListFragments.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-XlT4ot/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c inter_range_methods.c -o inter_range_methods.o gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o IRanges.so CompressedAtomicList_utils.o CompressedIRangesList_class.o CompressedList_class.o Grouping_class.o IPosRanges_comparison.o IRanges_class.o IRanges_constructor.o NCList.o R_init_IRanges.o Ranges_class.o RleViews_utils.o S4Vectors_stubs.o SimpleIRangesList_class.o coverage_methods.o extractListFragments.o inter_range_methods.o -L/usr/lib/R/lib -lR make[1]: Leaving directory '/<>/src' make[1]: Entering directory '/<>/src' make[1]: Leaving directory '/<>/src' installing to /<>/debian/r-bioc-iranges/usr/lib/R/site-library/IRanges/libs ** R ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘drop’ from package ‘base’ in package ‘IRanges’ Creating a generic function for ‘runmed’ from package ‘stats’ in package ‘IRanges’ Creating a generic function for ‘smoothEnds’ from package ‘stats’ in package ‘IRanges’ Creating a generic function for ‘chartr’ from package ‘base’ in package ‘IRanges’ Creating a generic function for ‘tolower’ from package ‘base’ in package ‘IRanges’ Creating a generic function for ‘toupper’ from package ‘base’ in package ‘IRanges’ Creating a generic function for ‘sub’ from package ‘base’ in package ‘IRanges’ Creating a generic function for ‘gsub’ from package ‘base’ in package ‘IRanges’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (IRanges) W: Ignoring specified R dependency: R (>= 3.1.0) I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.25.3) I: Using r-bioc-s4vectors for Depends:S4Vectors (>= 0.19.11) I: Using r-cran-runit for Recommends:runit I: Using r-bioc-xvector for Recommends:xvector I: Using r-bioc-genomicranges for Suggests:GenomicRanges I: Using r-bioc-rsamtools for Suggests:Rsamtools I: Using r-bioc-genomicalignments for Suggests:GenomicAlignments I: Using r-bioc-genomicfeatures for Suggests:GenomicFeatures W: Cannot find a debian package for Suggests:BSgenome.Celegans.UCSC.ce2 W: Cannot find a debian package for Suggests:pasillaBamSubset W: Cannot find a debian package for Suggests:BiocStyle dh_install -a -O--buildsystem=R dh_installdocs -a -O--buildsystem=R dh_installchangelogs -a -O--buildsystem=R dh_installexamples -a -O--buildsystem=R dh_installman -a -O--buildsystem=R dh_installcatalogs -a -O--buildsystem=R dh_installcron -a -O--buildsystem=R dh_installdebconf -a -O--buildsystem=R dh_installemacsen -a -O--buildsystem=R dh_installifupdown -a -O--buildsystem=R dh_installinfo -a -O--buildsystem=R dh_installinit -a -O--buildsystem=R dh_installsystemd -a -O--buildsystem=R dh_installmenu -a -O--buildsystem=R dh_installmime -a -O--buildsystem=R dh_installmodules -a -O--buildsystem=R dh_installlogcheck -a -O--buildsystem=R dh_installlogrotate -a -O--buildsystem=R dh_installpam -a -O--buildsystem=R dh_installppp -a -O--buildsystem=R dh_installudev -a -O--buildsystem=R dh_installgsettings -a -O--buildsystem=R dh_bugfiles -a -O--buildsystem=R dh_ucf -a -O--buildsystem=R dh_lintian -a -O--buildsystem=R dh_gconf -a -O--buildsystem=R dh_icons -a -O--buildsystem=R dh_perl -a -O--buildsystem=R dh_usrlocal -a -O--buildsystem=R dh_link -a -O--buildsystem=R dh_installwm -a -O--buildsystem=R dh_installxfonts -a -O--buildsystem=R dh_strip_nondeterminism -a -O--buildsystem=R dh_compress -a -O--buildsystem=R dh_fixperms -a -O--buildsystem=R dh_missing -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -a -O--buildsystem=R dh_gencontrol -a -O--buildsystem=R dh_md5sums -a -O--buildsystem=R dh_builddeb -a -O--buildsystem=R INFO: pkgstriptranslations version 143 INFO: pkgstriptranslations version 143 pkgstriptranslations: processing r-bioc-iranges (in debian/r-bioc-iranges); do_strip: , oemstrip: pkgstriptranslations: processing r-bioc-iranges-dbgsym (in debian/.debhelper/r-bioc-iranges/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-bioc-iranges/DEBIAN/control, package r-bioc-iranges, directory debian/r-bioc-iranges pkgstripfiles: Truncating usr/share/doc/r-bioc-iranges/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-bioc-iranges ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-bioc-iranges' in '../r-bioc-iranges_2.16.0-1_arm64.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/r-bioc-iranges/dbgsym-root/DEBIAN/control, package r-bioc-iranges-dbgsym, directory debian/.debhelper/r-bioc-iranges/dbgsym-root dpkg-deb: building package 'r-bioc-iranges-dbgsym' in 'debian/.debhelper/scratch-space/build-r-bioc-iranges/r-bioc-iranges-dbgsym_2.16.0-1_arm64.deb'. Renaming r-bioc-iranges-dbgsym_2.16.0-1_arm64.deb to r-bioc-iranges-dbgsym_2.16.0-1_arm64.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../r-bioc-iranges_2.16.0-1_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build r-bioc-iranges-2.16.0 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20181110-0133 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-bioc-iranges_2.16.0-1_arm64.changes: -------------------------------------- Format: 1.8 Date: Thu, 08 Nov 2018 07:50:24 +0100 Source: r-bioc-iranges Binary: r-bioc-iranges Architecture: arm64 Version: 2.16.0-1 Distribution: disco-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Dylan Aïssi Description: r-bioc-iranges - GNU R low-level containers for storing sets of integer ranges Changes: r-bioc-iranges (2.16.0-1) unstable; urgency=medium . * Team upload. * New upstream version * dh-update-R to update Build-Depends * Remove trailing whitespace in debian/copyright Checksums-Sha1: f523d6cfaece3dde1a7ecf58c5c8144108546d48 124076 r-bioc-iranges-dbgsym_2.16.0-1_arm64.ddeb 62a4037cdda474e740e83478714e4cdc5c15819f 9443 r-bioc-iranges_2.16.0-1_arm64.buildinfo fa176c07a3bfc11be63338cce2b83372c94b3fbc 2125860 r-bioc-iranges_2.16.0-1_arm64.deb Checksums-Sha256: ed0c9a26b91b3e6489718bf117434bd94c7a614f3572b5164c3184433ac0474a 124076 r-bioc-iranges-dbgsym_2.16.0-1_arm64.ddeb b391cdd0e2ecc3e04cfda17578936199813ef5e3b4054cdcd76c715d1d52caac 9443 r-bioc-iranges_2.16.0-1_arm64.buildinfo 7414d274400fff7b3b13c54ecb46f261813e4c2e9829a577825863348446fd16 2125860 r-bioc-iranges_2.16.0-1_arm64.deb Files: 2c6c025abcade22dd71591fe39c296b8 124076 debug optional r-bioc-iranges-dbgsym_2.16.0-1_arm64.ddeb d37eb2ea5744fc7fd61de6bcc98ae8e0 9443 gnu-r optional r-bioc-iranges_2.16.0-1_arm64.buildinfo 47327f7502cd0d67d4d640f38a5ffe2a 2125860 gnu-r optional r-bioc-iranges_2.16.0-1_arm64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-bioc-iranges_2.16.0-1_arm64.deb --------------------------------- new debian package, version 2.0. size 2125860 bytes: control archive=2560 bytes. 1075 bytes, 19 lines control 5241 bytes, 60 lines md5sums Package: r-bioc-iranges Version: 2.16.0-1 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian R Packages Maintainers Installed-Size: 3239 Depends: r-base-core (>= 3.5.1-1build1), r-api-3.5, r-bioc-biocgenerics (>= 0.25.3), r-bioc-s4vectors (>= 0.19.11), libc6 (>= 2.17) Recommends: r-cran-runit, r-bioc-xvector Suggests: r-bioc-genomicranges, r-bioc-rsamtools, r-bioc-genomicalignments, r-bioc-genomicfeatures Section: gnu-r Priority: optional Homepage: https://bioconductor.org/packages/IRanges/ Description: GNU R low-level containers for storing sets of integer ranges The IRanges class and its extensions are low-level containers for storing sets of integer ranges. A typical use of these containers in biology is for representing a set of chromosome regions. More specific extensions of the IRanges class will typically allow the storage of additional information attached to each chromosome region as well as a hierarchical relationship between these regions. drwxr-xr-x root/root 0 2018-11-08 06:50 ./ drwxr-xr-x root/root 0 2018-11-08 06:50 ./usr/ drwxr-xr-x root/root 0 2018-11-08 06:50 ./usr/lib/ drwxr-xr-x root/root 0 2018-11-08 06:50 ./usr/lib/R/ drwxr-xr-x root/root 0 2018-11-08 06:50 ./usr/lib/R/site-library/ drwxr-xr-x root/root 0 2018-11-08 06:50 ./usr/lib/R/site-library/IRanges/ -rw-r--r-- root/root 940 2018-11-08 06:50 ./usr/lib/R/site-library/IRanges/CITATION -rw-r--r-- root/root 2695 2018-11-08 06:50 ./usr/lib/R/site-library/IRanges/DESCRIPTION -rw-r--r-- root/root 2904 2018-11-08 06:50 ./usr/lib/R/site-library/IRanges/INDEX drwxr-xr-x root/root 0 2018-11-08 06:50 ./usr/lib/R/site-library/IRanges/Meta/ -rw-r--r-- root/root 7453 2018-11-08 06:50 ./usr/lib/R/site-library/IRanges/Meta/Rd.rds -rw-r--r-- root/root 113 2018-11-08 06:50 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+------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build-Space: 7712 Build-Time: 122 Distribution: disco-proposed Host Architecture: arm64 Install-Time: 50 Job: r-bioc-iranges_2.16.0-1.dsc Machine Architecture: arm64 Package: r-bioc-iranges Package-Time: 174 Source-Version: 2.16.0-1 Space: 7712 Status: successful Version: 2.16.0-1 -------------------------------------------------------------------------------- Finished at 20181110-0133 Build needed 00:02:54, 7712k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=disco --arch=arm64 PACKAGEBUILD-15634895 Scanning for processes to kill in build PACKAGEBUILD-15634895