https://launchpad.net/ubuntu/+source/r-bioc-isoformswitchanalyzer/2.0.1+ds-1/+build/26510853 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lcy02-amd64-093 5.4.0-156-generic #173-Ubuntu SMP Tue Jul 11 07:25:22 UTC 2023 x86_64 Buildd toolchain package versions: launchpad-buildd_234~642~ubuntu20.04.1 python3-lpbuildd_234~642~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 16 Aug 01:54:43 ntpdate[1924]: adjust time server 10.131.248.1 offset 0.003528 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=mantic --arch=amd64 PACKAGEBUILD-26510853 --image-type chroot /home/buildd/filecache-default/1fc1752c0976ad9eb0e621fd063fde252dab04e3 Creating target for build PACKAGEBUILD-26510853 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=mantic --arch=amd64 PACKAGEBUILD-26510853 Starting target for build PACKAGEBUILD-26510853 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=mantic --arch=amd64 PACKAGEBUILD-26510853 'deb http://ftpmaster.internal/ubuntu mantic main universe' 'deb http://ftpmaster.internal/ubuntu mantic-security main universe' 'deb http://ftpmaster.internal/ubuntu mantic-updates main universe' 'deb http://ftpmaster.internal/ubuntu mantic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-26510853 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=mantic --arch=amd64 PACKAGEBUILD-26510853 Updating target for build PACKAGEBUILD-26510853 Get:1 http://ftpmaster.internal/ubuntu mantic InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu mantic-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu mantic-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu mantic-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu mantic/main amd64 Packages [1398 kB] Get:6 http://ftpmaster.internal/ubuntu mantic/main Translation-en [512 kB] Get:7 http://ftpmaster.internal/ubuntu mantic/universe amd64 Packages [15.2 MB] Get:8 http://ftpmaster.internal/ubuntu mantic/universe Translation-en [5969 kB] Get:9 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 Packages [146 kB] Get:10 http://ftpmaster.internal/ubuntu mantic-proposed/main Translation-en [44.1 kB] Get:11 http://ftpmaster.internal/ubuntu mantic-proposed/universe amd64 Packages [633 kB] Get:12 http://ftpmaster.internal/ubuntu mantic-proposed/universe Translation-en [187 kB] Fetched 24.7 MB in 2s (10.3 MB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-12 libstdc++-12-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-13 g++-13 gcc-13 gcc-13-base libgcc-13-dev libhwasan0 libproc2-0 libsframe1 libstdc++-13-dev systemd-dev The following packages will be upgraded: adduser advancecomp apt base-files bash binutils binutils-common binutils-x86-64-linux-gnu bsdutils build-essential ca-certificates coreutils cpp cpp-12 dash debconf debianutils diffutils dpkg dpkg-dev e2fsprogs fakeroot findutils g++ g++-12 gcc gcc-12 gcc-12-base gpg gpg-agent gpgconf gpgv grep hostname init init-system-helpers libacl1 libapparmor1 libapt-pkg6.0 libargon2-1 libasan8 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libext2fs2 libfakeroot libfdisk1 libgcc-12-dev libgcc-s1 libgcrypt20 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgprofng0 libgssapi-krb5-2 libhogweed6 libidn2-0 libip4tc2 libisl23 libitm1 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 liblsan0 liblzma5 libmd0 libmount1 libmpfr6 libncurses6 libncursesw6 libnettle8 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libperl5.36 libpng16-16 libquadmath0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libsqlite3-0 libss2 libssl3 libstdc++-12-dev libstdc++6 libsystemd-shared libsystemd0 libtasn1-6 libtinfo6 libtsan2 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev logsave lsb-base lto-disabled-list mawk mount ncurses-base ncurses-bin openssl perl perl-base perl-modules-5.36 pkgbinarymangler procps readline-common sed sensible-utils systemd systemd-sysv sysvinit-utils tar tzdata usrmerge util-linux util-linux-extra xz-utils zlib1g 150 upgraded, 10 newly installed, 0 to remove and 0 not upgraded. Need to get 163 MB of archives. After this operation, 172 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu mantic/main amd64 libcrypt-dev amd64 1:4.4.36-2 [112 kB] Get:2 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 libc6-dev amd64 2.38-1ubuntu3 [2115 kB] Get:3 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 libc-dev-bin amd64 2.38-1ubuntu3 [20.3 kB] Get:4 http://ftpmaster.internal/ubuntu mantic/main amd64 libcrypt1 amd64 1:4.4.36-2 [82.2 kB] Get:5 http://ftpmaster.internal/ubuntu mantic/main amd64 linux-libc-dev amd64 6.3.0-7.7 [1544 kB] Get:6 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 libc6 amd64 2.38-1ubuntu3 [3246 kB] Get:7 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 libc-bin amd64 2.38-1ubuntu3 [682 kB] Get:8 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 gcc-13-base amd64 13.2.0-2ubuntu1 [42.9 kB] Get:9 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 libgcc-s1 amd64 13.2.0-2ubuntu1 [62.4 kB] Get:10 http://ftpmaster.internal/ubuntu mantic/main amd64 base-files amd64 13ubuntu1 [74.0 kB] Get:11 http://ftpmaster.internal/ubuntu mantic/main amd64 debianutils amd64 5.8-1 [103 kB] Get:12 http://ftpmaster.internal/ubuntu mantic/main amd64 bash amd64 5.2.15-2ubuntu1 [795 kB] Get:13 http://ftpmaster.internal/ubuntu mantic/main amd64 bsdutils amd64 1:2.38.1-5ubuntu2 [91.5 kB] Get:14 http://ftpmaster.internal/ubuntu mantic/main amd64 coreutils amd64 9.1-1ubuntu2 [1407 kB] Get:15 http://ftpmaster.internal/ubuntu mantic/main amd64 liblzma5 amd64 5.4.1-0.2 [125 kB] Get:16 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 libstdc++6 amd64 13.2.0-2ubuntu1 [771 kB] Get:17 http://ftpmaster.internal/ubuntu mantic/main amd64 libzstd1 amd64 1.5.5+dfsg2-1ubuntu2 [295 kB] Get:18 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 libgpg-error0 amd64 1.47-2 [69.7 kB] Get:19 http://ftpmaster.internal/ubuntu mantic/main amd64 libgcrypt20 amd64 1.10.2-2ubuntu1 [531 kB] Get:20 http://ftpmaster.internal/ubuntu mantic/main amd64 libacl1 amd64 2.3.1-3 [16.4 kB] Get:21 http://ftpmaster.internal/ubuntu mantic/main amd64 libapparmor1 amd64 3.0.8-1ubuntu4 [46.2 kB] Get:22 http://ftpmaster.internal/ubuntu mantic/main amd64 libaudit-common all 1:3.1.1-1 [5426 B] Get:23 http://ftpmaster.internal/ubuntu mantic/main amd64 libcap-ng0 amd64 0.8.3-1build2 [15.3 kB] Get:24 http://ftpmaster.internal/ubuntu mantic/main amd64 libaudit1 amd64 1:3.1.1-1 [46.1 kB] Get:25 http://ftpmaster.internal/ubuntu mantic/main amd64 libblkid1 amd64 2.38.1-5ubuntu2 [111 kB] Get:26 http://ftpmaster.internal/ubuntu mantic/main amd64 libcap2 amd64 1:2.66-4ubuntu1 [29.4 kB] Get:27 http://ftpmaster.internal/ubuntu mantic/main amd64 libip4tc2 amd64 1.8.9-2ubuntu2 [22.2 kB] Get:28 http://ftpmaster.internal/ubuntu mantic/main amd64 libperl5.36 amd64 5.36.0-7ubuntu1 [4834 kB] Get:29 http://ftpmaster.internal/ubuntu mantic/main amd64 perl amd64 5.36.0-7ubuntu1 [235 kB] Get:30 http://ftpmaster.internal/ubuntu mantic/main amd64 perl-base amd64 5.36.0-7ubuntu1 [1784 kB] Get:31 http://ftpmaster.internal/ubuntu mantic/main amd64 perl-modules-5.36 all 5.36.0-7ubuntu1 [2984 kB] Get:32 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 libdb5.3 amd64 5.3.28+dfsg2-2 [736 kB] Get:33 http://ftpmaster.internal/ubuntu mantic/main amd64 zlib1g amd64 1:1.2.13.dfsg-1ubuntu5 [62.7 kB] Get:34 http://ftpmaster.internal/ubuntu mantic/main amd64 debconf all 1.5.82 [125 kB] Get:35 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 libssl3 amd64 3.0.10-1ubuntu2 [1929 kB] Get:36 http://ftpmaster.internal/ubuntu mantic/main amd64 libkmod2 amd64 30+20230519-1ubuntu2 [51.1 kB] Get:37 http://ftpmaster.internal/ubuntu mantic/main amd64 libpcre2-8-0 amd64 10.42-2 [229 kB] Get:38 http://ftpmaster.internal/ubuntu mantic/main amd64 libselinux1 amd64 3.5-1 [78.2 kB] Get:39 http://ftpmaster.internal/ubuntu mantic/main amd64 libmount1 amd64 2.38.1-5ubuntu2 [121 kB] Get:40 http://ftpmaster.internal/ubuntu mantic/main amd64 libpam0g amd64 1.5.2-6ubuntu1 [65.9 kB] Get:41 http://ftpmaster.internal/ubuntu mantic/main amd64 libseccomp2 amd64 2.5.4-1ubuntu3 [49.1 kB] Get:42 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 systemd-sysv amd64 253.5-1ubuntu2 [11.5 kB] Get:43 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 systemd amd64 253.5-1ubuntu2 [3071 kB] Get:44 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 libsystemd-shared amd64 253.5-1ubuntu2 [1871 kB] Get:45 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 systemd-dev all 253.5-1ubuntu2 [79.0 kB] Get:46 http://ftpmaster.internal/ubuntu mantic/main amd64 libargon2-1 amd64 0~20190702+dfsg-3 [20.3 kB] Get:47 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 libudev1 amd64 253.5-1ubuntu2 [159 kB] Get:48 http://ftpmaster.internal/ubuntu mantic/main amd64 libdevmapper1.02.1 amd64 2:1.02.185-2ubuntu1 [139 kB] Get:49 http://ftpmaster.internal/ubuntu mantic/main amd64 libuuid1 amd64 2.38.1-5ubuntu2 [32.7 kB] Get:50 http://ftpmaster.internal/ubuntu mantic/main amd64 libcryptsetup12 amd64 2:2.6.1-4ubuntu1 [243 kB] Get:51 http://ftpmaster.internal/ubuntu mantic/main amd64 libfdisk1 amd64 2.38.1-5ubuntu2 [144 kB] Get:52 http://ftpmaster.internal/ubuntu mantic/main amd64 libp11-kit0 amd64 0.24.1-2ubuntu1 [248 kB] Get:53 http://ftpmaster.internal/ubuntu mantic/main amd64 mount amd64 2.38.1-5ubuntu2 [114 kB] Get:54 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 libsystemd0 amd64 253.5-1ubuntu2 [407 kB] Get:55 http://ftpmaster.internal/ubuntu mantic/main amd64 libapt-pkg6.0 amd64 2.7.3 [949 kB] Get:56 http://ftpmaster.internal/ubuntu mantic/main amd64 tar amd64 1.34+dfsg-1.2ubuntu1 [293 kB] Get:57 http://ftpmaster.internal/ubuntu mantic/main amd64 dpkg amd64 1.21.22ubuntu1 [1393 kB] Get:58 http://ftpmaster.internal/ubuntu mantic/main amd64 dash amd64 0.5.12-6ubuntu1 [90.0 kB] Get:59 http://ftpmaster.internal/ubuntu mantic/main amd64 diffutils amd64 1:3.8-4 [176 kB] Get:60 http://ftpmaster.internal/ubuntu mantic/main amd64 findutils amd64 4.9.0-5 [299 kB] Get:61 http://ftpmaster.internal/ubuntu mantic/main amd64 grep amd64 3.11-2 [161 kB] Get:62 http://ftpmaster.internal/ubuntu mantic/main amd64 hostname amd64 3.23+nmu1ubuntu1 [11.0 kB] Get:63 http://ftpmaster.internal/ubuntu mantic/main amd64 libncurses6 amd64 6.4+20230625-2 [112 kB] Get:64 http://ftpmaster.internal/ubuntu mantic/main amd64 libncursesw6 amd64 6.4+20230625-2 [149 kB] Get:65 http://ftpmaster.internal/ubuntu mantic/main amd64 libtinfo6 amd64 6.4+20230625-2 [108 kB] Get:66 http://ftpmaster.internal/ubuntu mantic/main amd64 ncurses-bin amd64 6.4+20230625-2 [185 kB] Get:67 http://ftpmaster.internal/ubuntu mantic/main amd64 sed amd64 4.9-1 [193 kB] Get:68 http://ftpmaster.internal/ubuntu mantic/main amd64 libsmartcols1 amd64 2.38.1-5ubuntu2 [59.5 kB] Get:69 http://ftpmaster.internal/ubuntu mantic/main amd64 util-linux-extra amd64 2.38.1-5ubuntu2 [83.8 kB] Get:70 http://ftpmaster.internal/ubuntu mantic/main amd64 util-linux amd64 2.38.1-5ubuntu2 [1075 kB] Get:71 http://ftpmaster.internal/ubuntu mantic/main amd64 init-system-helpers all 1.65.2ubuntu1 [38.7 kB] Get:72 http://ftpmaster.internal/ubuntu mantic/main amd64 ncurses-base all 6.4+20230625-2 [24.5 kB] Get:73 http://ftpmaster.internal/ubuntu mantic/main amd64 sysvinit-utils amd64 3.07-1ubuntu1 [33.2 kB] Get:74 http://ftpmaster.internal/ubuntu mantic/main amd64 lsb-base all 11.6 [4606 B] Get:75 http://ftpmaster.internal/ubuntu mantic/main amd64 adduser all 3.137ubuntu1 [101 kB] Get:76 http://ftpmaster.internal/ubuntu mantic/main amd64 gpgv amd64 2.2.40-1.1ubuntu1 [140 kB] Get:77 http://ftpmaster.internal/ubuntu mantic/main amd64 libgmp10 amd64 2:6.3.0+dfsg-2ubuntu3 [255 kB] Get:78 http://ftpmaster.internal/ubuntu mantic/main amd64 libnettle8 amd64 3.9.1-2 [182 kB] Get:79 http://ftpmaster.internal/ubuntu mantic/main amd64 libhogweed6 amd64 3.9.1-2 [199 kB] Get:80 http://ftpmaster.internal/ubuntu mantic/main amd64 libidn2-0 amd64 2.3.4-1 [108 kB] Get:81 http://ftpmaster.internal/ubuntu mantic/main amd64 libtasn1-6 amd64 4.19.0-3 [44.5 kB] Get:82 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 libgnutls30 amd64 3.8.1-3ubuntu1 [991 kB] Get:83 http://ftpmaster.internal/ubuntu mantic/main amd64 apt amd64 2.7.3 [1375 kB] Get:84 http://ftpmaster.internal/ubuntu mantic/main amd64 libpam-modules-bin amd64 1.5.2-6ubuntu1 [47.3 kB] Get:85 http://ftpmaster.internal/ubuntu mantic/main amd64 libpam-modules amd64 1.5.2-6ubuntu1 [284 kB] Get:86 http://ftpmaster.internal/ubuntu mantic/main amd64 logsave amd64 1.47.0-2ubuntu1 [22.0 kB] Get:87 http://ftpmaster.internal/ubuntu mantic/main amd64 libext2fs2 amd64 1.47.0-2ubuntu1 [219 kB] Get:88 http://ftpmaster.internal/ubuntu mantic/main amd64 e2fsprogs amd64 1.47.0-2ubuntu1 [597 kB] Get:89 http://ftpmaster.internal/ubuntu mantic/main amd64 init amd64 1.65.2ubuntu1 [5508 B] Get:90 http://ftpmaster.internal/ubuntu mantic/main amd64 libattr1 amd64 1:2.5.1-4 [12.4 kB] Get:91 http://ftpmaster.internal/ubuntu mantic/main amd64 libdebconfclient0 amd64 0.270ubuntu1 [11.1 kB] Get:92 http://ftpmaster.internal/ubuntu mantic/main amd64 libmd0 amd64 1.1.0-1 [26.9 kB] Get:93 http://ftpmaster.internal/ubuntu mantic/main amd64 libpam-runtime all 1.5.2-6ubuntu1 [41.5 kB] Get:94 http://ftpmaster.internal/ubuntu mantic/main amd64 libsemanage-common all 3.5-1 [9890 B] Get:95 http://ftpmaster.internal/ubuntu mantic/main amd64 libsepol2 amd64 3.5-1 [301 kB] Get:96 http://ftpmaster.internal/ubuntu mantic/main amd64 libsemanage2 amd64 3.5-1 [93.3 kB] Get:97 http://ftpmaster.internal/ubuntu mantic/main amd64 usrmerge all 35ubuntu1 [58.2 kB] Get:98 http://ftpmaster.internal/ubuntu mantic/main amd64 libcom-err2 amd64 1.47.0-2ubuntu1 [22.2 kB] Get:99 http://ftpmaster.internal/ubuntu mantic/main amd64 libproc2-0 amd64 2:4.0.3-1ubuntu1 [55.9 kB] Get:100 http://ftpmaster.internal/ubuntu mantic/main amd64 libss2 amd64 1.47.0-2ubuntu1 [16.7 kB] Get:101 http://ftpmaster.internal/ubuntu mantic/main amd64 mawk amd64 1.3.4.20230730-1 [125 kB] Get:102 http://ftpmaster.internal/ubuntu mantic/main amd64 procps amd64 2:4.0.3-1ubuntu1 [609 kB] Get:103 http://ftpmaster.internal/ubuntu mantic/main amd64 sensible-utils all 0.0.20 [19.6 kB] Get:104 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 openssl amd64 3.0.10-1ubuntu2 [1187 kB] Get:105 http://ftpmaster.internal/ubuntu mantic/main amd64 ca-certificates all 20230311ubuntu1 [152 kB] Get:106 http://ftpmaster.internal/ubuntu mantic/main amd64 libgssapi-krb5-2 amd64 1.20.1-2 [142 kB] Get:107 http://ftpmaster.internal/ubuntu mantic/main amd64 libkrb5-3 amd64 1.20.1-2 [346 kB] Get:108 http://ftpmaster.internal/ubuntu mantic/main amd64 libkrb5support0 amd64 1.20.1-2 [32.7 kB] Get:109 http://ftpmaster.internal/ubuntu mantic/main amd64 libk5crypto3 amd64 1.20.1-2 [81.1 kB] Get:110 http://ftpmaster.internal/ubuntu mantic/main amd64 readline-common all 8.2-1.3 [55.7 kB] Get:111 http://ftpmaster.internal/ubuntu mantic/main amd64 libreadline8 amd64 8.2-1.3 [151 kB] Get:112 http://ftpmaster.internal/ubuntu mantic/main amd64 libsqlite3-0 amd64 3.42.0-1 [668 kB] Get:113 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 tzdata all 2023c-9ubuntu1 [270 kB] Get:114 http://ftpmaster.internal/ubuntu mantic/main amd64 libpng16-16 amd64 1.6.40-1 [186 kB] Get:115 http://ftpmaster.internal/ubuntu mantic/main amd64 xz-utils amd64 5.4.1-0.2 [270 kB] Get:116 http://ftpmaster.internal/ubuntu mantic/main amd64 advancecomp amd64 2.5-1 [180 kB] Get:117 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 libgprofng0 amd64 2.41-4ubuntu1 [847 kB] Get:118 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 libctf0 amd64 2.41-4ubuntu1 [94.1 kB] Get:119 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 libctf-nobfd0 amd64 2.41-4ubuntu1 [96.4 kB] Get:120 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 binutils-x86-64-linux-gnu amd64 2.41-4ubuntu1 [2469 kB] Get:121 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 libbinutils amd64 2.41-4ubuntu1 [561 kB] Get:122 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 binutils amd64 2.41-4ubuntu1 [18.0 kB] Get:123 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 binutils-common amd64 2.41-4ubuntu1 [248 kB] Get:124 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 libsframe1 amd64 2.41-4ubuntu1 [14.6 kB] Get:125 http://ftpmaster.internal/ubuntu mantic/main amd64 libisl23 amd64 0.26-3 [741 kB] Get:126 http://ftpmaster.internal/ubuntu mantic/main amd64 libmpfr6 amd64 4.2.0-1 [352 kB] Get:127 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 cpp-13 amd64 13.2.0-2ubuntu1 [10.7 MB] Get:128 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 g++ amd64 4:13.2.0-1ubuntu1 [1122 B] Get:129 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 gcc amd64 4:13.2.0-1ubuntu1 [5168 B] Get:130 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 cpp amd64 4:13.2.0-1ubuntu1 [28.9 kB] Get:131 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 libcc1-0 amd64 13.2.0-2ubuntu1 [48.1 kB] Get:132 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 libgomp1 amd64 13.2.0-2ubuntu1 [142 kB] Get:133 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 libitm1 amd64 13.2.0-2ubuntu1 [29.3 kB] Get:134 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 libatomic1 amd64 13.2.0-2ubuntu1 [10.4 kB] Get:135 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 libasan8 amd64 13.2.0-2ubuntu1 [2835 kB] Get:136 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 liblsan0 amd64 13.2.0-2ubuntu1 [1203 kB] Get:137 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 libubsan1 amd64 13.2.0-2ubuntu1 [1105 kB] Get:138 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 libquadmath0 amd64 13.2.0-2ubuntu1 [153 kB] Get:139 http://ftpmaster.internal/ubuntu mantic-proposed/universe amd64 g++-12 amd64 12.3.0-7ubuntu2 [12.1 MB] Get:140 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 gcc-12 amd64 12.3.0-7ubuntu2 [21.6 MB] Get:141 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 cpp-12 amd64 12.3.0-7ubuntu2 [10.7 MB] Get:142 http://ftpmaster.internal/ubuntu mantic-proposed/universe amd64 libstdc++-12-dev amd64 12.3.0-7ubuntu2 [2180 kB] Get:143 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 libgcc-12-dev amd64 12.3.0-7ubuntu2 [2574 kB] Get:144 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 libtsan2 amd64 13.2.0-2ubuntu1 [2606 kB] Get:145 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 gcc-12-base amd64 12.3.0-7ubuntu2 [43.2 kB] Get:146 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 libhwasan0 amd64 13.2.0-2ubuntu1 [1262 kB] Get:147 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 libgcc-13-dev amd64 13.2.0-2ubuntu1 [2686 kB] Get:148 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 gcc-13 amd64 13.2.0-2ubuntu1 [21.5 MB] Get:149 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 libstdc++-13-dev amd64 13.2.0-2ubuntu1 [2348 kB] Get:150 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 g++-13 amd64 13.2.0-2ubuntu1 [12.1 MB] Get:151 http://ftpmaster.internal/ubuntu mantic/main amd64 dpkg-dev all 1.21.22ubuntu1 [1118 kB] Get:152 http://ftpmaster.internal/ubuntu mantic/main amd64 libdpkg-perl all 1.21.22ubuntu1 [247 kB] Get:153 http://ftpmaster.internal/ubuntu mantic/main amd64 lto-disabled-list all 42 [12.4 kB] Get:154 http://ftpmaster.internal/ubuntu mantic/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] Get:155 http://ftpmaster.internal/ubuntu mantic/main amd64 libfakeroot amd64 1.32.1-1 [31.9 kB] Get:156 http://ftpmaster.internal/ubuntu mantic/main amd64 fakeroot amd64 1.32.1-1 [60.1 kB] Get:157 http://ftpmaster.internal/ubuntu mantic/main amd64 gpg amd64 2.2.40-1.1ubuntu1 [523 kB] Get:158 http://ftpmaster.internal/ubuntu mantic/main amd64 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Setting up e2fsprogs (1.47.0-2ubuntu1) ... Setting up ca-certificates (20230311ubuntu1) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 19 added, 6 removed; done. Setting up perl (5.36.0-7ubuntu1) ... Setting up libgprofng0:amd64 (2.41-4ubuntu1) ... Setting up libgcc-12-dev:amd64 (12.3.0-7ubuntu2) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-2) ... Setting up libdpkg-perl (1.21.22ubuntu1) ... Setting up libgcc-13-dev:amd64 (13.2.0-2ubuntu1) ... Setting up cpp (4:13.2.0-1ubuntu1) ... Setting up gpgconf (2.2.40-1.1ubuntu1) ... Setting up libc6-dev:amd64 (2.38-1ubuntu3) ... Setting up gpg (2.2.40-1.1ubuntu1) ... Setting up libstdc++-13-dev:amd64 (13.2.0-2ubuntu1) ... Setting up binutils-x86-64-linux-gnu (2.41-4ubuntu1) ... Setting up gpg-agent (2.2.40-1.1ubuntu1) ... Setting up libstdc++-12-dev:amd64 (12.3.0-7ubuntu2) ... Setting up binutils (2.41-4ubuntu1) ... Setting up dpkg-dev (1.21.22ubuntu1) ... Setting up gcc-12 (12.3.0-7ubuntu2) ... Setting up gcc-13 (13.2.0-2ubuntu1) ... Setting up g++-12 (12.3.0-7ubuntu2) ... Setting up g++-13 (13.2.0-2ubuntu1) ... Setting up gcc (4:13.2.0-1ubuntu1) ... Setting up g++ (4:13.2.0-1ubuntu1) ... Setting up build-essential (12.10ubuntu1) ... Processing triggers for libc-bin (2.38-1ubuntu3) ... Processing triggers for debianutils (5.8-1) ... Processing triggers for ca-certificates (20230311ubuntu1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-26510853 amd64 mantic-proposed -c chroot:build-PACKAGEBUILD-26510853 --arch=amd64 --dist=mantic-proposed --nolog -A r-bioc-isoformswitchanalyzer_2.0.1+ds-1.dsc Initiating build PACKAGEBUILD-26510853 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-156-generic #173-Ubuntu SMP Tue Jul 11 07:25:22 UTC 2023 x86_64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on lcy02-amd64-093.buildd +=================================================================================+ | r-bioc-isoformswitchanalyzer 2.0.1+ds-1 (amd64) Wed, 16 Aug 2023 01:55:08 +0000 | +=================================================================================+ Package: r-bioc-isoformswitchanalyzer Version: 2.0.1+ds-1 Source Version: 2.0.1+ds-1 Distribution: mantic-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-26510853/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-isoformswitchanalyzer-nVkNWI/resolver-QbZA6n' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-bioc-isoformswitchanalyzer_2.0.1+ds-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/r-bioc-isoformswitchanalyzer-nVkNWI/r-bioc-isoformswitchanalyzer-2.0.1+ds' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-isoformswitchanalyzer-nVkNWI' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-limma, r-bioc-dexseq, r-bioc-saturn, r-bioc-sva, r-cran-ggplot2 (>= 3.3.5), r-bioc-pfamanalyzer, r-bioc-bsgenome, r-cran-plyr, r-cran-reshape2, r-cran-gridextra, r-bioc-biostrings, r-bioc-iranges, r-bioc-genomicranges, r-cran-rcolorbrewer, r-bioc-rtracklayer, r-cran-venndiagram, r-cran-dbi, r-bioc-genomeinfodb, r-bioc-tximport, r-bioc-tximeta, r-bioc-edger, r-cran-futile.logger, r-cran-stringr, r-cran-dplyr, r-cran-magrittr, r-cran-readr, r-cran-tibble, r-bioc-xvector, r-bioc-biocgenerics, r-cran-rcurl, r-bioc-biobase, r-bioc-summarizedexperiment, r-cran-tidyr, r-bioc-s4vectors, r-bioc-biocparallel, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-limma, r-bioc-dexseq, r-bioc-saturn, r-bioc-sva, r-cran-ggplot2 (>= 3.3.5), r-bioc-pfamanalyzer, r-bioc-bsgenome, r-cran-plyr, r-cran-reshape2, r-cran-gridextra, r-bioc-biostrings, r-bioc-iranges, r-bioc-genomicranges, r-cran-rcolorbrewer, r-bioc-rtracklayer, r-cran-venndiagram, r-cran-dbi, r-bioc-genomeinfodb, r-bioc-tximport, r-bioc-tximeta, r-bioc-edger, r-cran-futile.logger, r-cran-stringr, r-cran-dplyr, r-cran-magrittr, r-cran-readr, r-cran-tibble, r-bioc-xvector, r-bioc-biocgenerics, r-cran-rcurl, r-bioc-biobase, r-bioc-summarizedexperiment, r-cran-tidyr, r-bioc-s4vectors, r-bioc-biocparallel, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [613 B] Get:5 copy:/<>/apt_archive ./ Packages [696 B] Fetched 2272 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-12 libstdc++-12-dev Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils dctrl-tools debhelper debugedit dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax fonts-noto-core gettext gettext-base gfortran gfortran-13 groff-base icu-devtools intltool-debian javascript-common libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libboost1.81-dev libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libclone-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdw1 libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-13-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu72 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 libldap2 liblerc4 liblua5.3-0 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpsl5 libreadline-dev librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff6 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libuv1 libvariable-magic-perl libwebp7 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 libyaml-0-2 littler m4 man-db node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data pkg-config pkgconf pkgconf-bin po-debconf r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-annotationhub r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biocversion r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray r-bioc-deseq2 r-bioc-dexseq r-bioc-edger r-bioc-ensembldb r-bioc-genefilter r-bioc-geneplotter r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-interactivedisplaybase r-bioc-iranges r-bioc-keggrest r-bioc-limma r-bioc-matrixgenerics r-bioc-pfamanalyzer r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-saturn r-bioc-summarizedexperiment r-bioc-sva r-bioc-tximeta r-bioc-tximport r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-boot r-cran-bslib r-cran-cachem r-cran-cli r-cran-clipr r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-hwriter r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-locfdr r-cran-locfit r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pbapply r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-plyr r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-rcurl r-cran-readr r-cran-reshape2 r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-sass r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-statmod r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-venndiagram r-cran-viridislite r-cran-vroom r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc debtags dh-make postgresql-client-common gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-13-multilib gfortran-13-doc libcoarrays-dev groff apache2 | lighttpd | httpd liblapack-doc libboost1.81-doc libboost-atomic1.81-dev libboost-chrono1.81-dev libboost-container1.81-dev libboost-context1.81-dev libboost-contract1.81-dev libboost-coroutine1.81-dev libboost-date-time1.81-dev libboost-exception1.81-dev libboost-fiber1.81-dev libboost-filesystem1.81-dev libboost-graph1.81-dev libboost-graph-parallel1.81-dev libboost-iostreams1.81-dev libboost-locale1.81-dev libboost-log1.81-dev libboost-math1.81-dev libboost-mpi1.81-dev libboost-mpi-python1.81-dev libboost-numpy1.81-dev libboost-program-options1.81-dev libboost-python1.81-dev libboost-random1.81-dev libboost-regex1.81-dev libboost-serialization1.81-dev libboost-stacktrace1.81-dev libboost-system1.81-dev libboost-test1.81-dev libboost-thread1.81-dev libboost-timer1.81-dev libboost-type-erasure1.81-dev libboost-wave1.81-dev libboost1.81-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.81-dev low-memory-monitor libio-compress-brotli-perl icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix libjs-mathjax-doc liblzma-doc ncurses-doc libscalar-number-perl readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk libbusiness-isbn-perl libregexp-ipv6-perl libwww-perl libcurl4-gnutls-dev m4-doc apparmor less www-browser nodejs texlive-latex-recommended texlive-xetex texlive-luatex pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin ghc php python ruby libjs-katex citation-style-language-styles libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo r-bioc-go.db r-bioc-org.hs.eg.db r-cran-runit r-bioc-graph r-bioc-biocstyle r-cran-testthat r-bioc-variantannotation r-bioc-experimenthub r-bioc-all r-bioc-affy r-cran-foreach r-cran-bbmisc r-cran-doparallel r-bioc-shortread r-cran-batchtools r-cran-data.table r-cran-mockery r-cran-webmockr r-bioc-hdf5array r-cran-lobstr r-bioc-delayedmatrixstats r-cran-pheatmap r-bioc-tximportdata r-bioc-glmgampoi r-cran-roxygen2 r-bioc-rhdf5 r-cran-seuratobject r-bioc-ggbio r-bioc-gviz r-cran-markdown r-cran-biasedurn r-cran-ellipse r-cran-gplots r-bioc-sparsematrixstats r-cran-covr r-bioc-bladderbatch r-bioc-fishpond r-cran-devtools r-cran-ff r-cran-callr r-cran-processx r-cran-ps r-cran-rprojroot r-cran-rstudioapi r-cran-whoami r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-jpeg r-cran-viridis r-cran-spelling r-cran-rmysql r-cran-future r-cran-testit r-cran-unitizer r-cran-profvis r-cran-rgeos r-cran-forcats r-cran-r.utils r-cran-waldo r-cran-lubridate r-cran-cairo r-cran-ragg r-cran-magick r-cran-sf r-cran-r.rsp r-cran-lintr r-cran-tidyverse r-cran-getopt r-cran-interp r-cran-gam r-cran-r.devices r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-units r-cran-vdiffr r-cran-iterators r-cran-itertools r-cran-inline r-cran-usethis r-cran-gert r-cran-gh r-cran-rvest r-cran-dichromat r-cran-rmpi r-cran-rlecuyer r-cran-bench r-cran-brio r-cran-here r-cran-pkgbuild r-cran-pkgload r-cran-pkgdown r-cran-zeallot r-cran-remotes r-cran-plm r-cran-zoo Recommended packages: devscripts cme git-buildpackage curl | wget | lynx bzip2-doc libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs node-jquery libldap-common libdevel-partialdump-perl libpng-tools publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl r-recommended r-doc-html r-bioc-biovizbase r-cran-class r-cran-testthat r-cran-remotes r-cran-thematic r-cran-mockery r-cran-bench r-cran-brio r-cran-callr r-cran-covr r-cran-decor r-cran-desc r-cran-lobstr r-cran-webutils r-cran-rpostgresql r-cran-broom r-cran-rmysql r-cran-rsvg r-cran-testit r-cran-spelling r-cran-pkgload r-cran-ragg r-cran-hexbin r-cran-hmisc r-cran-interp r-cran-mapproj r-cran-maps r-cran-maptools r-cran-multcomp r-cran-quantreg r-cran-rpart r-cran-sf r-cran-svglite r-cran-vdiffr r-cran-markdown r-cran-sp r-cran-gridsvg r-cran-jpeg r-cran-magick r-cran-reticulate r-cran-rgl r-cran-tikzdevice r-cran-webshot r-cran-rstudioapi node-highlight.js r-cran-runit r-cran-sodium r-cran-future r-cran-future.apply r-cran-lubridate r-cran-domc r-cran-dygraphs r-cran-rsconnect r-cran-downlit r-cran-dbitest r-cran-cairo r-cran-data.table r-cran-mockr r-cran-formattable r-cran-waldo libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils dctrl-tools debhelper debugedit dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax fonts-noto-core gettext gettext-base gfortran gfortran-13 groff-base icu-devtools intltool-debian javascript-common libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libboost1.81-dev libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libclone-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdw1 libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-13-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu72 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 libldap2 liblerc4 liblua5.3-0 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpsl5 libreadline-dev librtmp1 libsasl2-2 libsasl2-modules-db libsm6 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff6 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libuv1 libvariable-magic-perl libwebp7 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 libyaml-0-2 littler m4 man-db node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data pkg-config pkgconf pkgconf-bin po-debconf r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-annotationhub r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biocversion r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray r-bioc-deseq2 r-bioc-dexseq r-bioc-edger r-bioc-ensembldb r-bioc-genefilter r-bioc-geneplotter r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-interactivedisplaybase r-bioc-iranges r-bioc-keggrest r-bioc-limma r-bioc-matrixgenerics r-bioc-pfamanalyzer r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-saturn 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r-cran-locfit r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pbapply r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-plyr r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-rcurl r-cran-readr r-cran-reshape2 r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-sass r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-statmod r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-venndiagram r-cran-viridislite r-cran-vroom r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml sbuild-build-depends-main-dummy ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 366 newly installed, 0 to 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http://ftpmaster.internal/ubuntu mantic/main amd64 liburi-perl all 5.19-2 [81.0 kB] Get:134 http://ftpmaster.internal/ubuntu mantic/main amd64 libhttp-message-perl all 6.44-2ubuntu1 [78.0 kB] Get:135 http://ftpmaster.internal/ubuntu mantic/main amd64 libparams-util-perl amd64 1.102-2 [21.5 kB] Get:136 http://ftpmaster.internal/ubuntu mantic/main amd64 libsub-install-perl all 0.929-1 [9764 B] Get:137 http://ftpmaster.internal/ubuntu mantic/main amd64 libdata-optlist-perl all 0.114-1 [9708 B] Get:138 http://ftpmaster.internal/ubuntu mantic/main amd64 libb-hooks-op-check-perl amd64 0.22-2build1 [9600 B] Get:139 http://ftpmaster.internal/ubuntu mantic/main amd64 libdynaloader-functions-perl all 0.003-3 [12.1 kB] Get:140 http://ftpmaster.internal/ubuntu mantic/main amd64 libdevel-callchecker-perl amd64 0.008-2 [13.9 kB] Get:141 http://ftpmaster.internal/ubuntu mantic/main amd64 libparams-classify-perl amd64 0.015-2build2 [20.7 kB] Get:142 http://ftpmaster.internal/ubuntu mantic/main amd64 libmodule-runtime-perl all 0.016-2 [16.4 kB] Get:143 http://ftpmaster.internal/ubuntu mantic/main amd64 libtry-tiny-perl all 0.31-2 [20.8 kB] Get:144 http://ftpmaster.internal/ubuntu mantic/main amd64 libmodule-implementation-perl all 0.09-2 [12.0 kB] Get:145 http://ftpmaster.internal/ubuntu mantic/main amd64 libpackage-stash-perl all 0.40-1 [19.5 kB] Get:146 http://ftpmaster.internal/ubuntu mantic/universe amd64 libclass-load-perl all 0.25-2 [12.7 kB] Get:147 http://ftpmaster.internal/ubuntu mantic/universe amd64 libclass-load-xs-perl amd64 0.10-2build1 [13.5 kB] Get:148 http://ftpmaster.internal/ubuntu mantic/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [6718 B] Get:149 http://ftpmaster.internal/ubuntu mantic/universe amd64 libdevel-globaldestruction-perl all 0.14-4 [6114 B] Get:150 http://ftpmaster.internal/ubuntu mantic/universe amd64 libalgorithm-c3-perl all 0.11-2 [10.2 kB] Get:151 http://ftpmaster.internal/ubuntu mantic/universe amd64 libclass-c3-perl all 0.35-2 [18.4 kB] Get:152 http://ftpmaster.internal/ubuntu mantic/universe amd64 libmro-compat-perl all 0.15-2 [10.1 kB] Get:153 http://ftpmaster.internal/ubuntu mantic/universe amd64 libdevel-overloadinfo-perl all 0.007-1 [7422 B] Get:154 http://ftpmaster.internal/ubuntu mantic/main amd64 libdevel-stacktrace-perl all 2.0400-2 [22.2 kB] Get:155 http://ftpmaster.internal/ubuntu mantic/main amd64 libsub-exporter-perl all 0.990-1 [49.0 kB] Get:156 http://ftpmaster.internal/ubuntu mantic/universe amd64 libeval-closure-perl all 0.14-3 [10.1 kB] Get:157 http://ftpmaster.internal/ubuntu mantic/universe amd64 libdist-checkconflicts-perl all 0.11-2 [9942 B] Get:158 http://ftpmaster.internal/ubuntu mantic/universe amd64 libmodule-runtime-conflicts-perl all 0.003-2 [6956 B] Get:159 http://ftpmaster.internal/ubuntu mantic/universe amd64 libpackage-deprecationmanager-perl all 0.18-1 [16.7 kB] Get:160 http://ftpmaster.internal/ubuntu mantic/main amd64 libpackage-stash-xs-perl amd64 0.30-1build1 [19.0 kB] Get:161 http://ftpmaster.internal/ubuntu mantic/universe amd64 libmoose-perl amd64 2.2206-1 [749 kB] Get:162 http://ftpmaster.internal/ubuntu mantic/main amd64 libvariable-magic-perl amd64 0.63-1 [35.0 kB] Get:163 http://ftpmaster.internal/ubuntu mantic/main amd64 libb-hooks-endofscope-perl all 0.26-1 [17.8 kB] Get:164 http://ftpmaster.internal/ubuntu mantic/main amd64 libsub-identify-perl amd64 0.14-3 [9928 B] Get:165 http://ftpmaster.internal/ubuntu mantic/main amd64 libsub-name-perl amd64 0.27-1 [11.0 kB] Get:166 http://ftpmaster.internal/ubuntu mantic/main amd64 libnamespace-clean-perl all 0.27-2 [14.0 kB] Get:167 http://ftpmaster.internal/ubuntu mantic-proposed/main amd64 libcurl3-gnutls amd64 8.2.1-1ubuntu2 [312 kB] Get:168 http://ftpmaster.internal/ubuntu mantic/universe amd64 libwww-curl-perl amd64 4.17-10 [56.2 kB] Get:169 http://ftpmaster.internal/ubuntu mantic/universe amd64 libwww-curl-simple-perl all 0.100191-3 [11.2 kB] Get:170 http://ftpmaster.internal/ubuntu mantic/universe amd64 dh-r all 20230707ubuntu1 [39.1 kB] Get:171 http://ftpmaster.internal/ubuntu mantic/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] Get:172 http://ftpmaster.internal/ubuntu mantic/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] Get:173 http://ftpmaster.internal/ubuntu mantic/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] Get:174 http://ftpmaster.internal/ubuntu mantic/main amd64 javascript-common all 11+nmu1 [5936 B] Get:175 http://ftpmaster.internal/ubuntu mantic/universe amd64 libboost1.81-dev amd64 1.81.0-6 [10.5 MB] Get:176 http://ftpmaster.internal/ubuntu mantic/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] Get:177 http://ftpmaster.internal/ubuntu mantic/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] Get:178 http://ftpmaster.internal/ubuntu mantic/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] Get:179 http://ftpmaster.internal/ubuntu mantic/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] Get:180 http://ftpmaster.internal/ubuntu mantic/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] Get:181 http://ftpmaster.internal/ubuntu mantic/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] Get:182 http://ftpmaster.internal/ubuntu mantic/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] Get:183 http://ftpmaster.internal/ubuntu mantic/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] Get:184 http://ftpmaster.internal/ubuntu mantic/universe amd64 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] Get:185 http://ftpmaster.internal/ubuntu mantic/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] Get:186 http://ftpmaster.internal/ubuntu mantic/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] Get:187 http://ftpmaster.internal/ubuntu mantic/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] Get:188 http://ftpmaster.internal/ubuntu mantic/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] Get:189 http://ftpmaster.internal/ubuntu mantic/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] Get:190 http://ftpmaster.internal/ubuntu mantic/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] Get:191 http://ftpmaster.internal/ubuntu mantic/main amd64 liblua5.3-0 amd64 5.3.6-2 [139 kB] Get:192 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-littler amd64 0.3.18-2 [92.7 kB] Get:193 http://ftpmaster.internal/ubuntu mantic/universe amd64 littler all 0.3.18-2 [2470 B] Get:194 http://ftpmaster.internal/ubuntu mantic/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] Get:195 http://ftpmaster.internal/ubuntu mantic/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] Get:196 http://ftpmaster.internal/ubuntu mantic/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] Get:197 http://ftpmaster.internal/ubuntu mantic/universe amd64 pandoc-data all 2.17.1.1-2ubuntu1 [82.8 kB] Get:198 http://ftpmaster.internal/ubuntu mantic/universe amd64 pandoc amd64 2.17.1.1-2ubuntu1 [23.1 MB] Get:199 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-bioc-biocgenerics all 0.46.0-1 [591 kB] Get:200 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-bioc-biobase amd64 2.60.0-1 [2138 kB] Get:201 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-bioc-s4vectors amd64 0.38.1+dfsg-1 [2052 kB] Get:202 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-bioc-iranges amd64 2.34.1-1 [2250 kB] Get:203 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-dbi all 1.1.3-1 [686 kB] Get:204 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] Get:205 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] Get:206 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-rlang amd64 1.1.1-1 [1656 kB] Get:207 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-cli amd64 3.6.1-1 [1319 kB] Get:208 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-glue amd64 1.6.2-1 [148 kB] Get:209 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-lifecycle all 1.0.3+dfsg-1 [109 kB] Get:210 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-vctrs amd64 0.6.3-1 [1333 kB] Get:211 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] Get:212 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] Get:213 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] Get:214 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] Get:215 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] Get:216 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] Get:217 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-cpp11 all 0.4.6-1 [227 kB] Get:218 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-rsqlite amd64 2.3.1-1 [1181 kB] Get:219 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-curl amd64 5.0.1+dfsg-1 [174 kB] Get:220 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-jsonlite amd64 1.8.5+dfsg-1 [441 kB] Get:221 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] Get:222 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] Get:223 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-askpass amd64 1.1-2 [22.4 kB] Get:224 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-openssl amd64 2.0.6+dfsg-1 [401 kB] Get:225 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] Get:226 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-httr all 1.4.6+dfsg-1 [469 kB] Get:227 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-png amd64 0.1-8-1 [40.5 kB] Get:228 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-bioc-zlibbioc all 1.46.0+dfsg-1 [9592 B] Get:229 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-bioc-xvector amd64 0.40.0-1 [622 kB] Get:230 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] Get:231 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-rcurl amd64 1.98-1.12+dfsg-1 [793 kB] Get:232 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-bioc-genomeinfodbdata all 1.2.10-1 [12.0 MB] Get:233 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-bioc-genomeinfodb all 1.36.1+dfsg-1 [3876 kB] Get:234 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] Get:235 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-bioc-biostrings amd64 2.68.1-1 [13.8 MB] Get:236 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-bioc-keggrest all 1.40.0+dfsg-1 [186 kB] Get:237 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-bioc-annotationdbi all 1.62.2-1 [4905 kB] Get:238 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-xml amd64 3.99-0.14-2 [1734 kB] Get:239 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] Get:240 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-bioc-annotate all 1.78.0+dfsg-1 [1728 kB] Get:241 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-bioc-genomicranges amd64 1.52.0+dfsg-1 [1819 kB] Get:242 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] Get:243 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-bioc-annotationfilter all 1.24.0+dfsg-1 [239 kB] Get:244 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] Get:245 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] Get:246 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-fansi amd64 1.0.4-1 [618 kB] Get:247 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-utf8 amd64 1.2.3-1 [140 kB] Get:248 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] Get:249 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] Get:250 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] Get:251 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB] Get:252 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-dplyr amd64 1.1.2-1 [1504 kB] Get:253 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-purrr amd64 1.0.1-1 [502 kB] Get:254 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-stringi amd64 1.7.12-1build1 [874 kB] Get:255 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-stringr all 1.5.0-1 [290 kB] Get:256 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-tidyr amd64 1.3.0-1 [1176 kB] Get:257 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-dbplyr all 2.3.3+dfsg-1 [1097 kB] Get:258 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-filelock amd64 1.0.2-2 [25.4 kB] Get:259 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-bioc-biocfilecache all 2.8.0+dfsg-1 [299 kB] Get:260 http://ftpmaster.internal/ubuntu mantic-proposed/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] Get:261 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-bioc-biocversion all 3.17.1-1 [11.1 kB] Get:262 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] Get:263 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-yaml amd64 2.3.7-1 [105 kB] Get:264 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] Get:265 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-rcpp amd64 1.0.11-1 [1975 kB] Get:266 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-later amd64 1.3.1+dfsg-1 [122 kB] Get:267 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-promises amd64 1.2.0.1+dfsg-1 [273 kB] Get:268 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-httpuv amd64 1.6.11+dfsg-1 [500 kB] Get:269 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-digest amd64 0.6.33-1 [185 kB] Get:270 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] Get:271 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] Get:272 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-htmltools amd64 0.5.5-1 [362 kB] Get:273 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-fontawesome all 0.5.1-1 [1295 kB] Get:274 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] Get:275 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-commonmark amd64 1.9.0-1 [130 kB] Get:276 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] Get:277 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-sass amd64 0.4.7+dfsg-1 [1006 kB] Get:278 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] Get:279 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-bslib all 0.4.2+dfsg-1 [3694 kB] Get:280 http://ftpmaster.internal/ubuntu mantic/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] Get:281 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-shiny all 1.7.4.1+dfsg-1 [2766 kB] Get:282 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-evaluate all 0.21-1 [95.7 kB] Get:283 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-xfun amd64 0.39+dfsg-1 [414 kB] Get:284 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] Get:285 http://ftpmaster.internal/ubuntu mantic/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] Get:286 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-knitr all 1.43+dfsg-2 [904 kB] Get:287 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-tinytex all 0.45-1 [137 kB] Get:288 http://ftpmaster.internal/ubuntu mantic/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] Get:289 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-rmarkdown all 2.23+dfsg-1 [1470 kB] Get:290 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-htmlwidgets all 1.6.2+dfsg-1 [120 kB] Get:291 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-crosstalk all 1.2.0+dfsg-1 [175 kB] Get:292 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-dt all 0.28+dfsg-1 [232 kB] Get:293 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-bioc-interactivedisplaybase all 1.38.0+dfsg-1 [30.4 kB] Get:294 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-bioc-annotationhub all 3.8.0+dfsg-1 [454 kB] Get:295 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-bioc-biocio all 1.10.0+dfsg-1 [213 kB] Get:296 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-formatr all 1.14-1 [152 kB] Get:297 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] Get:298 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] Get:299 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] Get:300 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] Get:301 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] Get:302 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-bh all 1.81.0-1 [5814 B] Get:303 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-bioc-biocparallel amd64 1.34.2-1 [1351 kB] Get:304 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] Get:305 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-prettyunits all 1.1.1-2build1 [39.6 kB] Get:306 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-progress all 1.2.2-2build1 [88.9 kB] Get:307 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-xml2 amd64 1.3.5-1 [282 kB] Get:308 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-bioc-biomart all 2.56.1+dfsg-1 [432 kB] Get:309 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-bioc-rhtslib amd64 2.2.0+dfsg-1 [1353 kB] Get:310 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-bioc-rsamtools amd64 2.16.0-1 [3844 kB] Get:311 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-matrixstats amd64 1.0.0-1 [488 kB] Get:312 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-bioc-matrixgenerics all 1.12.3-1 [411 kB] Get:313 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2.24.0+dfsg-1 [1489 kB] Get:351 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-clipr all 0.8.0-1 [53.5 kB] Get:352 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-tzdb amd64 0.4.0-2 [521 kB] Get:353 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-vroom amd64 1.6.3-2 [867 kB] Get:354 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-readr amd64 2.1.4-1 [787 kB] Get:355 http://ftpmaster.internal/ubuntu mantic-proposed/universe amd64 r-bioc-pfamanalyzer all 1.0.1+dfsg-2 [32.3 kB] Get:356 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-locfdr all 1.1-8-2 [306 kB] Get:357 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-pbapply all 1.7-2-1 [102 kB] Get:358 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-boot all 1.3-28.1-1 [617 kB] Get:359 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-bioc-saturn all 1.8.0+dfsg-3 [2954 kB] Get:360 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-bioc-sva amd64 3.48.0-1 [466 kB] Get:361 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-bioc-tximport all 1.28.0+dfsg-1 [87.7 kB] Get:362 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-bioc-tximeta all 1.18.1+dfsg-1 [144 kB] Get:363 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB] Get:364 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-plyr amd64 1.8.8-1 [832 kB] Get:365 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-reshape2 amd64 1.4.4-2build1 [114 kB] Get:366 http://ftpmaster.internal/ubuntu mantic/universe amd64 r-cran-venndiagram all 1.7.3-1 [266 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 314 MB in 2s (150 MB/s) Selecting previously unselected package libbsd0:amd64. 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Setting up xdg-utils (1.1.3-4.1ubuntu3) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libldap2:amd64 (2.6.6+dfsg-1~exp1ubuntu1) ... Setting up liburi-perl (5.19-2) ... Setting up libblas-dev:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up dctrl-tools (2.24-3build2) ... Setting up libjs-bootstrap (3.4.1+dfsg-3) ... Setting up libbz2-dev:amd64 (1.0.8-5build1) ... Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... Setting up libjs-jquery-datatables-extensions (0.0+git20150910.28fd64e+dfsg-5) ... Setting up libjpeg8:amd64 (8c-2ubuntu11) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up r-cran-bh (1.81.0-1) ... Setting up libpaper1:amd64 (1.1.29) ... Creating config file /etc/papersize with new version Setting up libice6:amd64 (2:1.0.10-1build2) ... Setting up libhttp-date-perl (6.05-2) ... Setting up libdw1:amd64 (0.189-4) ... Setting up libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... Setting up libxdmcp6:amd64 (1:1.1.3-0ubuntu5) ... Setting up liblapack3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.15-1) ... Setting up gettext (0.21-13) ... Setting up libpcre2-dev:amd64 (10.42-2) ... Setting up libtool (2.4.7-7) ... Setting up libxcb-render0:amd64 (1.15-1) ... Setting up fontconfig-config (2.14.2-3ubuntu1) ... Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... Setting up libpng-dev:amd64 (1.6.40-1) ... Setting up libcurl3-gnutls:amd64 (8.2.1-1ubuntu2) ... Setting up libxcb-shm0:amd64 (1.15-1) ... Setting up libpaper-utils (1.1.29) ... Setting up libclass-c3-perl (0.35-2) ... Setting up libdevel-callchecker-perl:amd64 (0.008-2) ... Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... Setting up pkgconf:amd64 (1.8.1-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libthai0:amd64 (0.1.29-1build1) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up pandoc (2.17.1.1-2ubuntu1) ... Setting up gfortran-13 (13.2.0-2ubuntu1) ... Setting up liblapack-dev:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libdata-optlist-perl (0.114-1) ... Setting up pkg-config:amd64 (1.8.1-2) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-2) ... Setting up libtiff6:amd64 (4.5.0-6ubuntu1) ... Setting up debugedit (1:5.0-5) ... Setting up libcurl4:amd64 (8.2.1-1ubuntu2) ... Setting up libx11-6:amd64 (2:1.8.6-1) ... Setting up libfontconfig1:amd64 (2.14.2-3ubuntu1) ... Setting up libmro-compat-perl (0.15-2) ... Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ... Setting up libsm6:amd64 (2:1.2.3-1build2) ... Setting up libxmuu1:amd64 (2:1.1.3-3) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (6.44-2ubuntu1) ... Setting up libeval-closure-perl (0.14-3) ... Setting up fontconfig (2.14.2-3ubuntu1) ... Regenerating fonts cache... done. Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libparams-classify-perl:amd64 (0.015-2build2) ... Setting up libpango-1.0-0:amd64 (1.51.0+ds-1) ... Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ... Setting up libxext6:amd64 (2:1.3.4-1build1) ... Setting up libwww-curl-perl:amd64 (4.17-10) ... Setting up man-db (2.11.2-3) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up gfortran (4:13.2.0-1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:amd64 (1.17.8-2) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up libxt6:amd64 (1:1.2.1-1.1) ... Setting up xauth (1:1.1.2-1) ... Setting up libxss1:amd64 (1:1.2.3-1build2) ... Setting up libpangoft2-1.0-0:amd64 (1.51.0+ds-1) ... Setting up libpangocairo-1.0-0:amd64 (1.51.0+ds-1) ... Setting up libxft2:amd64 (2.3.6-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libtk8.6:amd64 (8.6.13-2) ... Setting up debhelper (13.11.5ubuntu1) ... Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up libclass-load-perl (0.25-2) ... Setting up r-base-core (4.3.1-4) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.5.2-1) ... Setting up r-cran-locfdr (1.1-8-2) ... Setting up r-cran-labeling (0.4.2-1) ... Setting up r-cran-sourcetools (0.1.7-1-1) ... Setting up r-cran-futile.options (1.0.1-3build1) ... Setting up r-cran-lattice (0.21-8-2) ... Setting up r-cran-nlme (3.1.163-1) ... Setting up r-cran-farver (2.1.1-1) ... Setting up r-cran-formatr (1.14-1) ... Setting up r-cran-pbapply (1.7-2-1) ... Setting up r-cran-xml (3.99-0.14-2) ... Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up r-cran-viridislite (0.4.2-2) ... Setting up r-cran-locfit (1.5-9.8-1) ... Setting up r-cran-statmod (1.5.0-1) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-2build1) ... Setting up r-cran-lazyeval (0.2.2-1build1) ... Setting up r-cran-clipr (0.8.0-1) ... Setting up r-cran-commonmark (1.9.0-1) ... Setting up r-cran-r6 (2.5.1-1) ... Setting up r-cran-pkgkitten (0.2.3-1) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up r-cran-magrittr (2.0.3-1) ... Setting up r-cran-rappdirs (0.3.3-1) ... Setting up r-cran-filelock (1.0.2-2) ... Setting up r-bioc-genomeinfodbdata (1.2.10-1) ... Setting up r-cran-littler (0.3.18-2) ... Setting up r-cran-fs (1.6.3+dfsg-1) ... Setting up r-cran-rcpp (1.0.11-1) ... Setting up r-cran-curl (5.0.1+dfsg-1) ... Setting up r-cran-codetools (0.2-19-1) ... Setting up r-cran-boot (1.3-28.1-1) ... Setting up r-bioc-biocgenerics (0.46.0-1) ... Setting up r-cran-rlang (1.1.1-1) ... Setting up r-cran-matrixstats (1.0.0-1) ... Setting up r-base-dev (4.3.1-4) ... Setting up littler (0.3.18-2) ... Setting up r-bioc-matrixgenerics (1.12.3-1) ... Setting up r-cran-xfun (0.39+dfsg-1) ... Setting up r-cran-sys (3.4.2-1) ... Setting up r-cran-plogr (0.2.0-3build1) ... Setting up r-cran-withr (2.5.0-1) ... Setting up r-cran-mime (0.12-1) ... Setting up libmoose-perl:amd64 (2.2206-1) ... Setting up r-cran-generics (0.1.3-1) ... Setting up r-cran-base64enc (0.1-3-3) ... Setting up r-cran-abind (1.4-5-2) ... Setting up r-cran-digest (0.6.33-1) ... Setting up r-cran-yaml (2.3.7-1) ... Setting up r-cran-lambda.r (1.2.4-2build1) ... Setting up r-cran-xml2 (1.3.5-1) ... Setting up r-bioc-protgenerics (1.32.0-1) ... Setting up r-cran-evaluate (0.21-1) ... Setting up r-cran-dbi (1.1.3-1) ... Setting up r-cran-highr (0.10+dfsg-1) ... Setting up r-cran-prettyunits (1.1.1-2build1) ... Setting up r-cran-fansi (1.0.4-1) ... Setting up r-cran-mass (7.3-60-2) ... Setting up r-cran-snow (1:0.4.4-2) ... Setting up r-cran-glue (1.6.2-1) ... Setting up r-cran-bit (4.0.5-1) ... Setting up r-cran-xtable (1:1.8-4-2) ... Setting up r-cran-cli (3.6.1-1) ... Setting up r-cran-lifecycle (1.0.3+dfsg-1) ... Setting up r-cran-bitops (1.0-7-1) ... Setting up r-bioc-biocversion (3.17.1-1) ... Setting up r-cran-bit64 (4.0.5-1) ... Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... Setting up r-bioc-zlibbioc (1.46.0+dfsg-1) ... Setting up r-cran-askpass (1.1-2) ... Setting up r-cran-fastmap (1.1.1-1) ... Setting up r-cran-png (0.1-8-1) ... Setting up r-bioc-biobase (2.60.0-1) ... Setting up r-cran-jsonlite (1.8.5+dfsg-1) ... Setting up r-cran-pkgconfig (2.0.3-2build1) ... Setting up r-cran-utf8 (1.2.3-1) ... Setting up r-cran-colorspace (2.1-0+dfsg-1) ... Setting up r-cran-stringi (1.7.12-1build1) ... Setting up r-cran-hwriter (1.3.2.1-1) ... Setting up r-cran-cpp11 (0.4.6-1) ... Setting up r-cran-plyr (1.8.8-1) ... Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... Setting up r-bioc-s4vectors (0.38.1+dfsg-1) ... Setting up r-cran-isoband (0.2.7-1) ... Setting up r-cran-futile.logger (1.4.3-4build1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-bioc-limma (3.56.2+dfsg-1) ... Setting up r-cran-gtable (0.3.3+dfsg-1) ... Setting up r-cran-later (1.3.1+dfsg-1) ... Setting up r-cran-matrix (1.6-1-1) ... Setting up r-cran-tinytex (0.45-1) ... Setting up r-bioc-tximport (1.28.0+dfsg-1) ... Setting up r-cran-knitr (1.43+dfsg-2) ... Setting up r-cran-mgcv (1.9-0-1) ... Setting up r-cran-cachem (1.0.8-1) ... Setting up r-cran-rcpparmadillo (0.12.6.1.0-1) ... Setting up r-bioc-iranges (2.34.1-1) ... Setting up r-cran-rjson (0.2.21-1) ... Setting up r-cran-tzdb (0.4.0-2) ... Setting up r-cran-rcurl (1.98-1.12+dfsg-1) ... Setting up r-cran-restfulr (0.0.15-1) ... Setting up r-cran-vctrs (0.6.3-1) ... Setting up r-cran-pillar (1.9.0+dfsg-1) ... Setting up r-cran-ellipsis (0.3.2-2) ... Setting up r-cran-openssl (2.0.6+dfsg-1) ... Setting up r-bioc-s4arrays (1.0.5+dfsg-1) ... Setting up r-cran-stringr (1.5.0-1) ... Setting up r-bioc-biocparallel (1.34.2-1) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up r-bioc-edger (3.42.4+dfsg-1) ... Setting up r-bioc-rhtslib (2.2.0+dfsg-1) ... Setting up r-cran-venndiagram (1.7.3-1) ... Setting up r-cran-munsell (0.5.0-2build1) ... Setting up r-cran-tibble (3.2.1+dfsg-2) ... Setting up r-cran-survival (3.5-7-1) ... Setting up r-bioc-biocio (1.10.0+dfsg-1) ... Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... Setting up r-cran-reshape2 (1.4.4-2build1) ... Setting up r-bioc-genomeinfodb (1.36.1+dfsg-1) ... Setting up r-cran-httr (1.4.6+dfsg-1) ... Setting up r-cran-gridextra (2.3-3build1) ... Setting up r-cran-hms (1.1.3-1) ... Setting up r-cran-scales (1.2.1-1) ... Setting up r-cran-memoise (2.0.1-1) ... Setting up r-cran-promises (1.2.0.1+dfsg-1) ... Setting up r-cran-purrr (1.0.1-1) ... Setting up r-cran-blob (1.2.4-1) ... Setting up r-cran-htmltools (0.5.5-1) ... Setting up r-bioc-xvector (0.40.0-1) ... Setting up r-cran-sass (0.4.7+dfsg-1) ... Setting up r-cran-dplyr (1.1.2-1) ... Setting up dh-r (20230707ubuntu1) ... Setting up r-cran-rsqlite (2.3.1-1) ... Setting up r-cran-progress (1.2.2-2build1) ... Setting up r-bioc-delayedarray (0.26.7+dfsg-1) ... Setting up r-cran-vroom (1.6.3-2) ... Setting up r-cran-ggplot2 (3.4.2+dfsg-2) ... Setting up r-bioc-genomicranges (1.52.0+dfsg-1) ... Setting up r-cran-httpuv (1.6.11+dfsg-1) ... Setting up r-bioc-biostrings (2.68.1-1) ... Setting up r-bioc-annotationfilter (1.24.0+dfsg-1) ... Setting up r-cran-fontawesome (0.5.1-1) ... Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... Setting up r-cran-bslib (0.4.2+dfsg-1) ... Setting up r-cran-readr (2.1.4-1) ... Setting up r-cran-tidyr (1.3.0-1) ... Setting up r-bioc-rsamtools (2.16.0-1) ... Setting up r-cran-dbplyr (2.3.3+dfsg-1) ... Setting up r-bioc-summarizedexperiment (1.30.2+dfsg-1) ... Setting up r-bioc-biocfilecache (2.8.0+dfsg-1) ... Setting up r-bioc-keggrest (1.40.0+dfsg-1) ... Setting up r-bioc-deseq2 (1.40.2+dfsg-1) ... Setting up r-bioc-annotationdbi (1.62.2-1) ... Setting up r-cran-shiny (1.7.4.1+dfsg-1) ... Setting up r-bioc-pfamanalyzer (1.0.1+dfsg-2) ... Setting up r-bioc-annotate (1.78.0+dfsg-1) ... Setting up r-cran-rmarkdown (2.23+dfsg-1) ... Setting up r-bioc-biomart (2.56.1+dfsg-1) ... Setting up r-bioc-saturn (1.8.0+dfsg-3) ... Setting up r-bioc-genefilter (1.82.1-1) ... Setting up r-bioc-genomicalignments (1.36.0-1) ... Setting up r-bioc-geneplotter (1.78.0-1) ... Setting up r-cran-crosstalk (1.2.0+dfsg-1) ... Setting up r-bioc-rtracklayer (1.60.0-1) ... Setting up r-bioc-genomicfeatures (1.52.1+dfsg-1) ... Setting up r-bioc-dexseq (1.46.0+dfsg-1) ... Setting up r-cran-htmlwidgets (1.6.2+dfsg-1) ... Setting up r-bioc-sva (3.48.0-1) ... Setting up r-bioc-bsgenome (1.68.0-1) ... Setting up r-bioc-ensembldb (2.24.0+dfsg-1) ... Setting up r-cran-dt (0.28+dfsg-1) ... Setting up r-bioc-interactivedisplaybase (1.38.0+dfsg-1) ... Setting up r-bioc-annotationhub (3.8.0+dfsg-1) ... Setting up r-bioc-tximeta (1.18.1+dfsg-1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.38-1ubuntu3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-156-generic #173-Ubuntu SMP Tue Jul 11 07:25:22 UTC 2023 amd64 (x86_64) Toolchain package versions: binutils_2.41-4ubuntu1 dpkg-dev_1.21.22ubuntu1 g++-12_12.3.0-7ubuntu2 g++-13_13.2.0-2ubuntu1 gcc-12_12.3.0-7ubuntu2 gcc-13_13.2.0-2ubuntu1 libc6-dev_2.38-1ubuntu3 libstdc++-12-dev_12.3.0-7ubuntu2 libstdc++-13-dev_13.2.0-2ubuntu1 libstdc++6_13.2.0-2ubuntu1 linux-libc-dev_6.3.0-7.7 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 apt_2.7.3 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13 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tzdata_2023c-9ubuntu1 ubuntu-keyring_2021.03.26 ucf_3.0043+nmu1 unzip_6.0-28ubuntu1 usrmerge_35ubuntu1 util-linux_2.38.1-5ubuntu2 util-linux-extra_2.38.1-5ubuntu2 x11-common_1:7.7+23ubuntu2 xauth_1:1.1.2-1 xdg-utils_1.1.3-4.1ubuntu3 xz-utils_5.4.1-0.2 zip_3.0-13 zlib1g_1:1.2.13.dfsg-1ubuntu5 zlib1g-dev_1:1.2.13.dfsg-1ubuntu5 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-isoformswitchanalyzer Binary: r-bioc-isoformswitchanalyzer Architecture: any Version: 2.0.1+ds-1 Maintainer: Debian R Packages Maintainers Uploaders: Steffen Moeller Homepage: https://bioconductor.org/packages/IsoformSwitchAnalyzeR/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-isoformswitchanalyzer Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-isoformswitchanalyzer.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-limma, r-bioc-dexseq, r-bioc-saturn, r-bioc-sva, r-cran-ggplot2 (>= 3.3.5), r-bioc-pfamanalyzer, r-bioc-bsgenome, r-cran-plyr, r-cran-reshape2, r-cran-gridextra, r-bioc-biostrings, r-bioc-iranges, r-bioc-genomicranges, r-cran-rcolorbrewer, r-bioc-rtracklayer, r-cran-venndiagram, r-cran-dbi, r-bioc-genomeinfodb, r-bioc-tximport, r-bioc-tximeta, r-bioc-edger, r-cran-futile.logger, r-cran-stringr, r-cran-dplyr, r-cran-magrittr, r-cran-readr, r-cran-tibble, r-bioc-xvector, r-bioc-biocgenerics, r-cran-rcurl, r-bioc-biobase, r-bioc-summarizedexperiment, r-cran-tidyr, r-bioc-s4vectors, r-bioc-biocparallel Package-List: r-bioc-isoformswitchanalyzer deb gnu-r optional arch=any Checksums-Sha1: dc7a933c18518c3e0e23ae38f7b1fc85dc4da18d 3119316 r-bioc-isoformswitchanalyzer_2.0.1+ds.orig.tar.xz f9bb43a2591c0d37eda91a79f5d3aefbc9edfdb4 3008 r-bioc-isoformswitchanalyzer_2.0.1+ds-1.debian.tar.xz Checksums-Sha256: 7e0a12f6bc3c1ebe5876a58b41433c8ccc6f4872802bd894a45c3173b6a42fd2 3119316 r-bioc-isoformswitchanalyzer_2.0.1+ds.orig.tar.xz d8ffeda1c02952f8a54dd038437ffe09583a279e635539d3480c52a2bf0ae6e0 3008 r-bioc-isoformswitchanalyzer_2.0.1+ds-1.debian.tar.xz Files: 4a042cc0b7f8b73c4d70d5a3287f80bd 3119316 r-bioc-isoformswitchanalyzer_2.0.1+ds.orig.tar.xz 2d9acb24348d072c3f147e4d39ceed76 3008 r-bioc-isoformswitchanalyzer_2.0.1+ds-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmTby2sRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHEMA/5AYrMFJwsxeomJ5V7BkzSEQgB5wzZczdH PN6rVcEnKjNT0TjuKwxp4gHn5IG7PK9zZSeJnl8Msn9pLHLvB8vCbBvBLzyaMD7d G9WEXc/PKbQUu36YO4Rjxa1xmJztZRTsAKHJDN7NmEOMTarnAWfxeXKZbN4VyX3D Pr+GLDAy+pMQ402a7+27PzUM0jwIK/rZ1sU18a4wswjowWeaho35HpMMwg9dKpEH DYlBX6gwigmy2bzAcERmoNVC2wsAPH9a4a2fx+JEJlGI5hixA/WC5LrnyNXVYCgF m1tgtdgfxxvjJIoSKz9H4tikU4oSc8cLC9AZe41tysN1xlquKn/YD1RoOp/hoHCo TU6V3PfDU5V7LNx2gcYjc/+607cvu3Pd8bLY2N5QwfsetSX3SxlkggF2E9vtlpJD OKBGwFcfTUoeLwl5hWtR3/VS2Ziv5mWlPO5UziaT0e7f+k0aWOWoemn7GoOuKK6b aMTLComqAJGXuMPr5IZ1twZUpFNb4wB5Q4owcsQ+soHDddpRr0VONKEWBs1hnB4p u/6wZXkBvgbgfx6Z4GPhqxnVuuFwjStDbaGvrdWcROuN+cFqLKx8Y5MKxQgNQJKe WgxohObpLrSkl7UGkRKda3mydV9hUwGELEquRzawauJUUPgqjkibv/BfE6gEHRej Tbo6gRti+aU= =Lmjf -----END PGP SIGNATURE----- gpgv: Signature made Tue Aug 15 19:00:59 2023 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-isoformswitchanalyzer_2.0.1+ds-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-isoformswitchanalyzer in /<> dpkg-source: info: unpacking r-bioc-isoformswitchanalyzer_2.0.1+ds.orig.tar.xz dpkg-source: info: unpacking r-bioc-isoformswitchanalyzer_2.0.1+ds-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-26510853 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-26510853 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-26510853 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -b -rfakeroot dpkg-buildpackage: info: source package r-bioc-isoformswitchanalyzer dpkg-buildpackage: info: source version 2.0.1+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install I: R Package: IsoformSwitchAnalyzeR Version: 2.0.1 I: Building using R version 4.3.1-4 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Tue, 15 Aug 2023 20:55:47 +0200 mkdir -p /<>/r-bioc-isoformswitchanalyzer-2.0.1\+ds/debian/r-bioc-isoformswitchanalyzer/usr/lib/R/site-library R CMD INSTALL -l /<>/r-bioc-isoformswitchanalyzer-2.0.1\+ds/debian/r-bioc-isoformswitchanalyzer/usr/lib/R/site-library --clean . "--built-timestamp='Tue, 15 Aug 2023 20:55:47 +0200'" * installing *source* package ‘IsoformSwitchAnalyzeR’ ... ** using staged installation ** libs using C compiler: ‘gcc (Ubuntu 13.2.0-2ubuntu1) 13.2.0’ make[2]: Entering directory '/<>/src' gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-T5jtMm/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/build/r-base-T5jtMm/r-base-4.3.1=/usr/src/r-base-4.3.1-4 -Wdate-time -D_FORTIFY_SOURCE=2 -c utils.c -o utils.o gcc -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -o IsoformSwitchAnalyzeR.so utils.o -L/usr/lib/R/lib -lR make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>/src' make[2]: Leaving directory '/<>/src' installing to /<>/debian/r-bioc-isoformswitchanalyzer/usr/lib/R/site-library/00LOCK-r-bioc-isoformswitchanalyzer-2.0.1+ds/00new/IsoformSwitchAnalyzeR/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IsoformSwitchAnalyzeR) Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 302. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 303. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 306. W: Ignoring specified R dependency: R (>= 4.2) I: Using r-bioc-limma for Depends:limma I: Using r-bioc-dexseq for Depends:DEXSeq I: Using r-bioc-saturn for Depends:satuRn (>= 1.7.0) I: Using r-bioc-sva for Depends:sva I: Using r-cran-ggplot2 for Depends:ggplot2 (>= 3.3.5) I: Using r-bioc-pfamanalyzer for Depends:pfamAnalyzeR I: Using r-cran-knitr for Suggests:knitr W: Cannot find a debian package for Suggests:BSgenome.Hsapiens.UCSC.hg19 I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-bioc-bsgenome for Imports:BSgenome I: Using r-cran-plyr for Imports:plyr I: Using r-cran-reshape2 for Imports:reshape2 I: Using r-cran-gridextra for Imports:gridExtra I: Using r-bioc-biostrings for Imports:Biostrings (>= 2.50.0) I: Using r-bioc-iranges for Imports:IRanges I: Using r-bioc-genomicranges for Imports:GenomicRanges I: Using r-cran-rcolorbrewer for Imports:RColorBrewer I: Using r-bioc-rtracklayer for Imports:rtracklayer I: Using r-cran-venndiagram for Imports:VennDiagram I: Using r-cran-dbi for Imports:DBI I: Using r-bioc-genomeinfodb for Imports:GenomeInfoDb I: Using r-bioc-tximport for Imports:tximport (>= 1.7.1) I: Using r-bioc-tximeta for Imports:tximeta (>= 1.7.12) I: Using r-bioc-edger for Imports:edgeR I: Using r-cran-futile.logger for Imports:futile.logger I: Using r-cran-stringr for Imports:stringr I: Using r-cran-dplyr for Imports:dplyr I: Using r-cran-magrittr for Imports:magrittr I: Using r-cran-readr for Imports:readr I: Using r-cran-tibble for Imports:tibble I: Using r-bioc-xvector for Imports:XVector I: Using r-bioc-biocgenerics for Imports:BiocGenerics I: Using r-cran-rcurl for Imports:RCurl I: Using r-bioc-biobase for Imports:Biobase I: Using r-bioc-summarizedexperiment for Imports:SummarizedExperiment I: Using r-cran-tidyr for Imports:tidyr I: Using r-bioc-s4vectors for Imports:S4Vectors I: Using r-bioc-biocparallel for Imports:BiocParallel I: BioConductor API version: r-api-bioc-3.17 I: Use r-bioc-isoformswitchanalyzer as Debian binary package for variables substitution # upstream's file is not gzipped mv debian/r-bioc-isoformswitchanalyzer/usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/example_isoform_nt.fasta.gz \ debian/r-bioc-isoformswitchanalyzer/usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/example_isoform_nt.fasta gzip debian/r-bioc-isoformswitchanalyzer/usr/lib/R/site-library/IsoformSwitchAnalyzeR/extdata/example_isoform_nt.fasta make[1]: Leaving directory '/<>' dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R fb6d8d5c65fea031486efaa0cb91a95c728a2e66 dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dpkg-gencontrol: warning: Depends field of package r-bioc-isoformswitchanalyzer: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package r-bioc-isoformswitchanalyzer: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R INFO: pkgstriptranslations version 153 INFO: pkgstriptranslations version 153 pkgstriptranslations: processing r-bioc-isoformswitchanalyzer (in debian/r-bioc-isoformswitchanalyzer); do_strip: , oemstrip: pkgstriptranslations: processing r-bioc-isoformswitchanalyzer-dbgsym (in debian/.debhelper/r-bioc-isoformswitchanalyzer/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-bioc-isoformswitchanalyzer/DEBIAN/control, package r-bioc-isoformswitchanalyzer, directory debian/r-bioc-isoformswitchanalyzer pkgstripfiles: processing control file: debian/.debhelper/r-bioc-isoformswitchanalyzer/dbgsym-root/DEBIAN/control, package r-bioc-isoformswitchanalyzer-dbgsym, directory debian/.debhelper/r-bioc-isoformswitchanalyzer/dbgsym-root dpkg-deb: building package 'r-bioc-isoformswitchanalyzer-dbgsym' in 'debian/.debhelper/scratch-space/build-r-bioc-isoformswitchanalyzer/r-bioc-isoformswitchanalyzer-dbgsym_2.0.1+ds-1_amd64.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-bioc-isoformswitchanalyzer ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-bioc-isoformswitchanalyzer' in '../r-bioc-isoformswitchanalyzer_2.0.1+ds-1_amd64.deb'. Renaming r-bioc-isoformswitchanalyzer-dbgsym_2.0.1+ds-1_amd64.deb to r-bioc-isoformswitchanalyzer-dbgsym_2.0.1+ds-1_amd64.ddeb dpkg-genbuildinfo --build=binary -O../r-bioc-isoformswitchanalyzer_2.0.1+ds-1_amd64.buildinfo dpkg-genchanges --build=binary -mLaunchpad Build Daemon -O../r-bioc-isoformswitchanalyzer_2.0.1+ds-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-08-16T01:56:25Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-bioc-isoformswitchanalyzer_2.0.1+ds-1_amd64.changes: ------------------------------------------------------ Format: 1.8 Date: Tue, 15 Aug 2023 20:55:47 +0200 Source: r-bioc-isoformswitchanalyzer Binary: r-bioc-isoformswitchanalyzer Built-For-Profiles: noudeb Architecture: amd64 Version: 2.0.1+ds-1 Distribution: mantic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: r-bioc-isoformswitchanalyzer - Identify, Annotate and Visualize Alternative Splicing and Changes: r-bioc-isoformswitchanalyzer (2.0.1+ds-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.2 (routine-update) * dh-update-R to update Build-Depends (routine-update) * Add autopkgtest-pkg-r.conf Checksums-Sha1: 78bf050b6a842b13bd81bb01511dc3e48df697f0 3330 r-bioc-isoformswitchanalyzer-dbgsym_2.0.1+ds-1_amd64.ddeb d1b47508b038cba4dfafac965c1c5871d51cc15a 17311 r-bioc-isoformswitchanalyzer_2.0.1+ds-1_amd64.buildinfo fe56078f528524af59d0af36721ca99c20b4809a 4106426 r-bioc-isoformswitchanalyzer_2.0.1+ds-1_amd64.deb Checksums-Sha256: 085d56b7341a79dd9dde4e39ef511cfb1cd36b82fb875cfb87568155db873d72 3330 r-bioc-isoformswitchanalyzer-dbgsym_2.0.1+ds-1_amd64.ddeb b24bba54c85264754c78999b6517d7965a2804fcba028350b98ca8e227bd6624 17311 r-bioc-isoformswitchanalyzer_2.0.1+ds-1_amd64.buildinfo 60ec3efd1249b6c8496200e1c638f2573781ba62ff74eeff16891e8e3e190c96 4106426 r-bioc-isoformswitchanalyzer_2.0.1+ds-1_amd64.deb Files: fa8ffaed7fdf3edc983fbad26f481cd5 3330 debug optional r-bioc-isoformswitchanalyzer-dbgsym_2.0.1+ds-1_amd64.ddeb cff591d31638300b59005c9272013efc 17311 gnu-r optional r-bioc-isoformswitchanalyzer_2.0.1+ds-1_amd64.buildinfo be1c93281321a4e8b69b3351424e39ab 4106426 gnu-r optional r-bioc-isoformswitchanalyzer_2.0.1+ds-1_amd64.deb /<>/r-bioc-isoformswitchanalyzer_2.0.1+ds-1_amd64.changes.new could not be renamed to /<>/r-bioc-isoformswitchanalyzer_2.0.1+ds-1_amd64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: r-bioc-isoformswitchanalyzer Binary: r-bioc-isoformswitchanalyzer r-bioc-isoformswitchanalyzer-dbgsym Architecture: amd64 Version: 2.0.1+ds-1 Checksums-Md5: fa8ffaed7fdf3edc983fbad26f481cd5 3330 r-bioc-isoformswitchanalyzer-dbgsym_2.0.1+ds-1_amd64.ddeb be1c93281321a4e8b69b3351424e39ab 4106426 r-bioc-isoformswitchanalyzer_2.0.1+ds-1_amd64.deb Checksums-Sha1: 78bf050b6a842b13bd81bb01511dc3e48df697f0 3330 r-bioc-isoformswitchanalyzer-dbgsym_2.0.1+ds-1_amd64.ddeb fe56078f528524af59d0af36721ca99c20b4809a 4106426 r-bioc-isoformswitchanalyzer_2.0.1+ds-1_amd64.deb Checksums-Sha256: 085d56b7341a79dd9dde4e39ef511cfb1cd36b82fb875cfb87568155db873d72 3330 r-bioc-isoformswitchanalyzer-dbgsym_2.0.1+ds-1_amd64.ddeb 60ec3efd1249b6c8496200e1c638f2573781ba62ff74eeff16891e8e3e190c96 4106426 r-bioc-isoformswitchanalyzer_2.0.1+ds-1_amd64.deb Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Wed, 16 Aug 2023 01:56:24 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-13), autotools-dev (= 20220109.1), base-files (= 13ubuntu1), base-passwd (= 3.6.1), bash (= 5.2.15-2ubuntu1), binutils (= 2.41-4ubuntu1), binutils-common (= 2.41-4ubuntu1), binutils-x86-64-linux-gnu (= 2.41-4ubuntu1), bsdextrautils (= 2.38.1-5ubuntu2), bsdutils (= 1:2.38.1-5ubuntu2), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5build1), ca-certificates (= 20230311ubuntu1), coreutils (= 9.1-1ubuntu2), cpp (= 4:13.2.0-1ubuntu1), cpp-12 (= 12.3.0-7ubuntu2), cpp-13 (= 13.2.0-2ubuntu1), dash (= 0.5.12-6ubuntu1), dctrl-tools (= 2.24-3build2), debconf (= 1.5.82), debhelper (= 13.11.5ubuntu1), debianutils (= 5.8-1), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-r (= 20230707ubuntu1), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.8-4), dpkg (= 1.21.22ubuntu1), dpkg-dev (= 1.21.22ubuntu1), dwz (= 0.15-1), file (= 1:5.44-3), findutils (= 4.9.0-5), fontconfig (= 2.14.2-3ubuntu1), fontconfig-config (= 2.14.2-3ubuntu1), fonts-font-awesome (= 5.0.10+really4.7.0~dfsg-4.1), fonts-glyphicons-halflings (= 1.009~3.4.1+dfsg-3), fonts-mathjax (= 2.7.9+dfsg-1), fonts-noto-core (= 20201225-1build1), g++ (= 4:13.2.0-1ubuntu1), g++-13 (= 13.2.0-2ubuntu1), gcc (= 4:13.2.0-1ubuntu1), gcc-12 (= 12.3.0-7ubuntu2), gcc-12-base (= 12.3.0-7ubuntu2), gcc-13 (= 13.2.0-2ubuntu1), gcc-13-base (= 13.2.0-2ubuntu1), gettext (= 0.21-13), gettext-base (= 0.21-13), gfortran (= 4:13.2.0-1ubuntu1), gfortran-13 (= 13.2.0-2ubuntu1), grep (= 3.11-2), groff-base (= 1.23.0-2), gzip (= 1.12-1ubuntu1), hostname (= 3.23+nmu1ubuntu1), icu-devtools (= 72.1-3ubuntu2), init-system-helpers (= 1.65.2ubuntu1), intltool-debian (= 0.35.0+20060710.6), javascript-common (= 11+nmu1), libacl1 (= 2.3.1-3), libalgorithm-c3-perl (= 0.11-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 13.2.0-2ubuntu1), libatomic1 (= 13.2.0-2ubuntu1), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.1.1-1), libaudit1 (= 1:3.1.1-1), libb-hooks-endofscope-perl (= 0.26-1), libb-hooks-op-check-perl (= 0.22-2build1), libbinutils (= 2.41-4ubuntu1), libblas-dev (= 3.11.0-2), libblas3 (= 3.11.0-2), libblkid1 (= 2.38.1-5ubuntu2), libboost1.81-dev (= 1.81.0-6), libbrotli1 (= 1.0.9-2build8), libbsd0 (= 0.11.7-4), libbz2-1.0 (= 1.0.8-5build1), libbz2-dev (= 1.0.8-5build1), libc-bin (= 2.38-1ubuntu3), libc-dev-bin (= 2.38-1ubuntu3), libc6 (= 2.38-1ubuntu3), libc6-dev (= 2.38-1ubuntu3), libcairo2 (= 1.17.8-2), libcap-ng0 (= 0.8.3-1build2), libcap2 (= 1:2.66-4ubuntu1), libcc1-0 (= 13.2.0-2ubuntu1), libclass-c3-perl (= 0.35-2), libclass-load-perl (= 0.25-2), libclass-load-xs-perl (= 0.10-2build1), libclone-perl (= 0.46-1), libcom-err2 (= 1.47.0-2ubuntu1), libcrypt-dev (= 1:4.4.36-2), libcrypt1 (= 1:4.4.36-2), libctf-nobfd0 (= 2.41-4ubuntu1), libctf0 (= 2.41-4ubuntu1), libcurl3-gnutls (= 8.2.1-1ubuntu2), libcurl4 (= 8.2.1-1ubuntu2), libdata-optlist-perl (= 0.114-1), libdatrie1 (= 0.2.13-2), libdb5.3 (= 5.3.28+dfsg2-2), libdebconfclient0 (= 0.270ubuntu1), libdebhelper-perl (= 13.11.5ubuntu1), libdeflate0 (= 1.18-1), libdevel-callchecker-perl (= 0.008-2), libdevel-globaldestruction-perl (= 0.14-4), libdevel-overloadinfo-perl (= 0.007-1), libdevel-stacktrace-perl (= 2.0400-2), libdist-checkconflicts-perl (= 0.11-2), libdpkg-perl (= 1.21.22ubuntu1), libdw1 (= 0.189-4), libdynaloader-functions-perl (= 0.003-3), libelf1 (= 0.189-4), libencode-locale-perl (= 1.05-3), libeval-closure-perl (= 0.14-3), libexpat1 (= 2.5.0-2), libffi8 (= 3.4.4-1), libfile-stripnondeterminism-perl (= 1.13.1-1), libfile-which-perl (= 1.27-2), libfontconfig1 (= 2.14.2-3ubuntu1), libfreetype6 (= 2.13.0+dfsg-1), libfribidi0 (= 1.0.13-3), libgcc-12-dev (= 12.3.0-7ubuntu2), libgcc-13-dev (= 13.2.0-2ubuntu1), libgcc-s1 (= 13.2.0-2ubuntu1), libgcrypt20 (= 1.10.2-2ubuntu1), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgfortran-13-dev (= 13.2.0-2ubuntu1), libgfortran5 (= 13.2.0-2ubuntu1), libglib2.0-0 (= 2.77.2-1), libgmp10 (= 2:6.3.0+dfsg-2ubuntu3), libgnutls30 (= 3.8.1-3ubuntu1), libgomp1 (= 13.2.0-2ubuntu1), libgpg-error0 (= 1.47-2), libgprofng0 (= 2.41-4ubuntu1), libgraphite2-3 (= 1.3.14-1build2), libgssapi-krb5-2 (= 1.20.1-2), libharfbuzz0b (= 8.0.1-1), libhogweed6 (= 3.9.1-2), libhttp-date-perl (= 6.05-2), libhttp-message-perl (= 6.44-2ubuntu1), libhwasan0 (= 13.2.0-2ubuntu1), libice6 (= 2:1.0.10-1build2), libicu-dev (= 72.1-3ubuntu2), libicu72 (= 72.1-3ubuntu2), libidn2-0 (= 2.3.4-1), libio-html-perl (= 1.004-3), libisl23 (= 0.26-3), libitm1 (= 13.2.0-2ubuntu1), libjansson4 (= 2.14-2), libjbig0 (= 2.1-6.1ubuntu1), libjpeg-dev (= 8c-2ubuntu11), libjpeg-turbo8 (= 2.1.5-2ubuntu1), libjpeg-turbo8-dev (= 2.1.5-2ubuntu1), libjpeg8 (= 8c-2ubuntu11), libjpeg8-dev (= 8c-2ubuntu11), libjs-bootstrap (= 3.4.1+dfsg-3), libjs-bootstrap4 (= 4.6.1+dfsg1-4), libjs-d3 (= 3.5.17-4), libjs-es5-shim (= 4.6.7-2), libjs-highlight.js (= 9.18.5+dfsg1-2), libjs-jquery (= 3.6.1+dfsg+~3.5.14-1), libjs-jquery-datatables (= 1.11.5+dfsg-2), libjs-jquery-datatables-extensions (= 0.0+git20150910.28fd64e+dfsg-5), libjs-jquery-selectize.js (= 0.12.6+dfsg-1.1), libjs-jquery-ui (= 1.13.2+dfsg-1), libjs-json (= 0~20221030+~1.0.8-1), libjs-mathjax (= 2.7.9+dfsg-1), libjs-microplugin.js (= 0.0.3+dfsg-1.1), libjs-modernizr (= 2.6.2+ds1-5), libjs-popper.js (= 1.16.1+ds-6), libjs-prettify (= 2015.12.04+dfsg-1.1), libjs-sifter.js (= 0.6.0+dfsg-3), libjs-twitter-bootstrap-datepicker (= 1.3.1+dfsg1-4.1), libk5crypto3 (= 1.20.1-2), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-2), libkrb5support0 (= 1.20.1-2), liblapack-dev (= 3.11.0-2), liblapack3 (= 3.11.0-2), libldap2 (= 2.6.6+dfsg-1~exp1ubuntu1), liblerc4 (= 4.0.0+ds-2ubuntu2), liblsan0 (= 13.2.0-2ubuntu1), liblua5.3-0 (= 5.3.6-2), liblwp-mediatypes-perl (= 6.04-2), liblz4-1 (= 1.9.4-1), liblzma-dev (= 5.4.1-0.2), liblzma5 (= 5.4.1-0.2), libmagic-mgc (= 1:5.44-3), libmagic1 (= 1:5.44-3), libmd0 (= 1.1.0-1), libmodule-implementation-perl (= 0.09-2), libmodule-runtime-conflicts-perl (= 0.003-2), libmodule-runtime-perl (= 0.016-2), libmoose-perl (= 2.2206-1), libmount1 (= 2.38.1-5ubuntu2), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.0-1), libmro-compat-perl (= 0.15-2), libnamespace-clean-perl (= 0.27-2), libncurses-dev (= 6.4+20230625-2), libncurses6 (= 6.4+20230625-2), libncursesw6 (= 6.4+20230625-2), libnettle8 (= 3.9.1-2), libnghttp2-14 (= 1.55.1-1), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libp11-kit0 (= 0.24.1-2ubuntu1), libpackage-deprecationmanager-perl (= 0.18-1), libpackage-stash-perl (= 0.40-1), libpackage-stash-xs-perl (= 0.30-1build1), libpam-modules (= 1.5.2-6ubuntu1), libpam-modules-bin (= 1.5.2-6ubuntu1), libpam-runtime (= 1.5.2-6ubuntu1), libpam0g (= 1.5.2-6ubuntu1), libpango-1.0-0 (= 1.51.0+ds-1), libpangocairo-1.0-0 (= 1.51.0+ds-1), libpangoft2-1.0-0 (= 1.51.0+ds-1), libpaper-utils (= 1.1.29), libpaper1 (= 1.1.29), libparams-classify-perl (= 0.015-2build2), libparams-util-perl (= 1.102-2), libpcre2-16-0 (= 10.42-2), libpcre2-32-0 (= 10.42-2), libpcre2-8-0 (= 10.42-2), libpcre2-dev (= 10.42-2), libpcre2-posix3 (= 10.42-2), libperl5.36 (= 5.36.0-7ubuntu1), libpipeline1 (= 1.5.7-1), libpixman-1-0 (= 0.42.2-1), libpkgconf3 (= 1.8.1-2), libpng-dev (= 1.6.40-1), libpng16-16 (= 1.6.40-1), libpsl5 (= 0.21.2-1), libquadmath0 (= 13.2.0-2ubuntu1), libreadline-dev (= 8.2-1.3), libreadline8 (= 8.2-1.3), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build4), libsasl2-2 (= 2.1.28+dfsg1-3), libsasl2-modules-db (= 2.1.28+dfsg1-3), libseccomp2 (= 2.5.4-1ubuntu3), libselinux1 (= 3.5-1), libsframe1 (= 2.41-4ubuntu1), libsm6 (= 2:1.2.3-1build2), libsmartcols1 (= 2.38.1-5ubuntu2), libssh-4 (= 0.10.5-2), libssl3 (= 3.0.10-1ubuntu2), libstdc++-13-dev (= 13.2.0-2ubuntu1), libstdc++6 (= 13.2.0-2ubuntu1), libsub-exporter-perl (= 0.990-1), libsub-exporter-progressive-perl (= 0.001013-3), libsub-identify-perl (= 0.14-3), libsub-install-perl (= 0.929-1), libsub-name-perl (= 0.27-1), libsub-override-perl (= 0.09-4), libswitch-perl (= 2.17-3), libsystemd0 (= 253.5-1ubuntu2), libtasn1-6 (= 4.19.0-3), libtcl8.6 (= 8.6.13+dfsg-2), libthai-data (= 0.1.29-1build1), libthai0 (= 0.1.29-1build1), libtiff6 (= 4.5.0-6ubuntu1), libtimedate-perl (= 2.3300-2), libtinfo6 (= 6.4+20230625-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtk8.6 (= 8.6.13-2), libtool (= 2.4.7-7), libtry-tiny-perl (= 0.31-2), libtsan2 (= 13.2.0-2ubuntu1), libubsan1 (= 13.2.0-2ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 253.5-1ubuntu2), libunistring2 (= 1.0-2), liburi-perl (= 5.19-2), libuuid1 (= 2.38.1-5ubuntu2), libuv1 (= 1.44.2-1), libvariable-magic-perl (= 0.63-1), libwebp7 (= 1.2.4-0.2), libwww-curl-perl (= 4.17-10), libwww-curl-simple-perl (= 0.100191-3), libx11-6 (= 2:1.8.6-1), libx11-data (= 2:1.8.6-1), libxau6 (= 1:1.0.9-1build5), libxcb-render0 (= 1.15-1), libxcb-shm0 (= 1.15-1), libxcb1 (= 1.15-1), libxdmcp6 (= 1:1.1.3-0ubuntu5), libxext6 (= 2:1.3.4-1build1), libxft2 (= 2.3.6-1), libxml2 (= 2.9.14+dfsg-1.3), libxmuu1 (= 2:1.1.3-3), libxrender1 (= 1:0.9.10-1.1), libxss1 (= 1:1.2.3-1build2), libxt6 (= 1:1.2.1-1.1), libyaml-0-2 (= 0.2.5-1), libzstd1 (= 1.5.5+dfsg2-1ubuntu2), linux-libc-dev (= 6.3.0-7.7), littler (= 0.3.18-2), login (= 1:4.13+dfsg1-1ubuntu1), lsb-base (= 11.6), lto-disabled-list (= 42), m4 (= 1.4.19-3), make (= 4.3-4.1build1), man-db (= 2.11.2-3), mawk (= 1.3.4.20230730-1), ncurses-base (= 6.4+20230625-2), ncurses-bin (= 6.4+20230625-2), node-bootstrap-sass (= 3.4.3-2), node-html5shiv (= 3.7.3+dfsg-5), node-normalize.css (= 8.0.1-5), openssl (= 3.0.10-1ubuntu2), pandoc (= 2.17.1.1-2ubuntu1), pandoc-data (= 2.17.1.1-2ubuntu1), patch (= 2.7.6-7build2), perl (= 5.36.0-7ubuntu1), perl-base (= 5.36.0-7ubuntu1), perl-modules-5.36 (= 5.36.0-7ubuntu1), pkg-config (= 1.8.1-2), pkgconf (= 1.8.1-2), pkgconf-bin (= 1.8.1-2), po-debconf (= 1.0.21+nmu1), r-base-core (= 4.3.1-4), r-base-dev (= 4.3.1-4), r-bioc-annotate (= 1.78.0+dfsg-1), r-bioc-annotationdbi (= 1.62.2-1), r-bioc-annotationfilter (= 1.24.0+dfsg-1), r-bioc-annotationhub (= 3.8.0+dfsg-1), r-bioc-biobase (= 2.60.0-1), r-bioc-biocfilecache (= 2.8.0+dfsg-1), r-bioc-biocgenerics (= 0.46.0-1), r-bioc-biocio (= 1.10.0+dfsg-1), r-bioc-biocparallel (= 1.34.2-1), r-bioc-biocversion (= 3.17.1-1), r-bioc-biomart (= 2.56.1+dfsg-1), r-bioc-biostrings (= 2.68.1-1), r-bioc-bsgenome (= 1.68.0-1), r-bioc-delayedarray (= 0.26.7+dfsg-1), r-bioc-deseq2 (= 1.40.2+dfsg-1), r-bioc-dexseq (= 1.46.0+dfsg-1), r-bioc-edger (= 3.42.4+dfsg-1), r-bioc-ensembldb (= 2.24.0+dfsg-1), r-bioc-genefilter (= 1.82.1-1), r-bioc-geneplotter (= 1.78.0-1), r-bioc-genomeinfodb (= 1.36.1+dfsg-1), r-bioc-genomeinfodbdata (= 1.2.10-1), r-bioc-genomicalignments (= 1.36.0-1), r-bioc-genomicfeatures (= 1.52.1+dfsg-1), r-bioc-genomicranges (= 1.52.0+dfsg-1), r-bioc-interactivedisplaybase (= 1.38.0+dfsg-1), r-bioc-iranges (= 2.34.1-1), r-bioc-keggrest (= 1.40.0+dfsg-1), r-bioc-limma (= 3.56.2+dfsg-1), r-bioc-matrixgenerics (= 1.12.3-1), r-bioc-pfamanalyzer (= 1.0.1+dfsg-2), r-bioc-protgenerics (= 1.32.0-1), r-bioc-rhtslib (= 2.2.0+dfsg-1), r-bioc-rsamtools (= 2.16.0-1), r-bioc-rtracklayer (= 1.60.0-1), r-bioc-s4arrays (= 1.0.5+dfsg-1), r-bioc-s4vectors (= 0.38.1+dfsg-1), r-bioc-saturn (= 1.8.0+dfsg-3), r-bioc-summarizedexperiment (= 1.30.2+dfsg-1), r-bioc-sva (= 3.48.0-1), r-bioc-tximeta (= 1.18.1+dfsg-1), r-bioc-tximport (= 1.28.0+dfsg-1), r-bioc-xvector (= 0.40.0-1), r-bioc-zlibbioc (= 1.46.0+dfsg-1), r-cran-abind (= 1.4-5-2), r-cran-askpass (= 1.1-2), r-cran-base64enc (= 0.1-3-3), r-cran-bh (= 1.81.0-1), r-cran-biocmanager (= 1.30.22+dfsg-2), r-cran-bit (= 4.0.5-1), r-cran-bit64 (= 4.0.5-1), r-cran-bitops (= 1.0-7-1), r-cran-blob (= 1.2.4-1), r-cran-boot (= 1.3-28.1-1), r-cran-bslib (= 0.4.2+dfsg-1), r-cran-cachem (= 1.0.8-1), r-cran-cli (= 3.6.1-1), r-cran-clipr (= 0.8.0-1), r-cran-codetools (= 0.2-19-1), r-cran-colorspace (= 2.1-0+dfsg-1), r-cran-commonmark (= 1.9.0-1), r-cran-cpp11 (= 0.4.6-1), r-cran-crayon (= 1.5.2-1), r-cran-crosstalk (= 1.2.0+dfsg-1), r-cran-curl (= 5.0.1+dfsg-1), r-cran-dbi (= 1.1.3-1), r-cran-dbplyr (= 2.3.3+dfsg-1), r-cran-digest (= 0.6.33-1), r-cran-dplyr (= 1.1.2-1), r-cran-dt (= 0.28+dfsg-1), r-cran-ellipsis (= 0.3.2-2), r-cran-evaluate (= 0.21-1), r-cran-fansi (= 1.0.4-1), r-cran-farver (= 2.1.1-1), r-cran-fastmap (= 1.1.1-1), r-cran-filelock (= 1.0.2-2), r-cran-fontawesome (= 0.5.1-1), r-cran-formatr (= 1.14-1), r-cran-fs (= 1.6.3+dfsg-1), r-cran-futile.logger (= 1.4.3-4build1), r-cran-futile.options (= 1.0.1-3build1), r-cran-generics (= 0.1.3-1), r-cran-ggplot2 (= 3.4.2+dfsg-2), r-cran-glue (= 1.6.2-1), r-cran-gridextra (= 2.3-3build1), r-cran-gtable (= 0.3.3+dfsg-1), r-cran-highr (= 0.10+dfsg-1), r-cran-hms (= 1.1.3-1), r-cran-htmltools (= 0.5.5-1), r-cran-htmlwidgets (= 1.6.2+dfsg-1), r-cran-httpuv (= 1.6.11+dfsg-1), r-cran-httr (= 1.4.6+dfsg-1), r-cran-hwriter (= 1.3.2.1-1), r-cran-isoband (= 0.2.7-1), r-cran-jquerylib (= 0.1.4+dfsg-4), r-cran-jsonlite (= 1.8.5+dfsg-1), r-cran-knitr (= 1.43+dfsg-2), r-cran-labeling (= 0.4.2-1), r-cran-lambda.r (= 1.2.4-2build1), r-cran-later (= 1.3.1+dfsg-1), r-cran-lattice (= 0.21-8-2), r-cran-lazyeval (= 0.2.2-1build1), r-cran-lifecycle (= 1.0.3+dfsg-1), r-cran-littler (= 0.3.18-2), r-cran-locfdr (= 1.1-8-2), r-cran-locfit (= 1.5-9.8-1), r-cran-magrittr (= 2.0.3-1), r-cran-mass (= 7.3-60-2), r-cran-matrix (= 1.6-1-1), r-cran-matrixstats (= 1.0.0-1), r-cran-memoise (= 2.0.1-1), r-cran-mgcv (= 1.9-0-1), r-cran-mime (= 0.12-1), r-cran-munsell (= 0.5.0-2build1), r-cran-nlme (= 3.1.163-1), r-cran-openssl (= 2.0.6+dfsg-1), r-cran-pbapply (= 1.7-2-1), r-cran-pillar (= 1.9.0+dfsg-1), r-cran-pkgconfig (= 2.0.3-2build1), r-cran-pkgkitten (= 0.2.3-1), r-cran-plogr (= 0.2.0-3build1), r-cran-plyr (= 1.8.8-1), r-cran-png (= 0.1-8-1), r-cran-prettyunits (= 1.1.1-2build1), r-cran-progress (= 1.2.2-2build1), r-cran-promises (= 1.2.0.1+dfsg-1), r-cran-purrr (= 1.0.1-1), r-cran-r6 (= 2.5.1-1), r-cran-rappdirs (= 0.3.3-1), r-cran-rcolorbrewer (= 1.1-3-1build1), r-cran-rcpp (= 1.0.11-1), r-cran-rcpparmadillo (= 0.12.6.1.0-1), r-cran-rcurl (= 1.98-1.12+dfsg-1), r-cran-readr (= 2.1.4-1), r-cran-reshape2 (= 1.4.4-2build1), r-cran-restfulr (= 0.0.15-1), r-cran-rjson (= 0.2.21-1), r-cran-rlang (= 1.1.1-1), r-cran-rmarkdown (= 2.23+dfsg-1), r-cran-rsqlite (= 2.3.1-1), r-cran-sass (= 0.4.7+dfsg-1), r-cran-scales (= 1.2.1-1), r-cran-shiny (= 1.7.4.1+dfsg-1), r-cran-snow (= 1:0.4.4-2), r-cran-sourcetools (= 0.1.7-1-1), r-cran-statmod (= 1.5.0-1), r-cran-stringi (= 1.7.12-1build1), r-cran-stringr (= 1.5.0-1), r-cran-survival (= 3.5-7-1), r-cran-sys (= 3.4.2-1), r-cran-tibble (= 3.2.1+dfsg-2), r-cran-tidyr (= 1.3.0-1), r-cran-tidyselect (= 1.2.0+dfsg-1), r-cran-tinytex (= 0.45-1), r-cran-tzdb (= 0.4.0-2), r-cran-utf8 (= 1.2.3-1), r-cran-vctrs (= 0.6.3-1), r-cran-venndiagram (= 1.7.3-1), r-cran-viridislite (= 0.4.2-2), r-cran-vroom (= 1.6.3-2), r-cran-withr (= 2.5.0-1), r-cran-xfun (= 0.39+dfsg-1), r-cran-xml (= 3.99-0.14-2), r-cran-xml2 (= 1.3.5-1), r-cran-xtable (= 1:1.8-4-2), r-cran-yaml (= 2.3.7-1), readline-common (= 8.2-1.3), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.9-1), sensible-utils (= 0.0.20), sysvinit-utils (= 3.07-1ubuntu1), tar (= 1.34+dfsg-1.2ubuntu1), tzdata (= 2023c-9ubuntu1), ucf (= 3.0043+nmu1), unzip (= 6.0-28ubuntu1), util-linux (= 2.38.1-5ubuntu2), util-linux-extra (= 2.38.1-5ubuntu2), x11-common (= 1:7.7+23ubuntu2), xauth (= 1:1.1.2-1), xdg-utils (= 1.1.3-4.1ubuntu3), xz-utils (= 5.4.1-0.2), zip (= 3.0-13), zlib1g (= 1:1.2.13.dfsg-1ubuntu5), zlib1g-dev (= 1:1.2.13.dfsg-1ubuntu5) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1692125747" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-bioc-isoformswitchanalyzer_2.0.1+ds-1_amd64.deb ------------------------------------------------- new Debian package, version 2.0. size 4106426 bytes: control archive=2552 bytes. 1510 bytes, 18 lines control 6405 bytes, 60 lines md5sums Package: r-bioc-isoformswitchanalyzer Version: 2.0.1+ds-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian R Packages Maintainers Installed-Size: 4708 Depends: r-api-4.0, r-api-bioc-3.17, r-bioc-limma, r-bioc-dexseq, r-bioc-saturn (>= 1.7.0), r-bioc-sva, r-cran-ggplot2 (>= 3.3.5), r-bioc-pfamanalyzer, r-bioc-bsgenome, r-cran-plyr, r-cran-reshape2, r-cran-gridextra, r-bioc-biostrings (>= 2.50.0), r-bioc-iranges, r-bioc-genomicranges, r-cran-rcolorbrewer, r-bioc-rtracklayer, r-cran-venndiagram, r-cran-dbi, r-bioc-genomeinfodb, r-bioc-tximport (>= 1.7.1), r-bioc-tximeta (>= 1.7.12), r-bioc-edger, r-cran-futile.logger, r-cran-stringr, r-cran-dplyr, r-cran-magrittr, r-cran-readr, r-cran-tibble, r-bioc-xvector, r-bioc-biocgenerics, r-cran-rcurl, r-bioc-biobase, r-bioc-summarizedexperiment, r-cran-tidyr, r-bioc-s4vectors, r-bioc-biocparallel Suggests: r-cran-knitr, r-cran-rmarkdown Section: gnu-r Priority: optional Homepage: https://bioconductor.org/packages/IsoformSwitchAnalyzeR/ Description: Identify, Annotate and Visualize Alternative Splicing and Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data. Analysis of alternative splicing and isoform switches with predicted functional consequences (e.g. gain/loss of protein domains etc.) from quantification of all types of RNASeq by tools such as Kallisto, Salmon, StringTie, Cufflinks/Cuffdiff etc. drwxr-xr-x root/root 0 2023-08-15 18:55 ./ drwxr-xr-x root/root 0 2023-08-15 18:55 ./usr/ drwxr-xr-x root/root 0 2023-08-15 18:55 ./usr/lib/ drwxr-xr-x root/root 0 2023-08-15 18:55 ./usr/lib/R/ drwxr-xr-x root/root 0 2023-08-15 18:55 ./usr/lib/R/site-library/ drwxr-xr-x root/root 0 2023-08-15 18:55 ./usr/lib/R/site-library/IsoformSwitchAnalyzeR/ -rw-r--r-- root/root 1090 2023-08-15 18:55 ./usr/lib/R/site-library/IsoformSwitchAnalyzeR/CITATION -rw-r--r-- root/root 2784 2023-08-15 18:55 ./usr/lib/R/site-library/IsoformSwitchAnalyzeR/DESCRIPTION -rw-r--r-- root/root 4776 2023-08-15 18:55 ./usr/lib/R/site-library/IsoformSwitchAnalyzeR/INDEX drwxr-xr-x root/root 0 2023-08-15 18:55 ./usr/lib/R/site-library/IsoformSwitchAnalyzeR/Meta/ -rw-r--r-- 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+------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 17056 Build-Time: 51 Distribution: mantic-proposed Host Architecture: amd64 Install-Time: 26 Job: r-bioc-isoformswitchanalyzer_2.0.1+ds-1.dsc Machine Architecture: amd64 Package: r-bioc-isoformswitchanalyzer Package-Time: 77 Source-Version: 2.0.1+ds-1 Space: 17056 Status: successful Version: 2.0.1+ds-1 -------------------------------------------------------------------------------- Finished at 2023-08-16T01:56:25Z Build needed 00:01:17, 17056k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=mantic --arch=amd64 PACKAGEBUILD-26510853 Scanning for processes to kill in build 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