https://launchpad.net/ubuntu/+source/r-bioc-rsubread/2.6.4-1/+build/22304863 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-044 4.15.0-163-generic #171-Ubuntu SMP Fri Nov 5 11:55:52 UTC 2021 aarch64 Buildd toolchain package versions: launchpad-buildd_204~508~ubuntu18.04.1 python3-lpbuildd_204~508~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.9 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 1 Dec 09:12:42 ntpdate[1653]: adjust time server 10.211.37.1 offset -0.001306 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=jammy --arch=armhf PACKAGEBUILD-22304863 --image-type chroot /home/buildd/filecache-default/c698bf6badd89264039f6cdfcd7c983f87611a3e Creating target for build PACKAGEBUILD-22304863 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=jammy --arch=armhf PACKAGEBUILD-22304863 Starting target for build PACKAGEBUILD-22304863 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=jammy --arch=armhf PACKAGEBUILD-22304863 'deb http://ftpmaster.internal/ubuntu jammy main universe' 'deb http://ftpmaster.internal/ubuntu jammy-security main universe' 'deb http://ftpmaster.internal/ubuntu jammy-updates main universe' 'deb http://ftpmaster.internal/ubuntu jammy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-22304863 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=jammy --arch=armhf PACKAGEBUILD-22304863 Updating target for build PACKAGEBUILD-22304863 Get:1 http://ftpmaster.internal/ubuntu jammy InRelease [270 kB] Get:2 http://ftpmaster.internal/ubuntu jammy-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed InRelease [121 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main armhf Packages [1351 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main Translation-en [511 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/universe armhf Packages [12.8 MB] Get:8 http://ftpmaster.internal/ubuntu jammy/universe Translation-en [5561 kB] Get:9 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf Packages [192 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main Translation-en [68.4 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/universe armhf Packages [1039 kB] Get:12 http://ftpmaster.internal/ubuntu jammy-proposed/universe Translation-en [489 kB] Fetched 22.6 MB in 10s (2322 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libsepol1 Use 'sudo apt autoremove' to remove it. The following packages will be REMOVED: libsemanage1* The following NEW packages will be installed: libsemanage2 libsepol2 libssl3 The following packages will be upgraded: apt base-files bash binutils binutils-arm-linux-gnueabihf binutils-common bsdutils ca-certificates cpp-11 dash debconf debianutils e2fsprogs g++-11 gcc-11 gcc-11-base gpg gpg-agent gpgconf gpgv grep libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libattr1 libbinutils libblkid1 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libext2fs2 libgcc-11-dev libgcc-s1 libgcrypt20 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libidn2-0 libip4tc2 libisl23 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 libmount1 libmpc3 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libseccomp2 libselinux1 libsemanage-common libsmartcols1 libsqlite3-0 libss2 libstdc++-11-dev libstdc++6 libtasn1-6 libtinfo6 libubsan1 libuuid1 libzstd1 linux-libc-dev lockfile-progs login logsave make mount ncurses-base ncurses-bin openssl passwd pkgbinarymangler sensible-utils tzdata usrmerge util-linux 89 upgraded, 3 newly installed, 1 to remove and 0 not upgraded. Need to get 61.8 MB of archives. After this operation, 338 MB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu jammy/main armhf debconf all 1.5.79 [126 kB] Get:2 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libpam0g armhf 1.4.0-10ubuntu1 [56.0 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libcrypt-dev armhf 1:4.4.26-1 [122 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libcrypt1 armhf 1:4.4.26-1 [94.1 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main armhf base-files armhf 12ubuntu2 [63.0 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main armhf debianutils armhf 5.5-1ubuntu1 [106 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/main armhf bash armhf 5.1-5ubuntu1 [655 kB] Get:8 http://ftpmaster.internal/ubuntu jammy/main armhf bsdutils armhf 1:2.37.2-4ubuntu1 [86.9 kB] Get:9 http://ftpmaster.internal/ubuntu jammy/main armhf dash armhf 0.5.11+git20210903+057cd650a4ed-3 [83.8 kB] Get:10 http://ftpmaster.internal/ubuntu jammy/main armhf grep armhf 3.7-1 [150 kB] Get:11 http://ftpmaster.internal/ubuntu jammy/main armhf login armhf 1:4.8.1-2ubuntu1 [186 kB] Get:12 http://ftpmaster.internal/ubuntu jammy/main armhf libncurses6 armhf 6.3-1 [87.5 kB] Get:13 http://ftpmaster.internal/ubuntu jammy/main armhf libncursesw6 armhf 6.3-1 [118 kB] Get:14 http://ftpmaster.internal/ubuntu jammy/main armhf libtinfo6 armhf 6.3-1 [88.2 kB] Get:15 http://ftpmaster.internal/ubuntu jammy/main armhf ncurses-bin armhf 6.3-1 [175 kB] Get:16 http://ftpmaster.internal/ubuntu jammy/main armhf libblkid1 armhf 2.37.2-4ubuntu1 [136 kB] Get:17 http://ftpmaster.internal/ubuntu jammy/main armhf libpcre2-8-0 armhf 10.39-3 [190 kB] Get:18 http://ftpmaster.internal/ubuntu jammy/main armhf libselinux1 armhf 3.3-1 [66.9 kB] Get:19 http://ftpmaster.internal/ubuntu jammy/main armhf libmount1 armhf 2.37.2-4ubuntu1 [151 kB] Get:20 http://ftpmaster.internal/ubuntu jammy/main armhf util-linux armhf 2.37.2-4ubuntu1 [1130 kB] Get:21 http://ftpmaster.internal/ubuntu jammy/main armhf ncurses-base all 6.3-1 [19.9 kB] Get:22 http://ftpmaster.internal/ubuntu jammy/main armhf libgpg-error0 armhf 1.42-3 [60.1 kB] Get:23 http://ftpmaster.internal/ubuntu jammy/main armhf libgcrypt20 armhf 1.9.4-3ubuntu2 [438 kB] Get:24 http://ftpmaster.internal/ubuntu jammy/main armhf libcc1-0 armhf 11.2.0-12ubuntu1 [45.8 kB] Get:25 http://ftpmaster.internal/ubuntu jammy/main armhf gcc-11-base armhf 11.2.0-12ubuntu1 [20.7 kB] Get:26 http://ftpmaster.internal/ubuntu jammy/main armhf libgcc-s1 armhf 11.2.0-12ubuntu1 [42.6 kB] Get:27 http://ftpmaster.internal/ubuntu jammy/main armhf libgomp1 armhf 11.2.0-12ubuntu1 [101 kB] Get:28 http://ftpmaster.internal/ubuntu jammy/main armhf libatomic1 armhf 11.2.0-12ubuntu1 [7624 B] Get:29 http://ftpmaster.internal/ubuntu jammy/main armhf libasan6 armhf 11.2.0-12ubuntu1 [2242 kB] Get:30 http://ftpmaster.internal/ubuntu jammy/main armhf libubsan1 armhf 11.2.0-12ubuntu1 [894 kB] Get:31 http://ftpmaster.internal/ubuntu jammy/main armhf g++-11 armhf 11.2.0-12ubuntu1 [9005 kB] Get:32 http://ftpmaster.internal/ubuntu jammy/main armhf libstdc++-11-dev armhf 11.2.0-12ubuntu1 [2180 kB] Get:33 http://ftpmaster.internal/ubuntu jammy/main armhf libgcc-11-dev armhf 11.2.0-12ubuntu1 [839 kB] Get:34 http://ftpmaster.internal/ubuntu jammy/main armhf gcc-11 armhf 11.2.0-12ubuntu1 [15.8 MB] Get:35 http://ftpmaster.internal/ubuntu jammy/main armhf cpp-11 armhf 11.2.0-12ubuntu1 [7833 kB] Get:36 http://ftpmaster.internal/ubuntu jammy/main armhf libstdc++6 armhf 11.2.0-12ubuntu1 [573 kB] Get:37 http://ftpmaster.internal/ubuntu jammy/main armhf libisl23 armhf 0.24-2 [581 kB] Get:38 http://ftpmaster.internal/ubuntu jammy/main armhf libmpc3 armhf 1.2.1-1 [39.5 kB] Get:39 http://ftpmaster.internal/ubuntu jammy/main armhf libzstd1 armhf 1.4.8+dfsg-3 [285 kB] Get:40 http://ftpmaster.internal/ubuntu jammy/main armhf libctf0 armhf 2.37-10ubuntu1 [93.7 kB] Get:41 http://ftpmaster.internal/ubuntu jammy/main armhf libctf-nobfd0 armhf 2.37-10ubuntu1 [93.8 kB] Get:42 http://ftpmaster.internal/ubuntu jammy/main armhf libbinutils armhf 2.37-10ubuntu1 [492 kB] Get:43 http://ftpmaster.internal/ubuntu jammy/main armhf binutils-common armhf 2.37-10ubuntu1 [213 kB] Get:44 http://ftpmaster.internal/ubuntu jammy/main armhf binutils armhf 2.37-10ubuntu1 [3174 B] Get:45 http://ftpmaster.internal/ubuntu jammy/main armhf binutils-arm-linux-gnueabihf armhf 2.37-10ubuntu1 [3057 kB] Get:46 http://ftpmaster.internal/ubuntu jammy/main armhf libapt-pkg6.0 armhf 2.3.13 [899 kB] Get:47 http://ftpmaster.internal/ubuntu jammy/main armhf gpgv armhf 2.2.27-2ubuntu1 [185 kB] Get:48 http://ftpmaster.internal/ubuntu jammy/main armhf libidn2-0 armhf 2.3.2-2 [67.8 kB] Get:49 http://ftpmaster.internal/ubuntu jammy/main armhf libp11-kit0 armhf 0.24.0-5 [218 kB] Get:50 http://ftpmaster.internal/ubuntu jammy/main armhf libtasn1-6 armhf 4.18.0-4 [36.3 kB] Get:51 http://ftpmaster.internal/ubuntu jammy/main armhf libgnutls30 armhf 3.7.2-2ubuntu1 [923 kB] Get:52 http://ftpmaster.internal/ubuntu jammy/main armhf libseccomp2 armhf 2.5.2-2ubuntu2 [47.7 kB] Get:53 http://ftpmaster.internal/ubuntu jammy/main armhf apt armhf 2.3.13 [1378 kB] Get:54 http://ftpmaster.internal/ubuntu jammy/main armhf libsepol2 armhf 3.3-1 [263 kB] Get:55 http://ftpmaster.internal/ubuntu jammy/main armhf libsemanage-common all 3.3-1 [10.1 kB] Get:56 http://ftpmaster.internal/ubuntu jammy/main armhf libsemanage2 armhf 3.3-1 [84.0 kB] Get:57 http://ftpmaster.internal/ubuntu jammy/main armhf passwd armhf 1:4.8.1-2ubuntu1 [740 kB] Get:58 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libpam-modules-bin armhf 1.4.0-10ubuntu1 [35.6 kB] Get:59 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libpam-modules armhf 1.4.0-10ubuntu1 [263 kB] Get:60 http://ftpmaster.internal/ubuntu jammy/main armhf logsave armhf 1.46.4-1ubuntu1 [10.3 kB] Get:61 http://ftpmaster.internal/ubuntu jammy/main armhf libext2fs2 armhf 1.46.4-1ubuntu1 [192 kB] Get:62 http://ftpmaster.internal/ubuntu jammy/main armhf e2fsprogs armhf 1.46.4-1ubuntu1 [565 kB] Get:63 http://ftpmaster.internal/ubuntu jammy/main armhf mount armhf 2.37.2-4ubuntu1 [125 kB] Get:64 http://ftpmaster.internal/ubuntu jammy/main armhf libattr1 armhf 1:2.5.1-1 [12.2 kB] Get:65 http://ftpmaster.internal/ubuntu jammy/main armhf libcom-err2 armhf 1.46.4-1ubuntu1 [9224 B] Get:66 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libssl3 armhf 3.0.0-1ubuntu1 [1575 kB] Get:67 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libk5crypto3 armhf 1.19.2-0ubuntu1 [83.6 kB] Get:68 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libkrb5support0 armhf 1.19.2-0ubuntu1 [30.5 kB] Get:69 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libkrb5-3 armhf 1.19.2-0ubuntu1 [330 kB] Get:70 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libgssapi-krb5-2 armhf 1.19.2-0ubuntu1 [120 kB] Get:71 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libpam-runtime all 1.4.0-10ubuntu1 [40.2 kB] Get:72 http://ftpmaster.internal/ubuntu jammy/main armhf libsmartcols1 armhf 2.37.2-4ubuntu1 [93.7 kB] Get:73 http://ftpmaster.internal/ubuntu jammy/main armhf libuuid1 armhf 2.37.2-4ubuntu1 [23.3 kB] Get:74 http://ftpmaster.internal/ubuntu jammy/main armhf libss2 armhf 1.46.4-1ubuntu1 [10.1 kB] Get:75 http://ftpmaster.internal/ubuntu jammy/main armhf sensible-utils all 0.0.17 [20.1 kB] Get:76 http://ftpmaster.internal/ubuntu jammy/main armhf usrmerge all 25ubuntu2 [54.7 kB] Get:77 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf openssl armhf 3.0.0-1ubuntu1 [1148 kB] Get:78 http://ftpmaster.internal/ubuntu jammy/main armhf ca-certificates all 20211016 [148 kB] Get:79 http://ftpmaster.internal/ubuntu jammy/main armhf libapparmor1 armhf 3.0.3-0ubuntu3 [32.2 kB] Get:80 http://ftpmaster.internal/ubuntu jammy/main armhf libip4tc2 armhf 1.8.7-1ubuntu4 [17.7 kB] Get:81 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libkmod2 armhf 28-1ubuntu5 [40.9 kB] Get:82 http://ftpmaster.internal/ubuntu jammy/main armhf libsqlite3-0 armhf 3.36.0-2 [571 kB] Get:83 http://ftpmaster.internal/ubuntu jammy/main armhf tzdata all 2021e-1ubuntu1 [343 kB] Get:84 http://ftpmaster.internal/ubuntu jammy/main armhf libgdbm6 armhf 1.22-1 [31.0 kB] Get:85 http://ftpmaster.internal/ubuntu jammy/main armhf gpg armhf 2.2.27-2ubuntu1 [483 kB] Get:86 http://ftpmaster.internal/ubuntu jammy/main armhf gpgconf armhf 2.2.27-2ubuntu1 [114 kB] Get:87 http://ftpmaster.internal/ubuntu jammy/main armhf gpg-agent armhf 2.2.27-2ubuntu1 [227 kB] Get:88 http://ftpmaster.internal/ubuntu jammy/main armhf libgdbm-compat4 armhf 1.22-1 [6076 B] Get:89 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf linux-libc-dev armhf 5.15.0-12.12 [1228 kB] Get:90 http://ftpmaster.internal/ubuntu jammy/main armhf lockfile-progs armhf 0.1.19 [9508 B] Get:91 http://ftpmaster.internal/ubuntu jammy/main armhf make armhf 4.3-4ubuntu2 [162 kB] Get:92 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Setting up libip4tc2:armhf (1.8.7-1ubuntu4) ... Setting up libapparmor1:armhf (3.0.3-0ubuntu3) ... Setting up libsqlite3-0:armhf (3.36.0-2) ... Setting up binutils-common:armhf (2.37-10ubuntu1) ... Setting up linux-libc-dev:armhf (5.15.0-12.12) ... Setting up libctf-nobfd0:armhf (2.37-10ubuntu1) ... Setting up libgomp1:armhf (11.2.0-12ubuntu1) ... Setting up libasan6:armhf (11.2.0-12ubuntu1) ... Setting up tzdata (2021e-1ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Dec 1 09:13:41 UTC 2021. Universal Time is now: Wed Dec 1 09:13:41 UTC 2021. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up make (4.3-4ubuntu2) ... Setting up libncurses6:armhf (6.3-1) ... Setting up libmpc3:armhf (1.2.1-1) ... Setting up lockfile-progs (0.1.19) ... Setting up libatomic1:armhf (11.2.0-12ubuntu1) ... Setting up usrmerge (25ubuntu2) ... Setting up libss2:armhf (1.46.4-1ubuntu1) ... Setting up libncursesw6:armhf (6.3-1) ... 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Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 7 added, 8 removed; done. Setting up libgdbm-compat4:armhf (1.22-1) ... Setting up libstdc++-11-dev:armhf (11.2.0-12ubuntu1) ... Setting up binutils-arm-linux-gnueabihf (2.37-10ubuntu1) ... Setting up binutils (2.37-10ubuntu1) ... Setting up gcc-11 (11.2.0-12ubuntu1) ... Setting up g++-11 (11.2.0-12ubuntu1) ... Processing triggers for libc-bin (2.34-0ubuntu3) ... Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-22304863 armhf jammy-proposed -c chroot:build-PACKAGEBUILD-22304863 --arch=armhf --dist=jammy-proposed --nolog r-bioc-rsubread_2.6.4-1.dsc Initiating build PACKAGEBUILD-22304863 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-163-generic #171-Ubuntu SMP Fri Nov 5 11:55:52 UTC 2021 armv7l sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-arm64-044.buildd +==============================================================================+ | r-bioc-rsubread 2.6.4-1 (armhf) Wed, 01 Dec 2021 09:13:52 +0000 | +==============================================================================+ Package: r-bioc-rsubread Version: 2.6.4-1 Source Version: 2.6.4-1 Distribution: jammy-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-22304863/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-bioc-rsubread_2.6.4-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/r-bioc-rsubread-t0Ovbj/r-bioc-rsubread-2.6.4' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-rsubread-t0Ovbj' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-eBTvtN/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-eBTvtN/apt_archive ./ InRelease Get:2 copy:/<>/resolver-eBTvtN/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-eBTvtN/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-eBTvtN/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-eBTvtN/apt_archive ./ Packages [433 B] Fetched 1739 B in 0s (53.8 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libsepol1 Use 'apt autoremove' to remove it. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 650 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-eBTvtN/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [650 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 650 B in 0s (47.9 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13176 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-matrix Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-matrix dpkg-deb: building package 'sbuild-build-depends-r-bioc-rsubread-dummy' in '/<>/resolver-eBTvtN/apt_archive/sbuild-build-depends-r-bioc-rsubread-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-rsubread-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-eBTvtN/apt_archive ./ InRelease Get:2 copy:/<>/resolver-eBTvtN/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-eBTvtN/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-eBTvtN/apt_archive ./ Sources [515 B] Get:5 copy:/<>/resolver-eBTvtN/apt_archive ./ Packages [595 B] Fetched 2073 B in 0s (60.6 kB/s) Reading package lists... Reading package lists... Install r-bioc-rsubread build dependencies (apt-based resolver) --------------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libsepol1 Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils dctrl-tools debhelper debugedit dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-11 groff-base icu-devtools intltool-debian libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdw1 libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-11-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu67 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libldap-2.5-0 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev librtmp1 libsasl2-2 libsasl2-modules-db libscalar-list-utils-perl libsigsegv2 libsm6 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp6 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db pkg-config po-debconf r-base-core r-base-dev r-cran-lattice r-cran-matrix ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc gfortran-11-doc libcoarrays-dev groff liblapack-doc icu-doc liblzma-doc ncurses-doc libscalar-number-perl readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk libbusiness-isbn-perl libwww-perl libcurl4-gnutls-dev m4-doc apparmor less www-browser libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo Recommended packages: devscripts cme git-buildpackage curl | wget | lynx bzip2-doc libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libclone-perl libldap-common libdevel-partialdump-perl libpng-tools publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl r-recommended r-doc-html libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils dctrl-tools debhelper debugedit dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-11 groff-base icu-devtools intltool-debian libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdw1 libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-11-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu67 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libldap-2.5-0 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev librtmp1 libsasl2-2 libsasl2-modules-db libscalar-list-utils-perl libsigsegv2 libsm6 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp6 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db pkg-config po-debconf r-base-core r-base-dev r-cran-lattice r-cran-matrix sbuild-build-depends-r-bioc-rsubread-dummy ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 173 newly installed, 0 to remove and 0 not upgraded. Need to get 86.3 MB of archives. After this operation, 227 MB of additional disk space will be used. Get:1 copy:/<>/resolver-eBTvtN/apt_archive ./ sbuild-build-depends-r-bioc-rsubread-dummy 0.invalid.0 [684 B] Get:2 http://ftpmaster.internal/ubuntu jammy/main armhf bsdextrautils armhf 2.37.2-4ubuntu1 [77.1 kB] Get:3 http://ftpmaster.internal/ubuntu jammy/main armhf libuchardet0 armhf 0.0.7-1build1 [75.6 kB] Get:4 http://ftpmaster.internal/ubuntu jammy/main armhf groff-base armhf 1.22.4-7 [870 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main armhf libpipeline1 armhf 1.5.4-1 [25.2 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main armhf man-db armhf 2.9.4-2build1 [1143 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/main armhf libmd0 armhf 1.0.4-1 [22.5 kB] Get:8 http://ftpmaster.internal/ubuntu jammy/main armhf libbsd0 armhf 0.11.3-1ubuntu3 [39.6 kB] Get:9 http://ftpmaster.internal/ubuntu jammy/main armhf libelf1 armhf 0.186-1 [43.2 kB] Get:10 http://ftpmaster.internal/ubuntu jammy/main armhf libexpat1 armhf 2.4.1-3 [64.9 kB] Get:11 http://ftpmaster.internal/ubuntu jammy/main armhf libfribidi0 armhf 1.0.8-2ubuntu2 [23.5 kB] Get:12 http://ftpmaster.internal/ubuntu jammy/main armhf libglib2.0-0 armhf 2.70.1-1 [1300 kB] Get:13 http://ftpmaster.internal/ubuntu jammy/main armhf libicu67 armhf 67.1-7ubuntu1 [9788 kB] Get:14 http://ftpmaster.internal/ubuntu jammy/main armhf libxml2 armhf 2.9.12+dfsg-5 [598 kB] Get:15 http://ftpmaster.internal/ubuntu jammy/main armhf ucf all 3.0043 [56.1 kB] Get:16 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libmagic-mgc armhf 1:5.41-2 [257 kB] Get:17 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libmagic1 armhf 1:5.41-2 [80.2 kB] Get:18 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf file armhf 1:5.41-2 [20.6 kB] Get:19 http://ftpmaster.internal/ubuntu jammy/main armhf gettext-base armhf 0.21-4ubuntu3 [36.0 kB] Get:20 http://ftpmaster.internal/ubuntu jammy/main armhf libpsl5 armhf 0.21.0-1.2build1 [56.1 kB] Get:21 http://ftpmaster.internal/ubuntu jammy/main armhf libxau6 armhf 1:1.0.9-1build4 [6628 B] Get:22 http://ftpmaster.internal/ubuntu jammy/main armhf libxdmcp6 armhf 1:1.1.3-0ubuntu4 [9552 B] Get:23 http://ftpmaster.internal/ubuntu jammy/main armhf libxcb1 armhf 1.14-3ubuntu2 [46.2 kB] Get:24 http://ftpmaster.internal/ubuntu jammy/main armhf libx11-data all 2:1.7.2-2 [123 kB] Get:25 http://ftpmaster.internal/ubuntu jammy/main armhf libx11-6 armhf 2:1.7.2-2 [601 kB] Get:26 http://ftpmaster.internal/ubuntu jammy/main armhf libxext6 armhf 2:1.3.4-1 [26.4 kB] Get:27 http://ftpmaster.internal/ubuntu jammy/main armhf libxmuu1 armhf 2:1.1.3-0ubuntu2 [9270 B] Get:28 http://ftpmaster.internal/ubuntu jammy/main armhf xauth armhf 1:1.1-1build1 [23.9 kB] Get:29 http://ftpmaster.internal/ubuntu jammy/main armhf libsigsegv2 armhf 2.13-1ubuntu2 [13.7 kB] Get:30 http://ftpmaster.internal/ubuntu jammy/main armhf m4 armhf 1.4.18-5ubuntu1 [192 kB] Get:31 http://ftpmaster.internal/ubuntu jammy/main armhf autoconf all 2.71-2 [338 kB] Get:32 http://ftpmaster.internal/ubuntu jammy/main armhf autotools-dev all 20180224.1+nmu1 [39.4 kB] Get:33 http://ftpmaster.internal/ubuntu jammy/main armhf automake all 1:1.16.5-1.1 [558 kB] Get:34 http://ftpmaster.internal/ubuntu jammy/main armhf autopoint all 0.21-4ubuntu3 [422 kB] Get:35 http://ftpmaster.internal/ubuntu jammy/main armhf dctrl-tools armhf 2.24-3build1 [57.4 kB] Get:36 http://ftpmaster.internal/ubuntu jammy/main armhf libdebhelper-perl all 13.5.2ubuntu1 [66.0 kB] Get:37 http://ftpmaster.internal/ubuntu jammy/main armhf libtool all 2.4.6-15build1 [164 kB] Get:38 http://ftpmaster.internal/ubuntu jammy/main armhf dh-autoreconf all 20 [16.1 kB] Get:39 http://ftpmaster.internal/ubuntu jammy/main armhf libarchive-zip-perl all 1.68-1 [90.2 kB] Get:40 http://ftpmaster.internal/ubuntu jammy/main armhf libsub-override-perl all 0.09-2 [9532 B] Get:41 http://ftpmaster.internal/ubuntu jammy/main armhf libfile-stripnondeterminism-perl all 1.12.1-1 [18.1 kB] Get:42 http://ftpmaster.internal/ubuntu jammy/main armhf dh-strip-nondeterminism all 1.12.1-1 [5200 B] Get:43 http://ftpmaster.internal/ubuntu jammy/main armhf libdw1 armhf 0.186-1 [228 kB] Get:44 http://ftpmaster.internal/ubuntu jammy/main armhf debugedit armhf 1:5.0-3 [43.2 kB] Get:45 http://ftpmaster.internal/ubuntu jammy/main armhf dwz armhf 0.14-1build1 [99.2 kB] Get:46 http://ftpmaster.internal/ubuntu jammy/main armhf gettext armhf 0.21-4ubuntu3 [755 kB] Get:47 http://ftpmaster.internal/ubuntu jammy/main armhf intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:48 http://ftpmaster.internal/ubuntu jammy/main armhf po-debconf all 1.0.21+nmu1 [233 kB] Get:49 http://ftpmaster.internal/ubuntu jammy/main armhf debhelper all 13.5.2ubuntu1 [926 kB] Get:50 http://ftpmaster.internal/ubuntu jammy/main armhf zip armhf 3.0-12build1 [166 kB] Get:51 http://ftpmaster.internal/ubuntu jammy/main armhf unzip armhf 6.0-26ubuntu2 [162 kB] Get:52 http://ftpmaster.internal/ubuntu jammy/main armhf libpaper1 armhf 1.1.28build1 [12.9 kB] Get:53 http://ftpmaster.internal/ubuntu jammy/main armhf libpaper-utils armhf 1.1.28build1 [8238 B] Get:54 http://ftpmaster.internal/ubuntu jammy/main armhf xdg-utils all 1.1.3-4.1ubuntu1 [62.2 kB] Get:55 http://ftpmaster.internal/ubuntu jammy/main armhf libblas3 armhf 3.9.0-3ubuntu3 [113 kB] Get:56 http://ftpmaster.internal/ubuntu jammy/main armhf libbrotli1 armhf 1.0.9-2build4 [306 kB] Get:57 http://ftpmaster.internal/ubuntu jammy/main armhf libfreetype6 armhf 2.11.0+dfsg-1 [323 kB] Get:58 http://ftpmaster.internal/ubuntu jammy/main armhf fonts-dejavu-core all 2.37-2build1 [1041 kB] Get:59 http://ftpmaster.internal/ubuntu jammy/main armhf fontconfig-config all 2.13.1-4.2ubuntu4 [29.1 kB] Get:60 http://ftpmaster.internal/ubuntu jammy/main armhf libfontconfig1 armhf 2.13.1-4.2ubuntu4 [109 kB] Get:61 http://ftpmaster.internal/ubuntu jammy/main armhf libpixman-1-0 armhf 0.40.0-1build3 [177 kB] Get:62 http://ftpmaster.internal/ubuntu jammy/main armhf libxcb-render0 armhf 1.14-3ubuntu2 [15.3 kB] Get:63 http://ftpmaster.internal/ubuntu jammy/main armhf libxcb-shm0 armhf 1.14-3ubuntu2 [5818 B] Get:64 http://ftpmaster.internal/ubuntu jammy/main armhf libxrender1 armhf 1:0.9.10-1build3 [16.3 kB] Get:65 http://ftpmaster.internal/ubuntu jammy/main armhf libcairo2 armhf 1.16.0-5ubuntu2 [549 kB] Get:66 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libsasl2-modules-db armhf 2.1.27+dfsg2-2build1 [19.1 kB] Get:67 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libsasl2-2 armhf 2.1.27+dfsg2-2build1 [50.7 kB] Get:68 http://ftpmaster.internal/ubuntu jammy/main armhf libldap-2.5-0 armhf 2.5.6+dfsg-1~exp1ubuntu1 [162 kB] Get:69 http://ftpmaster.internal/ubuntu jammy/main armhf libnghttp2-14 armhf 1.43.0-1build1 [70.0 kB] Get:70 http://ftpmaster.internal/ubuntu jammy/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2build3 [53.0 kB] Get:71 http://ftpmaster.internal/ubuntu jammy/main armhf libssh-4 armhf 0.9.6-1 [163 kB] Get:72 http://ftpmaster.internal/ubuntu jammy/main armhf libcurl4 armhf 7.74.0-1.3ubuntu2 [238 kB] Get:73 http://ftpmaster.internal/ubuntu jammy/main armhf libjpeg-turbo8 armhf 2.1.1-0ubuntu1 [116 kB] Get:74 http://ftpmaster.internal/ubuntu jammy/main armhf libjpeg8 armhf 8c-2ubuntu8 [2202 B] Get:75 http://ftpmaster.internal/ubuntu jammy/main armhf libgfortran5 armhf 11.2.0-12ubuntu1 [287 kB] Get:76 http://ftpmaster.internal/ubuntu jammy/main armhf liblapack3 armhf 3.9.0-3ubuntu3 [1891 kB] Get:77 http://ftpmaster.internal/ubuntu jammy/main armhf fontconfig armhf 2.13.1-4.2ubuntu4 [182 kB] Get:78 http://ftpmaster.internal/ubuntu jammy/main armhf libgraphite2-3 armhf 1.3.14-1build1 [65.2 kB] Get:79 http://ftpmaster.internal/ubuntu jammy/main armhf libharfbuzz0b armhf 2.7.4-1ubuntu2 [335 kB] Get:80 http://ftpmaster.internal/ubuntu jammy/main armhf libthai-data all 0.1.28-4.1 [159 kB] Get:81 http://ftpmaster.internal/ubuntu jammy/main armhf libdatrie1 armhf 0.2.13-1ubuntu3 [16.4 kB] Get:82 http://ftpmaster.internal/ubuntu jammy/main armhf libthai0 armhf 0.1.28-4.1 [15.8 kB] Get:83 http://ftpmaster.internal/ubuntu jammy/main armhf libpango-1.0-0 armhf 1.48.10+ds1-1 [176 kB] Get:84 http://ftpmaster.internal/ubuntu jammy/main armhf libpangoft2-1.0-0 armhf 1.48.10+ds1-1 [44.4 kB] Get:85 http://ftpmaster.internal/ubuntu jammy/main armhf libpangocairo-1.0-0 armhf 1.48.10+ds1-1 [33.0 kB] Get:86 http://ftpmaster.internal/ubuntu jammy/main armhf libtcl8.6 armhf 8.6.12+dfsg-1 [912 kB] Get:87 http://ftpmaster.internal/ubuntu jammy/main armhf libdeflate0 armhf 1.8-1ubuntu1 [46.1 kB] Get:88 http://ftpmaster.internal/ubuntu jammy/main armhf libjbig0 armhf 2.1-3.1build2 [25.1 kB] Get:89 http://ftpmaster.internal/ubuntu jammy/main armhf libwebp6 armhf 0.6.1-2.1build1 [163 kB] Get:90 http://ftpmaster.internal/ubuntu jammy/main armhf libtiff5 armhf 4.3.0-2 [165 kB] Get:91 http://ftpmaster.internal/ubuntu jammy/main armhf libxft2 armhf 2.3.3-0ubuntu4 [34.8 kB] Get:92 http://ftpmaster.internal/ubuntu jammy/main armhf x11-common all 1:7.7+23ubuntu1 [23.5 kB] Get:93 http://ftpmaster.internal/ubuntu jammy/main armhf libxss1 armhf 1:1.2.3-1build1 [7662 B] Get:94 http://ftpmaster.internal/ubuntu jammy/main armhf libtk8.6 armhf 8.6.12-1 [689 kB] Get:95 http://ftpmaster.internal/ubuntu jammy/main armhf libice6 armhf 2:1.0.10-1build1 [36.4 kB] Get:96 http://ftpmaster.internal/ubuntu jammy/main armhf libsm6 armhf 2:1.2.3-1build1 [15.3 kB] Get:97 http://ftpmaster.internal/ubuntu jammy/main armhf libxt6 armhf 1:1.2.0-1build1 [148 kB] Get:98 http://ftpmaster.internal/ubuntu jammy/universe armhf r-base-core armhf 4.1.2-1ubuntu1 [25.6 MB] Get:99 http://ftpmaster.internal/ubuntu jammy/main armhf libgfortran-11-dev armhf 11.2.0-12ubuntu1 [342 kB] Get:100 http://ftpmaster.internal/ubuntu jammy/main armhf gfortran-11 armhf 11.2.0-12ubuntu1 [8395 kB] Get:101 http://ftpmaster.internal/ubuntu jammy/main armhf gfortran armhf 4:11.2.0-1ubuntu1 [1172 B] Get:102 http://ftpmaster.internal/ubuntu jammy/main armhf libblas-dev armhf 3.9.0-3ubuntu3 [120 kB] Get:103 http://ftpmaster.internal/ubuntu jammy/main armhf liblapack-dev armhf 3.9.0-3ubuntu3 [1960 kB] Get:104 http://ftpmaster.internal/ubuntu jammy/main armhf libncurses-dev armhf 6.3-1 [342 kB] Get:105 http://ftpmaster.internal/ubuntu jammy/main armhf libncurses5-dev armhf 6.3-1 [780 B] Get:106 http://ftpmaster.internal/ubuntu jammy/main armhf libreadline-dev armhf 8.1-2build1 [151 kB] Get:107 http://ftpmaster.internal/ubuntu jammy/main armhf libjpeg-turbo8-dev armhf 2.1.1-0ubuntu1 [231 kB] Get:108 http://ftpmaster.internal/ubuntu jammy/main armhf libjpeg8-dev armhf 8c-2ubuntu8 [1554 B] Get:109 http://ftpmaster.internal/ubuntu jammy/main armhf libjpeg-dev armhf 8c-2ubuntu8 [1554 B] Get:110 http://ftpmaster.internal/ubuntu jammy/main armhf libpcre2-16-0 armhf 10.39-3 [173 kB] Get:111 http://ftpmaster.internal/ubuntu jammy/main armhf libpcre2-32-0 armhf 10.39-3 [163 kB] Get:112 http://ftpmaster.internal/ubuntu jammy/main armhf libpcre2-posix3 armhf 10.39-3 [5544 B] Get:113 http://ftpmaster.internal/ubuntu jammy/main armhf libpcre2-dev armhf 10.39-3 [645 kB] Get:114 http://ftpmaster.internal/ubuntu jammy/main armhf libpcre16-3 armhf 2:8.39-13build4 [143 kB] Get:115 http://ftpmaster.internal/ubuntu jammy/main armhf libpcre32-3 armhf 2:8.39-13build4 [135 kB] Get:116 http://ftpmaster.internal/ubuntu jammy/main armhf libpcrecpp0v5 armhf 2:8.39-13build4 [14.0 kB] Get:117 http://ftpmaster.internal/ubuntu jammy/main armhf libpcre3-dev armhf 2:8.39-13build4 [514 kB] Get:118 http://ftpmaster.internal/ubuntu jammy/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2ubuntu7 [157 kB] Get:119 http://ftpmaster.internal/ubuntu jammy/main armhf libpng-dev armhf 1.6.37-3build4 [176 kB] Get:120 http://ftpmaster.internal/ubuntu jammy/main armhf libbz2-dev armhf 1.0.8-4ubuntu4 [29.8 kB] Get:121 http://ftpmaster.internal/ubuntu jammy/main armhf liblzma-dev armhf 5.2.5-2build1 [149 kB] Get:122 http://ftpmaster.internal/ubuntu jammy/main armhf icu-devtools armhf 67.1-7ubuntu1 [183 kB] Get:123 http://ftpmaster.internal/ubuntu jammy/main armhf libicu-dev armhf 67.1-7ubuntu1 [10.8 MB] Get:124 http://ftpmaster.internal/ubuntu jammy/main armhf pkg-config armhf 0.29.2-1ubuntu2 [46.0 kB] Get:125 http://ftpmaster.internal/ubuntu jammy/universe armhf r-base-dev all 4.1.2-1ubuntu1 [4306 B] Get:126 http://ftpmaster.internal/ubuntu jammy/main armhf libfile-which-perl all 1.23-1 [13.8 kB] Get:127 http://ftpmaster.internal/ubuntu jammy/universe armhf libswitch-perl all 2.17-2.1 [18.3 kB] Get:128 http://ftpmaster.internal/ubuntu jammy/main armhf libencode-locale-perl all 1.05-1.1 [11.8 kB] Get:129 http://ftpmaster.internal/ubuntu jammy/main armhf libtimedate-perl all 2.3300-2 [34.0 kB] Get:130 http://ftpmaster.internal/ubuntu jammy/main armhf libhttp-date-perl all 6.05-1 [9920 B] Get:131 http://ftpmaster.internal/ubuntu jammy/main armhf libio-html-perl all 1.004-2 [15.4 kB] Get:132 http://ftpmaster.internal/ubuntu jammy/main armhf liblwp-mediatypes-perl all 6.04-1 [19.5 kB] Get:133 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf liburi-perl all 5.10-1 [78.8 kB] Get:134 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libhttp-message-perl all 6.35-1 [77.0 kB] Get:135 http://ftpmaster.internal/ubuntu jammy/main armhf libparams-util-perl armhf 1.102-1build2 [21.5 kB] Get:136 http://ftpmaster.internal/ubuntu jammy/main armhf libsub-install-perl all 0.928-1.1 [9972 B] Get:137 http://ftpmaster.internal/ubuntu jammy/main armhf libdata-optlist-perl all 0.112-1 [11.0 kB] Get:138 http://ftpmaster.internal/ubuntu jammy/main armhf libb-hooks-op-check-perl armhf 0.22-1build4 [10.2 kB] Get:139 http://ftpmaster.internal/ubuntu jammy/main armhf libdynaloader-functions-perl all 0.003-1.1 [12.1 kB] Get:140 http://ftpmaster.internal/ubuntu jammy/main armhf libdevel-callchecker-perl armhf 0.008-1ubuntu3 [14.6 kB] Get:141 http://ftpmaster.internal/ubuntu jammy/main armhf libparams-classify-perl armhf 0.015-1build4 [20.5 kB] Get:142 http://ftpmaster.internal/ubuntu jammy/main armhf libmodule-runtime-perl all 0.016-1 [16.2 kB] Get:143 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libtry-tiny-perl all 0.31-1 [21.8 kB] Get:144 http://ftpmaster.internal/ubuntu jammy/main armhf libmodule-implementation-perl all 0.09-1.1 [11.6 kB] Get:145 http://ftpmaster.internal/ubuntu jammy/universe armhf libscalar-list-utils-perl armhf 1:1.59-1 [54.7 kB] Get:146 http://ftpmaster.internal/ubuntu jammy/main armhf libpackage-stash-perl all 0.39-1 [19.1 kB] Get:147 http://ftpmaster.internal/ubuntu jammy/universe armhf libclass-load-perl all 0.25-1 [13.5 kB] Get:148 http://ftpmaster.internal/ubuntu jammy/universe armhf libclass-load-xs-perl armhf 0.10-1build6 [13.0 kB] Get:149 http://ftpmaster.internal/ubuntu jammy/main armhf libsub-exporter-progressive-perl all 0.001013-1 [6784 B] Get:150 http://ftpmaster.internal/ubuntu jammy/universe armhf libdevel-globaldestruction-perl all 0.14-1.1 [6916 B] Get:151 http://ftpmaster.internal/ubuntu jammy/universe armhf libalgorithm-c3-perl all 0.11-1 [11.0 kB] Get:152 http://ftpmaster.internal/ubuntu jammy/universe armhf libclass-c3-perl all 0.35-1 [19.0 kB] Get:153 http://ftpmaster.internal/ubuntu jammy/universe armhf libmro-compat-perl all 0.13-1 [11.2 kB] Get:154 http://ftpmaster.internal/ubuntu jammy/universe armhf libdevel-overloadinfo-perl all 0.007-1 [7422 B] Get:155 http://ftpmaster.internal/ubuntu jammy/main armhf libdevel-stacktrace-perl all 2.0400-1 [22.7 kB] Get:156 http://ftpmaster.internal/ubuntu jammy/main armhf libsub-exporter-perl all 0.988-1 [50.6 kB] Get:157 http://ftpmaster.internal/ubuntu jammy/universe armhf libeval-closure-perl all 0.14-1 [10.3 kB] Get:158 http://ftpmaster.internal/ubuntu jammy/universe armhf libdist-checkconflicts-perl all 0.11-1.1 [9632 B] Get:159 http://ftpmaster.internal/ubuntu jammy/universe armhf libmodule-runtime-conflicts-perl all 0.003-1.1 [6836 B] Get:160 http://ftpmaster.internal/ubuntu jammy/main armhf libsub-name-perl armhf 0.26-1build2 [11.0 kB] Get:161 http://ftpmaster.internal/ubuntu jammy/universe armhf libpackage-deprecationmanager-perl all 0.17-1.1 [15.5 kB] Get:162 http://ftpmaster.internal/ubuntu jammy/main armhf libpackage-stash-xs-perl armhf 0.29-1build4 [17.7 kB] Get:163 http://ftpmaster.internal/ubuntu jammy/universe armhf libmoose-perl armhf 2.2200-1 [749 kB] Get:164 http://ftpmaster.internal/ubuntu jammy/main armhf libvariable-magic-perl armhf 0.62-1build4 [33.0 kB] Get:165 http://ftpmaster.internal/ubuntu jammy/main armhf libb-hooks-endofscope-perl all 0.25-1 [17.8 kB] Get:166 http://ftpmaster.internal/ubuntu jammy/main armhf libsub-identify-perl armhf 0.14-1build4 [10.2 kB] Get:167 http://ftpmaster.internal/ubuntu jammy/main armhf libnamespace-clean-perl all 0.27-1 [13.6 kB] Get:168 http://ftpmaster.internal/ubuntu jammy/main armhf libcurl3-gnutls armhf 7.74.0-1.3ubuntu2 [234 kB] Get:169 http://ftpmaster.internal/ubuntu jammy/universe armhf libwww-curl-perl armhf 4.17-7build1 [49.7 kB] Get:170 http://ftpmaster.internal/ubuntu jammy/universe armhf libwww-curl-simple-perl all 0.100191-2 [10.9 kB] Get:171 http://ftpmaster.internal/ubuntu jammy/universe armhf dh-r all 20210218ubuntu1 [36.4 kB] Get:172 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-lattice armhf 0.20-45-1 [1130 kB] Get:173 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-matrix armhf 1.3-4-2 [3574 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 86.3 MB in 5s (18.7 MB/s) Selecting previously unselected package bsdextrautils. 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Unpacking sbuild-build-depends-r-bioc-rsubread-dummy (0.invalid.0) ... Setting up libexpat1:armhf (2.4.1-3) ... Setting up libpcrecpp0v5:armhf (2:8.39-13build4) ... Setting up libpipeline1:armhf (1.5.4-1) ... Setting up libgraphite2-3:armhf (1.3.14-1build1) ... Setting up libpixman-1-0:armhf (0.40.0-1build3) ... Setting up libfile-which-perl (1.23-1) ... Setting up libxau6:armhf (1:1.0.9-1build4) ... Setting up libncurses-dev:armhf (6.3-1) ... Setting up libpsl5:armhf (0.21.0-1.2build1) ... Setting up bsdextrautils (2.37.2-4ubuntu1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libpcre16-3:armhf (2:8.39-13build4) ... Setting up libicu67:armhf (67.1-7ubuntu1) ... Setting up libdynaloader-functions-perl (0.003-1.1) ... Setting up libdatrie1:armhf (0.2.13-1ubuntu3) ... Setting up libmagic-mgc (1:5.41-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libsub-identify-perl (0.14-1build4) ... Setting up libglib2.0-0:armhf (2.70.1-1) ... No schema files found: doing nothing. Setting up libscalar-list-utils-perl (1:1.59-1) ... Setting up unzip (6.0-26ubuntu2) ... Setting up libdebhelper-perl (13.5.2ubuntu1) ... Setting up libbrotli1:armhf (1.0.9-2build4) ... Setting up liblwp-mediatypes-perl (6.04-1) ... Setting up x11-common (1:7.7+23ubuntu1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libtry-tiny-perl (0.31-1) ... Setting up libnghttp2-14:armhf (1.43.0-1build1) ... Setting up libmagic1:armhf (1:5.41-2) ... Setting up libdeflate0:armhf (1.8-1ubuntu1) ... Setting up gettext-base (0.21-4ubuntu3) ... Setting up libencode-locale-perl (1.05-1.1) ... Setting up file (1:5.41-2) ... Setting up libreadline-dev:armhf (8.1-2build1) ... Setting up libjbig0:armhf (2.1-3.1build2) ... Setting up libpcre2-16-0:armhf (10.39-3) ... Setting up libsub-install-perl (0.928-1.1) ... Setting up libsasl2-modules-db:armhf (2.1.27+dfsg2-2build1) ... Setting up zip (3.0-12build1) ... Setting up libpackage-stash-xs-perl (0.29-1build4) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libpcre2-32-0:armhf (10.39-3) ... Setting up libblas3:armhf (3.9.0-3ubuntu3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libalgorithm-c3-perl (0.11-1) ... Setting up libswitch-perl (2.17-2.1) ... Setting up libfreetype6:armhf (2.11.0+dfsg-1) ... Setting up libx11-data (2:1.7.2-2) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2build3) ... Setting up libsigsegv2:armhf (2.13-1ubuntu2) ... Setting up libfribidi0:armhf (1.0.8-2ubuntu2) ... Setting up libpcre32-3:armhf (2:8.39-13build4) ... Setting up libvariable-magic-perl (0.62-1build4) ... Setting up libio-html-perl (1.004-2) ... Setting up libtcl8.6:armhf (8.6.12+dfsg-1) ... Setting up autopoint (0.21-4ubuntu3) ... Setting up libwebp6:armhf (0.6.1-2.1build1) ... Setting up libb-hooks-op-check-perl (0.22-1build4) ... Setting up icu-devtools (67.1-7ubuntu1) ... Setting up pkg-config (0.29.2-1ubuntu2) ... Setting up fonts-dejavu-core (2.37-2build1) ... Setting up ucf (3.0043) ... Setting up libjpeg-turbo8:armhf (2.1.1-0ubuntu1) ... Setting up libparams-util-perl (1.102-1build2) ... Setting up libsasl2-2:armhf (2.1.27+dfsg2-2build1) ... Setting up libssh-4:armhf (0.9.6-1) ... Setting up libgfortran5:armhf (11.2.0-12ubuntu1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up liblzma-dev:armhf (5.2.5-2build1) ... Setting up libsub-name-perl (0.26-1build2) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2ubuntu7) ... Setting up libpcre2-posix3:armhf (10.39-3) ... Setting up libmd0:armhf (1.0.4-1) ... Setting up libuchardet0:armhf (0.0.7-1build1) ... Setting up libncurses5-dev:armhf (6.3-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libharfbuzz0b:armhf (2.7.4-1ubuntu2) ... Setting up libthai-data (0.1.28-4.1) ... Setting up libdevel-globaldestruction-perl (0.14-1.1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libbsd0:armhf (0.11.3-1ubuntu3) ... Setting up libelf1:armhf (0.186-1) ... Setting up libicu-dev:armhf (67.1-7ubuntu1) ... Setting up libxml2:armhf (2.9.12+dfsg-5) ... Setting up xdg-utils (1.1.3-4.1ubuntu1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up liburi-perl (5.10-1) ... Setting up libblas-dev:armhf (3.9.0-3ubuntu3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode Setting up dctrl-tools (2.24-3build1) ... Setting up libbz2-dev:armhf (1.0.8-4ubuntu4) ... Setting up libjpeg8:armhf (8c-2ubuntu8) ... Setting up libfile-stripnondeterminism-perl (1.12.1-1) ... Setting up libpaper1:armhf (1.1.28build1) ... Creating config file /etc/papersize with new version Setting up libice6:armhf (2:1.0.10-1build1) ... Setting up libhttp-date-perl (6.05-1) ... Setting up libdw1:armhf (0.186-1) ... Setting up libjpeg-turbo8-dev:armhf (2.1.1-0ubuntu1) ... Setting up libxdmcp6:armhf (1:1.1.3-0ubuntu4) ... Setting up liblapack3:armhf (3.9.0-3ubuntu3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libxcb1:armhf (1.14-3ubuntu2) ... Setting up gettext (0.21-4ubuntu3) ... Setting up libpcre2-dev:armhf (10.39-3) ... Setting up libtool (2.4.6-15build1) ... Setting up libxcb-render0:armhf (1.14-3ubuntu2) ... Setting up libpcre3-dev:armhf (2:8.39-13build4) ... Setting up libgfortran-11-dev:armhf (11.2.0-12ubuntu1) ... Setting up fontconfig-config (2.13.1-4.2ubuntu4) ... Setting up libpng-dev:armhf (1.6.37-3build4) ... Setting up m4 (1.4.18-5ubuntu1) ... Setting up libxcb-shm0:armhf (1.14-3ubuntu2) ... Setting up libpaper-utils (1.1.28build1) ... Setting up libclass-c3-perl (0.35-1) ... Setting up libdevel-callchecker-perl (0.008-1ubuntu3) ... Setting up libldap-2.5-0:armhf (2.5.6+dfsg-1~exp1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libthai0:armhf (0.1.28-4.1) ... Setting up liblapack-dev:armhf (3.9.0-3ubuntu3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode Setting up libdata-optlist-perl (0.112-1) ... Setting up gfortran-11 (11.2.0-12ubuntu1) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.12.1-1) ... Setting up dwz (0.14-1build1) ... Setting up groff-base (1.22.4-7) ... Setting up debugedit (1:5.0-3) ... Setting up libcurl4:armhf (7.74.0-1.3ubuntu2) ... Setting up libx11-6:armhf (2:1.7.2-2) ... Setting up libtiff5:armhf (4.3.0-2) ... Setting up libfontconfig1:armhf (2.13.1-4.2ubuntu4) ... Setting up libmro-compat-perl (0.13-1) ... Setting up libjpeg8-dev:armhf (8c-2ubuntu8) ... Setting up libsm6:armhf (2:1.2.3-1build1) ... Setting up libxmuu1:armhf (2:1.1.3-0ubuntu2) ... Setting up libsub-exporter-perl (0.988-1) ... Setting up libhttp-message-perl (6.35-1) ... Setting up libeval-closure-perl (0.14-1) ... Setting up automake (1:1.16.5-1.1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up fontconfig (2.13.1-4.2ubuntu4) ... Regenerating fonts cache... done. Setting up libxrender1:armhf (1:0.9.10-1build3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libparams-classify-perl (0.015-1build4) ... Setting up libpango-1.0-0:armhf (1.48.10+ds1-1) ... Setting up libjpeg-dev:armhf (8c-2ubuntu8) ... Setting up libxext6:armhf (2:1.3.4-1) ... Setting up libcurl3-gnutls:armhf (7.74.0-1.3ubuntu2) ... Setting up man-db (2.9.4-2build1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up gfortran (4:11.2.0-1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:armhf (1.16.0-5ubuntu2) ... Setting up dh-autoreconf (20) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libdist-checkconflicts-perl (0.11-1.1) ... Setting up libxt6:armhf (1:1.2.0-1build1) ... Setting up xauth (1:1.1-1build1) ... Setting up libxss1:armhf (1:1.2.3-1build1) ... Setting up libpangoft2-1.0-0:armhf (1.48.10+ds1-1) ... Setting up libpangocairo-1.0-0:armhf (1.48.10+ds1-1) ... Setting up libxft2:armhf (2.3.3-0ubuntu4) ... Setting up libmodule-implementation-perl (0.09-1.1) ... Setting up libpackage-stash-perl (0.39-1) ... Setting up libtk8.6:armhf (8.6.12-1) ... Setting up libwww-curl-perl (4.17-7build1) ... Setting up debhelper (13.5.2ubuntu1) ... Setting up libmodule-runtime-conflicts-perl (0.003-1.1) ... Setting up libclass-load-perl (0.25-1) ... Setting up r-base-core (4.1.2-1ubuntu1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-lattice (0.20-45-1) ... Setting up libpackage-deprecationmanager-perl (0.17-1.1) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-1build6) ... Setting up libb-hooks-endofscope-perl (0.25-1) ... Setting up r-base-dev (4.1.2-1ubuntu1) ... Setting up libmoose-perl:armhf (2.2200-1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up r-cran-matrix (1.3-4-2) ... Setting up libwww-curl-simple-perl (0.100191-2) ... Setting up dh-r (20210218ubuntu1) ... Setting up sbuild-build-depends-r-bioc-rsubread-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.34-0ubuntu3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-163-generic arm64 (armv7l) Toolchain package versions: binutils_2.37-10ubuntu1 dpkg-dev_1.20.9ubuntu2 g++-11_11.2.0-12ubuntu1 gcc-11_11.2.0-12ubuntu1 libc6-dev_2.34-0ubuntu3 libstdc++-11-dev_11.2.0-12ubuntu1 libstdc++6_11.2.0-12ubuntu1 linux-libc-dev_5.15.0-12.12 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1ubuntu1 apt_2.3.13 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4ubuntu3 autotools-dev_20180224.1+nmu1 base-files_12ubuntu2 base-passwd_3.5.52 bash_5.1-5ubuntu1 binutils_2.37-10ubuntu1 binutils-arm-linux-gnueabihf_2.37-10ubuntu1 binutils-common_2.37-10ubuntu1 bsdextrautils_2.37.2-4ubuntu1 bsdutils_1:2.37.2-4ubuntu1 build-essential_12.9ubuntu2 bzip2_1.0.8-4ubuntu4 ca-certificates_20211016 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libwww-curl-perl_4.17-7build1 libwww-curl-simple-perl_0.100191-2 libx11-6_2:1.7.2-2 libx11-data_2:1.7.2-2 libxau6_1:1.0.9-1build4 libxcb-render0_1.14-3ubuntu2 libxcb-shm0_1.14-3ubuntu2 libxcb1_1.14-3ubuntu2 libxdmcp6_1:1.1.3-0ubuntu4 libxext6_2:1.3.4-1 libxft2_2.3.3-0ubuntu4 libxml2_2.9.12+dfsg-5 libxmuu1_2:1.1.3-0ubuntu2 libxrender1_1:0.9.10-1build3 libxss1_1:1.2.3-1build1 libxt6_1:1.2.0-1build1 libxxhash0_0.8.0-2build1 libzstd1_1.4.8+dfsg-3 linux-libc-dev_5.15.0-12.12 lockfile-progs_0.1.19 login_1:4.8.1-2ubuntu1 logsave_1.46.4-1ubuntu1 lsb-base_11.1.0ubuntu3 lto-disabled-list_16 m4_1.4.18-5ubuntu1 make_4.3-4ubuntu2 man-db_2.9.4-2build1 mawk_1.3.4.20200120-2build1 mount_2.37.2-4ubuntu1 ncurses-base_6.3-1 ncurses-bin_6.3-1 openssl_3.0.0-1ubuntu1 optipng_0.7.7-2 passwd_1:4.8.1-2ubuntu1 patch_2.7.6-7build1 perl_5.32.1-3ubuntu3 perl-base_5.32.1-3ubuntu3 perl-modules-5.32_5.32.1-3ubuntu3 pinentry-curses_1.1.1-1build1 pkg-config_0.29.2-1ubuntu2 pkgbinarymangler_149 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3 procps_2:3.3.17-5ubuntu3 r-base-core_4.1.2-1ubuntu1 r-base-dev_4.1.2-1ubuntu1 r-cran-lattice_0.20-45-1 r-cran-matrix_1.3-4-2 readline-common_8.1-2build1 rpcsvc-proto_1.4.2-0ubuntu5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-rsubread-dummy_0.invalid.0 sed_4.7-1ubuntu2 sensible-utils_0.0.17 systemd_248.3-1ubuntu8 systemd-sysv_248.3-1ubuntu8 systemd-timesyncd_248.3-1ubuntu8 sysvinit-utils_2.96-7ubuntu2 tar_1.34+dfsg-1build2 tzdata_2021e-1ubuntu1 ubuntu-keyring_2021.03.26 ucf_3.0043 unzip_6.0-26ubuntu2 usrmerge_25ubuntu2 util-linux_2.37.2-4ubuntu1 x11-common_1:7.7+23ubuntu1 xauth_1:1.1-1build1 xdg-utils_1.1.3-4.1ubuntu1 xz-utils_5.2.5-2build1 zip_3.0-12build1 zlib1g_1:1.2.11.dfsg-2ubuntu7 zlib1g-dev_1:1.2.11.dfsg-2ubuntu7 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu Sep 2 09:40:24 2021 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-bioc-rsubread_2.6.4-1.dsc dpkg-source: info: extracting r-bioc-rsubread in /<> dpkg-source: info: unpacking r-bioc-rsubread_2.6.4.orig.tar.gz dpkg-source: info: unpacking r-bioc-rsubread_2.6.4-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-22304863 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-22304863 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-22304863 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package r-bioc-rsubread dpkg-buildpackage: info: source version 2.6.4-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary-arch dh binary-arch --buildsystem R dh_update_autotools_config -a -O--buildsystem=R dh_autoreconf -a -O--buildsystem=R dh_auto_configure -a -O--buildsystem=R dh_auto_build -a -O--buildsystem=R dh_auto_test -a -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=R dh_prep -a -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-rsubread/ -a -O--buildsystem=R I: R Package: Rsubread Version: 2.6.4 I: Building using R version 4.1.2-1ubuntu1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Thu, 02 Sep 2021 11:37:52 +0200 mkdir -p /<>/debian/r-bioc-rsubread/usr/lib/R/site-library R CMD INSTALL -l /<>/debian/r-bioc-rsubread/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 02 Sep 2021 11:37:52 +0200'" * installing *source* package ‘Rsubread’ ... ** using staged installation @@@@@ The operating system is Linux. ** libs make[1]: Entering directory '/<>/src' gcc -I"/usr/share/R/include" -DNDEBUG -DMAKE_FOR_EXON -D SUBREAD_VERSION="\"Rsubread 2.6.4\"" -fpic -g -O2 -ffile-prefix-map=/build/r-base-0TAnD3/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c HelperFunctions.c -o HelperFunctions.o gcc -I"/usr/share/R/include" -DNDEBUG -DMAKE_FOR_EXON -D SUBREAD_VERSION="\"Rsubread 2.6.4\"" -fpic -g -O2 -ffile-prefix-map=/build/r-base-0TAnD3/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c LRMbase-index.c -o LRMbase-index.o gcc -I"/usr/share/R/include" -DNDEBUG -DMAKE_FOR_EXON -D SUBREAD_VERSION="\"Rsubread 2.6.4\"" -fpic -g -O2 -ffile-prefix-map=/build/r-base-0TAnD3/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c LRMchro-event.c -o LRMchro-event.o gcc -I"/usr/share/R/include" -DNDEBUG -DMAKE_FOR_EXON -D SUBREAD_VERSION="\"Rsubread 2.6.4\"" -fpic -g -O2 -ffile-prefix-map=/build/r-base-0TAnD3/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c LRMfile-io.c -o LRMfile-io.o gcc -I"/usr/share/R/include" -DNDEBUG -DMAKE_FOR_EXON -D SUBREAD_VERSION="\"Rsubread 2.6.4\"" -fpic -g -O2 -ffile-prefix-map=/build/r-base-0TAnD3/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c LRMhashtable.c -o LRMhashtable.o gcc -I"/usr/share/R/include" -DNDEBUG -DMAKE_FOR_EXON -D SUBREAD_VERSION="\"Rsubread 2.6.4\"" -fpic -g -O2 -ffile-prefix-map=/build/r-base-0TAnD3/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c LRMhelper.c -o LRMhelper.o gcc -I"/usr/share/R/include" -DNDEBUG -DMAKE_FOR_EXON -D SUBREAD_VERSION="\"Rsubread 2.6.4\"" -fpic -g -O2 -ffile-prefix-map=/build/r-base-0TAnD3/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c LRMseek-zlib.c -o LRMseek-zlib.o gcc -I"/usr/share/R/include" -DNDEBUG -DMAKE_FOR_EXON -D SUBREAD_VERSION="\"Rsubread 2.6.4\"" -fpic -g -O2 -ffile-prefix-map=/build/r-base-0TAnD3/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c LRMsorted-hashtable.c -o LRMsorted-hashtable.o gcc -I"/usr/share/R/include" -DNDEBUG -DMAKE_FOR_EXON -D SUBREAD_VERSION="\"Rsubread 2.6.4\"" -fpic -g -O2 -ffile-prefix-map=/build/r-base-0TAnD3/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_wrapper.c -o R_wrapper.o In file included from /usr/lib/gcc/arm-linux-gnueabihf/11/include/stdint.h:9, from HelperFunctions.h:172, from R_wrapper.c:35: /usr/include/stdint.h:96:33: error: conflicting types for ‘uintptr_t’; have ‘unsigned int’ 96 | typedef unsigned int uintptr_t; | ^~~~~~~~~ In file included from R_wrapper.c:30: /usr/share/R/include/Rinterface.h:110:24: note: previous declaration of ‘uintptr_t’ with type ‘uintptr_t’ {aka ‘long unsigned int’} 110 | typedef unsigned long uintptr_t; | ^~~~~~~~~ make[1]: *** [/usr/lib/R/etc/Makeconf:168: R_wrapper.o] Error 1 make[1]: Leaving directory '/<>/src' make[1]: Entering directory '/<>/src' make[1]: Leaving directory '/<>/src' ERROR: compilation failed for package ‘Rsubread’ * removing ‘/<>/debian/r-bioc-rsubread/usr/lib/R/site-library/Rsubread’ dh_auto_install: error: R CMD INSTALL -l /<>/debian/r-bioc-rsubread/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 02 Sep 2021 11:37:52 +0200'" returned exit code 1 make: *** [debian/rules:4: binary-arch] Error 25 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2021-12-01T09:14:49Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: any Build-Space: n/a Build-Time: 13 Distribution: jammy-proposed Fail-Stage: build Host Architecture: armhf Install-Time: 41 Job: r-bioc-rsubread_2.6.4-1.dsc Machine Architecture: arm64 Package: r-bioc-rsubread Package-Time: 57 Source-Version: 2.6.4-1 Space: n/a Status: attempted Version: 2.6.4-1 -------------------------------------------------------------------------------- Finished at 2021-12-01T09:14:49Z Build needed 00:00:57, no disk space E: Build failure (dpkg-buildpackage died) Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=jammy --arch=armhf PACKAGEBUILD-22304863 Scanning for processes to kill in build PACKAGEBUILD-22304863