RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux z13-026 4.3.0-0-generic #9 SMP Tue Dec 1 18:12:15 CET 2015 s390x Buildd toolchain package versions: launchpad-buildd_136 python-lpbuildd_136 sbuild_0.66.0-5ubuntu1 dpkg-dev_1.18.3ubuntu1 python-debian_0.1.27ubuntu1. Syncing the system clock with the buildd NTP service... 10 Dec 07:01:03 ntpdate[17472]: adjust time server 10.211.37.1 offset 0.000163 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-8381089', '/home/buildd/filecache-default/8808aeb45a9438550e8005f67e1dc6d720c06f47'] Unpacking chroot for build PACKAGEBUILD-8381089 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-8381089'] Mounting chroot for build PACKAGEBUILD-8381089 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-8381089', 'deb http://ftpmaster.internal/ubuntu xenial main universe'] Overriding sources.list in build-PACKAGEBUILD-8381089 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-8381089', 's390x'] Updating debian chroot for build PACKAGEBUILD-8381089 Get:1 http://ftpmaster.internal xenial InRelease [227 kB] Ign http://archive-team.internal xenial InRelease Ign http://archive-team.internal xenial Release.gpg Get:2 http://archive-team.internal xenial Release [755 B] Ign http://archive-team.internal xenial/main s390x Packages/DiffIndex Get:3 http://archive-team.internal xenial/main Translation-en [661 kB] Get:4 http://ftpmaster.internal xenial/main s390x Packages [1344 kB] Get:5 http://ftpmaster.internal xenial/universe s390x Packages [5828 kB] Get:6 http://archive-team.internal xenial/main s390x Packages [1611 kB] Get:7 http://ftpmaster.internal xenial/main Translation-en [845 kB] Get:8 http://ftpmaster.internal xenial/universe Translation-en [4747 kB] Fetched 15.3 MB in 6s (2321 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: libprocps4 The following packages will be upgraded: cpp-5 g++-5 gcc-5 gcc-5-base libatomic1 libcc1-0 libgcc-5-dev libgcc1 libgomp1 libncurses5 libncursesw5 libselinux1 libssl1.0.0 libstdc++-5-dev libstdc++6 libtinfo5 linux-libc-dev ncurses-base ncurses-bin openssl pkgbinarymangler procps 22 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 82.5 MB of archives. After this operation, 19.4 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ xenial/main libncurses5 s390x 6.0+20151024-2ubuntu1 [90.2 kB] Get:2 http://ftpmaster.internal/ubuntu/ xenial/main libtinfo5 s390x 6.0+20151024-2ubuntu1 [75.4 kB] Get:3 http://ftpmaster.internal/ubuntu/ xenial/main libncursesw5 s390x 6.0+20151024-2ubuntu1 [108 kB] Get:4 http://ftpmaster.internal/ubuntu/ xenial/main ncurses-bin s390x 6.0+20151024-2ubuntu1 [134 kB] Get:5 http://ftpmaster.internal/ubuntu/ xenial/main ncurses-base all 6.0+20151024-2ubuntu1 [17.1 kB] Get:6 http://ftpmaster.internal/ubuntu/ xenial/main libcc1-0 s390x 5.3.1-3ubuntu1 [38.5 kB] Get:7 http://ftpmaster.internal/ubuntu/ xenial/main libgomp1 s390x 5.3.1-3ubuntu1 [53.8 kB] Get:8 http://ftpmaster.internal/ubuntu/ xenial/main libatomic1 s390x 5.3.1-3ubuntu1 [7968 B] Get:9 http://ftpmaster.internal/ubuntu/ xenial/main gcc-5-base s390x 5.3.1-3ubuntu1 [16.3 kB] Get:10 http://ftpmaster.internal/ubuntu/ xenial/main libstdc++6 s390x 5.3.1-3ubuntu1 [398 kB] Get:11 http://ftpmaster.internal/ubuntu/ xenial/main g++-5 s390x 5.3.1-3ubuntu1 [27.1 MB] Get:12 http://ftpmaster.internal/ubuntu/ xenial/main libstdc++-5-dev s390x 5.3.1-3ubuntu1 [1356 kB] Get:13 http://ftpmaster.internal/ubuntu/ xenial/main libgcc-5-dev s390x 5.3.1-3ubuntu1 [218 kB] Get:14 http://ftpmaster.internal/ubuntu/ xenial/main gcc-5 s390x 5.3.1-3ubuntu1 [25.4 MB] Get:15 http://ftpmaster.internal/ubuntu/ xenial/main cpp-5 s390x 5.3.1-3ubuntu1 [25.1 MB] Get:16 http://ftpmaster.internal/ubuntu/ xenial/main libgcc1 s390x 1:5.3.1-3ubuntu1 [24.8 kB] Get:17 http://ftpmaster.internal/ubuntu/ xenial/main libselinux1 s390x 2.4-3 [53.3 kB] Get:18 http://ftpmaster.internal/ubuntu/ xenial/main libprocps4 s390x 2:3.3.10-4ubuntu1 [31.7 kB] Get:19 http://ftpmaster.internal/ubuntu/ xenial/main libssl1.0.0 s390x 1.0.2e-1ubuntu1 [794 kB] Get:20 http://ftpmaster.internal/ubuntu/ xenial/main procps s390x 2:3.3.10-4ubuntu1 [221 kB] Get:21 http://ftpmaster.internal/ubuntu/ xenial/main openssl s390x 1.0.2e-1ubuntu1 [477 kB] Get:22 http://ftpmaster.internal/ubuntu/ xenial/main linux-libc-dev s390x 4.3.0-2.11 [805 kB] Get:23 http://ftpmaster.internal/ubuntu/ xenial/main pkgbinarymangler all 125 [41.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 82.5 MB in 24s (3318 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11407 files and directories currently installed.) Preparing to unpack .../libncurses5_6.0+20151024-2ubuntu1_s390x.deb ... Unpacking libncurses5:s390x (6.0+20151024-2ubuntu1) over (5.9+20150516-2ubuntu1) ... Preparing to unpack .../libtinfo5_6.0+20151024-2ubuntu1_s390x.deb ... Unpacking libtinfo5:s390x (6.0+20151024-2ubuntu1) over (5.9+20150516-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libtinfo5:s390x (6.0+20151024-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11407 files and directories currently installed.) Preparing to unpack .../libncursesw5_6.0+20151024-2ubuntu1_s390x.deb ... Unpacking libncursesw5:s390x (6.0+20151024-2ubuntu1) over (5.9+20150516-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libncursesw5:s390x (6.0+20151024-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11407 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.0+20151024-2ubuntu1_s390x.deb ... Unpacking ncurses-bin (6.0+20151024-2ubuntu1) over (5.9+20150516-2ubuntu1) ... Setting up ncurses-bin (6.0+20151024-2ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11403 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.0+20151024-2ubuntu1_all.deb ... Unpacking ncurses-base (6.0+20151024-2ubuntu1) over (5.9+20150516-2ubuntu1) ... Setting up ncurses-base (6.0+20151024-2ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11404 files and directories currently installed.) Preparing to unpack .../libcc1-0_5.3.1-3ubuntu1_s390x.deb ... Unpacking libcc1-0:s390x (5.3.1-3ubuntu1) over (5.2.1-27ubuntu1) ... Preparing to unpack .../libgomp1_5.3.1-3ubuntu1_s390x.deb ... Unpacking libgomp1:s390x (5.3.1-3ubuntu1) over (5.2.1-27ubuntu1) ... Preparing to unpack .../libatomic1_5.3.1-3ubuntu1_s390x.deb ... Unpacking libatomic1:s390x (5.3.1-3ubuntu1) over (5.2.1-27ubuntu1) ... Preparing to unpack .../gcc-5-base_5.3.1-3ubuntu1_s390x.deb ... Unpacking gcc-5-base:s390x (5.3.1-3ubuntu1) over (5.2.1-27ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up gcc-5-base:s390x (5.3.1-3ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11404 files and directories currently installed.) Preparing to unpack .../libstdc++6_5.3.1-3ubuntu1_s390x.deb ... Unpacking libstdc++6:s390x (5.3.1-3ubuntu1) over (5.2.1-27ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libstdc++6:s390x (5.3.1-3ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11404 files and directories currently installed.) Preparing to unpack .../g++-5_5.3.1-3ubuntu1_s390x.deb ... Unpacking g++-5 (5.3.1-3ubuntu1) over (5.2.1-27ubuntu1) ... Preparing to unpack .../libstdc++-5-dev_5.3.1-3ubuntu1_s390x.deb ... Unpacking libstdc++-5-dev:s390x (5.3.1-3ubuntu1) over (5.2.1-27ubuntu1) ... Preparing to unpack .../libgcc-5-dev_5.3.1-3ubuntu1_s390x.deb ... Unpacking libgcc-5-dev:s390x (5.3.1-3ubuntu1) over (5.2.1-27ubuntu1) ... Preparing to unpack .../gcc-5_5.3.1-3ubuntu1_s390x.deb ... Unpacking gcc-5 (5.3.1-3ubuntu1) over (5.2.1-27ubuntu1) ... Preparing to unpack .../cpp-5_5.3.1-3ubuntu1_s390x.deb ... Unpacking cpp-5 (5.3.1-3ubuntu1) over (5.2.1-27ubuntu1) ... Preparing to unpack .../libgcc1_1%3a5.3.1-3ubuntu1_s390x.deb ... Unpacking libgcc1:s390x (1:5.3.1-3ubuntu1) over (1:5.2.1-27ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libgcc1:s390x (1:5.3.1-3ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11401 files and directories currently installed.) Preparing to unpack .../libselinux1_2.4-3_s390x.deb ... Unpacking libselinux1:s390x (2.4-3) over (2.3-2build1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libselinux1:s390x (2.4-3) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Selecting previously unselected package libprocps4:s390x. (Reading database ... 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Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Unpacking procps (2:3.3.10-4ubuntu1) over (1:3.3.9-1ubuntu8) ... Preparing to unpack .../openssl_1.0.2e-1ubuntu1_s390x.deb ... Unpacking openssl (1.0.2e-1ubuntu1) over (1.0.2d-0ubuntu2) ... Preparing to unpack .../linux-libc-dev_4.3.0-2.11_s390x.deb ... Unpacking linux-libc-dev:s390x (4.3.0-2.11) over (4.3.0-1.10) ... Preparing to unpack .../pkgbinarymangler_125_all.deb ... Unpacking pkgbinarymangler (125) over (123) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Processing triggers for systemd (228-2ubuntu1) ... Setting up libncurses5:s390x (6.0+20151024-2ubuntu1) ... Setting up libcc1-0:s390x (5.3.1-3ubuntu1) ... Setting up libgomp1:s390x (5.3.1-3ubuntu1) ... Setting up libatomic1:s390x (5.3.1-3ubuntu1) ... Setting up cpp-5 (5.3.1-3ubuntu1) ... Setting up libgcc-5-dev:s390x (5.3.1-3ubuntu1) ... Setting up gcc-5 (5.3.1-3ubuntu1) ... Setting up libstdc++-5-dev:s390x (5.3.1-3ubuntu1) ... Setting up g++-5 (5.3.1-3ubuntu1) ... Setting up libprocps4:s390x (2:3.3.10-4ubuntu1) ... Setting up libssl1.0.0:s390x (1.0.2e-1ubuntu1) ... Setting up procps (2:3.3.10-4ubuntu1) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up openssl (1.0.2e-1ubuntu1) ... Setting up linux-libc-dev:s390x (4.3.0-2.11) ... Setting up pkgbinarymangler (125) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-8381089', 's390x', 'xenial', '-c', 'chroot:autobuild', '--arch=s390x', '--dist=xenial', '--purge=never', '--nolog', 'r-bioc-rtracklayer_1.30.1-1.dsc'] Initiating build PACKAGEBUILD-8381089 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.3.0-0-generic #9 SMP Tue Dec 1 18:12:15 CET 2015 s390x sbuild (Debian sbuild) 0.66.0 (04 Oct 2015) on z13-026.buildd +==============================================================================+ | r-bioc-rtracklayer 1.30.1-1 (s390x) 10 Dec 2015 07:01 | +==============================================================================+ Package: r-bioc-rtracklayer Version: 1.30.1-1 Source Version: 1.30.1-1 Distribution: xenial Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x I: NOTICE: Log filtering will replace 'build/r-bioc-rtracklayer-EjkYz9/r-bioc-rtracklayer-1.30.1' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-rtracklayer-EjkYz9' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-8381089/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-bioc-rtracklayer_1.30.1-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-hdlkit/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign file: ./ InRelease Ign file: ./ Release.gpg Get:1 file: ./ Release [2119 B] Ign file: ./ Translation-en Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/772 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed Authentication warning overridden. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11412 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 9), cdbs, r-base-dev, r-cran-xml, r-cran-rcurl, r-bioc-genomicalignments (>= 1.6.0) Filtered Build-Depends: debhelper (>= 9), cdbs, r-base-dev, r-cran-xml, r-cran-rcurl, r-bioc-genomicalignments (>= 1.6.0) dpkg-deb: building package 'sbuild-build-depends-r-bioc-rtracklayer-dummy' in '/<>/resolver-j9sEd4/apt_archive/sbuild-build-depends-r-bioc-rtracklayer-dummy.deb'. Ign file: ./ InRelease Ign file: ./ Release.gpg Get:1 file: ./ Release [2119 B] Ign file: ./ Translation-en Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install r-bioc-rtracklayer build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autoconf automake autotools-dev bsdmainutils cdbs debhelper dh-strip-nondeterminism dh-translations file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-5 groff-base intltool intltool-debian libarchive-zip-perl libasprintf0v5 libblas-common libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libcurl3 libdatrie1 libencode-locale-perl libexpat1 libfile-listing-perl libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgfortran-5-dev libgfortran3 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libicu55 libio-html-perl libio-socket-ssl-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic1 libncurses5-dev libnet-http-perl libnet-ssleay-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng12-dev libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline-dev libreadline6-dev libsigsegv2 libsm6 libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev libtk8.6 libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2 libxrender1 libxss1 libxt6 littler m4 man-db mime-support netbase po-debconf python python-minimal python-scour python2.7 python2.7-minimal r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges r-bioc-rsamtools r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-xvector r-cran-base64enc r-cran-batchjobs r-cran-bbmisc r-cran-bitops r-cran-brew r-cran-checkmate r-cran-codetools r-cran-dbi r-cran-digest r-cran-fail r-cran-foreach r-cran-futile.logger r-cran-futile.options r-cran-iterators r-cran-lambda.r r-cran-littler r-cran-magrittr r-cran-pkgkitten r-cran-plyr r-cran-rcpp r-cran-rcurl r-cran-rsqlite r-cran-sendmailr r-cran-snow r-cran-stringi r-cran-stringr r-cran-xml ucf unzip x11-common xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc libtool wamerican wordlist whois vacation devscripts dh-make gettext-doc gfortran-multilib gfortran-doc gfortran-5-multilib gfortran-5-doc libgfortran3-dbg groff libdata-dump-perl libcrypt-ssleay-perl liblzma-doc ncurses-doc readline-doc tcl8.6 tk8.6 libauthen-ntlm-perl less www-browser libmail-box-perl python-doc python-tk python-rsvg python-cairo python2.7-doc binfmt-support r-doc-info r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo r-cran-mpi r-cran-rmysql r-cran-getopt r-cran-inline r-cran-runit r-cran-rmpi r-cran-rsprng r-cran-rlecuyer gvfs-bin Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev bzip2-doc libglib2.0-data shared-mime-info xdg-user-dirs libhtml-format-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl xml-core ifupdown libmail-sendmail-perl r-recommended r-doc-html r-cran-doparallel r-bioc-shortread r-cran-mass r-cran-crayon r-cran-domc r-cran-abind libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autotools-dev bsdmainutils cdbs debhelper dh-strip-nondeterminism dh-translations file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-5 groff-base intltool intltool-debian libarchive-zip-perl libasprintf0v5 libblas-common libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libcurl3 libdatrie1 libencode-locale-perl libexpat1 libfile-listing-perl libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgfortran-5-dev libgfortran3 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libicu55 libio-html-perl libio-socket-ssl-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic1 libncurses5-dev libnet-http-perl libnet-ssleay-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng12-dev libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline-dev libreadline6-dev libsigsegv2 libsm6 libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev libtk8.6 libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2 libxrender1 libxss1 libxt6 littler m4 man-db mime-support netbase po-debconf python python-minimal python-scour python2.7 python2.7-minimal r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges r-bioc-rsamtools r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-xvector r-cran-base64enc r-cran-batchjobs r-cran-bbmisc r-cran-bitops r-cran-brew r-cran-checkmate r-cran-codetools r-cran-dbi r-cran-digest r-cran-fail r-cran-foreach r-cran-futile.logger r-cran-futile.options r-cran-iterators r-cran-lambda.r r-cran-littler r-cran-magrittr r-cran-pkgkitten r-cran-plyr r-cran-rcpp r-cran-rcurl r-cran-rsqlite r-cran-sendmailr r-cran-snow r-cran-stringi r-cran-stringr r-cran-xml sbuild-build-depends-r-bioc-rtracklayer-dummy ucf unzip x11-common xdg-utils zip zlib1g-dev 0 upgraded, 169 newly installed, 0 to remove and 0 not upgraded. Need to get 132 MB/132 MB of archives. After this operation, 373 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libasprintf0v5 groff-base libpython2.7-minimal python-minimal libpython2.7-stdlib python2.7 libpython-stdlib python file libx11-data libfile-stripnondeterminism-perl dh-strip-nondeterminism libhtml-parser-perl libnet-ssleay-perl libxml-parser-perl libblas-common libblas3 x11-common libjpeg8 libjpeg8-dev libjpeg-dev liblapack3 libthai-data libpaper-utils libpcre3-dev libreadline-dev libtcl8.6 libtk8.6 sbuild-build-depends-r-bioc-rtracklayer-dummy Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ xenial/main libasprintf0v5 s390x 0.19.4-1ubuntu3 [6638 B] Get:2 http://ftpmaster.internal/ubuntu/ xenial/main groff-base s390x 1.22.3-4 [1199 kB] Get:3 http://ftpmaster.internal/ubuntu/ xenial/main bsdmainutils s390x 9.0.6ubuntu1 [178 kB] Get:4 http://ftpmaster.internal/ubuntu/ xenial/main libpipeline1 s390x 1.4.1-1 [24.7 kB] Get:5 http://ftpmaster.internal/ubuntu/ xenial/main man-db s390x 2.7.5-1 [850 kB] Get:6 http://ftpmaster.internal/ubuntu/ xenial/main fonts-dejavu-core all 2.35-1 [1039 kB] Get:7 http://ftpmaster.internal/ubuntu/ xenial/main ucf all 3.0031 [52.7 kB] Get:8 http://ftpmaster.internal/ubuntu/ xenial/main fontconfig-config all 2.11.1-0ubuntu6 [48.7 kB] Get:9 http://ftpmaster.internal/ubuntu/ xenial/main libexpat1 s390x 2.1.0-7 [65.4 kB] Get:10 http://ftpmaster.internal/ubuntu/ xenial/main libfreetype6 s390x 2.5.2-4ubuntu2 [300 kB] Get:11 http://ftpmaster.internal/ubuntu/ xenial/main libfontconfig1 s390x 2.11.1-0ubuntu6 [125 kB] Get:12 http://ftpmaster.internal/ubuntu/ xenial/main fontconfig s390x 2.11.1-0ubuntu6 [176 kB] Get:13 http://ftpmaster.internal/ubuntu/ xenial/main libjpeg-turbo8 s390x 1.3.0-0ubuntu2 [97.3 kB] Get:14 http://ftpmaster.internal/ubuntu/ xenial/main libpcrecpp0v5 s390x 2:8.35-7.1ubuntu1 [14.6 kB] Get:15 http://ftpmaster.internal/ubuntu/ xenial/main libpython2.7-minimal s390x 2.7.10-4ubuntu2 [337 kB] Get:16 http://ftpmaster.internal/ubuntu/ xenial/main python2.7-minimal s390x 2.7.10-4ubuntu2 [1048 kB] Get:17 http://ftpmaster.internal/ubuntu/ xenial/main python-minimal s390x 2.7.9-1 [28.2 kB] Get:18 http://ftpmaster.internal/ubuntu/ xenial/main mime-support all 3.59ubuntu1 [31.0 kB] Get:19 http://ftpmaster.internal/ubuntu/ xenial/main libpython2.7-stdlib s390x 2.7.10-4ubuntu2 [1761 kB] Get:20 http://ftpmaster.internal/ubuntu/ xenial/main python2.7 s390x 2.7.10-4ubuntu2 [210 kB] Get:21 http://ftpmaster.internal/ubuntu/ xenial/main libpython-stdlib s390x 2.7.9-1 [7720 B] Get:22 http://ftpmaster.internal/ubuntu/ xenial/main python s390x 2.7.9-1 [137 kB] Get:23 http://ftpmaster.internal/ubuntu/ xenial/main libmagic1 s390x 1:5.25-2ubuntu1 [214 kB] Get:24 http://ftpmaster.internal/ubuntu/ xenial/main file s390x 1:5.25-2ubuntu1 [21.5 kB] Get:25 http://ftpmaster.internal/ubuntu/ xenial/main netbase all 5.3 [12.9 kB] Get:26 http://ftpmaster.internal/ubuntu/ xenial/main gettext-base s390x 0.19.4-1ubuntu3 [48.3 kB] Get:27 http://ftpmaster.internal/ubuntu/ xenial/main libglib2.0-0 s390x 2.47.3-3 [1041 kB] Get:28 http://ftpmaster.internal/ubuntu/ xenial/main libicu55 s390x 55.1-6ubuntu1 [7478 kB] Get:29 http://ftpmaster.internal/ubuntu/ xenial/main libxau6 s390x 1:1.0.8-1 [7420 B] Get:30 http://ftpmaster.internal/ubuntu/ xenial/main libxdmcp6 s390x 1:1.1.2-1.1 [11.0 kB] Get:31 http://ftpmaster.internal/ubuntu/ xenial/main libxcb1 s390x 1.11.1-1ubuntu1 [38.8 kB] Get:32 http://ftpmaster.internal/ubuntu/ xenial/main libx11-data all 2:1.6.3-1ubuntu2 [113 kB] Get:33 http://ftpmaster.internal/ubuntu/ xenial/main libx11-6 s390x 2:1.6.3-1ubuntu2 [544 kB] Get:34 http://ftpmaster.internal/ubuntu/ xenial/main libxext6 s390x 2:1.3.3-1 [27.8 kB] Get:35 http://ftpmaster.internal/ubuntu/ xenial/main libxml2 s390x 2.9.2+zdfsg1-4ubuntu1 [640 kB] Get:36 http://ftpmaster.internal/ubuntu/ xenial/main libsigsegv2 s390x 2.10-4 [13.4 kB] Get:37 http://ftpmaster.internal/ubuntu/ xenial/main m4 s390x 1.4.17-4 [192 kB] Get:38 http://ftpmaster.internal/ubuntu/ xenial/main autoconf all 2.69-9 [321 kB] Get:39 http://ftpmaster.internal/ubuntu/ xenial/main autotools-dev all 20150820.1 [39.8 kB] Get:40 http://ftpmaster.internal/ubuntu/ xenial/main automake all 1:1.15-1ubuntu1 [511 kB] Get:41 http://ftpmaster.internal/ubuntu/ xenial/main libcroco3 s390x 0.6.9-1 [77.2 kB] Get:42 http://ftpmaster.internal/ubuntu/ xenial/main libunistring0 s390x 0.9.3-5.2ubuntu1 [262 kB] Get:43 http://ftpmaster.internal/ubuntu/ xenial/main gettext s390x 0.19.4-1ubuntu3 [838 kB] Get:44 http://ftpmaster.internal/ubuntu/ xenial/main intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:45 http://ftpmaster.internal/ubuntu/ xenial/main po-debconf all 1.0.18 [234 kB] Get:46 http://ftpmaster.internal/ubuntu/ xenial/main libarchive-zip-perl all 1.53-1 [87.0 kB] Get:47 http://ftpmaster.internal/ubuntu/ xenial/main libfile-stripnondeterminism-perl all 0.014-1 [10.1 kB] Get:48 http://ftpmaster.internal/ubuntu/ xenial/main libtimedate-perl all 2.3000-2 [37.5 kB] Get:49 http://ftpmaster.internal/ubuntu/ xenial/main dh-strip-nondeterminism all 0.014-1 [5596 B] Get:50 http://ftpmaster.internal/ubuntu/ xenial/main debhelper all 9.20151126ubuntu1 [741 kB] Get:51 http://ftpmaster.internal/ubuntu/ xenial/main liburi-perl all 1.69-1 [84.5 kB] Get:52 http://ftpmaster.internal/ubuntu/ xenial/main libencode-locale-perl all 1.05-1 [12.3 kB] Get:53 http://ftpmaster.internal/ubuntu/ xenial/main libhttp-date-perl all 6.02-1 [10.4 kB] Get:54 http://ftpmaster.internal/ubuntu/ xenial/main libfile-listing-perl all 6.04-1 [9774 B] Get:55 http://ftpmaster.internal/ubuntu/ xenial/main libhtml-tagset-perl all 3.20-2 [13.5 kB] Get:56 http://ftpmaster.internal/ubuntu/ xenial/main libhtml-parser-perl s390x 3.71-2 [89.8 kB] Get:57 http://ftpmaster.internal/ubuntu/ xenial/main libhtml-tree-perl all 5.03-2 [197 kB] Get:58 http://ftpmaster.internal/ubuntu/ xenial/main libio-html-perl all 1.001-1 [14.9 kB] Get:59 http://ftpmaster.internal/ubuntu/ xenial/main liblwp-mediatypes-perl all 6.02-1 [21.7 kB] Get:60 http://ftpmaster.internal/ubuntu/ xenial/main libhttp-message-perl all 6.11-1 [74.3 kB] Get:61 http://ftpmaster.internal/ubuntu/ xenial/main libhttp-cookies-perl all 6.01-1 [17.2 kB] Get:62 http://ftpmaster.internal/ubuntu/ xenial/main libhttp-negotiate-perl all 6.00-2 [13.4 kB] Get:63 http://ftpmaster.internal/ubuntu/ xenial/main libnet-ssleay-perl s390x 1.72-1 [253 kB] Get:64 http://ftpmaster.internal/ubuntu/ xenial/main libio-socket-ssl-perl all 2.021-1 [161 kB] Get:65 http://ftpmaster.internal/ubuntu/ xenial/main libnet-http-perl all 6.09-1 [24.0 kB] Get:66 http://ftpmaster.internal/ubuntu/ xenial/main liblwp-protocol-https-perl all 6.06-2 [8682 B] Get:67 http://ftpmaster.internal/ubuntu/ xenial/main libwww-robotrules-perl all 6.01-1 [14.1 kB] Get:68 http://ftpmaster.internal/ubuntu/ xenial/main libwww-perl all 6.15-1 [146 kB] Get:69 http://ftpmaster.internal/ubuntu/ xenial/main libxml-parser-perl s390x 2.44-1 [204 kB] Get:70 http://ftpmaster.internal/ubuntu/ xenial/main intltool all 0.51.0-1 [44.7 kB] Get:71 http://ftpmaster.internal/ubuntu/ xenial/main dh-translations all 125 [22.0 kB] Get:72 http://ftpmaster.internal/ubuntu/ xenial/main python-scour all 0.26-3ubuntu1 [40.4 kB] Get:73 http://ftpmaster.internal/ubuntu/ xenial/main cdbs all 0.4.130ubuntu2 [42.8 kB] Get:74 http://ftpmaster.internal/ubuntu/ xenial/main libgfortran3 s390x 5.3.1-3ubuntu1 [228 kB] Get:75 http://ftpmaster.internal/ubuntu/ xenial/main libgfortran-5-dev s390x 5.3.1-3ubuntu1 [256 kB] Get:76 http://ftpmaster.internal/ubuntu/ xenial/main gfortran-5 s390x 5.3.1-3ubuntu1 [26.0 MB] Get:77 http://ftpmaster.internal/ubuntu/ xenial/main gfortran s390x 4:5.2.1-16ubuntu2 [1288 B] Get:78 http://ftpmaster.internal/ubuntu/ xenial/main libblas-common s390x 1.2.20110419-11 [3044 B] Get:79 http://ftpmaster.internal/ubuntu/ xenial/main libblas3 s390x 1.2.20110419-11 [136 kB] Get:80 http://ftpmaster.internal/ubuntu/ xenial/main libblas-dev s390x 1.2.20110419-11 [131 kB] Get:81 http://ftpmaster.internal/ubuntu/ xenial/main libbz2-dev s390x 1.0.6-8 [31.5 kB] Get:82 http://ftpmaster.internal/ubuntu/ xenial/main libpixman-1-0 s390x 0.33.4-1 [138 kB] Get:83 http://ftpmaster.internal/ubuntu/ xenial/main libxcb-render0 s390x 1.11.1-1ubuntu1 [11.4 kB] Get:84 http://ftpmaster.internal/ubuntu/ xenial/main libxcb-shm0 s390x 1.11.1-1ubuntu1 [5488 B] Get:85 http://ftpmaster.internal/ubuntu/ xenial/main libxrender1 s390x 1:0.9.9-0ubuntu1 [17.6 kB] Get:86 http://ftpmaster.internal/ubuntu/ xenial/main libcairo2 s390x 1.14.4-1 [520 kB] Get:87 http://ftpmaster.internal/ubuntu/ xenial/main libcurl3 s390x 7.45.0-1ubuntu1 [175 kB] Get:88 http://ftpmaster.internal/ubuntu/ xenial/main libdatrie1 s390x 0.2.10-1 [17.1 kB] Get:89 http://ftpmaster.internal/ubuntu/ xenial/main libgraphite2-3 s390x 1.2.4-3ubuntu1 [52.1 kB] Get:90 http://ftpmaster.internal/ubuntu/ xenial/main libharfbuzz0b s390x 1.0.1-1build2 [136 kB] Get:91 http://ftpmaster.internal/ubuntu/ xenial/main x11-common all 1:7.7+12ubuntu1 [22.4 kB] Get:92 http://ftpmaster.internal/ubuntu/ xenial/main libice6 s390x 2:1.0.9-1 [37.3 kB] Get:93 http://ftpmaster.internal/ubuntu/ xenial/main libjpeg-turbo8-dev s390x 1.3.0-0ubuntu2 [231 kB] Get:94 http://ftpmaster.internal/ubuntu/ xenial/main libjpeg8 s390x 8c-2ubuntu8 [2142 B] Get:95 http://ftpmaster.internal/ubuntu/ xenial/main libjpeg8-dev s390x 8c-2ubuntu8 [1612 B] Get:96 http://ftpmaster.internal/ubuntu/ xenial/main libjpeg-dev s390x 8c-2ubuntu8 [1612 B] Get:97 http://ftpmaster.internal/ubuntu/ xenial/main liblapack3 s390x 3.5.0-5 [1404 kB] Get:98 http://ftpmaster.internal/ubuntu/ xenial/main liblapack-dev s390x 3.5.0-5 [1386 kB] Get:99 http://ftpmaster.internal/ubuntu/ xenial/main libtinfo-dev s390x 6.0+20151024-2ubuntu1 [80.2 kB] Get:100 http://ftpmaster.internal/ubuntu/ xenial/main libncurses5-dev s390x 6.0+20151024-2ubuntu1 [172 kB] Get:101 http://ftpmaster.internal/ubuntu/ xenial/main libthai-data all 0.1.24-1 [131 kB] Get:102 http://ftpmaster.internal/ubuntu/ xenial/main libthai0 s390x 0.1.24-1 [17.3 kB] Get:103 http://ftpmaster.internal/ubuntu/ xenial/main libpango-1.0-0 s390x 1.38.1-1 [144 kB] Get:104 http://ftpmaster.internal/ubuntu/ xenial/main libpangoft2-1.0-0 s390x 1.38.1-1 [32.1 kB] Get:105 http://ftpmaster.internal/ubuntu/ xenial/main libpangocairo-1.0-0 s390x 1.38.1-1 [19.2 kB] Get:106 http://ftpmaster.internal/ubuntu/ xenial/main libpaper1 s390x 1.1.24+nmu4ubuntu1 [13.6 kB] Get:107 http://ftpmaster.internal/ubuntu/ xenial/main libpaper-utils s390x 1.1.24+nmu4ubuntu1 [8180 B] Get:108 http://ftpmaster.internal/ubuntu/ xenial/main libpcre16-3 s390x 2:8.35-7.1ubuntu1 [78.9 kB] Get:109 http://ftpmaster.internal/ubuntu/ xenial/main libpcre32-3 s390x 2:8.35-7.1ubuntu1 [73.8 kB] Get:110 http://ftpmaster.internal/ubuntu/ xenial/main libpcre3-dev s390x 2:8.35-7.1ubuntu1 [370 kB] Get:111 http://ftpmaster.internal/ubuntu/ xenial/main zlib1g-dev s390x 1:1.2.8.dfsg-2ubuntu4 [168 kB] Get:112 http://ftpmaster.internal/ubuntu/ xenial/main libpng12-dev s390x 1.2.54-1 [183 kB] Get:113 http://ftpmaster.internal/ubuntu/ xenial/main libreadline6-dev s390x 6.3-8ubuntu1 [125 kB] Get:114 http://ftpmaster.internal/ubuntu/ xenial/main libreadline-dev s390x 6.3-8ubuntu1 [992 B] Get:115 http://ftpmaster.internal/ubuntu/ xenial/main libsm6 s390x 2:1.2.2-1 [15.3 kB] Get:116 http://ftpmaster.internal/ubuntu/ xenial/main libtcl8.6 s390x 8.6.4+dfsg-2ubuntu1 [816 kB] Get:117 http://ftpmaster.internal/ubuntu/ xenial/main libjbig0 s390x 2.1-3.1 [26.6 kB] Get:118 http://ftpmaster.internal/ubuntu/ xenial/main libtiff5 s390x 4.0.5-1 [139 kB] Get:119 http://ftpmaster.internal/ubuntu/ xenial/main libxft2 s390x 2.3.2-1 [36.7 kB] Get:120 http://ftpmaster.internal/ubuntu/ xenial/main libxss1 s390x 1:1.2.2-1 [7602 B] Get:121 http://ftpmaster.internal/ubuntu/ xenial/main libtk8.6 s390x 8.6.4+dfsg-2ubuntu1 [660 kB] Get:122 http://ftpmaster.internal/ubuntu/ xenial/main libxt6 s390x 1:1.1.5-0ubuntu1 [147 kB] Get:123 http://ftpmaster.internal/ubuntu/ xenial/main zip s390x 3.0-11 [158 kB] Get:124 http://ftpmaster.internal/ubuntu/ xenial/main unzip s390x 6.0-20ubuntu1 [156 kB] Get:125 http://ftpmaster.internal/ubuntu/ xenial/main xdg-utils all 1.1.0~rc3+git20150907-1ubuntu3 [58.1 kB] Get:126 http://ftpmaster.internal/ubuntu/ xenial/universe r-base-core s390x 3.2.2.20151203-1 [20.3 MB] Get:127 http://ftpmaster.internal/ubuntu/ xenial/universe r-cran-littler s390x 0.3.0-2 [58.6 kB] Get:128 http://ftpmaster.internal/ubuntu/ xenial/universe littler all 0.3.0-2 [2864 B] Get:129 http://ftpmaster.internal/ubuntu/ xenial/main liblzma-dev s390x 5.1.1alpha+20120614-2ubuntu2 [140 kB] Get:130 http://ftpmaster.internal/ubuntu/ xenial/universe r-base-dev all 3.2.2.20151203-1 [4358 B] Get:131 http://ftpmaster.internal/ubuntu/ xenial/universe r-bioc-biocgenerics all 0.16.0-1 [475 kB] Get:132 http://ftpmaster.internal/ubuntu/ xenial/universe r-bioc-biobase s390x 2.30.0-1 [2000 kB] Get:133 http://ftpmaster.internal/ubuntu/ xenial/universe r-cran-checkmate s390x 1.6.0-1 [271 kB] Get:134 http://ftpmaster.internal/ubuntu/ xenial/universe r-cran-bbmisc s390x 1.9-1 [280 kB] Get:135 http://ftpmaster.internal/ubuntu/ xenial/universe r-cran-brew s390x 1.0-6-1 [61.1 kB] Get:136 http://ftpmaster.internal/ubuntu/ xenial/universe r-cran-digest s390x 0.6.8-1 [87.7 kB] Get:137 http://ftpmaster.internal/ubuntu/ xenial/universe r-cran-dbi s390x 0.3.1-1 [164 kB] Get:138 http://ftpmaster.internal/ubuntu/ xenial/universe r-cran-rsqlite s390x 1.0.0-2 [304 kB] Get:139 http://ftpmaster.internal/ubuntu/ xenial/universe r-cran-pkgkitten all 0.1.3-1 [17.7 kB] Get:140 http://ftpmaster.internal/ubuntu/ xenial/universe r-cran-rcpp s390x 0.12.2-1 [2062 kB] Get:141 http://ftpmaster.internal/ubuntu/ xenial/universe r-cran-plyr s390x 1.8.3-1 [729 kB] Get:142 http://ftpmaster.internal/ubuntu/ xenial/universe r-cran-magrittr s390x 1.5-1 [146 kB] Get:143 http://ftpmaster.internal/ubuntu/ xenial/universe r-cran-stringi s390x 1.0-1-1 [643 kB] Get:144 http://ftpmaster.internal/ubuntu/ xenial/universe r-cran-stringr all 1.0.0-1 [77.0 kB] Get:145 http://ftpmaster.internal/ubuntu/ xenial/universe r-cran-base64enc s390x 0.1-2-1 [19.6 kB] Get:146 http://ftpmaster.internal/ubuntu/ xenial/universe r-cran-sendmailr s390x 1.2-1-1 [29.1 kB] Get:147 http://ftpmaster.internal/ubuntu/ xenial/universe r-cran-fail s390x 1.3-1 [43.3 kB] Get:148 http://ftpmaster.internal/ubuntu/ xenial/universe r-cran-batchjobs s390x 1.6-1 [423 kB] Get:149 http://ftpmaster.internal/ubuntu/ xenial/universe r-cran-codetools all 0.2-14-1 [46.0 kB] Get:150 http://ftpmaster.internal/ubuntu/ xenial/universe r-cran-iterators all 1.0.8-1 [307 kB] Get:151 http://ftpmaster.internal/ubuntu/ xenial/universe r-cran-foreach all 1.4.3-1 [371 kB] Get:152 http://ftpmaster.internal/ubuntu/ xenial/universe r-cran-lambda.r all 1.1.7-2 [66.3 kB] Get:153 http://ftpmaster.internal/ubuntu/ xenial/universe r-cran-futile.options all 1.0.0-2 [15.4 kB] Get:154 http://ftpmaster.internal/ubuntu/ xenial/universe r-cran-futile.logger all 1.4.1-1 [83.6 kB] Get:155 http://ftpmaster.internal/ubuntu/ xenial/universe r-cran-snow all 1:0.4.1-1 [64.2 kB] Get:156 http://ftpmaster.internal/ubuntu/ xenial/universe r-bioc-biocparallel all 1.4.0-1 [626 kB] Get:157 http://ftpmaster.internal/ubuntu/ xenial/universe r-bioc-s4vectors s390x 0.8.0-1 [810 kB] Get:158 http://ftpmaster.internal/ubuntu/ xenial/universe r-bioc-iranges s390x 2.4.1-1 [1483 kB] Get:159 http://ftpmaster.internal/ubuntu/ xenial/universe r-bioc-xvector s390x 0.10.0-1 [332 kB] Get:160 http://ftpmaster.internal/ubuntu/ xenial/universe r-bioc-biostrings s390x 2.38.0-1 [13.6 MB] Get:161 http://ftpmaster.internal/ubuntu/ xenial/universe r-bioc-genomeinfodb all 1.6.0-1 [19.1 MB] Get:162 http://ftpmaster.internal/ubuntu/ xenial/universe r-cran-bitops s390x 1.0-6-1 [21.6 kB] Get:163 http://ftpmaster.internal/ubuntu/ xenial/universe r-bioc-genomicranges s390x 1.22.0-1 [1477 kB] Get:164 http://ftpmaster.internal/ubuntu/ xenial/universe r-bioc-rsamtools s390x 1.22.0-1 [3226 kB] Get:165 http://ftpmaster.internal/ubuntu/ xenial/universe r-bioc-summarizedexperiment all 1.0.0-1 [1284 kB] Get:166 http://ftpmaster.internal/ubuntu/ xenial/universe r-bioc-genomicalignments s390x 1.6.1-1 [1298 kB] Get:167 http://ftpmaster.internal/ubuntu/ xenial/universe r-cran-rcurl s390x 1.95-4.7-1 [609 kB] Get:168 http://ftpmaster.internal/ubuntu/ xenial/universe r-cran-xml s390x 3.98-1.3-1 [1629 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 132 MB in 1min 11s (1861 kB/s) Selecting previously unselected package libasprintf0v5:s390x. 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Setting up ucf (3.0031) ... Setting up fontconfig-config (2.11.1-0ubuntu6) ... Setting up libexpat1:s390x (2.1.0-7) ... Setting up libfreetype6:s390x (2.5.2-4ubuntu2) ... Setting up libfontconfig1:s390x (2.11.1-0ubuntu6) ... Setting up fontconfig (2.11.1-0ubuntu6) ... Regenerating fonts cache... done. Setting up libjpeg-turbo8:s390x (1.3.0-0ubuntu2) ... Setting up libpcrecpp0v5:s390x (2:8.35-7.1ubuntu1) ... Setting up mime-support (3.59ubuntu1) ... Setting up libpython2.7-stdlib:s390x (2.7.10-4ubuntu2) ... Setting up python2.7 (2.7.10-4ubuntu2) ... Setting up libpython-stdlib:s390x (2.7.9-1) ... Setting up python (2.7.9-1) ... Setting up libmagic1:s390x (1:5.25-2ubuntu1) ... Setting up file (1:5.25-2ubuntu1) ... Setting up netbase (5.3) ... Setting up gettext-base (0.19.4-1ubuntu3) ... Setting up libglib2.0-0:s390x (2.47.3-3) ... No schema files found: doing nothing. Setting up libicu55:s390x (55.1-6ubuntu1) ... Setting up libxau6:s390x (1:1.0.8-1) ... Setting up libxdmcp6:s390x (1:1.1.2-1.1) ... Setting up libxcb1:s390x (1.11.1-1ubuntu1) ... Setting up libx11-data (2:1.6.3-1ubuntu2) ... Setting up libx11-6:s390x (2:1.6.3-1ubuntu2) ... Setting up libxext6:s390x (2:1.3.3-1) ... Setting up libxml2:s390x (2.9.2+zdfsg1-4ubuntu1) ... Setting up libsigsegv2:s390x (2.10-4) ... Setting up m4 (1.4.17-4) ... Setting up autoconf (2.69-9) ... Setting up autotools-dev (20150820.1) ... Setting up automake (1:1.15-1ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up libcroco3:s390x (0.6.9-1) ... Setting up libunistring0:s390x (0.9.3-5.2ubuntu1) ... Setting up gettext (0.19.4-1ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up po-debconf (1.0.18) ... Setting up libarchive-zip-perl (1.53-1) ... Setting up libfile-stripnondeterminism-perl (0.014-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up liburi-perl (1.69-1) ... 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Setting up gfortran (4:5.2.1-16ubuntu2) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libblas-common (1.2.20110419-11) ... Setting up libblas3 (1.2.20110419-11) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up libblas-dev (1.2.20110419-11) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode Setting up libbz2-dev:s390x (1.0.6-8) ... Setting up libpixman-1-0:s390x (0.33.4-1) ... Setting up libxcb-render0:s390x (1.11.1-1ubuntu1) ... Setting up libxcb-shm0:s390x (1.11.1-1ubuntu1) ... Setting up libxrender1:s390x (1:0.9.9-0ubuntu1) ... Setting up libcairo2:s390x (1.14.4-1) ... Setting up libcurl3:s390x (7.45.0-1ubuntu1) ... Setting up libdatrie1:s390x (0.2.10-1) ... Setting up libgraphite2-3:s390x (1.2.4-3ubuntu1) ... Setting up libharfbuzz0b:s390x (1.0.1-1build2) ... Setting up x11-common (1:7.7+12ubuntu1) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:s390x (2:1.0.9-1) ... Setting up libjpeg-turbo8-dev:s390x (1.3.0-0ubuntu2) ... Setting up libjpeg8:s390x (8c-2ubuntu8) ... Setting up libjpeg8-dev:s390x (8c-2ubuntu8) ... Setting up libjpeg-dev:s390x (8c-2ubuntu8) ... Setting up liblapack3 (3.5.0-5) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up liblapack-dev (3.5.0-5) ... update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode Setting up libtinfo-dev:s390x (6.0+20151024-2ubuntu1) ... Setting up libncurses5-dev:s390x (6.0+20151024-2ubuntu1) ... Setting up libthai-data (0.1.24-1) ... Setting up libthai0:s390x (0.1.24-1) ... Setting up libpango-1.0-0:s390x (1.38.1-1) ... Setting up libpangoft2-1.0-0:s390x (1.38.1-1) ... Setting up libpangocairo-1.0-0:s390x (1.38.1-1) ... Setting up libpaper1:s390x (1.1.24+nmu4ubuntu1) ... Creating config file /etc/papersize with new version Setting up libpaper-utils (1.1.24+nmu4ubuntu1) ... Setting up libpcre16-3:s390x (2:8.35-7.1ubuntu1) ... Setting up libpcre32-3:s390x (2:8.35-7.1ubuntu1) ... Setting up libpcre3-dev:s390x (2:8.35-7.1ubuntu1) ... Setting up zlib1g-dev:s390x (1:1.2.8.dfsg-2ubuntu4) ... Setting up libpng12-dev:s390x (1.2.54-1) ... Setting up libreadline6-dev:s390x (6.3-8ubuntu1) ... Setting up libreadline-dev:s390x (6.3-8ubuntu1) ... Setting up libsm6:s390x (2:1.2.2-1) ... Setting up libtcl8.6:s390x (8.6.4+dfsg-2ubuntu1) ... Setting up libjbig0:s390x (2.1-3.1) ... Setting up libtiff5:s390x (4.0.5-1) ... Setting up libxft2:s390x (2.3.2-1) ... Setting up libxss1:s390x (1:1.2.2-1) ... Setting up libtk8.6:s390x (8.6.4+dfsg-2ubuntu1) ... Setting up libxt6:s390x (1:1.1.5-0ubuntu1) ... Setting up zip (3.0-11) ... Setting up unzip (6.0-20ubuntu1) ... Setting up xdg-utils (1.1.0~rc3+git20150907-1ubuntu3) ... Setting up r-base-core (3.2.2.20151203-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-littler (0.3.0-2) ... Setting up littler (0.3.0-2) ... Setting up liblzma-dev:s390x (5.1.1alpha+20120614-2ubuntu2) ... Setting up r-bioc-biocgenerics (0.16.0-1) ... Setting up r-bioc-biobase (2.30.0-1) ... Setting up r-cran-checkmate (1.6.0-1) ... Setting up r-cran-bbmisc (1.9-1) ... Setting up r-cran-brew (1.0-6-1) ... Setting up r-cran-digest (0.6.8-1) ... Setting up r-cran-dbi (0.3.1-1) ... Setting up r-cran-rsqlite (1.0.0-2) ... Setting up r-cran-pkgkitten (0.1.3-1) ... Setting up r-cran-rcpp (0.12.2-1) ... Setting up r-cran-plyr (1.8.3-1) ... Setting up r-cran-magrittr (1.5-1) ... Setting up r-cran-stringi (1.0-1-1) ... Setting up r-cran-stringr (1.0.0-1) ... Setting up r-cran-base64enc (0.1-2-1) ... Setting up r-cran-sendmailr (1.2-1-1) ... Setting up r-cran-fail (1.3-1) ... Setting up r-cran-batchjobs (1.6-1) ... Setting up r-cran-codetools (0.2-14-1) ... Setting up r-cran-iterators (1.0.8-1) ... Setting up r-cran-foreach (1.4.3-1) ... Setting up r-cran-lambda.r (1.1.7-2) ... Setting up r-cran-futile.options (1.0.0-2) ... Setting up r-cran-futile.logger (1.4.1-1) ... Setting up r-cran-snow (1:0.4.1-1) ... Setting up r-bioc-biocparallel (1.4.0-1) ... Setting up r-bioc-s4vectors (0.8.0-1) ... Setting up r-bioc-iranges (2.4.1-1) ... Setting up r-bioc-xvector (0.10.0-1) ... Setting up r-bioc-biostrings (2.38.0-1) ... Setting up r-bioc-genomeinfodb (1.6.0-1) ... Setting up r-cran-bitops (1.0-6-1) ... Setting up r-bioc-genomicranges (1.22.0-1) ... Setting up r-bioc-rsamtools (1.22.0-1) ... Setting up r-bioc-summarizedexperiment (1.0.0-1) ... Setting up r-bioc-genomicalignments (1.6.1-1) ... Setting up r-cran-rcurl (1.95-4.7-1) ... Setting up r-cran-xml (3.98-1.3-1) ... Setting up debhelper (9.20151126ubuntu1) ... Setting up libwww-perl (6.15-1) ... Setting up libxml-parser-perl (2.44-1) ... Setting up intltool (0.51.0-1) ... Setting up dh-translations (125) ... Setting up cdbs (0.4.130ubuntu2) ... Setting up r-base-dev (3.2.2.20151203-1) ... Setting up sbuild-build-depends-r-bioc-rtracklayer-dummy (0.invalid.0) ... Setting up dh-strip-nondeterminism (0.014-1) ... Setting up liblwp-protocol-https-perl (6.06-2) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Processing triggers for systemd (228-2ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.3.0-0-generic s390x (s390x) Toolchain package versions: binutils_2.25.90.20151125-2ubuntu1 dpkg-dev_1.18.3ubuntu1 g++-5_5.3.1-3ubuntu1 gcc-5_5.3.1-3ubuntu1 libc6-dev_2.21-0ubuntu5 libstdc++-5-dev_5.3.1-3ubuntu1 libstdc++6_5.3.1-3ubuntu1 linux-libc-dev_4.3.0-2.11 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.20-1 apt_1.0.10.2ubuntu1 apt-transport-https_1.0.10.2ubuntu1 autoconf_2.69-9 automake_1:1.15-1ubuntu1 autotools-dev_20150820.1 base-files_9.4ubuntu3 base-passwd_3.5.38 bash_4.3-14ubuntu1 binutils_2.25.90.20151125-2ubuntu1 bsdmainutils_9.0.6ubuntu1 bsdutils_1:2.27.1-1ubuntu3 build-essential_12.1ubuntu2 bzip2_1.0.6-8 ca-certificates_20150426ubuntu1 cdbs_0.4.130ubuntu2 coreutils_8.23-4ubuntu2 cpp_4:5.2.1-16ubuntu2 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lockfile-progs_0.1.17 login_1:4.1.5.1-1.1ubuntu7 lsb-base_9.20150917ubuntu1 m4_1.4.17-4 make_4.0-8.2 man-db_2.7.5-1 mawk_1.3.3-17ubuntu2 mime-support_3.59ubuntu1 mount_2.27.1-1ubuntu3 multiarch-support_2.21-0ubuntu5 ncurses-base_6.0+20151024-2ubuntu1 ncurses-bin_6.0+20151024-2ubuntu1 netbase_5.3 openssl_1.0.2e-1ubuntu1 optipng_0.7.5-1 passwd_1:4.1.5.1-1.1ubuntu7 patch_2.7.5-1 perl_5.20.2-6 perl-base_5.20.2-6 perl-modules_5.20.2-6 pkg-create-dbgsym_0.70 pkgbinarymangler_125 po-debconf_1.0.18 policyrcd-script-zg2_0.1-2 procps_2:3.3.10-4ubuntu1 python_2.7.9-1 python-minimal_2.7.9-1 python-scour_0.26-3ubuntu1 python2.7_2.7.10-4ubuntu2 python2.7-minimal_2.7.10-4ubuntu2 r-base-core_3.2.2.20151203-1 r-base-dev_3.2.2.20151203-1 r-bioc-biobase_2.30.0-1 r-bioc-biocgenerics_0.16.0-1 r-bioc-biocparallel_1.4.0-1 r-bioc-biostrings_2.38.0-1 r-bioc-genomeinfodb_1.6.0-1 r-bioc-genomicalignments_1.6.1-1 r-bioc-genomicranges_1.22.0-1 r-bioc-iranges_2.4.1-1 r-bioc-rsamtools_1.22.0-1 r-bioc-s4vectors_0.8.0-1 r-bioc-summarizedexperiment_1.0.0-1 r-bioc-xvector_0.10.0-1 r-cran-base64enc_0.1-2-1 r-cran-batchjobs_1.6-1 r-cran-bbmisc_1.9-1 r-cran-bitops_1.0-6-1 r-cran-brew_1.0-6-1 r-cran-checkmate_1.6.0-1 r-cran-codetools_0.2-14-1 r-cran-dbi_0.3.1-1 r-cran-digest_0.6.8-1 r-cran-fail_1.3-1 r-cran-foreach_1.4.3-1 r-cran-futile.logger_1.4.1-1 r-cran-futile.options_1.0.0-2 r-cran-iterators_1.0.8-1 r-cran-lambda.r_1.1.7-2 r-cran-littler_0.3.0-2 r-cran-magrittr_1.5-1 r-cran-pkgkitten_0.1.3-1 r-cran-plyr_1.8.3-1 r-cran-rcpp_0.12.2-1 r-cran-rcurl_1.95-4.7-1 r-cran-rsqlite_1.0.0-2 r-cran-sendmailr_1.2-1-1 r-cran-snow_1:0.4.1-1 r-cran-stringi_1.0-1-1 r-cran-stringr_1.0.0-1 r-cran-xml_3.98-1.3-1 readline-common_6.3-8ubuntu1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-rtracklayer-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 systemd_228-2ubuntu1 systemd-sysv_228-2ubuntu1 sysv-rc_2.88dsf-59.2ubuntu3 sysvinit-utils_2.88dsf-59.2ubuntu3 tar_1.28-2.1 tzdata_2015g-1 ubuntu-keyring_2012.05.19 ucf_3.0031 udev_228-2ubuntu1 unzip_6.0-20ubuntu1 util-linux_2.27.1-1ubuntu3 x11-common_1:7.7+12ubuntu1 xdg-utils_1.1.0~rc3+git20150907-1ubuntu3 xz-utils_5.1.1alpha+20120614-2ubuntu2 zip_3.0-11 zlib1g_1:1.2.8.dfsg-2ubuntu4 zlib1g-dev_1:1.2.8.dfsg-2ubuntu4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Fri Nov 6 10:50:41 2015 UTC using RSA key ID D1C646D1 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./r-bioc-rtracklayer_1.30.1-1.dsc dpkg-source: info: extracting r-bioc-rtracklayer in r-bioc-rtracklayer-1.30.1 dpkg-source: info: unpacking r-bioc-rtracklayer_1.30.1.orig.tar.gz dpkg-source: info: unpacking r-bioc-rtracklayer_1.30.1-1.debian.tar.xz dpkg-source: info: applying use_debian_packaged_zlib.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/<> SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /<> su buildd -s /bin/sh -c cd '/<>' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ----------------- dpkg-buildpackage: source package r-bioc-rtracklayer dpkg-buildpackage: source version 1.30.1-1 dpkg-buildpackage: source distribution unstable dpkg-source --before-build r-bioc-rtracklayer-1.30.1 dpkg-buildpackage: host architecture s390x fakeroot debian/rules clean test -x debian/rules dh_clean if test -d src; then \ find src -regex ".*\.o" | \ xargs --no-run-if-empty -r rm; \ fi rm -f config.log config.status debian/rules build-arch test -x debian/rules mkdir -p "." fakeroot debian/rules binary-arch test -x debian/rules dh_testroot dh_prep dh_installdirs -A mkdir -p "." dh_installdirs usr/lib/R/site-library echo "R:Depends=r-base-core (>= 3.2.2.20151203-1), r-api-3" >> debian/r-bioc-rtracklayer.substvars if test -f /usr/bin/xvfb-run; then \ xvfb-run -a \ R CMD INSTALL -l /<>/debian/r-bioc-rtracklayer/usr/lib/R/site-library --clean \ . \ "--built-timestamp=\"Fri, 06 Nov 2015 09:01:53 +0100\"" \ ; \ else \ R CMD INSTALL -l /<>/debian/r-bioc-rtracklayer/usr/lib/R/site-library \ --clean . \ "--built-timestamp=\"Fri, 06 Nov 2015 09:01:53 +0100\"" \ ; \ fi * installing *source* package 'rtracklayer' ... ** libs make[1]: Entering directory '/<>/src' gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c S4Vectors_stubs.c -o S4Vectors_stubs.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c IRanges_stubs.c -o IRanges_stubs.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c XVector_stubs.c -o XVector_stubs.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c R_init_rtracklayer.c -o R_init_rtracklayer.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c readGFF.c -o readGFF.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bigWig.c -o bigWig.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c chain_io.c -o chain_io.o chain_io.c: In function 'read_chain_file': chain_io.c:119:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(linebuf, LINEBUF_SIZE, stream); /* skip empty line */ ^ gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c twoBit.c -o twoBit.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c handlers.c -o handlers.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ucsc/bPlusTree.c -o ucsc/bPlusTree.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ucsc/bbiRead.c -o ucsc/bbiRead.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ucsc/bbiWrite.c -o ucsc/bbiWrite.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ucsc/bwgCreate.c -o ucsc/bwgCreate.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ucsc/bwgQuery.c -o ucsc/bwgQuery.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ucsc/cirTree.c -o ucsc/cirTree.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ucsc/common.c -o ucsc/common.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ucsc/dnaseq.c -o ucsc/dnaseq.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ucsc/dnautil.c -o ucsc/dnautil.o ucsc/dnautil.c: In function 'reverseComplementSlashSeparated': ucsc/dnautil.c:496:9: warning: implicit declaration of function 'isAllNt' [-Wimplicit-function-declaration] if (isAllNt(allele, alLen)) ^ gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ucsc/errAbort.c -o ucsc/errAbort.o ucsc/errAbort.c: In function 'getThreadVars': ucsc/errAbort.c:331:5: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result] write(STDERR_FILENO, errMsg, strlen(errMsg)); ^ gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ucsc/hash.c -o ucsc/hash.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ucsc/linefile.c -o ucsc/linefile.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ucsc/localmem.c -o ucsc/localmem.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ucsc/sqlNum.c -o ucsc/sqlNum.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ucsc/zlibFace.c -o ucsc/zlibFace.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ucsc/dystring.c -o ucsc/dystring.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ucsc/hmmstats.c -o ucsc/hmmstats.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ucsc/obscure.c -o ucsc/obscure.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ucsc/pipeline.c -o ucsc/pipeline.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ucsc/rangeTree.c -o ucsc/rangeTree.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ucsc/rbTree.c -o ucsc/rbTree.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ucsc/memalloc.c -o ucsc/memalloc.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ucsc/dlist.c -o ucsc/dlist.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ucsc/udc.c -o ucsc/udc.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ucsc/net.c -o ucsc/net.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ucsc/bits.c -o ucsc/bits.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ucsc/twoBit.c -o ucsc/twoBit.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ucsc/_cheapcgi.c -o ucsc/_cheapcgi.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ucsc/internet.c -o ucsc/internet.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ucsc/https.c -o ucsc/https.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ucsc/base64.c -o ucsc/base64.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ucsc/verbose.c -o ucsc/verbose.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ucsc/os.c -o ucsc/os.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ucsc/wildcmp.c -o ucsc/wildcmp.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -g -fPIC -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ucsc/_portimpl.c -o ucsc/_portimpl.o gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o rtracklayer.so S4Vectors_stubs.o IRanges_stubs.o XVector_stubs.o R_init_rtracklayer.o readGFF.o bigWig.o chain_io.o twoBit.o handlers.o utils.o ucsc/bPlusTree.o ucsc/bbiRead.o ucsc/bbiWrite.o ucsc/bwgCreate.o ucsc/bwgQuery.o ucsc/cirTree.o ucsc/common.o ucsc/dnaseq.o ucsc/dnautil.o ucsc/errAbort.o ucsc/hash.o ucsc/linefile.o ucsc/localmem.o ucsc/sqlNum.o ucsc/zlibFace.o ucsc/dystring.o ucsc/hmmstats.o ucsc/obscure.o ucsc/pipeline.o ucsc/rangeTree.o ucsc/rbTree.o ucsc/memalloc.o ucsc/dlist.o ucsc/udc.o ucsc/net.o ucsc/bits.o ucsc/twoBit.o ucsc/_cheapcgi.o ucsc/internet.o ucsc/https.o ucsc/base64.o ucsc/verbose.o ucsc/os.o ucsc/wildcmp.o ucsc/_portimpl.o -lz -pthread -L/usr/lib/R/lib -lR make[1]: Leaving directory '/<>/src' make[1]: Entering directory '/<>/src' make[1]: Leaving directory '/<>/src' installing to /<>/debian/r-bioc-rtracklayer/usr/lib/R/site-library/rtracklayer/libs ** R ** data ** demo ** inst ** preparing package for lazy loading Creating a generic function for 'offset' from package 'stats' in package 'rtracklayer' Creating a generic function from function 'uri' in package 'rtracklayer' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (rtracklayer) rm -vf /<>/debian/r-bioc-rtracklayer/usr/lib/R/site-library/R.css \ /<>/debian/r-bioc-rtracklayer/usr/lib/R/site-library/rtracklayer/COPYING \ /<>/debian/r-bioc-rtracklayer/usr/lib/R/site-library/rtracklayer/LICENSE.txt if test -f debian/overrides; then \ install -d /<>/debian/r-bioc-rtracklayer/usr/share/lintian/overrides ; \ install -m 0644 debian/overrides \ /<>/debian/r-bioc-rtracklayer/usr/share/lintian/overrides/r-bioc-rtracklayer; \ fi Adding cdbs dependencies to debian/r-bioc-rtracklayer.substvars dh_installdirs -pr-bioc-rtracklayer dh_installdocs -pr-bioc-rtracklayer ./NEWS ./TODO dh_installexamples -pr-bioc-rtracklayer dh_installman -pr-bioc-rtracklayer dh_installinfo -pr-bioc-rtracklayer dh_installmenu -pr-bioc-rtracklayer dh_installcron -pr-bioc-rtracklayer dh_installinit -pr-bioc-rtracklayer dh_installdebconf -pr-bioc-rtracklayer dh_installemacsen -pr-bioc-rtracklayer dh_installcatalogs -pr-bioc-rtracklayer dh_installpam -pr-bioc-rtracklayer dh_installlogrotate -pr-bioc-rtracklayer dh_installlogcheck -pr-bioc-rtracklayer dh_installchangelogs -pr-bioc-rtracklayer dh_installudev -pr-bioc-rtracklayer dh_lintian -pr-bioc-rtracklayer dh_bugfiles -pr-bioc-rtracklayer dh_install -pr-bioc-rtracklayer dh_link -pr-bioc-rtracklayer dh_installmime -pr-bioc-rtracklayer dh_installgsettings -pr-bioc-rtracklayer dh_strip -pr-bioc-rtracklayer dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform s390x: r-bioc-rtracklayer dh_strip debug symbol extraction: packages to act on: r-bioc-rtracklayer dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: -is is deprecated; it is without effect dpkg-gencontrol: warning: -ip is deprecated; it is without effect dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package r-bioc-rtracklayer: unused substitution variable ${R:Depends} /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol dh_compress -pr-bioc-rtracklayer dh_fixperms -pr-bioc-rtracklayer dh_makeshlibs -pr-bioc-rtracklayer dh_installdeb -pr-bioc-rtracklayer dh_perl -pr-bioc-rtracklayer dh_shlibdeps -pr-bioc-rtracklayer dh_gencontrol -pr-bioc-rtracklayer dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform s390x: r-bioc-rtracklayer dh_gencontrol debug symbol wrapper: packages to act on: r-bioc-rtracklayer dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: processing package r-bioc-rtracklayer (pkgdir debian/r-bioc-rtracklayer, ddeb package dir debian/r-bioc-rtracklayer-dbgsym) dh_gencontrol debug symbol wrapper: building r-bioc-rtracklayer-dbgsym_1.30.1-1_s390x.ddeb dpkg-deb: building package 'r-bioc-rtracklayer-dbgsym' in '../r-bioc-rtracklayer-dbgsym_1.30.1-1_s390x.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile r-bioc-rtracklayer-dbgsym_1.30.1-1_s390x.ddeb gnu-r extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe # only call dh_scour for packages in main if grep -q '^Component:[[:space:]]*main' /CurrentlyBuilding 2>/dev/null; then dh_scour -pr-bioc-rtracklayer ; fi dh_md5sums -pr-bioc-rtracklayer dh_builddeb -pr-bioc-rtracklayer INFO: pkgstriptranslations version 125 pkgstriptranslations: processing r-bioc-rtracklayer (in debian/r-bioc-rtracklayer); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-bioc-rtracklayer/DEBIAN/control, package r-bioc-rtracklayer, directory debian/r-bioc-rtracklayer DEBUG: wait r-bioc-rtracklayer 1:r-bioc-rtracklayer DEBUG: clear r-bioc-rtracklayer 1:r-bioc-rtracklayer DEBUG: done r-bioc-rtracklayer pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-bioc-rtracklayer ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-bioc-rtracklayer' in '../r-bioc-rtracklayer_1.30.1-1_s390x.deb'. dpkg-genchanges -B -mLaunchpad Build Daemon >../r-bioc-rtracklayer_1.30.1-1_s390x.changes dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build r-bioc-rtracklayer-1.30.1 dpkg-buildpackage: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20151210-0703 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-bioc-rtracklayer_1.30.1-1_s390x.changes: ------------------------------------------ Format: 1.8 Date: Fri, 06 Nov 2015 09:01:53 +0100 Source: r-bioc-rtracklayer Binary: r-bioc-rtracklayer Architecture: s390x Version: 1.30.1-1 Distribution: xenial Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: r-bioc-rtracklayer - GNU R interface to genome browsers and their annotation tracks Changes: r-bioc-rtracklayer (1.30.1-1) unstable; urgency=medium . * New upstream version Checksums-Sha1: 985b1add23d5ec7e034fe696c8bdd1766d69dfd9 267094 r-bioc-rtracklayer-dbgsym_1.30.1-1_s390x.ddeb 9ae0a85ca5c3080d2b4ab2896a53aed702addcaf 1793414 r-bioc-rtracklayer_1.30.1-1_s390x.deb Checksums-Sha256: 9ee457a448fc1223ca1af3c458b272f0b2169647b6b9a817bc39f7d792423826 267094 r-bioc-rtracklayer-dbgsym_1.30.1-1_s390x.ddeb 493acef3e2d4b8a515f71194a99f187f0add003da15b2fee99603ba5be844ff8 1793414 r-bioc-rtracklayer_1.30.1-1_s390x.deb Files: af3b403e088055fc537aef0a0da851e3 267094 gnu-r extra r-bioc-rtracklayer-dbgsym_1.30.1-1_s390x.ddeb b73d4246abbc1dcc4b5c2ce279665561 1793414 gnu-r optional r-bioc-rtracklayer_1.30.1-1_s390x.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-bioc-rtracklayer_1.30.1-1_s390x.deb ------------------------------------- new debian package, version 2.0. size 1793414 bytes: control archive=2954 bytes. 958 bytes, 17 lines control 6520 bytes, 74 lines md5sums Package: r-bioc-rtracklayer Version: 1.30.1-1 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 2699 Depends: r-base-core (>= 3.2.2.20151203-1), r-api-3, libc6 (>= 2.15), zlib1g (>= 1:1.1.4), r-cran-xml, r-cran-rcurl, r-bioc-genomicalignments (>= 1.6.0) Section: gnu-r Priority: optional Homepage: http://bioconductor.org/packages/release/bioc/html/rtracklayer.html Description: GNU R interface to genome browsers and their annotation tracks Extensible framework for interacting with multiple genome browsers (currently UCSC built-in) and manipulating annotation tracks in various formats (currently GFF, BED, bedGraph, BED15, WIG, BigWig and 2bit built-in). 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as requested Keeping session: +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build-Space: 8308 Build-Time: 21 Distribution: xenial Host Architecture: s390x Install-Time: 98 Job: r-bioc-rtracklayer_1.30.1-1.dsc Machine Architecture: s390x Package: r-bioc-rtracklayer Package-Time: 120 Source-Version: 1.30.1-1 Space: 8308 Status: successful Version: 1.30.1-1 -------------------------------------------------------------------------------- Finished at 20151210-0703 Build needed 00:02:00, 8308k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-8381089'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-8381089/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-8381089'] Unmounting chroot for build PACKAGEBUILD-8381089... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-8381089'] Removing build PACKAGEBUILD-8381089