RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lgw01-amd64-019 4.4.0-97-generic #120-Ubuntu SMP Tue Sep 19 17:28:18 UTC 2017 x86_64 Buildd toolchain package versions: launchpad-buildd_152 python-lpbuildd_152 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.2 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 13 Oct 08:23:18 ntpdate[1791]: adjust time server 10.211.37.1 offset 0.025726 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=artful --arch=amd64 PACKAGEBUILD-13574183 /home/buildd/filecache-default/f027e517e95d0e91684230ee23be60d709f816c0 Creating target for build PACKAGEBUILD-13574183 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=artful --arch=amd64 PACKAGEBUILD-13574183 Starting target for build PACKAGEBUILD-13574183 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=artful --arch=amd64 PACKAGEBUILD-13574183 'deb http://ftpmaster.internal/ubuntu artful main universe' 'deb http://ftpmaster.internal/ubuntu artful-security main universe' 'deb http://ftpmaster.internal/ubuntu artful-updates main universe' 'deb http://ftpmaster.internal/ubuntu artful-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-13574183 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=artful --arch=amd64 PACKAGEBUILD-13574183 Updating target for build PACKAGEBUILD-13574183 Get:1 http://ftpmaster.internal/ubuntu artful InRelease [237 kB] Get:2 http://ftpmaster.internal/ubuntu artful-security InRelease [65.5 kB] Get:3 http://ftpmaster.internal/ubuntu artful-updates InRelease [65.5 kB] Get:4 http://ftpmaster.internal/ubuntu artful-proposed InRelease [235 kB] Get:5 http://ftpmaster.internal/ubuntu artful/main amd64 Packages [1074 kB] Get:6 http://ftpmaster.internal/ubuntu artful/main Translation-en [542 kB] Get:7 http://ftpmaster.internal/ubuntu artful/universe amd64 Packages [8101 kB] Get:8 http://ftpmaster.internal/ubuntu artful/universe Translation-en [4789 kB] Get:9 http://ftpmaster.internal/ubuntu artful-proposed/main amd64 Packages [52.3 kB] Get:10 http://ftpmaster.internal/ubuntu artful-proposed/main Translation-en [24.6 kB] Get:11 http://ftpmaster.internal/ubuntu artful-proposed/universe amd64 Packages [56.9 kB] Get:12 http://ftpmaster.internal/ubuntu artful-proposed/universe Translation-en [35.1 kB] Fetched 15.3 MB in 3s (4718 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libustr-1.0-1 Use 'sudo apt autoremove' to remove it. The following packages will be upgraded: apt apt-transport-https binutils binutils-common binutils-x86-64-linux-gnu build-essential coreutils cpp-7 g++-7 gcc-7 gcc-7-base gnupg gnupg-agent gpgv libapt-pkg5.0 libasan4 libatomic1 libbinutils libc-bin libc-dev-bin libc6 libc6-dev libcap2 libcc1-0 libcilkrts5 libcurl3-gnutls libgcc-7-dev libgcc1 libgomp1 libhogweed4 libitm1 liblsan0 libmpx2 libnettle6 libpcre3 libpng16-16 libquadmath0 libseccomp2 libsemanage-common libsemanage1 libstdc++-7-dev libstdc++6 libsystemd0 libtsan0 libubsan0 libudev1 linux-libc-dev multiarch-support systemd systemd-sysv 50 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 45.1 MB of archives. After this operation, 186 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu artful/main amd64 coreutils amd64 8.26-3ubuntu4 [1213 kB] Get:2 http://ftpmaster.internal/ubuntu artful-proposed/main amd64 libc6-dev amd64 2.26-0ubuntu2 [2524 kB] Get:3 http://ftpmaster.internal/ubuntu artful-proposed/main amd64 libc-dev-bin amd64 2.26-0ubuntu2 [69.6 kB] Get:4 http://ftpmaster.internal/ubuntu artful-proposed/main amd64 linux-libc-dev amd64 4.13.0-16.19 [954 kB] Get:5 http://ftpmaster.internal/ubuntu artful/main amd64 libquadmath0 amd64 7.2.0-8ubuntu2 [132 kB] Get:6 http://ftpmaster.internal/ubuntu artful/main amd64 libitm1 amd64 7.2.0-8ubuntu2 [27.6 kB] Get:7 http://ftpmaster.internal/ubuntu artful/main amd64 gcc-7-base amd64 7.2.0-8ubuntu2 [17.9 kB] Get:8 http://ftpmaster.internal/ubuntu artful/main amd64 libgcc1 amd64 1:7.2.0-8ubuntu2 [39.3 kB] Get:9 http://ftpmaster.internal/ubuntu artful/main amd64 libmpx2 amd64 7.2.0-8ubuntu2 [11.7 kB] Get:10 http://ftpmaster.internal/ubuntu artful/main amd64 libgomp1 amd64 7.2.0-8ubuntu2 [76.4 kB] Get:11 http://ftpmaster.internal/ubuntu artful/main amd64 libatomic1 amd64 7.2.0-8ubuntu2 [8956 B] Get:12 http://ftpmaster.internal/ubuntu artful/main amd64 libasan4 amd64 7.2.0-8ubuntu2 [360 kB] Get:13 http://ftpmaster.internal/ubuntu artful/main amd64 liblsan0 amd64 7.2.0-8ubuntu2 [133 kB] Get:14 http://ftpmaster.internal/ubuntu artful/main amd64 libtsan0 amd64 7.2.0-8ubuntu2 [283 kB] Get:15 http://ftpmaster.internal/ubuntu artful/main amd64 libubsan0 amd64 7.2.0-8ubuntu2 [126 kB] Get:16 http://ftpmaster.internal/ubuntu artful/main amd64 libcilkrts5 amd64 7.2.0-8ubuntu2 [42.5 kB] Get:17 http://ftpmaster.internal/ubuntu artful/main amd64 cpp-7 amd64 7.2.0-8ubuntu2 [6727 kB] Get:18 http://ftpmaster.internal/ubuntu artful/main amd64 libcc1-0 amd64 7.2.0-8ubuntu2 [38.6 kB] Get:19 http://ftpmaster.internal/ubuntu artful/main amd64 g++-7 amd64 7.2.0-8ubuntu2 [7552 kB] Get:20 http://ftpmaster.internal/ubuntu artful/main amd64 gcc-7 amd64 7.2.0-8ubuntu2 [7413 kB] Get:21 http://ftpmaster.internal/ubuntu artful/main amd64 libgcc-7-dev amd64 7.2.0-8ubuntu2 [2378 kB] Get:22 http://ftpmaster.internal/ubuntu artful/main amd64 libstdc++-7-dev amd64 7.2.0-8ubuntu2 [1456 kB] Get:23 http://ftpmaster.internal/ubuntu artful/main amd64 libstdc++6 amd64 7.2.0-8ubuntu2 [404 kB] Get:24 http://ftpmaster.internal/ubuntu artful/main amd64 libbinutils amd64 2.29.1-4ubuntu1 [502 kB] Get:25 http://ftpmaster.internal/ubuntu artful/main amd64 binutils amd64 2.29.1-4ubuntu1 [3342 B] Get:26 http://ftpmaster.internal/ubuntu artful/main amd64 binutils-common amd64 2.29.1-4ubuntu1 [190 kB] Get:27 http://ftpmaster.internal/ubuntu artful/main amd64 binutils-x86-64-linux-gnu amd64 2.29.1-4ubuntu1 [1824 kB] Get:28 http://ftpmaster.internal/ubuntu artful-proposed/main amd64 libc6 amd64 2.26-0ubuntu2 [2778 kB] Get:29 http://ftpmaster.internal/ubuntu artful-proposed/main amd64 libc-bin amd64 2.26-0ubuntu2 [593 kB] Get:30 http://ftpmaster.internal/ubuntu artful/main amd64 libudev1 amd64 234-2ubuntu12 [51.7 kB] Get:31 http://ftpmaster.internal/ubuntu artful/main amd64 libapt-pkg5.0 amd64 1.5 [781 kB] Get:32 http://ftpmaster.internal/ubuntu artful-proposed/main amd64 gpgv amd64 2.1.15-1ubuntu8 [186 kB] Get:33 http://ftpmaster.internal/ubuntu artful/main amd64 apt amd64 1.5 [1120 kB] Get:34 http://ftpmaster.internal/ubuntu artful-proposed/main amd64 libcap2 amd64 1:2.25-1.1 [13.2 kB] Get:35 http://ftpmaster.internal/ubuntu artful/main amd64 libseccomp2 amd64 2.3.1-2.1ubuntu3 [37.3 kB] Get:36 http://ftpmaster.internal/ubuntu artful/main amd64 systemd amd64 234-2ubuntu12 [2780 kB] Get:37 http://ftpmaster.internal/ubuntu artful/main amd64 libsystemd0 amd64 234-2ubuntu12 [208 kB] Get:38 http://ftpmaster.internal/ubuntu artful/main amd64 systemd-sysv amd64 234-2ubuntu12 [10.8 kB] Get:39 http://ftpmaster.internal/ubuntu artful/main amd64 libpcre3 amd64 2:8.39-5ubuntu3 [229 kB] Get:40 http://ftpmaster.internal/ubuntu artful/main amd64 libsemanage-common all 2.7-2 [6916 B] Get:41 http://ftpmaster.internal/ubuntu artful/main amd64 libsemanage1 amd64 2.7-2 [84.6 kB] Get:42 http://ftpmaster.internal/ubuntu artful/main amd64 libnettle6 amd64 3.3-2 [91.7 kB] Get:43 http://ftpmaster.internal/ubuntu artful/main amd64 libhogweed4 amd64 3.3-2 [135 kB] Get:44 http://ftpmaster.internal/ubuntu artful-proposed/main amd64 gnupg amd64 2.1.15-1ubuntu8 [780 kB] Get:45 http://ftpmaster.internal/ubuntu artful-proposed/main amd64 gnupg-agent amd64 2.1.15-1ubuntu8 [255 kB] Get:46 http://ftpmaster.internal/ubuntu artful-proposed/main amd64 multiarch-support amd64 2.26-0ubuntu2 [6832 B] Get:47 http://ftpmaster.internal/ubuntu artful/main amd64 libcurl3-gnutls amd64 7.55.1-1ubuntu2 [193 kB] Get:48 http://ftpmaster.internal/ubuntu artful/main amd64 apt-transport-https amd64 1.5 [34.7 kB] Get:49 http://ftpmaster.internal/ubuntu artful/main amd64 libpng16-16 amd64 1.6.34-1 [176 kB] Get:50 http://ftpmaster.internal/ubuntu artful/main amd64 build-essential amd64 12.4ubuntu1 [4758 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 45.1 MB in 2s (15.8 MB/s) (Reading database ... 12676 files and directories currently installed.) 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Setting up apt-transport-https (1.5) ... Setting up libbinutils:amd64 (2.29.1-4ubuntu1) ... Setting up build-essential (12.4ubuntu1) ... Setting up gnupg (2.1.15-1ubuntu8) ... Setting up libgcc-7-dev:amd64 (7.2.0-8ubuntu2) ... Setting up libstdc++-7-dev:amd64 (7.2.0-8ubuntu2) ... Setting up binutils-x86-64-linux-gnu (2.29.1-4ubuntu1) ... Setting up binutils (2.29.1-4ubuntu1) ... Setting up gcc-7 (7.2.0-8ubuntu2) ... Setting up g++-7 (7.2.0-8ubuntu2) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-13574183 amd64 artful-proposed -c chroot:build-PACKAGEBUILD-13574183 --arch=amd64 --dist=artful-proposed --nolog -A r-bioc-s4vectors_0.14.7-1.dsc Initiating build PACKAGEBUILD-13574183 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-97-generic #120-Ubuntu SMP Tue Sep 19 17:28:18 UTC 2017 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-019.buildd +==============================================================================+ | r-bioc-s4vectors 0.14.7-1 (amd64) 13 Oct 2017 08:23 | +==============================================================================+ Package: r-bioc-s4vectors Version: 0.14.7-1 Source Version: 0.14.7-1 Distribution: artful-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/r-bioc-s4vectors-ESnUrK/r-bioc-s4vectors-0.14.7' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-s4vectors-ESnUrK' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-13574183/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-bioc-s4vectors_0.14.7-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-77kdZt/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-77kdZt/apt_archive ./ InRelease Get:2 copy:/<>/resolver-77kdZt/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-77kdZt/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-77kdZt/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-77kdZt/apt_archive ./ Packages [528 B] Fetched 2861 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libustr-1.0-1 Use 'apt autoremove' to remove it. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 776 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-77kdZt/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [776 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 776 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12677 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 10), r-base-dev, r-bioc-biocgenerics (>= 0.22.1), dh-r Filtered Build-Depends: debhelper (>= 10), r-base-dev, r-bioc-biocgenerics (>= 0.22.1), dh-r dpkg-deb: building package 'sbuild-build-depends-r-bioc-s4vectors-dummy' in '/<>/resolver-ERmXaP/apt_archive/sbuild-build-depends-r-bioc-s4vectors-dummy.deb'. Ign:1 copy:/<>/resolver-ERmXaP/apt_archive ./ InRelease Get:2 copy:/<>/resolver-ERmXaP/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-ERmXaP/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-ERmXaP/apt_archive ./ Sources [245 B] Get:5 copy:/<>/resolver-ERmXaP/apt_archive ./ Packages [561 B] Fetched 2925 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install r-bioc-s4vectors build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libustr-1.0-1 Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cdbs dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dh-translations file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-7 groff-base icu-devtools intltool intltool-debian libarchive-zip-perl libblas-dev libblas3 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl3 libdatrie1 libencode-locale-perl libexpat1 libfile-listing-perl libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgfortran-7-dev libgfortran4 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libicu-dev libicu57 libio-html-perl libio-socket-ssl-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic-mgc libmagic1 libncurses5-dev libnet-http-perl libnet-ssleay-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline-dev libsigsegv2 libsm6 libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev libtk8.6 libtool liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db mime-support netbase perl-openssl-defaults pkg-config po-debconf python python-minimal python-pkg-resources python-scour python-six python2.7 python2.7-minimal r-base-core r-base-dev r-bioc-biocgenerics ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation devscripts debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-7-multilib gfortran-7-doc libgfortran4-dbg libcoarrays-dev groff liblapack-doc libdata-dump-perl icu-doc libcrypt-ssleay-perl liblzma-doc ncurses-doc readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk libauthen-ntlm-perl m4-doc less www-browser libmail-box-perl python-doc python-tk python-setuptools python-rsvg python-cairo python2.7-doc binfmt-support ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo gvfs-bin Recommended packages: curl | wget | lynx-cur bzip2-doc libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libhtml-format-perl libpng-tools libltdl-dev libhtml-form-perl libhttp-daemon-perl libmailtools-perl libmail-sendmail-perl r-recommended r-doc-html libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following packages will be REMOVED: pkg-create-dbgsym* The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cdbs dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dh-translations file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-7 groff-base icu-devtools intltool intltool-debian libarchive-zip-perl libblas-dev libblas3 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl3 libdatrie1 libencode-locale-perl libexpat1 libfile-listing-perl libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgfortran-7-dev libgfortran4 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libicu-dev libicu57 libio-html-perl libio-socket-ssl-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic-mgc libmagic1 libncurses5-dev libnet-http-perl libnet-ssleay-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline-dev libsigsegv2 libsm6 libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev libtk8.6 libtool liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db mime-support netbase perl-openssl-defaults pkg-config po-debconf python python-minimal python-pkg-resources python-scour python-six python2.7 python2.7-minimal r-base-core r-base-dev r-bioc-biocgenerics sbuild-build-depends-r-bioc-s4vectors-dummy ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 141 newly installed, 1 to remove and 0 not upgraded. Need to get 83.9 MB of archives. After this operation, 299 MB of additional disk space will be used. 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[877 kB] Get:63 http://ftpmaster.internal/ubuntu artful/main amd64 liburi-perl all 1.72-1 [76.6 kB] Get:64 http://ftpmaster.internal/ubuntu artful/main amd64 libencode-locale-perl all 1.05-1 [12.3 kB] Get:65 http://ftpmaster.internal/ubuntu artful/main amd64 libhttp-date-perl all 6.02-1 [10.4 kB] Get:66 http://ftpmaster.internal/ubuntu artful/main amd64 libfile-listing-perl all 6.04-1 [9774 B] Get:67 http://ftpmaster.internal/ubuntu artful/main amd64 libhtml-tagset-perl all 3.20-3 [12.1 kB] Get:68 http://ftpmaster.internal/ubuntu artful/main amd64 libhtml-parser-perl amd64 3.72-3build1 [85.9 kB] Get:69 http://ftpmaster.internal/ubuntu artful/main amd64 libhtml-tree-perl all 5.03-2 [197 kB] Get:70 http://ftpmaster.internal/ubuntu artful/main amd64 libio-html-perl all 1.001-1 [14.9 kB] Get:71 http://ftpmaster.internal/ubuntu artful/main amd64 liblwp-mediatypes-perl all 6.02-1 [21.7 kB] Get:72 http://ftpmaster.internal/ubuntu artful/main amd64 libhttp-message-perl all 6.11-1 [74.3 kB] 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artful/main amd64 liblapack3 amd64 3.7.1-3ubuntu2 [2112 kB] Get:104 http://ftpmaster.internal/ubuntu artful/main amd64 libthai-data all 0.1.26-3 [132 kB] Get:105 http://ftpmaster.internal/ubuntu artful/main amd64 libdatrie1 amd64 0.2.10-5 [17.6 kB] Get:106 http://ftpmaster.internal/ubuntu artful/main amd64 libthai0 amd64 0.1.26-3 [17.7 kB] Get:107 http://ftpmaster.internal/ubuntu artful/main amd64 libpango-1.0-0 amd64 1.40.12-1 [152 kB] Get:108 http://ftpmaster.internal/ubuntu artful/main amd64 libgraphite2-3 amd64 1.3.10-2 [78.3 kB] Get:109 http://ftpmaster.internal/ubuntu artful/main amd64 libharfbuzz0b amd64 1.4.2-1 [211 kB] Get:110 http://ftpmaster.internal/ubuntu artful/main amd64 libpangoft2-1.0-0 amd64 1.40.12-1 [33.2 kB] Get:111 http://ftpmaster.internal/ubuntu artful/main amd64 libpangocairo-1.0-0 amd64 1.40.12-1 [20.8 kB] Get:112 http://ftpmaster.internal/ubuntu artful/main amd64 libtcl8.6 amd64 8.6.7+dfsg-1 [881 kB] Get:113 http://ftpmaster.internal/ubuntu artful/main amd64 libtiff5 amd64 4.0.8-5 [150 kB] Get:114 http://ftpmaster.internal/ubuntu artful/main amd64 libtk8.6 amd64 8.6.7-1ubuntu1 [693 kB] Get:115 http://ftpmaster.internal/ubuntu artful/main amd64 libxt6 amd64 1:1.1.5-1 [160 kB] Get:116 http://ftpmaster.internal/ubuntu artful-proposed/universe amd64 r-base-core amd64 3.4.2-1ubuntu1 [23.1 MB] Get:117 http://ftpmaster.internal/ubuntu artful/main amd64 libgfortran-7-dev amd64 7.2.0-8ubuntu2 [530 kB] Get:118 http://ftpmaster.internal/ubuntu artful/main amd64 gfortran-7 amd64 7.2.0-8ubuntu2 [7085 kB] Get:119 http://ftpmaster.internal/ubuntu artful/main amd64 gfortran amd64 4:7.2.0-1ubuntu1 [1278 B] Get:120 http://ftpmaster.internal/ubuntu artful/main amd64 libblas-dev amd64 3.7.1-3ubuntu2 [143 kB] Get:121 http://ftpmaster.internal/ubuntu artful/main amd64 liblapack-dev amd64 3.7.1-3ubuntu2 [2141 kB] Get:122 http://ftpmaster.internal/ubuntu artful/main amd64 libtinfo-dev amd64 6.0+20160625-1ubuntu1 [78.9 kB] Get:123 http://ftpmaster.internal/ubuntu artful/main amd64 libncurses5-dev amd64 6.0+20160625-1ubuntu1 [176 kB] Get:124 http://ftpmaster.internal/ubuntu artful/main amd64 libreadline-dev amd64 7.0-0ubuntu2 [132 kB] Get:125 http://ftpmaster.internal/ubuntu artful/main amd64 libjpeg-turbo8-dev amd64 1.5.2-0ubuntu5 [225 kB] Get:126 http://ftpmaster.internal/ubuntu artful/main amd64 libjpeg8-dev amd64 8c-2ubuntu8 [1552 B] Get:127 http://ftpmaster.internal/ubuntu artful/main amd64 libjpeg-dev amd64 8c-2ubuntu8 [1546 B] Get:128 http://ftpmaster.internal/ubuntu artful/main amd64 libpcre16-3 amd64 2:8.39-5ubuntu3 [147 kB] Get:129 http://ftpmaster.internal/ubuntu artful/main amd64 libpcre32-3 amd64 2:8.39-5ubuntu3 [138 kB] Get:130 http://ftpmaster.internal/ubuntu artful/main amd64 libpcrecpp0v5 amd64 2:8.39-5ubuntu3 [15.2 kB] Get:131 http://ftpmaster.internal/ubuntu artful/main amd64 libpcre3-dev amd64 2:8.39-5ubuntu3 [536 kB] Get:132 http://ftpmaster.internal/ubuntu artful/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-0ubuntu2 [176 kB] Get:133 http://ftpmaster.internal/ubuntu artful/main amd64 libpng-dev amd64 1.6.34-1 [177 kB] Get:134 http://ftpmaster.internal/ubuntu artful/main amd64 libbz2-dev amd64 1.0.6-8.1 [29.5 kB] Get:135 http://ftpmaster.internal/ubuntu artful/main amd64 liblzma-dev amd64 5.2.2-1.3 [145 kB] Get:136 http://ftpmaster.internal/ubuntu artful/main amd64 icu-devtools amd64 57.1-6 [169 kB] Get:137 http://ftpmaster.internal/ubuntu artful/main amd64 libicu-dev amd64 57.1-6 [16.5 MB] Get:138 http://ftpmaster.internal/ubuntu artful/main amd64 pkg-config amd64 0.29.1-0ubuntu2 [45.0 kB] Get:139 http://ftpmaster.internal/ubuntu artful-proposed/universe amd64 r-base-dev all 3.4.2-1ubuntu1 [4460 B] Get:140 http://ftpmaster.internal/ubuntu artful/universe amd64 dh-r all 20161219 [8828 B] Get:141 http://ftpmaster.internal/ubuntu artful-proposed/universe amd64 r-bioc-biocgenerics all 0.22.1-1ubuntu1 [563 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 83.9 MB in 3s (23.9 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Setting up libfreetype6:amd64 (2.8-0.2ubuntu2) ... Setting up libmagic-mgc (1:5.32-1) ... Setting up libmagic1:amd64 (1:5.32-1) ... Setting up libgraphite2-3:amd64 (1.3.10-2) ... Setting up libcroco3:amd64 (0.6.12-1) ... Setting up libncurses5-dev:amd64 (6.0+20160625-1ubuntu1) ... Setting up pkg-config (0.29.1-0ubuntu2) ... Setting up libpixman-1-0:amd64 (0.34.0-1) ... Setting up libblas3:amd64 (3.7.1-3ubuntu2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg-turbo8-dev:amd64 (1.5.2-0ubuntu5) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... Setting up autotools-dev (20161112.1) ... Setting up liburi-perl (1.72-1) ... Processing triggers for systemd (234-2ubuntu12) ... Setting up libhtml-parser-perl (3.72-3build1) ... Setting up libgfortran-7-dev:amd64 (7.2.0-8ubuntu2) ... Setting up libreadline-dev:amd64 (7.0-0ubuntu2) ... Setting up gfortran-7 (7.2.0-8ubuntu2) ... Setting up libpcrecpp0v5:amd64 (2:8.39-5ubuntu3) ... Setting up libpcre32-3:amd64 (2:8.39-5ubuntu3) ... Setting up libnet-http-perl (6.16-1) ... Setting up icu-devtools (57.1-6) ... Setting up libpcre16-3:amd64 (2:8.39-5ubuntu3) ... Setting up libtcl8.6:amd64 (8.6.7+dfsg-1) ... Setting up libthai-data (0.1.26-3) ... Setting up liblzma-dev:amd64 (5.2.2-1.3) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up bsdmainutils (9.0.12+nmu1ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up x11-common (1:7.7+19ubuntu3) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up xdg-utils (1.1.1-1ubuntu2) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up libx11-data (2:1.6.4-3) ... Setting up libpython2.7-stdlib:amd64 (2.7.14-2ubuntu2) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-4ubuntu1) ... Setting up netbase (5.4) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.038-1) ... Setting up libjpeg8:amd64 (8c-2ubuntu8) ... Setting up libpaper1:amd64 (1.1.24+nmu5ubuntu1) ... Creating config file /etc/papersize with new version Setting up gfortran (4:7.2.0-1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libpaper-utils (1.1.24+nmu5ubuntu1) ... Setting up libpcre3-dev:amd64 (2:8.39-5ubuntu3) ... Setting up fontconfig-config (2.11.94-0ubuntu2) ... Setting up libhttp-date-perl (6.02-1) ... Setting up gettext (0.19.8.1-4ubuntu1) ... Setting up libblas-dev:amd64 (3.7.1-3ubuntu2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up libnet-ssleay-perl (1.80-1build1) ... Setting up liblapack3:amd64 (3.7.1-3ubuntu2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up python2.7 (2.7.14-2ubuntu2) ... Setting up libharfbuzz0b:amd64 (1.4.2-1) ... Setting up libtiff5:amd64 (4.0.8-5) ... Setting up autoconf (2.69-11) ... Setting up libthai0:amd64 (0.1.26-3) ... Setting up libicu-dev (57.1-6) ... Setting up file (1:5.32-1) ... Setting up libio-socket-ssl-perl (2.050-1) ... Setting up libhtml-tree-perl (5.03-2) ... Setting up libpython-stdlib:amd64 (2.7.14-2ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libjpeg8-dev:amd64 (8c-2ubuntu8) ... Setting up libjpeg-dev:amd64 (8c-2ubuntu8) ... Setting up automake (1:1.15-6ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up libice6:amd64 (2:1.0.9-2) ... Setting up libfile-listing-perl (6.04-1) ... Setting up man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libhttp-message-perl (6.11-1) ... Setting up libpng-dev:amd64 (1.6.34-1) ... Setting up libxcb1:amd64 (1.12-1ubuntu1) ... Setting up python (2.7.14-2ubuntu1) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up liblapack-dev:amd64 (3.7.1-3ubuntu2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libtool (2.4.6-2) ... Setting up libfontconfig1:amd64 (2.11.94-0ubuntu2) ... Setting up libsm6:amd64 (2:1.2.2-1) ... Setting up libxcb-render0:amd64 (1.12-1ubuntu1) ... Setting up po-debconf (1.0.20) ... Setting up libhttp-cookies-perl (6.01-1) ... Setting up libx11-6:amd64 (2:1.6.4-3) ... Setting up python-pkg-resources (36.2.7-2) ... Setting up libxmuu1:amd64 (2:1.1.2-2) ... Setting up python-six (1.11.0-1) ... Setting up python-scour (0.32-2) ... Setting up libxcb-shm0:amd64 (1.12-1ubuntu1) ... Setting up libxt6:amd64 (1:1.1.5-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libxft2:amd64 (2.3.2-1) ... Setting up fontconfig (2.11.94-0ubuntu2) ... Regenerating fonts cache... done. Setting up libxext6:amd64 (2:1.3.3-1) ... Setting up libxss1:amd64 (1:1.2.2-1) ... Setting up xauth (1:1.0.9-1ubuntu2) ... Setting up libpango-1.0-0:amd64 (1.40.12-1) ... Setting up libcairo2:amd64 (1.14.10-1ubuntu1) ... Setting up libtk8.6:amd64 (8.6.7-1ubuntu1) ... Setting up libpangoft2-1.0-0:amd64 (1.40.12-1) ... Setting up libpangocairo-1.0-0:amd64 (1.40.12-1) ... Setting up r-base-core (3.4.2-1ubuntu1) ... Creating config file /etc/R/Renviron with new version Setting up r-bioc-biocgenerics (0.22.1-1ubuntu1) ... Setting up dh-autoreconf (14) ... Setting up liblwp-protocol-https-perl (6.07-2) ... Setting up dh-strip-nondeterminism (0.038-1) ... Setting up libwww-perl (6.15-2) ... Setting up debhelper (10.7.2ubuntu2) ... Setting up libxml-parser-perl (2.44-2build3) ... Setting up intltool (0.51.0-4) ... Setting up dh-translations (131) ... Setting up cdbs (0.4.151ubuntu2) ... Setting up r-base-dev (3.4.2-1ubuntu1) ... Setting up dh-r (20161219) ... Setting up sbuild-build-depends-r-bioc-s4vectors-dummy (0.invalid.0) ... (Reading database ... 18874 files and directories currently installed.) Purging configuration files for pkg-create-dbgsym (0.73) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... Processing triggers for systemd (234-2ubuntu12) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-97-generic amd64 (x86_64) Toolchain package versions: binutils_2.29.1-4ubuntu1 dpkg-dev_1.18.24ubuntu1 g++-7_7.2.0-8ubuntu2 gcc-7_7.2.0-8ubuntu2 libc6-dev_2.26-0ubuntu2 libstdc++-7-dev_7.2.0-8ubuntu2 libstdc++6_7.2.0-8ubuntu2 linux-libc-dev_4.13.0-16.19 Package versions: adduser_3.113+nmu3ubuntu5 advancecomp_2.0-1 apt_1.5 apt-transport-https_1.5 autoconf_2.69-11 automake_1:1.15-6ubuntu1 autopoint_0.19.8.1-4ubuntu1 autotools-dev_20161112.1 base-files_9.6ubuntu101 base-passwd_3.5.43 bash_4.4-5ubuntu1 binutils_2.29.1-4ubuntu1 binutils-common_2.29.1-4ubuntu1 binutils-x86-64-linux-gnu_2.29.1-4ubuntu1 bsdmainutils_9.0.12+nmu1ubuntu1 bsdutils_1:2.30.1-0ubuntu4 build-essential_12.4ubuntu1 bzip2_1.0.6-8.1 ca-certificates_20170717 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pkgbinarymangler_131 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 python_2.7.14-2ubuntu1 python-minimal_2.7.14-2ubuntu1 python-pkg-resources_36.2.7-2 python-scour_0.32-2 python-six_1.11.0-1 python2.7_2.7.14-2ubuntu2 python2.7-minimal_2.7.14-2ubuntu2 r-base-core_3.4.2-1ubuntu1 r-base-dev_3.4.2-1ubuntu1 r-bioc-biocgenerics_0.22.1-1ubuntu1 readline-common_7.0-0ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-s4vectors-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.10 systemd_234-2ubuntu12 systemd-sysv_234-2ubuntu12 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.8git1 tar_1.29b-2 tzdata_2017b-2 ubuntu-keyring_2016.10.27 ucf_3.0036 unzip_6.0-21ubuntu1 util-linux_2.30.1-0ubuntu4 x11-common_1:7.7+19ubuntu3 xauth_1:1.0.9-1ubuntu2 xdg-utils_1.1.1-1ubuntu2 xz-utils_5.2.2-1.3 zip_3.0-11build1 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu Oct 12 14:23:30 2017 UTC gpgv: using RSA key gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-bioc-s4vectors_0.14.7-1.dsc dpkg-source: info: extracting r-bioc-s4vectors in r-bioc-s4vectors-0.14.7 dpkg-source: info: unpacking r-bioc-s4vectors_0.14.7.orig.tar.gz dpkg-source: info: unpacking r-bioc-s4vectors_0.14.7-1.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-13574183 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-13574183 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-13574183 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package r-bioc-s4vectors dpkg-buildpackage: info: source version 0.14.7-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build r-bioc-s4vectors-0.14.7 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --buildsystem R dh_testdir -O--buildsystem=R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules build make: 'build' is up to date. fakeroot debian/rules binary dh binary --buildsystem R dh_testdir -O--buildsystem=R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_installdirs -O--buildsystem=R dh_auto_install -O--buildsystem=R I: R Package: S4Vectors Version: 0.14.7 I: Building using R version 3.4.2-1ubuntu1 I: R API version: r-api-3.4 I: Using built-time from d/changelog: Thu, 12 Oct 2017 16:19:00 +0200 mkdir -p /<>/debian/r-bioc-s4vectors/usr/lib/R/site-library R CMD INSTALL -l /<>/debian/r-bioc-s4vectors/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 12 Oct 2017 16:19:00 +0200'" * installing *source* package ‘S4Vectors’ ... ** libs make[1]: Entering directory '/<>/src' gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1q72bO/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c AEbufs.c -o AEbufs.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1q72bO/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c DataFrame_class.c -o DataFrame_class.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1q72bO/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Hits_class.c -o Hits_class.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1q72bO/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Linteger_class.c -o Linteger_class.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1q72bO/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c List_class.c -o List_class.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1q72bO/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_S4Vectors.c -o R_init_S4Vectors.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1q72bO/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rle_class.c -o Rle_class.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1q72bO/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rle_utils.c -o Rle_utils.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1q72bO/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SEXP_utils.c -o SEXP_utils.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1q72bO/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SimpleList_class.c -o SimpleList_class.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1q72bO/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c anyMissing.c -o anyMissing.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1q72bO/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c eval_utils.c -o eval_utils.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1q72bO/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hash_utils.c -o hash_utils.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1q72bO/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c int_utils.c -o int_utils.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1q72bO/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c logical_utils.c -o logical_utils.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1q72bO/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c map_ranges_to_runs.c -o map_ranges_to_runs.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1q72bO/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c safe_arithm.c -o safe_arithm.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1q72bO/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sort_utils.c -o sort_utils.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1q72bO/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c str_utils.c -o str_utils.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1q72bO/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c subsetting_utils.c -o subsetting_utils.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1q72bO/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c vector_utils.c -o vector_utils.o gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o S4Vectors.so AEbufs.o DataFrame_class.o Hits_class.o Linteger_class.o List_class.o R_init_S4Vectors.o Rle_class.o Rle_utils.o SEXP_utils.o SimpleList_class.o anyMissing.o eval_utils.o hash_utils.o int_utils.o logical_utils.o map_ranges_to_runs.o safe_arithm.o sort_utils.o str_utils.o subsetting_utils.o vector_utils.o -L/usr/lib/R/lib -lR make[1]: Leaving directory '/<>/src' make[1]: Entering directory '/<>/src' make[1]: Leaving directory '/<>/src' installing to /<>/debian/r-bioc-s4vectors/usr/lib/R/site-library/S4Vectors/libs ** R ** inst ** preparing package for lazy loading Creating a generic function for ‘complete.cases’ from package ‘stats’ in package ‘S4Vectors’ Creating a new generic function for ‘expand.grid’ in package ‘S4Vectors’ Creating a generic function for ‘%in%’ from package ‘base’ in package ‘S4Vectors’ Creating a new generic function for ‘findMatches’ in package ‘S4Vectors’ Creating a generic function for ‘setequal’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘as.factor’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘tabulate’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘cov’ from package ‘stats’ in package ‘S4Vectors’ Creating a generic function for ‘cor’ from package ‘stats’ in package ‘S4Vectors’ Creating a generic function for ‘smoothEnds’ from package ‘stats’ in package ‘S4Vectors’ Creating a generic function for ‘runmed’ from package ‘stats’ in package ‘S4Vectors’ Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘substr’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘substring’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘chartr’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘tolower’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘toupper’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘sub’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘gsub’ from package ‘base’ in package ‘S4Vectors’ in method for ‘coerce’ with signature ‘"data.table","DataFrame"’: no definition for class “data.table” ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (S4Vectors) W: Ignoring specified R dependency: R (>= 3.3.0) W: Cannot find a debian package for Depends:stats4 I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.21.1) I: Using r-bioc-iranges for Suggests:IRanges I: Using r-bioc-genomicranges for Suggests:GenomicRanges I: Using r-cran-matrix for Suggests:Matrix I: Using r-bioc-shortread for Suggests:ShortRead I: Using r-bioc-graph for Suggests:graph I: Using r-cran-data.table for Suggests:data.table I: Using r-cran-runit for Suggests:RUnit W: Cannot find a debian package for Imports:stats4 I: Using r-bioc-biocgenerics for Imports:BiocGenerics dh_install -O--buildsystem=R dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installexamples -O--buildsystem=R dh_installman -O--buildsystem=R dh_installcatalogs -O--buildsystem=R dh_installcron -O--buildsystem=R dh_installdebconf -O--buildsystem=R dh_installemacsen -O--buildsystem=R dh_installifupdown -O--buildsystem=R dh_installinfo -O--buildsystem=R dh_systemd_enable -O--buildsystem=R dh_installinit -O--buildsystem=R dh_systemd_start -O--buildsystem=R dh_installmenu -O--buildsystem=R dh_installmime -O--buildsystem=R dh_installmodules -O--buildsystem=R dh_installlogcheck -O--buildsystem=R dh_installlogrotate -O--buildsystem=R dh_installpam -O--buildsystem=R dh_installppp -O--buildsystem=R dh_installudev -O--buildsystem=R dh_installgsettings -O--buildsystem=R dh_bugfiles -O--buildsystem=R dh_ucf -O--buildsystem=R dh_lintian -O--buildsystem=R dh_gconf -O--buildsystem=R dh_icons -O--buildsystem=R dh_perl -O--buildsystem=R dh_usrlocal -O--buildsystem=R dh_link -O--buildsystem=R dh_installwm -O--buildsystem=R dh_installxfonts -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_strip -O--buildsystem=R dh_makeshlibs -O--buildsystem=R dh_shlibdeps -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 pkgstriptranslations: processing r-bioc-s4vectors-dbgsym (in debian/.debhelper/r-bioc-s4vectors/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing r-bioc-s4vectors (in debian/r-bioc-s4vectors); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/r-bioc-s4vectors/dbgsym-root/DEBIAN/control, package r-bioc-s4vectors-dbgsym, directory debian/.debhelper/r-bioc-s4vectors/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-bioc-s4vectors-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-bioc-s4vectors-dbgsym' in 'debian/.debhelper/scratch-space/build-r-bioc-s4vectors/r-bioc-s4vectors-dbgsym_0.14.7-1_amd64.deb'. Renaming r-bioc-s4vectors-dbgsym_0.14.7-1_amd64.deb to r-bioc-s4vectors-dbgsym_0.14.7-1_amd64.ddeb pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-bioc-s4vectors/DEBIAN/control, package r-bioc-s4vectors, directory debian/r-bioc-s4vectors pkgstripfiles: Truncating usr/share/doc/r-bioc-s4vectors/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-bioc-s4vectors ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-bioc-s4vectors' in '../r-bioc-s4vectors_0.14.7-1_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../r-bioc-s4vectors_0.14.7-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build r-bioc-s4vectors-0.14.7 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20171013-0824 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-bioc-s4vectors_0.14.7-1_amd64.changes: ---------------------------------------- Format: 1.8 Date: Thu, 12 Oct 2017 16:19:00 +0200 Source: r-bioc-s4vectors Binary: r-bioc-s4vectors Architecture: amd64 Version: 0.14.7-1 Distribution: artful-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: r-bioc-s4vectors - BioConductor S4 implementation of vectors and lists Changes: r-bioc-s4vectors (0.14.7-1) unstable; urgency=medium . * New upstream version * Moved packaging from SVN to Git * Standards-Version: 4.1.1 * Build-Depends: r-bioc-biocgenerics (>= 0.22.1) * Remove unnecessary testsuite autopkgtest-header Checksums-Sha1: e0a5062ff4574f0eb8451ff0a3b66a3d4aaf9f31 128764 r-bioc-s4vectors-dbgsym_0.14.7-1_amd64.ddeb d914b69461bd3ff6090a9e35b8b10a9b7b898054 9778 r-bioc-s4vectors_0.14.7-1_amd64.buildinfo 39773c91bd1fb83e63707a4373051a3e32fdac40 1170006 r-bioc-s4vectors_0.14.7-1_amd64.deb Checksums-Sha256: b22524866962ed1bf4a0bd0b2e9e76f0e88abf91cc3bceddf473ff44a4098948 128764 r-bioc-s4vectors-dbgsym_0.14.7-1_amd64.ddeb f85f0950b77d10df5f431dfa034a9ad27d0c5e4e9237582696367118ae46a7f3 9778 r-bioc-s4vectors_0.14.7-1_amd64.buildinfo d8faf6e1c66f2e7a48a2b970e9111aba65c0a7daf57aa687d2708403a272abaa 1170006 r-bioc-s4vectors_0.14.7-1_amd64.deb Files: 01563cc3dc6359fc8682c9525f7e7849 128764 debug extra r-bioc-s4vectors-dbgsym_0.14.7-1_amd64.ddeb 2bff7f2576517cc2188659f07ca29c22 9778 gnu-r optional r-bioc-s4vectors_0.14.7-1_amd64.buildinfo 16d8ef515169e98f5fe09d9775d6ae6e 1170006 gnu-r optional r-bioc-s4vectors_0.14.7-1_amd64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-bioc-s4vectors_0.14.7-1_amd64.deb ----------------------------------- new debian package, version 2.0. size 1170006 bytes: control archive=2290 bytes. 1164 bytes, 20 lines control 4185 bytes, 48 lines md5sums Package: r-bioc-s4vectors Version: 0.14.7-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1796 Depends: r-base-core (>= 3.4.2-1ubuntu1), r-api-3.4, r-bioc-biocgenerics (>= 0.21.1), libc6 (>= 2.14) Suggests: r-bioc-iranges, r-bioc-genomicranges, r-cran-matrix, r-bioc-shortread, r-bioc-graph, r-cran-data.table, r-cran-runit Section: gnu-r Priority: optional Homepage: https://bioconductor.org/packages/S4Vectors/ Description: BioConductor S4 implementation of vectors and lists The S4Vectors package defines the Vector and List virtual classes and a set of generic functions that extend the semantic of ordinary vectors and lists in R. Package developers can easily implement vector-like or list-like objects as concrete subclasses of Vector or List. 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Package: r-bioc-s4vectors Package-Time: 59 Source-Version: 0.14.7-1 Space: 4980 Status: successful Version: 0.14.7-1 -------------------------------------------------------------------------------- Finished at 20171013-0824 Build needed 00:00:59, 4980k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=artful --arch=amd64 PACKAGEBUILD-13574183 Scanning for processes to kill in build PACKAGEBUILD-13574183 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=artful --arch=amd64 PACKAGEBUILD-13574183 Stopping target for build PACKAGEBUILD-13574183 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=artful --arch=amd64 PACKAGEBUILD-13574183 Removing build PACKAGEBUILD-13574183