https://launchpad.net/ubuntu/+source/r-bioc-shortread/1.42.0-1/+build/17293359 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-s390x-010 4.4.0-155-generic #182-Ubuntu SMP Tue Jul 2 14:41:35 UTC 2019 s390x Buildd toolchain package versions: launchpad-buildd_176 python-lpbuildd_176 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 20 Jul 17:44:43 ntpdate[1854]: adjust time server 10.211.37.1 offset -0.000077 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=eoan --arch=s390x PACKAGEBUILD-17293359 --image-type chroot /home/buildd/filecache-default/5f92d5ecab7ce0d953bb2def2bd7e5fe5fb7c904 Creating target for build PACKAGEBUILD-17293359 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=eoan --arch=s390x PACKAGEBUILD-17293359 Starting target for build PACKAGEBUILD-17293359 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=eoan --arch=s390x PACKAGEBUILD-17293359 'deb http://ftpmaster.internal/ubuntu eoan main universe' 'deb http://ftpmaster.internal/ubuntu eoan-security main universe' 'deb http://ftpmaster.internal/ubuntu eoan-updates main universe' 'deb http://ftpmaster.internal/ubuntu eoan-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-17293359 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=eoan --arch=s390x PACKAGEBUILD-17293359 Updating target for build PACKAGEBUILD-17293359 Get:1 http://ftpmaster.internal/ubuntu eoan InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu eoan-security InRelease [79.7 kB] Get:3 http://ftpmaster.internal/ubuntu eoan-updates InRelease [79.7 kB] Get:4 http://ftpmaster.internal/ubuntu eoan-proposed InRelease [107 kB] Get:5 http://ftpmaster.internal/ubuntu eoan/main s390x Packages [914 kB] Get:6 http://ftpmaster.internal/ubuntu eoan/main Translation-en [501 kB] Get:7 http://ftpmaster.internal/ubuntu eoan/universe s390x Packages [8672 kB] Get:8 http://ftpmaster.internal/ubuntu eoan/universe Translation-en [5297 kB] Get:9 http://ftpmaster.internal/ubuntu eoan-proposed/main s390x Packages [71.3 kB] Get:10 http://ftpmaster.internal/ubuntu eoan-proposed/main Translation-en [47.2 kB] Get:11 http://ftpmaster.internal/ubuntu eoan-proposed/universe s390x Packages [267 kB] Get:12 http://ftpmaster.internal/ubuntu eoan-proposed/universe Translation-en [216 kB] Fetched 16.5 MB in 4s (4706 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-8 libapt-pkg5.0 libisl19 libjson-c3 libreadline7 libstdc++-8-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-9 g++-9 gcc-9 gcc-9-base libapt-pkg5.90 libgcc-9-dev libisl21 libjson-c4 libpcre2-8-0 libreadline8 libstdc++-9-dev The following packages will be upgraded: adduser advancecomp apt base-files base-passwd bash binutils binutils-common binutils-s390x-linux-gnu bsdutils build-essential bzip2 ca-certificates coreutils cpp cpp-8 dash debconf debianutils diffutils dmsetup dpkg dpkg-dev e2fslibs e2fsprogs fdisk findutils g++ g++-8 gcc gcc-8 gcc-8-base gpg gpg-agent gpgconf gpgv grep gzip init init-system-helpers libacl1 libapparmor1 libargon2-1 libasan5 libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcomerr2 libcryptsetup12 libdb5.3 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libext2fs2 libfdisk1 libgcc-8-dev libgcc1 libgcrypt20 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error0 libhogweed4 libidn11 libitm1 libkmod2 liblz4-1 liblzma5 libmount1 libmpfr6 libncurses6 libncursesw6 libnettle6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre3 libperl5.28 libpng16-16 libprocps7 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-8-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libubsan1 libudev1 libunistring2 libuuid1 libzstd1 linux-libc-dev login lsb-base mount multiarch-support ncurses-base ncurses-bin openssl optipng passwd patch perl perl-base perl-modules-5.28 pinentry-curses pkgbinarymangler procps readline-common sed systemd systemd-sysv sysvinit-utils tar tzdata util-linux xz-utils zlib1g 143 upgraded, 11 newly installed, 0 to remove and 0 not upgraded. Need to get 92.8 MB of archives. After this operation, 102 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu eoan/main s390x libc6-dev s390x 2.29-0ubuntu3 [2034 kB] Get:2 http://ftpmaster.internal/ubuntu eoan/main s390x libc-dev-bin s390x 2.29-0ubuntu3 [62.5 kB] Get:3 http://ftpmaster.internal/ubuntu eoan/main s390x linux-libc-dev s390x 5.2.0-8.9 [1056 kB] Get:4 http://ftpmaster.internal/ubuntu eoan/main s390x libc6 s390x 2.29-0ubuntu3 [2253 kB] Get:5 http://ftpmaster.internal/ubuntu eoan/main s390x libc-bin s390x 2.29-0ubuntu3 [514 kB] Get:6 http://ftpmaster.internal/ubuntu eoan-proposed/main s390x gcc-9-base s390x 9.1.0-9ubuntu2 [17.7 kB] Get:7 http://ftpmaster.internal/ubuntu eoan-proposed/main s390x libgcc1 s390x 1:9.1.0-9ubuntu2 [24.5 kB] Get:8 http://ftpmaster.internal/ubuntu eoan/main s390x base-files s390x 10.2ubuntu4 [60.3 kB] Get:9 http://ftpmaster.internal/ubuntu eoan/main s390x debianutils s390x 4.8.6.3 [84.9 kB] Get:10 http://ftpmaster.internal/ubuntu eoan/main s390x bash s390x 5.0-4ubuntu1 [602 kB] Get:11 http://ftpmaster.internal/ubuntu eoan/main s390x bsdutils s390x 1:2.33.1-0.1ubuntu2 [61.2 kB] Get:12 http://ftpmaster.internal/ubuntu eoan/main s390x coreutils s390x 8.30-3ubuntu1 [1221 kB] Get:13 http://ftpmaster.internal/ubuntu eoan/main s390x lsb-base all 10.2019051400ubuntu1 [12.4 kB] Get:14 http://ftpmaster.internal/ubuntu eoan/main s390x tar s390x 1.30+dfsg-6 [230 kB] Get:15 http://ftpmaster.internal/ubuntu eoan/main s390x dpkg s390x 1.19.7ubuntu1 [1107 kB] Get:16 http://ftpmaster.internal/ubuntu eoan/main s390x libperl5.28 s390x 5.28.1-6 [3669 kB] Get:17 http://ftpmaster.internal/ubuntu eoan/main s390x perl s390x 5.28.1-6 [204 kB] Get:18 http://ftpmaster.internal/ubuntu eoan/main s390x perl-base s390x 5.28.1-6 [1420 kB] Get:19 http://ftpmaster.internal/ubuntu eoan/main s390x perl-modules-5.28 all 5.28.1-6 [2818 kB] Get:20 http://ftpmaster.internal/ubuntu eoan/main s390x bzip2 s390x 1.0.6-9.2 [32.8 kB] Get:21 http://ftpmaster.internal/ubuntu eoan/main s390x libbz2-1.0 s390x 1.0.6-9.2 [32.1 kB] Get:22 http://ftpmaster.internal/ubuntu eoan/main s390x libdb5.3 s390x 5.3.28+dfsg1-0.6ubuntu1 [608 kB] Get:23 http://ftpmaster.internal/ubuntu eoan/main s390x libgdbm6 s390x 1.18.1-4 [26.8 kB] Get:24 http://ftpmaster.internal/ubuntu eoan/main s390x libgdbm-compat4 s390x 1.18.1-4 [6260 B] Get:25 http://ftpmaster.internal/ubuntu eoan/main s390x zlib1g s390x 1:1.2.11.dfsg-1ubuntu2 [51.8 kB] Get:26 http://ftpmaster.internal/ubuntu eoan/main s390x debconf all 1.5.72 [122 kB] Get:27 http://ftpmaster.internal/ubuntu eoan/main s390x dash s390x 0.5.10.2-6 [83.6 kB] Get:28 http://ftpmaster.internal/ubuntu eoan/main s390x diffutils s390x 1:3.7-3 [194 kB] Get:29 http://ftpmaster.internal/ubuntu eoan/main s390x findutils s390x 4.6.0+git+20190209-2ubuntu1 [320 kB] Get:30 http://ftpmaster.internal/ubuntu eoan/main s390x grep s390x 3.3-1 [146 kB] Get:31 http://ftpmaster.internal/ubuntu eoan/main s390x gzip s390x 1.10-0ubuntu1 [92.9 kB] Get:32 http://ftpmaster.internal/ubuntu eoan/main s390x libsmartcols1 s390x 2.33.1-0.1ubuntu2 [85.8 kB] Get:33 http://ftpmaster.internal/ubuntu eoan/main s390x libuuid1 s390x 2.33.1-0.1ubuntu2 [21.0 kB] Get:34 http://ftpmaster.internal/ubuntu eoan/main s390x libblkid1 s390x 2.33.1-0.1ubuntu2 [123 kB] Get:35 http://ftpmaster.internal/ubuntu eoan/main s390x libfdisk1 s390x 2.33.1-0.1ubuntu2 [159 kB] Get:36 http://ftpmaster.internal/ubuntu eoan/main s390x libpcre2-8-0 s390x 10.32-5 [99.3 kB] Get:37 http://ftpmaster.internal/ubuntu eoan/main s390x libselinux1 s390x 2.9-2 [64.7 kB] Get:38 http://ftpmaster.internal/ubuntu eoan/main s390x libmount1 s390x 2.33.1-0.1ubuntu2 [133 kB] Get:39 http://ftpmaster.internal/ubuntu eoan-proposed/main s390x libncurses6 s390x 6.1+20190713-1ubuntu1 [94.1 kB] Get:40 http://ftpmaster.internal/ubuntu eoan-proposed/main s390x libtinfo6 s390x 6.1+20190713-1ubuntu1 [82.3 kB] Get:41 http://ftpmaster.internal/ubuntu eoan-proposed/main s390x libncursesw6 s390x 6.1+20190713-1ubuntu1 [120 kB] Get:42 http://ftpmaster.internal/ubuntu eoan/main s390x fdisk s390x 2.33.1-0.1ubuntu2 [111 kB] Get:43 http://ftpmaster.internal/ubuntu eoan/main s390x login s390x 1:4.5-1.1ubuntu2 [262 kB] Get:44 http://ftpmaster.internal/ubuntu eoan/main s390x util-linux s390x 2.33.1-0.1ubuntu2 [960 kB] Get:45 http://ftpmaster.internal/ubuntu eoan-proposed/main s390x ncurses-bin s390x 6.1+20190713-1ubuntu1 [164 kB] Get:46 http://ftpmaster.internal/ubuntu eoan/main s390x sed s390x 4.7-1 [187 kB] Get:47 http://ftpmaster.internal/ubuntu eoan/main s390x libdebconfclient0 s390x 0.249ubuntu1 [6192 B] Get:48 http://ftpmaster.internal/ubuntu eoan/main s390x base-passwd s390x 3.5.46 [46.3 kB] Get:49 http://ftpmaster.internal/ubuntu eoan/main s390x init-system-helpers all 1.57 [38.3 kB] Get:50 http://ftpmaster.internal/ubuntu eoan/main s390x ncurses-base all 6.1+20181013-2ubuntu2 [17.9 kB] Get:51 http://ftpmaster.internal/ubuntu eoan/main s390x sysvinit-utils s390x 2.93-8ubuntu1 [19.0 kB] Get:52 http://ftpmaster.internal/ubuntu eoan/main s390x liblz4-1 s390x 1.9.1-1 [52.4 kB] Get:53 http://ftpmaster.internal/ubuntu eoan/main s390x liblzma5 s390x 5.2.4-1 [91.5 kB] Get:54 http://ftpmaster.internal/ubuntu eoan-proposed/main s390x libstdc++6 s390x 9.1.0-9ubuntu2 [497 kB] Get:55 http://ftpmaster.internal/ubuntu eoan/main s390x libnettle6 s390x 3.4.1-1 [121 kB] Get:56 http://ftpmaster.internal/ubuntu eoan/main s390x libhogweed4 s390x 3.4.1-1 [138 kB] Get:57 http://ftpmaster.internal/ubuntu eoan/main s390x libp11-kit0 s390x 0.23.15-2 [184 kB] Get:58 http://ftpmaster.internal/ubuntu eoan/main s390x libtasn1-6 s390x 4.13-4 [34.3 kB] Get:59 http://ftpmaster.internal/ubuntu eoan/main s390x libunistring2 s390x 0.9.10-2 [357 kB] Get:60 http://ftpmaster.internal/ubuntu eoan-proposed/main s390x libgnutls30 s390x 3.6.8-2 [677 kB] Get:61 http://ftpmaster.internal/ubuntu eoan/main s390x systemd-sysv s390x 240-6ubuntu9 [9380 B] Get:62 http://ftpmaster.internal/ubuntu eoan/main s390x libacl1 s390x 2.2.53-4 [17.9 kB] Get:63 http://ftpmaster.internal/ubuntu eoan/main s390x libapparmor1 s390x 2.13.2-9ubuntu7 [32.9 kB] Get:64 http://ftpmaster.internal/ubuntu eoan-proposed/main s390x libaudit-common all 1:2.8.5-1ubuntu1 [4260 B] Get:65 http://ftpmaster.internal/ubuntu eoan/main s390x libcap-ng0 s390x 0.7.9-2 [10.6 kB] Get:66 http://ftpmaster.internal/ubuntu eoan-proposed/main s390x libaudit1 s390x 1:2.8.5-1ubuntu1 [37.0 kB] Get:67 http://ftpmaster.internal/ubuntu eoan/main s390x libcap2 s390x 1:2.25-2 [13.3 kB] Get:68 http://ftpmaster.internal/ubuntu eoan/main s390x libjson-c4 s390x 0.13.1+dfsg-2 [27.4 kB] Get:69 http://ftpmaster.internal/ubuntu eoan/main s390x libargon2-1 s390x 0~20171227-0.2 [35.7 kB] Get:70 http://ftpmaster.internal/ubuntu eoan/main s390x libudev1 s390x 240-6ubuntu9 [59.8 kB] Get:71 http://ftpmaster.internal/ubuntu eoan/main s390x libdevmapper1.02.1 s390x 2:1.02.155-2ubuntu4 [122 kB] Get:72 http://ftpmaster.internal/ubuntu eoan/main s390x libssl1.1 s390x 1.1.1c-1ubuntu3 [969 kB] Get:73 http://ftpmaster.internal/ubuntu eoan/main s390x libcryptsetup12 s390x 2:2.1.0-5ubuntu2 [131 kB] Get:74 http://ftpmaster.internal/ubuntu eoan/main s390x libgpg-error0 s390x 1.36-7 [53.9 kB] Get:75 http://ftpmaster.internal/ubuntu eoan/main s390x libidn11 s390x 1.33-2.2ubuntu2 [44.6 kB] Get:76 http://ftpmaster.internal/ubuntu eoan/main s390x libkmod2 s390x 26-1ubuntu1 [39.0 kB] Get:77 http://ftpmaster.internal/ubuntu eoan/main s390x libpam0g s390x 1.3.1-5ubuntu1 [53.9 kB] Get:78 http://ftpmaster.internal/ubuntu eoan/main s390x libseccomp2 s390x 2.4.1-0ubuntu0.19.10.3 [40.5 kB] Get:79 http://ftpmaster.internal/ubuntu eoan/main s390x mount s390x 2.33.1-0.1ubuntu2 [108 kB] Get:80 http://ftpmaster.internal/ubuntu eoan/main s390x libsepol1 s390x 2.9-2 [225 kB] Get:81 http://ftpmaster.internal/ubuntu eoan/main s390x libsemanage-common all 2.9-2 [9784 B] Get:82 http://ftpmaster.internal/ubuntu eoan/main s390x libsemanage1 s390x 2.9-2 [78.6 kB] Get:83 http://ftpmaster.internal/ubuntu eoan/main s390x libpam-modules-bin s390x 1.3.1-5ubuntu1 [35.8 kB] Get:84 http://ftpmaster.internal/ubuntu eoan/main s390x libpam-modules s390x 1.3.1-5ubuntu1 [238 kB] Get:85 http://ftpmaster.internal/ubuntu eoan/main s390x passwd s390x 1:4.5-1.1ubuntu2 [797 kB] Get:86 http://ftpmaster.internal/ubuntu eoan/main s390x adduser all 3.118ubuntu1 [163 kB] Get:87 http://ftpmaster.internal/ubuntu eoan/main s390x systemd s390x 240-6ubuntu9 [2994 kB] Get:88 http://ftpmaster.internal/ubuntu eoan/main s390x libsystemd0 s390x 240-6ubuntu9 [221 kB] Get:89 http://ftpmaster.internal/ubuntu eoan/main s390x libzstd1 s390x 1.3.8+dfsg-3 [204 kB] Get:90 http://ftpmaster.internal/ubuntu eoan/main s390x libapt-pkg5.90 s390x 1.9.1 [754 kB] Get:91 http://ftpmaster.internal/ubuntu eoan/main s390x libgcrypt20 s390x 1.8.4-5ubuntu1 [352 kB] Get:92 http://ftpmaster.internal/ubuntu eoan/main s390x gpgv s390x 2.2.12-1ubuntu3 [180 kB] Get:93 http://ftpmaster.internal/ubuntu eoan/main s390x apt s390x 1.9.1 [1230 kB] Get:94 http://ftpmaster.internal/ubuntu eoan/main s390x libext2fs2 s390x 1.45.2-1ubuntu1 [179 kB] Get:95 http://ftpmaster.internal/ubuntu eoan/main s390x e2fsprogs s390x 1.45.2-1ubuntu1 [508 kB] Get:96 http://ftpmaster.internal/ubuntu eoan/main s390x init s390x 1.57 [6088 B] Get:97 http://ftpmaster.internal/ubuntu eoan/main s390x libattr1 s390x 1:2.4.48-4 [12.0 kB] Get:98 http://ftpmaster.internal/ubuntu eoan/main s390x libpam-runtime all 1.3.1-5ubuntu1 [37.3 kB] Get:99 http://ftpmaster.internal/ubuntu eoan/main s390x libpcre3 s390x 2:8.39-12 [154 kB] Get:100 http://ftpmaster.internal/ubuntu eoan/main s390x libcom-err2 s390x 1.45.2-1ubuntu1 [9712 B] Get:101 http://ftpmaster.internal/ubuntu eoan/main s390x libprocps7 s390x 2:3.3.15-2ubuntu2 [30.9 kB] Get:102 http://ftpmaster.internal/ubuntu eoan/main s390x libss2 s390x 1.45.2-1ubuntu1 [10.6 kB] Get:103 http://ftpmaster.internal/ubuntu eoan/main s390x procps s390x 2:3.3.15-2ubuntu2 [220 kB] Get:104 http://ftpmaster.internal/ubuntu eoan/main s390x openssl s390x 1.1.1c-1ubuntu3 [605 kB] Get:105 http://ftpmaster.internal/ubuntu eoan/main s390x ca-certificates all 20190110 [146 kB] Get:106 http://ftpmaster.internal/ubuntu eoan/main s390x dmsetup s390x 2:1.02.155-2ubuntu4 [73.5 kB] Get:107 http://ftpmaster.internal/ubuntu eoan/main s390x readline-common all 8.0-2 [53.4 kB] Get:108 http://ftpmaster.internal/ubuntu eoan/main s390x libreadline8 s390x 8.0-2 [122 kB] Get:109 http://ftpmaster.internal/ubuntu eoan-proposed/main s390x libslang2 s390x 2.3.2-4 [416 kB] Get:110 http://ftpmaster.internal/ubuntu eoan-proposed/main s390x libsqlite3-0 s390x 3.29.0-1 [497 kB] Get:111 http://ftpmaster.internal/ubuntu eoan/main s390x tzdata all 2019b-1 [187 kB] Get:112 http://ftpmaster.internal/ubuntu eoan/main s390x xz-utils s390x 5.2.4-1 [80.3 kB] Get:113 http://ftpmaster.internal/ubuntu eoan/main s390x libpng16-16 s390x 1.6.37-1 [173 kB] Get:114 http://ftpmaster.internal/ubuntu eoan/main s390x multiarch-support s390x 2.29-0ubuntu3 [6924 B] Get:115 http://ftpmaster.internal/ubuntu eoan/main s390x advancecomp s390x 2.1-2.1 [182 kB] Get:116 http://ftpmaster.internal/ubuntu eoan/main s390x binutils-s390x-linux-gnu s390x 2.32.51.20190702-1ubuntu1 [1728 kB] Get:117 http://ftpmaster.internal/ubuntu eoan/main s390x libbinutils s390x 2.32.51.20190702-1ubuntu1 [298 kB] Get:118 http://ftpmaster.internal/ubuntu eoan/main s390x binutils s390x 2.32.51.20190702-1ubuntu1 [3332 B] Get:119 http://ftpmaster.internal/ubuntu eoan/main s390x binutils-common s390x 2.32.51.20190702-1ubuntu1 [202 kB] Get:120 http://ftpmaster.internal/ubuntu eoan/main s390x libisl21 s390x 0.21-1 [529 kB] Get:121 http://ftpmaster.internal/ubuntu eoan/main s390x libmpfr6 s390x 4.0.2-1 [229 kB] Get:122 http://ftpmaster.internal/ubuntu eoan-proposed/main s390x cpp-9 s390x 9.1.0-9ubuntu2 [7398 kB] Get:123 http://ftpmaster.internal/ubuntu eoan/main s390x g++ s390x 4:9.1.0-1ubuntu4 [1596 B] Get:124 http://ftpmaster.internal/ubuntu eoan/main s390x gcc s390x 4:9.1.0-1ubuntu4 [5200 B] Get:125 http://ftpmaster.internal/ubuntu eoan/main s390x cpp s390x 4:9.1.0-1ubuntu4 [27.6 kB] Get:126 http://ftpmaster.internal/ubuntu eoan-proposed/main s390x libcc1-0 s390x 9.1.0-9ubuntu2 [45.5 kB] Get:127 http://ftpmaster.internal/ubuntu eoan-proposed/main s390x libgomp1 s390x 9.1.0-9ubuntu2 [81.9 kB] Get:128 http://ftpmaster.internal/ubuntu eoan-proposed/main s390x libitm1 s390x 9.1.0-9ubuntu2 [26.8 kB] Get:129 http://ftpmaster.internal/ubuntu eoan-proposed/main s390x libatomic1 s390x 9.1.0-9ubuntu2 [8416 B] Get:130 http://ftpmaster.internal/ubuntu eoan-proposed/main s390x libasan5 s390x 9.1.0-9ubuntu2 [350 kB] Get:131 http://ftpmaster.internal/ubuntu eoan-proposed/main s390x libubsan1 s390x 9.1.0-9ubuntu2 [123 kB] Get:132 http://ftpmaster.internal/ubuntu eoan-proposed/main s390x libgcc-9-dev s390x 9.1.0-9ubuntu2 [690 kB] Get:133 http://ftpmaster.internal/ubuntu eoan-proposed/main s390x gcc-9 s390x 9.1.0-9ubuntu2 [8009 kB] Get:134 http://ftpmaster.internal/ubuntu eoan-proposed/main s390x libstdc++-9-dev s390x 9.1.0-9ubuntu2 [1638 kB] Get:135 http://ftpmaster.internal/ubuntu eoan-proposed/main s390x g++-9 s390x 9.1.0-9ubuntu2 [8549 kB] Get:136 http://ftpmaster.internal/ubuntu eoan/main s390x dpkg-dev all 1.19.7ubuntu1 [679 kB] Get:137 http://ftpmaster.internal/ubuntu eoan/main s390x libdpkg-perl all 1.19.7ubuntu1 [230 kB] Get:138 http://ftpmaster.internal/ubuntu eoan/main s390x patch s390x 2.7.6-4 [102 kB] Get:139 http://ftpmaster.internal/ubuntu eoan/main s390x build-essential s390x 12.6ubuntu1 [4664 B] Get:140 http://ftpmaster.internal/ubuntu eoan/universe s390x g++-8 s390x 8.3.0-19ubuntu1 [7644 kB] Get:141 http://ftpmaster.internal/ubuntu eoan/universe s390x gcc-8 s390x 8.3.0-19ubuntu1 [7350 kB] Get:142 http://ftpmaster.internal/ubuntu eoan/universe s390x libstdc++-8-dev s390x 8.3.0-19ubuntu1 [1497 kB] Get:143 http://ftpmaster.internal/ubuntu eoan/universe s390x libgcc-8-dev s390x 8.3.0-19ubuntu1 [654 kB] Get:144 http://ftpmaster.internal/ubuntu eoan/universe s390x cpp-8 s390x 8.3.0-19ubuntu1 [6593 kB] Get:145 http://ftpmaster.internal/ubuntu eoan/universe s390x gcc-8-base s390x 8.3.0-19ubuntu1 [18.6 kB] Get:146 http://ftpmaster.internal/ubuntu eoan/main s390x e2fslibs s390x 1.45.2-1ubuntu1 [2716 B] Get:147 http://ftpmaster.internal/ubuntu eoan/main s390x libassuan0 s390x 2.5.3-7ubuntu1 [32.2 kB] Get:148 http://ftpmaster.internal/ubuntu eoan/main s390x pinentry-curses s390x 1.1.0-2 [34.3 kB] Get:149 http://ftpmaster.internal/ubuntu eoan/main s390x gpg s390x 2.2.12-1ubuntu3 [431 kB] Get:150 http://ftpmaster.internal/ubuntu eoan/main s390x gpgconf s390x 2.2.12-1ubuntu3 [115 kB] Get:151 http://ftpmaster.internal/ubuntu eoan/main s390x gpg-agent s390x 2.2.12-1ubuntu3 [209 kB] Get:152 http://ftpmaster.internal/ubuntu eoan/main s390x libcomerr2 s390x 1.45.2-1ubuntu1 [2704 B] Get:153 http://ftpmaster.internal/ubuntu eoan/main s390x optipng s390x 0.7.7-1 [82.0 kB] Get:154 http://ftpmaster.internal/ubuntu eoan/main s390x pkgbinarymangler all 144 [55.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 92.8 MB in 2s (54.5 MB/s) (Reading database ... 12438 files and directories currently installed.) Preparing to unpack .../libc6-dev_2.29-0ubuntu3_s390x.deb ... Unpacking libc6-dev:s390x (2.29-0ubuntu3) over (2.28-0ubuntu1) ... Preparing to unpack .../libc-dev-bin_2.29-0ubuntu3_s390x.deb ... Unpacking libc-dev-bin (2.29-0ubuntu3) over (2.28-0ubuntu1) ... Preparing to unpack .../linux-libc-dev_5.2.0-8.9_s390x.deb ... Unpacking linux-libc-dev:s390x (5.2.0-8.9) over (4.18.0-11.12) ... Preparing to unpack .../libc6_2.29-0ubuntu3_s390x.deb ... Unpacking libc6:s390x (2.29-0ubuntu3) over (2.28-0ubuntu1) ... Setting up libc6:s390x (2.29-0ubuntu3) ... (Reading database ... 12485 files and directories currently installed.) Preparing to unpack .../libc-bin_2.29-0ubuntu3_s390x.deb ... Unpacking libc-bin (2.29-0ubuntu3) over (2.28-0ubuntu1) ... Setting up libc-bin (2.29-0ubuntu3) ... Selecting previously unselected package gcc-9-base:s390x. (Reading database ... 12485 files and directories currently installed.) Preparing to unpack .../gcc-9-base_9.1.0-9ubuntu2_s390x.deb ... Unpacking gcc-9-base:s390x (9.1.0-9ubuntu2) ... Setting up gcc-9-base:s390x (9.1.0-9ubuntu2) ... (Reading database ... 12491 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a9.1.0-9ubuntu2_s390x.deb ... Unpacking libgcc1:s390x (1:9.1.0-9ubuntu2) over (1:8.2.0-12ubuntu1) ... Setting up libgcc1:s390x (1:9.1.0-9ubuntu2) ... (Reading database ... 12491 files and directories currently installed.) Preparing to unpack .../base-files_10.2ubuntu4_s390x.deb ... Unpacking base-files (10.2ubuntu4) over (10.1ubuntu8) ... Setting up base-files (10.2ubuntu4) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12491 files and directories currently installed.) Preparing to unpack .../debianutils_4.8.6.3_s390x.deb ... Unpacking debianutils (4.8.6.3) over (4.8.6) ... Setting up debianutils (4.8.6.3) ... (Reading database ... 12491 files and directories currently installed.) Preparing to unpack .../bash_5.0-4ubuntu1_s390x.deb ... Unpacking bash (5.0-4ubuntu1) over (4.4.18-2ubuntu3) ... Setting up bash (5.0-4ubuntu1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12491 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.33.1-0.1ubuntu2_s390x.deb ... Unpacking bsdutils (1:2.33.1-0.1ubuntu2) over (1:2.32-0.1ubuntu2) ... Setting up bsdutils (1:2.33.1-0.1ubuntu2) ... (Reading database ... 12491 files and directories currently installed.) Preparing to unpack .../coreutils_8.30-3ubuntu1_s390x.deb ... Unpacking coreutils (8.30-3ubuntu1) over (8.28-1ubuntu2) ... Setting up coreutils (8.30-3ubuntu1) ... (Reading database ... 12491 files and directories currently installed.) Preparing to unpack .../lsb-base_10.2019051400ubuntu1_all.deb ... Unpacking lsb-base (10.2019051400ubuntu1) over (9.20170808ubuntu1) ... Preparing to unpack .../tar_1.30+dfsg-6_s390x.deb ... Unpacking tar (1.30+dfsg-6) over (1.30+dfsg-3) ... Setting up tar (1.30+dfsg-6) ... (Reading database ... 12490 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.7ubuntu1_s390x.deb ... Unpacking dpkg (1.19.7ubuntu1) over (1.19.2ubuntu1) ... Setting up dpkg (1.19.7ubuntu1) ... Installing new version of config file /etc/cron.daily/dpkg ... (Reading database ... 12498 files and directories currently installed.) Preparing to unpack .../libperl5.28_5.28.1-6_s390x.deb ... Unpacking libperl5.28:s390x (5.28.1-6) over (5.28.1-3) ... Preparing to unpack .../perl_5.28.1-6_s390x.deb ... Unpacking perl (5.28.1-6) over (5.28.1-3) ... Preparing to unpack .../perl-base_5.28.1-6_s390x.deb ... Unpacking perl-base (5.28.1-6) over (5.28.1-3) ... Setting up perl-base (5.28.1-6) ... (Reading database ... 12498 files and directories currently installed.) Preparing to unpack .../perl-modules-5.28_5.28.1-6_all.deb ... Unpacking perl-modules-5.28 (5.28.1-6) over (5.28.1-3) ... Preparing to unpack .../bzip2_1.0.6-9.2_s390x.deb ... Unpacking bzip2 (1.0.6-9.2) over (1.0.6-9) ... Preparing to unpack .../libbz2-1.0_1.0.6-9.2_s390x.deb ... Unpacking libbz2-1.0:s390x (1.0.6-9.2) over (1.0.6-9) ... Setting up libbz2-1.0:s390x (1.0.6-9.2) ... (Reading database ... 12498 files and directories currently installed.) Preparing to unpack .../libdb5.3_5.3.28+dfsg1-0.6ubuntu1_s390x.deb ... Unpacking libdb5.3:s390x (5.3.28+dfsg1-0.6ubuntu1) over (5.3.28+dfsg1-0.2) ... Setting up libdb5.3:s390x (5.3.28+dfsg1-0.6ubuntu1) ... (Reading database ... 12498 files and directories currently installed.) Preparing to unpack .../libgdbm6_1.18.1-4_s390x.deb ... Unpacking libgdbm6:s390x (1.18.1-4) over (1.18.1-2) ... Preparing to unpack .../libgdbm-compat4_1.18.1-4_s390x.deb ... Unpacking libgdbm-compat4:s390x (1.18.1-4) over (1.18.1-2) ... Preparing to unpack .../zlib1g_1%3a1.2.11.dfsg-1ubuntu2_s390x.deb ... Unpacking zlib1g:s390x (1:1.2.11.dfsg-1ubuntu2) over (1:1.2.11.dfsg-0ubuntu2) ... Setting up zlib1g:s390x (1:1.2.11.dfsg-1ubuntu2) ... (Reading database ... 12498 files and directories currently installed.) Preparing to unpack .../debconf_1.5.72_all.deb ... Unpacking debconf (1.5.72) over (1.5.69) ... Setting up debconf (1.5.72) ... (Reading database ... 12498 files and directories currently installed.) Preparing to unpack .../dash_0.5.10.2-6_s390x.deb ... Unpacking dash (0.5.10.2-6) over (0.5.10.2-2) ... Setting up dash (0.5.10.2-6) ... (Reading database ... 12499 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.7-3_s390x.deb ... Unpacking diffutils (1:3.7-3) over (1:3.6-1) ... Setting up diffutils (1:3.7-3) ... (Reading database ... 12499 files and directories currently installed.) Preparing to unpack .../findutils_4.6.0+git+20190209-2ubuntu1_s390x.deb ... Unpacking findutils (4.6.0+git+20190209-2ubuntu1) over (4.6.0+git+20181018-1) ... Setting up findutils (4.6.0+git+20190209-2ubuntu1) ... (Reading database ... 12499 files and directories currently installed.) Preparing to unpack .../archives/grep_3.3-1_s390x.deb ... Unpacking grep (3.3-1) over (3.1-3) ... Setting up grep (3.3-1) ... (Reading database ... 12499 files and directories currently installed.) Preparing to unpack .../gzip_1.10-0ubuntu1_s390x.deb ... Unpacking gzip (1.10-0ubuntu1) over (1.6-5ubuntu2) ... Setting up gzip (1.10-0ubuntu1) ... (Reading database ... 12499 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.33.1-0.1ubuntu2_s390x.deb ... Unpacking libsmartcols1:s390x (2.33.1-0.1ubuntu2) over (2.32-0.1ubuntu2) ... Setting up libsmartcols1:s390x (2.33.1-0.1ubuntu2) ... (Reading database ... 12499 files and directories currently installed.) Preparing to unpack .../libuuid1_2.33.1-0.1ubuntu2_s390x.deb ... Unpacking libuuid1:s390x (2.33.1-0.1ubuntu2) over (2.32-0.1ubuntu2) ... Setting up libuuid1:s390x (2.33.1-0.1ubuntu2) ... (Reading database ... 12499 files and directories currently installed.) Preparing to unpack .../libblkid1_2.33.1-0.1ubuntu2_s390x.deb ... Unpacking libblkid1:s390x (2.33.1-0.1ubuntu2) over (2.32-0.1ubuntu2) ... Setting up libblkid1:s390x (2.33.1-0.1ubuntu2) ... (Reading database ... 12499 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.33.1-0.1ubuntu2_s390x.deb ... Unpacking libfdisk1:s390x (2.33.1-0.1ubuntu2) over (2.32-0.1ubuntu2) ... Setting up libfdisk1:s390x (2.33.1-0.1ubuntu2) ... Selecting previously unselected package libpcre2-8-0:s390x. (Reading database ... 12499 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.32-5_s390x.deb ... Unpacking libpcre2-8-0:s390x (10.32-5) ... Setting up libpcre2-8-0:s390x (10.32-5) ... (Reading database ... 12505 files and directories currently installed.) Preparing to unpack .../libselinux1_2.9-2_s390x.deb ... Unpacking libselinux1:s390x (2.9-2) over (2.8-1build2) ... Setting up libselinux1:s390x (2.9-2) ... (Reading database ... 12505 files and directories currently installed.) Preparing to unpack .../libmount1_2.33.1-0.1ubuntu2_s390x.deb ... Unpacking libmount1:s390x (2.33.1-0.1ubuntu2) over (2.32-0.1ubuntu2) ... Setting up libmount1:s390x (2.33.1-0.1ubuntu2) ... (Reading database ... 12505 files and directories currently installed.) Preparing to unpack .../libncurses6_6.1+20190713-1ubuntu1_s390x.deb ... Unpacking libncurses6:s390x (6.1+20190713-1ubuntu1) over (6.1+20180210-4ubuntu1) ... Preparing to unpack .../libtinfo6_6.1+20190713-1ubuntu1_s390x.deb ... Unpacking libtinfo6:s390x (6.1+20190713-1ubuntu1) over (6.1+20180210-4ubuntu1) ... Setting up libtinfo6:s390x (6.1+20190713-1ubuntu1) ... (Reading database ... 12505 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.1+20190713-1ubuntu1_s390x.deb ... Unpacking libncursesw6:s390x (6.1+20190713-1ubuntu1) over (6.1+20180210-4ubuntu1) ... Setting up libncursesw6:s390x (6.1+20190713-1ubuntu1) ... (Reading database ... 12505 files and directories currently installed.) Preparing to unpack .../fdisk_2.33.1-0.1ubuntu2_s390x.deb ... Unpacking fdisk (2.33.1-0.1ubuntu2) over (2.32-0.1ubuntu2) ... Setting up fdisk (2.33.1-0.1ubuntu2) ... (Reading database ... 12508 files and directories currently installed.) Preparing to unpack .../util-linux_2.33.1-0.1ubuntu2_s390x.deb ... Unpacking util-linux (2.33.1-0.1ubuntu2) over (2.32-0.1ubuntu2) ... Replacing files in old package login (1:4.5-1ubuntu1) ... Preparing to unpack .../login_1%3a4.5-1.1ubuntu2_s390x.deb ... Unpacking login (1:4.5-1.1ubuntu2) over (1:4.5-1ubuntu1) ... Setting up login (1:4.5-1.1ubuntu2) ... (Reading database ... 12512 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.1+20190713-1ubuntu1_s390x.deb ... Unpacking ncurses-bin (6.1+20190713-1ubuntu1) over (6.1+20180210-4ubuntu1) ... Setting up ncurses-bin (6.1+20190713-1ubuntu1) ... (Reading database ... 12512 files and directories currently installed.) Preparing to unpack .../archives/sed_4.7-1_s390x.deb ... Unpacking sed (4.7-1) over (4.5-2) ... Setting up sed (4.7-1) ... (Reading database ... 12512 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.249ubuntu1_s390x.deb ... Unpacking libdebconfclient0:s390x (0.249ubuntu1) over (0.244ubuntu1) ... Setting up libdebconfclient0:s390x (0.249ubuntu1) ... (Reading database ... 12512 files and directories currently installed.) Preparing to unpack .../base-passwd_3.5.46_s390x.deb ... Unpacking base-passwd (3.5.46) over (3.5.45) ... Setting up base-passwd (3.5.46) ... (Reading database ... 12512 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.57_all.deb ... Unpacking init-system-helpers (1.57) over (1.56) ... Setting up init-system-helpers (1.57) ... (Reading database ... 12512 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.1+20181013-2ubuntu2_all.deb ... Unpacking ncurses-base (6.1+20181013-2ubuntu2) over (6.1+20180210-4ubuntu1) ... Setting up ncurses-base (6.1+20181013-2ubuntu2) ... (Reading database ... 12512 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.93-8ubuntu1_s390x.deb ... Unpacking sysvinit-utils (2.93-8ubuntu1) over (2.88dsf-59.10ubuntu2) ... Setting up util-linux (2.33.1-0.1ubuntu2) ... Setting up sysvinit-utils (2.93-8ubuntu1) ... (Reading database ... 12512 files and directories currently installed.) Preparing to unpack .../liblz4-1_1.9.1-1_s390x.deb ... Unpacking liblz4-1:s390x (1.9.1-1) over (1.8.2-1ubuntu1) ... Setting up liblz4-1:s390x (1.9.1-1) ... (Reading database ... 12512 files and directories currently installed.) Preparing to unpack .../liblzma5_5.2.4-1_s390x.deb ... Unpacking liblzma5:s390x (5.2.4-1) over (5.2.2-1.3) ... Setting up liblzma5:s390x (5.2.4-1) ... (Reading database ... 12512 files and directories currently installed.) Preparing to unpack .../libstdc++6_9.1.0-9ubuntu2_s390x.deb ... Unpacking libstdc++6:s390x (9.1.0-9ubuntu2) over (8.2.0-12ubuntu1) ... Setting up libstdc++6:s390x (9.1.0-9ubuntu2) ... (Reading database ... 12512 files and directories currently installed.) Preparing to unpack .../libnettle6_3.4.1-1_s390x.deb ... Unpacking libnettle6:s390x (3.4.1-1) over (3.4.1~rc1-1) ... Setting up libnettle6:s390x (3.4.1-1) ... (Reading database ... 12512 files and directories currently installed.) Preparing to unpack .../libhogweed4_3.4.1-1_s390x.deb ... Unpacking libhogweed4:s390x (3.4.1-1) over (3.4.1~rc1-1) ... Setting up libhogweed4:s390x (3.4.1-1) ... (Reading database ... 12512 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.23.15-2_s390x.deb ... Unpacking libp11-kit0:s390x (0.23.15-2) over (0.23.14-2) ... Setting up libp11-kit0:s390x (0.23.15-2) ... (Reading database ... 12512 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.13-4_s390x.deb ... Unpacking libtasn1-6:s390x (4.13-4) over (4.13-3) ... Setting up libtasn1-6:s390x (4.13-4) ... (Reading database ... 12512 files and directories currently installed.) Preparing to unpack .../libunistring2_0.9.10-2_s390x.deb ... Unpacking libunistring2:s390x (0.9.10-2) over (0.9.10-1ubuntu1) ... Setting up libunistring2:s390x (0.9.10-2) ... (Reading database ... 12512 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.6.8-2_s390x.deb ... Unpacking libgnutls30:s390x (3.6.8-2) over (3.6.4-2ubuntu2) ... Setting up libgnutls30:s390x (3.6.8-2) ... (Reading database ... 12512 files and directories currently installed.) Preparing to unpack .../systemd-sysv_240-6ubuntu9_s390x.deb ... Unpacking systemd-sysv (240-6ubuntu9) over (239-7ubuntu15) ... Preparing to unpack .../libacl1_2.2.53-4_s390x.deb ... Unpacking libacl1:s390x (2.2.53-4) over (2.2.52-3build1) ... Setting up libacl1:s390x (2.2.53-4) ... (Reading database ... 12512 files and directories currently installed.) Preparing to unpack .../libapparmor1_2.13.2-9ubuntu7_s390x.deb ... Unpacking libapparmor1:s390x (2.13.2-9ubuntu7) over (2.12-4ubuntu10) ... Preparing to unpack .../libaudit-common_1%3a2.8.5-1ubuntu1_all.deb ... Unpacking libaudit-common (1:2.8.5-1ubuntu1) over (1:2.8.3-1ubuntu3) ... Setting up libaudit-common (1:2.8.5-1ubuntu1) ... (Reading database ... 12512 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.7.9-2_s390x.deb ... Unpacking libcap-ng0:s390x (0.7.9-2) over (0.7.9-1build1) ... Setting up libcap-ng0:s390x (0.7.9-2) ... (Reading database ... 12512 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a2.8.5-1ubuntu1_s390x.deb ... Unpacking libaudit1:s390x (1:2.8.5-1ubuntu1) over (1:2.8.3-1ubuntu3) ... Setting up libaudit1:s390x (1:2.8.5-1ubuntu1) ... (Reading database ... 12512 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.25-2_s390x.deb ... Unpacking libcap2:s390x (1:2.25-2) over (1:2.25-1.2) ... Selecting previously unselected package libjson-c4:s390x. Preparing to unpack .../libjson-c4_0.13.1+dfsg-2_s390x.deb ... Unpacking libjson-c4:s390x (0.13.1+dfsg-2) ... Preparing to unpack .../libargon2-1_0~20171227-0.2_s390x.deb ... Unpacking libargon2-1:s390x (0~20171227-0.2) over (0~20171227-0.1) ... Preparing to unpack .../libudev1_240-6ubuntu9_s390x.deb ... Unpacking libudev1:s390x (240-6ubuntu9) over (239-7ubuntu15) ... Setting up libudev1:s390x (240-6ubuntu9) ... (Reading database ... 12519 files and directories currently installed.) Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.155-2ubuntu4_s390x.deb ... Unpacking libdevmapper1.02.1:s390x (2:1.02.155-2ubuntu4) over (2:1.02.145-4.1ubuntu4) ... Preparing to unpack .../libssl1.1_1.1.1c-1ubuntu3_s390x.deb ... Unpacking libssl1.1:s390x (1.1.1c-1ubuntu3) over (1.1.1a-1ubuntu2) ... Preparing to unpack .../libcryptsetup12_2%3a2.1.0-5ubuntu2_s390x.deb ... Unpacking libcryptsetup12:s390x (2:2.1.0-5ubuntu2) over (2:2.0.4-2ubuntu2) ... Preparing to unpack .../libgpg-error0_1.36-7_s390x.deb ... Unpacking libgpg-error0:s390x (1.36-7) over (1.32-3) ... Setting up libgpg-error0:s390x (1.36-7) ... (Reading database ... 12519 files and directories currently installed.) Preparing to unpack .../libidn11_1.33-2.2ubuntu2_s390x.deb ... Unpacking libidn11:s390x (1.33-2.2ubuntu2) over (1.33-2.2ubuntu1) ... Preparing to unpack .../libkmod2_26-1ubuntu1_s390x.deb ... Unpacking libkmod2:s390x (26-1ubuntu1) over (25-1ubuntu2) ... Preparing to unpack .../libpam0g_1.3.1-5ubuntu1_s390x.deb ... Unpacking libpam0g:s390x (1.3.1-5ubuntu1) over (1.1.8-3.6ubuntu2) ... Setting up libpam0g:s390x (1.3.1-5ubuntu1) ... Checking for services that may need to be restarted...Checking init scripts... Nothing to restart. (Reading database ... 12519 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.4.1-0ubuntu0.19.10.3_s390x.deb ... Unpacking libseccomp2:s390x (2.4.1-0ubuntu0.19.10.3) over (2.3.3-3ubuntu2) ... Setting up libseccomp2:s390x (2.4.1-0ubuntu0.19.10.3) ... (Reading database ... 12519 files and directories currently installed.) Preparing to unpack .../mount_2.33.1-0.1ubuntu2_s390x.deb ... Unpacking mount (2.33.1-0.1ubuntu2) over (2.32-0.1ubuntu2) ... Preparing to unpack .../libsepol1_2.9-2_s390x.deb ... Unpacking libsepol1:s390x (2.9-2) over (2.8-1) ... Setting up libsepol1:s390x (2.9-2) ... (Reading database ... 12519 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.9-2_all.deb ... Unpacking libsemanage-common (2.9-2) over (2.8-1build2) ... Setting up libsemanage-common (2.9-2) ... (Reading database ... 12520 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.9-2_s390x.deb ... Unpacking libsemanage1:s390x (2.9-2) over (2.8-1build2) ... Setting up libsemanage1:s390x (2.9-2) ... (Reading database ... 12520 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.3.1-5ubuntu1_s390x.deb ... Unpacking libpam-modules-bin (1.3.1-5ubuntu1) over (1.1.8-3.6ubuntu2) ... Setting up libpam-modules-bin (1.3.1-5ubuntu1) ... (Reading database ... 12520 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.3.1-5ubuntu1_s390x.deb ... Unpacking libpam-modules:s390x (1.3.1-5ubuntu1) over (1.1.8-3.6ubuntu2) ... Setting up libpam-modules:s390x (1.3.1-5ubuntu1) ... Installing new version of config file /etc/security/access.conf ... Installing new version of config file /etc/security/limits.conf ... (Reading database ... 12520 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.5-1.1ubuntu2_s390x.deb ... Unpacking passwd (1:4.5-1.1ubuntu2) over (1:4.5-1ubuntu1) ... Setting up passwd (1:4.5-1.1ubuntu2) ... (Reading database ... 12520 files and directories currently installed.) Preparing to unpack .../adduser_3.118ubuntu1_all.deb ... Unpacking adduser (3.118ubuntu1) over (3.117ubuntu1) ... Setting up adduser (3.118ubuntu1) ... (Reading database ... 12520 files and directories currently installed.) Preparing to unpack .../systemd_240-6ubuntu9_s390x.deb ... Unpacking systemd (240-6ubuntu9) over (239-7ubuntu15) ... Preparing to unpack .../libsystemd0_240-6ubuntu9_s390x.deb ... Unpacking libsystemd0:s390x (240-6ubuntu9) over (239-7ubuntu15) ... Setting up libsystemd0:s390x (240-6ubuntu9) ... (Reading database ... 12536 files and directories currently installed.) Preparing to unpack .../libzstd1_1.3.8+dfsg-3_s390x.deb ... Unpacking libzstd1:s390x (1.3.8+dfsg-3) over (1.3.5+dfsg-1ubuntu1) ... Setting up libzstd1:s390x (1.3.8+dfsg-3) ... Selecting previously unselected package libapt-pkg5.90:s390x. (Reading database ... 12536 files and directories currently installed.) Preparing to unpack .../libapt-pkg5.90_1.9.1_s390x.deb ... Unpacking libapt-pkg5.90:s390x (1.9.1) ... Setting up libapt-pkg5.90:s390x (1.9.1) ... (Reading database ... 12585 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.8.4-5ubuntu1_s390x.deb ... Unpacking libgcrypt20:s390x (1.8.4-5ubuntu1) over (1.8.4-3ubuntu1) ... Setting up libgcrypt20:s390x (1.8.4-5ubuntu1) ... (Reading database ... 12585 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.12-1ubuntu3_s390x.deb ... Unpacking gpgv (2.2.12-1ubuntu3) over (2.2.8-3ubuntu1) ... Setting up gpgv (2.2.12-1ubuntu3) ... (Reading database ... 12585 files and directories currently installed.) Preparing to unpack .../archives/apt_1.9.1_s390x.deb ... Unpacking apt (1.9.1) over (1.8.0~alpha2ubuntu1) ... Setting up apt (1.9.1) ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... (Reading database ... 12608 files and directories currently installed.) Preparing to unpack .../libext2fs2_1.45.2-1ubuntu1_s390x.deb ... Unpacking libext2fs2:s390x (1.45.2-1ubuntu1) over (1.44.4-2ubuntu1) ... Setting up libext2fs2:s390x (1.45.2-1ubuntu1) ... (Reading database ... 12607 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.45.2-1ubuntu1_s390x.deb ... Unpacking e2fsprogs (1.45.2-1ubuntu1) over (1.44.4-2ubuntu1) ... Setting up libapparmor1:s390x (2.13.2-9ubuntu7) ... Setting up libcap2:s390x (1:2.25-2) ... Setting up libargon2-1:s390x (0~20171227-0.2) ... Setting up libdevmapper1.02.1:s390x (2:1.02.155-2ubuntu4) ... Setting up libjson-c4:s390x (0.13.1+dfsg-2) ... Setting up libssl1.1:s390x (1.1.1c-1ubuntu3) ... Setting up libcryptsetup12:s390x (2:2.1.0-5ubuntu2) ... Setting up libidn11:s390x (1.33-2.2ubuntu2) ... Setting up libkmod2:s390x (26-1ubuntu1) ... Setting up mount (2.33.1-0.1ubuntu2) ... Setting up systemd (240-6ubuntu9) ... Installing new version of config file /etc/dhcp/dhclient-enter-hooks.d/resolved ... Installing new version of config file /etc/systemd/journald.conf ... Installing new version of config file /etc/systemd/resolved.conf ... Installing new version of config file /etc/systemd/system.conf ... Setting up systemd-sysv (240-6ubuntu9) ... (Reading database ... 12623 files and directories currently installed.) Preparing to unpack .../archives/init_1.57_s390x.deb ... Unpacking init (1.57) over (1.56) ... Preparing to unpack .../libattr1_1%3a2.4.48-4_s390x.deb ... Unpacking libattr1:s390x (1:2.4.48-4) over (1:2.4.47-2build1) ... Setting up libattr1:s390x (1:2.4.48-4) ... (Reading database ... 12624 files and directories currently installed.) Preparing to unpack .../libpam-runtime_1.3.1-5ubuntu1_all.deb ... Unpacking libpam-runtime (1.3.1-5ubuntu1) over (1.1.8-3.6ubuntu2) ... Setting up libpam-runtime (1.3.1-5ubuntu1) ... (Reading database ... 12624 files and directories currently installed.) Preparing to unpack .../libpcre3_2%3a8.39-12_s390x.deb ... Unpacking libpcre3:s390x (2:8.39-12) over (2:8.39-11) ... Setting up libpcre3:s390x (2:8.39-12) ... (Reading database ... 12624 files and directories currently installed.) Preparing to unpack .../00-libcom-err2_1.45.2-1ubuntu1_s390x.deb ... Unpacking libcom-err2:s390x (1.45.2-1ubuntu1) over (1.44.4-2ubuntu1) ... Preparing to unpack .../01-libprocps7_2%3a3.3.15-2ubuntu2_s390x.deb ... Unpacking libprocps7:s390x (2:3.3.15-2ubuntu2) over (2:3.3.15-2ubuntu1) ... Preparing to unpack .../02-libss2_1.45.2-1ubuntu1_s390x.deb ... Unpacking libss2:s390x (1.45.2-1ubuntu1) over (1.44.4-2ubuntu1) ... Preparing to unpack .../03-procps_2%3a3.3.15-2ubuntu2_s390x.deb ... Unpacking procps (2:3.3.15-2ubuntu2) over (2:3.3.15-2ubuntu1) ... Preparing to unpack .../04-openssl_1.1.1c-1ubuntu3_s390x.deb ... Unpacking openssl (1.1.1c-1ubuntu3) over (1.1.1a-1ubuntu2) ... Preparing to unpack .../05-ca-certificates_20190110_all.deb ... Unpacking ca-certificates (20190110) over (20180409) ... Preparing to unpack .../06-dmsetup_2%3a1.02.155-2ubuntu4_s390x.deb ... Unpacking dmsetup (2:1.02.155-2ubuntu4) over (2:1.02.145-4.1ubuntu4) ... Preparing to unpack .../07-readline-common_8.0-2_all.deb ... Unpacking readline-common (8.0-2) over (7.0-5) ... Selecting previously unselected package libreadline8:s390x. Preparing to unpack .../08-libreadline8_8.0-2_s390x.deb ... Unpacking libreadline8:s390x (8.0-2) ... Preparing to unpack .../09-libslang2_2.3.2-4_s390x.deb ... Unpacking libslang2:s390x (2.3.2-4) over (2.3.2-1ubuntu1) ... Preparing to unpack .../10-libsqlite3-0_3.29.0-1_s390x.deb ... Unpacking libsqlite3-0:s390x (3.29.0-1) over (3.26.0-2) ... Preparing to unpack .../11-tzdata_2019b-1_all.deb ... Unpacking tzdata (2019b-1) over (2018g-1) ... Preparing to unpack .../12-xz-utils_5.2.4-1_s390x.deb ... Unpacking xz-utils (5.2.4-1) over (5.2.2-1.3) ... Preparing to unpack .../13-libpng16-16_1.6.37-1_s390x.deb ... Unpacking libpng16-16:s390x (1.6.37-1) over (1.6.34-2) ... Preparing to unpack .../14-multiarch-support_2.29-0ubuntu3_s390x.deb ... Unpacking multiarch-support (2.29-0ubuntu3) over (2.28-0ubuntu1) ... Preparing to unpack .../15-advancecomp_2.1-2.1_s390x.deb ... Unpacking advancecomp (2.1-2.1) over (2.1-1) ... Preparing to unpack .../16-binutils-s390x-linux-gnu_2.32.51.20190702-1ubuntu1_s390x.deb ... Unpacking binutils-s390x-linux-gnu (2.32.51.20190702-1ubuntu1) over (2.31.1-10ubuntu1) ... Preparing to unpack .../17-libbinutils_2.32.51.20190702-1ubuntu1_s390x.deb ... Unpacking libbinutils:s390x (2.32.51.20190702-1ubuntu1) over (2.31.1-10ubuntu1) ... Preparing to unpack .../18-binutils_2.32.51.20190702-1ubuntu1_s390x.deb ... Unpacking binutils (2.32.51.20190702-1ubuntu1) over (2.31.1-10ubuntu1) ... Preparing to unpack .../19-binutils-common_2.32.51.20190702-1ubuntu1_s390x.deb ... Unpacking binutils-common:s390x (2.32.51.20190702-1ubuntu1) over (2.31.1-10ubuntu1) ... Selecting previously unselected package libisl21:s390x. Preparing to unpack .../20-libisl21_0.21-1_s390x.deb ... Unpacking libisl21:s390x (0.21-1) ... Preparing to unpack .../21-libmpfr6_4.0.2-1_s390x.deb ... Unpacking libmpfr6:s390x (4.0.2-1) over (4.0.1-2) ... Selecting previously unselected package cpp-9. Preparing to unpack .../22-cpp-9_9.1.0-9ubuntu2_s390x.deb ... Unpacking cpp-9 (9.1.0-9ubuntu2) ... Preparing to unpack .../23-g++_4%3a9.1.0-1ubuntu4_s390x.deb ... Unpacking g++ (4:9.1.0-1ubuntu4) over (4:8.2.0-2ubuntu2) ... Preparing to unpack .../24-gcc_4%3a9.1.0-1ubuntu4_s390x.deb ... Unpacking gcc (4:9.1.0-1ubuntu4) over (4:8.2.0-2ubuntu2) ... Preparing to unpack .../25-cpp_4%3a9.1.0-1ubuntu4_s390x.deb ... Unpacking cpp (4:9.1.0-1ubuntu4) over (4:8.2.0-2ubuntu2) ... Preparing to unpack .../26-libcc1-0_9.1.0-9ubuntu2_s390x.deb ... Unpacking libcc1-0:s390x (9.1.0-9ubuntu2) over (8.2.0-12ubuntu1) ... Preparing to unpack .../27-libgomp1_9.1.0-9ubuntu2_s390x.deb ... Unpacking libgomp1:s390x (9.1.0-9ubuntu2) over (8.2.0-12ubuntu1) ... Preparing to unpack .../28-libitm1_9.1.0-9ubuntu2_s390x.deb ... Unpacking libitm1:s390x (9.1.0-9ubuntu2) over (8.2.0-12ubuntu1) ... Preparing to unpack .../29-libatomic1_9.1.0-9ubuntu2_s390x.deb ... Unpacking libatomic1:s390x (9.1.0-9ubuntu2) over (8.2.0-12ubuntu1) ... Preparing to unpack .../30-libasan5_9.1.0-9ubuntu2_s390x.deb ... Unpacking libasan5:s390x (9.1.0-9ubuntu2) over (8.2.0-12ubuntu1) ... Preparing to unpack .../31-libubsan1_9.1.0-9ubuntu2_s390x.deb ... Unpacking libubsan1:s390x (9.1.0-9ubuntu2) over (8.2.0-12ubuntu1) ... Selecting previously unselected package libgcc-9-dev:s390x. Preparing to unpack .../32-libgcc-9-dev_9.1.0-9ubuntu2_s390x.deb ... Unpacking libgcc-9-dev:s390x (9.1.0-9ubuntu2) ... Selecting previously unselected package gcc-9. Preparing to unpack .../33-gcc-9_9.1.0-9ubuntu2_s390x.deb ... Unpacking gcc-9 (9.1.0-9ubuntu2) ... Selecting previously unselected package libstdc++-9-dev:s390x. Preparing to unpack .../34-libstdc++-9-dev_9.1.0-9ubuntu2_s390x.deb ... Unpacking libstdc++-9-dev:s390x (9.1.0-9ubuntu2) ... Selecting previously unselected package g++-9. Preparing to unpack .../35-g++-9_9.1.0-9ubuntu2_s390x.deb ... Unpacking g++-9 (9.1.0-9ubuntu2) ... Preparing to unpack .../36-dpkg-dev_1.19.7ubuntu1_all.deb ... Unpacking dpkg-dev (1.19.7ubuntu1) over (1.19.2ubuntu1) ... Preparing to unpack .../37-libdpkg-perl_1.19.7ubuntu1_all.deb ... Unpacking libdpkg-perl (1.19.7ubuntu1) over (1.19.2ubuntu1) ... Preparing to unpack .../38-patch_2.7.6-4_s390x.deb ... Unpacking patch (2.7.6-4) over (2.7.6-3) ... Preparing to unpack .../39-build-essential_12.6ubuntu1_s390x.deb ... Unpacking build-essential (12.6ubuntu1) over (12.5ubuntu2) ... Preparing to unpack .../40-g++-8_8.3.0-19ubuntu1_s390x.deb ... Unpacking g++-8 (8.3.0-19ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../41-gcc-8_8.3.0-19ubuntu1_s390x.deb ... Unpacking gcc-8 (8.3.0-19ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../42-libstdc++-8-dev_8.3.0-19ubuntu1_s390x.deb ... Unpacking libstdc++-8-dev:s390x (8.3.0-19ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../43-libgcc-8-dev_8.3.0-19ubuntu1_s390x.deb ... Unpacking libgcc-8-dev:s390x (8.3.0-19ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../44-cpp-8_8.3.0-19ubuntu1_s390x.deb ... Unpacking cpp-8 (8.3.0-19ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../45-gcc-8-base_8.3.0-19ubuntu1_s390x.deb ... Unpacking gcc-8-base:s390x (8.3.0-19ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../46-e2fslibs_1.45.2-1ubuntu1_s390x.deb ... Unpacking e2fslibs:s390x (1.45.2-1ubuntu1) over (1.44.4-2ubuntu1) ... Preparing to unpack .../47-libassuan0_2.5.3-7ubuntu1_s390x.deb ... Unpacking libassuan0:s390x (2.5.3-7ubuntu1) over (2.5.1-2) ... Preparing to unpack .../48-pinentry-curses_1.1.0-2_s390x.deb ... Unpacking pinentry-curses (1.1.0-2) over (1.1.0-1build2) ... Preparing to unpack .../49-gpg_2.2.12-1ubuntu3_s390x.deb ... Unpacking gpg (2.2.12-1ubuntu3) over (2.2.8-3ubuntu1) ... Preparing to unpack .../50-gpgconf_2.2.12-1ubuntu3_s390x.deb ... Unpacking gpgconf (2.2.12-1ubuntu3) over (2.2.8-3ubuntu1) ... Preparing to unpack .../51-gpg-agent_2.2.12-1ubuntu3_s390x.deb ... Unpacking gpg-agent (2.2.12-1ubuntu3) over (2.2.8-3ubuntu1) ... Preparing to unpack .../52-libcomerr2_1.45.2-1ubuntu1_s390x.deb ... Unpacking libcomerr2:s390x (1.45.2-1ubuntu1) over (1.44.4-2ubuntu1) ... Preparing to unpack .../53-optipng_0.7.7-1_s390x.deb ... Unpacking optipng (0.7.7-1) over (0.7.6-1.1) ... Preparing to unpack .../54-pkgbinarymangler_144_all.deb ... Unpacking pkgbinarymangler (144) over (143) ... Setting up perl-modules-5.28 (5.28.1-6) ... Setting up libisl21:s390x (0.21-1) ... Setting up lsb-base (10.2019051400ubuntu1) ... Setting up e2fslibs:s390x (1.45.2-1ubuntu1) ... Setting up init (1.57) ... Setting up libprocps7:s390x (2:3.3.15-2ubuntu2) ... Setting up libsqlite3-0:s390x (3.29.0-1) ... Setting up binutils-common:s390x (2.32.51.20190702-1ubuntu1) ... Setting up linux-libc-dev:s390x (5.2.0-8.9) ... Setting up libcom-err2:s390x (1.45.2-1ubuntu1) ... Setting up libassuan0:s390x (2.5.3-7ubuntu1) ... Setting up libgomp1:s390x (9.1.0-9ubuntu2) ... Setting up bzip2 (1.0.6-9.2) ... Setting up tzdata (2019b-1) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Jul 20 17:45:08 UTC 2019. Universal Time is now: Sat Jul 20 17:45:08 UTC 2019. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libasan5:s390x (9.1.0-9ubuntu2) ... Setting up libslang2:s390x (2.3.2-4) ... Setting up multiarch-support (2.29-0ubuntu3) ... Setting up libmpfr6:s390x (4.0.2-1) ... Setting up libncurses6:s390x (6.1+20190713-1ubuntu1) ... Setting up xz-utils (5.2.4-1) ... Setting up libpng16-16:s390x (1.6.37-1) ... Setting up libatomic1:s390x (9.1.0-9ubuntu2) ... Setting up patch (2.7.6-4) ... Setting up libss2:s390x (1.45.2-1ubuntu1) ... Setting up gcc-8-base:s390x (8.3.0-19ubuntu1) ... Setting up libubsan1:s390x (9.1.0-9ubuntu2) ... Setting up advancecomp (2.1-2.1) ... Setting up dmsetup (2:1.02.155-2ubuntu4) ... Setting up libcomerr2:s390x (1.45.2-1ubuntu1) ... Setting up procps (2:3.3.15-2ubuntu2) ... Installing new version of config file /etc/sysctl.d/10-network-security.conf ... Setting up cpp-9 (9.1.0-9ubuntu2) ... Setting up libbinutils:s390x (2.32.51.20190702-1ubuntu1) ... Setting up cpp-8 (8.3.0-19ubuntu1) ... Setting up libc-dev-bin (2.29-0ubuntu3) ... Setting up openssl (1.1.1c-1ubuntu3) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up readline-common (8.0-2) ... Setting up libcc1-0:s390x (9.1.0-9ubuntu2) ... Setting up libitm1:s390x (9.1.0-9ubuntu2) ... Setting up libgdbm6:s390x (1.18.1-4) ... Setting up pinentry-curses (1.1.0-2) ... Setting up binutils-s390x-linux-gnu (2.32.51.20190702-1ubuntu1) ... Setting up libreadline8:s390x (8.0-2) ... Setting up e2fsprogs (1.45.2-1ubuntu1) ... Installing new version of config file /etc/mke2fs.conf ... Created symlink /etc/systemd/system/timers.target.wants/e2scrub_all.timer -> /lib/systemd/system/e2scrub_all.timer. Created symlink /etc/systemd/system/default.target.wants/e2scrub_reap.service -> /lib/systemd/system/e2scrub_reap.service. Setting up binutils (2.32.51.20190702-1ubuntu1) ... Setting up libgcc-9-dev:s390x (9.1.0-9ubuntu2) ... Setting up ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 2 added, 7 removed; done. Setting up optipng (0.7.7-1) ... Setting up libgdbm-compat4:s390x (1.18.1-4) ... Setting up libgcc-8-dev:s390x (8.3.0-19ubuntu1) ... Setting up libperl5.28:s390x (5.28.1-6) ... Setting up cpp (4:9.1.0-1ubuntu4) ... Setting up gpgconf (2.2.12-1ubuntu3) ... Setting up libc6-dev:s390x (2.29-0ubuntu3) ... Setting up gpg (2.2.12-1ubuntu3) ... Setting up libstdc++-8-dev:s390x (8.3.0-19ubuntu1) ... Setting up gcc-9 (9.1.0-9ubuntu2) ... Setting up gcc-8 (8.3.0-19ubuntu1) ... Setting up gpg-agent (2.2.12-1ubuntu3) ... Setting up libstdc++-9-dev:s390x (9.1.0-9ubuntu2) ... Setting up pkgbinarymangler (144) ... Setting up gcc (4:9.1.0-1ubuntu4) ... Setting up perl (5.28.1-6) ... Setting up g++-9 (9.1.0-9ubuntu2) ... Setting up libdpkg-perl (1.19.7ubuntu1) ... Setting up g++ (4:9.1.0-1ubuntu4) ... Setting up g++-8 (8.3.0-19ubuntu1) ... Setting up dpkg-dev (1.19.7ubuntu1) ... Setting up build-essential (12.6ubuntu1) ... Processing triggers for systemd (240-6ubuntu9) ... Processing triggers for libc-bin (2.29-0ubuntu3) ... Processing triggers for ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-17293359 s390x eoan-proposed -c chroot:build-PACKAGEBUILD-17293359 --arch=s390x --dist=eoan-proposed --nolog r-bioc-shortread_1.42.0-1.dsc Initiating build PACKAGEBUILD-17293359 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-155-generic #182-Ubuntu SMP Tue Jul 2 14:41:35 UTC 2019 s390x sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-s390x-010.buildd +==============================================================================+ | r-bioc-shortread 1.42.0-1 (s390x) 20 Jul 2019 17:45 | +==============================================================================+ Package: r-bioc-shortread Version: 1.42.0-1 Source Version: 1.42.0-1 Distribution: eoan-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x I: NOTICE: Log filtering will replace 'build/r-bioc-shortread-vgEaNt/r-bioc-shortread-1.42.0' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-shortread-vgEaNt' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-17293359/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-bioc-shortread_1.42.0-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-LHlViu/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-LHlViu/apt_archive ./ InRelease Get:2 copy:/<>/resolver-LHlViu/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-LHlViu/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-LHlViu/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-LHlViu/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-8 libapt-pkg5.0 libisl19 libjson-c3 libreadline7 libstdc++-8-dev Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-LHlViu/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13656 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 12~), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.23.3), r-bioc-biocparallel, r-bioc-biostrings (>= 2.47.6), r-bioc-rsamtools (>= 1.31.2), r-bioc-genomicalignments (>= 1.15.6), r-bioc-biobase, r-bioc-s4vectors (>= 0.17.25), r-bioc-iranges (>= 2.13.12), r-bioc-genomeinfodb (>= 1.15.2), r-bioc-genomicranges (>= 1.31.8), r-cran-hwriter, r-bioc-zlibbioc, r-cran-lattice, r-cran-latticeextra, r-bioc-xvector Filtered Build-Depends: debhelper (>= 12~), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.23.3), r-bioc-biocparallel, r-bioc-biostrings (>= 2.47.6), r-bioc-rsamtools (>= 1.31.2), r-bioc-genomicalignments (>= 1.15.6), r-bioc-biobase, r-bioc-s4vectors (>= 0.17.25), r-bioc-iranges (>= 2.13.12), r-bioc-genomeinfodb (>= 1.15.2), r-bioc-genomicranges (>= 1.31.8), r-cran-hwriter, r-bioc-zlibbioc, r-cran-lattice, r-cran-latticeextra, r-bioc-xvector dpkg-deb: building package 'sbuild-build-depends-r-bioc-shortread-dummy' in '/<>/resolver-SCG7xU/apt_archive/sbuild-build-depends-r-bioc-shortread-dummy.deb'. Ign:1 copy:/<>/resolver-SCG7xU/apt_archive ./ InRelease Get:2 copy:/<>/resolver-SCG7xU/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-SCG7xU/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-SCG7xU/apt_archive ./ Sources [374 B] Get:5 copy:/<>/resolver-SCG7xU/apt_archive ./ Packages [700 B] Fetched 3193 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install r-bioc-shortread build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-8 libapt-pkg5.0 libisl19 libjson-c3 libreadline7 libstdc++-8-dev Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-9 groff-base icu-devtools intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libelf1 libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-9-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu-dev libicu63 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libncurses-dev libncurses5-dev libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix0 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db pkg-config po-debconf r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges r-bioc-rsamtools r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-bitops r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-hwriter r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-matrix r-cran-matrixstats r-cran-rcolorbrewer r-cran-rcurl r-cran-snow ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-9-multilib gfortran-9-doc libgfortran5-dbg libcoarrays-dev groff liblapack-doc krb5-doc krb5-user icu-doc liblzma-doc ncurses-doc readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk m4-doc apparmor less www-browser libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc r-bioc-variantannotation r-bioc-shortread r-cran-codetools r-cran-knitr r-cran-data.table r-bioc-bsgenome r-bioc-genomicfeatures r-bioc-rtracklayer r-bioc-gviz r-bioc-annotationhub r-bioc-graph r-cran-rmarkdown r-cran-jsonlite r-bioc-rhdf5 r-cran-testthat r-cran-shiny r-cran-base64enc r-cran-ggplot2 r-cran-xml r-cran-rmpi r-cran-rsprng r-cran-rlecuyer Recommended packages: devscripts curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libpng-tools publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl r-recommended r-doc-html r-cran-runit r-cran-batchjobs r-cran-doparallel r-cran-batchtools r-cran-rmpi r-bioc-genefilter r-bioc-shortread r-cran-digest r-bioc-annotate r-cran-testit r-cran-codetools r-cran-survival r-cran-testthat libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-9 groff-base icu-devtools intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libelf1 libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-9-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu-dev libicu63 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libncurses-dev libncurses5-dev libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix0 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db pkg-config po-debconf r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges r-bioc-rsamtools r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-bitops r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-hwriter r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-matrix r-cran-matrixstats r-cran-rcolorbrewer r-cran-rcurl r-cran-snow sbuild-build-depends-r-bioc-shortread-dummy ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 166 newly installed, 0 to remove and 0 not upgraded. Need to get 129 MB of archives. After this operation, 316 MB of additional disk space will be used. Get:1 copy:/<>/resolver-SCG7xU/apt_archive ./ sbuild-build-depends-r-bioc-shortread-dummy 0.invalid.0 [1020 B] Get:2 http://ftpmaster.internal/ubuntu eoan/main s390x libbsd0 s390x 0.9.1-2 [43.0 kB] Get:3 http://ftpmaster.internal/ubuntu eoan/main s390x bsdmainutils s390x 11.1.2ubuntu2 [181 kB] Get:4 http://ftpmaster.internal/ubuntu eoan/main s390x libuchardet0 s390x 0.0.6-3 [64.5 kB] Get:5 http://ftpmaster.internal/ubuntu eoan/main s390x groff-base s390x 1.22.4-3 [819 kB] Get:6 http://ftpmaster.internal/ubuntu eoan/main s390x libpipeline1 s390x 1.5.1-2 [24.5 kB] Get:7 http://ftpmaster.internal/ubuntu eoan/main s390x man-db s390x 2.8.5-2 [1087 kB] Get:8 http://ftpmaster.internal/ubuntu eoan-proposed/main s390x libmagic-mgc s390x 1:5.37-3 [210 kB] Get:9 http://ftpmaster.internal/ubuntu eoan-proposed/main s390x libmagic1 s390x 1:5.37-3 [72.0 kB] Get:10 http://ftpmaster.internal/ubuntu eoan-proposed/main s390x file s390x 1:5.37-3 [23.8 kB] Get:11 http://ftpmaster.internal/ubuntu eoan/main s390x libelf1 s390x 0.176-1.1 [41.4 kB] Get:12 http://ftpmaster.internal/ubuntu eoan/main s390x libexpat1 s390x 2.2.7-1 [69.4 kB] Get:13 http://ftpmaster.internal/ubuntu eoan/main s390x libfribidi0 s390x 1.0.5-3.1 [27.1 kB] Get:14 http://ftpmaster.internal/ubuntu eoan/main s390x libglib2.0-0 s390x 2.61.1-2 [1149 kB] Get:15 http://ftpmaster.internal/ubuntu eoan/main s390x libicu63 s390x 63.2-2 [8044 kB] Get:16 http://ftpmaster.internal/ubuntu eoan/main s390x libxml2 s390x 2.9.4+dfsg1-7ubuntu3 [553 kB] Get:17 http://ftpmaster.internal/ubuntu eoan/main s390x ucf all 3.0038+nmu1 [51.6 kB] Get:18 http://ftpmaster.internal/ubuntu eoan/main s390x gettext-base s390x 0.19.8.1-9 [48.1 kB] Get:19 http://ftpmaster.internal/ubuntu eoan/main s390x libkrb5support0 s390x 1.17-5 [30.4 kB] Get:20 http://ftpmaster.internal/ubuntu eoan/main s390x libk5crypto3 s390x 1.17-5 [77.4 kB] Get:21 http://ftpmaster.internal/ubuntu eoan/main s390x libkeyutils1 s390x 1.6-6 [9816 B] Get:22 http://ftpmaster.internal/ubuntu eoan/main s390x libkrb5-3 s390x 1.17-5 [307 kB] Get:23 http://ftpmaster.internal/ubuntu eoan/main s390x libgssapi-krb5-2 s390x 1.17-5 [110 kB] Get:24 http://ftpmaster.internal/ubuntu eoan/main s390x libpsl5 s390x 0.20.2-2 [49.8 kB] Get:25 http://ftpmaster.internal/ubuntu eoan/main s390x libxau6 s390x 1:1.0.8-1 [7420 B] Get:26 http://ftpmaster.internal/ubuntu eoan/main s390x libxdmcp6 s390x 1:1.1.2-3 [10.7 kB] Get:27 http://ftpmaster.internal/ubuntu eoan/main s390x libxcb1 s390x 1.13.1-2 [43.0 kB] Get:28 http://ftpmaster.internal/ubuntu eoan/main s390x libx11-data all 2:1.6.7-1 [113 kB] Get:29 http://ftpmaster.internal/ubuntu eoan/main s390x libx11-6 s390x 2:1.6.7-1 [544 kB] Get:30 http://ftpmaster.internal/ubuntu eoan/main s390x libxext6 s390x 2:1.3.3-1 [27.8 kB] Get:31 http://ftpmaster.internal/ubuntu eoan/main s390x libxmuu1 s390x 2:1.1.2-2 [9762 B] Get:32 http://ftpmaster.internal/ubuntu eoan/main s390x xauth s390x 1:1.0.10-1 [23.6 kB] Get:33 http://ftpmaster.internal/ubuntu eoan/main s390x libsigsegv2 s390x 2.12-2 [13.8 kB] Get:34 http://ftpmaster.internal/ubuntu eoan/main s390x m4 s390x 1.4.18-2 [194 kB] Get:35 http://ftpmaster.internal/ubuntu eoan/main s390x autoconf all 2.69-11 [322 kB] Get:36 http://ftpmaster.internal/ubuntu eoan/main s390x autotools-dev all 20180224.1 [39.6 kB] Get:37 http://ftpmaster.internal/ubuntu eoan/main s390x automake all 1:1.16.1-4ubuntu3 [522 kB] Get:38 http://ftpmaster.internal/ubuntu eoan/main s390x autopoint all 0.19.8.1-9 [412 kB] Get:39 http://ftpmaster.internal/ubuntu eoan/main s390x dctrl-tools s390x 2.24-3 [58.7 kB] Get:40 http://ftpmaster.internal/ubuntu eoan/main s390x libtool all 2.4.6-10 [194 kB] Get:41 http://ftpmaster.internal/ubuntu eoan/main s390x dh-autoreconf all 19 [16.1 kB] Get:42 http://ftpmaster.internal/ubuntu eoan/main s390x libarchive-zip-perl all 1.64-1 [84.9 kB] Get:43 http://ftpmaster.internal/ubuntu eoan/universe s390x libsub-override-perl all 0.09-2 [9532 B] Get:44 http://ftpmaster.internal/ubuntu eoan-proposed/main s390x libfile-stripnondeterminism-perl all 1.2.3-1 [14.4 kB] Get:45 http://ftpmaster.internal/ubuntu eoan-proposed/main s390x dh-strip-nondeterminism all 1.2.3-1 [5200 B] Get:46 http://ftpmaster.internal/ubuntu eoan/main s390x dwz s390x 0.12.20190716-1 [74.3 kB] Get:47 http://ftpmaster.internal/ubuntu eoan/main s390x libcroco3 s390x 0.6.12-3 [74.0 kB] Get:48 http://ftpmaster.internal/ubuntu eoan/main s390x gettext s390x 0.19.8.1-9 [858 kB] Get:49 http://ftpmaster.internal/ubuntu eoan/main s390x intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:50 http://ftpmaster.internal/ubuntu eoan/main s390x po-debconf all 1.0.21 [233 kB] Get:51 http://ftpmaster.internal/ubuntu eoan-proposed/main s390x debhelper all 12.2.3ubuntu1 [907 kB] Get:52 http://ftpmaster.internal/ubuntu eoan/main s390x zip s390x 3.0-11build1 [157 kB] Get:53 http://ftpmaster.internal/ubuntu eoan/main s390x unzip s390x 6.0-24ubuntu1 [157 kB] Get:54 http://ftpmaster.internal/ubuntu eoan/main s390x libpaper1 s390x 1.1.28 [12.7 kB] Get:55 http://ftpmaster.internal/ubuntu eoan/main s390x libpaper-utils s390x 1.1.28 [8184 B] Get:56 http://ftpmaster.internal/ubuntu eoan/main s390x xdg-utils all 1.1.3-1ubuntu2 [60.5 kB] Get:57 http://ftpmaster.internal/ubuntu eoan/main s390x libblas3 s390x 3.8.0-2 [116 kB] Get:58 http://ftpmaster.internal/ubuntu eoan/main s390x libfreetype6 s390x 2.9.1-3 [312 kB] Get:59 http://ftpmaster.internal/ubuntu eoan/main s390x fonts-dejavu-core all 2.37-1 [1041 kB] Get:60 http://ftpmaster.internal/ubuntu eoan/main s390x fontconfig-config all 2.13.1-2ubuntu2 [28.9 kB] Get:61 http://ftpmaster.internal/ubuntu eoan/main s390x libfontconfig1 s390x 2.13.1-2ubuntu2 [108 kB] Get:62 http://ftpmaster.internal/ubuntu eoan/main s390x libpixman-1-0 s390x 0.36.0-1 [136 kB] Get:63 http://ftpmaster.internal/ubuntu eoan/main s390x libxcb-render0 s390x 1.13.1-2 [14.6 kB] Get:64 http://ftpmaster.internal/ubuntu eoan/main s390x libxcb-shm0 s390x 1.13.1-2 [5472 B] Get:65 http://ftpmaster.internal/ubuntu eoan/main s390x libxrender1 s390x 1:0.9.10-1 [17.8 kB] Get:66 http://ftpmaster.internal/ubuntu eoan/main s390x libcairo2 s390x 1.16.0-4 [536 kB] Get:67 http://ftpmaster.internal/ubuntu eoan/main s390x libroken18-heimdal s390x 7.5.0+dfsg-3 [39.2 kB] Get:68 http://ftpmaster.internal/ubuntu eoan/main s390x libasn1-8-heimdal s390x 7.5.0+dfsg-3 [149 kB] Get:69 http://ftpmaster.internal/ubuntu eoan/main s390x libheimbase1-heimdal s390x 7.5.0+dfsg-3 [27.6 kB] Get:70 http://ftpmaster.internal/ubuntu eoan/main s390x libhcrypto4-heimdal s390x 7.5.0+dfsg-3 [82.0 kB] Get:71 http://ftpmaster.internal/ubuntu eoan/main s390x libwind0-heimdal s390x 7.5.0+dfsg-3 [47.3 kB] Get:72 http://ftpmaster.internal/ubuntu eoan/main s390x libhx509-5-heimdal s390x 7.5.0+dfsg-3 [98.0 kB] Get:73 http://ftpmaster.internal/ubuntu eoan/main s390x libkrb5-26-heimdal s390x 7.5.0+dfsg-3 [189 kB] Get:74 http://ftpmaster.internal/ubuntu eoan/main s390x libheimntlm0-heimdal s390x 7.5.0+dfsg-3 [14.1 kB] Get:75 http://ftpmaster.internal/ubuntu eoan/main s390x libgssapi3-heimdal s390x 7.5.0+dfsg-3 [86.9 kB] Get:76 http://ftpmaster.internal/ubuntu eoan/main s390x libsasl2-modules-db s390x 2.1.27+dfsg-1 [14.0 kB] Get:77 http://ftpmaster.internal/ubuntu eoan/main s390x libsasl2-2 s390x 2.1.27+dfsg-1 [46.4 kB] Get:78 http://ftpmaster.internal/ubuntu eoan/main s390x libldap-common all 2.4.47+dfsg-3ubuntu2 [16.6 kB] Get:79 http://ftpmaster.internal/ubuntu eoan/main s390x libldap-2.4-2 s390x 2.4.47+dfsg-3ubuntu2 [143 kB] Get:80 http://ftpmaster.internal/ubuntu eoan/main s390x libnghttp2-14 s390x 1.37.0-1 [75.1 kB] Get:81 http://ftpmaster.internal/ubuntu eoan/main s390x librtmp1 s390x 2.4+20151223.gitfa8646d.1-2 [51.1 kB] Get:82 http://ftpmaster.internal/ubuntu eoan-proposed/main s390x libssh-4 s390x 0.9.0-1 [180 kB] Get:83 http://ftpmaster.internal/ubuntu eoan/main s390x libcurl4 s390x 7.65.1-1ubuntu1 [212 kB] Get:84 http://ftpmaster.internal/ubuntu eoan/main s390x libjpeg-turbo8 s390x 2.0.1-0ubuntu2 [102 kB] Get:85 http://ftpmaster.internal/ubuntu eoan/main s390x libjpeg8 s390x 8c-2ubuntu8 [2142 B] Get:86 http://ftpmaster.internal/ubuntu eoan-proposed/main s390x libgfortran5 s390x 9.1.0-9ubuntu2 [335 kB] Get:87 http://ftpmaster.internal/ubuntu eoan/main s390x liblapack3 s390x 3.8.0-2 [1611 kB] Get:88 http://ftpmaster.internal/ubuntu eoan/main s390x fontconfig s390x 2.13.1-2ubuntu2 [171 kB] Get:89 http://ftpmaster.internal/ubuntu eoan/main s390x libthai-data all 0.1.28-2 [134 kB] Get:90 http://ftpmaster.internal/ubuntu eoan/main s390x libdatrie1 s390x 0.2.12-2 [18.1 kB] Get:91 http://ftpmaster.internal/ubuntu eoan/main s390x libthai0 s390x 0.1.28-2 [18.2 kB] Get:92 http://ftpmaster.internal/ubuntu eoan/main s390x libpango-1.0-0 s390x 1.42.4-6 [150 kB] Get:93 http://ftpmaster.internal/ubuntu eoan/main s390x libgraphite2-3 s390x 1.3.13-7 [66.6 kB] Get:94 http://ftpmaster.internal/ubuntu eoan/main s390x libharfbuzz0b s390x 2.5.3-1 [335 kB] Get:95 http://ftpmaster.internal/ubuntu eoan/main s390x libpangoft2-1.0-0 s390x 1.42.4-6 [33.6 kB] Get:96 http://ftpmaster.internal/ubuntu eoan/main s390x libpangocairo-1.0-0 s390x 1.42.4-6 [21.3 kB] Get:97 http://ftpmaster.internal/ubuntu eoan/main s390x libtcl8.6 s390x 8.6.9+dfsg-2 [829 kB] Get:98 http://ftpmaster.internal/ubuntu eoan/main s390x libjbig0 s390x 2.1-3.1build1 [26.3 kB] Get:99 http://ftpmaster.internal/ubuntu eoan/main s390x libwebp6 s390x 0.6.1-2 [149 kB] Get:100 http://ftpmaster.internal/ubuntu eoan/main s390x libtiff5 s390x 4.0.10-4 [147 kB] Get:101 http://ftpmaster.internal/ubuntu eoan/main s390x libxft2 s390x 2.3.2-2 [36.5 kB] Get:102 http://ftpmaster.internal/ubuntu eoan/main s390x x11-common all 1:7.7+19ubuntu12 [22.4 kB] Get:103 http://ftpmaster.internal/ubuntu eoan/main s390x libxss1 s390x 1:1.2.3-1 [7972 B] Get:104 http://ftpmaster.internal/ubuntu eoan/main s390x libtk8.6 s390x 8.6.9-2 [660 kB] Get:105 http://ftpmaster.internal/ubuntu eoan/main s390x libice6 s390x 2:1.0.9-2 [36.9 kB] Get:106 http://ftpmaster.internal/ubuntu eoan/main s390x libsm6 s390x 2:1.2.3-1 [15.2 kB] Get:107 http://ftpmaster.internal/ubuntu eoan/main s390x libxt6 s390x 1:1.1.5-1 [147 kB] Get:108 http://ftpmaster.internal/ubuntu eoan-proposed/universe s390x r-base-core s390x 3.6.1-2 [24.3 MB] Get:109 http://ftpmaster.internal/ubuntu eoan-proposed/main s390x libgfortran-9-dev s390x 9.1.0-9ubuntu2 [388 kB] Get:110 http://ftpmaster.internal/ubuntu eoan-proposed/main s390x gfortran-9 s390x 9.1.0-9ubuntu2 [8085 kB] Get:111 http://ftpmaster.internal/ubuntu eoan/main s390x gfortran s390x 4:9.1.0-1ubuntu4 [1364 B] Get:112 http://ftpmaster.internal/ubuntu eoan/main s390x libblas-dev s390x 3.8.0-2 [117 kB] Get:113 http://ftpmaster.internal/ubuntu eoan/main s390x liblapack-dev s390x 3.8.0-2 [1607 kB] Get:114 http://ftpmaster.internal/ubuntu eoan-proposed/main s390x libncurses-dev s390x 6.1+20190713-1ubuntu1 [316 kB] Get:115 http://ftpmaster.internal/ubuntu eoan-proposed/main s390x libncurses5-dev s390x 6.1+20190713-1ubuntu1 [996 B] Get:116 http://ftpmaster.internal/ubuntu eoan/main s390x libreadline-dev s390x 8.0-2 [136 kB] Get:117 http://ftpmaster.internal/ubuntu eoan/main s390x libjpeg-turbo8-dev s390x 2.0.1-0ubuntu2 [214 kB] Get:118 http://ftpmaster.internal/ubuntu eoan/main s390x libjpeg8-dev s390x 8c-2ubuntu8 [1612 B] Get:119 http://ftpmaster.internal/ubuntu eoan/main s390x libjpeg-dev s390x 8c-2ubuntu8 [1612 B] Get:120 http://ftpmaster.internal/ubuntu eoan/main s390x libpcre2-16-0 s390x 10.32-5 [96.1 kB] Get:121 http://ftpmaster.internal/ubuntu eoan/main s390x libpcre2-32-0 s390x 10.32-5 [90.2 kB] Get:122 http://ftpmaster.internal/ubuntu eoan/main s390x libpcre2-posix0 s390x 10.32-5 [5596 B] Get:123 http://ftpmaster.internal/ubuntu eoan/main s390x libpcre2-dev s390x 10.32-5 [454 kB] Get:124 http://ftpmaster.internal/ubuntu eoan/main s390x libpcre16-3 s390x 2:8.39-12 [79.0 kB] Get:125 http://ftpmaster.internal/ubuntu eoan/main s390x libpcre32-3 s390x 2:8.39-12 [73.8 kB] Get:126 http://ftpmaster.internal/ubuntu eoan/main s390x libpcrecpp0v5 s390x 2:8.39-12 [14.6 kB] Get:127 http://ftpmaster.internal/ubuntu eoan/main s390x libpcre3-dev s390x 2:8.39-12 [373 kB] Get:128 http://ftpmaster.internal/ubuntu eoan/main s390x zlib1g-dev s390x 1:1.2.11.dfsg-1ubuntu2 [170 kB] Get:129 http://ftpmaster.internal/ubuntu eoan/main s390x libpng-dev s390x 1.6.37-1 [171 kB] Get:130 http://ftpmaster.internal/ubuntu eoan/main s390x libbz2-dev s390x 1.0.6-9.2 [30.3 kB] Get:131 http://ftpmaster.internal/ubuntu eoan/main s390x liblzma-dev s390x 5.2.4-1 [145 kB] Get:132 http://ftpmaster.internal/ubuntu eoan/main s390x icu-devtools s390x 63.2-2 [169 kB] Get:133 http://ftpmaster.internal/ubuntu eoan/main s390x libicu-dev s390x 63.2-2 [8890 kB] Get:134 http://ftpmaster.internal/ubuntu eoan/main s390x pkg-config s390x 0.29.1-0ubuntu3 [43.7 kB] Get:135 http://ftpmaster.internal/ubuntu eoan-proposed/universe s390x r-base-dev all 3.6.1-2 [4520 B] Get:136 http://ftpmaster.internal/ubuntu eoan/main s390x libfile-which-perl all 1.23-1 [13.8 kB] Get:137 http://ftpmaster.internal/ubuntu eoan/universe s390x libswitch-perl all 2.17-2 [18.8 kB] Get:138 http://ftpmaster.internal/ubuntu eoan/universe s390x dh-r all 20190612 [32.3 kB] Get:139 http://ftpmaster.internal/ubuntu eoan-proposed/universe s390x r-bioc-biocgenerics all 0.30.0-2 [633 kB] Get:140 http://ftpmaster.internal/ubuntu eoan-proposed/universe s390x r-bioc-biobase s390x 2.44.0-1 [2222 kB] Get:141 http://ftpmaster.internal/ubuntu eoan-proposed/universe s390x r-cran-formatr all 1.7-1 [147 kB] Get:142 http://ftpmaster.internal/ubuntu eoan/universe s390x r-cran-lambda.r all 1.2.3-2 [117 kB] Get:143 http://ftpmaster.internal/ubuntu eoan/universe s390x r-cran-futile.options all 1.0.1-2 [19.8 kB] Get:144 http://ftpmaster.internal/ubuntu eoan/universe s390x r-cran-futile.logger all 1.4.3-3 [102 kB] Get:145 http://ftpmaster.internal/ubuntu eoan/universe s390x r-cran-snow all 1:0.4.3-1 [107 kB] Get:146 http://ftpmaster.internal/ubuntu eoan-proposed/universe s390x r-bioc-biocparallel s390x 1.18.0-1 [1056 kB] Get:147 http://ftpmaster.internal/ubuntu eoan-proposed/universe s390x r-bioc-s4vectors s390x 0.22.0-1 [1835 kB] Get:148 http://ftpmaster.internal/ubuntu eoan-proposed/universe s390x r-bioc-iranges s390x 2.18.1-1 [2153 kB] Get:149 http://ftpmaster.internal/ubuntu eoan-proposed/universe s390x r-bioc-zlibbioc all 1.30.0+dfsg-1 [8752 B] Get:150 http://ftpmaster.internal/ubuntu eoan-proposed/universe s390x r-bioc-xvector s390x 0.24.0-1 [602 kB] Get:151 http://ftpmaster.internal/ubuntu eoan-proposed/universe s390x r-bioc-biostrings s390x 2.52.0-1 [14.1 MB] Get:152 http://ftpmaster.internal/ubuntu eoan/universe s390x r-cran-matrixstats s390x 0.54.0-1 [603 kB] Get:153 http://ftpmaster.internal/ubuntu eoan/universe s390x r-cran-lattice s390x 0.20-38-1 [1109 kB] Get:154 http://ftpmaster.internal/ubuntu eoan-proposed/universe s390x r-cran-matrix s390x 1.2-17-1 [3411 kB] Get:155 http://ftpmaster.internal/ubuntu eoan-proposed/universe s390x r-bioc-delayedarray s390x 0.10.0+dfsg-1 [1650 kB] Get:156 http://ftpmaster.internal/ubuntu eoan/universe s390x r-cran-bitops s390x 1.0-6-4 [23.2 kB] Get:157 http://ftpmaster.internal/ubuntu eoan-proposed/universe s390x r-cran-rcurl s390x 1.95-4.12-1 [719 kB] Get:158 http://ftpmaster.internal/ubuntu eoan-proposed/universe s390x r-bioc-genomeinfodbdata all 1.2.1-1 [9801 kB] Get:159 http://ftpmaster.internal/ubuntu eoan-proposed/universe s390x r-bioc-genomeinfodb all 1.20.0-1 [3685 kB] Get:160 http://ftpmaster.internal/ubuntu eoan-proposed/universe s390x r-bioc-genomicranges s390x 1.36.0+dfsg-1 [1767 kB] Get:161 http://ftpmaster.internal/ubuntu eoan-proposed/universe s390x r-bioc-summarizedexperiment all 1.14.0+dfsg-1 [1877 kB] Get:162 http://ftpmaster.internal/ubuntu eoan-proposed/universe s390x r-bioc-rsamtools s390x 2.0.0-1 [3680 kB] Get:163 http://ftpmaster.internal/ubuntu eoan-proposed/universe s390x r-bioc-genomicalignments s390x 1.20.1-1 [2108 kB] Get:164 http://ftpmaster.internal/ubuntu eoan/universe s390x r-cran-hwriter all 1.3.2-3 [158 kB] Get:165 http://ftpmaster.internal/ubuntu eoan/universe s390x r-cran-rcolorbrewer all 1.1-2-2 [54.4 kB] Get:166 http://ftpmaster.internal/ubuntu eoan/universe s390x r-cran-latticeextra s390x 0.6-28-2build2 [2182 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 129 MB in 2s (58.4 MB/s) Selecting previously unselected package libbsd0:s390x. (Reading database ... 13656 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.9.1-2_s390x.deb ... Unpacking libbsd0:s390x (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2ubuntu2_s390x.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package libuchardet0:s390x. Preparing to unpack .../002-libuchardet0_0.0.6-3_s390x.deb ... Unpacking libuchardet0:s390x (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-3_s390x.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:s390x. Preparing to unpack .../004-libpipeline1_1.5.1-2_s390x.deb ... Unpacking libpipeline1:s390x (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.8.5-2_s390x.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../006-libmagic-mgc_1%3a5.37-3_s390x.deb ... Unpacking libmagic-mgc (1:5.37-3) ... Selecting previously unselected package libmagic1:s390x. Preparing to unpack .../007-libmagic1_1%3a5.37-3_s390x.deb ... Unpacking libmagic1:s390x (1:5.37-3) ... Selecting previously unselected package file. Preparing to unpack .../008-file_1%3a5.37-3_s390x.deb ... Unpacking file (1:5.37-3) ... Selecting previously unselected package libelf1:s390x. Preparing to unpack .../009-libelf1_0.176-1.1_s390x.deb ... Unpacking libelf1:s390x (0.176-1.1) ... Selecting previously unselected package libexpat1:s390x. Preparing to unpack .../010-libexpat1_2.2.7-1_s390x.deb ... Unpacking libexpat1:s390x (2.2.7-1) ... Selecting previously unselected package libfribidi0:s390x. Preparing to unpack .../011-libfribidi0_1.0.5-3.1_s390x.deb ... Unpacking libfribidi0:s390x (1.0.5-3.1) ... Selecting previously unselected package libglib2.0-0:s390x. Preparing to unpack .../012-libglib2.0-0_2.61.1-2_s390x.deb ... Unpacking libglib2.0-0:s390x (2.61.1-2) ... Selecting previously unselected package libicu63:s390x. Preparing to unpack .../013-libicu63_63.2-2_s390x.deb ... Unpacking libicu63:s390x (63.2-2) ... Selecting previously unselected package libxml2:s390x. Preparing to unpack .../014-libxml2_2.9.4+dfsg1-7ubuntu3_s390x.deb ... Unpacking libxml2:s390x (2.9.4+dfsg1-7ubuntu3) ... Selecting previously unselected package ucf. Preparing to unpack .../015-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../016-gettext-base_0.19.8.1-9_s390x.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libkrb5support0:s390x. Preparing to unpack .../017-libkrb5support0_1.17-5_s390x.deb ... Unpacking libkrb5support0:s390x (1.17-5) ... Selecting previously unselected package libk5crypto3:s390x. Preparing to unpack .../018-libk5crypto3_1.17-5_s390x.deb ... Unpacking libk5crypto3:s390x (1.17-5) ... Selecting previously unselected package libkeyutils1:s390x. Preparing to unpack .../019-libkeyutils1_1.6-6_s390x.deb ... Unpacking libkeyutils1:s390x (1.6-6) ... Selecting previously unselected package libkrb5-3:s390x. Preparing to unpack .../020-libkrb5-3_1.17-5_s390x.deb ... Unpacking libkrb5-3:s390x (1.17-5) ... Selecting previously unselected package libgssapi-krb5-2:s390x. Preparing to unpack .../021-libgssapi-krb5-2_1.17-5_s390x.deb ... Unpacking libgssapi-krb5-2:s390x (1.17-5) ... Selecting previously unselected package libpsl5:s390x. Preparing to unpack .../022-libpsl5_0.20.2-2_s390x.deb ... Unpacking libpsl5:s390x (0.20.2-2) ... Selecting previously unselected package libxau6:s390x. Preparing to unpack .../023-libxau6_1%3a1.0.8-1_s390x.deb ... Unpacking libxau6:s390x (1:1.0.8-1) ... Selecting previously unselected package libxdmcp6:s390x. Preparing to unpack .../024-libxdmcp6_1%3a1.1.2-3_s390x.deb ... Unpacking libxdmcp6:s390x (1:1.1.2-3) ... Selecting previously unselected package libxcb1:s390x. Preparing to unpack .../025-libxcb1_1.13.1-2_s390x.deb ... Unpacking libxcb1:s390x (1.13.1-2) ... Selecting previously unselected package libx11-data. Preparing to unpack .../026-libx11-data_2%3a1.6.7-1_all.deb ... Unpacking libx11-data (2:1.6.7-1) ... Selecting previously unselected package libx11-6:s390x. Preparing to unpack .../027-libx11-6_2%3a1.6.7-1_s390x.deb ... Unpacking libx11-6:s390x (2:1.6.7-1) ... Selecting previously unselected package libxext6:s390x. Preparing to unpack .../028-libxext6_2%3a1.3.3-1_s390x.deb ... Unpacking libxext6:s390x (2:1.3.3-1) ... Selecting previously unselected package libxmuu1:s390x. Preparing to unpack .../029-libxmuu1_2%3a1.1.2-2_s390x.deb ... Unpacking libxmuu1:s390x (2:1.1.2-2) ... Selecting previously unselected package xauth. Preparing to unpack .../030-xauth_1%3a1.0.10-1_s390x.deb ... Unpacking xauth (1:1.0.10-1) ... Selecting previously unselected package libsigsegv2:s390x. Preparing to unpack .../031-libsigsegv2_2.12-2_s390x.deb ... Unpacking libsigsegv2:s390x (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../032-m4_1.4.18-2_s390x.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../033-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../034-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../035-automake_1%3a1.16.1-4ubuntu3_all.deb ... Unpacking automake (1:1.16.1-4ubuntu3) ... Selecting previously unselected package autopoint. Preparing to unpack .../036-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package dctrl-tools. Preparing to unpack .../037-dctrl-tools_2.24-3_s390x.deb ... Unpacking dctrl-tools (2.24-3) ... Selecting previously unselected package libtool. Preparing to unpack .../038-libtool_2.4.6-10_all.deb ... Unpacking libtool (2.4.6-10) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../039-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../040-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../041-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../042-libfile-stripnondeterminism-perl_1.2.3-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.2.3-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../043-dh-strip-nondeterminism_1.2.3-1_all.deb ... Unpacking dh-strip-nondeterminism (1.2.3-1) ... Selecting previously unselected package dwz. Preparing to unpack .../044-dwz_0.12.20190716-1_s390x.deb ... Unpacking dwz (0.12.20190716-1) ... Selecting previously unselected package libcroco3:s390x. Preparing to unpack .../045-libcroco3_0.6.12-3_s390x.deb ... Unpacking libcroco3:s390x (0.6.12-3) ... Selecting previously unselected package gettext. Preparing to unpack .../046-gettext_0.19.8.1-9_s390x.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../047-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../048-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../049-debhelper_12.2.3ubuntu1_all.deb ... Unpacking debhelper (12.2.3ubuntu1) ... Selecting previously unselected package zip. Preparing to unpack .../050-zip_3.0-11build1_s390x.deb ... Unpacking zip (3.0-11build1) ... Selecting previously unselected package unzip. Preparing to unpack .../051-unzip_6.0-24ubuntu1_s390x.deb ... Unpacking unzip (6.0-24ubuntu1) ... Selecting previously unselected package libpaper1:s390x. Preparing to unpack .../052-libpaper1_1.1.28_s390x.deb ... Unpacking libpaper1:s390x (1.1.28) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../053-libpaper-utils_1.1.28_s390x.deb ... Unpacking libpaper-utils (1.1.28) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../054-xdg-utils_1.1.3-1ubuntu2_all.deb ... Unpacking xdg-utils (1.1.3-1ubuntu2) ... Selecting previously unselected package libblas3:s390x. Preparing to unpack .../055-libblas3_3.8.0-2_s390x.deb ... Unpacking libblas3:s390x (3.8.0-2) ... Selecting previously unselected package libfreetype6:s390x. Preparing to unpack .../056-libfreetype6_2.9.1-3_s390x.deb ... Unpacking libfreetype6:s390x (2.9.1-3) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../057-fonts-dejavu-core_2.37-1_all.deb ... Unpacking fonts-dejavu-core (2.37-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../058-fontconfig-config_2.13.1-2ubuntu2_all.deb ... Unpacking fontconfig-config (2.13.1-2ubuntu2) ... Selecting previously unselected package libfontconfig1:s390x. Preparing to unpack .../059-libfontconfig1_2.13.1-2ubuntu2_s390x.deb ... Unpacking libfontconfig1:s390x (2.13.1-2ubuntu2) ... Selecting previously unselected package libpixman-1-0:s390x. Preparing to unpack .../060-libpixman-1-0_0.36.0-1_s390x.deb ... Unpacking libpixman-1-0:s390x (0.36.0-1) ... Selecting previously unselected package libxcb-render0:s390x. Preparing to unpack .../061-libxcb-render0_1.13.1-2_s390x.deb ... Unpacking libxcb-render0:s390x (1.13.1-2) ... Selecting previously unselected package libxcb-shm0:s390x. Preparing to unpack .../062-libxcb-shm0_1.13.1-2_s390x.deb ... Unpacking libxcb-shm0:s390x (1.13.1-2) ... Selecting previously unselected package libxrender1:s390x. Preparing to unpack .../063-libxrender1_1%3a0.9.10-1_s390x.deb ... Unpacking libxrender1:s390x (1:0.9.10-1) ... Selecting previously unselected package libcairo2:s390x. Preparing to unpack .../064-libcairo2_1.16.0-4_s390x.deb ... Unpacking libcairo2:s390x (1.16.0-4) ... Selecting previously unselected package libroken18-heimdal:s390x. Preparing to unpack .../065-libroken18-heimdal_7.5.0+dfsg-3_s390x.deb ... Unpacking libroken18-heimdal:s390x (7.5.0+dfsg-3) ... Selecting previously unselected package libasn1-8-heimdal:s390x. Preparing to unpack .../066-libasn1-8-heimdal_7.5.0+dfsg-3_s390x.deb ... Unpacking libasn1-8-heimdal:s390x (7.5.0+dfsg-3) ... Selecting previously unselected package libheimbase1-heimdal:s390x. Preparing to unpack .../067-libheimbase1-heimdal_7.5.0+dfsg-3_s390x.deb ... Unpacking libheimbase1-heimdal:s390x (7.5.0+dfsg-3) ... Selecting previously unselected package libhcrypto4-heimdal:s390x. Preparing to unpack .../068-libhcrypto4-heimdal_7.5.0+dfsg-3_s390x.deb ... Unpacking libhcrypto4-heimdal:s390x (7.5.0+dfsg-3) ... Selecting previously unselected package libwind0-heimdal:s390x. Preparing to unpack .../069-libwind0-heimdal_7.5.0+dfsg-3_s390x.deb ... Unpacking libwind0-heimdal:s390x (7.5.0+dfsg-3) ... Selecting previously unselected package libhx509-5-heimdal:s390x. Preparing to unpack .../070-libhx509-5-heimdal_7.5.0+dfsg-3_s390x.deb ... Unpacking libhx509-5-heimdal:s390x (7.5.0+dfsg-3) ... Selecting previously unselected package libkrb5-26-heimdal:s390x. Preparing to unpack .../071-libkrb5-26-heimdal_7.5.0+dfsg-3_s390x.deb ... Unpacking libkrb5-26-heimdal:s390x (7.5.0+dfsg-3) ... Selecting previously unselected package libheimntlm0-heimdal:s390x. Preparing to unpack .../072-libheimntlm0-heimdal_7.5.0+dfsg-3_s390x.deb ... Unpacking libheimntlm0-heimdal:s390x (7.5.0+dfsg-3) ... Selecting previously unselected package libgssapi3-heimdal:s390x. Preparing to unpack .../073-libgssapi3-heimdal_7.5.0+dfsg-3_s390x.deb ... Unpacking libgssapi3-heimdal:s390x (7.5.0+dfsg-3) ... Selecting previously unselected package libsasl2-modules-db:s390x. Preparing to unpack .../074-libsasl2-modules-db_2.1.27+dfsg-1_s390x.deb ... Unpacking libsasl2-modules-db:s390x (2.1.27+dfsg-1) ... Selecting previously unselected package libsasl2-2:s390x. Preparing to unpack .../075-libsasl2-2_2.1.27+dfsg-1_s390x.deb ... Unpacking libsasl2-2:s390x (2.1.27+dfsg-1) ... Selecting previously unselected package libldap-common. Preparing to unpack .../076-libldap-common_2.4.47+dfsg-3ubuntu2_all.deb ... Unpacking libldap-common (2.4.47+dfsg-3ubuntu2) ... Selecting previously unselected package libldap-2.4-2:s390x. Preparing to unpack .../077-libldap-2.4-2_2.4.47+dfsg-3ubuntu2_s390x.deb ... Unpacking libldap-2.4-2:s390x (2.4.47+dfsg-3ubuntu2) ... Selecting previously unselected package libnghttp2-14:s390x. Preparing to unpack .../078-libnghttp2-14_1.37.0-1_s390x.deb ... Unpacking libnghttp2-14:s390x (1.37.0-1) ... Selecting previously unselected package librtmp1:s390x. Preparing to unpack .../079-librtmp1_2.4+20151223.gitfa8646d.1-2_s390x.deb ... Unpacking librtmp1:s390x (2.4+20151223.gitfa8646d.1-2) ... Selecting previously unselected package libssh-4:s390x. Preparing to unpack .../080-libssh-4_0.9.0-1_s390x.deb ... Unpacking libssh-4:s390x (0.9.0-1) ... Selecting previously unselected package libcurl4:s390x. Preparing to unpack .../081-libcurl4_7.65.1-1ubuntu1_s390x.deb ... Unpacking libcurl4:s390x (7.65.1-1ubuntu1) ... Selecting previously unselected package libjpeg-turbo8:s390x. Preparing to unpack .../082-libjpeg-turbo8_2.0.1-0ubuntu2_s390x.deb ... Unpacking libjpeg-turbo8:s390x (2.0.1-0ubuntu2) ... Selecting previously unselected package libjpeg8:s390x. Preparing to unpack .../083-libjpeg8_8c-2ubuntu8_s390x.deb ... Unpacking libjpeg8:s390x (8c-2ubuntu8) ... Selecting previously unselected package libgfortran5:s390x. Preparing to unpack .../084-libgfortran5_9.1.0-9ubuntu2_s390x.deb ... Unpacking libgfortran5:s390x (9.1.0-9ubuntu2) ... Selecting previously unselected package liblapack3:s390x. Preparing to unpack .../085-liblapack3_3.8.0-2_s390x.deb ... Unpacking liblapack3:s390x (3.8.0-2) ... Selecting previously unselected package fontconfig. Preparing to unpack .../086-fontconfig_2.13.1-2ubuntu2_s390x.deb ... Unpacking fontconfig (2.13.1-2ubuntu2) ... Selecting previously unselected package libthai-data. Preparing to unpack .../087-libthai-data_0.1.28-2_all.deb ... Unpacking libthai-data (0.1.28-2) ... Selecting previously unselected package libdatrie1:s390x. Preparing to unpack .../088-libdatrie1_0.2.12-2_s390x.deb ... Unpacking libdatrie1:s390x (0.2.12-2) ... Selecting previously unselected package libthai0:s390x. Preparing to unpack .../089-libthai0_0.1.28-2_s390x.deb ... Unpacking libthai0:s390x (0.1.28-2) ... Selecting previously unselected package libpango-1.0-0:s390x. Preparing to unpack .../090-libpango-1.0-0_1.42.4-6_s390x.deb ... Unpacking libpango-1.0-0:s390x (1.42.4-6) ... Selecting previously unselected package libgraphite2-3:s390x. Preparing to unpack .../091-libgraphite2-3_1.3.13-7_s390x.deb ... Unpacking libgraphite2-3:s390x (1.3.13-7) ... Selecting previously unselected package libharfbuzz0b:s390x. Preparing to unpack .../092-libharfbuzz0b_2.5.3-1_s390x.deb ... Unpacking libharfbuzz0b:s390x (2.5.3-1) ... Selecting previously unselected package libpangoft2-1.0-0:s390x. Preparing to unpack .../093-libpangoft2-1.0-0_1.42.4-6_s390x.deb ... Unpacking libpangoft2-1.0-0:s390x (1.42.4-6) ... Selecting previously unselected package libpangocairo-1.0-0:s390x. Preparing to unpack .../094-libpangocairo-1.0-0_1.42.4-6_s390x.deb ... Unpacking libpangocairo-1.0-0:s390x (1.42.4-6) ... Selecting previously unselected package libtcl8.6:s390x. Preparing to unpack .../095-libtcl8.6_8.6.9+dfsg-2_s390x.deb ... Unpacking libtcl8.6:s390x (8.6.9+dfsg-2) ... Selecting previously unselected package libjbig0:s390x. Preparing to unpack .../096-libjbig0_2.1-3.1build1_s390x.deb ... Unpacking libjbig0:s390x (2.1-3.1build1) ... Selecting previously unselected package libwebp6:s390x. Preparing to unpack .../097-libwebp6_0.6.1-2_s390x.deb ... Unpacking libwebp6:s390x (0.6.1-2) ... Selecting previously unselected package libtiff5:s390x. Preparing to unpack .../098-libtiff5_4.0.10-4_s390x.deb ... Unpacking libtiff5:s390x (4.0.10-4) ... Selecting previously unselected package libxft2:s390x. Preparing to unpack .../099-libxft2_2.3.2-2_s390x.deb ... Unpacking libxft2:s390x (2.3.2-2) ... Selecting previously unselected package x11-common. Preparing to unpack .../100-x11-common_1%3a7.7+19ubuntu12_all.deb ... dpkg-query: no packages found matching nux-tools Unpacking x11-common (1:7.7+19ubuntu12) ... Selecting previously unselected package libxss1:s390x. Preparing to unpack .../101-libxss1_1%3a1.2.3-1_s390x.deb ... Unpacking libxss1:s390x (1:1.2.3-1) ... Selecting previously unselected package libtk8.6:s390x. Preparing to unpack .../102-libtk8.6_8.6.9-2_s390x.deb ... Unpacking libtk8.6:s390x (8.6.9-2) ... Selecting previously unselected package libice6:s390x. Preparing to unpack .../103-libice6_2%3a1.0.9-2_s390x.deb ... Unpacking libice6:s390x (2:1.0.9-2) ... Selecting previously unselected package libsm6:s390x. Preparing to unpack .../104-libsm6_2%3a1.2.3-1_s390x.deb ... Unpacking libsm6:s390x (2:1.2.3-1) ... Selecting previously unselected package libxt6:s390x. Preparing to unpack .../105-libxt6_1%3a1.1.5-1_s390x.deb ... Unpacking libxt6:s390x (1:1.1.5-1) ... Selecting previously unselected package r-base-core. Preparing to unpack .../106-r-base-core_3.6.1-2_s390x.deb ... Unpacking r-base-core (3.6.1-2) ... Selecting previously unselected package libgfortran-9-dev:s390x. Preparing to unpack .../107-libgfortran-9-dev_9.1.0-9ubuntu2_s390x.deb ... Unpacking libgfortran-9-dev:s390x (9.1.0-9ubuntu2) ... Selecting previously unselected package gfortran-9. Preparing to unpack .../108-gfortran-9_9.1.0-9ubuntu2_s390x.deb ... Unpacking gfortran-9 (9.1.0-9ubuntu2) ... Selecting previously unselected package gfortran. Preparing to unpack .../109-gfortran_4%3a9.1.0-1ubuntu4_s390x.deb ... Unpacking gfortran (4:9.1.0-1ubuntu4) ... Selecting previously unselected package libblas-dev:s390x. Preparing to unpack .../110-libblas-dev_3.8.0-2_s390x.deb ... Unpacking libblas-dev:s390x (3.8.0-2) ... Selecting previously unselected package liblapack-dev:s390x. Preparing to unpack .../111-liblapack-dev_3.8.0-2_s390x.deb ... Unpacking liblapack-dev:s390x (3.8.0-2) ... Selecting previously unselected package libncurses-dev:s390x. Preparing to unpack .../112-libncurses-dev_6.1+20190713-1ubuntu1_s390x.deb ... Unpacking libncurses-dev:s390x (6.1+20190713-1ubuntu1) ... Selecting previously unselected package libncurses5-dev:s390x. Preparing to unpack .../113-libncurses5-dev_6.1+20190713-1ubuntu1_s390x.deb ... Unpacking libncurses5-dev:s390x (6.1+20190713-1ubuntu1) ... Selecting previously unselected package libreadline-dev:s390x. Preparing to unpack .../114-libreadline-dev_8.0-2_s390x.deb ... Unpacking libreadline-dev:s390x (8.0-2) ... Selecting previously unselected package libjpeg-turbo8-dev:s390x. Preparing to unpack .../115-libjpeg-turbo8-dev_2.0.1-0ubuntu2_s390x.deb ... Unpacking libjpeg-turbo8-dev:s390x (2.0.1-0ubuntu2) ... Selecting previously unselected package libjpeg8-dev:s390x. Preparing to unpack .../116-libjpeg8-dev_8c-2ubuntu8_s390x.deb ... Unpacking libjpeg8-dev:s390x (8c-2ubuntu8) ... Selecting previously unselected package libjpeg-dev:s390x. Preparing to unpack .../117-libjpeg-dev_8c-2ubuntu8_s390x.deb ... Unpacking libjpeg-dev:s390x (8c-2ubuntu8) ... Selecting previously unselected package libpcre2-16-0:s390x. Preparing to unpack .../118-libpcre2-16-0_10.32-5_s390x.deb ... Unpacking libpcre2-16-0:s390x (10.32-5) ... Selecting previously unselected package libpcre2-32-0:s390x. Preparing to unpack .../119-libpcre2-32-0_10.32-5_s390x.deb ... Unpacking libpcre2-32-0:s390x (10.32-5) ... Selecting previously unselected package libpcre2-posix0:s390x. Preparing to unpack .../120-libpcre2-posix0_10.32-5_s390x.deb ... Unpacking libpcre2-posix0:s390x (10.32-5) ... Selecting previously unselected package libpcre2-dev:s390x. Preparing to unpack .../121-libpcre2-dev_10.32-5_s390x.deb ... Unpacking libpcre2-dev:s390x (10.32-5) ... Selecting previously unselected package libpcre16-3:s390x. Preparing to unpack .../122-libpcre16-3_2%3a8.39-12_s390x.deb ... Unpacking libpcre16-3:s390x (2:8.39-12) ... Selecting previously unselected package libpcre32-3:s390x. Preparing to unpack .../123-libpcre32-3_2%3a8.39-12_s390x.deb ... Unpacking libpcre32-3:s390x (2:8.39-12) ... Selecting previously unselected package libpcrecpp0v5:s390x. Preparing to unpack .../124-libpcrecpp0v5_2%3a8.39-12_s390x.deb ... Unpacking libpcrecpp0v5:s390x (2:8.39-12) ... Selecting previously unselected package libpcre3-dev:s390x. Preparing to unpack .../125-libpcre3-dev_2%3a8.39-12_s390x.deb ... Unpacking libpcre3-dev:s390x (2:8.39-12) ... Selecting previously unselected package zlib1g-dev:s390x. Preparing to unpack .../126-zlib1g-dev_1%3a1.2.11.dfsg-1ubuntu2_s390x.deb ... Unpacking zlib1g-dev:s390x (1:1.2.11.dfsg-1ubuntu2) ... Selecting previously unselected package libpng-dev:s390x. Preparing to unpack .../127-libpng-dev_1.6.37-1_s390x.deb ... Unpacking libpng-dev:s390x (1.6.37-1) ... Selecting previously unselected package libbz2-dev:s390x. Preparing to unpack .../128-libbz2-dev_1.0.6-9.2_s390x.deb ... Unpacking libbz2-dev:s390x (1.0.6-9.2) ... Selecting previously unselected package liblzma-dev:s390x. Preparing to unpack .../129-liblzma-dev_5.2.4-1_s390x.deb ... Unpacking liblzma-dev:s390x (5.2.4-1) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../130-icu-devtools_63.2-2_s390x.deb ... Unpacking icu-devtools (63.2-2) ... Selecting previously unselected package libicu-dev:s390x. Preparing to unpack .../131-libicu-dev_63.2-2_s390x.deb ... Unpacking libicu-dev:s390x (63.2-2) ... Selecting previously unselected package pkg-config. Preparing to unpack .../132-pkg-config_0.29.1-0ubuntu3_s390x.deb ... Unpacking pkg-config (0.29.1-0ubuntu3) ... Selecting previously unselected package r-base-dev. Preparing to unpack .../133-r-base-dev_3.6.1-2_all.deb ... Unpacking r-base-dev (3.6.1-2) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../134-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libswitch-perl. Preparing to unpack .../135-libswitch-perl_2.17-2_all.deb ... Unpacking libswitch-perl (2.17-2) ... Selecting previously unselected package dh-r. Preparing to unpack .../136-dh-r_20190612_all.deb ... Unpacking dh-r (20190612) ... Selecting previously unselected package r-bioc-biocgenerics. Preparing to unpack .../137-r-bioc-biocgenerics_0.30.0-2_all.deb ... Unpacking r-bioc-biocgenerics (0.30.0-2) ... Selecting previously unselected package r-bioc-biobase. Preparing to unpack .../138-r-bioc-biobase_2.44.0-1_s390x.deb ... Unpacking r-bioc-biobase (2.44.0-1) ... Selecting previously unselected package r-cran-formatr. Preparing to unpack .../139-r-cran-formatr_1.7-1_all.deb ... Unpacking r-cran-formatr (1.7-1) ... Selecting previously unselected package r-cran-lambda.r. Preparing to unpack .../140-r-cran-lambda.r_1.2.3-2_all.deb ... Unpacking r-cran-lambda.r (1.2.3-2) ... Selecting previously unselected package r-cran-futile.options. Preparing to unpack .../141-r-cran-futile.options_1.0.1-2_all.deb ... Unpacking r-cran-futile.options (1.0.1-2) ... Selecting previously unselected package r-cran-futile.logger. Preparing to unpack .../142-r-cran-futile.logger_1.4.3-3_all.deb ... Unpacking r-cran-futile.logger (1.4.3-3) ... Selecting previously unselected package r-cran-snow. Preparing to unpack .../143-r-cran-snow_1%3a0.4.3-1_all.deb ... Unpacking r-cran-snow (1:0.4.3-1) ... Selecting previously unselected package r-bioc-biocparallel. Preparing to unpack .../144-r-bioc-biocparallel_1.18.0-1_s390x.deb ... Unpacking r-bioc-biocparallel (1.18.0-1) ... Selecting previously unselected package r-bioc-s4vectors. Preparing to unpack .../145-r-bioc-s4vectors_0.22.0-1_s390x.deb ... Unpacking r-bioc-s4vectors (0.22.0-1) ... Selecting previously unselected package r-bioc-iranges. Preparing to unpack .../146-r-bioc-iranges_2.18.1-1_s390x.deb ... Unpacking r-bioc-iranges (2.18.1-1) ... Selecting previously unselected package r-bioc-zlibbioc. Preparing to unpack .../147-r-bioc-zlibbioc_1.30.0+dfsg-1_all.deb ... Unpacking r-bioc-zlibbioc (1.30.0+dfsg-1) ... Selecting previously unselected package r-bioc-xvector. Preparing to unpack .../148-r-bioc-xvector_0.24.0-1_s390x.deb ... Unpacking r-bioc-xvector (0.24.0-1) ... Selecting previously unselected package r-bioc-biostrings. Preparing to unpack .../149-r-bioc-biostrings_2.52.0-1_s390x.deb ... Unpacking r-bioc-biostrings (2.52.0-1) ... Selecting previously unselected package r-cran-matrixstats. Preparing to unpack .../150-r-cran-matrixstats_0.54.0-1_s390x.deb ... Unpacking r-cran-matrixstats (0.54.0-1) ... Selecting previously unselected package r-cran-lattice. Preparing to unpack .../151-r-cran-lattice_0.20-38-1_s390x.deb ... Unpacking r-cran-lattice (0.20-38-1) ... Selecting previously unselected package r-cran-matrix. Preparing to unpack .../152-r-cran-matrix_1.2-17-1_s390x.deb ... Unpacking r-cran-matrix (1.2-17-1) ... Selecting previously unselected package r-bioc-delayedarray. Preparing to unpack .../153-r-bioc-delayedarray_0.10.0+dfsg-1_s390x.deb ... Unpacking r-bioc-delayedarray (0.10.0+dfsg-1) ... Selecting previously unselected package r-cran-bitops. Preparing to unpack .../154-r-cran-bitops_1.0-6-4_s390x.deb ... Unpacking r-cran-bitops (1.0-6-4) ... Selecting previously unselected package r-cran-rcurl. Preparing to unpack .../155-r-cran-rcurl_1.95-4.12-1_s390x.deb ... Unpacking r-cran-rcurl (1.95-4.12-1) ... Selecting previously unselected package r-bioc-genomeinfodbdata. Preparing to unpack .../156-r-bioc-genomeinfodbdata_1.2.1-1_all.deb ... Unpacking r-bioc-genomeinfodbdata (1.2.1-1) ... Selecting previously unselected package r-bioc-genomeinfodb. Preparing to unpack .../157-r-bioc-genomeinfodb_1.20.0-1_all.deb ... Unpacking r-bioc-genomeinfodb (1.20.0-1) ... Selecting previously unselected package r-bioc-genomicranges. Preparing to unpack .../158-r-bioc-genomicranges_1.36.0+dfsg-1_s390x.deb ... Unpacking r-bioc-genomicranges (1.36.0+dfsg-1) ... Selecting previously unselected package r-bioc-summarizedexperiment. Preparing to unpack .../159-r-bioc-summarizedexperiment_1.14.0+dfsg-1_all.deb ... Unpacking r-bioc-summarizedexperiment (1.14.0+dfsg-1) ... Selecting previously unselected package r-bioc-rsamtools. Preparing to unpack .../160-r-bioc-rsamtools_2.0.0-1_s390x.deb ... Unpacking r-bioc-rsamtools (2.0.0-1) ... Selecting previously unselected package r-bioc-genomicalignments. Preparing to unpack .../161-r-bioc-genomicalignments_1.20.1-1_s390x.deb ... Unpacking r-bioc-genomicalignments (1.20.1-1) ... Selecting previously unselected package r-cran-hwriter. Preparing to unpack .../162-r-cran-hwriter_1.3.2-3_all.deb ... Unpacking r-cran-hwriter (1.3.2-3) ... Selecting previously unselected package r-cran-rcolorbrewer. Preparing to unpack .../163-r-cran-rcolorbrewer_1.1-2-2_all.deb ... Unpacking r-cran-rcolorbrewer (1.1-2-2) ... Selecting previously unselected package r-cran-latticeextra. Preparing to unpack .../164-r-cran-latticeextra_0.6-28-2build2_s390x.deb ... Unpacking r-cran-latticeextra (0.6-28-2build2) ... Selecting previously unselected package sbuild-build-depends-r-bioc-shortread-dummy. Preparing to unpack .../165-sbuild-build-depends-r-bioc-shortread-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-r-bioc-shortread-dummy (0.invalid.0) ... Setting up libexpat1:s390x (2.2.7-1) ... Setting up libpcrecpp0v5:s390x (2:8.39-12) ... Setting up libpipeline1:s390x (1.5.1-2) ... Setting up libgraphite2-3:s390x (1.3.13-7) ... Setting up libpixman-1-0:s390x (0.36.0-1) ... Setting up libfile-which-perl (1.23-1) ... Setting up libxau6:s390x (1:1.0.8-1) ... Setting up libkeyutils1:s390x (1.6-6) ... Setting up libncurses-dev:s390x (6.1+20190713-1ubuntu1) ... Setting up libpsl5:s390x (0.20.2-2) ... Setting up libpcre16-3:s390x (2:8.39-12) ... Setting up libdatrie1:s390x (0.2.12-2) ... Setting up libmagic-mgc (1:5.37-3) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:s390x (2.61.1-2) ... No schema files found: doing nothing. Setting up unzip (6.0-24ubuntu1) ... Setting up x11-common (1:7.7+19ubuntu12) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libnghttp2-14:s390x (1.37.0-1) ... Setting up libmagic1:s390x (1:5.37-3) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.37-3) ... Setting up libreadline-dev:s390x (8.0-2) ... Setting up libldap-common (2.4.47+dfsg-3ubuntu2) ... Setting up libjbig0:s390x (2.1-3.1build1) ... Setting up libpcre2-16-0:s390x (10.32-5) ... Setting up libicu63:s390x (63.2-2) ... Setting up libkrb5support0:s390x (1.17-5) ... Setting up libsasl2-modules-db:s390x (2.1.27+dfsg-1) ... Setting up zip (3.0-11build1) ... Setting up autotools-dev (20180224.1) ... Setting up libpcre2-32-0:s390x (10.32-5) ... Setting up libblas3:s390x (3.8.0-2) ... update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode Setting up libpcre2-posix0:s390x (10.32-5) ... Setting up libswitch-perl (2.17-2) ... Setting up libfreetype6:s390x (2.9.1-3) ... Setting up libx11-data (2:1.6.7-1) ... Setting up librtmp1:s390x (2.4+20151223.gitfa8646d.1-2) ... Setting up libsigsegv2:s390x (2.12-2) ... Setting up libfribidi0:s390x (1.0.5-3.1) ... Setting up libpcre32-3:s390x (2:8.39-12) ... Setting up libtcl8.6:s390x (8.6.9+dfsg-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libwebp6:s390x (0.6.1-2) ... Setting up icu-devtools (63.2-2) ... Setting up pkg-config (0.29.1-0ubuntu3) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up ucf (3.0038+nmu1) ... Setting up libk5crypto3:s390x (1.17-5) ... Setting up libjpeg-turbo8:s390x (2.0.1-0ubuntu2) ... Setting up libsasl2-2:s390x (2.1.27+dfsg-1) ... Setting up libgfortran5:s390x (9.1.0-9ubuntu2) ... Setting up libroken18-heimdal:s390x (7.5.0+dfsg-3) ... Setting up liblzma-dev:s390x (5.2.4-1) ... Setting up zlib1g-dev:s390x (1:1.2.11.dfsg-1ubuntu2) ... Setting up libuchardet0:s390x (0.0.6-3) ... Setting up libncurses5-dev:s390x (6.1+20190713-1ubuntu1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libharfbuzz0b:s390x (2.5.3-1) ... Setting up libthai-data (0.1.28-2) ... Setting up libkrb5-3:s390x (1.17-5) ... Setting up libbsd0:s390x (0.9.1-2) ... Setting up libelf1:s390x (0.176-1.1) ... Setting up libicu-dev:s390x (63.2-2) ... Setting up libxml2:s390x (2.9.4+dfsg1-7ubuntu3) ... Setting up xdg-utils (1.1.3-1ubuntu2) ... Setting up libblas-dev:s390x (3.8.0-2) ... update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode Setting up dctrl-tools (2.24-3) ... Setting up libheimbase1-heimdal:s390x (7.5.0+dfsg-3) ... Setting up libbz2-dev:s390x (1.0.6-9.2) ... Setting up libjpeg8:s390x (8c-2ubuntu8) ... Setting up libfile-stripnondeterminism-perl (1.2.3-1) ... Setting up libpaper1:s390x (1.1.28) ... Creating config file /etc/papersize with new version Setting up libice6:s390x (2:1.0.9-2) ... Setting up libjpeg-turbo8-dev:s390x (2.0.1-0ubuntu2) ... Setting up libxdmcp6:s390x (1:1.1.2-3) ... Setting up liblapack3:s390x (3.8.0-2) ... update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode Setting up libxcb1:s390x (1.13.1-2) ... Setting up libpcre2-dev:s390x (10.32-5) ... Setting up libtool (2.4.6-10) ... Setting up libxcb-render0:s390x (1.13.1-2) ... Setting up libpcre3-dev:s390x (2:8.39-12) ... Setting up fontconfig-config (2.13.1-2ubuntu2) ... Setting up libasn1-8-heimdal:s390x (7.5.0+dfsg-3) ... Setting up libpng-dev:s390x (1.6.37-1) ... Setting up libgfortran-9-dev:s390x (9.1.0-9ubuntu2) ... Setting up m4 (1.4.18-2) ... Setting up libxcb-shm0:s390x (1.13.1-2) ... Setting up libpaper-utils (1.1.28) ... Setting up libhcrypto4-heimdal:s390x (7.5.0+dfsg-3) ... Setting up libthai0:s390x (0.1.28-2) ... Setting up libwind0-heimdal:s390x (7.5.0+dfsg-3) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up liblapack-dev:s390x (3.8.0-2) ... update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode Setting up libgssapi-krb5-2:s390x (1.17-5) ... Setting up libcroco3:s390x (0.6.12-3) ... Setting up libssh-4:s390x (0.9.0-1) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12.20190716-1) ... Setting up groff-base (1.22.4-3) ... Setting up libx11-6:s390x (2:1.6.7-1) ... Setting up libtiff5:s390x (4.0.10-4) ... Setting up libfontconfig1:s390x (2.13.1-2ubuntu2) ... Setting up libjpeg8-dev:s390x (8c-2ubuntu8) ... Setting up libsm6:s390x (2:1.2.3-1) ... Setting up libxmuu1:s390x (2:1.1.2-2) ... Setting up automake (1:1.16.1-4ubuntu3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up fontconfig (2.13.1-2ubuntu2) ... Regenerating fonts cache... done. Setting up gettext (0.19.8.1-9) ... Setting up libxrender1:s390x (1:0.9.10-1) ... Setting up gfortran-9 (9.1.0-9ubuntu2) ... Setting up libhx509-5-heimdal:s390x (7.5.0+dfsg-3) ... Setting up libpango-1.0-0:s390x (1.42.4-6) ... Setting up libjpeg-dev:s390x (8c-2ubuntu8) ... Setting up libxext6:s390x (2:1.3.3-1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up gfortran (4:9.1.0-1ubuntu4) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:s390x (1.16.0-4) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxt6:s390x (1:1.1.5-1) ... Setting up xauth (1:1.0.10-1) ... Setting up libxss1:s390x (1:1.2.3-1) ... Setting up libpangoft2-1.0-0:s390x (1.42.4-6) ... Setting up libpangocairo-1.0-0:s390x (1.42.4-6) ... Setting up libkrb5-26-heimdal:s390x (7.5.0+dfsg-3) ... Setting up libxft2:s390x (2.3.2-2) ... Setting up po-debconf (1.0.21) ... Setting up libtk8.6:s390x (8.6.9-2) ... Setting up libheimntlm0-heimdal:s390x (7.5.0+dfsg-3) ... Setting up libgssapi3-heimdal:s390x (7.5.0+dfsg-3) ... Setting up libldap-2.4-2:s390x (2.4.47+dfsg-3ubuntu2) ... Setting up libcurl4:s390x (7.65.1-1ubuntu1) ... Setting up r-base-core (3.6.1-2) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-futile.options (1.0.1-2) ... Setting up r-cran-lattice (0.20-38-1) ... Setting up r-cran-formatr (1.7-1) ... Setting up r-bioc-genomeinfodbdata (1.2.1-1) ... Setting up r-bioc-biocgenerics (0.30.0-2) ... Setting up r-cran-matrixstats (0.54.0-1) ... Setting up r-base-dev (3.6.1-2) ... Setting up r-cran-lambda.r (1.2.3-2) ... Setting up r-cran-snow (1:0.4.3-1) ... Setting up r-cran-bitops (1.0-6-4) ... Setting up r-bioc-zlibbioc (1.30.0+dfsg-1) ... Setting up r-bioc-biobase (2.44.0-1) ... Setting up r-cran-hwriter (1.3.2-3) ... Setting up r-cran-rcolorbrewer (1.1-2-2) ... Setting up r-bioc-s4vectors (0.22.0-1) ... Setting up r-cran-futile.logger (1.4.3-3) ... Setting up r-cran-matrix (1.2-17-1) ... Setting up r-bioc-iranges (2.18.1-1) ... Setting up r-cran-rcurl (1.95-4.12-1) ... Setting up r-bioc-biocparallel (1.18.0-1) ... Setting up r-cran-latticeextra (0.6-28-2build2) ... Setting up r-bioc-genomeinfodb (1.20.0-1) ... Setting up r-bioc-xvector (0.24.0-1) ... Setting up r-bioc-delayedarray (0.10.0+dfsg-1) ... Setting up r-bioc-genomicranges (1.36.0+dfsg-1) ... Setting up r-bioc-biostrings (2.52.0-1) ... Setting up r-bioc-rsamtools (2.0.0-1) ... Setting up r-bioc-summarizedexperiment (1.14.0+dfsg-1) ... Setting up r-bioc-genomicalignments (1.20.1-1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.2.3-1) ... Setting up debhelper (12.2.3ubuntu1) ... Setting up dh-r (20190612) ... Setting up sbuild-build-depends-r-bioc-shortread-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.29-0ubuntu3) ... Processing triggers for systemd (240-6ubuntu9) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-155-generic s390x (s390x) Toolchain package versions: binutils_2.32.51.20190702-1ubuntu1 dpkg-dev_1.19.7ubuntu1 g++-8_8.3.0-19ubuntu1 g++-9_9.1.0-9ubuntu2 gcc-8_8.3.0-19ubuntu1 gcc-9_9.1.0-9ubuntu2 libc6-dev_2.29-0ubuntu3 libstdc++-8-dev_8.3.0-19ubuntu1 libstdc++-9-dev_9.1.0-9ubuntu2 libstdc++6_9.1.0-9ubuntu2 linux-libc-dev_5.2.0-8.9 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1 apt_1.9.1 autoconf_2.69-11 automake_1:1.16.1-4ubuntu3 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.2ubuntu4 base-passwd_3.5.46 bash_5.0-4ubuntu1 binutils_2.32.51.20190702-1ubuntu1 binutils-common_2.32.51.20190702-1ubuntu1 binutils-s390x-linux-gnu_2.32.51.20190702-1ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.33.1-0.1ubuntu2 build-essential_12.6ubuntu1 bzip2_1.0.6-9.2 ca-certificates_20190110 coreutils_8.30-3ubuntu1 cpp_4:9.1.0-1ubuntu4 cpp-8_8.3.0-19ubuntu1 cpp-9_9.1.0-9ubuntu2 dash_0.5.10.2-6 dctrl-tools_2.24-3 debconf_1.5.72 debhelper_12.2.3ubuntu1 debianutils_4.8.6.3 dh-autoreconf_19 dh-r_20190612 dh-strip-nondeterminism_1.2.3-1 diffutils_1:3.7-3 dmsetup_2:1.02.155-2ubuntu4 dpkg_1.19.7ubuntu1 dpkg-dev_1.19.7ubuntu1 dwz_0.12.20190716-1 e2fslibs_1.45.2-1ubuntu1 e2fsprogs_1.45.2-1ubuntu1 fakeroot_1.23-1 fdisk_2.33.1-0.1ubuntu2 file_1:5.37-3 findutils_4.6.0+git+20190209-2ubuntu1 fontconfig_2.13.1-2ubuntu2 fontconfig-config_2.13.1-2ubuntu2 fonts-dejavu-core_2.37-1 g++_4:9.1.0-1ubuntu4 g++-8_8.3.0-19ubuntu1 g++-9_9.1.0-9ubuntu2 gcc_4:9.1.0-1ubuntu4 gcc-8_8.3.0-19ubuntu1 gcc-8-base_8.3.0-19ubuntu1 gcc-9_9.1.0-9ubuntu2 gcc-9-base_9.1.0-9ubuntu2 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gfortran_4:9.1.0-1ubuntu4 gfortran-9_9.1.0-9ubuntu2 gpg_2.2.12-1ubuntu3 gpg-agent_2.2.12-1ubuntu3 gpgconf_2.2.12-1ubuntu3 gpgv_2.2.12-1ubuntu3 grep_3.3-1 groff-base_1.22.4-3 gzip_1.10-0ubuntu1 hostname_3.21 icu-devtools_63.2-2 init_1.57 init-system-helpers_1.57 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapparmor1_2.13.2-9ubuntu7 libapt-pkg5.0_1.8.0~alpha2ubuntu1 libapt-pkg5.90_1.9.1 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.2 libasan5_9.1.0-9ubuntu2 libasn1-8-heimdal_7.5.0+dfsg-3 libassuan0_2.5.3-7ubuntu1 libatomic1_9.1.0-9ubuntu2 libattr1_1:2.4.48-4 libaudit-common_1:2.8.5-1ubuntu1 libaudit1_1:2.8.5-1ubuntu1 libbinutils_2.32.51.20190702-1ubuntu1 libblas-dev_3.8.0-2 libblas3_3.8.0-2 libblkid1_2.33.1-0.1ubuntu2 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9.2 libbz2-dev_1.0.6-9.2 libc-bin_2.29-0ubuntu3 libc-dev-bin_2.29-0ubuntu3 libc6_2.29-0ubuntu3 libc6-dev_2.29-0ubuntu3 libcairo2_1.16.0-4 libcap-ng0_0.7.9-2 libcap2_1:2.25-2 libcc1-0_9.1.0-9ubuntu2 libcom-err2_1.45.2-1ubuntu1 libcomerr2_1.45.2-1ubuntu1 libcroco3_0.6.12-3 libcryptsetup12_2:2.1.0-5ubuntu2 libcurl4_7.65.1-1ubuntu1 libdatrie1_0.2.12-2 libdb5.3_5.3.28+dfsg1-0.6ubuntu1 libdebconfclient0_0.249ubuntu1 libdevmapper1.02.1_2:1.02.155-2ubuntu4 libdpkg-perl_1.19.7ubuntu1 libelf1_0.176-1.1 libexpat1_2.2.7-1 libext2fs2_1.45.2-1ubuntu1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1ubuntu2 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.2.3-1 libfile-which-perl_1.23-1 libfontconfig1_2.13.1-2ubuntu2 libfreetype6_2.9.1-3 libfribidi0_1.0.5-3.1 libgcc-8-dev_8.3.0-19ubuntu1 libgcc-9-dev_9.1.0-9ubuntu2 libgcc1_1:9.1.0-9ubuntu2 libgcrypt20_1.8.4-5ubuntu1 libgdbm-compat4_1.18.1-4 libgdbm6_1.18.1-4 libgfortran-9-dev_9.1.0-9ubuntu2 libgfortran5_9.1.0-9ubuntu2 libglib2.0-0_2.61.1-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.8-2 libgomp1_9.1.0-9ubuntu2 libgpg-error0_1.36-7 libgraphite2-3_1.3.13-7 libgssapi-krb5-2_1.17-5 libgssapi3-heimdal_7.5.0+dfsg-3 libharfbuzz0b_2.5.3-1 libhcrypto4-heimdal_7.5.0+dfsg-3 libheimbase1-heimdal_7.5.0+dfsg-3 libheimntlm0-heimdal_7.5.0+dfsg-3 libhogweed4_3.4.1-1 libhx509-5-heimdal_7.5.0+dfsg-3 libice6_2:1.0.9-2 libicu-dev_63.2-2 libicu63_63.2-2 libidn11_1.33-2.2ubuntu2 libidn2-0_2.0.5-1 libip4tc0_1.6.1-2ubuntu3 libisl19_0.20-2 libisl21_0.21-1 libitm1_9.1.0-9ubuntu2 libjbig0_2.1-3.1build1 libjpeg-dev_8c-2ubuntu8 libjpeg-turbo8_2.0.1-0ubuntu2 libjpeg-turbo8-dev_2.0.1-0ubuntu2 libjpeg8_8c-2ubuntu8 libjpeg8-dev_8c-2ubuntu8 libjson-c3_0.12.1-1.3 libjson-c4_0.13.1+dfsg-2 libk5crypto3_1.17-5 libkeyutils1_1.6-6 libkmod2_26-1ubuntu1 libkrb5-26-heimdal_7.5.0+dfsg-3 libkrb5-3_1.17-5 libkrb5support0_1.17-5 liblapack-dev_3.8.0-2 liblapack3_3.8.0-2 libldap-2.4-2_2.4.47+dfsg-3ubuntu2 libldap-common_2.4.47+dfsg-3ubuntu2 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblz4-1_1.9.1-1 liblzma-dev_5.2.4-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-3 libmagic1_1:5.37-3 libmount1_2.33.1-0.1ubuntu2 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses-dev_6.1+20190713-1ubuntu1 libncurses5-dev_6.1+20190713-1ubuntu1 libncurses6_6.1+20190713-1ubuntu1 libncursesw6_6.1+20190713-1ubuntu1 libnettle6_3.4.1-1 libnghttp2-14_1.37.0-1 libnpth0_1.6-1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5ubuntu1 libpam-modules-bin_1.3.1-5ubuntu1 libpam-runtime_1.3.1-5ubuntu1 libpam0g_1.3.1-5ubuntu1 libpango-1.0-0_1.42.4-6 libpangocairo-1.0-0_1.42.4-6 libpangoft2-1.0-0_1.42.4-6 libpaper-utils_1.1.28 libpaper1_1.1.28 libpcre16-3_2:8.39-12 libpcre2-16-0_10.32-5 libpcre2-32-0_10.32-5 libpcre2-8-0_10.32-5 libpcre2-dev_10.32-5 libpcre2-posix0_10.32-5 libpcre3_2:8.39-12 libpcre3-dev_2:8.39-12 libpcre32-3_2:8.39-12 libpcrecpp0v5_2:8.39-12 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libpixman-1-0_0.36.0-1 libpng-dev_1.6.37-1 libpng16-16_1.6.37-1 libprocps7_2:3.3.15-2ubuntu2 libpsl5_0.20.2-2 libreadline-dev_8.0-2 libreadline7_7.0-5 libreadline8_8.0-2 libroken18-heimdal_7.5.0+dfsg-3 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27+dfsg-1 libsasl2-modules-db_2.1.27+dfsg-1 libseccomp2_2.4.1-0ubuntu0.19.10.3 libselinux1_2.9-2 libsemanage-common_2.9-2 libsemanage1_2.9-2 libsepol1_2.9-2 libsigsegv2_2.12-2 libslang2_2.3.2-4 libsm6_2:1.2.3-1 libsmartcols1_2.33.1-0.1ubuntu2 libsqlite3-0_3.29.0-1 libss2_1.45.2-1ubuntu1 libssh-4_0.9.0-1 libssl1.1_1.1.1c-1ubuntu3 libstdc++-8-dev_8.3.0-19ubuntu1 libstdc++-9-dev_9.1.0-9ubuntu2 libstdc++6_9.1.0-9ubuntu2 libsub-override-perl_0.09-2 libswitch-perl_2.17-2 libsystemd0_240-6ubuntu9 libtasn1-6_4.13-4 libtcl8.6_8.6.9+dfsg-2 libthai-data_0.1.28-2 libthai0_0.1.28-2 libtiff5_4.0.10-4 libtinfo6_6.1+20190713-1ubuntu1 libtk8.6_8.6.9-2 libtool_2.4.6-10 libubsan1_9.1.0-9ubuntu2 libuchardet0_0.0.6-3 libudev1_240-6ubuntu9 libunistring2_0.9.10-2 libusb-0.1-4_2:0.1.12-32 libustr-1.0-1_1.0.4-6 libuuid1_2.33.1-0.1ubuntu2 libwebp6_0.6.1-2 libwind0-heimdal_7.5.0+dfsg-3 libx11-6_2:1.6.7-1 libx11-data_2:1.6.7-1 libxau6_1:1.0.8-1 libxcb-render0_1.13.1-2 libxcb-shm0_1.13.1-2 libxcb1_1.13.1-2 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1 libxft2_2.3.2-2 libxml2_2.9.4+dfsg1-7ubuntu3 libxmuu1_2:1.1.2-2 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.1.5-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_5.2.0-8.9 lockfile-progs_0.1.18 login_1:4.5-1.1ubuntu2 lsb-base_10.2019051400ubuntu1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-2 mawk_1.3.3-17ubuntu3 mount_2.33.1-0.1ubuntu2 multiarch-support_2.29-0ubuntu3 ncurses-base_6.1+20181013-2ubuntu2 ncurses-bin_6.1+20190713-1ubuntu1 openssl_1.1.1c-1ubuntu3 optipng_0.7.7-1 passwd_1:4.5-1.1ubuntu2 patch_2.7.6-4 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 pinentry-curses_1.1.0-2 pkg-config_0.29.1-0ubuntu3 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu2 r-base-core_3.6.1-2 r-base-dev_3.6.1-2 r-bioc-biobase_2.44.0-1 r-bioc-biocgenerics_0.30.0-2 r-bioc-biocparallel_1.18.0-1 r-bioc-biostrings_2.52.0-1 r-bioc-delayedarray_0.10.0+dfsg-1 r-bioc-genomeinfodb_1.20.0-1 r-bioc-genomeinfodbdata_1.2.1-1 r-bioc-genomicalignments_1.20.1-1 r-bioc-genomicranges_1.36.0+dfsg-1 r-bioc-iranges_2.18.1-1 r-bioc-rsamtools_2.0.0-1 r-bioc-s4vectors_0.22.0-1 r-bioc-summarizedexperiment_1.14.0+dfsg-1 r-bioc-xvector_0.24.0-1 r-bioc-zlibbioc_1.30.0+dfsg-1 r-cran-bitops_1.0-6-4 r-cran-formatr_1.7-1 r-cran-futile.logger_1.4.3-3 r-cran-futile.options_1.0.1-2 r-cran-hwriter_1.3.2-3 r-cran-lambda.r_1.2.3-2 r-cran-lattice_0.20-38-1 r-cran-latticeextra_0.6-28-2build2 r-cran-matrix_1.2-17-1 r-cran-matrixstats_0.54.0-1 r-cran-rcolorbrewer_1.1-2-2 r-cran-rcurl_1.95-4.12-1 r-cran-snow_1:0.4.3-1 readline-common_8.0-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-shortread-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 systemd_240-6ubuntu9 systemd-sysv_240-6ubuntu9 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.93-8ubuntu1 tar_1.30+dfsg-6 tzdata_2019b-1 ubuntu-keyring_2018.09.18.1 ucf_3.0038+nmu1 unzip_6.0-24ubuntu1 util-linux_2.33.1-0.1ubuntu2 x11-common_1:7.7+19ubuntu12 xauth_1:1.0.10-1 xdg-utils_1.1.3-1ubuntu2 xz-utils_5.2.4-1 zip_3.0-11build1 zlib1g_1:1.2.11.dfsg-1ubuntu2 zlib1g-dev_1:1.2.11.dfsg-1ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Fri Jul 19 08:51:12 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-bioc-shortread_1.42.0-1.dsc dpkg-source: info: extracting r-bioc-shortread in r-bioc-shortread-1.42.0 dpkg-source: info: unpacking r-bioc-shortread_1.42.0.orig.tar.gz dpkg-source: info: unpacking r-bioc-shortread_1.42.0-1.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-17293359 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-17293359 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-17293359 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package r-bioc-shortread dpkg-buildpackage: info: source version 1.42.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x fakeroot debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules build-arch dh build-arch --buildsystem R dh_update_autotools_config -a -O--buildsystem=R dh_autoreconf -a -O--buildsystem=R dh_auto_configure -a -O--buildsystem=R dh_auto_build -a -O--buildsystem=R dh_auto_test -a -O--buildsystem=R create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --buildsystem R dh_testroot -a -O--buildsystem=R dh_prep -a -O--buildsystem=R dh_auto_install -a -O--buildsystem=R I: R packages needed for DEP8: runit I: R Package: ShortRead Version: 1.42.0 I: Building using R version 3.6.1-2 I: R API version: r-api-3.5 I: Using built-time from d/changelog: Fri, 19 Jul 2019 10:45:56 +0200 mkdir -p /<>/debian/r-bioc-shortread/usr/lib/R/site-library R CMD INSTALL -l /<>/debian/r-bioc-shortread/usr/lib/R/site-library --clean . "--built-timestamp='Fri, 19 Jul 2019 10:45:56 +0200'" * installing *source* package ‘ShortRead’ ... ** using staged installation checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for gzeof in -lz... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking size of unsigned long... 8 configure: creating ./config.status config.status: creating src/Makevars ** libs make[1]: Entering directory '/<>/src' gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fPIC -g -O2 -fdebug-prefix-map=/build/r-base-e0YCnt/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Biostrings_stubs.c -o Biostrings_stubs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fPIC -g -O2 -fdebug-prefix-map=/build/r-base-e0YCnt/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c IRanges_stubs.c -o IRanges_stubs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fPIC -g -O2 -fdebug-prefix-map=/build/r-base-e0YCnt/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_ShortRead.c -o R_init_ShortRead.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fPIC -g -O2 -fdebug-prefix-map=/build/r-base-e0YCnt/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c S4Vectors_stubs.c -o S4Vectors_stubs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fPIC -g -O2 -fdebug-prefix-map=/build/r-base-e0YCnt/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XVector_stubs.c -o XVector_stubs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fPIC -g -O2 -fdebug-prefix-map=/build/r-base-e0YCnt/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c alphabet.c -o alphabet.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fPIC -g -O2 -fdebug-prefix-map=/build/r-base-e0YCnt/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c io.c -o io.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fPIC -g -O2 -fdebug-prefix-map=/build/r-base-e0YCnt/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c io_bowtie.c -o io_bowtie.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fPIC -g -O2 -fdebug-prefix-map=/build/r-base-e0YCnt/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c io_soap.c -o io_soap.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_LIBZ=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DSIZEOF_UNSIGNED_LONG=8 -fPIC -g -O2 -fdebug-prefix-map=/build/r-base-e0YCnt/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readBfaToc.cc -o readBfaToc.o readBfaToc.cc: In function ‘SEXPREC* readBfaToc(SEXP)’: readBfaToc.cc:35:19: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 35 | (void) fread( seq_name, sizeof(char), name_len, fp ); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readBfaToc.cc:36:19: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 36 | (void) fread( &seq_ori_len, sizeof(int), 1, fp ); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readBfaToc.cc:37:19: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 37 | (void) fread( &seq_len, sizeof(int), 1, fp ); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_LIBZ=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DSIZEOF_UNSIGNED_LONG=8 -fPIC -g -O2 -fdebug-prefix-map=/build/r-base-e0YCnt/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c read_maq_map.cc -o read_maq_map.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fPIC -g -O2 -fdebug-prefix-map=/build/r-base-e0YCnt/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sampler.c -o sampler.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fPIC -g -O2 -fdebug-prefix-map=/build/r-base-e0YCnt/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c trim.c -o trim.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fPIC -g -O2 -fdebug-prefix-map=/build/r-base-e0YCnt/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c util.c -o util.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fPIC -g -O2 -fdebug-prefix-map=/build/r-base-e0YCnt/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xsnap.c -o xsnap.o g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o ShortRead.so Biostrings_stubs.o IRanges_stubs.o R_init_ShortRead.o S4Vectors_stubs.o XVector_stubs.o alphabet.o io.o io_bowtie.o io_soap.o readBfaToc.o read_maq_map.o sampler.o trim.o util.o xsnap.o -lz -fopenmp -L/usr/lib/R/lib -lR make[1]: Leaving directory '/<>/src' make[1]: Entering directory '/<>/src' make[1]: Leaving directory '/<>/src' installing to /<>/debian/r-bioc-shortread/usr/lib/R/site-library/00LOCK-r-bioc-shortread-1.42.0/00new/ShortRead/libs ** R ** inst ** byte-compile and prepare package for lazy loading Warning message: multiple methods tables found for ‘lengths’ code for methods in class “ShortReadFile” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) code for methods in class “FastqFileReader” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) code for methods in class “QAData” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) code for methods in class “Snapshot” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) code for methods in class “SpTrellis” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) code for methods in class “FastqSampler” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) code for methods in class “FastqStreamer” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: multiple methods tables found for ‘lengths’ Bad system call Warning in system(paste("file", shQuote(l)), intern = TRUE) : running command 'file '/<>/debian/r-bioc-shortread/usr/lib/R/site-library/00LOCK-r-bioc-shortread-1.42.0/00new/ShortRead/libs/ShortRead.so'' had status 159 ** testing if installed package can be loaded from final location Warning: multiple methods tables found for ‘lengths’ ** testing if installed package keeps a record of temporary installation path * DONE (ShortRead) I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.23.3) I: Using r-bioc-biocparallel for Depends:BiocParallel I: Using r-bioc-biostrings for Depends:Biostrings (>= 2.47.6) I: Using r-bioc-rsamtools for Depends:Rsamtools (>= 1.31.2) I: Using r-bioc-genomicalignments for Depends:GenomicAlignments (>= 1.15.6) I: Using r-cran-runit for Recommends:runit W: Cannot find a debian package for Suggests:BiocStyle I: Using r-bioc-biomart for Suggests:biomaRt I: Using r-bioc-genomicfeatures for Suggests:GenomicFeatures W: Cannot find a debian package for Suggests:yeastNagalakshmi I: Using r-bioc-biobase for Imports:Biobase I: Using r-bioc-s4vectors for Imports:S4Vectors (>= 0.17.25) I: Using r-bioc-iranges for Imports:IRanges (>= 2.13.12) I: Using r-bioc-genomeinfodb for Imports:GenomeInfoDb (>= 1.15.2) I: Using r-bioc-genomicranges for Imports:GenomicRanges (>= 1.31.8) I: Using r-cran-hwriter for Imports:hwriter I: Using r-bioc-zlibbioc for Imports:zlibbioc I: Using r-cran-lattice for Imports:lattice I: Using r-cran-latticeextra for Imports:latticeExtra I: BioConductor API version: r-api-bioc-3.9 dh_installdocs -a -O--buildsystem=R dh_installchangelogs -a -O--buildsystem=R dh_installinit -a -O--buildsystem=R dh_installsystemduser -a -O--buildsystem=R dh_perl -a -O--buildsystem=R dh_link -a -O--buildsystem=R dh_strip_nondeterminism -a -O--buildsystem=R Use of uninitialized value in pattern match (m//) at /usr/share/perl5/File/StripNondeterminism.pm line 59. Use of uninitialized value in pattern match (m//) at /usr/share/perl5/File/StripNondeterminism.pm line 59. Use of uninitialized value in pattern match (m//) at /usr/share/perl5/File/StripNondeterminism.pm line 59. dh_compress -a -O--buildsystem=R dh_fixperms -a -O--buildsystem=R dh_missing -a -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -a -O--buildsystem=R dh_gencontrol -a -O--buildsystem=R dh_md5sums -a -O--buildsystem=R dh_builddeb -a -O--buildsystem=R INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing r-bioc-shortread (in debian/r-bioc-shortread); do_strip: , oemstrip: pkgstriptranslations: processing r-bioc-shortread-dbgsym (in debian/.debhelper/r-bioc-shortread/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-bioc-shortread/DEBIAN/control, package r-bioc-shortread, directory debian/r-bioc-shortread pkgstripfiles: Truncating usr/share/doc/r-bioc-shortread/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-bioc-shortread ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-bioc-shortread' in '../r-bioc-shortread_1.42.0-1_s390x.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/r-bioc-shortread/dbgsym-root/DEBIAN/control, package r-bioc-shortread-dbgsym, directory debian/.debhelper/r-bioc-shortread/dbgsym-root dpkg-deb: building package 'r-bioc-shortread-dbgsym' in 'debian/.debhelper/scratch-space/build-r-bioc-shortread/r-bioc-shortread-dbgsym_1.42.0-1_s390x.deb'. Renaming r-bioc-shortread-dbgsym_1.42.0-1_s390x.deb to r-bioc-shortread-dbgsym_1.42.0-1_s390x.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../r-bioc-shortread_1.42.0-1_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20190720-1746 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-bioc-shortread_1.42.0-1_s390x.changes: ---------------------------------------- Format: 1.8 Date: Fri, 19 Jul 2019 10:45:56 +0200 Source: r-bioc-shortread Binary: r-bioc-shortread Architecture: s390x Version: 1.42.0-1 Distribution: eoan-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: r-bioc-shortread - GNU R classes and methods for high-throughput short-read sequenci Changes: r-bioc-shortread (1.42.0-1) unstable; urgency=medium . [ Dylan Aïssi ] * Remove patch and use r-bioc-zlibbioc. . [ Andreas Tille ] * New upstream version * debhelper 12 * Standards-Version: 4.4.0 * Remove trailing whitespace in debian/copyright Checksums-Sha1: d6c0e0efedf598cabdd97d32d5f6179fccdadd1b 162680 r-bioc-shortread-dbgsym_1.42.0-1_s390x.ddeb 447f266ad088a17469014b6f35c95864b55ef0b1 9639 r-bioc-shortread_1.42.0-1_s390x.buildinfo d74b305a735da5ca80dfc3033134f8e30cb665b4 5012144 r-bioc-shortread_1.42.0-1_s390x.deb Checksums-Sha256: 04bc328da41c085249f973d30a268f9bc50d8062770c415e91cc53bde0be9525 162680 r-bioc-shortread-dbgsym_1.42.0-1_s390x.ddeb 5d5a06af24d145a0b6505aedc5cc6492fe5fd01c5ad8f84b5a38c694663cff9b 9639 r-bioc-shortread_1.42.0-1_s390x.buildinfo bcdef68c438d7f7f139ee719e3f4b50e368e15e1036045050124f7f1d35ed8cf 5012144 r-bioc-shortread_1.42.0-1_s390x.deb Files: 2f136bef31fc4ee2a605294e03c4d808 162680 debug optional r-bioc-shortread-dbgsym_1.42.0-1_s390x.ddeb edc3fb04bf6fe117797380d4fe9cc7d6 9639 gnu-r optional r-bioc-shortread_1.42.0-1_s390x.buildinfo 4dfca91998e501c78ed66e51114ab50e 5012144 gnu-r optional r-bioc-shortread_1.42.0-1_s390x.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-bioc-shortread_1.42.0-1_s390x.deb ----------------------------------- new debian package, version 2.0. size 5012144 bytes: control archive=4172 bytes. 1359 bytes, 19 lines control 10811 bytes, 113 lines md5sums Package: r-bioc-shortread Version: 1.42.0-1 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian R Packages Maintainers Installed-Size: 7345 Depends: r-base-core (>= 3.6.1-2), r-api-3.5, r-api-bioc-3.9, r-bioc-biocgenerics (>= 0.23.3), r-bioc-biocparallel, r-bioc-biostrings (>= 2.47.6), r-bioc-rsamtools (>= 1.31.2), r-bioc-genomicalignments (>= 1.15.6), r-bioc-biobase, r-bioc-s4vectors (>= 0.17.25), r-bioc-iranges (>= 2.13.12), r-bioc-genomeinfodb (>= 1.15.2), r-bioc-genomicranges (>= 1.31.8), r-cran-hwriter, r-bioc-zlibbioc, r-cran-lattice, r-cran-latticeextra, libc6 (>= 2.7), libgcc1 (>= 1:3.0), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4) Recommends: r-cran-runit Suggests: r-bioc-biomart, r-bioc-genomicfeatures Section: gnu-r Priority: optional Homepage: https://bioconductor.org/packages/ShortRead/ Description: GNU R classes and methods for high-throughput short-read sequencing data This BioConductor module is a package for input, quality assessment, manipulation and output of high-throughput sequencing data. ShortRead is provided in the R and Bioconductor environments, allowing ready access to additional facilities for advanced statistical analysis, data transformation, visualization and integration with diverse genomic resources. drwxr-xr-x root/root 0 2019-07-19 08:45 ./ drwxr-xr-x root/root 0 2019-07-19 08:45 ./usr/ drwxr-xr-x root/root 0 2019-07-19 08:45 ./usr/lib/ drwxr-xr-x root/root 0 2019-07-19 08:45 ./usr/lib/R/ drwxr-xr-x root/root 0 2019-07-19 08:45 ./usr/lib/R/site-library/ drwxr-xr-x root/root 0 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/ -rw-r--r-- root/root 1158 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/CITATION -rw-r--r-- root/root 1495 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/DESCRIPTION -rw-r--r-- root/root 5917 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/INDEX drwxr-xr-x root/root 0 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/Meta/ -rw-r--r-- root/root 5606 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/Meta/Rd.rds -rw-r--r-- root/root 132 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/Meta/features.rds -rw-r--r-- root/root 5857 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/Meta/hsearch.rds -rw-r--r-- root/root 4220 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/Meta/links.rds -rw-r--r-- root/root 870 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/Meta/nsInfo.rds -rw-r--r-- root/root 1510 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/Meta/package.rds -rw-r--r-- root/root 261 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/Meta/vignette.rds -rw-r--r-- root/root 1157 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/NAMESPACE -rw-r--r-- root/root 12433 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/NEWS drwxr-xr-x root/root 0 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/R/ -rw-r--r-- root/root 1056 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/R/ShortRead -rw-r--r-- root/root 2201675 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/R/ShortRead.rdb -rw-r--r-- root/root 12088 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/R/ShortRead.rdx drwxr-xr-x root/root 0 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/doc/ -rw-r--r-- root/root 5961 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/doc/Overview.R -rw-r--r-- root/root 15627 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/doc/Overview.Rnw -rw-r--r-- root/root 176072 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/doc/Overview.pdf -rw-r--r-- root/root 1355 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/doc/index.html drwxr-xr-x root/root 0 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/extdata/ drwxr-xr-x root/root 0 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/extdata/Data/ drwxr-xr-x root/root 0 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/ drwxr-xr-x root/root 0 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/ drwxr-xr-x root/root 0 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/GERALD/ -rw-r--r-- root/root 31740 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/GERALD/s_1_sequence.txt -rw-r--r-- root/root 121368 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/GERALD/s_2_export.txt -rw-r--r-- root/root 90912 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/GERALD/s_5_0001_realign.txt -rw-r--r-- root/root 184320 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/s_1_0001_prb.txt -rw-r--r-- root/root 12452 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/s_1_0001_seq.txt -rw-r--r-- root/root 21534 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/s_1_1_0001_qseq.txt -rw-r--r-- root/root 261216 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/s_1_0001_int.txt -rw-r--r-- root/root 261028 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/s_1_0001_nse.txt drwxr-xr-x root/root 0 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/extdata/E-MTAB-1147/ -rw-r--r-- root/root 1408765 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/extdata/E-MTAB-1147/ERR127302_1_subset.fastq.gz -rw-r--r-- root/root 1402866 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/extdata/E-MTAB-1147/ERR127302_2_subset.fastq.gz drwxr-xr-x root/root 0 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/extdata/bowtie/ -rw-r--r-- root/root 117004 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/extdata/bowtie/s_1_aligned_bowtie.txt drwxr-xr-x root/root 0 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/extdata/maq/ -rw-r--r-- root/root 131501 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/extdata/maq/out.aln.1.txt -rw-r--r-- root/root 133413 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/extdata/maq/out.aln.2.txt drwxr-xr-x root/root 0 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/help/ -rw-r--r-- root/root 20812 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/help/AnIndex -rw-r--r-- root/root 302702 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/help/ShortRead.rdb -rw-r--r-- root/root 1521 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/help/ShortRead.rdx -rw-r--r-- root/root 4287 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/help/aliases.rds -rw-r--r-- root/root 654 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/help/paths.rds drwxr-xr-x root/root 0 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/html/ -rw-r--r-- root/root 66173 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/html/00Index.html -rw-r--r-- root/root 1335 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/html/R.css drwxr-xr-x root/root 0 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/libs/ -rw-r--r-- root/root 146424 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/libs/ShortRead.so drwxr-xr-x root/root 0 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/script/ -rw-r--r-- root/root 308 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/script/qa-test.R drwxr-xr-x root/root 0 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/template/ -rw-r--r-- root/root 671 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/template/0000-Header.html -rw-r--r-- root/root 578 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/template/1000-Overview.html -rw-r--r-- root/root 140 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/template/1100-Overview-SolexaRealign.html -rw-r--r-- root/root 1177 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/template/2000-RunSummary.html -rw-r--r-- root/root 1998 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/template/3000-ReadDistribution.html -rw-r--r-- root/root 1209 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/template/4000-CycleSpecific.html -rw-r--r-- root/root 2439 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/template/5000-PerTile.html -rw-r--r-- root/root 342 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/template/6000-Alignment.html -rw-r--r-- root/root 257 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/template/7000-MultipleAlignment.html -rw-r--r-- root/root 249 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/template/8000-DepthOfCoverage.html -rw-r--r-- root/root 520 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/template/9000-AdapterContamination.html -rw-r--r-- root/root 108 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/template/9999-Footer.html -rw-r--r-- root/root 575 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/template/QA.css -rw-r--r-- root/root 402 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/template/QAAdapterContamination.html -rw-r--r-- root/root 146 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/template/QAFiltered.html -rw-r--r-- root/root 90 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/template/QAFlagged.html -rw-r--r-- root/root 108 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/template/QAFooter.html -rw-r--r-- root/root 155 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/template/QAFrequentSequence.html -rw-r--r-- root/root 670 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/template/QAHeader.html -rw-r--r-- root/root 336 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/template/QANucleotideByCycle.html -rw-r--r-- root/root 207 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/template/QANucleotideUse.html -rw-r--r-- root/root 654 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/template/QAQualityByCycle.html -rw-r--r-- root/root 216 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/template/QAQualityUse.html -rw-r--r-- root/root 279 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/template/QAReadQuality.html -rw-r--r-- root/root 1276 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/template/QASequenceUse.html -rw-r--r-- root/root 202 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/template/QASources.html drwxr-xr-x root/root 0 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/template/image/ -rw-r--r-- root/root 7692 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/template/image/bioclogo-small.gif -rw-r--r-- root/root 7073 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/template/qa_solexa.Rnw drwxr-xr-x root/root 0 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/ drwxr-xr-x root/root 0 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/cases/ -rw-r--r-- root/root 19136 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/cases/PE_export.txt.gz -rw-r--r-- root/root 475 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_0001_int_head.txt.p -rw-r--r-- root/root 475 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_0001_nse_head.txt.p -rw-r--r-- root/root 80 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_0001_pos_head.txt -rw-r--r-- root/root 79211 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_results_head.txt -rw-r--r-- root/root 250 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_sequence.8_lines_illegal_nucleotide.txt -rw-r--r-- root/root 240 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_sequence.8_lines_read_mismatch.txt -rw-r--r-- root/root 242 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_sequence.8_lines_read_quality_mismatch.txt -rw-r--r-- root/root 275 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_sequence.9_lines.txt -rw-r--r-- root/root 31740 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_sequence.txt -rw-r--r-- root/root 1408 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/cases/s_2_0001_realign_3col_head.txt -rw-r--r-- root/root 6609 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/cases/s_2_0001_realign_head.txt -rw-r--r-- root/root 1242 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/cases/s_2_export_run_as_factor.txt -rw-r--r-- root/root 945 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/cases/s_2_export_toIUPAC.txt -rw-r--r-- root/root 150 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/cases/sanger.fastq -rw-r--r-- root/root 2543 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/cases/soap.txt -rw-r--r-- root/root 174 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/cases/solexa.fastq -rw-r--r-- root/root 11481 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/test_AlignedRead.R -rw-r--r-- root/root 521 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/test_AllClasses.R -rw-r--r-- root/root 758 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/test_FastqFile.R -rw-r--r-- root/root 1194 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/test_Intensity.R -rw-r--r-- root/root 1661 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/test_SRError.R -rw-r--r-- root/root 7356 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/test_SRFilter.R -rw-r--r-- root/root 3126 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/test_SRFilterResult.R -rw-r--r-- root/root 568 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/test_SRList.R -rw-r--r-- root/root 459 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/test_SRVector.R -rw-r--r-- root/root 1150 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/test_ShortRead.R -rw-r--r-- root/root 8698 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/test_ShortReadQ.R -rw-r--r-- root/root 3244 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/test_SolexaIntensity.R -rw-r--r-- root/root 1659 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/test_append.R -rw-r--r-- root/root 2108 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/test_coverage.R -rw-r--r-- root/root 1152 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/test_filterFastq.R -rw-r--r-- root/root 4921 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/test_functions.R -rw-r--r-- root/root 1195 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/test_qa.R -rw-r--r-- root/root 1140 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/test_readPrb.R -rw-r--r-- root/root 1346 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/test_readQseq.R -rw-r--r-- root/root 2714 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/test_readXStringColumns.R -rw-r--r-- root/root 1054 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/test_renew.R -rw-r--r-- root/root 1783 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/test_trimEnds.R -rw-r--r-- root/root 2519 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/test_trimTails.R -rw-r--r-- root/root 1186 2019-07-19 08:45 ./usr/lib/R/site-library/ShortRead/unitTests/test_writeFastq.R drwxr-xr-x root/root 0 2019-07-19 08:45 ./usr/share/ drwxr-xr-x root/root 0 2019-07-19 08:45 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-07-19 08:45 ./usr/share/doc/r-bioc-shortread/ -rw-r--r-- root/root 373 2019-07-19 08:45 ./usr/share/doc/r-bioc-shortread/README.test -rw-r--r-- root/root 760 2019-07-19 08:45 ./usr/share/doc/r-bioc-shortread/changelog.Debian.gz -rw-r--r-- root/root 6309 2019-07-19 08:45 ./usr/share/doc/r-bioc-shortread/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build-Space: 21884 Build-Time: 47 Distribution: eoan-proposed Host Architecture: s390x Install-Time: 21 Job: r-bioc-shortread_1.42.0-1.dsc Machine Architecture: s390x Package: r-bioc-shortread Package-Time: 69 Source-Version: 1.42.0-1 Space: 21884 Status: successful Version: 1.42.0-1 -------------------------------------------------------------------------------- Finished at 20190720-1746 Build needed 00:01:09, 21884k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=eoan --arch=s390x PACKAGEBUILD-17293359 Scanning for processes to kill in build PACKAGEBUILD-17293359