https://launchpad.net/ubuntu/+source/r-bioc-shortread/1.44.0-1/+build/18089033 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-ppc64el-004 4.4.0-168-generic #197-Ubuntu SMP Wed Nov 6 11:13:58 UTC 2019 ppc64le Buildd toolchain package versions: launchpad-buildd_180 python-lpbuildd_180 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 14 Nov 21:26:12 ntpdate[1904]: adjust time server 10.211.37.1 offset 0.001730 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=ppc64el PACKAGEBUILD-18089033 --image-type chroot /home/buildd/filecache-default/dc614fa4772464ee6d43f8f857199c7f024663c7 Creating target for build PACKAGEBUILD-18089033 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=ppc64el PACKAGEBUILD-18089033 Starting target for build PACKAGEBUILD-18089033 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=ppc64el PACKAGEBUILD-18089033 'deb http://ftpmaster.internal/ubuntu focal main universe' 'deb http://ftpmaster.internal/ubuntu focal-security main universe' 'deb http://ftpmaster.internal/ubuntu focal-updates main universe' 'deb http://ftpmaster.internal/ubuntu focal-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-18089033 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=ppc64el PACKAGEBUILD-18089033 Updating target for build PACKAGEBUILD-18089033 Get:1 http://ftpmaster.internal/ubuntu focal InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu focal-security InRelease [79.7 kB] Get:3 http://ftpmaster.internal/ubuntu focal-updates InRelease [79.7 kB] Get:4 http://ftpmaster.internal/ubuntu focal-proposed InRelease [107 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main ppc64el Packages [942 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main Translation-en [507 kB] Get:7 http://ftpmaster.internal/ubuntu focal/universe ppc64el Packages [8526 kB] Get:8 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5205 kB] Get:9 http://ftpmaster.internal/ubuntu focal-proposed/main ppc64el Packages [50.2 kB] Get:10 http://ftpmaster.internal/ubuntu focal-proposed/main Translation-en [32.3 kB] Get:11 http://ftpmaster.internal/ubuntu focal-proposed/universe ppc64el Packages [309 kB] Get:12 http://ftpmaster.internal/ubuntu focal-proposed/universe Translation-en [171 kB] Fetched 16.3 MB in 3s (4854 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libhogweed4 libnettle6 libperl5.28 perl-modules-5.28 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libhogweed5 libnettle7 libperl5.30 perl-modules-5.30 The following packages will be upgraded: base-files bash binutils binutils-common binutils-powerpc64le-linux-gnu bzip2 cpp-9 debianutils g++-9 gcc-9 gcc-9-base hostname libacl1 libapparmor1 libasan5 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libbz2-1.0 libcap-ng0 libcap2 libcc1-0 libcryptsetup12 libdebconfclient0 libgcc-9-dev libgcc1 libgcrypt20 libgnutls30 libgomp1 libitm1 libjson-c4 libkmod2 liblockfile-bin liblockfile1 liblsan0 liblz4-1 libncurses6 libncursesw6 libp11-kit0 libquadmath0 libselinux1 libsemanage-common libsemanage1 libsqlite3-0 libstdc++-9-dev libstdc++6 libsystemd0 libtinfo6 libtsan0 libubsan1 libudev1 linux-libc-dev lsb-base ncurses-base ncurses-bin perl perl-base systemd systemd-sysv sysvinit-utils 62 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. Need to get 55.5 MB of archives. After this operation, 50.5 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu focal/main ppc64el base-files ppc64el 11ubuntu1 [60.7 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main ppc64el debianutils ppc64el 4.9 [86.7 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main ppc64el bash ppc64el 5.0-5ubuntu1 [716 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main ppc64el hostname ppc64el 3.23 [11.8 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main ppc64el ncurses-bin ppc64el 6.1+20191019-1ubuntu1 [179 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main ppc64el perl-modules-5.30 all 5.30.0-9 [2739 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main ppc64el libperl5.30 ppc64el 5.30.0-9 [3914 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main ppc64el perl ppc64el 5.30.0-9 [224 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main ppc64el perl-base ppc64el 5.30.0-9 [1494 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main ppc64el bzip2 ppc64el 1.0.8-2 [36.9 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main ppc64el libbz2-1.0 ppc64el 1.0.8-2 [43.3 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main ppc64el ncurses-base all 6.1+20191019-1ubuntu1 [17.9 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main ppc64el lsb-base all 11.1.0ubuntu1 [12.2 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main ppc64el sysvinit-utils ppc64el 2.96-1ubuntu1 [23.0 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main ppc64el systemd-sysv ppc64el 243-3ubuntu1 [9364 B] Get:16 http://ftpmaster.internal/ubuntu focal/main ppc64el libacl1 ppc64el 2.2.53-5 [20.3 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main ppc64el libapparmor1 ppc64el 2.13.3-5ubuntu5 [38.3 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main ppc64el libaudit-common all 1:2.8.5-2ubuntu2 [4080 B] Get:19 http://ftpmaster.internal/ubuntu focal/main ppc64el libcap-ng0 ppc64el 0.7.9-2.1 [11.7 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main ppc64el libaudit1 ppc64el 1:2.8.5-2ubuntu2 [42.6 kB] Get:21 http://ftpmaster.internal/ubuntu focal-proposed/main ppc64el libcap2 ppc64el 1:2.27-1 [15.2 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main ppc64el libjson-c4 ppc64el 0.13.1+dfsg-6 [33.1 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main ppc64el libcryptsetup12 ppc64el 2:2.2.2-1ubuntu1 [213 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main ppc64el libnettle7 ppc64el 3.5.1+really3.5.1-2 [145 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main ppc64el libhogweed5 ppc64el 3.5.1+really3.5.1-2 [140 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main ppc64el libp11-kit0 ppc64el 0.23.18.1-2 [199 kB] Get:27 http://ftpmaster.internal/ubuntu focal-proposed/main ppc64el libgnutls30 ppc64el 3.6.10-4 [765 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main ppc64el libkmod2 ppc64el 26-3ubuntu1 [50.1 kB] Get:29 http://ftpmaster.internal/ubuntu focal-proposed/main ppc64el liblz4-1 ppc64el 1.9.2-2 [62.0 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main ppc64el systemd ppc64el 243-3ubuntu1 [4400 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main ppc64el libsystemd0 ppc64el 243-3ubuntu1 [302 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main ppc64el libcc1-0 ppc64el 9.2.1-19ubuntu1 [52.8 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.33.1-1ubuntu1 [1789 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main ppc64el libbinutils ppc64el 2.33.1-1ubuntu1 [511 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main ppc64el binutils-common ppc64el 2.33.1-1ubuntu1 [203 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main ppc64el binutils ppc64el 2.33.1-1ubuntu1 [3396 B] Get:37 http://ftpmaster.internal/ubuntu focal/main ppc64el libgomp1 ppc64el 9.2.1-19ubuntu1 [92.4 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main ppc64el libitm1 ppc64el 9.2.1-19ubuntu1 [29.4 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main ppc64el libatomic1 ppc64el 9.2.1-19ubuntu1 [9936 B] Get:40 http://ftpmaster.internal/ubuntu focal/main ppc64el libasan5 ppc64el 9.2.1-19ubuntu1 [408 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main ppc64el liblsan0 ppc64el 9.2.1-19ubuntu1 [148 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main ppc64el libtsan0 ppc64el 9.2.1-19ubuntu1 [305 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main ppc64el libubsan1 ppc64el 9.2.1-19ubuntu1 [140 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main ppc64el libquadmath0 ppc64el 9.2.1-19ubuntu1 [149 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main ppc64el gcc-9-base ppc64el 9.2.1-19ubuntu1 [19.2 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main ppc64el libstdc++6 ppc64el 9.2.1-19ubuntu1 [543 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main ppc64el g++-9 ppc64el 9.2.1-19ubuntu1 [10.4 MB] Get:48 http://ftpmaster.internal/ubuntu focal/main ppc64el libstdc++-9-dev ppc64el 9.2.1-19ubuntu1 [1747 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main ppc64el libgcc-9-dev ppc64el 9.2.1-19ubuntu1 [1262 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main ppc64el gcc-9 ppc64el 9.2.1-19ubuntu1 [9762 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main ppc64el cpp-9 ppc64el 9.2.1-19ubuntu1 [9072 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main ppc64el libgcc1 ppc64el 1:9.2.1-19ubuntu1 [29.6 kB] Get:53 http://ftpmaster.internal/ubuntu focal/main ppc64el libattr1 ppc64el 1:2.4.48-5 [13.6 kB] Get:54 http://ftpmaster.internal/ubuntu focal-proposed/main ppc64el libdebconfclient0 ppc64el 0.250ubuntu1 [6316 B] Get:55 http://ftpmaster.internal/ubuntu focal/main ppc64el libgcrypt20 ppc64el 1.8.5-3ubuntu1 [439 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main ppc64el libncurses6 ppc64el 6.1+20191019-1ubuntu1 [120 kB] Get:57 http://ftpmaster.internal/ubuntu focal/main ppc64el libtinfo6 ppc64el 6.1+20191019-1ubuntu1 [101 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main ppc64el libncursesw6 ppc64el 6.1+20191019-1ubuntu1 [152 kB] Get:59 http://ftpmaster.internal/ubuntu focal-proposed/main ppc64el libselinux1 ppc64el 2.9-3 [82.3 kB] Get:60 http://ftpmaster.internal/ubuntu focal/main ppc64el libsemanage-common all 2.9-3build1 [9736 B] Get:61 http://ftpmaster.internal/ubuntu focal/main ppc64el libsemanage1 ppc64el 2.9-3build1 [95.2 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main ppc64el libudev1 ppc64el 243-3ubuntu1 [91.5 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main ppc64el libsqlite3-0 ppc64el 3.30.1-1 [568 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main ppc64el liblockfile-bin ppc64el 1.16-1.1 [12.1 kB] Get:65 http://ftpmaster.internal/ubuntu focal/main ppc64el liblockfile1 ppc64el 1.16-1.1 [7236 B] Get:66 http://ftpmaster.internal/ubuntu focal-proposed/main ppc64el linux-libc-dev ppc64el 5.3.0-21.22 [1079 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 55.5 MB in 1s (74.5 MB/s) (Reading database ... 12684 files and directories currently installed.) Preparing to unpack .../base-files_11ubuntu1_ppc64el.deb ... Unpacking base-files (11ubuntu1) over (10.2ubuntu7) ... Setting up base-files (11ubuntu1) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Updating /root/.profile to current default. (Reading database ... 12684 files and directories currently installed.) Preparing to unpack .../debianutils_4.9_ppc64el.deb ... Unpacking debianutils (4.9) over (4.8.6.3) ... Setting up debianutils (4.9) ... (Reading database ... 12684 files and directories currently installed.) Preparing to unpack .../bash_5.0-5ubuntu1_ppc64el.deb ... Unpacking bash (5.0-5ubuntu1) over (5.0-4ubuntu1) ... Setting up bash (5.0-5ubuntu1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12684 files and directories currently installed.) Preparing to unpack .../hostname_3.23_ppc64el.deb ... Unpacking hostname (3.23) over (3.22) ... Setting up hostname (3.23) ... (Reading database ... 12684 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.1+20191019-1ubuntu1_ppc64el.deb ... Unpacking ncurses-bin (6.1+20191019-1ubuntu1) over (6.1+20190803-1ubuntu1) ... Setting up ncurses-bin (6.1+20191019-1ubuntu1) ... (Reading database ... 12684 files and directories currently installed.) Preparing to unpack .../perl_5.30.0-9_ppc64el.deb ... Unpacking perl (5.30.0-9) over (5.28.1-6build1) ... Replacing files in old package perl-base (5.28.1-6build1) ... Selecting previously unselected package perl-modules-5.30. 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RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-18089033 ppc64el focal-proposed -c chroot:build-PACKAGEBUILD-18089033 --arch=ppc64el --dist=focal-proposed --nolog r-bioc-shortread_1.44.0-1.dsc Initiating build PACKAGEBUILD-18089033 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-168-generic #197-Ubuntu SMP Wed Nov 6 11:13:58 UTC 2019 ppc64le sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-ppc64el-004.buildd +==============================================================================+ | r-bioc-shortread 1.44.0-1 (ppc64el) 14 Nov 2019 21:26 | +==============================================================================+ Package: r-bioc-shortread Version: 1.44.0-1 Source Version: 1.44.0-1 Distribution: focal-proposed Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el I: NOTICE: Log filtering will replace 'build/r-bioc-shortread-xFHjL9/r-bioc-shortread-1.44.0' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-shortread-xFHjL9' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-18089033/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-bioc-shortread_1.44.0-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-lI7Trm/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-lI7Trm/apt_archive ./ InRelease Get:2 copy:/<>/resolver-lI7Trm/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-lI7Trm/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-lI7Trm/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-lI7Trm/apt_archive ./ Packages [528 B] Fetched 2861 B in 0s (250 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libhogweed4 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-lI7Trm/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14615 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper-compat (= 12), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.23.3), r-bioc-biocparallel, r-bioc-biostrings (>= 2.47.6), r-bioc-rsamtools (>= 1.31.2), r-bioc-genomicalignments (>= 1.15.6), r-bioc-biobase, r-bioc-s4vectors (>= 0.17.25), r-bioc-iranges (>= 2.13.12), r-bioc-genomeinfodb (>= 1.15.2), r-bioc-genomicranges (>= 1.31.8), r-cran-hwriter, r-bioc-zlibbioc, r-cran-lattice, r-cran-latticeextra, r-bioc-xvector Filtered Build-Depends: debhelper-compat (= 12), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.23.3), r-bioc-biocparallel, r-bioc-biostrings (>= 2.47.6), r-bioc-rsamtools (>= 1.31.2), r-bioc-genomicalignments (>= 1.15.6), r-bioc-biobase, r-bioc-s4vectors (>= 0.17.25), r-bioc-iranges (>= 2.13.12), r-bioc-genomeinfodb (>= 1.15.2), r-bioc-genomicranges (>= 1.31.8), r-cran-hwriter, r-bioc-zlibbioc, r-cran-lattice, r-cran-latticeextra, r-bioc-xvector dpkg-deb: building package 'sbuild-build-depends-r-bioc-shortread-dummy' in '/<>/resolver-eb5pFB/apt_archive/sbuild-build-depends-r-bioc-shortread-dummy.deb'. Ign:1 copy:/<>/resolver-eb5pFB/apt_archive ./ InRelease Get:2 copy:/<>/resolver-eb5pFB/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-eb5pFB/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-eb5pFB/apt_archive ./ Sources [379 B] Get:5 copy:/<>/resolver-eb5pFB/apt_archive ./ Packages [706 B] Fetched 3204 B in 0s (244 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install r-bioc-shortread build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libhogweed4 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-9 groff-base icu-devtools intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-9-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu-dev libicu63 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libncurses-dev libncurses5-dev libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix0 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db pkg-config po-debconf r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges r-bioc-rsamtools r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-bitops r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-hwriter r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-matrix r-cran-matrixstats r-cran-rcolorbrewer r-cran-rcurl r-cran-snow ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc gfortran-9-doc libgfortran5-dbg libcoarrays-dev groff liblapack-doc krb5-doc krb5-user icu-doc liblzma-doc ncurses-doc readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk m4-doc apparmor less www-browser libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc r-bioc-variantannotation r-bioc-shortread r-cran-codetools r-cran-knitr r-cran-data.table r-bioc-bsgenome r-bioc-genomicfeatures r-bioc-rtracklayer r-bioc-gviz r-bioc-annotationhub r-bioc-graph r-cran-rmarkdown r-cran-jsonlite r-bioc-rhdf5 r-cran-testthat r-cran-shiny r-cran-base64enc r-cran-ggplot2 r-cran-xml r-cran-rmpi r-cran-rsprng r-cran-rlecuyer Recommended packages: devscripts curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libpng-tools publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl r-recommended r-doc-html r-cran-runit r-cran-batchjobs r-cran-doparallel r-cran-batchtools r-cran-rmpi r-bioc-genefilter r-bioc-shortread r-cran-digest r-bioc-annotate r-cran-testit r-cran-codetools r-cran-survival r-cran-testthat libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-9 groff-base icu-devtools intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-9-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu-dev libicu63 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libncurses-dev libncurses5-dev libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix0 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db pkg-config po-debconf r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges r-bioc-rsamtools r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-bitops r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-hwriter r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-matrix r-cran-matrixstats r-cran-rcolorbrewer r-cran-rcurl r-cran-snow sbuild-build-depends-r-bioc-shortread-dummy ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 168 newly installed, 0 to remove and 0 not upgraded. Need to get 141 MB of archives. After this operation, 370 MB of additional disk space will be used. Get:1 copy:/<>/resolver-eb5pFB/apt_archive ./ sbuild-build-depends-r-bioc-shortread-dummy 0.invalid.0 [1028 B] Get:2 http://ftpmaster.internal/ubuntu focal/main ppc64el libbsd0 ppc64el 0.10.0-1 [55.1 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main ppc64el bsdmainutils ppc64el 11.1.2ubuntu2 [185 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main ppc64el libuchardet0 ppc64el 0.0.6-3 [67.7 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main ppc64el groff-base ppc64el 1.22.4-3 [936 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main ppc64el libpipeline1 ppc64el 1.5.1-2 [27.7 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main ppc64el man-db ppc64el 2.9.0-1 [1145 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main ppc64el libmagic-mgc ppc64el 1:5.37-6 [209 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main ppc64el libmagic1 ppc64el 1:5.37-6 [91.9 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main ppc64el file ppc64el 1:5.37-6 [24.0 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main ppc64el libelf1 ppc64el 0.176-1.1 [51.6 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main ppc64el libexpat1 ppc64el 2.2.9-1 [77.4 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main ppc64el libfribidi0 ppc64el 1.0.7-1.1 [24.7 kB] Get:14 http://ftpmaster.internal/ubuntu focal-proposed/main ppc64el libglib2.0-0 ppc64el 2.63.1-1 [1368 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main ppc64el libicu63 ppc64el 63.2-2 [8505 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main ppc64el libxml2 ppc64el 2.9.4+dfsg1-7ubuntu5 [680 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main ppc64el ucf all 3.0038+nmu1 [51.6 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main ppc64el gettext-base ppc64el 0.19.8.1-9 [52.8 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main ppc64el libkrb5support0 ppc64el 1.17-6 [35.4 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main ppc64el libk5crypto3 ppc64el 1.17-6 [102 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main ppc64el libkeyutils1 ppc64el 1.6-6ubuntu1 [11.3 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main ppc64el libkrb5-3 ppc64el 1.17-6 [371 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main ppc64el libgssapi-krb5-2 ppc64el 1.17-6 [135 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main ppc64el libpsl5 ppc64el 0.20.2-2 [52.2 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main ppc64el libxau6 ppc64el 1:1.0.9-0ubuntu1 [7876 B] Get:26 http://ftpmaster.internal/ubuntu focal/main ppc64el libxdmcp6 ppc64el 1:1.1.3-0ubuntu1 [11.8 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main ppc64el libxcb1 ppc64el 1.13.1-2 [51.1 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main ppc64el libx11-data all 2:1.6.8-1 [113 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main ppc64el libx11-6 ppc64el 2:1.6.8-1 [632 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main ppc64el libxext6 ppc64el 2:1.3.4-0ubuntu1 [35.1 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main ppc64el libxmuu1 ppc64el 2:1.1.3-0ubuntu1 [10.2 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main ppc64el xauth ppc64el 1:1.1-0ubuntu1 [28.2 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main ppc64el libsigsegv2 ppc64el 2.12-2 [13.9 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main ppc64el m4 ppc64el 1.4.18-4 [210 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main ppc64el autoconf all 2.69-11ubuntu1 [321 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main ppc64el autotools-dev all 20180224.1 [39.6 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main ppc64el automake all 1:1.16.1-4ubuntu3 [522 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main ppc64el autopoint all 0.19.8.1-9 [412 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main ppc64el dctrl-tools ppc64el 2.24-3 [64.6 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main ppc64el libtool all 2.4.6-11 [194 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main ppc64el dh-autoreconf all 19 [16.1 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main ppc64el libdebhelper-perl all 12.7.1ubuntu1 [52.0 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main ppc64el libarchive-zip-perl all 1.67-1 [90.4 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main ppc64el libsub-override-perl all 0.09-2 [9532 B] Get:45 http://ftpmaster.internal/ubuntu focal/main ppc64el libfile-stripnondeterminism-perl all 1.6.2-1 [16.1 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main ppc64el dh-strip-nondeterminism all 1.6.2-1 [5228 B] Get:47 http://ftpmaster.internal/ubuntu focal/main ppc64el dwz ppc64el 0.13-2 [131 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main ppc64el libcroco3 ppc64el 0.6.13-1 [92.1 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main ppc64el gettext ppc64el 0.19.8.1-9 [978 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main ppc64el intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main ppc64el po-debconf all 1.0.21 [233 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main ppc64el debhelper all 12.7.1ubuntu1 [875 kB] Get:53 http://ftpmaster.internal/ubuntu focal/main ppc64el zip ppc64el 3.0-11build1 [170 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main ppc64el unzip ppc64el 6.0-25ubuntu1 [173 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main ppc64el libpaper1 ppc64el 1.1.28 [13.2 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main ppc64el libpaper-utils ppc64el 1.1.28 [8688 B] Get:57 http://ftpmaster.internal/ubuntu focal/main ppc64el xdg-utils all 1.1.3-1ubuntu2 [60.5 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main ppc64el libblas3 ppc64el 3.8.0-8ubuntu1 [211 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main ppc64el libfreetype6 ppc64el 2.10.1-2 [412 kB] Get:60 http://ftpmaster.internal/ubuntu focal/main ppc64el fonts-dejavu-core all 2.37-1 [1041 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main ppc64el fontconfig-config all 2.13.1-2ubuntu2 [28.9 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main ppc64el libfontconfig1 ppc64el 2.13.1-2ubuntu2 [155 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main ppc64el libpixman-1-0 ppc64el 0.38.4-0ubuntu1 [267 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main ppc64el libxcb-render0 ppc64el 1.13.1-2 [15.6 kB] Get:65 http://ftpmaster.internal/ubuntu focal/main ppc64el libxcb-shm0 ppc64el 1.13.1-2 [5848 B] Get:66 http://ftpmaster.internal/ubuntu focal/main ppc64el libxrender1 ppc64el 1:0.9.10-1 [17.6 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main ppc64el libcairo2 ppc64el 1.16.0-4 [697 kB] Get:68 http://ftpmaster.internal/ubuntu focal/main ppc64el libbrotli1 ppc64el 1.0.7-5 [291 kB] Get:69 http://ftpmaster.internal/ubuntu focal/main ppc64el libroken18-heimdal ppc64el 7.5.0+dfsg-3build1 [46.6 kB] Get:70 http://ftpmaster.internal/ubuntu focal/main ppc64el libasn1-8-heimdal ppc64el 7.5.0+dfsg-3build1 [176 kB] Get:71 http://ftpmaster.internal/ubuntu focal/main ppc64el libheimbase1-heimdal ppc64el 7.5.0+dfsg-3build1 [32.4 kB] Get:72 http://ftpmaster.internal/ubuntu focal/main ppc64el libhcrypto4-heimdal ppc64el 7.5.0+dfsg-3build1 [108 kB] Get:73 http://ftpmaster.internal/ubuntu focal/main ppc64el libwind0-heimdal ppc64el 7.5.0+dfsg-3build1 [48.5 kB] Get:74 http://ftpmaster.internal/ubuntu focal/main ppc64el libhx509-5-heimdal ppc64el 7.5.0+dfsg-3build1 [120 kB] Get:75 http://ftpmaster.internal/ubuntu focal/main ppc64el libkrb5-26-heimdal ppc64el 7.5.0+dfsg-3build1 [233 kB] Get:76 http://ftpmaster.internal/ubuntu focal/main ppc64el libheimntlm0-heimdal ppc64el 7.5.0+dfsg-3build1 [17.4 kB] Get:77 http://ftpmaster.internal/ubuntu focal/main ppc64el libgssapi3-heimdal ppc64el 7.5.0+dfsg-3build1 [105 kB] Get:78 http://ftpmaster.internal/ubuntu focal/main ppc64el libsasl2-modules-db ppc64el 2.1.27+dfsg-1build3 [16.5 kB] Get:79 http://ftpmaster.internal/ubuntu focal/main ppc64el libsasl2-2 ppc64el 2.1.27+dfsg-1build3 [60.2 kB] Get:80 http://ftpmaster.internal/ubuntu focal/main ppc64el libldap-common all 2.4.48+dfsg-1ubuntu3 [17.3 kB] Get:81 http://ftpmaster.internal/ubuntu focal/main ppc64el libldap-2.4-2 ppc64el 2.4.48+dfsg-1ubuntu3 [175 kB] Get:82 http://ftpmaster.internal/ubuntu focal/main ppc64el libnghttp2-14 ppc64el 1.39.2-1 [92.0 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main ppc64el librtmp1 ppc64el 2.4+20151223.gitfa8646d.1-2build1 [59.3 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main ppc64el libssh-4 ppc64el 0.9.0-1ubuntu1 [229 kB] Get:85 http://ftpmaster.internal/ubuntu focal-proposed/main ppc64el libcurl4 ppc64el 7.66.0-1ubuntu1 [254 kB] Get:86 http://ftpmaster.internal/ubuntu focal/main ppc64el libjpeg-turbo8 ppc64el 2.0.3-0ubuntu1 [155 kB] Get:87 http://ftpmaster.internal/ubuntu focal/main ppc64el libjpeg8 ppc64el 8c-2ubuntu8 [2146 B] Get:88 http://ftpmaster.internal/ubuntu focal/main ppc64el libgfortran5 ppc64el 9.2.1-19ubuntu1 [398 kB] Get:89 http://ftpmaster.internal/ubuntu focal/main ppc64el liblapack3 ppc64el 3.8.0-8ubuntu1 [2087 kB] Get:90 http://ftpmaster.internal/ubuntu focal/main ppc64el fontconfig ppc64el 2.13.1-2ubuntu2 [173 kB] Get:91 http://ftpmaster.internal/ubuntu focal/main ppc64el libgraphite2-3 ppc64el 1.3.13-11 [73.3 kB] Get:92 http://ftpmaster.internal/ubuntu focal-proposed/main ppc64el libharfbuzz0b ppc64el 2.6.4-1 [432 kB] Get:93 http://ftpmaster.internal/ubuntu focal/main ppc64el libthai-data all 0.1.28-3 [134 kB] Get:94 http://ftpmaster.internal/ubuntu focal/main ppc64el libdatrie1 ppc64el 0.2.12-3 [20.4 kB] Get:95 http://ftpmaster.internal/ubuntu focal/main ppc64el libthai0 ppc64el 0.1.28-3 [19.4 kB] Get:96 http://ftpmaster.internal/ubuntu focal-proposed/main ppc64el libpango-1.0-0 ppc64el 1.44.7-1 [177 kB] Get:97 http://ftpmaster.internal/ubuntu focal-proposed/main ppc64el libpangoft2-1.0-0 ppc64el 1.44.7-1 [39.0 kB] Get:98 http://ftpmaster.internal/ubuntu focal-proposed/main ppc64el libpangocairo-1.0-0 ppc64el 1.44.7-1 [26.8 kB] Get:99 http://ftpmaster.internal/ubuntu focal/main ppc64el libtcl8.6 ppc64el 8.6.9+dfsg-2 [1020 kB] Get:100 http://ftpmaster.internal/ubuntu focal/main ppc64el libjbig0 ppc64el 2.1-3.1build1 [26.9 kB] Get:101 http://ftpmaster.internal/ubuntu focal/main ppc64el libwebp6 ppc64el 0.6.1-2 [225 kB] Get:102 http://ftpmaster.internal/ubuntu focal-proposed/main ppc64el libtiff5 ppc64el 4.1.0-1 [192 kB] Get:103 http://ftpmaster.internal/ubuntu focal/main ppc64el libxft2 ppc64el 2.3.3-0ubuntu1 [46.7 kB] Get:104 http://ftpmaster.internal/ubuntu focal/main ppc64el x11-common all 1:7.7+19ubuntu12 [22.4 kB] Get:105 http://ftpmaster.internal/ubuntu focal/main ppc64el libxss1 ppc64el 1:1.2.3-1 [8964 B] Get:106 http://ftpmaster.internal/ubuntu focal/main ppc64el libtk8.6 ppc64el 8.6.9-2 [796 kB] Get:107 http://ftpmaster.internal/ubuntu focal/main ppc64el libice6 ppc64el 2:1.0.10-0ubuntu1 [46.1 kB] Get:108 http://ftpmaster.internal/ubuntu focal/main ppc64el libsm6 ppc64el 2:1.2.3-1 [17.6 kB] Get:109 http://ftpmaster.internal/ubuntu focal/main ppc64el libxt6 ppc64el 1:1.1.5-1 [152 kB] Get:110 http://ftpmaster.internal/ubuntu focal/universe ppc64el r-base-core ppc64el 3.6.1-7 [24.6 MB] Get:111 http://ftpmaster.internal/ubuntu focal/main ppc64el libgfortran-9-dev ppc64el 9.2.1-19ubuntu1 [462 kB] Get:112 http://ftpmaster.internal/ubuntu focal/main ppc64el gfortran-9 ppc64el 9.2.1-19ubuntu1 [9779 kB] Get:113 http://ftpmaster.internal/ubuntu focal/main ppc64el gfortran ppc64el 4:9.2.1-3.1ubuntu1 [1368 B] Get:114 http://ftpmaster.internal/ubuntu focal/main ppc64el libblas-dev ppc64el 3.8.0-8ubuntu1 [224 kB] Get:115 http://ftpmaster.internal/ubuntu focal/main ppc64el liblapack-dev ppc64el 3.8.0-8ubuntu1 [4365 kB] Get:116 http://ftpmaster.internal/ubuntu focal/main ppc64el libncurses-dev ppc64el 6.1+20191019-1ubuntu1 [412 kB] Get:117 http://ftpmaster.internal/ubuntu focal/main ppc64el libncurses5-dev ppc64el 6.1+20191019-1ubuntu1 [992 B] Get:118 http://ftpmaster.internal/ubuntu focal/main ppc64el libreadline-dev ppc64el 8.0-3 [180 kB] Get:119 http://ftpmaster.internal/ubuntu focal/main ppc64el libjpeg-turbo8-dev ppc64el 2.0.3-0ubuntu1 [276 kB] Get:120 http://ftpmaster.internal/ubuntu focal/main ppc64el libjpeg8-dev ppc64el 8c-2ubuntu8 [1606 B] Get:121 http://ftpmaster.internal/ubuntu focal/main ppc64el libjpeg-dev ppc64el 8c-2ubuntu8 [1602 B] Get:122 http://ftpmaster.internal/ubuntu focal/main ppc64el libpcre2-16-0 ppc64el 10.32-5 [173 kB] Get:123 http://ftpmaster.internal/ubuntu focal/main ppc64el libpcre2-32-0 ppc64el 10.32-5 [166 kB] Get:124 http://ftpmaster.internal/ubuntu focal/main ppc64el libpcre2-posix0 ppc64el 10.32-5 [5972 B] Get:125 http://ftpmaster.internal/ubuntu focal/main ppc64el libpcre2-dev ppc64el 10.32-5 [622 kB] Get:126 http://ftpmaster.internal/ubuntu focal/main ppc64el libpcre16-3 ppc64el 2:8.39-12 [159 kB] Get:127 http://ftpmaster.internal/ubuntu focal/main ppc64el libpcre32-3 ppc64el 2:8.39-12 [145 kB] Get:128 http://ftpmaster.internal/ubuntu focal/main ppc64el libpcrecpp0v5 ppc64el 2:8.39-12 [16.9 kB] Get:129 http://ftpmaster.internal/ubuntu focal/main ppc64el libpcre3-dev ppc64el 2:8.39-12 [550 kB] Get:130 http://ftpmaster.internal/ubuntu focal/main ppc64el zlib1g-dev ppc64el 1:1.2.11.dfsg-1ubuntu3 [176 kB] Get:131 http://ftpmaster.internal/ubuntu focal/main ppc64el libpng-dev ppc64el 1.6.37-1 [214 kB] Get:132 http://ftpmaster.internal/ubuntu focal/main ppc64el libbz2-dev ppc64el 1.0.8-2 [43.2 kB] Get:133 http://ftpmaster.internal/ubuntu focal/main ppc64el liblzma-dev ppc64el 5.2.4-1 [166 kB] Get:134 http://ftpmaster.internal/ubuntu focal/main ppc64el icu-devtools ppc64el 63.2-2 [199 kB] Get:135 http://ftpmaster.internal/ubuntu focal/main ppc64el libicu-dev ppc64el 63.2-2 [9625 kB] Get:136 http://ftpmaster.internal/ubuntu focal/main ppc64el pkg-config ppc64el 0.29.1-0ubuntu3 [49.3 kB] Get:137 http://ftpmaster.internal/ubuntu focal/universe ppc64el r-base-dev all 3.6.1-7 [4528 B] Get:138 http://ftpmaster.internal/ubuntu focal/main ppc64el libfile-which-perl all 1.23-1 [13.8 kB] Get:139 http://ftpmaster.internal/ubuntu focal/universe ppc64el libswitch-perl all 2.17-2 [18.8 kB] Get:140 http://ftpmaster.internal/ubuntu focal/universe ppc64el dh-r all 20190917 [32.7 kB] Get:141 http://ftpmaster.internal/ubuntu focal-proposed/universe ppc64el r-bioc-biocgenerics all 0.32.0-1 [639 kB] Get:142 http://ftpmaster.internal/ubuntu focal-proposed/universe ppc64el r-bioc-biobase ppc64el 2.46.0-1 [2223 kB] Get:143 http://ftpmaster.internal/ubuntu focal/universe ppc64el r-cran-formatr all 1.7-1 [147 kB] Get:144 http://ftpmaster.internal/ubuntu focal/universe ppc64el r-cran-lambda.r all 1.2.4-1 [119 kB] Get:145 http://ftpmaster.internal/ubuntu focal/universe ppc64el r-cran-futile.options all 1.0.1-2 [19.8 kB] Get:146 http://ftpmaster.internal/ubuntu focal/universe ppc64el r-cran-futile.logger all 1.4.3-3 [102 kB] Get:147 http://ftpmaster.internal/ubuntu focal/universe ppc64el r-cran-snow all 1:0.4.3-1 [107 kB] Get:148 http://ftpmaster.internal/ubuntu focal-proposed/universe ppc64el r-bioc-biocparallel ppc64el 1.20.0-1 [1073 kB] Get:149 http://ftpmaster.internal/ubuntu focal-proposed/universe ppc64el r-bioc-s4vectors ppc64el 0.24.0-1 [1951 kB] Get:150 http://ftpmaster.internal/ubuntu focal-proposed/universe ppc64el r-bioc-iranges ppc64el 2.20.0-1 [2210 kB] Get:151 http://ftpmaster.internal/ubuntu focal-proposed/universe ppc64el r-bioc-zlibbioc all 1.32.0+dfsg-1 [8820 B] Get:152 http://ftpmaster.internal/ubuntu focal-proposed/universe ppc64el r-bioc-xvector ppc64el 0.26.0-1 [615 kB] Get:153 http://ftpmaster.internal/ubuntu focal-proposed/universe ppc64el r-bioc-biostrings ppc64el 2.54.0-1 [14.2 MB] Get:154 http://ftpmaster.internal/ubuntu focal/universe ppc64el r-cran-matrixstats ppc64el 0.55.0-1 [796 kB] Get:155 http://ftpmaster.internal/ubuntu focal/universe ppc64el r-cran-lattice ppc64el 0.20-38-1 [1111 kB] Get:156 http://ftpmaster.internal/ubuntu focal/universe ppc64el r-cran-matrix ppc64el 1.2-17-2 [3502 kB] Get:157 http://ftpmaster.internal/ubuntu focal-proposed/universe ppc64el r-bioc-delayedarray ppc64el 0.12.0+dfsg-1 [1658 kB] Get:158 http://ftpmaster.internal/ubuntu focal/universe ppc64el r-cran-bitops ppc64el 1.0-6-4 [23.5 kB] Get:159 http://ftpmaster.internal/ubuntu focal/universe ppc64el r-cran-rcurl ppc64el 1.95-4.12-1 [723 kB] Get:160 http://ftpmaster.internal/ubuntu focal/universe ppc64el r-bioc-genomeinfodbdata all 1.2.2-1 [10.2 MB] Get:161 http://ftpmaster.internal/ubuntu focal-proposed/universe ppc64el r-bioc-genomeinfodb all 1.22.0-1 [3686 kB] Get:162 http://ftpmaster.internal/ubuntu focal-proposed/universe ppc64el r-bioc-genomicranges ppc64el 1.38.0+dfsg-1 [1833 kB] Get:163 http://ftpmaster.internal/ubuntu focal-proposed/universe ppc64el r-bioc-summarizedexperiment all 1.16.0+dfsg-1 [1892 kB] Get:164 http://ftpmaster.internal/ubuntu focal-proposed/universe ppc64el r-bioc-rsamtools ppc64el 2.2.1-1 [3772 kB] Get:165 http://ftpmaster.internal/ubuntu focal-proposed/universe ppc64el r-bioc-genomicalignments ppc64el 1.22.0-1 [2124 kB] Get:166 http://ftpmaster.internal/ubuntu focal/universe ppc64el r-cran-hwriter all 1.3.2-3 [158 kB] Get:167 http://ftpmaster.internal/ubuntu focal/universe ppc64el r-cran-rcolorbrewer all 1.1-2-2 [54.4 kB] Get:168 http://ftpmaster.internal/ubuntu focal/universe ppc64el r-cran-latticeextra ppc64el 0.6-28-2build2 [2181 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 141 MB in 2s (66.0 MB/s) Selecting previously unselected package libbsd0:ppc64el. (Reading database ... 14615 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.10.0-1_ppc64el.deb ... Unpacking libbsd0:ppc64el (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2ubuntu2_ppc64el.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package libuchardet0:ppc64el. Preparing to unpack .../002-libuchardet0_0.0.6-3_ppc64el.deb ... Unpacking libuchardet0:ppc64el (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-3_ppc64el.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:ppc64el. Preparing to unpack .../004-libpipeline1_1.5.1-2_ppc64el.deb ... Unpacking libpipeline1:ppc64el (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.9.0-1_ppc64el.deb ... Unpacking man-db (2.9.0-1) ... 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Selecting previously unselected package libjpeg-turbo8:ppc64el. Preparing to unpack .../084-libjpeg-turbo8_2.0.3-0ubuntu1_ppc64el.deb ... Unpacking libjpeg-turbo8:ppc64el (2.0.3-0ubuntu1) ... Selecting previously unselected package libjpeg8:ppc64el. Preparing to unpack .../085-libjpeg8_8c-2ubuntu8_ppc64el.deb ... Unpacking libjpeg8:ppc64el (8c-2ubuntu8) ... Selecting previously unselected package libgfortran5:ppc64el. Preparing to unpack .../086-libgfortran5_9.2.1-19ubuntu1_ppc64el.deb ... Unpacking libgfortran5:ppc64el (9.2.1-19ubuntu1) ... Selecting previously unselected package liblapack3:ppc64el. Preparing to unpack .../087-liblapack3_3.8.0-8ubuntu1_ppc64el.deb ... Unpacking liblapack3:ppc64el (3.8.0-8ubuntu1) ... Selecting previously unselected package fontconfig. Preparing to unpack .../088-fontconfig_2.13.1-2ubuntu2_ppc64el.deb ... Unpacking fontconfig (2.13.1-2ubuntu2) ... Selecting previously unselected package libgraphite2-3:ppc64el. 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Selecting previously unselected package libsm6:ppc64el. Preparing to unpack .../106-libsm6_2%3a1.2.3-1_ppc64el.deb ... Unpacking libsm6:ppc64el (2:1.2.3-1) ... Selecting previously unselected package libxt6:ppc64el. Preparing to unpack .../107-libxt6_1%3a1.1.5-1_ppc64el.deb ... Unpacking libxt6:ppc64el (1:1.1.5-1) ... Selecting previously unselected package r-base-core. Preparing to unpack .../108-r-base-core_3.6.1-7_ppc64el.deb ... Unpacking r-base-core (3.6.1-7) ... Selecting previously unselected package libgfortran-9-dev:ppc64el. Preparing to unpack .../109-libgfortran-9-dev_9.2.1-19ubuntu1_ppc64el.deb ... Unpacking libgfortran-9-dev:ppc64el (9.2.1-19ubuntu1) ... Selecting previously unselected package gfortran-9. Preparing to unpack .../110-gfortran-9_9.2.1-19ubuntu1_ppc64el.deb ... Unpacking gfortran-9 (9.2.1-19ubuntu1) ... Selecting previously unselected package gfortran. Preparing to unpack .../111-gfortran_4%3a9.2.1-3.1ubuntu1_ppc64el.deb ... Unpacking gfortran (4:9.2.1-3.1ubuntu1) ... Selecting previously unselected package libblas-dev:ppc64el. Preparing to unpack .../112-libblas-dev_3.8.0-8ubuntu1_ppc64el.deb ... Unpacking libblas-dev:ppc64el (3.8.0-8ubuntu1) ... Selecting previously unselected package liblapack-dev:ppc64el. Preparing to unpack .../113-liblapack-dev_3.8.0-8ubuntu1_ppc64el.deb ... Unpacking liblapack-dev:ppc64el (3.8.0-8ubuntu1) ... Selecting previously unselected package libncurses-dev:ppc64el. Preparing to unpack .../114-libncurses-dev_6.1+20191019-1ubuntu1_ppc64el.deb ... Unpacking libncurses-dev:ppc64el (6.1+20191019-1ubuntu1) ... Selecting previously unselected package libncurses5-dev:ppc64el. Preparing to unpack .../115-libncurses5-dev_6.1+20191019-1ubuntu1_ppc64el.deb ... Unpacking libncurses5-dev:ppc64el (6.1+20191019-1ubuntu1) ... Selecting previously unselected package libreadline-dev:ppc64el. Preparing to unpack .../116-libreadline-dev_8.0-3_ppc64el.deb ... Unpacking libreadline-dev:ppc64el (8.0-3) ... Selecting previously unselected package libjpeg-turbo8-dev:ppc64el. Preparing to unpack .../117-libjpeg-turbo8-dev_2.0.3-0ubuntu1_ppc64el.deb ... Unpacking libjpeg-turbo8-dev:ppc64el (2.0.3-0ubuntu1) ... Selecting previously unselected package libjpeg8-dev:ppc64el. Preparing to unpack .../118-libjpeg8-dev_8c-2ubuntu8_ppc64el.deb ... Unpacking libjpeg8-dev:ppc64el (8c-2ubuntu8) ... Selecting previously unselected package libjpeg-dev:ppc64el. Preparing to unpack .../119-libjpeg-dev_8c-2ubuntu8_ppc64el.deb ... Unpacking libjpeg-dev:ppc64el (8c-2ubuntu8) ... Selecting previously unselected package libpcre2-16-0:ppc64el. Preparing to unpack .../120-libpcre2-16-0_10.32-5_ppc64el.deb ... Unpacking libpcre2-16-0:ppc64el (10.32-5) ... Selecting previously unselected package libpcre2-32-0:ppc64el. Preparing to unpack .../121-libpcre2-32-0_10.32-5_ppc64el.deb ... Unpacking libpcre2-32-0:ppc64el (10.32-5) ... Selecting previously unselected package libpcre2-posix0:ppc64el. Preparing to unpack .../122-libpcre2-posix0_10.32-5_ppc64el.deb ... Unpacking libpcre2-posix0:ppc64el (10.32-5) ... Selecting previously unselected package libpcre2-dev:ppc64el. Preparing to unpack .../123-libpcre2-dev_10.32-5_ppc64el.deb ... Unpacking libpcre2-dev:ppc64el (10.32-5) ... Selecting previously unselected package libpcre16-3:ppc64el. Preparing to unpack .../124-libpcre16-3_2%3a8.39-12_ppc64el.deb ... Unpacking libpcre16-3:ppc64el (2:8.39-12) ... Selecting previously unselected package libpcre32-3:ppc64el. Preparing to unpack .../125-libpcre32-3_2%3a8.39-12_ppc64el.deb ... Unpacking libpcre32-3:ppc64el (2:8.39-12) ... Selecting previously unselected package libpcrecpp0v5:ppc64el. Preparing to unpack .../126-libpcrecpp0v5_2%3a8.39-12_ppc64el.deb ... Unpacking libpcrecpp0v5:ppc64el (2:8.39-12) ... Selecting previously unselected package libpcre3-dev:ppc64el. 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Selecting previously unselected package sbuild-build-depends-r-bioc-shortread-dummy. Preparing to unpack .../167-sbuild-build-depends-r-bioc-shortread-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-r-bioc-shortread-dummy (0.invalid.0) ... Setting up libexpat1:ppc64el (2.2.9-1) ... Setting up libpcrecpp0v5:ppc64el (2:8.39-12) ... Setting up libpipeline1:ppc64el (1.5.1-2) ... Setting up libgraphite2-3:ppc64el (1.3.13-11) ... Setting up libpixman-1-0:ppc64el (0.38.4-0ubuntu1) ... Setting up libfile-which-perl (1.23-1) ... Setting up libxau6:ppc64el (1:1.0.9-0ubuntu1) ... Setting up libkeyutils1:ppc64el (1.6-6ubuntu1) ... Setting up libncurses-dev:ppc64el (6.1+20191019-1ubuntu1) ... Setting up libpsl5:ppc64el (0.20.2-2) ... Setting up libpcre16-3:ppc64el (2:8.39-12) ... Setting up libdatrie1:ppc64el (0.2.12-3) ... Setting up libmagic-mgc (1:5.37-6) ... Setting up libarchive-zip-perl (1.67-1) ... Setting up libglib2.0-0:ppc64el (2.63.1-1) ... No schema files found: doing nothing. Setting up unzip (6.0-25ubuntu1) ... Setting up libdebhelper-perl (12.7.1ubuntu1) ... Setting up libbrotli1:ppc64el (1.0.7-5) ... Setting up x11-common (1:7.7+19ubuntu12) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libnghttp2-14:ppc64el (1.39.2-1) ... Setting up libmagic1:ppc64el (1:5.37-6) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.37-6) ... Setting up libreadline-dev:ppc64el (8.0-3) ... Setting up libldap-common (2.4.48+dfsg-1ubuntu3) ... Setting up libjbig0:ppc64el (2.1-3.1build1) ... Setting up libpcre2-16-0:ppc64el (10.32-5) ... Setting up libicu63:ppc64el (63.2-2) ... Setting up libkrb5support0:ppc64el (1.17-6) ... Setting up libsasl2-modules-db:ppc64el (2.1.27+dfsg-1build3) ... Setting up zip (3.0-11build1) ... Setting up autotools-dev (20180224.1) ... Setting up libpcre2-32-0:ppc64el (10.32-5) ... Setting up libblas3:ppc64el (3.8.0-8ubuntu1) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode Setting up libpcre2-posix0:ppc64el (10.32-5) ... Setting up libswitch-perl (2.17-2) ... Setting up libfreetype6:ppc64el (2.10.1-2) ... Setting up libx11-data (2:1.6.8-1) ... Setting up librtmp1:ppc64el (2.4+20151223.gitfa8646d.1-2build1) ... Setting up libsigsegv2:ppc64el (2.12-2) ... Setting up libfribidi0:ppc64el (1.0.7-1.1) ... Setting up libpcre32-3:ppc64el (2:8.39-12) ... Setting up libtcl8.6:ppc64el (8.6.9+dfsg-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libwebp6:ppc64el (0.6.1-2) ... Setting up icu-devtools (63.2-2) ... Setting up pkg-config (0.29.1-0ubuntu3) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up ucf (3.0038+nmu1) ... Setting up libk5crypto3:ppc64el (1.17-6) ... Setting up libjpeg-turbo8:ppc64el (2.0.3-0ubuntu1) ... Setting up libsasl2-2:ppc64el (2.1.27+dfsg-1build3) ... Setting up libgfortran5:ppc64el (9.2.1-19ubuntu1) ... Setting up libroken18-heimdal:ppc64el (7.5.0+dfsg-3build1) ... Setting up liblzma-dev:ppc64el (5.2.4-1) ... Setting up zlib1g-dev:ppc64el (1:1.2.11.dfsg-1ubuntu3) ... Setting up libuchardet0:ppc64el (0.0.6-3) ... Setting up libncurses5-dev:ppc64el (6.1+20191019-1ubuntu1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libharfbuzz0b:ppc64el (2.6.4-1) ... Setting up libthai-data (0.1.28-3) ... Setting up libkrb5-3:ppc64el (1.17-6) ... Setting up libbsd0:ppc64el (0.10.0-1) ... Setting up libelf1:ppc64el (0.176-1.1) ... Setting up libicu-dev:ppc64el (63.2-2) ... Setting up libxml2:ppc64el (2.9.4+dfsg1-7ubuntu5) ... Setting up xdg-utils (1.1.3-1ubuntu2) ... Setting up libblas-dev:ppc64el (3.8.0-8ubuntu1) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so to provide /usr/lib/powerpc64le-linux-gnu/libblas.so (libblas.so-powerpc64le-linux-gnu) in auto mode Setting up dctrl-tools (2.24-3) ... Setting up libheimbase1-heimdal:ppc64el (7.5.0+dfsg-3build1) ... Setting up libbz2-dev:ppc64el (1.0.8-2) ... Setting up libjpeg8:ppc64el (8c-2ubuntu8) ... Setting up libfile-stripnondeterminism-perl (1.6.2-1) ... Setting up libpaper1:ppc64el (1.1.28) ... Creating config file /etc/papersize with new version Setting up libice6:ppc64el (2:1.0.10-0ubuntu1) ... Setting up libjpeg-turbo8-dev:ppc64el (2.0.3-0ubuntu1) ... Setting up libxdmcp6:ppc64el (1:1.1.3-0ubuntu1) ... Setting up liblapack3:ppc64el (3.8.0-8ubuntu1) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode Setting up libxcb1:ppc64el (1.13.1-2) ... Setting up libpcre2-dev:ppc64el (10.32-5) ... Setting up libtool (2.4.6-11) ... Setting up libxcb-render0:ppc64el (1.13.1-2) ... Setting up libpcre3-dev:ppc64el (2:8.39-12) ... Setting up fontconfig-config (2.13.1-2ubuntu2) ... Setting up libasn1-8-heimdal:ppc64el (7.5.0+dfsg-3build1) ... Setting up libpng-dev:ppc64el (1.6.37-1) ... Setting up libgfortran-9-dev:ppc64el (9.2.1-19ubuntu1) ... Setting up m4 (1.4.18-4) ... Setting up libxcb-shm0:ppc64el (1.13.1-2) ... Setting up libpaper-utils (1.1.28) ... Setting up libhcrypto4-heimdal:ppc64el (7.5.0+dfsg-3build1) ... Setting up libthai0:ppc64el (0.1.28-3) ... Setting up libwind0-heimdal:ppc64el (7.5.0+dfsg-3build1) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up liblapack-dev:ppc64el (3.8.0-8ubuntu1) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so (liblapack.so-powerpc64le-linux-gnu) in auto mode Setting up libgssapi-krb5-2:ppc64el (1.17-6) ... Setting up libcroco3:ppc64el (0.6.13-1) ... Setting up libssh-4:ppc64el (0.9.0-1ubuntu1) ... Setting up autoconf (2.69-11ubuntu1) ... Setting up dh-strip-nondeterminism (1.6.2-1) ... Setting up dwz (0.13-2) ... Setting up groff-base (1.22.4-3) ... Setting up libx11-6:ppc64el (2:1.6.8-1) ... Setting up libtiff5:ppc64el (4.1.0-1) ... Setting up libfontconfig1:ppc64el (2.13.1-2ubuntu2) ... Setting up libjpeg8-dev:ppc64el (8c-2ubuntu8) ... Setting up libsm6:ppc64el (2:1.2.3-1) ... Setting up libxmuu1:ppc64el (2:1.1.3-0ubuntu1) ... Setting up automake (1:1.16.1-4ubuntu3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up fontconfig (2.13.1-2ubuntu2) ... Regenerating fonts cache... done. Setting up gettext (0.19.8.1-9) ... Setting up libxrender1:ppc64el (1:0.9.10-1) ... Setting up gfortran-9 (9.2.1-19ubuntu1) ... Setting up libhx509-5-heimdal:ppc64el (7.5.0+dfsg-3build1) ... Setting up libpango-1.0-0:ppc64el (1.44.7-1) ... Setting up libjpeg-dev:ppc64el (8c-2ubuntu8) ... Setting up libxext6:ppc64el (2:1.3.4-0ubuntu1) ... Setting up man-db (2.9.0-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up gfortran (4:9.2.1-3.1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:ppc64el (1.16.0-4) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxt6:ppc64el (1:1.1.5-1) ... Setting up xauth (1:1.1-0ubuntu1) ... Setting up libxss1:ppc64el (1:1.2.3-1) ... Setting up libpangoft2-1.0-0:ppc64el (1.44.7-1) ... Setting up libpangocairo-1.0-0:ppc64el (1.44.7-1) ... Setting up libkrb5-26-heimdal:ppc64el (7.5.0+dfsg-3build1) ... Setting up libxft2:ppc64el (2.3.3-0ubuntu1) ... Setting up po-debconf (1.0.21) ... Setting up libtk8.6:ppc64el (8.6.9-2) ... Setting up libheimntlm0-heimdal:ppc64el (7.5.0+dfsg-3build1) ... Setting up libgssapi3-heimdal:ppc64el (7.5.0+dfsg-3build1) ... Setting up libldap-2.4-2:ppc64el (2.4.48+dfsg-1ubuntu3) ... Setting up libcurl4:ppc64el (7.66.0-1ubuntu1) ... Setting up r-base-core (3.6.1-7) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-futile.options (1.0.1-2) ... Setting up r-cran-lattice (0.20-38-1) ... Setting up r-cran-formatr (1.7-1) ... Setting up r-bioc-genomeinfodbdata (1.2.2-1) ... Setting up r-bioc-biocgenerics (0.32.0-1) ... Setting up r-cran-matrixstats (0.55.0-1) ... Setting up r-base-dev (3.6.1-7) ... Setting up r-cran-lambda.r (1.2.4-1) ... Setting up r-cran-snow (1:0.4.3-1) ... Setting up r-cran-bitops (1.0-6-4) ... Setting up r-bioc-zlibbioc (1.32.0+dfsg-1) ... Setting up r-bioc-biobase (2.46.0-1) ... Setting up r-cran-hwriter (1.3.2-3) ... Setting up r-cran-rcolorbrewer (1.1-2-2) ... Setting up r-bioc-s4vectors (0.24.0-1) ... Setting up r-cran-futile.logger (1.4.3-3) ... Setting up r-cran-matrix (1.2-17-2) ... Setting up r-bioc-iranges (2.20.0-1) ... Setting up r-cran-rcurl (1.95-4.12-1) ... Setting up r-bioc-biocparallel (1.20.0-1) ... Setting up r-cran-latticeextra (0.6-28-2build2) ... Setting up r-bioc-genomeinfodb (1.22.0-1) ... Setting up r-bioc-xvector (0.26.0-1) ... Setting up r-bioc-delayedarray (0.12.0+dfsg-1) ... Setting up r-bioc-genomicranges (1.38.0+dfsg-1) ... Setting up r-bioc-biostrings (2.54.0-1) ... Setting up r-bioc-rsamtools (2.2.1-1) ... Setting up r-bioc-summarizedexperiment (1.16.0+dfsg-1) ... Setting up r-bioc-genomicalignments (1.22.0-1) ... Setting up dh-autoreconf (19) ... Setting up debhelper (12.7.1ubuntu1) ... Setting up dh-r (20190917) ... Setting up sbuild-build-depends-r-bioc-shortread-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.30-0ubuntu2) ... 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lsb-base_11.1.0ubuntu1 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-1 mawk_1.3.3-17ubuntu3 mount_2.34-0.1ubuntu2 ncurses-base_6.1+20191019-1ubuntu1 ncurses-bin_6.1+20191019-1ubuntu1 openssl_1.1.1c-1ubuntu4 optipng_0.7.7-1 passwd_1:4.5-1.1ubuntu4 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6build1 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 pkg-config_0.29.1-0ubuntu3 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu3 r-base-core_3.6.1-7 r-base-dev_3.6.1-7 r-bioc-biobase_2.46.0-1 r-bioc-biocgenerics_0.32.0-1 r-bioc-biocparallel_1.20.0-1 r-bioc-biostrings_2.54.0-1 r-bioc-delayedarray_0.12.0+dfsg-1 r-bioc-genomeinfodb_1.22.0-1 r-bioc-genomeinfodbdata_1.2.2-1 r-bioc-genomicalignments_1.22.0-1 r-bioc-genomicranges_1.38.0+dfsg-1 r-bioc-iranges_2.20.0-1 r-bioc-rsamtools_2.2.1-1 r-bioc-s4vectors_0.24.0-1 r-bioc-summarizedexperiment_1.16.0+dfsg-1 r-bioc-xvector_0.26.0-1 r-bioc-zlibbioc_1.32.0+dfsg-1 r-cran-bitops_1.0-6-4 r-cran-formatr_1.7-1 r-cran-futile.logger_1.4.3-3 r-cran-futile.options_1.0.1-2 r-cran-hwriter_1.3.2-3 r-cran-lambda.r_1.2.4-1 r-cran-lattice_0.20-38-1 r-cran-latticeextra_0.6-28-2build2 r-cran-matrix_1.2-17-2 r-cran-matrixstats_0.55.0-1 r-cran-rcolorbrewer_1.1-2-2 r-cran-rcurl_1.95-4.12-1 r-cran-snow_1:0.4.3-1 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-shortread-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 systemd_243-3ubuntu1 systemd-sysv_243-3ubuntu1 sysvinit-utils_2.96-1ubuntu1 tar_1.30+dfsg-6 tzdata_2019c-3 ubuntu-keyring_2018.09.18.1 ucf_3.0038+nmu1 unzip_6.0-25ubuntu1 util-linux_2.34-0.1ubuntu2 x11-common_1:7.7+19ubuntu12 xauth_1:1.1-0ubuntu1 xdg-utils_1.1.3-1ubuntu2 xz-utils_5.2.4-1 zip_3.0-11build1 zlib1g_1:1.2.11.dfsg-1ubuntu3 zlib1g-dev_1:1.2.11.dfsg-1ubuntu3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon Nov 11 12:48:34 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-bioc-shortread_1.44.0-1.dsc dpkg-source: info: extracting r-bioc-shortread in r-bioc-shortread-1.44.0 dpkg-source: info: unpacking r-bioc-shortread_1.44.0.orig.tar.gz dpkg-source: info: unpacking r-bioc-shortread_1.44.0-1.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-18089033 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-18089033 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-18089033 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package r-bioc-shortread dpkg-buildpackage: info: source version 1.44.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el fakeroot debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules build-arch dh build-arch --buildsystem R dh_update_autotools_config -a -O--buildsystem=R dh_autoreconf -a -O--buildsystem=R dh_auto_configure -a -O--buildsystem=R dh_auto_build -a -O--buildsystem=R dh_auto_test -a -O--buildsystem=R create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --buildsystem R dh_testroot -a -O--buildsystem=R dh_prep -a -O--buildsystem=R dh_auto_install -a -O--buildsystem=R I: R packages needed for DEP8: runit I: R Package: ShortRead Version: 1.44.0 I: Building using R version 3.6.1-7 I: R API version: r-api-3.5 I: Using built-time from d/changelog: Mon, 11 Nov 2019 11:46:22 +0100 mkdir -p /<>/debian/r-bioc-shortread/usr/lib/R/site-library R CMD INSTALL -l /<>/debian/r-bioc-shortread/usr/lib/R/site-library --clean . "--built-timestamp='Mon, 11 Nov 2019 11:46:22 +0100'" * installing *source* package ‘ShortRead’ ... ** using staged installation checking for gcc... gcc -std=gnu99 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc -std=gnu99 accepts -g... yes checking for gcc -std=gnu99 option to accept ISO C89... none needed checking for gzeof in -lz... yes checking how to run the C preprocessor... gcc -std=gnu99 -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking size of unsigned long... 8 configure: creating ./config.status config.status: creating src/Makevars ** libs make[1]: Entering directory '/<>/src' gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/build/r-base-Ym3dG_/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Biostrings_stubs.c -o Biostrings_stubs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/build/r-base-Ym3dG_/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c IRanges_stubs.c -o IRanges_stubs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/build/r-base-Ym3dG_/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_ShortRead.c -o R_init_ShortRead.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/build/r-base-Ym3dG_/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c S4Vectors_stubs.c -o S4Vectors_stubs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/build/r-base-Ym3dG_/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XVector_stubs.c -o XVector_stubs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/build/r-base-Ym3dG_/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c alphabet.c -o alphabet.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/build/r-base-Ym3dG_/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c io.c -o io.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/build/r-base-Ym3dG_/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c io_bowtie.c -o io_bowtie.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/build/r-base-Ym3dG_/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c io_soap.c -o io_soap.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_LIBZ=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DSIZEOF_UNSIGNED_LONG=8 -fPIC -g -O3 -fdebug-prefix-map=/build/r-base-Ym3dG_/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readBfaToc.cc -o readBfaToc.o readBfaToc.cc: In function ‘SEXPREC* readBfaToc(SEXP)’: readBfaToc.cc:35:19: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 35 | (void) fread( seq_name, sizeof(char), name_len, fp ); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readBfaToc.cc:36:19: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 36 | (void) fread( &seq_ori_len, sizeof(int), 1, fp ); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readBfaToc.cc:37:19: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 37 | (void) fread( &seq_len, sizeof(int), 1, fp ); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_LIBZ=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DSIZEOF_UNSIGNED_LONG=8 -fPIC -g -O3 -fdebug-prefix-map=/build/r-base-Ym3dG_/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c read_maq_map.cc -o read_maq_map.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/build/r-base-Ym3dG_/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sampler.c -o sampler.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/build/r-base-Ym3dG_/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c trim.c -o trim.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/build/r-base-Ym3dG_/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c util.c -o util.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fPIC -g -O3 -fdebug-prefix-map=/build/r-base-Ym3dG_/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xsnap.c -o xsnap.o g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o ShortRead.so Biostrings_stubs.o IRanges_stubs.o R_init_ShortRead.o S4Vectors_stubs.o XVector_stubs.o alphabet.o io.o io_bowtie.o io_soap.o readBfaToc.o read_maq_map.o sampler.o trim.o util.o xsnap.o -lz -fopenmp -L/usr/lib/R/lib -lR make[1]: Leaving directory '/<>/src' make[1]: Entering directory '/<>/src' make[1]: Leaving directory '/<>/src' installing to /<>/debian/r-bioc-shortread/usr/lib/R/site-library/00LOCK-r-bioc-shortread-1.44.0/00new/ShortRead/libs ** R ** inst ** byte-compile and prepare package for lazy loading code for methods in class “ShortReadFile” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) code for methods in class “FastqFileReader” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) code for methods in class “QAData” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) code for methods in class “Snapshot” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) code for methods in class “SpTrellis” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) code for methods in class “FastqSampler” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) code for methods in class “FastqStreamer” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ShortRead) I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.23.3) I: Using r-bioc-biocparallel for Depends:BiocParallel I: Using r-bioc-biostrings for Depends:Biostrings (>= 2.47.6) I: Using r-bioc-rsamtools for Depends:Rsamtools (>= 1.31.2) I: Using r-bioc-genomicalignments for Depends:GenomicAlignments (>= 1.15.6) I: Using r-cran-runit for Recommends:runit W: Cannot find a debian package for Suggests:BiocStyle I: Using r-bioc-biomart for Suggests:biomaRt I: Using r-bioc-genomicfeatures for Suggests:GenomicFeatures W: Cannot find a debian package for Suggests:yeastNagalakshmi I: Using r-bioc-biobase for Imports:Biobase I: Using r-bioc-s4vectors for Imports:S4Vectors (>= 0.17.25) I: Using r-bioc-iranges for Imports:IRanges (>= 2.13.12) I: Using r-bioc-genomeinfodb for Imports:GenomeInfoDb (>= 1.15.2) I: Using r-bioc-genomicranges for Imports:GenomicRanges (>= 1.31.8) I: Using r-cran-hwriter for Imports:hwriter I: Using r-bioc-zlibbioc for Imports:zlibbioc I: Using r-cran-lattice for Imports:lattice I: Using r-cran-latticeextra for Imports:latticeExtra I: BioConductor API version: r-api-bioc-3.10 dh_installdocs -a -O--buildsystem=R dh_installchangelogs -a -O--buildsystem=R dh_installinit -a -O--buildsystem=R dh_installsystemduser -a -O--buildsystem=R dh_perl -a -O--buildsystem=R dh_link -a -O--buildsystem=R dh_strip_nondeterminism -a -O--buildsystem=R dh_compress -a -O--buildsystem=R dh_fixperms -a -O--buildsystem=R dh_missing -a -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -a -O--buildsystem=R dh_gencontrol -a -O--buildsystem=R dh_md5sums -a -O--buildsystem=R dh_builddeb -a -O--buildsystem=R INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing r-bioc-shortread (in debian/r-bioc-shortread); do_strip: , oemstrip: pkgstriptranslations: processing r-bioc-shortread-dbgsym (in debian/.debhelper/r-bioc-shortread/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-bioc-shortread/DEBIAN/control, package r-bioc-shortread, directory debian/r-bioc-shortread pkgstripfiles: Truncating usr/share/doc/r-bioc-shortread/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-bioc-shortread ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-bioc-shortread' in '../r-bioc-shortread_1.44.0-1_ppc64el.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/r-bioc-shortread/dbgsym-root/DEBIAN/control, package r-bioc-shortread-dbgsym, directory debian/.debhelper/r-bioc-shortread/dbgsym-root dpkg-deb: building package 'r-bioc-shortread-dbgsym' in 'debian/.debhelper/scratch-space/build-r-bioc-shortread/r-bioc-shortread-dbgsym_1.44.0-1_ppc64el.deb'. Renaming r-bioc-shortread-dbgsym_1.44.0-1_ppc64el.deb to r-bioc-shortread-dbgsym_1.44.0-1_ppc64el.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../r-bioc-shortread_1.44.0-1_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20191114-2128 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-bioc-shortread_1.44.0-1_ppc64el.changes: ------------------------------------------ Format: 1.8 Date: Mon, 11 Nov 2019 11:46:22 +0100 Source: r-bioc-shortread Binary: r-bioc-shortread Architecture: ppc64el Version: 1.44.0-1 Distribution: focal-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: r-bioc-shortread - GNU R classes and methods for high-throughput short-read sequenci Changes: r-bioc-shortread (1.44.0-1) unstable; urgency=medium . * New upstream version * Fixed debian/watch for BioConductor * debhelper-compat 12 * Standards-Version: 4.4.1 * debian/copyright: Use spaces rather than tabs in continuation lines. Checksums-Sha1: f29d0ce483ef72b1d7a41569bbc1d1f10f985b06 162112 r-bioc-shortread-dbgsym_1.44.0-1_ppc64el.ddeb 8fafd12dc5f88750f4acbca8e8b5febc2d36e270 9852 r-bioc-shortread_1.44.0-1_ppc64el.buildinfo 62b578e364f317e4fbee40b90710f7033d84e2b5 5018268 r-bioc-shortread_1.44.0-1_ppc64el.deb Checksums-Sha256: b4db224c6af80fed27fdd247f9d731d6ff3ed7444f93287c847ee8971d16947f 162112 r-bioc-shortread-dbgsym_1.44.0-1_ppc64el.ddeb 819dd17eabc2707c3dbe4e4699f2781e81751df6cfce733c8b00385936727039 9852 r-bioc-shortread_1.44.0-1_ppc64el.buildinfo 1c625157c100f938229884c02df8570e710677b69f6bb8f41c5c2281e340cc10 5018268 r-bioc-shortread_1.44.0-1_ppc64el.deb Files: f26754ce9855e7614ef10ab490500fd7 162112 debug optional r-bioc-shortread-dbgsym_1.44.0-1_ppc64el.ddeb 14e18613b7f72100e446096098250429 9852 gnu-r optional r-bioc-shortread_1.44.0-1_ppc64el.buildinfo b315a238e8728dbb333c92bb460291ce 5018268 gnu-r optional r-bioc-shortread_1.44.0-1_ppc64el.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-bioc-shortread_1.44.0-1_ppc64el.deb ------------------------------------- new debian package, version 2.0. size 5018268 bytes: control archive=4180 bytes. 1363 bytes, 19 lines control 10811 bytes, 113 lines md5sums Package: r-bioc-shortread Version: 1.44.0-1 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian R Packages Maintainers Installed-Size: 7399 Depends: r-base-core (>= 3.6.1-7), r-api-3.5, r-api-bioc-3.10, r-bioc-biocgenerics (>= 0.23.3), r-bioc-biocparallel, r-bioc-biostrings (>= 2.47.6), r-bioc-rsamtools (>= 1.31.2), r-bioc-genomicalignments (>= 1.15.6), r-bioc-biobase, r-bioc-s4vectors (>= 0.17.25), r-bioc-iranges (>= 2.13.12), r-bioc-genomeinfodb (>= 1.15.2), r-bioc-genomicranges (>= 1.31.8), r-cran-hwriter, r-bioc-zlibbioc, r-cran-lattice, r-cran-latticeextra, libc6 (>= 2.17), libgcc1 (>= 1:3.0), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4) Recommends: r-cran-runit Suggests: r-bioc-biomart, r-bioc-genomicfeatures Section: gnu-r Priority: optional Homepage: https://bioconductor.org/packages/ShortRead/ Description: GNU R classes and methods for high-throughput short-read sequencing data This BioConductor module is a package for input, quality assessment, manipulation and output of high-throughput sequencing data. ShortRead is provided in the R and Bioconductor environments, allowing ready access to additional facilities for advanced statistical analysis, data transformation, visualization and integration with diverse genomic resources. drwxr-xr-x root/root 0 2019-11-11 10:46 ./ drwxr-xr-x root/root 0 2019-11-11 10:46 ./usr/ drwxr-xr-x root/root 0 2019-11-11 10:46 ./usr/lib/ drwxr-xr-x root/root 0 2019-11-11 10:46 ./usr/lib/R/ drwxr-xr-x root/root 0 2019-11-11 10:46 ./usr/lib/R/site-library/ drwxr-xr-x root/root 0 2019-11-11 10:46 ./usr/lib/R/site-library/ShortRead/ -rw-r--r-- root/root 1158 2019-11-11 10:46 ./usr/lib/R/site-library/ShortRead/CITATION -rw-r--r-- root/root 1506 2019-11-11 10:46 ./usr/lib/R/site-library/ShortRead/DESCRIPTION -rw-r--r-- root/root 5917 2019-11-11 10:46 ./usr/lib/R/site-library/ShortRead/INDEX drwxr-xr-x root/root 0 2019-11-11 10:46 ./usr/lib/R/site-library/ShortRead/Meta/ -rw-r--r-- root/root 5606 2019-11-11 10:46 ./usr/lib/R/site-library/ShortRead/Meta/Rd.rds 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+------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build-Space: 21936 Build-Time: 67 Distribution: focal-proposed Host Architecture: ppc64el Install-Time: 25 Job: r-bioc-shortread_1.44.0-1.dsc Machine Architecture: ppc64el Package: r-bioc-shortread Package-Time: 93 Source-Version: 1.44.0-1 Space: 21936 Status: successful Version: 1.44.0-1 -------------------------------------------------------------------------------- Finished at 20191114-2128 Build needed 00:01:33, 21936k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=ppc64el PACKAGEBUILD-18089033 Scanning for processes to kill in build PACKAGEBUILD-18089033