https://launchpad.net/ubuntu/+source/r-bioc-tfbstools/1.32.0+dfsg-1/+build/22454043 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-062 4.15.0-162-generic #170-Ubuntu SMP Mon Oct 18 11:28:54 UTC 2021 aarch64 Buildd toolchain package versions: launchpad-buildd_204~508~ubuntu18.04.1 python3-lpbuildd_204~508~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.9 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 26 Nov 11:18:38 ntpdate[1674]: adjust time server 10.211.37.1 offset 0.008883 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=jammy --arch=armhf PACKAGEBUILD-22454043 --image-type chroot /home/buildd/filecache-default/c698bf6badd89264039f6cdfcd7c983f87611a3e Creating target for build PACKAGEBUILD-22454043 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=jammy --arch=armhf PACKAGEBUILD-22454043 Starting target for build PACKAGEBUILD-22454043 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=jammy --arch=armhf PACKAGEBUILD-22454043 'deb http://ftpmaster.internal/ubuntu jammy main universe' 'deb http://ftpmaster.internal/ubuntu jammy-security main universe' 'deb http://ftpmaster.internal/ubuntu jammy-updates main universe' 'deb http://ftpmaster.internal/ubuntu jammy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-22454043 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=jammy --arch=armhf PACKAGEBUILD-22454043 Updating target for build PACKAGEBUILD-22454043 Get:1 http://ftpmaster.internal/ubuntu jammy InRelease [270 kB] Get:2 http://ftpmaster.internal/ubuntu jammy-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed InRelease [121 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main armhf Packages [1351 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main Translation-en [511 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/universe armhf Packages [12.8 MB] Get:8 http://ftpmaster.internal/ubuntu jammy/universe Translation-en [5556 kB] Get:9 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf Packages [168 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main Translation-en [61.0 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/universe armhf Packages [873 kB] Get:12 http://ftpmaster.internal/ubuntu jammy-proposed/universe Translation-en [434 kB] Fetched 22.4 MB in 5s (4569 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libsepol1 Use 'sudo apt autoremove' to remove it. The following packages will be REMOVED: libsemanage1* The following NEW packages will be installed: libsemanage2 libsepol2 libssl3 The following packages will be upgraded: apt base-files binutils binutils-arm-linux-gnueabihf binutils-common bsdutils ca-certificates cpp-11 dash debconf debianutils e2fsprogs g++-11 gcc-11 gcc-11-base gpg gpg-agent gpgconf gpgv grep libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libattr1 libbinutils libblkid1 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libext2fs2 libgcc-11-dev libgcc-s1 libgcrypt20 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libidn2-0 libip4tc2 libisl23 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 libmount1 libmpc3 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libseccomp2 libselinux1 libsemanage-common libsmartcols1 libsqlite3-0 libss2 libstdc++-11-dev libstdc++6 libtasn1-6 libtinfo6 libubsan1 libuuid1 libzstd1 linux-libc-dev lockfile-progs login logsave make mount ncurses-base ncurses-bin openssl passwd pkgbinarymangler sensible-utils tzdata usrmerge util-linux 88 upgraded, 3 newly installed, 1 to remove and 0 not upgraded. Need to get 61.1 MB of archives. After this operation, 338 MB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu jammy/main armhf debconf all 1.5.79 [126 kB] Get:2 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libpam0g armhf 1.4.0-10ubuntu1 [56.0 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libcrypt-dev armhf 1:4.4.26-1 [122 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libcrypt1 armhf 1:4.4.26-1 [94.1 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main armhf base-files armhf 12ubuntu2 [63.0 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main armhf bsdutils armhf 1:2.37.2-4ubuntu1 [86.9 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/main armhf debianutils armhf 5.5-1 [76.9 kB] Get:8 http://ftpmaster.internal/ubuntu jammy/main armhf dash armhf 0.5.11+git20210903+057cd650a4ed-3 [83.8 kB] Get:9 http://ftpmaster.internal/ubuntu jammy/main armhf grep armhf 3.7-1 [150 kB] Get:10 http://ftpmaster.internal/ubuntu jammy/main armhf login armhf 1:4.8.1-1ubuntu10 [186 kB] Get:11 http://ftpmaster.internal/ubuntu jammy/main armhf libncurses6 armhf 6.3-1 [87.5 kB] Get:12 http://ftpmaster.internal/ubuntu jammy/main armhf libncursesw6 armhf 6.3-1 [118 kB] Get:13 http://ftpmaster.internal/ubuntu jammy/main armhf libtinfo6 armhf 6.3-1 [88.2 kB] Get:14 http://ftpmaster.internal/ubuntu jammy/main armhf ncurses-bin armhf 6.3-1 [175 kB] Get:15 http://ftpmaster.internal/ubuntu jammy/main armhf libblkid1 armhf 2.37.2-4ubuntu1 [136 kB] Get:16 http://ftpmaster.internal/ubuntu jammy/main armhf libpcre2-8-0 armhf 10.39-3 [190 kB] Get:17 http://ftpmaster.internal/ubuntu jammy/main armhf libselinux1 armhf 3.3-1 [66.9 kB] Get:18 http://ftpmaster.internal/ubuntu jammy/main armhf libmount1 armhf 2.37.2-4ubuntu1 [151 kB] Get:19 http://ftpmaster.internal/ubuntu jammy/main armhf util-linux armhf 2.37.2-4ubuntu1 [1130 kB] Get:20 http://ftpmaster.internal/ubuntu jammy/main armhf ncurses-base all 6.3-1 [19.9 kB] Get:21 http://ftpmaster.internal/ubuntu jammy/main armhf libgpg-error0 armhf 1.42-3 [60.1 kB] Get:22 http://ftpmaster.internal/ubuntu jammy/main armhf libgcrypt20 armhf 1.9.4-3ubuntu2 [438 kB] Get:23 http://ftpmaster.internal/ubuntu jammy/main armhf libcc1-0 armhf 11.2.0-12ubuntu1 [45.8 kB] Get:24 http://ftpmaster.internal/ubuntu jammy/main armhf gcc-11-base armhf 11.2.0-12ubuntu1 [20.7 kB] Get:25 http://ftpmaster.internal/ubuntu jammy/main armhf libgcc-s1 armhf 11.2.0-12ubuntu1 [42.6 kB] Get:26 http://ftpmaster.internal/ubuntu jammy/main armhf libgomp1 armhf 11.2.0-12ubuntu1 [101 kB] Get:27 http://ftpmaster.internal/ubuntu jammy/main armhf libatomic1 armhf 11.2.0-12ubuntu1 [7624 B] Get:28 http://ftpmaster.internal/ubuntu jammy/main armhf libasan6 armhf 11.2.0-12ubuntu1 [2242 kB] Get:29 http://ftpmaster.internal/ubuntu jammy/main armhf libubsan1 armhf 11.2.0-12ubuntu1 [894 kB] Get:30 http://ftpmaster.internal/ubuntu jammy/main armhf g++-11 armhf 11.2.0-12ubuntu1 [9005 kB] Get:31 http://ftpmaster.internal/ubuntu jammy/main armhf libstdc++-11-dev armhf 11.2.0-12ubuntu1 [2180 kB] Get:32 http://ftpmaster.internal/ubuntu jammy/main armhf libgcc-11-dev armhf 11.2.0-12ubuntu1 [839 kB] Get:33 http://ftpmaster.internal/ubuntu jammy/main armhf gcc-11 armhf 11.2.0-12ubuntu1 [15.8 MB] Get:34 http://ftpmaster.internal/ubuntu jammy/main armhf cpp-11 armhf 11.2.0-12ubuntu1 [7833 kB] Get:35 http://ftpmaster.internal/ubuntu jammy/main armhf libstdc++6 armhf 11.2.0-12ubuntu1 [573 kB] Get:36 http://ftpmaster.internal/ubuntu jammy/main armhf libisl23 armhf 0.24-2 [581 kB] Get:37 http://ftpmaster.internal/ubuntu jammy/main armhf libmpc3 armhf 1.2.1-1 [39.5 kB] Get:38 http://ftpmaster.internal/ubuntu jammy/main armhf libzstd1 armhf 1.4.8+dfsg-3 [285 kB] Get:39 http://ftpmaster.internal/ubuntu jammy/main armhf libctf0 armhf 2.37-10ubuntu1 [93.7 kB] Get:40 http://ftpmaster.internal/ubuntu jammy/main armhf libctf-nobfd0 armhf 2.37-10ubuntu1 [93.8 kB] Get:41 http://ftpmaster.internal/ubuntu jammy/main armhf libbinutils armhf 2.37-10ubuntu1 [492 kB] Get:42 http://ftpmaster.internal/ubuntu jammy/main armhf binutils-common armhf 2.37-10ubuntu1 [213 kB] Get:43 http://ftpmaster.internal/ubuntu jammy/main armhf binutils armhf 2.37-10ubuntu1 [3174 B] Get:44 http://ftpmaster.internal/ubuntu jammy/main armhf binutils-arm-linux-gnueabihf armhf 2.37-10ubuntu1 [3057 kB] Get:45 http://ftpmaster.internal/ubuntu jammy/main armhf libapt-pkg6.0 armhf 2.3.13 [899 kB] Get:46 http://ftpmaster.internal/ubuntu jammy/main armhf gpgv armhf 2.2.27-2ubuntu1 [185 kB] Get:47 http://ftpmaster.internal/ubuntu jammy/main armhf libidn2-0 armhf 2.3.2-2 [67.8 kB] Get:48 http://ftpmaster.internal/ubuntu jammy/main armhf libp11-kit0 armhf 0.24.0-5 [218 kB] Get:49 http://ftpmaster.internal/ubuntu jammy/main armhf libtasn1-6 armhf 4.18.0-4 [36.3 kB] Get:50 http://ftpmaster.internal/ubuntu jammy/main armhf libgnutls30 armhf 3.7.2-2ubuntu1 [923 kB] Get:51 http://ftpmaster.internal/ubuntu jammy/main armhf libseccomp2 armhf 2.5.2-2ubuntu2 [47.7 kB] Get:52 http://ftpmaster.internal/ubuntu jammy/main armhf apt armhf 2.3.13 [1378 kB] Get:53 http://ftpmaster.internal/ubuntu jammy/main armhf libsepol2 armhf 3.3-1 [263 kB] Get:54 http://ftpmaster.internal/ubuntu jammy/main armhf libsemanage-common all 3.3-1 [10.1 kB] Get:55 http://ftpmaster.internal/ubuntu jammy/main armhf libsemanage2 armhf 3.3-1 [84.0 kB] Get:56 http://ftpmaster.internal/ubuntu jammy/main armhf passwd armhf 1:4.8.1-1ubuntu10 [729 kB] Get:57 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libpam-modules-bin armhf 1.4.0-10ubuntu1 [35.6 kB] Get:58 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libpam-modules armhf 1.4.0-10ubuntu1 [263 kB] Get:59 http://ftpmaster.internal/ubuntu jammy/main armhf logsave armhf 1.46.4-1ubuntu1 [10.3 kB] Get:60 http://ftpmaster.internal/ubuntu jammy/main armhf libext2fs2 armhf 1.46.4-1ubuntu1 [192 kB] Get:61 http://ftpmaster.internal/ubuntu jammy/main armhf e2fsprogs armhf 1.46.4-1ubuntu1 [565 kB] Get:62 http://ftpmaster.internal/ubuntu jammy/main armhf mount armhf 2.37.2-4ubuntu1 [125 kB] Get:63 http://ftpmaster.internal/ubuntu jammy/main armhf libattr1 armhf 1:2.5.1-1 [12.2 kB] Get:64 http://ftpmaster.internal/ubuntu jammy/main armhf libcom-err2 armhf 1.46.4-1ubuntu1 [9224 B] Get:65 http://ftpmaster.internal/ubuntu jammy/main armhf libk5crypto3 armhf 1.18.3-7 [83.1 kB] Get:66 http://ftpmaster.internal/ubuntu jammy/main armhf libkrb5support0 armhf 1.18.3-7 [30.3 kB] Get:67 http://ftpmaster.internal/ubuntu jammy/main armhf libkrb5-3 armhf 1.18.3-7 [330 kB] Get:68 http://ftpmaster.internal/ubuntu jammy/main armhf libgssapi-krb5-2 armhf 1.18.3-7 [120 kB] Get:69 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libpam-runtime all 1.4.0-10ubuntu1 [40.2 kB] Get:70 http://ftpmaster.internal/ubuntu jammy/main armhf libsmartcols1 armhf 2.37.2-4ubuntu1 [93.7 kB] Get:71 http://ftpmaster.internal/ubuntu jammy/main armhf libuuid1 armhf 2.37.2-4ubuntu1 [23.3 kB] Get:72 http://ftpmaster.internal/ubuntu jammy/main armhf libss2 armhf 1.46.4-1ubuntu1 [10.1 kB] Get:73 http://ftpmaster.internal/ubuntu jammy/main armhf sensible-utils all 0.0.17 [20.1 kB] Get:74 http://ftpmaster.internal/ubuntu jammy/main armhf usrmerge all 25ubuntu2 [54.7 kB] Get:75 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libssl3 armhf 3.0.0-1ubuntu1 [1575 kB] Get:76 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf openssl armhf 3.0.0-1ubuntu1 [1148 kB] Get:77 http://ftpmaster.internal/ubuntu jammy/main armhf ca-certificates all 20211016 [148 kB] Get:78 http://ftpmaster.internal/ubuntu jammy/main armhf libapparmor1 armhf 3.0.3-0ubuntu3 [32.2 kB] Get:79 http://ftpmaster.internal/ubuntu jammy/main armhf libip4tc2 armhf 1.8.7-1ubuntu4 [17.7 kB] Get:80 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libkmod2 armhf 28-1ubuntu5 [40.9 kB] Get:81 http://ftpmaster.internal/ubuntu jammy/main armhf libsqlite3-0 armhf 3.36.0-2 [571 kB] Get:82 http://ftpmaster.internal/ubuntu jammy/main armhf tzdata all 2021e-1ubuntu1 [343 kB] Get:83 http://ftpmaster.internal/ubuntu jammy/main armhf libgdbm6 armhf 1.22-1 [31.0 kB] Get:84 http://ftpmaster.internal/ubuntu jammy/main armhf gpg armhf 2.2.27-2ubuntu1 [483 kB] Get:85 http://ftpmaster.internal/ubuntu jammy/main armhf gpgconf armhf 2.2.27-2ubuntu1 [114 kB] Get:86 http://ftpmaster.internal/ubuntu jammy/main armhf gpg-agent armhf 2.2.27-2ubuntu1 [227 kB] Get:87 http://ftpmaster.internal/ubuntu jammy/main armhf libgdbm-compat4 armhf 1.22-1 [6076 B] Get:88 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf linux-libc-dev armhf 5.15.0-12.12 [1228 kB] Get:89 http://ftpmaster.internal/ubuntu jammy/main armhf lockfile-progs armhf 0.1.19 [9508 B] Get:90 http://ftpmaster.internal/ubuntu jammy/main armhf make armhf 4.3-4ubuntu2 [162 kB] Get:91 http://ftpmaster.internal/ubuntu jammy/main armhf pkgbinarymangler all 149 [32.4 kB] debconf: delaying package configuration, since apt-utils is 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Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-22454043 armhf jammy-proposed -c chroot:build-PACKAGEBUILD-22454043 --arch=armhf --dist=jammy-proposed --nolog r-bioc-tfbstools_1.32.0+dfsg-1.dsc Initiating build PACKAGEBUILD-22454043 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-162-generic #170-Ubuntu SMP Mon Oct 18 11:28:54 UTC 2021 armv7l sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-arm64-062.buildd +==============================================================================+ | r-bioc-tfbstools 1.32.0+dfsg-1 (armhf) Fri, 26 Nov 2021 11:19:26 +0000 | +==============================================================================+ Package: r-bioc-tfbstools Version: 1.32.0+dfsg-1 Source Version: 1.32.0+dfsg-1 Distribution: jammy-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-22454043/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-bioc-tfbstools_1.32.0+dfsg-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/r-bioc-tfbstools-hWmFnu/r-bioc-tfbstools-1.32.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-tfbstools-hWmFnu' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-B1cWqp/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-B1cWqp/apt_archive ./ InRelease Get:2 copy:/<>/resolver-B1cWqp/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-B1cWqp/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-B1cWqp/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-B1cWqp/apt_archive ./ Packages [431 B] Fetched 1737 B in 0s (52.6 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libsepol1 Use 'apt autoremove' to remove it. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 652 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-B1cWqp/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [652 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 652 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13160 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biobase, r-bioc-biostrings, r-bioc-biocgenerics, r-bioc-biocparallel, r-bioc-bsgenome, r-cran-catools, r-bioc-cner, r-bioc-dirichletmultinomial, r-bioc-genomeinfodb, r-bioc-genomicranges, r-cran-gtools, r-bioc-iranges, r-cran-dbi, r-cran-rsqlite, r-bioc-rtracklayer, r-bioc-seqlogo, r-bioc-s4vectors, r-cran-tfmpvalue, r-cran-xml, r-bioc-xvector Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biobase, r-bioc-biostrings, r-bioc-biocgenerics, r-bioc-biocparallel, r-bioc-bsgenome, r-cran-catools, r-bioc-cner, r-bioc-dirichletmultinomial, r-bioc-genomeinfodb, r-bioc-genomicranges, r-cran-gtools, r-bioc-iranges, r-cran-dbi, r-cran-rsqlite, r-bioc-rtracklayer, r-bioc-seqlogo, r-bioc-s4vectors, r-cran-tfmpvalue, r-cran-xml, r-bioc-xvector dpkg-deb: building package 'sbuild-build-depends-r-bioc-tfbstools-dummy' in '/<>/resolver-B1cWqp/apt_archive/sbuild-build-depends-r-bioc-tfbstools-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-tfbstools-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-B1cWqp/apt_archive ./ InRelease Get:2 copy:/<>/resolver-B1cWqp/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-B1cWqp/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-B1cWqp/apt_archive ./ Sources [644 B] Get:5 copy:/<>/resolver-B1cWqp/apt_archive ./ Packages [725 B] Fetched 2332 B in 0s (80.6 kB/s) Reading package lists... Reading package lists... Install r-bioc-tfbstools build dependencies (apt-based resolver) ---------------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libsepol1 Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils dctrl-tools debhelper debugedit dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-11 groff-base icu-devtools intltool-debian libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdw1 libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-11-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgsl25 libgslcblas0 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu67 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libldap-2.5-0 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev librtmp1 libsasl2-2 libsasl2-modules-db libscalar-list-utils-perl libsigsegv2 libsm6 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp6 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db pkg-config po-debconf r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biostrings r-bioc-bsgenome r-bioc-cner r-bioc-delayedarray r-bioc-dirichletmultinomial r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-go.db r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors r-bioc-seqlogo r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-cachem r-cran-catools r-cran-cli r-cran-clipr r-cran-colorspace r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-digest r-cran-ellipsis r-cran-fansi r-cran-farver r-cran-fastmap r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-gtools r-cran-hms r-cran-httr r-cran-isoband r-cran-jsonlite r-cran-labeling r-cran-lambda.r r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-plyr r-cran-png r-cran-powerlaw r-cran-pracma r-cran-prettyunits r-cran-progress r-cran-purrr r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-readr r-cran-reshape2 r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rsqlite r-cran-scales r-cran-snow r-cran-stringi r-cran-stringr r-cran-sys r-cran-tfmpvalue r-cran-tibble r-cran-tidyselect r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-vroom r-cran-withr r-cran-xml r-cran-xtable r-cran-yaml ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc gfortran-11-doc libcoarrays-dev groff liblapack-doc libboost-doc libboost1.74-doc libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html icu-doc liblzma-doc ncurses-doc libscalar-number-perl readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk libbusiness-isbn-perl libwww-perl libcurl4-gnutls-dev m4-doc apparmor less www-browser libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo r-bioc-genefilter r-bioc-org.hs.eg.db r-cran-runit r-bioc-graph r-bioc-biocstyle r-cran-knitr r-bioc-all r-bioc-affy r-bioc-deseq2 r-cran-testthat r-cran-rmarkdown r-cran-foreach r-cran-bbmisc r-bioc-variantannotation r-bioc-shortread r-cran-codetools r-cran-data.table r-bioc-genomicfeatures r-cran-biocmanager r-bioc-gviz r-bioc-hdf5array r-bioc-delayedmatrixstats r-bioc-edger r-bioc-annotationhub r-bioc-dexseq r-cran-markdown r-bioc-sparsematrixstats r-bioc-limma r-bioc-rhdf5 r-cran-roxygen2 r-cran-covr r-cran-rpart r-cran-callr r-cran-htmltools r-cran-htmlwidgets r-cran-processx r-cran-ps r-cran-rstudioapi r-cran-shiny r-cran-whoami r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-dplyr r-cran-jpeg r-cran-viridis r-cran-bench r-cran-desc r-cran-rmysql r-cran-unitizer r-cran-forcats r-cran-waldo r-cran-lubridate r-cran-httpuv r-cran-xml2 r-cran-magick r-cran-sf r-cran-tidyverse r-cran-getopt r-cran-base64enc r-cran-formattable r-cran-survival r-cran-units r-cran-doparallel r-cran-iterators r-cran-itertools r-cran-quadprog r-cran-inline r-cran-gert r-cran-gh r-cran-rvest r-cran-dichromat r-cran-rmpi r-cran-rsprng r-cran-rlecuyer r-cran-brio r-cran-evaluate r-cran-pkgbuild r-cran-pkgload r-cran-tidyr r-cran-zeallot r-cran-plm r-cran-zoo Recommended packages: devscripts cme git-buildpackage curl | wget | lynx bzip2-doc libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libclone-perl libldap-common libdevel-partialdump-perl libpng-tools publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl r-recommended r-doc-html r-cran-runit r-cran-batchjobs r-cran-doparallel r-cran-batchtools r-cran-rmpi r-bioc-biovizbase r-cran-testthat r-cran-mockery r-cran-decor r-cran-knitr r-cran-brio r-cran-httpuv r-cran-webutils r-cran-testit r-cran-codetools r-cran-survival r-cran-covr r-cran-ragg r-cran-dplyr r-cran-hexbin r-cran-hmisc r-cran-interp r-cran-mapproj r-cran-maps r-cran-maptools r-cran-multcomp r-cran-quantreg r-cran-rmarkdown r-cran-rpart r-cran-sf r-cran-svglite r-cran-vdiffr r-cran-xml2 r-cran-sp r-cran-sodium r-cran-lubridate r-cran-domc r-cran-abind r-cran-dbitest r-cran-htmltools r-cran-htmlwidgets r-cran-data.table r-cran-mockr r-cran-generics r-cran-waldo libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils dctrl-tools debhelper debugedit dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-11 groff-base icu-devtools intltool-debian libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdw1 libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-11-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgsl25 libgslcblas0 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu67 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libldap-2.5-0 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev librtmp1 libsasl2-2 libsasl2-modules-db libscalar-list-utils-perl libsigsegv2 libsm6 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp6 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db pkg-config po-debconf r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biostrings r-bioc-bsgenome r-bioc-cner r-bioc-delayedarray r-bioc-dirichletmultinomial r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges r-bioc-go.db r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors r-bioc-seqlogo r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-cachem r-cran-catools r-cran-cli r-cran-clipr r-cran-colorspace r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-digest r-cran-ellipsis r-cran-fansi r-cran-farver r-cran-fastmap r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-gtools r-cran-hms r-cran-httr r-cran-isoband r-cran-jsonlite r-cran-labeling r-cran-lambda.r r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-plyr r-cran-png r-cran-powerlaw r-cran-pracma r-cran-prettyunits r-cran-progress r-cran-purrr r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-readr r-cran-reshape2 r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rsqlite r-cran-scales r-cran-snow r-cran-stringi r-cran-stringr r-cran-sys r-cran-tfmpvalue r-cran-tibble r-cran-tidyselect r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-vroom r-cran-withr r-cran-xml r-cran-xtable r-cran-yaml sbuild-build-depends-r-bioc-tfbstools-dummy ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 289 newly installed, 0 to remove and 0 not upgraded. Need to get 244 MB of archives. After this operation, 655 MB of additional disk space will be used. 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[6628 B] Get:22 http://ftpmaster.internal/ubuntu jammy/main armhf libxdmcp6 armhf 1:1.1.3-0ubuntu4 [9552 B] Get:23 http://ftpmaster.internal/ubuntu jammy/main armhf libxcb1 armhf 1.14-3ubuntu2 [46.2 kB] Get:24 http://ftpmaster.internal/ubuntu jammy/main armhf libx11-data all 2:1.7.2-2 [123 kB] Get:25 http://ftpmaster.internal/ubuntu jammy/main armhf libx11-6 armhf 2:1.7.2-2 [601 kB] Get:26 http://ftpmaster.internal/ubuntu jammy/main armhf libxext6 armhf 2:1.3.4-1 [26.4 kB] Get:27 http://ftpmaster.internal/ubuntu jammy/main armhf libxmuu1 armhf 2:1.1.3-0ubuntu2 [9270 B] Get:28 http://ftpmaster.internal/ubuntu jammy/main armhf xauth armhf 1:1.1-1build1 [23.9 kB] Get:29 http://ftpmaster.internal/ubuntu jammy/main armhf libsigsegv2 armhf 2.13-1ubuntu2 [13.7 kB] Get:30 http://ftpmaster.internal/ubuntu jammy/main armhf m4 armhf 1.4.18-5ubuntu1 [192 kB] Get:31 http://ftpmaster.internal/ubuntu jammy/main armhf autoconf all 2.71-2 [338 kB] Get:32 http://ftpmaster.internal/ubuntu jammy/main 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dh-strip-nondeterminism all 1.12.1-1 [5200 B] Get:43 http://ftpmaster.internal/ubuntu jammy/main armhf libdw1 armhf 0.186-1 [228 kB] Get:44 http://ftpmaster.internal/ubuntu jammy/main armhf debugedit armhf 1:5.0-3 [43.2 kB] Get:45 http://ftpmaster.internal/ubuntu jammy/main armhf dwz armhf 0.14-1build1 [99.2 kB] Get:46 http://ftpmaster.internal/ubuntu jammy/main armhf gettext armhf 0.21-4ubuntu3 [755 kB] Get:47 http://ftpmaster.internal/ubuntu jammy/main armhf intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:48 http://ftpmaster.internal/ubuntu jammy/main armhf po-debconf all 1.0.21+nmu1 [233 kB] Get:49 http://ftpmaster.internal/ubuntu jammy/main armhf debhelper all 13.5.2ubuntu1 [926 kB] Get:50 http://ftpmaster.internal/ubuntu jammy/main armhf zip armhf 3.0-12build1 [166 kB] Get:51 http://ftpmaster.internal/ubuntu jammy/main armhf unzip armhf 6.0-26ubuntu2 [162 kB] Get:52 http://ftpmaster.internal/ubuntu jammy/main armhf libpaper1 armhf 1.1.28build1 [12.9 kB] Get:53 http://ftpmaster.internal/ubuntu jammy/main armhf libpaper-utils armhf 1.1.28build1 [8238 B] Get:54 http://ftpmaster.internal/ubuntu jammy/main armhf xdg-utils all 1.1.3-4.1ubuntu1 [62.2 kB] Get:55 http://ftpmaster.internal/ubuntu jammy/main armhf libblas3 armhf 3.9.0-3ubuntu3 [113 kB] Get:56 http://ftpmaster.internal/ubuntu jammy/main armhf libbrotli1 armhf 1.0.9-2build4 [306 kB] Get:57 http://ftpmaster.internal/ubuntu jammy/main armhf libfreetype6 armhf 2.11.0+dfsg-1 [323 kB] Get:58 http://ftpmaster.internal/ubuntu jammy/main armhf fonts-dejavu-core all 2.37-2build1 [1041 kB] Get:59 http://ftpmaster.internal/ubuntu jammy/main armhf fontconfig-config all 2.13.1-4.2ubuntu4 [29.1 kB] Get:60 http://ftpmaster.internal/ubuntu jammy/main armhf libfontconfig1 armhf 2.13.1-4.2ubuntu4 [109 kB] Get:61 http://ftpmaster.internal/ubuntu jammy/main armhf libpixman-1-0 armhf 0.40.0-1build3 [177 kB] Get:62 http://ftpmaster.internal/ubuntu jammy/main armhf libxcb-render0 armhf 1.14-3ubuntu2 [15.3 kB] Get:63 http://ftpmaster.internal/ubuntu jammy/main armhf libxcb-shm0 armhf 1.14-3ubuntu2 [5818 B] Get:64 http://ftpmaster.internal/ubuntu jammy/main armhf libxrender1 armhf 1:0.9.10-1build3 [16.3 kB] Get:65 http://ftpmaster.internal/ubuntu jammy/main armhf libcairo2 armhf 1.16.0-5ubuntu2 [549 kB] Get:66 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libsasl2-modules-db armhf 2.1.27+dfsg2-2build1 [19.1 kB] Get:67 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libsasl2-2 armhf 2.1.27+dfsg2-2build1 [50.7 kB] Get:68 http://ftpmaster.internal/ubuntu jammy/main armhf libldap-2.5-0 armhf 2.5.6+dfsg-1~exp1ubuntu1 [162 kB] Get:69 http://ftpmaster.internal/ubuntu jammy/main armhf libnghttp2-14 armhf 1.43.0-1build1 [70.0 kB] Get:70 http://ftpmaster.internal/ubuntu jammy/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2build3 [53.0 kB] Get:71 http://ftpmaster.internal/ubuntu jammy/main armhf libssh-4 armhf 0.9.6-1 [163 kB] Get:72 http://ftpmaster.internal/ubuntu jammy/main armhf libcurl4 armhf 7.74.0-1.3ubuntu2 [238 kB] Get:73 http://ftpmaster.internal/ubuntu jammy/main armhf libjpeg-turbo8 armhf 2.1.1-0ubuntu1 [116 kB] Get:74 http://ftpmaster.internal/ubuntu jammy/main armhf libjpeg8 armhf 8c-2ubuntu8 [2202 B] Get:75 http://ftpmaster.internal/ubuntu jammy/main armhf libgfortran5 armhf 11.2.0-12ubuntu1 [287 kB] Get:76 http://ftpmaster.internal/ubuntu jammy/main armhf liblapack3 armhf 3.9.0-3ubuntu3 [1891 kB] Get:77 http://ftpmaster.internal/ubuntu jammy/main armhf fontconfig armhf 2.13.1-4.2ubuntu4 [182 kB] Get:78 http://ftpmaster.internal/ubuntu jammy/main armhf libgraphite2-3 armhf 1.3.14-1build1 [65.2 kB] Get:79 http://ftpmaster.internal/ubuntu jammy/main armhf libharfbuzz0b armhf 2.7.4-1ubuntu2 [335 kB] Get:80 http://ftpmaster.internal/ubuntu jammy/main armhf libthai-data all 0.1.28-4.1 [159 kB] Get:81 http://ftpmaster.internal/ubuntu jammy/main armhf libdatrie1 armhf 0.2.13-1ubuntu3 [16.4 kB] Get:82 http://ftpmaster.internal/ubuntu jammy/main armhf libthai0 armhf 0.1.28-4.1 [15.8 kB] Get:83 http://ftpmaster.internal/ubuntu jammy/main armhf libpango-1.0-0 armhf 1.48.10+ds1-1 [176 kB] Get:84 http://ftpmaster.internal/ubuntu jammy/main armhf libpangoft2-1.0-0 armhf 1.48.10+ds1-1 [44.4 kB] Get:85 http://ftpmaster.internal/ubuntu jammy/main armhf libpangocairo-1.0-0 armhf 1.48.10+ds1-1 [33.0 kB] Get:86 http://ftpmaster.internal/ubuntu jammy/main armhf libtcl8.6 armhf 8.6.12+dfsg-1 [912 kB] Get:87 http://ftpmaster.internal/ubuntu jammy/main armhf libdeflate0 armhf 1.8-1ubuntu1 [46.1 kB] Get:88 http://ftpmaster.internal/ubuntu jammy/main armhf libjbig0 armhf 2.1-3.1build2 [25.1 kB] Get:89 http://ftpmaster.internal/ubuntu jammy/main armhf libwebp6 armhf 0.6.1-2.1build1 [163 kB] Get:90 http://ftpmaster.internal/ubuntu jammy/main armhf libtiff5 armhf 4.3.0-2 [165 kB] Get:91 http://ftpmaster.internal/ubuntu jammy/main armhf libxft2 armhf 2.3.3-0ubuntu4 [34.8 kB] Get:92 http://ftpmaster.internal/ubuntu jammy/main armhf x11-common all 1:7.7+23ubuntu1 [23.5 kB] Get:93 http://ftpmaster.internal/ubuntu jammy/main armhf libxss1 armhf 1:1.2.3-1build1 [7662 B] Get:94 http://ftpmaster.internal/ubuntu jammy/main armhf libtk8.6 armhf 8.6.12-1 [689 kB] Get:95 http://ftpmaster.internal/ubuntu jammy/main armhf libice6 armhf 2:1.0.10-1build1 [36.4 kB] Get:96 http://ftpmaster.internal/ubuntu jammy/main armhf libsm6 armhf 2:1.2.3-1build1 [15.3 kB] Get:97 http://ftpmaster.internal/ubuntu jammy/main armhf libxt6 armhf 1:1.2.0-1build1 [148 kB] Get:98 http://ftpmaster.internal/ubuntu jammy/universe armhf r-base-core armhf 4.1.2-1ubuntu1 [25.6 MB] Get:99 http://ftpmaster.internal/ubuntu jammy/main armhf libgfortran-11-dev armhf 11.2.0-12ubuntu1 [342 kB] Get:100 http://ftpmaster.internal/ubuntu jammy/main armhf gfortran-11 armhf 11.2.0-12ubuntu1 [8395 kB] Get:101 http://ftpmaster.internal/ubuntu jammy/main armhf gfortran armhf 4:11.2.0-1ubuntu1 [1172 B] Get:102 http://ftpmaster.internal/ubuntu jammy/main armhf libblas-dev armhf 3.9.0-3ubuntu3 [120 kB] Get:103 http://ftpmaster.internal/ubuntu jammy/main armhf liblapack-dev armhf 3.9.0-3ubuntu3 [1960 kB] Get:104 http://ftpmaster.internal/ubuntu jammy/main armhf libncurses-dev armhf 6.3-1 [342 kB] Get:105 http://ftpmaster.internal/ubuntu jammy/main armhf libncurses5-dev armhf 6.3-1 [780 B] Get:106 http://ftpmaster.internal/ubuntu jammy/main armhf libreadline-dev armhf 8.1-2build1 [151 kB] Get:107 http://ftpmaster.internal/ubuntu jammy/main armhf libjpeg-turbo8-dev armhf 2.1.1-0ubuntu1 [231 kB] Get:108 http://ftpmaster.internal/ubuntu jammy/main armhf libjpeg8-dev armhf 8c-2ubuntu8 [1554 B] Get:109 http://ftpmaster.internal/ubuntu jammy/main armhf libjpeg-dev armhf 8c-2ubuntu8 [1554 B] Get:110 http://ftpmaster.internal/ubuntu jammy/main armhf libpcre2-16-0 armhf 10.39-3 [173 kB] Get:111 http://ftpmaster.internal/ubuntu jammy/main armhf libpcre2-32-0 armhf 10.39-3 [163 kB] Get:112 http://ftpmaster.internal/ubuntu jammy/main armhf libpcre2-posix3 armhf 10.39-3 [5544 B] Get:113 http://ftpmaster.internal/ubuntu jammy/main armhf libpcre2-dev armhf 10.39-3 [645 kB] Get:114 http://ftpmaster.internal/ubuntu jammy/main armhf libpcre16-3 armhf 2:8.39-13build4 [143 kB] Get:115 http://ftpmaster.internal/ubuntu jammy/main armhf libpcre32-3 armhf 2:8.39-13build4 [135 kB] Get:116 http://ftpmaster.internal/ubuntu jammy/main armhf libpcrecpp0v5 armhf 2:8.39-13build4 [14.0 kB] Get:117 http://ftpmaster.internal/ubuntu jammy/main armhf libpcre3-dev armhf 2:8.39-13build4 [514 kB] Get:118 http://ftpmaster.internal/ubuntu jammy/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2ubuntu7 [157 kB] Get:119 http://ftpmaster.internal/ubuntu jammy/main armhf libpng-dev armhf 1.6.37-3build4 [176 kB] Get:120 http://ftpmaster.internal/ubuntu jammy/main armhf libbz2-dev armhf 1.0.8-4ubuntu4 [29.8 kB] Get:121 http://ftpmaster.internal/ubuntu jammy/main armhf liblzma-dev armhf 5.2.5-2build1 [149 kB] Get:122 http://ftpmaster.internal/ubuntu jammy/main armhf icu-devtools armhf 67.1-7ubuntu1 [183 kB] Get:123 http://ftpmaster.internal/ubuntu jammy/main armhf libicu-dev armhf 67.1-7ubuntu1 [10.8 MB] Get:124 http://ftpmaster.internal/ubuntu jammy/main armhf pkg-config armhf 0.29.2-1ubuntu2 [46.0 kB] Get:125 http://ftpmaster.internal/ubuntu jammy/universe armhf r-base-dev all 4.1.2-1ubuntu1 [4306 B] Get:126 http://ftpmaster.internal/ubuntu jammy/main armhf libfile-which-perl all 1.23-1 [13.8 kB] Get:127 http://ftpmaster.internal/ubuntu jammy/universe armhf libswitch-perl all 2.17-2.1 [18.3 kB] Get:128 http://ftpmaster.internal/ubuntu jammy/main armhf libencode-locale-perl all 1.05-1.1 [11.8 kB] Get:129 http://ftpmaster.internal/ubuntu jammy/main armhf libtimedate-perl all 2.3300-2 [34.0 kB] Get:130 http://ftpmaster.internal/ubuntu jammy/main armhf libhttp-date-perl all 6.05-1 [9920 B] Get:131 http://ftpmaster.internal/ubuntu jammy/main armhf libio-html-perl all 1.004-2 [15.4 kB] Get:132 http://ftpmaster.internal/ubuntu jammy/main armhf liblwp-mediatypes-perl all 6.04-1 [19.5 kB] Get:133 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf liburi-perl all 5.10-1 [78.8 kB] Get:134 http://ftpmaster.internal/ubuntu jammy-proposed/main armhf libhttp-message-perl all 6.35-1 [77.0 kB] Get:135 http://ftpmaster.internal/ubuntu jammy/main armhf libparams-util-perl armhf 1.102-1build2 [21.5 kB] Get:136 http://ftpmaster.internal/ubuntu jammy/main armhf libsub-install-perl all 0.928-1.1 [9972 B] Get:137 http://ftpmaster.internal/ubuntu jammy/main armhf libdata-optlist-perl all 0.112-1 [11.0 kB] Get:138 http://ftpmaster.internal/ubuntu jammy/main armhf libb-hooks-op-check-perl armhf 0.22-1build4 [10.2 kB] Get:139 http://ftpmaster.internal/ubuntu jammy/main armhf libdynaloader-functions-perl all 0.003-1.1 [12.1 kB] Get:140 http://ftpmaster.internal/ubuntu jammy/main armhf libdevel-callchecker-perl armhf 0.008-1ubuntu3 [14.6 kB] Get:141 http://ftpmaster.internal/ubuntu jammy/main armhf libparams-classify-perl armhf 0.015-1build4 [20.5 kB] Get:142 http://ftpmaster.internal/ubuntu jammy/main armhf libmodule-runtime-perl all 0.016-1 [16.2 kB] Get:143 http://ftpmaster.internal/ubuntu jammy/main armhf libtry-tiny-perl all 0.30-1 [20.5 kB] Get:144 http://ftpmaster.internal/ubuntu jammy/main armhf libmodule-implementation-perl all 0.09-1.1 [11.6 kB] Get:145 http://ftpmaster.internal/ubuntu jammy/universe armhf libscalar-list-utils-perl armhf 1:1.59-1 [54.7 kB] Get:146 http://ftpmaster.internal/ubuntu jammy/main armhf libpackage-stash-perl all 0.39-1 [19.1 kB] Get:147 http://ftpmaster.internal/ubuntu jammy/universe armhf libclass-load-perl all 0.25-1 [13.5 kB] Get:148 http://ftpmaster.internal/ubuntu jammy/universe armhf libclass-load-xs-perl armhf 0.10-1build6 [13.0 kB] Get:149 http://ftpmaster.internal/ubuntu jammy/main armhf libsub-exporter-progressive-perl all 0.001013-1 [6784 B] Get:150 http://ftpmaster.internal/ubuntu jammy/universe armhf libdevel-globaldestruction-perl all 0.14-1.1 [6916 B] Get:151 http://ftpmaster.internal/ubuntu jammy/universe armhf libalgorithm-c3-perl all 0.11-1 [11.0 kB] Get:152 http://ftpmaster.internal/ubuntu jammy/universe armhf libclass-c3-perl all 0.35-1 [19.0 kB] Get:153 http://ftpmaster.internal/ubuntu jammy/universe armhf libmro-compat-perl all 0.13-1 [11.2 kB] Get:154 http://ftpmaster.internal/ubuntu jammy/universe armhf libdevel-overloadinfo-perl all 0.007-1 [7422 B] Get:155 http://ftpmaster.internal/ubuntu jammy/main armhf libdevel-stacktrace-perl all 2.0400-1 [22.7 kB] Get:156 http://ftpmaster.internal/ubuntu jammy/main armhf libsub-exporter-perl all 0.988-1 [50.6 kB] Get:157 http://ftpmaster.internal/ubuntu jammy/universe armhf libeval-closure-perl all 0.14-1 [10.3 kB] Get:158 http://ftpmaster.internal/ubuntu jammy/universe armhf libdist-checkconflicts-perl all 0.11-1.1 [9632 B] Get:159 http://ftpmaster.internal/ubuntu jammy/universe armhf libmodule-runtime-conflicts-perl all 0.003-1.1 [6836 B] Get:160 http://ftpmaster.internal/ubuntu jammy/main armhf libsub-name-perl armhf 0.26-1build2 [11.0 kB] Get:161 http://ftpmaster.internal/ubuntu jammy/universe armhf libpackage-deprecationmanager-perl all 0.17-1.1 [15.5 kB] Get:162 http://ftpmaster.internal/ubuntu jammy/main armhf libpackage-stash-xs-perl armhf 0.29-1build4 [17.7 kB] Get:163 http://ftpmaster.internal/ubuntu jammy/universe armhf libmoose-perl armhf 2.2200-1 [749 kB] Get:164 http://ftpmaster.internal/ubuntu jammy/main armhf libvariable-magic-perl armhf 0.62-1build4 [33.0 kB] Get:165 http://ftpmaster.internal/ubuntu jammy/main armhf libb-hooks-endofscope-perl all 0.25-1 [17.8 kB] Get:166 http://ftpmaster.internal/ubuntu jammy/main armhf libsub-identify-perl armhf 0.14-1build4 [10.2 kB] Get:167 http://ftpmaster.internal/ubuntu jammy/main armhf libnamespace-clean-perl all 0.27-1 [13.6 kB] Get:168 http://ftpmaster.internal/ubuntu jammy/main armhf libcurl3-gnutls armhf 7.74.0-1.3ubuntu2 [234 kB] Get:169 http://ftpmaster.internal/ubuntu jammy/universe armhf libwww-curl-perl armhf 4.17-7build1 [49.7 kB] Get:170 http://ftpmaster.internal/ubuntu jammy/universe armhf libwww-curl-simple-perl all 0.100191-2 [10.9 kB] Get:171 http://ftpmaster.internal/ubuntu jammy/universe armhf dh-r all 20210218ubuntu1 [36.4 kB] Get:172 http://ftpmaster.internal/ubuntu jammy/main armhf libboost1.74-dev armhf 1.74.0-13ubuntu1 [9619 kB] Get:173 http://ftpmaster.internal/ubuntu jammy/main armhf libboost-dev armhf 1.74.0.3ubuntu6 [3452 B] Get:174 http://ftpmaster.internal/ubuntu jammy-proposed/universe armhf libgslcblas0 armhf 2.7+dfsg-2 [73.6 kB] Get:175 http://ftpmaster.internal/ubuntu jammy-proposed/universe armhf libgsl25 armhf 2.7+dfsg-2 [842 kB] Get:176 http://ftpmaster.internal/ubuntu jammy-proposed/universe armhf r-bioc-biocgenerics all 0.40.0-1 [583 kB] Get:177 http://ftpmaster.internal/ubuntu jammy-proposed/universe armhf r-bioc-biobase armhf 2.54.0-1 [2221 kB] Get:178 http://ftpmaster.internal/ubuntu jammy-proposed/universe armhf r-bioc-s4vectors armhf 0.32.3-1 [2054 kB] Get:179 http://ftpmaster.internal/ubuntu jammy-proposed/universe armhf r-bioc-iranges armhf 2.28.0-1 [2214 kB] Get:180 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-dbi all 1.1.1-1 [617 kB] Get:181 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-bit armhf 4.0.4+dfsg-1 [417 kB] Get:182 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-bit64 armhf 4.0.5-1 [462 kB] Get:183 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-rlang armhf 0.4.12-2 [1174 kB] Get:184 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-ellipsis armhf 0.3.2-2 [35.0 kB] Get:185 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-glue armhf 1.5.0-1 [142 kB] Get:186 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-vctrs armhf 0.3.8-1ubuntu1 [1061 kB] Get:187 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-blob all 1.2.2-1 [50.1 kB] Get:188 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-fastmap armhf 1.1.0-1 [63.2 kB] Get:189 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-cachem armhf 1.0.6-1 [70.2 kB] Get:190 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-memoise all 2.0.0-1 [52.8 kB] Get:191 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] Get:192 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-littler armhf 0.3.14-1 [88.8 kB] Get:193 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-pkgkitten all 0.2.2-2 [25.3 kB] Get:194 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-rcpp armhf 1.0.7-2 [1950 kB] Get:195 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-plogr all 0.2.0-3build1 [15.1 kB] Get:196 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-rsqlite armhf 2.2.8-1 [1021 kB] Get:197 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-curl armhf 4.3.2+dfsg-1 [154 kB] Get:198 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-jsonlite armhf 1.7.2+dfsg-1 [443 kB] Get:199 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-mime armhf 0.12-1 [35.5 kB] Get:200 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-sys armhf 3.4-1 [42.1 kB] Get:201 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-askpass armhf 1.1-2 [22.1 kB] Get:202 http://ftpmaster.internal/ubuntu jammy-proposed/universe armhf r-cran-openssl armhf 1.4.5+dfsg-1build1 [385 kB] Get:203 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-r6 all 2.5.1-1 [99.0 kB] Get:204 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-httr all 1.4.2-1 [478 kB] Get:205 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-png armhf 0.1-7-4 [38.6 kB] Get:206 http://ftpmaster.internal/ubuntu jammy-proposed/universe armhf r-bioc-zlibbioc all 1.40.0+dfsg-1 [9270 B] Get:207 http://ftpmaster.internal/ubuntu jammy-proposed/universe armhf r-bioc-xvector armhf 0.34.0-1 [607 kB] Get:208 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-bitops armhf 1.0-7-1 [29.4 kB] Get:209 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-rcurl armhf 1.98-1.5-1 [806 kB] Get:210 http://ftpmaster.internal/ubuntu jammy/universe armhf r-bioc-genomeinfodbdata all 1.2.6-1 [11.0 MB] Get:211 http://ftpmaster.internal/ubuntu jammy-proposed/universe armhf r-bioc-genomeinfodb all 1.30.0-1 [3951 kB] Get:212 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-crayon all 1.4.2-1 [159 kB] Get:213 http://ftpmaster.internal/ubuntu jammy-proposed/universe armhf r-bioc-biostrings armhf 2.62.0-1 [14.1 MB] Get:214 http://ftpmaster.internal/ubuntu jammy-proposed/universe armhf r-bioc-keggrest all 1.34.0+dfsg-1 [179 kB] Get:215 http://ftpmaster.internal/ubuntu jammy-proposed/universe armhf r-bioc-annotationdbi all 1.56.2-1 [4928 kB] Get:216 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-xml armhf 3.99-0.8-1 [1701 kB] Get:217 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-xtable all 1:1.8-4-2 [689 kB] Get:218 http://ftpmaster.internal/ubuntu jammy-proposed/universe armhf r-bioc-annotate all 1.72.0+dfsg-1 [1966 kB] Get:219 http://ftpmaster.internal/ubuntu jammy-proposed/universe armhf r-bioc-biocio all 1.4.0+dfsg-1 [201 kB] Get:220 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-formatr all 1.11-1 [154 kB] Get:221 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-lambda.r all 1.2.4-2build1 [119 kB] Get:222 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-futile.options all 1.0.1-3build1 [20.2 kB] Get:223 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] Get:224 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-snow all 1:0.4.4-1 [97.6 kB] Get:225 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-bh all 1.74.0-2 [5564 B] Get:226 http://ftpmaster.internal/ubuntu jammy-proposed/universe armhf r-bioc-biocparallel armhf 1.28.1-1 [1361 kB] Get:227 http://ftpmaster.internal/ubuntu jammy-proposed/universe armhf r-bioc-genomicranges armhf 1.46.1+dfsg-1 [1850 kB] Get:228 http://ftpmaster.internal/ubuntu jammy-proposed/universe armhf r-bioc-rhtslib armhf 1.26.0+dfsg-1 [1017 kB] Get:229 http://ftpmaster.internal/ubuntu jammy-proposed/universe armhf r-bioc-rsamtools armhf 2.10.0-1 [3641 kB] Get:230 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-matrixstats armhf 0.61.0-1 [459 kB] Get:231 http://ftpmaster.internal/ubuntu jammy-proposed/universe armhf r-bioc-matrixgenerics all 1.6.0-1 [302 kB] Get:232 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-lattice armhf 0.20-45-1 [1130 kB] Get:233 http://ftpmaster.internal/ubuntu jammy/universe armhf r-cran-matrix armhf 1.3-4-2 [3574 kB] Get:234 http://ftpmaster.internal/ubuntu jammy-proposed/universe armhf r-bioc-delayedarray armhf 0.20.0+dfsg-1 [1961 kB] Get:235 http://ftpmaster.internal/ubuntu jammy-proposed/universe armhf r-bioc-summarizedexperiment all 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r-cran-vroom_1.5.6-1 r-cran-withr_2.4.2-1 r-cran-xml_3.99-0.8-1 r-cran-xtable_1:1.8-4-2 r-cran-yaml_2.2.1-1build1 readline-common_8.1-2build1 rpcsvc-proto_1.4.2-0ubuntu5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-tfbstools-dummy_0.invalid.0 sed_4.7-1ubuntu2 sensible-utils_0.0.17 systemd_248.3-1ubuntu8 systemd-sysv_248.3-1ubuntu8 systemd-timesyncd_248.3-1ubuntu8 sysvinit-utils_2.96-7ubuntu2 tar_1.34+dfsg-1build2 tzdata_2021e-1ubuntu1 ubuntu-keyring_2021.03.26 ucf_3.0043 unzip_6.0-26ubuntu2 usrmerge_25ubuntu2 util-linux_2.37.2-4ubuntu1 x11-common_1:7.7+23ubuntu1 xauth_1:1.1-1build1 xdg-utils_1.1.3-4.1ubuntu1 xz-utils_5.2.5-2build1 zip_3.0-12build1 zlib1g_1:1.2.11.dfsg-2ubuntu7 zlib1g-dev_1:1.2.11.dfsg-2ubuntu7 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Fri Nov 26 07:24:32 2021 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-bioc-tfbstools_1.32.0+dfsg-1.dsc dpkg-source: info: extracting r-bioc-tfbstools in /<>/r-bioc-tfbstools-1.32.0+dfsg dpkg-source: info: unpacking r-bioc-tfbstools_1.32.0+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-tfbstools_1.32.0+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Fix_autopkgtest.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-22454043 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-22454043 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-22454043 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package r-bioc-tfbstools dpkg-buildpackage: info: source version 1.32.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary-arch dh binary-arch --buildsystem R dh_update_autotools_config -a -O--buildsystem=R dh_autoreconf -a -O--buildsystem=R dh_auto_configure -a -O--buildsystem=R dh_auto_build -a -O--buildsystem=R dh_auto_test -a -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=R dh_prep -a -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-tfbstools/ -a -O--buildsystem=R I: R packages needed for DEP8: testthat I: R Package: TFBSTools Version: 1.32.0 I: Building using R version 4.1.2-1ubuntu1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Fri, 26 Nov 2021 08:20:20 +0100 mkdir -p /<>/r-bioc-tfbstools-1.32.0\+dfsg/debian/r-bioc-tfbstools/usr/lib/R/site-library R CMD INSTALL -l /<>/r-bioc-tfbstools-1.32.0\+dfsg/debian/r-bioc-tfbstools/usr/lib/R/site-library --clean . "--built-timestamp='Fri, 26 Nov 2021 08:20:20 +0100'" * installing *source* package ‘TFBSTools’ ... ** using staged installation ** libs make[1]: Entering directory '/<>/r-bioc-tfbstools-1.32.0+dfsg/src' gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-0TAnD3/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c matrixAlignerDynamic.c -o matrixAlignerDynamic.o gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-0TAnD3/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_TFBSTools.c -o R_init_TFBSTools.o gcc -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o TFBSTools.so matrixAlignerDynamic.o R_init_TFBSTools.o -L/usr/lib/R/lib -lR make[1]: Leaving directory '/<>/r-bioc-tfbstools-1.32.0+dfsg/src' make[1]: Entering directory '/<>/r-bioc-tfbstools-1.32.0+dfsg/src' make[1]: Leaving directory '/<>/r-bioc-tfbstools-1.32.0+dfsg/src' installing to /<>/r-bioc-tfbstools-1.32.0+dfsg/debian/r-bioc-tfbstools/usr/lib/R/site-library/00LOCK-r-bioc-tfbstools-1.32.0+dfsg/00new/TFBSTools/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘seqLogo’ in package ‘TFBSTools’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TFBSTools) W: Ignoring specified R dependency: R (>= 3.2.2) I: Using r-cran-testthat for Recommends:testthat I: Using r-bioc-biocstyle for Suggests:BiocStyle (>= 1.7.7) W: Cannot find a debian package for Suggests:JASPAR2014 (>= 1.4.0) I: Using r-cran-knitr for Suggests:knitr (>= 1.11) W: Cannot find a debian package for Suggests:JASPAR2016 (>= 1.0.0) W: Cannot find a debian package for Suggests:JASPAR2018 (>= 1.0.0) I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-bioc-biobase for Imports:Biobase (>= 2.28) I: Using r-bioc-biostrings for Imports:Biostrings (>= 2.36.4) I: Using r-bioc-biocgenerics for Imports:BiocGenerics (>= 0.14.0) I: Using r-bioc-biocparallel for Imports:BiocParallel (>= 1.2.21) I: Using r-bioc-bsgenome for Imports:BSgenome (>= 1.36.3) I: Using r-cran-catools for Imports:caTools (>= 1.17.1) I: Using r-bioc-cner for Imports:CNEr (>= 1.4.0) I: Using r-bioc-dirichletmultinomial for Imports:DirichletMultinomial (>= 1.10.0) I: Using r-bioc-genomeinfodb for Imports:GenomeInfoDb (>= 1.6.1) I: Using r-bioc-genomicranges for Imports:GenomicRanges (>= 1.20.6) I: Using r-cran-gtools for Imports:gtools (>= 3.5.0) I: Using r-bioc-iranges for Imports:IRanges (>= 2.2.7) I: Using r-cran-dbi for Imports:DBI (>= 0.6) I: Using r-cran-rsqlite for Imports:RSQLite (>= 1.0.0) I: Using r-bioc-rtracklayer for Imports:rtracklayer (>= 1.28.10) I: Using r-bioc-seqlogo for Imports:seqLogo (>= 1.34.0) I: Using r-bioc-s4vectors for Imports:S4Vectors (>= 0.9.25) I: Using r-cran-tfmpvalue for Imports:TFMPvalue (>= 0.0.5) I: Using r-cran-xml for Imports:XML (>= 3.98-1.3) I: Using r-bioc-xvector for Imports:XVector (>= 0.8.0) I: BioConductor API version: r-api-bioc-3.14 I: Use r-bioc-tfbstools as Debian binary package for variables substitution dh_installdocs -a -O--buildsystem=R dh_installchangelogs -a -O--buildsystem=R dh_installsystemduser -a -O--buildsystem=R dh_perl -a -O--buildsystem=R dh_link -a -O--buildsystem=R dh_strip_nondeterminism -a -O--buildsystem=R dh_compress -a -O--buildsystem=R dh_fixperms -a -O--buildsystem=R dh_missing -a -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R 81dd715c68d768af8464335c1609bc966279bf3a dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -a -O--buildsystem=R dh_gencontrol -a -O--buildsystem=R dh_md5sums -a -O--buildsystem=R dh_builddeb -a -O--buildsystem=R INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing r-bioc-tfbstools (in debian/r-bioc-tfbstools); do_strip: , oemstrip: pkgstriptranslations: processing r-bioc-tfbstools-dbgsym (in debian/.debhelper/r-bioc-tfbstools/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/r-bioc-tfbstools/dbgsym-root/DEBIAN/control, package r-bioc-tfbstools-dbgsym, directory debian/.debhelper/r-bioc-tfbstools/dbgsym-root dpkg-deb: building package 'r-bioc-tfbstools-dbgsym' in 'debian/.debhelper/scratch-space/build-r-bioc-tfbstools/r-bioc-tfbstools-dbgsym_1.32.0+dfsg-1_armhf.deb'. pkgstripfiles: processing control file: debian/r-bioc-tfbstools/DEBIAN/control, package r-bioc-tfbstools, directory debian/r-bioc-tfbstools pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-bioc-tfbstools ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-bioc-tfbstools' in '../r-bioc-tfbstools_1.32.0+dfsg-1_armhf.deb'. Renaming r-bioc-tfbstools-dbgsym_1.32.0+dfsg-1_armhf.deb to r-bioc-tfbstools-dbgsym_1.32.0+dfsg-1_armhf.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../r-bioc-tfbstools_1.32.0+dfsg-1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-11-26T11:22:24Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-bioc-tfbstools_1.32.0+dfsg-1_armhf.changes: --------------------------------------------- Format: 1.8 Date: Fri, 26 Nov 2021 08:20:20 +0100 Source: r-bioc-tfbstools Binary: r-bioc-tfbstools Built-For-Profiles: noudeb Architecture: armhf Version: 1.32.0+dfsg-1 Distribution: jammy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: r-bioc-tfbstools - GNU R Transcription Factor Binding Site (TFBS) Analysis Changes: r-bioc-tfbstools (1.32.0+dfsg-1) unstable; urgency=medium . * New upstream version * dh-update-R to update Build-Depends (routine-update) Checksums-Sha1: 7fd78c86bf05582a6f892da6fee7777682da46fc 8544 r-bioc-tfbstools-dbgsym_1.32.0+dfsg-1_armhf.ddeb 5fc867f361e267c097df8be6da96832c86485bf3 14525 r-bioc-tfbstools_1.32.0+dfsg-1_armhf.buildinfo b6322b2a052c24dad4388a439807afaf295c86af 1087214 r-bioc-tfbstools_1.32.0+dfsg-1_armhf.deb Checksums-Sha256: 2a434e2296870ac6de68fadd52de5de55f4ff401c54244c221b28f61389d82c5 8544 r-bioc-tfbstools-dbgsym_1.32.0+dfsg-1_armhf.ddeb 5857a439910f3b81e010e49d33e167a0ffb8333eaa7776a4ef67522d578ec62d 14525 r-bioc-tfbstools_1.32.0+dfsg-1_armhf.buildinfo 9e2f239d0a679d62e155f7ef31dd81b21676a9e23fcecc067a1e1806406bb50b 1087214 r-bioc-tfbstools_1.32.0+dfsg-1_armhf.deb Files: b138fe422673d9d2dada574bfd7c0d69 8544 debug optional r-bioc-tfbstools-dbgsym_1.32.0+dfsg-1_armhf.ddeb d0fa77e0171d2571c4f1b0ad238482ae 14525 gnu-r optional r-bioc-tfbstools_1.32.0+dfsg-1_armhf.buildinfo 20bf07f47be4d4c99bd8274d31a7d49b 1087214 gnu-r optional r-bioc-tfbstools_1.32.0+dfsg-1_armhf.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: r-bioc-tfbstools Binary: r-bioc-tfbstools r-bioc-tfbstools-dbgsym Architecture: armhf Version: 1.32.0+dfsg-1 Checksums-Md5: b138fe422673d9d2dada574bfd7c0d69 8544 r-bioc-tfbstools-dbgsym_1.32.0+dfsg-1_armhf.ddeb 20bf07f47be4d4c99bd8274d31a7d49b 1087214 r-bioc-tfbstools_1.32.0+dfsg-1_armhf.deb Checksums-Sha1: 7fd78c86bf05582a6f892da6fee7777682da46fc 8544 r-bioc-tfbstools-dbgsym_1.32.0+dfsg-1_armhf.ddeb b6322b2a052c24dad4388a439807afaf295c86af 1087214 r-bioc-tfbstools_1.32.0+dfsg-1_armhf.deb Checksums-Sha256: 2a434e2296870ac6de68fadd52de5de55f4ff401c54244c221b28f61389d82c5 8544 r-bioc-tfbstools-dbgsym_1.32.0+dfsg-1_armhf.ddeb 9e2f239d0a679d62e155f7ef31dd81b21676a9e23fcecc067a1e1806406bb50b 1087214 r-bioc-tfbstools_1.32.0+dfsg-1_armhf.deb Build-Origin: Ubuntu Build-Architecture: armhf Build-Date: Fri, 26 Nov 2021 11:22:23 +0000 Build-Path: /<>/r-bioc-tfbstools-1.32.0+dfsg Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.1), autopoint (= 0.21-4ubuntu3), autotools-dev (= 20180224.1+nmu1), base-files (= 12ubuntu2), base-passwd (= 3.5.52), bash (= 5.1-3ubuntu2), binutils (= 2.37-10ubuntu1), binutils-arm-linux-gnueabihf (= 2.37-10ubuntu1), binutils-common (= 2.37-10ubuntu1), bsdextrautils (= 2.37.2-4ubuntu1), bsdutils (= 1:2.37.2-4ubuntu1), build-essential (= 12.9ubuntu2), bzip2 (= 1.0.8-4ubuntu4), ca-certificates (= 20211016), coreutils (= 8.32-4ubuntu3), cpp (= 4:11.2.0-1ubuntu1), cpp-11 (= 11.2.0-12ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-3), dctrl-tools (= 2.24-3build1), debconf (= 1.5.79), debhelper (= 13.5.2ubuntu1), debianutils (= 5.5-1), debugedit (= 1:5.0-3), dh-autoreconf (= 20), dh-r (= 20210218ubuntu1), dh-strip-nondeterminism (= 1.12.1-1), diffutils (= 1:3.8-0ubuntu1), dpkg (= 1.20.9ubuntu2), dpkg-dev (= 1.20.9ubuntu2), dwz (= 0.14-1build1), file (= 1:5.41-2), findutils (= 4.8.0-1ubuntu2), fontconfig (= 2.13.1-4.2ubuntu4), fontconfig-config (= 2.13.1-4.2ubuntu4), fonts-dejavu-core (= 2.37-2build1), g++ (= 4:11.2.0-1ubuntu1), g++-11 (= 11.2.0-12ubuntu1), gcc (= 4:11.2.0-1ubuntu1), gcc-11 (= 11.2.0-12ubuntu1), gcc-11-base (= 11.2.0-12ubuntu1), gettext (= 0.21-4ubuntu3), gettext-base (= 0.21-4ubuntu3), gfortran (= 4:11.2.0-1ubuntu1), gfortran-11 (= 11.2.0-12ubuntu1), grep (= 3.7-1), groff-base (= 1.22.4-7), gzip (= 1.10-4ubuntu2), hostname (= 3.23ubuntu1), icu-devtools (= 67.1-7ubuntu1), init-system-helpers (= 1.60build1), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-10ubuntu2), libalgorithm-c3-perl (= 0.11-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.2.0-12ubuntu1), libatomic1 (= 11.2.0-12ubuntu1), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0-2ubuntu3), libaudit1 (= 1:3.0-2ubuntu3), libb-hooks-endofscope-perl (= 0.25-1), libb-hooks-op-check-perl (= 0.22-1build4), libbinutils (= 2.37-10ubuntu1), libblas-dev (= 3.9.0-3ubuntu3), libblas3 (= 3.9.0-3ubuntu3), libblkid1 (= 2.37.2-4ubuntu1), libboost-dev (= 1.74.0.3ubuntu6), libboost1.74-dev (= 1.74.0-13ubuntu1), libbrotli1 (= 1.0.9-2build4), libbsd0 (= 0.11.3-1ubuntu3), libbz2-1.0 (= 1.0.8-4ubuntu4), libbz2-dev (= 1.0.8-4ubuntu4), libc-bin (= 2.34-0ubuntu3), libc-dev-bin (= 2.34-0ubuntu3), libc6 (= 2.34-0ubuntu3), libc6-dev (= 2.34-0ubuntu3), libcairo2 (= 1.16.0-5ubuntu2), libcap-ng0 (= 0.7.9-2.2build2), libcap2 (= 1:2.44-1build2), libcc1-0 (= 11.2.0-12ubuntu1), libclass-c3-perl (= 0.35-1), libclass-load-perl (= 0.25-1), libclass-load-xs-perl (= 0.10-1build6), libcom-err2 (= 1.46.4-1ubuntu1), libcrypt-dev (= 1:4.4.26-1), libcrypt1 (= 1:4.4.26-1), libctf-nobfd0 (= 2.37-10ubuntu1), libctf0 (= 2.37-10ubuntu1), libcurl3-gnutls (= 7.74.0-1.3ubuntu2), libcurl4 (= 7.74.0-1.3ubuntu2), libdata-optlist-perl (= 0.112-1), libdatrie1 (= 0.2.13-1ubuntu3), libdb5.3 (= 5.3.28+dfsg1-0.8ubuntu2), libdebconfclient0 (= 0.256ubuntu4), libdebhelper-perl (= 13.5.2ubuntu1), libdeflate0 (= 1.8-1ubuntu1), libdevel-callchecker-perl (= 0.008-1ubuntu3), libdevel-globaldestruction-perl (= 0.14-1.1), libdevel-overloadinfo-perl (= 0.007-1), libdevel-stacktrace-perl (= 2.0400-1), libdist-checkconflicts-perl (= 0.11-1.1), libdpkg-perl (= 1.20.9ubuntu2), libdw1 (= 0.186-1), libdynaloader-functions-perl (= 0.003-1.1), libelf1 (= 0.186-1), libencode-locale-perl (= 1.05-1.1), libeval-closure-perl (= 0.14-1), libexpat1 (= 2.4.1-3), libffi8 (= 3.4.2-1ubuntu5), libfile-stripnondeterminism-perl (= 1.12.1-1), libfile-which-perl (= 1.23-1), libfontconfig1 (= 2.13.1-4.2ubuntu4), libfreetype6 (= 2.11.0+dfsg-1), libfribidi0 (= 1.0.8-2ubuntu2), libgcc-11-dev (= 11.2.0-12ubuntu1), libgcc-s1 (= 11.2.0-12ubuntu1), libgcrypt20 (= 1.9.4-3ubuntu2), libgdbm-compat4 (= 1.22-1), libgdbm6 (= 1.22-1), libgfortran-11-dev (= 11.2.0-12ubuntu1), libgfortran5 (= 11.2.0-12ubuntu1), libglib2.0-0 (= 2.70.1-1), libgmp10 (= 2:6.2.1+dfsg-1ubuntu3), libgnutls30 (= 3.7.2-2ubuntu1), libgomp1 (= 11.2.0-12ubuntu1), libgpg-error0 (= 1.42-3), libgraphite2-3 (= 1.3.14-1build1), libgsl25 (= 2.7+dfsg-2), libgslcblas0 (= 2.7+dfsg-2), libgssapi-krb5-2 (= 1.18.3-7), libharfbuzz0b (= 2.7.4-1ubuntu2), libhogweed6 (= 3.7.3-1build1), libhttp-date-perl (= 6.05-1), libhttp-message-perl (= 6.35-1), libice6 (= 2:1.0.10-1build1), libicu-dev (= 67.1-7ubuntu1), libicu67 (= 67.1-7ubuntu1), libidn2-0 (= 2.3.2-2), libio-html-perl (= 1.004-2), libisl23 (= 0.24-2), libjbig0 (= 2.1-3.1build2), libjpeg-dev (= 8c-2ubuntu8), libjpeg-turbo8 (= 2.1.1-0ubuntu1), libjpeg-turbo8-dev (= 2.1.1-0ubuntu1), libjpeg8 (= 8c-2ubuntu8), libjpeg8-dev (= 8c-2ubuntu8), libk5crypto3 (= 1.18.3-7), libkeyutils1 (= 1.6.1-2ubuntu2), libkrb5-3 (= 1.18.3-7), libkrb5support0 (= 1.18.3-7), liblapack-dev (= 3.9.0-3ubuntu3), liblapack3 (= 3.9.0-3ubuntu3), libldap-2.5-0 (= 2.5.6+dfsg-1~exp1ubuntu1), liblwp-mediatypes-perl (= 6.04-1), liblz4-1 (= 1.9.3-2build1), liblzma-dev (= 5.2.5-2build1), liblzma5 (= 5.2.5-2build1), libmagic-mgc (= 1:5.41-2), libmagic1 (= 1:5.41-2), libmd0 (= 1.0.4-1), libmodule-implementation-perl (= 0.09-1.1), libmodule-runtime-conflicts-perl (= 0.003-1.1), libmodule-runtime-perl (= 0.016-1), libmoose-perl (= 2.2200-1), libmount1 (= 2.37.2-4ubuntu1), libmpc3 (= 1.2.1-1), libmpfr6 (= 4.1.0-3build2), libmro-compat-perl (= 0.13-1), libnamespace-clean-perl (= 0.27-1), libncurses-dev (= 6.3-1), libncurses5-dev (= 6.3-1), libncurses6 (= 6.3-1), libncursesw6 (= 6.3-1), libnettle8 (= 3.7.3-1build1), libnghttp2-14 (= 1.43.0-1build1), libnsl-dev (= 1.3.0-2build1), libnsl2 (= 1.3.0-2build1), libp11-kit0 (= 0.24.0-5), libpackage-deprecationmanager-perl (= 0.17-1.1), libpackage-stash-perl (= 0.39-1), libpackage-stash-xs-perl (= 0.29-1build4), libpam-modules (= 1.4.0-10ubuntu1), libpam-modules-bin (= 1.4.0-10ubuntu1), libpam-runtime (= 1.4.0-10ubuntu1), libpam0g (= 1.4.0-10ubuntu1), libpango-1.0-0 (= 1.48.10+ds1-1), libpangocairo-1.0-0 (= 1.48.10+ds1-1), libpangoft2-1.0-0 (= 1.48.10+ds1-1), libpaper-utils (= 1.1.28build1), libpaper1 (= 1.1.28build1), libparams-classify-perl (= 0.015-1build4), libparams-util-perl (= 1.102-1build2), libpcre16-3 (= 2:8.39-13build4), libpcre2-16-0 (= 10.39-3), libpcre2-32-0 (= 10.39-3), libpcre2-8-0 (= 10.39-3), libpcre2-dev (= 10.39-3), libpcre2-posix3 (= 10.39-3), libpcre3 (= 2:8.39-13build4), libpcre3-dev (= 2:8.39-13build4), libpcre32-3 (= 2:8.39-13build4), libpcrecpp0v5 (= 2:8.39-13build4), libperl5.32 (= 5.32.1-3ubuntu3), libpipeline1 (= 1.5.4-1), libpixman-1-0 (= 0.40.0-1build3), libpng-dev (= 1.6.37-3build4), libpng16-16 (= 1.6.37-3build4), libpsl5 (= 0.21.0-1.2build1), libreadline-dev (= 8.1-2build1), libreadline8 (= 8.1-2build1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build3), libsasl2-2 (= 2.1.27+dfsg2-2build1), libsasl2-modules-db (= 2.1.27+dfsg2-2build1), libscalar-list-utils-perl (= 1:1.59-1), libseccomp2 (= 2.5.2-2ubuntu2), libselinux1 (= 3.3-1), libsigsegv2 (= 2.13-1ubuntu2), libsm6 (= 2:1.2.3-1build1), libsmartcols1 (= 2.37.2-4ubuntu1), libssh-4 (= 0.9.6-1), libssl1.1 (= 1.1.1l-1ubuntu1), libssl3 (= 3.0.0-1ubuntu1), libstdc++-11-dev (= 11.2.0-12ubuntu1), libstdc++6 (= 11.2.0-12ubuntu1), libsub-exporter-perl (= 0.988-1), libsub-exporter-progressive-perl (= 0.001013-1), libsub-identify-perl (= 0.14-1build4), libsub-install-perl (= 0.928-1.1), libsub-name-perl (= 0.26-1build2), libsub-override-perl (= 0.09-2), libswitch-perl (= 2.17-2.1), libsystemd0 (= 248.3-1ubuntu8), libtasn1-6 (= 4.18.0-4), libtcl8.6 (= 8.6.12+dfsg-1), libthai-data (= 0.1.28-4.1), libthai0 (= 0.1.28-4.1), libtiff5 (= 4.3.0-2), libtimedate-perl (= 2.3300-2), libtinfo6 (= 6.3-1), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtk8.6 (= 8.6.12-1), libtool (= 2.4.6-15build1), libtry-tiny-perl (= 0.30-1), libubsan1 (= 11.2.0-12ubuntu1), libuchardet0 (= 0.0.7-1build1), libudev1 (= 248.3-1ubuntu8), libunistring2 (= 0.9.10-6), liburi-perl (= 5.10-1), libuuid1 (= 2.37.2-4ubuntu1), libvariable-magic-perl (= 0.62-1build4), libwebp6 (= 0.6.1-2.1build1), libwww-curl-perl (= 4.17-7build1), libwww-curl-simple-perl (= 0.100191-2), libx11-6 (= 2:1.7.2-2), libx11-data (= 2:1.7.2-2), libxau6 (= 1:1.0.9-1build4), libxcb-render0 (= 1.14-3ubuntu2), libxcb-shm0 (= 1.14-3ubuntu2), libxcb1 (= 1.14-3ubuntu2), libxdmcp6 (= 1:1.1.3-0ubuntu4), libxext6 (= 2:1.3.4-1), libxft2 (= 2.3.3-0ubuntu4), libxml2 (= 2.9.12+dfsg-5), libxmuu1 (= 2:1.1.3-0ubuntu2), libxrender1 (= 1:0.9.10-1build3), libxss1 (= 1:1.2.3-1build1), libxt6 (= 1:1.2.0-1build1), libzstd1 (= 1.4.8+dfsg-3), linux-libc-dev (= 5.15.0-12.12), login (= 1:4.8.1-1ubuntu10), lsb-base (= 11.1.0ubuntu3), lto-disabled-list (= 16), m4 (= 1.4.18-5ubuntu1), make (= 4.3-4ubuntu2), man-db (= 2.9.4-2build1), mawk (= 1.3.4.20200120-2build1), ncurses-base (= 6.3-1), ncurses-bin (= 6.3-1), openssl (= 3.0.0-1ubuntu1), patch (= 2.7.6-7build1), perl (= 5.32.1-3ubuntu3), perl-base (= 5.32.1-3ubuntu3), perl-modules-5.32 (= 5.32.1-3ubuntu3), pkg-config (= 0.29.2-1ubuntu2), po-debconf (= 1.0.21+nmu1), r-base-core (= 4.1.2-1ubuntu1), r-base-dev (= 4.1.2-1ubuntu1), r-bioc-annotate (= 1.72.0+dfsg-1), r-bioc-annotationdbi (= 1.56.2-1), r-bioc-biobase (= 2.54.0-1), r-bioc-biocgenerics (= 0.40.0-1), r-bioc-biocio (= 1.4.0+dfsg-1), r-bioc-biocparallel (= 1.28.1-1), r-bioc-biostrings (= 2.62.0-1), r-bioc-bsgenome (= 1.62.0-1), r-bioc-cner (= 1.30.0+dfsg-1), r-bioc-delayedarray (= 0.20.0+dfsg-1), r-bioc-dirichletmultinomial (= 1.36.0-1), r-bioc-genomeinfodb (= 1.30.0-1), r-bioc-genomeinfodbdata (= 1.2.6-1), r-bioc-genomicalignments (= 1.30.0-1), r-bioc-genomicranges (= 1.46.1+dfsg-1), r-bioc-go.db (= 3.13.0-1), r-bioc-iranges (= 2.28.0-1), r-bioc-keggrest (= 1.34.0+dfsg-1), r-bioc-matrixgenerics (= 1.6.0-1), r-bioc-rhtslib (= 1.26.0+dfsg-1), r-bioc-rsamtools (= 2.10.0-1), r-bioc-rtracklayer (= 1.54.0-1), r-bioc-s4vectors (= 0.32.3-1), r-bioc-seqlogo (= 1.60.0+dfsg-1), r-bioc-summarizedexperiment (= 1.24.0+dfsg-1), r-bioc-xvector (= 0.34.0-1), r-bioc-zlibbioc (= 1.40.0+dfsg-1), r-cran-askpass (= 1.1-2), r-cran-bh (= 1.74.0-2), r-cran-bit (= 4.0.4+dfsg-1), r-cran-bit64 (= 4.0.5-1), r-cran-bitops (= 1.0-7-1), r-cran-blob (= 1.2.2-1), r-cran-cachem (= 1.0.6-1), r-cran-catools (= 1.18.2-1), r-cran-cli (= 3.1.0-1), r-cran-clipr (= 0.7.1-1), r-cran-colorspace (= 2.0-2+dfsg-1), r-cran-cpp11 (= 0.4.1-1), r-cran-crayon (= 1.4.2-1), r-cran-curl (= 4.3.2+dfsg-1), r-cran-dbi (= 1.1.1-1), r-cran-digest (= 0.6.28-1), r-cran-ellipsis (= 0.3.2-2), r-cran-fansi (= 0.5.0-1), r-cran-farver (= 2.1.0-1), r-cran-fastmap (= 1.1.0-1), r-cran-formatr (= 1.11-1), r-cran-futile.logger (= 1.4.3-4build1), r-cran-futile.options (= 1.0.1-3build1), r-cran-ggplot2 (= 3.3.5+dfsg-2), r-cran-glue (= 1.5.0-1), r-cran-gtable (= 0.3.0+dfsg-2build1), r-cran-gtools (= 3.9.2-2), r-cran-hms (= 1.1.1-1), r-cran-httr (= 1.4.2-1), r-cran-isoband (= 0.2.5-1), r-cran-jsonlite (= 1.7.2+dfsg-1), r-cran-labeling (= 0.4.2-1), r-cran-lambda.r (= 1.2.4-2build1), r-cran-lattice (= 0.20-45-1), r-cran-lifecycle (= 1.0.1-1), r-cran-littler (= 0.3.14-1), r-cran-magrittr (= 2.0.1-1), r-cran-mass (= 7.3-54-2), r-cran-matrix (= 1.3-4-2), r-cran-matrixstats (= 0.61.0-1), r-cran-memoise (= 2.0.0-1), r-cran-mgcv (= 1.8-38-1), r-cran-mime (= 0.12-1), r-cran-munsell (= 0.5.0-2build1), r-cran-nlme (= 3.1.153-1), r-cran-openssl (= 1.4.5+dfsg-1build1), r-cran-pillar (= 1.6.4+dfsg-1), r-cran-pkgconfig (= 2.0.3-2build1), r-cran-pkgkitten (= 0.2.2-2), r-cran-plogr (= 0.2.0-3build1), r-cran-plyr (= 1.8.6-2build1), r-cran-png (= 0.1-7-4), r-cran-powerlaw (= 0.70.6-2build1), r-cran-pracma (= 2.3.3-1), r-cran-prettyunits (= 1.1.1-2build1), r-cran-progress (= 1.2.2-2build1), r-cran-purrr (= 0.3.4-1build1), r-cran-r.methodss3 (= 1.8.1-1), r-cran-r.oo (= 1.24.0-1), r-cran-r.utils (= 2.11.0-1), r-cran-r6 (= 2.5.1-1), r-cran-rcolorbrewer (= 1.1-2-3), r-cran-rcpp (= 1.0.7-2), r-cran-rcurl (= 1.98-1.5-1), r-cran-readr (= 2.1.0-1), r-cran-reshape2 (= 1.4.4-2build1), r-cran-restfulr (= 0.0.13-2), r-cran-rjson (= 0.2.20-2), r-cran-rlang (= 0.4.12-2), r-cran-rsqlite (= 2.2.8-1), r-cran-scales (= 1.1.1-1build1), r-cran-snow (= 1:0.4.4-1), r-cran-stringi (= 1.7.5-1), r-cran-stringr (= 1.4.0-2build1), r-cran-sys (= 3.4-1), r-cran-tfmpvalue (= 0.0.8-2), r-cran-tibble (= 3.1.6+dfsg-1), r-cran-tidyselect (= 1.1.1+dfsg-1), r-cran-tzdb (= 0.2.0-1), r-cran-utf8 (= 1.2.2-1), r-cran-vctrs (= 0.3.8-1ubuntu1), r-cran-viridislite (= 0.4.0-2), r-cran-vroom (= 1.5.6-1), r-cran-withr (= 2.4.2-1), r-cran-xml (= 3.99-0.8-1), r-cran-xtable (= 1:1.8-4-2), r-cran-yaml (= 2.2.1-1build1), readline-common (= 8.1-2build1), rpcsvc-proto (= 1.4.2-0ubuntu5), sed (= 4.7-1ubuntu2), sensible-utils (= 0.0.17), sysvinit-utils (= 2.96-7ubuntu2), tar (= 1.34+dfsg-1build2), tzdata (= 2021e-1ubuntu1), ucf (= 3.0043), unzip (= 6.0-26ubuntu2), util-linux (= 2.37.2-4ubuntu1), x11-common (= 1:7.7+23ubuntu1), xauth (= 1:1.1-1build1), xdg-utils (= 1.1.3-4.1ubuntu1), xz-utils (= 5.2.5-2build1), zip (= 3.0-12build1), zlib1g (= 1:1.2.11.dfsg-2ubuntu7), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu7) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1637911220" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-bioc-tfbstools_1.32.0+dfsg-1_armhf.deb ---------------------------------------- new Debian package, version 2.0. size 1087214 bytes: control archive=2549 bytes. 1564 bytes, 19 lines control 4535 bytes, 53 lines md5sums Package: r-bioc-tfbstools Version: 1.32.0+dfsg-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian R Packages Maintainers Installed-Size: 1944 Depends: r-base-core (>= 4.1.2-1ubuntu1), r-api-4.0, r-api-bioc-3.14, r-bioc-biobase (>= 2.28), r-bioc-biostrings (>= 2.36.4), r-bioc-biocgenerics (>= 0.14.0), r-bioc-biocparallel (>= 1.2.21), r-bioc-bsgenome (>= 1.36.3), r-cran-catools (>= 1.17.1), r-bioc-cner (>= 1.4.0), r-bioc-dirichletmultinomial (>= 1.10.0), r-bioc-genomeinfodb (>= 1.6.1), r-bioc-genomicranges (>= 1.20.6), r-cran-gtools (>= 3.5.0), r-bioc-iranges (>= 2.2.7), r-cran-dbi (>= 0.6), r-cran-rsqlite (>= 1.0.0), r-bioc-rtracklayer (>= 1.28.10), r-bioc-seqlogo (>= 1.34.0), r-bioc-s4vectors (>= 0.9.25), r-cran-tfmpvalue (>= 0.0.5), r-cran-xml (>= 3.98-1.3), r-bioc-xvector (>= 0.8.0), libc6 (>= 2.4) Recommends: r-cran-testthat Suggests: r-bioc-biocstyle (>= 1.7.7), r-cran-knitr (>= 1.11), r-cran-rmarkdown Section: gnu-r Priority: optional Homepage: https://bioconductor.org/packages/TFBSTools/ Description: GNU R Transcription Factor Binding Site (TFBS) Analysis TFBSTools is a package for the analysis and manipulation of transcription factor binding sites. 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+------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: any Build-Space: n/a Build-Time: 118 Distribution: jammy-proposed Host Architecture: armhf Install-Time: 58 Job: r-bioc-tfbstools_1.32.0+dfsg-1.dsc Machine Architecture: arm64 Package: r-bioc-tfbstools Package-Time: 178 Source-Version: 1.32.0+dfsg-1 Space: n/a Status: successful Version: 1.32.0+dfsg-1 -------------------------------------------------------------------------------- Finished at 2021-11-26T11:22:24Z Build needed 00:02:58, no disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=jammy --arch=armhf PACKAGEBUILD-22454043 Scanning for processes to kill in build PACKAGEBUILD-22454043