https://launchpad.net/ubuntu/+source/r-cran-hdf5/1.6.10-4.1build2/+build/15767324 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lgw01-amd64-026 4.4.0-140-generic #166-Ubuntu SMP Wed Nov 14 20:09:47 UTC 2018 x86_64 Buildd toolchain package versions: launchpad-buildd_165 python-lpbuildd_165 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 12 Dec 10:44:42 ntpdate[1824]: adjust time server 10.211.37.1 offset 0.003952 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-15767324 /home/buildd/filecache-default/b71572c9405b6ce6ff1d1ad001cf764bb07f52ae Creating target for build PACKAGEBUILD-15767324 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-15767324 Starting target for build PACKAGEBUILD-15767324 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-15767324 'deb http://ftpmaster.internal/ubuntu disco main universe' 'deb http://ftpmaster.internal/ubuntu disco-security main universe' 'deb http://ftpmaster.internal/ubuntu disco-updates main universe' 'deb http://ftpmaster.internal/ubuntu disco-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-15767324 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-15767324 Updating target for build PACKAGEBUILD-15767324 Get:1 http://ftpmaster.internal/ubuntu disco InRelease [243 kB] Get:2 http://ftpmaster.internal/ubuntu disco-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu disco-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed InRelease [93.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main amd64 Packages [1005 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main Translation-en [509 kB] Get:7 http://ftpmaster.internal/ubuntu disco/universe amd64 Packages [8966 kB] Get:8 http://ftpmaster.internal/ubuntu disco/universe Translation-en [5148 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 Packages [62.3 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main Translation-en [29.0 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/universe amd64 Packages [327 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/universe Translation-en [160 kB] Fetched 16.7 MB in 7s (2439 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libgdbm6 libperl5.28 perl-modules-5.28 The following packages will be upgraded: apt base-files binutils binutils-common binutils-x86-64-linux-gnu cpp cpp-8 dash dmsetup dpkg dpkg-dev e2fslibs e2fsprogs fakeroot findutils g++ g++-8 gcc gcc-8 gcc-8-base grep hostname init init-system-helpers libapparmor1 libapt-pkg5.0 libasan5 libatomic1 libaudit-common libaudit1 libbinutils libcap-ng0 libcc1-0 libcom-err2 libcomerr2 libdb5.3 libdevmapper1.02.1 libdpkg-perl libext2fs2 libfakeroot libffi6 libgcc-8-dev libgcc1 libgcrypt20 libgdbm-compat4 libgmp10 libgnutls30 libgomp1 libgpg-error0 libhogweed4 libip4tc0 libitm1 libkmod2 liblsan0 libmpfr6 libmpx2 libnettle6 libquadmath0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsqlite3-0 libss2 libssl1.1 libstdc++-8-dev libstdc++6 libsystemd0 libtsan0 libubsan1 libudev1 linux-libc-dev lockfile-progs openssl perl perl-base sed systemd systemd-sysv tar tzdata 81 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 55.6 MB of archives. After this operation, 48.9 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu disco/main amd64 base-files amd64 10.1ubuntu8 [60.1 kB] Get:2 http://ftpmaster.internal/ubuntu disco/main amd64 tar amd64 1.30+dfsg-3 [242 kB] Get:3 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 dpkg amd64 1.19.2ubuntu2 [1101 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main amd64 dash amd64 0.5.10.2-1 [89.3 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main amd64 findutils amd64 4.6.0+git+20181018-1 [295 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main amd64 grep amd64 3.1-3 [152 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main amd64 hostname amd64 3.21 [11.2 kB] Get:8 http://ftpmaster.internal/ubuntu disco/main amd64 perl-modules-5.28 all 5.28.1-3 [2812 kB] Get:9 http://ftpmaster.internal/ubuntu disco/main amd64 libgdbm6 amd64 1.18.1-2 [27.6 kB] Get:10 http://ftpmaster.internal/ubuntu disco/main amd64 libgdbm-compat4 amd64 1.18.1-2 [6152 B] Get:11 http://ftpmaster.internal/ubuntu disco/main amd64 libperl5.28 amd64 5.28.1-3 [3820 kB] Get:12 http://ftpmaster.internal/ubuntu disco/main amd64 perl amd64 5.28.1-3 [204 kB] Get:13 http://ftpmaster.internal/ubuntu disco/main amd64 perl-base amd64 5.28.1-3 [1513 kB] Get:14 http://ftpmaster.internal/ubuntu disco/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.2 [672 kB] Get:15 http://ftpmaster.internal/ubuntu disco/main amd64 sed amd64 4.5-2 [186 kB] Get:16 http://ftpmaster.internal/ubuntu disco/main amd64 init-system-helpers all 1.56 [38.8 kB] Get:17 http://ftpmaster.internal/ubuntu disco/main amd64 libquadmath0 amd64 8.2.0-12ubuntu1 [134 kB] Get:18 http://ftpmaster.internal/ubuntu disco/main amd64 libubsan1 amd64 8.2.0-12ubuntu1 [121 kB] Get:19 http://ftpmaster.internal/ubuntu disco/main amd64 gcc-8-base amd64 8.2.0-12ubuntu1 [18.6 kB] Get:20 http://ftpmaster.internal/ubuntu disco/main amd64 libgcc1 amd64 1:8.2.0-12ubuntu1 [40.7 kB] Get:21 http://ftpmaster.internal/ubuntu disco/main amd64 libitm1 amd64 8.2.0-12ubuntu1 [28.1 kB] Get:22 http://ftpmaster.internal/ubuntu disco/main amd64 libasan5 amd64 8.2.0-12ubuntu1 [364 kB] Get:23 http://ftpmaster.internal/ubuntu disco/main amd64 libgomp1 amd64 8.2.0-12ubuntu1 [76.4 kB] Get:24 http://ftpmaster.internal/ubuntu disco/main amd64 libatomic1 amd64 8.2.0-12ubuntu1 [9088 B] Get:25 http://ftpmaster.internal/ubuntu disco/main amd64 liblsan0 amd64 8.2.0-12ubuntu1 [132 kB] Get:26 http://ftpmaster.internal/ubuntu disco/main amd64 libtsan0 amd64 8.2.0-12ubuntu1 [287 kB] Get:27 http://ftpmaster.internal/ubuntu disco/main amd64 libmpx2 amd64 8.2.0-12ubuntu1 [11.7 kB] Get:28 http://ftpmaster.internal/ubuntu disco/main amd64 cpp-8 amd64 8.2.0-12ubuntu1 [7225 kB] Get:29 http://ftpmaster.internal/ubuntu disco/main amd64 libcc1-0 amd64 8.2.0-12ubuntu1 [39.6 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main amd64 gcc-8 amd64 8.2.0-12ubuntu1 [8001 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main amd64 g++-8 amd64 8.2.0-12ubuntu1 [8112 kB] Get:32 http://ftpmaster.internal/ubuntu disco/main amd64 libstdc++-8-dev amd64 8.2.0-12ubuntu1 [1540 kB] Get:33 http://ftpmaster.internal/ubuntu disco/main amd64 libgcc-8-dev amd64 8.2.0-12ubuntu1 [2304 kB] Get:34 http://ftpmaster.internal/ubuntu disco/main amd64 libstdc++6 amd64 8.2.0-12ubuntu1 [398 kB] Get:35 http://ftpmaster.internal/ubuntu disco/main amd64 libgmp10 amd64 2:6.1.2+dfsg-4 [236 kB] Get:36 http://ftpmaster.internal/ubuntu disco/main amd64 libmpfr6 amd64 4.0.1-2 [241 kB] Get:37 http://ftpmaster.internal/ubuntu disco/main amd64 libbinutils amd64 2.31.1-10ubuntu1 [482 kB] Get:38 http://ftpmaster.internal/ubuntu disco/main amd64 binutils-common amd64 2.31.1-10ubuntu1 [194 kB] Get:39 http://ftpmaster.internal/ubuntu disco/main amd64 binutils amd64 2.31.1-10ubuntu1 [3396 B] Get:40 http://ftpmaster.internal/ubuntu disco/main amd64 binutils-x86-64-linux-gnu amd64 2.31.1-10ubuntu1 [1830 kB] Get:41 http://ftpmaster.internal/ubuntu disco/main amd64 libudev1 amd64 239-7ubuntu15 [54.7 kB] Get:42 http://ftpmaster.internal/ubuntu disco/main amd64 libapt-pkg5.0 amd64 1.8.0~alpha2ubuntu1 [814 kB] Get:43 http://ftpmaster.internal/ubuntu disco/main amd64 libnettle6 amd64 3.4.1~rc1-1 [111 kB] Get:44 http://ftpmaster.internal/ubuntu disco/main amd64 libhogweed4 amd64 3.4.1~rc1-1 [140 kB] Get:45 http://ftpmaster.internal/ubuntu disco/main amd64 libgnutls30 amd64 3.6.4-2ubuntu2 [747 kB] Get:46 http://ftpmaster.internal/ubuntu disco/main amd64 libseccomp2 amd64 2.3.3-3ubuntu2 [38.9 kB] Get:47 http://ftpmaster.internal/ubuntu disco/main amd64 apt amd64 1.8.0~alpha2ubuntu1 [1182 kB] Get:48 http://ftpmaster.internal/ubuntu disco/main amd64 systemd-sysv amd64 239-7ubuntu15 [9396 B] Get:49 http://ftpmaster.internal/ubuntu disco/main amd64 libapparmor1 amd64 2.12-4ubuntu10 [29.9 kB] Get:50 http://ftpmaster.internal/ubuntu disco/main amd64 libaudit-common all 1:2.8.3-1ubuntu3 [4068 B] Get:51 http://ftpmaster.internal/ubuntu disco/main amd64 libcap-ng0 amd64 0.7.9-1build1 [10.9 kB] Get:52 http://ftpmaster.internal/ubuntu disco/main amd64 libaudit1 amd64 1:2.8.3-1ubuntu3 [38.8 kB] Get:53 http://ftpmaster.internal/ubuntu disco/main amd64 libgpg-error0 amd64 1.32-3 [56.0 kB] Get:54 http://ftpmaster.internal/ubuntu disco/main amd64 libkmod2 amd64 25-1ubuntu2 [41.7 kB] Get:55 http://ftpmaster.internal/ubuntu disco/main amd64 systemd amd64 239-7ubuntu15 [2971 kB] Get:56 http://ftpmaster.internal/ubuntu disco/main amd64 libsystemd0 amd64 239-7ubuntu15 [212 kB] Get:57 http://ftpmaster.internal/ubuntu disco/main amd64 libext2fs2 amd64 1.44.4-2ubuntu1 [159 kB] Get:58 http://ftpmaster.internal/ubuntu disco/main amd64 e2fsprogs amd64 1.44.4-2ubuntu1 [513 kB] Get:59 http://ftpmaster.internal/ubuntu disco/main amd64 init amd64 1.56 [6652 B] Get:60 http://ftpmaster.internal/ubuntu disco/main amd64 libgcrypt20 amd64 1.8.4-3ubuntu1 [420 kB] Get:61 http://ftpmaster.internal/ubuntu disco/main amd64 libselinux1 amd64 2.8-1build2 [68.6 kB] Get:62 http://ftpmaster.internal/ubuntu disco/main amd64 libsemanage-common all 2.8-1build2 [6892 B] Get:63 http://ftpmaster.internal/ubuntu disco/main amd64 libsemanage1 amd64 2.8-1build2 [85.1 kB] Get:64 http://ftpmaster.internal/ubuntu disco/main amd64 libffi6 amd64 3.2.1-9 [18.1 kB] Get:65 http://ftpmaster.internal/ubuntu disco/main amd64 libcom-err2 amd64 1.44.4-2ubuntu1 [8844 B] Get:66 http://ftpmaster.internal/ubuntu disco/main amd64 libss2 amd64 1.44.4-2ubuntu1 [11.1 kB] Get:67 http://ftpmaster.internal/ubuntu disco/main amd64 libdevmapper1.02.1 amd64 2:1.02.145-4.1ubuntu4 [127 kB] Get:68 http://ftpmaster.internal/ubuntu disco/main amd64 dmsetup amd64 2:1.02.145-4.1ubuntu4 [74.6 kB] Get:69 http://ftpmaster.internal/ubuntu disco/main amd64 libip4tc0 amd64 1.6.1-2ubuntu3 [19.7 kB] Get:70 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libsqlite3-0 amd64 3.26.0-3 [530 kB] Get:71 http://ftpmaster.internal/ubuntu disco/main amd64 libssl1.1 amd64 1.1.1a-1ubuntu2 [1297 kB] Get:72 http://ftpmaster.internal/ubuntu disco/main amd64 openssl amd64 1.1.1a-1ubuntu2 [618 kB] Get:73 http://ftpmaster.internal/ubuntu disco/main amd64 tzdata all 2018g-1 [188 kB] Get:74 http://ftpmaster.internal/ubuntu disco/main amd64 g++ amd64 4:8.2.0-2ubuntu2 [1608 B] Get:75 http://ftpmaster.internal/ubuntu disco/main amd64 gcc amd64 4:8.2.0-2ubuntu2 [5224 B] Get:76 http://ftpmaster.internal/ubuntu disco/main amd64 cpp amd64 4:8.2.0-2ubuntu2 [27.6 kB] Get:77 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 dpkg-dev all 1.19.2ubuntu2 [549 kB] Get:78 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libdpkg-perl all 1.19.2ubuntu2 [227 kB] Get:79 http://ftpmaster.internal/ubuntu disco/main amd64 e2fslibs amd64 1.44.4-2ubuntu1 [2712 B] Get:80 http://ftpmaster.internal/ubuntu disco/main amd64 libfakeroot amd64 1.23-1 [25.3 kB] Get:81 http://ftpmaster.internal/ubuntu disco/main amd64 fakeroot amd64 1.23-1 [62.4 kB] Get:82 http://ftpmaster.internal/ubuntu disco/main amd64 libcomerr2 amd64 1.44.4-2ubuntu1 [2712 B] Get:83 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 linux-libc-dev amd64 4.19.0-8.9 [1036 kB] Get:84 http://ftpmaster.internal/ubuntu disco/main amd64 lockfile-progs amd64 0.1.18 [9872 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 55.6 MB in 3s (16.7 MB/s) (Reading database ... 12650 files and directories currently installed.) 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Processing triggers for libc-bin (2.28-0ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15767324 amd64 disco-proposed -c chroot:build-PACKAGEBUILD-15767324 --arch=amd64 --dist=disco-proposed --nolog -A r-cran-hdf5_1.6.10-4.1build2.dsc Initiating build PACKAGEBUILD-15767324 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-140-generic #166-Ubuntu SMP Wed Nov 14 20:09:47 UTC 2018 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-026.buildd +==============================================================================+ | r-cran-hdf5 1.6.10-4.1build2 (amd64) 12 Dec 2018 10:45 | +==============================================================================+ Package: r-cran-hdf5 Version: 1.6.10-4.1build2 Source Version: 1.6.10-4.1build2 Distribution: disco-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/r-cran-hdf5-dkBHQ3/r-cran-hdf5-1.6.10' with '<>' I: NOTICE: Log filtering will replace 'build/r-cran-hdf5-dkBHQ3' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15767324/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-cran-hdf5_1.6.10-4.1build2.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-KDBBq9/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-KDBBq9/apt_archive ./ InRelease Get:2 copy:/<>/resolver-KDBBq9/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-KDBBq9/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-KDBBq9/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-KDBBq9/apt_archive ./ Packages [523 B] Fetched 2856 B in 0s (57.1 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-KDBBq9/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14507 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 10), r-base-dev (>= 3.3.1), cdbs, libhdf5-dev Filtered Build-Depends: debhelper (>= 10), r-base-dev (>= 3.3.1), cdbs, libhdf5-dev dpkg-deb: building package 'sbuild-build-depends-r-cran-hdf5-dummy' in '/<>/resolver-I1zLCG/apt_archive/sbuild-build-depends-r-cran-hdf5-dummy.deb'. Ign:1 copy:/<>/resolver-I1zLCG/apt_archive ./ InRelease Get:2 copy:/<>/resolver-I1zLCG/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-I1zLCG/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-I1zLCG/apt_archive ./ Sources [239 B] Get:5 copy:/<>/resolver-I1zLCG/apt_archive ./ Packages [555 B] Fetched 2913 B in 0s (43.2 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install r-cran-hdf5 build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libgdbm5 libperl5.26 perl-modules-5.26 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cdbs debhelper dh-autoreconf dh-strip-nondeterminism dh-translations dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-8 groff-base hdf5-helpers icu-devtools intltool intltool-debian jq libaec-dev libaec0 libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libelf1 libencode-locale-perl libexpat1 libfile-listing-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-8-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b libhcrypto4-heimdal libhdf5-103 libhdf5-cpp-103 libhdf5-dev libheimbase1-heimdal libheimntlm0-heimdal libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhx509-5-heimdal libice6 libicu-dev libicu63 libio-html-perl libio-socket-ssl-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjq1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic-mgc libmagic1 libmpdec2 libncurses-dev libncurses5-dev libnet-http-perl libnet-ssleay-perl libnghttp2-14 libonig5 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libsz2 libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl liburi-perl libwebp6 libwind0-heimdal libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db mime-support netbase perl-openssl-defaults pkg-config po-debconf python3 python3-minimal python3-pkg-resources python3-scour python3-six python3.7 python3.7-minimal r-base-core r-base-dev scour ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation devscripts dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-8-multilib gfortran-8-doc libgfortran5-dbg libcoarrays-dev groff liblapack-doc krb5-doc krb5-user libhdf5-doc libdata-dump-perl icu-doc libcrypt-ssleay-perl liblzma-doc ncurses-doc readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk libauthen-ntlm-perl m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3-setuptools python3.7-venv python3.7-doc binfmt-support ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo gir1.2-rsvg-2.0 python3-gi-cairo Recommended packages: curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libhtml-format-perl krb5-locales libpng-tools publicsuffix libsasl2-modules libltdl-dev libdata-dump-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl libmail-sendmail-perl r-recommended r-doc-html libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cdbs debhelper dh-autoreconf dh-strip-nondeterminism dh-translations dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-8 groff-base hdf5-helpers icu-devtools intltool intltool-debian jq libaec-dev libaec0 libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libelf1 libencode-locale-perl libexpat1 libfile-listing-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-8-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b libhcrypto4-heimdal libhdf5-103 libhdf5-cpp-103 libhdf5-dev libheimbase1-heimdal libheimntlm0-heimdal libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhx509-5-heimdal libice6 libicu-dev libicu63 libio-html-perl libio-socket-ssl-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjq1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic-mgc libmagic1 libmpdec2 libncurses-dev libncurses5-dev libnet-http-perl libnet-ssleay-perl libnghttp2-14 libonig5 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libsz2 libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl liburi-perl libwebp6 libwind0-heimdal libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db mime-support netbase perl-openssl-defaults pkg-config po-debconf python3 python3-minimal python3-pkg-resources python3-scour python3-six python3.7 python3.7-minimal r-base-core r-base-dev sbuild-build-depends-r-cran-hdf5-dummy scour ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 177 newly installed, 0 to remove and 0 not upgraded. Need to get 85.1 MB of archives. After this operation, 289 MB of additional disk space will be used. Get:1 copy:/<>/resolver-I1zLCG/apt_archive ./ sbuild-build-depends-r-cran-hdf5-dummy 0.invalid.0 [888 B] Get:2 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libpython3.7-minimal amd64 3.7.2~rc1-1 [545 kB] Get:3 http://ftpmaster.internal/ubuntu disco/main amd64 libexpat1 amd64 2.2.6-1 [87.2 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 python3.7-minimal amd64 3.7.2~rc1-1 [1685 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main amd64 python3-minimal amd64 3.7.1-1ubuntu1 [23.6 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main amd64 mime-support all 3.60ubuntu1 [30.1 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main amd64 libmpdec2 amd64 2.4.2-2 [84.1 kB] Get:8 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libpython3.7-stdlib amd64 3.7.2~rc1-1 [1732 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 python3.7 amd64 3.7.2~rc1-1 [277 kB] Get:10 http://ftpmaster.internal/ubuntu disco/main amd64 libpython3-stdlib amd64 3.7.1-1ubuntu1 [7128 B] Get:11 http://ftpmaster.internal/ubuntu disco/main amd64 python3 amd64 3.7.1-1ubuntu1 [47.2 kB] Get:12 http://ftpmaster.internal/ubuntu disco/main amd64 libxau6 amd64 1:1.0.8-1 [8376 B] Get:13 http://ftpmaster.internal/ubuntu disco/main amd64 libbsd0 amd64 0.9.1-1 [44.6 kB] Get:14 http://ftpmaster.internal/ubuntu disco/main amd64 libxdmcp6 amd64 1:1.1.2-3 [10.7 kB] Get:15 http://ftpmaster.internal/ubuntu disco/main amd64 libxcb1 amd64 1.13.1-1 [45.4 kB] Get:16 http://ftpmaster.internal/ubuntu disco/main amd64 libx11-data all 2:1.6.7-1 [113 kB] Get:17 http://ftpmaster.internal/ubuntu disco/main amd64 libx11-6 amd64 2:1.6.7-1 [572 kB] Get:18 http://ftpmaster.internal/ubuntu disco/main amd64 libxext6 amd64 2:1.3.3-1 [29.4 kB] Get:19 http://ftpmaster.internal/ubuntu disco/main amd64 bsdmainutils amd64 11.1.2ubuntu2 [181 kB] Get:20 http://ftpmaster.internal/ubuntu disco/main amd64 groff-base amd64 1.22.3-10 [1153 kB] Get:21 http://ftpmaster.internal/ubuntu disco/main amd64 libpipeline1 amd64 1.5.0-2 [25.7 kB] Get:22 http://ftpmaster.internal/ubuntu disco/main amd64 man-db amd64 2.8.4-3 [1028 kB] Get:23 http://ftpmaster.internal/ubuntu disco/main amd64 x11-common all 1:7.7+19ubuntu8 [22.5 kB] Get:24 http://ftpmaster.internal/ubuntu disco/main amd64 libice6 amd64 2:1.0.9-2 [40.2 kB] Get:25 http://ftpmaster.internal/ubuntu disco/main amd64 libsm6 amd64 2:1.2.2-1 [15.8 kB] Get:26 http://ftpmaster.internal/ubuntu disco/main amd64 libmagic-mgc amd64 1:5.34-2 [197 kB] Get:27 http://ftpmaster.internal/ubuntu disco/main amd64 libmagic1 amd64 1:5.34-2 [72.3 kB] Get:28 http://ftpmaster.internal/ubuntu disco/main amd64 file amd64 1:5.34-2 [22.8 kB] Get:29 http://ftpmaster.internal/ubuntu disco/main amd64 libelf1 amd64 0.175-1 [44.2 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main amd64 libfribidi0 amd64 1.0.5-3 [26.1 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main amd64 libglib2.0-0 amd64 2.58.1-2 [1176 kB] Get:32 http://ftpmaster.internal/ubuntu disco/main amd64 libicu63 amd64 63.1-5 [8284 kB] Get:33 http://ftpmaster.internal/ubuntu disco/main amd64 libxml2 amd64 2.9.4+dfsg1-7ubuntu3 [625 kB] Get:34 http://ftpmaster.internal/ubuntu disco/main amd64 netbase all 5.5 [12.9 kB] Get:35 http://ftpmaster.internal/ubuntu disco/main amd64 ucf all 3.0038 [50.5 kB] Get:36 http://ftpmaster.internal/ubuntu disco/main amd64 gettext-base amd64 0.19.8.1-9 [50.1 kB] Get:37 http://ftpmaster.internal/ubuntu disco/main amd64 libkrb5support0 amd64 1.16.1-1ubuntu1 [31.0 kB] Get:38 http://ftpmaster.internal/ubuntu disco/main amd64 libk5crypto3 amd64 1.16.1-1ubuntu1 [85.5 kB] Get:39 http://ftpmaster.internal/ubuntu disco/main amd64 libkeyutils1 amd64 1.5.9-9.3 [9640 B] Get:40 http://ftpmaster.internal/ubuntu disco/main amd64 libkrb5-3 amd64 1.16.1-1ubuntu1 [281 kB] Get:41 http://ftpmaster.internal/ubuntu disco/main amd64 libgssapi-krb5-2 amd64 1.16.1-1ubuntu1 [122 kB] Get:42 http://ftpmaster.internal/ubuntu disco/main amd64 libpsl5 amd64 0.20.2-2 [50.0 kB] Get:43 http://ftpmaster.internal/ubuntu disco/main amd64 libxmuu1 amd64 2:1.1.2-2 [9674 B] Get:44 http://ftpmaster.internal/ubuntu disco/main amd64 xauth amd64 1:1.0.10-1 [24.6 kB] Get:45 http://ftpmaster.internal/ubuntu disco/main amd64 libsigsegv2 amd64 2.12-2 [13.9 kB] Get:46 http://ftpmaster.internal/ubuntu disco/main amd64 m4 amd64 1.4.18-2 [199 kB] Get:47 http://ftpmaster.internal/ubuntu disco/main amd64 autoconf all 2.69-11 [322 kB] Get:48 http://ftpmaster.internal/ubuntu disco/main amd64 autotools-dev all 20180224.1 [39.6 kB] Get:49 http://ftpmaster.internal/ubuntu disco/main amd64 automake all 1:1.16.1-4 [522 kB] Get:50 http://ftpmaster.internal/ubuntu disco/main amd64 autopoint all 0.19.8.1-9 [412 kB] Get:51 http://ftpmaster.internal/ubuntu disco/main amd64 libtool all 2.4.6-6 [195 kB] Get:52 http://ftpmaster.internal/ubuntu disco/main amd64 dh-autoreconf all 19 [16.1 kB] Get:53 http://ftpmaster.internal/ubuntu disco/main amd64 libarchive-zip-perl all 1.64-1 [84.9 kB] Get:54 http://ftpmaster.internal/ubuntu disco/main amd64 libfile-stripnondeterminism-perl all 1.0.0-1 [13.9 kB] Get:55 http://ftpmaster.internal/ubuntu disco/main amd64 dh-strip-nondeterminism all 1.0.0-1 [5064 B] Get:56 http://ftpmaster.internal/ubuntu disco/main amd64 dwz amd64 0.12-3 [78.1 kB] Get:57 http://ftpmaster.internal/ubuntu disco/main amd64 libcroco3 amd64 0.6.12-2 [81.3 kB] Get:58 http://ftpmaster.internal/ubuntu disco/main amd64 gettext amd64 0.19.8.1-9 [896 kB] Get:59 http://ftpmaster.internal/ubuntu disco/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:60 http://ftpmaster.internal/ubuntu disco/main amd64 po-debconf all 1.0.21 [233 kB] Get:61 http://ftpmaster.internal/ubuntu disco/main amd64 debhelper all 11.5.3ubuntu1 [888 kB] Get:62 http://ftpmaster.internal/ubuntu disco/main amd64 liburi-perl all 1.74-1 [77.1 kB] Get:63 http://ftpmaster.internal/ubuntu disco/main amd64 libencode-locale-perl all 1.05-1 [12.3 kB] Get:64 http://ftpmaster.internal/ubuntu disco/main amd64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:65 http://ftpmaster.internal/ubuntu disco/main amd64 libhttp-date-perl all 6.02-1 [10.4 kB] Get:66 http://ftpmaster.internal/ubuntu disco/main amd64 libfile-listing-perl all 6.04-1 [9774 B] Get:67 http://ftpmaster.internal/ubuntu disco/main amd64 libhtml-tagset-perl all 3.20-3 [12.1 kB] Get:68 http://ftpmaster.internal/ubuntu disco/main amd64 libhtml-parser-perl amd64 3.72-3build2 [86.2 kB] Get:69 http://ftpmaster.internal/ubuntu disco/main amd64 libhtml-tree-perl all 5.07-1 [200 kB] Get:70 http://ftpmaster.internal/ubuntu disco/main amd64 libio-html-perl all 1.001-1 [14.9 kB] Get:71 http://ftpmaster.internal/ubuntu disco/main amd64 liblwp-mediatypes-perl all 6.02-1 [21.7 kB] Get:72 http://ftpmaster.internal/ubuntu disco/main amd64 libhttp-message-perl all 6.18-1 [75.3 kB] Get:73 http://ftpmaster.internal/ubuntu disco/main amd64 libhttp-cookies-perl all 6.04-1 [17.2 kB] Get:74 http://ftpmaster.internal/ubuntu disco/main amd64 libhttp-negotiate-perl all 6.01-1 [12.5 kB] Get:75 http://ftpmaster.internal/ubuntu disco/main amd64 perl-openssl-defaults amd64 3build1 [7012 B] Get:76 http://ftpmaster.internal/ubuntu disco/main amd64 libnet-ssleay-perl amd64 1.85-2ubuntu3 [283 kB] Get:77 http://ftpmaster.internal/ubuntu disco/main amd64 libio-socket-ssl-perl all 2.060-3 [173 kB] Get:78 http://ftpmaster.internal/ubuntu disco/main amd64 libnet-http-perl all 6.18-1 [22.8 kB] Get:79 http://ftpmaster.internal/ubuntu disco/main amd64 liblwp-protocol-https-perl all 6.07-2 [8284 B] Get:80 http://ftpmaster.internal/ubuntu disco/main amd64 libtry-tiny-perl all 0.30-1 [20.5 kB] Get:81 http://ftpmaster.internal/ubuntu disco/main amd64 libwww-robotrules-perl all 6.02-1 [12.6 kB] Get:82 http://ftpmaster.internal/ubuntu disco/main amd64 libwww-perl all 6.36-1 [138 kB] Get:83 http://ftpmaster.internal/ubuntu disco/main amd64 libxml-parser-perl amd64 2.44-2build4 [199 kB] Get:84 http://ftpmaster.internal/ubuntu disco/universe amd64 intltool all 0.51.0-5ubuntu1 [44.6 kB] Get:85 http://ftpmaster.internal/ubuntu disco/universe amd64 libonig5 amd64 6.9.0-1 [134 kB] Get:86 http://ftpmaster.internal/ubuntu disco/universe amd64 libjq1 amd64 1.5+dfsg-2build1 [112 kB] Get:87 http://ftpmaster.internal/ubuntu disco/universe amd64 jq amd64 1.5+dfsg-2build1 [46.1 kB] Get:88 http://ftpmaster.internal/ubuntu disco/main amd64 libfile-which-perl all 1.22-1 [12.0 kB] Get:89 http://ftpmaster.internal/ubuntu disco/universe amd64 dh-translations all 143 [24.7 kB] Get:90 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 python3-six all 1.12.0-1 [11.7 kB] Get:91 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 python3-pkg-resources all 40.6.2-1 [99.6 kB] Get:92 http://ftpmaster.internal/ubuntu disco/universe amd64 python3-scour all 0.37-1 [45.7 kB] Get:93 http://ftpmaster.internal/ubuntu disco/universe amd64 scour all 0.37-1 [7372 B] Get:94 http://ftpmaster.internal/ubuntu disco/universe amd64 cdbs all 0.4.156ubuntu4 [45.4 kB] Get:95 http://ftpmaster.internal/ubuntu disco/main amd64 libfreetype6 amd64 2.8.1-2ubuntu2 [335 kB] Get:96 http://ftpmaster.internal/ubuntu disco/main amd64 fonts-dejavu-core all 2.37-1 [1041 kB] Get:97 http://ftpmaster.internal/ubuntu disco/main amd64 fontconfig-config all 2.13.0-5ubuntu3 [28.4 kB] Get:98 http://ftpmaster.internal/ubuntu disco/main amd64 libfontconfig1 amd64 2.13.0-5ubuntu3 [112 kB] Get:99 http://ftpmaster.internal/ubuntu disco/main amd64 fontconfig amd64 2.13.0-5ubuntu3 [170 kB] Get:100 http://ftpmaster.internal/ubuntu disco/main amd64 libgfortran5 amd64 8.2.0-12ubuntu1 [587 kB] Get:101 http://ftpmaster.internal/ubuntu disco/main amd64 libgfortran-8-dev amd64 8.2.0-12ubuntu1 [621 kB] Get:102 http://ftpmaster.internal/ubuntu disco/main amd64 gfortran-8 amd64 8.2.0-12ubuntu1 [7645 kB] Get:103 http://ftpmaster.internal/ubuntu disco/main amd64 gfortran amd64 4:8.2.0-2ubuntu2 [1368 B] Get:104 http://ftpmaster.internal/ubuntu disco-proposed/universe amd64 hdf5-helpers amd64 1.10.4+repack-1 [12.8 kB] Get:105 http://ftpmaster.internal/ubuntu disco/main amd64 icu-devtools amd64 63.1-5 [183 kB] Get:106 http://ftpmaster.internal/ubuntu disco/universe amd64 libaec0 amd64 1.0.2-1 [19.1 kB] Get:107 http://ftpmaster.internal/ubuntu disco/main amd64 libroken18-heimdal amd64 7.5.0+dfsg-2.1 [41.4 kB] Get:108 http://ftpmaster.internal/ubuntu disco/main amd64 libasn1-8-heimdal amd64 7.5.0+dfsg-2.1 [182 kB] Get:109 http://ftpmaster.internal/ubuntu disco/main amd64 libblas3 amd64 3.8.0-2 [138 kB] Get:110 http://ftpmaster.internal/ubuntu disco/main amd64 libblas-dev amd64 3.8.0-2 [141 kB] Get:111 http://ftpmaster.internal/ubuntu disco/main amd64 libbz2-dev amd64 1.0.6-9 [30.2 kB] Get:112 http://ftpmaster.internal/ubuntu disco/main amd64 libpixman-1-0 amd64 0.34.0-2 [229 kB] Get:113 http://ftpmaster.internal/ubuntu disco/main amd64 libxcb-render0 amd64 1.13.1-1 [14.8 kB] Get:114 http://ftpmaster.internal/ubuntu disco/main amd64 libxcb-shm0 amd64 1.13.1-1 [5548 B] Get:115 http://ftpmaster.internal/ubuntu disco/main amd64 libxrender1 amd64 1:0.9.10-1 [18.7 kB] Get:116 http://ftpmaster.internal/ubuntu disco/main amd64 libcairo2 amd64 1.16.0-1 [584 kB] Get:117 http://ftpmaster.internal/ubuntu disco/main amd64 libheimbase1-heimdal amd64 7.5.0+dfsg-2.1 [29.4 kB] Get:118 http://ftpmaster.internal/ubuntu disco/main amd64 libhcrypto4-heimdal amd64 7.5.0+dfsg-2.1 [86.7 kB] Get:119 http://ftpmaster.internal/ubuntu disco/main amd64 libwind0-heimdal amd64 7.5.0+dfsg-2.1 [47.8 kB] Get:120 http://ftpmaster.internal/ubuntu disco/main amd64 libhx509-5-heimdal amd64 7.5.0+dfsg-2.1 [107 kB] Get:121 http://ftpmaster.internal/ubuntu disco/main amd64 libkrb5-26-heimdal amd64 7.5.0+dfsg-2.1 [206 kB] Get:122 http://ftpmaster.internal/ubuntu disco/main amd64 libheimntlm0-heimdal amd64 7.5.0+dfsg-2.1 [14.8 kB] Get:123 http://ftpmaster.internal/ubuntu disco/main amd64 libgssapi3-heimdal amd64 7.5.0+dfsg-2.1 [96.4 kB] Get:124 http://ftpmaster.internal/ubuntu disco/main amd64 libsasl2-modules-db amd64 2.1.27~101-g0780600+dfsg-3ubuntu2 [14.8 kB] Get:125 http://ftpmaster.internal/ubuntu disco/main amd64 libsasl2-2 amd64 2.1.27~101-g0780600+dfsg-3ubuntu2 [49.2 kB] Get:126 http://ftpmaster.internal/ubuntu disco/main amd64 libldap-common all 2.4.46+dfsg-5ubuntu3 [16.0 kB] Get:127 http://ftpmaster.internal/ubuntu disco/main amd64 libldap-2.4-2 amd64 2.4.46+dfsg-5ubuntu3 [154 kB] Get:128 http://ftpmaster.internal/ubuntu disco/main amd64 libnghttp2-14 amd64 1.35.0-1 [78.9 kB] Get:129 http://ftpmaster.internal/ubuntu disco/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [54.5 kB] Get:130 http://ftpmaster.internal/ubuntu disco/main amd64 libcurl4 amd64 7.61.0-1ubuntu2.2 [217 kB] Get:131 http://ftpmaster.internal/ubuntu disco/main amd64 libdatrie1 amd64 0.2.12-1 [18.3 kB] Get:132 http://ftpmaster.internal/ubuntu disco/main amd64 libgraphite2-3 amd64 1.3.12-1 [73.6 kB] Get:133 http://ftpmaster.internal/ubuntu disco/main amd64 libharfbuzz0b amd64 2.1.1-1build1 [328 kB] Get:134 http://ftpmaster.internal/ubuntu disco/universe amd64 libsz2 amd64 1.0.2-1 [5152 B] Get:135 http://ftpmaster.internal/ubuntu disco-proposed/universe amd64 libhdf5-103 amd64 1.10.4+repack-1 [1292 kB] Get:136 http://ftpmaster.internal/ubuntu disco-proposed/universe amd64 libhdf5-cpp-103 amd64 1.10.4+repack-1 [121 kB] Get:137 http://ftpmaster.internal/ubuntu disco/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-0ubuntu2 [176 kB] Get:138 http://ftpmaster.internal/ubuntu disco/main amd64 libjpeg-turbo8 amd64 2.0.0-0ubuntu2 [117 kB] Get:139 http://ftpmaster.internal/ubuntu disco/main amd64 libjpeg-turbo8-dev amd64 2.0.0-0ubuntu2 [238 kB] Get:140 http://ftpmaster.internal/ubuntu disco/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B] Get:141 http://ftpmaster.internal/ubuntu disco/main amd64 libjpeg8-dev amd64 8c-2ubuntu8 [1552 B] Get:142 http://ftpmaster.internal/ubuntu disco/main amd64 libjpeg-dev amd64 8c-2ubuntu8 [1546 B] Get:143 http://ftpmaster.internal/ubuntu disco/universe amd64 libaec-dev amd64 1.0.2-1 [16.9 kB] Get:144 http://ftpmaster.internal/ubuntu disco-proposed/universe amd64 libhdf5-dev amd64 1.10.4+repack-1 [2570 kB] Get:145 http://ftpmaster.internal/ubuntu disco/main amd64 libicu-dev amd64 63.1-5 [9178 kB] Get:146 http://ftpmaster.internal/ubuntu disco/main amd64 liblapack3 amd64 3.8.0-2 [2099 kB] Get:147 http://ftpmaster.internal/ubuntu disco/main amd64 liblapack-dev amd64 3.8.0-2 [2127 kB] Get:148 http://ftpmaster.internal/ubuntu disco/main amd64 libncurses-dev amd64 6.1+20180210-4ubuntu1 [333 kB] Get:149 http://ftpmaster.internal/ubuntu disco/main amd64 libncurses5-dev amd64 6.1+20180210-4ubuntu1 [972 B] Get:150 http://ftpmaster.internal/ubuntu disco/main amd64 libthai-data all 0.1.28-1 [134 kB] Get:151 http://ftpmaster.internal/ubuntu disco/main amd64 libthai0 amd64 0.1.28-1 [18.0 kB] Get:152 http://ftpmaster.internal/ubuntu disco/main amd64 libpango-1.0-0 amd64 1.42.4-4 [153 kB] Get:153 http://ftpmaster.internal/ubuntu disco/main amd64 libpangoft2-1.0-0 amd64 1.42.4-4 [35.3 kB] Get:154 http://ftpmaster.internal/ubuntu disco/main amd64 libpangocairo-1.0-0 amd64 1.42.4-4 [23.1 kB] Get:155 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libpaper1 amd64 1.1.26 [12.9 kB] Get:156 http://ftpmaster.internal/ubuntu disco-proposed/main amd64 libpaper-utils amd64 1.1.26 [8320 B] Get:157 http://ftpmaster.internal/ubuntu disco/main amd64 libpcre16-3 amd64 2:8.39-11 [149 kB] Get:158 http://ftpmaster.internal/ubuntu disco/main amd64 libpcre32-3 amd64 2:8.39-11 [140 kB] Get:159 http://ftpmaster.internal/ubuntu disco/main amd64 libpcrecpp0v5 amd64 2:8.39-11 [15.7 kB] Get:160 http://ftpmaster.internal/ubuntu disco/main amd64 libpcre3-dev amd64 2:8.39-11 [540 kB] Get:161 http://ftpmaster.internal/ubuntu disco/main amd64 libpng-dev amd64 1.6.34-2 [177 kB] Get:162 http://ftpmaster.internal/ubuntu disco/main amd64 libreadline-dev amd64 7.0-5 [133 kB] Get:163 http://ftpmaster.internal/ubuntu disco/main amd64 libtcl8.6 amd64 8.6.8+dfsg-4 [882 kB] Get:164 http://ftpmaster.internal/ubuntu disco/main amd64 libjbig0 amd64 2.1-3.1build1 [26.7 kB] Get:165 http://ftpmaster.internal/ubuntu disco/main amd64 libwebp6 amd64 0.6.1-2 [185 kB] Get:166 http://ftpmaster.internal/ubuntu disco/main amd64 libtiff5 amd64 4.0.10-3 [157 kB] Get:167 http://ftpmaster.internal/ubuntu disco/main amd64 libxft2 amd64 2.3.2-2 [38.5 kB] Get:168 http://ftpmaster.internal/ubuntu disco/main amd64 libxss1 amd64 1:1.2.3-1 [8140 B] Get:169 http://ftpmaster.internal/ubuntu disco/main amd64 libtk8.6 amd64 8.6.8-4 [693 kB] Get:170 http://ftpmaster.internal/ubuntu disco/main amd64 libxt6 amd64 1:1.1.5-1 [160 kB] Get:171 http://ftpmaster.internal/ubuntu disco/main amd64 pkg-config amd64 0.29.1-0ubuntu2 [45.0 kB] Get:172 http://ftpmaster.internal/ubuntu disco/main amd64 zip amd64 3.0-11build1 [167 kB] Get:173 http://ftpmaster.internal/ubuntu disco/main amd64 unzip amd64 6.0-21ubuntu1 [167 kB] Get:174 http://ftpmaster.internal/ubuntu disco/main amd64 xdg-utils all 1.1.3-1ubuntu2 [60.5 kB] Get:175 http://ftpmaster.internal/ubuntu disco/universe amd64 r-base-core amd64 3.5.1-2 [23.8 MB] Get:176 http://ftpmaster.internal/ubuntu disco/main amd64 liblzma-dev amd64 5.2.2-1.3 [145 kB] Get:177 http://ftpmaster.internal/ubuntu disco/universe amd64 r-base-dev all 3.5.1-2 [4520 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 85.1 MB in 5s (17.2 MB/s) Selecting previously unselected package libpython3.7-minimal:amd64. (Reading database ... 14507 files and directories currently installed.) Preparing to unpack .../libpython3.7-minimal_3.7.2~rc1-1_amd64.deb ... Unpacking libpython3.7-minimal:amd64 (3.7.2~rc1-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.2.6-1_amd64.deb ... Unpacking libexpat1:amd64 (2.2.6-1) ... Selecting previously unselected package python3.7-minimal. Preparing to unpack .../python3.7-minimal_3.7.2~rc1-1_amd64.deb ... Unpacking python3.7-minimal (3.7.2~rc1-1) ... Setting up libpython3.7-minimal:amd64 (3.7.2~rc1-1) ... Setting up libexpat1:amd64 (2.2.6-1) ... Setting up python3.7-minimal (3.7.2~rc1-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 14756 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.7.1-1ubuntu1_amd64.deb ... Unpacking python3-minimal (3.7.1-1ubuntu1) ... Selecting previously unselected package mime-support. 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Setting up hdf5-helpers (1.10.4+repack-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libx11-data (2:1.6.7-1) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-9) ... Setting up libmpdec2:amd64 (2.4.2-2) ... Setting up libsz2:amd64 (1.0.2-1) ... Setting up netbase (5.5) ... Setting up libwebp6:amd64 (0.6.1-2) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (1.0.0-1) ... Setting up libjpeg8:amd64 (8c-2ubuntu8) ... Setting up libpaper1:amd64 (1.1.26) ... Creating config file /etc/papersize with new version Setting up libk5crypto3:amd64 (1.16.1-1ubuntu1) ... Setting up libpaper-utils (1.1.26) ... Setting up jq (1.5+dfsg-2build1) ... Setting up libpcre3-dev:amd64 (2:8.39-11) ... Setting up libpython3.7-stdlib:amd64 (3.7.2~rc1-1) ... Setting up fontconfig-config (2.13.0-5ubuntu3) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libwind0-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up gettext (0.19.8.1-9) ... Setting up libblas-dev:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up libnet-ssleay-perl (1.85-2ubuntu3) ... Setting up libasn1-8-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up liblapack3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libhcrypto4-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up libaec-dev:amd64 (1.0.2-1) ... Setting up libharfbuzz0b:amd64 (2.1.1-1build1) ... Setting up libtiff5:amd64 (4.0.10-3) ... Setting up python3.7 (3.7.2~rc1-1) ... Setting up autoconf (2.69-11) ... Setting up libthai0:amd64 (0.1.28-1) ... Setting up libicu-dev (63.1-5) ... Setting up libhdf5-103:amd64 (1.10.4+repack-1) ... Setting up file (1:5.34-2) ... Setting up libhx509-5-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up libio-socket-ssl-perl (2.060-3) ... Setting up libhtml-tree-perl (5.07-1) ... Setting up libncurses5-dev:amd64 (6.1+20180210-4ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libjpeg8-dev:amd64 (8c-2ubuntu8) ... Setting up libjpeg-dev:amd64 (8c-2ubuntu8) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libreadline-dev:amd64 (7.0-5) ... Setting up libice6:amd64 (2:1.0.9-2) ... Setting up libfile-listing-perl (6.04-1) ... Setting up man-db (2.8.4-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libhttp-message-perl (6.18-1) ... Setting up libkrb5-3:amd64 (1.16.1-1ubuntu1) ... Setting up libkrb5-26-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up libpng-dev:amd64 (1.6.34-2) ... Setting up libgfortran-8-dev:amd64 (8.2.0-12ubuntu1) ... Setting up libxcb1:amd64 (1.13.1-1) ... Setting up libheimntlm0-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up libhttp-negotiate-perl (6.01-1) ... Setting up liblapack-dev:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libtool (2.4.6-6) ... Setting up libpython3-stdlib:amd64 (3.7.1-1ubuntu1) ... Setting up libfontconfig1:amd64 (2.13.0-5ubuntu3) ... Setting up libsm6:amd64 (2:1.2.2-1) ... Setting up libxcb-render0:amd64 (1.13.1-1) ... Setting up po-debconf (1.0.21) ... Setting up python3 (3.7.1-1ubuntu1) ... Setting up libhttp-cookies-perl (6.04-1) ... Setting up gfortran-8 (8.2.0-12ubuntu1) ... Setting up python3-six (1.12.0-1) ... Setting up libx11-6:amd64 (2:1.6.7-1) ... Setting up libhdf5-cpp-103:amd64 (1.10.4+repack-1) ... Setting up libhdf5-dev (1.10.4+repack-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up python3-pkg-resources (40.6.2-1) ... Setting up libxmuu1:amd64 (2:1.1.2-2) ... Setting up libgssapi-krb5-2:amd64 (1.16.1-1ubuntu1) ... Setting up libxcb-shm0:amd64 (1.13.1-1) ... Setting up libxt6:amd64 (1:1.1.5-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libxft2:amd64 (2.3.2-2) ... Setting up libgssapi3-heimdal:amd64 (7.5.0+dfsg-2.1) ... Setting up fontconfig (2.13.0-5ubuntu3) ... Regenerating fonts cache... done. Setting up gfortran (4:8.2.0-2ubuntu2) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libxext6:amd64 (2:1.3.3-1) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up python3-scour (0.37-1) ... Setting up scour (0.37-1) ... Setting up xauth (1:1.0.10-1) ... Setting up libldap-2.4-2:amd64 (2.4.46+dfsg-5ubuntu3) ... Setting up libpango-1.0-0:amd64 (1.42.4-4) ... Setting up libcairo2:amd64 (1.16.0-1) ... Setting up libtk8.6:amd64 (8.6.8-4) ... Setting up libcurl4:amd64 (7.61.0-1ubuntu2.2) ... Setting up libpangoft2-1.0-0:amd64 (1.42.4-4) ... Setting up libpangocairo-1.0-0:amd64 (1.42.4-4) ... Setting up r-base-core (3.5.1-2) ... Creating config file /etc/R/Renviron with new version Setting up r-base-dev (3.5.1-2) ... Setting up dh-autoreconf (19) ... Setting up liblwp-protocol-https-perl (6.07-2) ... Setting up dh-strip-nondeterminism (1.0.0-1) ... Setting up libwww-perl (6.36-1) ... Setting up debhelper (11.5.3ubuntu1) ... Setting up libxml-parser-perl (2.44-2build4) ... Setting up intltool (0.51.0-5ubuntu1) ... Setting up dh-translations (143) ... Setting up cdbs (0.4.156ubuntu4) ... Setting up sbuild-build-depends-r-cran-hdf5-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Processing triggers for systemd (239-7ubuntu15) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-140-generic amd64 (x86_64) Toolchain package versions: binutils_2.31.1-10ubuntu1 dpkg-dev_1.19.2ubuntu2 g++-8_8.2.0-12ubuntu1 gcc-8_8.2.0-12ubuntu1 libc6-dev_2.28-0ubuntu1 libstdc++-8-dev_8.2.0-12ubuntu1 libstdc++6_8.2.0-12ubuntu1 linux-libc-dev_4.19.0-8.9 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.8.0~alpha2ubuntu1 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1ubuntu8 base-passwd_3.5.45 bash_4.4.18-2ubuntu3 binutils_2.31.1-10ubuntu1 binutils-common_2.31.1-10ubuntu1 binutils-x86-64-linux-gnu_2.31.1-10ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu2 build-essential_12.5ubuntu2 bzip2_1.0.6-9 ca-certificates_20180409 cdbs_0.4.156ubuntu4 coreutils_8.28-1ubuntu2 cpp_4:8.2.0-2ubuntu2 cpp-8_8.2.0-12ubuntu1 dash_0.5.10.2-1 debconf_1.5.69 debhelper_11.5.3ubuntu1 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_1.0.0-1 dh-translations_143 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu4 dpkg_1.19.2ubuntu2 dpkg-dev_1.19.2ubuntu2 dwz_0.12-3 e2fslibs_1.44.4-2ubuntu1 e2fsprogs_1.44.4-2ubuntu1 fakeroot_1.23-1 fdisk_2.32-0.1ubuntu2 file_1:5.34-2 findutils_4.6.0+git+20181018-1 fontconfig_2.13.0-5ubuntu3 fontconfig-config_2.13.0-5ubuntu3 fonts-dejavu-core_2.37-1 g++_4:8.2.0-2ubuntu2 g++-8_8.2.0-12ubuntu1 gcc_4:8.2.0-2ubuntu2 gcc-8_8.2.0-12ubuntu1 gcc-8-base_8.2.0-12ubuntu1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gfortran_4:8.2.0-2ubuntu2 gfortran-8_8.2.0-12ubuntu1 gpg_2.2.8-3ubuntu1 gpg-agent_2.2.8-3ubuntu1 gpgconf_2.2.8-3ubuntu1 gpgv_2.2.8-3ubuntu1 grep_3.1-3 groff-base_1.22.3-10 gzip_1.6-5ubuntu2 hdf5-helpers_1.10.4+repack-1 hostname_3.21 icu-devtools_63.1-5 init_1.56 init-system-helpers_1.56 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool_0.51.0-5ubuntu1 intltool-debian_0.35.0+20060710.4 jq_1.5+dfsg-2build1 libacl1_2.2.52-3build1 libaec-dev_1.0.2-1 libaec0_1.0.2-1 libapparmor1_2.12-4ubuntu10 libapt-pkg5.0_1.8.0~alpha2ubuntu1 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.1 libasan5_8.2.0-12ubuntu1 libasn1-8-heimdal_7.5.0+dfsg-2.1 libassuan0_2.5.1-2 libatomic1_8.2.0-12ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.3-1ubuntu3 libaudit1_1:2.8.3-1ubuntu3 libbinutils_2.31.1-10ubuntu1 libblas-dev_3.8.0-2 libblas3_3.8.0-2 libblkid1_2.32-0.1ubuntu2 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libbz2-dev_1.0.6-9 libc-bin_2.28-0ubuntu1 libc-dev-bin_2.28-0ubuntu1 libc6_2.28-0ubuntu1 libc6-dev_2.28-0ubuntu1 libcairo2_1.16.0-1 libcap-ng0_0.7.9-1build1 libcap2_1:2.25-1.2 libcc1-0_8.2.0-12ubuntu1 libcom-err2_1.44.4-2ubuntu1 libcomerr2_1.44.4-2ubuntu1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.4-2ubuntu2 libcurl4_7.61.0-1ubuntu2.2 libdatrie1_0.2.12-1 libdb5.3_5.3.28+dfsg1-0.2 libdebconfclient0_0.244ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu4 libdpkg-perl_1.19.2ubuntu2 libelf1_0.175-1 libencode-locale-perl_1.05-1 libexpat1_2.2.6-1 libext2fs2_1.44.4-2ubuntu1 libfakeroot_1.23-1 libfdisk1_2.32-0.1ubuntu2 libffi6_3.2.1-9 libfile-listing-perl_6.04-1 libfile-stripnondeterminism-perl_1.0.0-1 libfile-which-perl_1.22-1 libfontconfig1_2.13.0-5ubuntu3 libfreetype6_2.8.1-2ubuntu2 libfribidi0_1.0.5-3 libgcc-8-dev_8.2.0-12ubuntu1 libgcc1_1:8.2.0-12ubuntu1 libgcrypt20_1.8.4-3ubuntu1 libgdbm-compat4_1.18.1-2 libgdbm5_1.14.1-6 libgdbm6_1.18.1-2 libgfortran-8-dev_8.2.0-12ubuntu1 libgfortran5_8.2.0-12ubuntu1 libglib2.0-0_2.58.1-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.4-2ubuntu2 libgomp1_8.2.0-12ubuntu1 libgpg-error0_1.32-3 libgraphite2-3_1.3.12-1 libgssapi-krb5-2_1.16.1-1ubuntu1 libgssapi3-heimdal_7.5.0+dfsg-2.1 libharfbuzz0b_2.1.1-1build1 libhcrypto4-heimdal_7.5.0+dfsg-2.1 libhdf5-103_1.10.4+repack-1 libhdf5-cpp-103_1.10.4+repack-1 libhdf5-dev_1.10.4+repack-1 libheimbase1-heimdal_7.5.0+dfsg-2.1 libheimntlm0-heimdal_7.5.0+dfsg-2.1 libhogweed4_3.4.1~rc1-1 libhtml-parser-perl_3.72-3build2 libhtml-tagset-perl_3.20-3 libhtml-tree-perl_5.07-1 libhttp-cookies-perl_6.04-1 libhttp-date-perl_6.02-1 libhttp-message-perl_6.18-1 libhttp-negotiate-perl_6.01-1 libhx509-5-heimdal_7.5.0+dfsg-2.1 libice6_2:1.0.9-2 libicu-dev_63.1-5 libicu63_63.1-5 libidn11_1.33-2.2ubuntu1 libidn2-0_2.0.5-1 libio-html-perl_1.001-1 libio-socket-ssl-perl_2.060-3 libip4tc0_1.6.1-2ubuntu3 libisl19_0.20-2 libitm1_8.2.0-12ubuntu1 libjbig0_2.1-3.1build1 libjpeg-dev_8c-2ubuntu8 libjpeg-turbo8_2.0.0-0ubuntu2 libjpeg-turbo8-dev_2.0.0-0ubuntu2 libjpeg8_8c-2ubuntu8 libjpeg8-dev_8c-2ubuntu8 libjq1_1.5+dfsg-2build1 libjson-c3_0.12.1-1.3 libk5crypto3_1.16.1-1ubuntu1 libkeyutils1_1.5.9-9.3 libkmod2_25-1ubuntu2 libkrb5-26-heimdal_7.5.0+dfsg-2.1 libkrb5-3_1.16.1-1ubuntu1 libkrb5support0_1.16.1-1ubuntu1 liblapack-dev_3.8.0-2 liblapack3_3.8.0-2 libldap-2.4-2_2.4.46+dfsg-5ubuntu3 libldap-common_2.4.46+dfsg-5ubuntu3 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblsan0_8.2.0-12ubuntu1 liblwp-mediatypes-perl_6.02-1 liblwp-protocol-https-perl_6.07-2 liblz4-1_1.8.2-1ubuntu1 liblzma-dev_5.2.2-1.3 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmount1_2.32-0.1ubuntu2 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.1-2 libmpx2_8.2.0-12ubuntu1 libncurses-dev_6.1+20180210-4ubuntu1 libncurses5-dev_6.1+20180210-4ubuntu1 libncurses6_6.1+20180210-4ubuntu1 libncursesw6_6.1+20180210-4ubuntu1 libnet-http-perl_6.18-1 libnet-ssleay-perl_1.85-2ubuntu3 libnettle6_3.4.1~rc1-1 libnghttp2-14_1.35.0-1 libnpth0_1.6-1 libonig5_6.9.0-1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpango-1.0-0_1.42.4-4 libpangocairo-1.0-0_1.42.4-4 libpangoft2-1.0-0_1.42.4-4 libpaper-utils_1.1.26 libpaper1_1.1.26 libpcre16-3_2:8.39-11 libpcre3_2:8.39-11 libpcre3-dev_2:8.39-11 libpcre32-3_2:8.39-11 libpcrecpp0v5_2:8.39-11 libperl5.26_5.26.2-7 libperl5.28_5.28.1-3 libpipeline1_1.5.0-2 libpixman-1-0_0.34.0-2 libpng-dev_1.6.34-2 libpng16-16_1.6.34-2 libprocps7_2:3.3.15-2ubuntu1 libpsl5_0.20.2-2 libpython3-stdlib_3.7.1-1ubuntu1 libpython3.7-minimal_3.7.2~rc1-1 libpython3.7-stdlib_3.7.2~rc1-1 libquadmath0_8.2.0-12ubuntu1 libreadline-dev_7.0-5 libreadline7_7.0-5 libroken18-heimdal_7.5.0+dfsg-2.1 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27~101-g0780600+dfsg-3ubuntu2 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3ubuntu2 libseccomp2_2.3.3-3ubuntu2 libselinux1_2.8-1build2 libsemanage-common_2.8-1build2 libsemanage1_2.8-1build2 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsm6_2:1.2.2-1 libsmartcols1_2.32-0.1ubuntu2 libsqlite3-0_3.26.0-3 libss2_1.44.4-2ubuntu1 libssl1.1_1.1.1a-1ubuntu2 libstdc++-8-dev_8.2.0-12ubuntu1 libstdc++6_8.2.0-12ubuntu1 libsystemd0_239-7ubuntu15 libsz2_1.0.2-1 libtasn1-6_4.13-3 libtcl8.6_8.6.8+dfsg-4 libthai-data_0.1.28-1 libthai0_0.1.28-1 libtiff5_4.0.10-3 libtimedate-perl_2.3000-2 libtinfo6_6.1+20180210-4ubuntu1 libtk8.6_8.6.8-4 libtool_2.4.6-6 libtry-tiny-perl_0.30-1 libtsan0_8.2.0-12ubuntu1 libubsan1_8.2.0-12ubuntu1 libudev1_239-7ubuntu15 libunistring2_0.9.10-1ubuntu1 liburi-perl_1.74-1 libusb-0.1-4_2:0.1.12-32 libuuid1_2.32-0.1ubuntu2 libwebp6_0.6.1-2 libwind0-heimdal_7.5.0+dfsg-2.1 libwww-perl_6.36-1 libwww-robotrules-perl_6.02-1 libx11-6_2:1.6.7-1 libx11-data_2:1.6.7-1 libxau6_1:1.0.8-1 libxcb-render0_1.13.1-1 libxcb-shm0_1.13.1-1 libxcb1_1.13.1-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1 libxft2_2.3.2-2 libxml-parser-perl_2.44-2build4 libxml2_2.9.4+dfsg1-7ubuntu3 libxmuu1_2:1.1.2-2 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.1.5-1 libzstd1_1.3.5+dfsg-1ubuntu1 linux-libc-dev_4.19.0-8.9 lockfile-progs_0.1.18 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.4-3 mawk_1.3.3-17ubuntu3 mime-support_3.60ubuntu1 mount_2.32-0.1ubuntu2 multiarch-support_2.28-0ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 netbase_5.5 openssl_1.1.1a-1ubuntu2 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-3 perl_5.28.1-3 perl-base_5.28.1-3 perl-modules-5.26_5.26.2-7 perl-modules-5.28_5.28.1-3 perl-openssl-defaults_3build1 pinentry-curses_1.1.0-1build2 pkg-config_0.29.1-0ubuntu2 pkgbinarymangler_143 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 python3_3.7.1-1ubuntu1 python3-minimal_3.7.1-1ubuntu1 python3-pkg-resources_40.6.2-1 python3-scour_0.37-1 python3-six_1.12.0-1 python3.7_3.7.2~rc1-1 python3.7-minimal_3.7.2~rc1-1 r-base-core_3.5.1-2 r-base-dev_3.5.1-2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-cran-hdf5-dummy_0.invalid.0 scour_0.37-1 sed_4.5-2 sensible-utils_0.0.12 systemd_239-7ubuntu15 systemd-sysv_239-7ubuntu15 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu2 tar_1.30+dfsg-3 tzdata_2018g-1 ubuntu-keyring_2018.09.18.1 ucf_3.0038 unzip_6.0-21ubuntu1 util-linux_2.32-0.1ubuntu2 x11-common_1:7.7+19ubuntu8 xauth_1:1.0.10-1 xdg-utils_1.1.3-1ubuntu2 xz-utils_5.2.2-1.3 zip_3.0-11build1 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Wed Dec 12 10:30:24 2018 UTC gpgv: using RSA key 92978A6E195E4921825F7FF0F34F09744E9F5DD9 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-cran-hdf5_1.6.10-4.1build2.dsc dpkg-source: info: extracting r-cran-hdf5 in r-cran-hdf5-1.6.10 dpkg-source: info: unpacking r-cran-hdf5_1.6.10.orig.tar.gz dpkg-source: info: unpacking r-cran-hdf5_1.6.10-4.1build2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying with-hdf5.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-15767324 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-15767324 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-15767324 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package r-cran-hdf5 dpkg-buildpackage: info: source version 1.6.10-4.1build2 dpkg-buildpackage: info: source distribution disco dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean test -x debian/rules dh_clean if test -d src; then \ find src -regex ".*\.o" | \ xargs --no-run-if-empty -r rm; \ fi rm -f config.log config.status debian/rules build test -x debian/rules mkdir -p "." fakeroot debian/rules binary test -x debian/rules dh_testroot dh_prep dh_installdirs -A mkdir -p "." dh_installdirs usr/lib/R/site-library echo "R:Depends=r-base-core (>= 3.5.1-2), r-api-3.5" >> debian/r-cran-hdf5.substvars if test -f /usr/bin/xvfb-run; then \ xvfb-run -a -n 20 \ -s "-screen 0 1024x768x24 -ac +extension GLX +render -noreset" \ R CMD INSTALL -l /<>/debian/r-cran-hdf5/usr/lib/R/site-library --clean \ "--configure-args=--with-hdf5=/usr/lib/x86_64-linux-gnu/hdf5/serial" . \ "--built-timestamp=\"Wed, 12 Dec 2018 11:30:23 +0100\"" \ ; \ else \ R CMD INSTALL -l /<>/debian/r-cran-hdf5/usr/lib/R/site-library \ --clean "--configure-args=--with-hdf5=/usr/lib/x86_64-linux-gnu/hdf5/serial" . \ "--built-timestamp=\"Wed, 12 Dec 2018 11:30:23 +0100\"" \ ; \ fi * installing *source* package ‘hdf5’ ... checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking for library containing inflate... -lz checking for library containing H5open... -lhdf5 checking for sufficiently new HDF5... yes configure: creating ./config.status config.status: creating src/Makevars ** libs make[1]: Entering directory '/<>/src' gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/hdf5/serial/include -fpic -g -O2 -fdebug-prefix-map=/build/r-base-0IWVqQ/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hdf5.c -o hdf5.o gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o hdf5.so hdf5.o -Wl,-L,/usr/lib/x86_64-linux-gnu/hdf5/serial/lib -lhdf5 -lz -lm -L/usr/lib/R/lib -lR make[1]: Leaving directory '/<>/src' make[1]: Entering directory '/<>/src' make[1]: Leaving directory '/<>/src' installing to /<>/debian/r-cran-hdf5/usr/lib/R/site-library/hdf5/libs ** R ** byte-compile and prepare package for lazy loading ** help Warning: /<>/man/hdf5.Rd:9-13: Section \synopsis is unrecognized and will be dropped *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (hdf5) rm -vf /<>/debian/r-cran-hdf5/usr/lib/R/site-library/R.css \ /<>/debian/r-cran-hdf5/usr/lib/R/site-library/hdf5/COPYING \ /<>/debian/r-cran-hdf5/usr/lib/R/site-library/hdf5/LICENSE.txt \ /<>/debian/r-cran-hdf5/usr/lib/R/site-library/hdf5/LICENSE if test -f debian/overrides; then \ install -d /<>/debian/r-cran-hdf5/usr/share/lintian/overrides ; \ install -m 0644 debian/overrides \ /<>/debian/r-cran-hdf5/usr/share/lintian/overrides/r-cran-hdf5; \ fi Adding cdbs dependencies to debian/r-cran-hdf5.substvars dh_installdirs -pr-cran-hdf5 \ dh_installdocs -pr-cran-hdf5 dh_installexamples -pr-cran-hdf5 dh_installman -pr-cran-hdf5 dh_installinfo -pr-cran-hdf5 dh_installmenu -pr-cran-hdf5 dh_installcron -pr-cran-hdf5 dh_systemd_enable -pr-cran-hdf5 dh_installinit -pr-cran-hdf5 dh_installdebconf -pr-cran-hdf5 dh_installemacsen -pr-cran-hdf5 dh_installcatalogs -pr-cran-hdf5 dh_installpam -pr-cran-hdf5 dh_installlogrotate -pr-cran-hdf5 dh_installlogcheck -pr-cran-hdf5 dh_installchangelogs -pr-cran-hdf5 ./ChangeLog dh_installudev -pr-cran-hdf5 dh_lintian -pr-cran-hdf5 dh_bugfiles -pr-cran-hdf5 dh_install -pr-cran-hdf5 dh_systemd_start -pr-cran-hdf5 dh_link -pr-cran-hdf5 dh_installmime -pr-cran-hdf5 dh_installgsettings -pr-cran-hdf5 dh_strip -pr-cran-hdf5 dh_strip_nondeterminism -pr-cran-hdf5 dh_compress -pr-cran-hdf5 dh_fixperms -pr-cran-hdf5 dh_makeshlibs -pr-cran-hdf5 dh_installdeb -pr-cran-hdf5 dh_perl -pr-cran-hdf5 dh_shlibdeps -pr-cran-hdf5 dh_gencontrol -pr-cran-hdf5 # only call dh_scour for packages in main if grep -q '^Component:[[:space:]]*main' /CurrentlyBuilding 2>/dev/null; then dh_scour -pr-cran-hdf5 ; fi dh_md5sums -pr-cran-hdf5 dh_builddeb -pr-cran-hdf5 INFO: pkgstriptranslations version 143 INFO: pkgstriptranslations version 143 pkgstriptranslations: processing r-cran-hdf5 (in debian/r-cran-hdf5); do_strip: , oemstrip: pkgstriptranslations: processing r-cran-hdf5-dbgsym (in debian/.debhelper/r-cran-hdf5/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/r-cran-hdf5/dbgsym-root/DEBIAN/control, package r-cran-hdf5-dbgsym, directory debian/.debhelper/r-cran-hdf5/dbgsym-root dpkg-deb: building package 'r-cran-hdf5-dbgsym' in 'debian/.debhelper/scratch-space/build-r-cran-hdf5/r-cran-hdf5-dbgsym_1.6.10-4.1build2_amd64.deb'. pkgstripfiles: processing control file: debian/r-cran-hdf5/DEBIAN/control, package r-cran-hdf5, directory debian/r-cran-hdf5 .. removing usr/share/doc/r-cran-hdf5/changelog.gz Renaming r-cran-hdf5-dbgsym_1.6.10-4.1build2_amd64.deb to r-cran-hdf5-dbgsym_1.6.10-4.1build2_amd64.ddeb pkgstripfiles: Truncating usr/share/doc/r-cran-hdf5/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-cran-hdf5 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-cran-hdf5' in '../r-cran-hdf5_1.6.10-4.1build2_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../r-cran-hdf5_1.6.10-4.1build2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20181212-1047 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-cran-hdf5_1.6.10-4.1build2_amd64.changes: ------------------------------------------- Format: 1.8 Date: Wed, 12 Dec 2018 11:30:23 +0100 Source: r-cran-hdf5 Binary: r-cran-hdf5 Architecture: amd64 Version: 1.6.10-4.1build2 Distribution: disco-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Gianfranco Costamagna Description: r-cran-hdf5 - GNU R package interfacing the NCSA HDF5 library Changes: r-cran-hdf5 (1.6.10-4.1build2) disco; urgency=medium . * Rebuild against new libhdf5-103. Checksums-Sha1: cc0fd626b82838733ad90d5843b11f5f28ce34b8 42996 r-cran-hdf5-dbgsym_1.6.10-4.1build2_amd64.ddeb c125e04344a007b7362565d7840551c46763b02b 10035 r-cran-hdf5_1.6.10-4.1build2_amd64.buildinfo 828c08a15c6187bd5e5854cfdf90d69a108f64a6 29448 r-cran-hdf5_1.6.10-4.1build2_amd64.deb Checksums-Sha256: 914bdb94290cef7a8b280a2f349218d9747e20402efd0aca5d18f3a0e8646090 42996 r-cran-hdf5-dbgsym_1.6.10-4.1build2_amd64.ddeb 1ef31ec3289bf795bff64e708540938082e3f2acf79df4d6037c4f62a81da23c 10035 r-cran-hdf5_1.6.10-4.1build2_amd64.buildinfo 57a57252df7b37bc704ed6fc44381df228421ce89b3060160daf35be1e5f803d 29448 r-cran-hdf5_1.6.10-4.1build2_amd64.deb Files: 20145b01f40f025cd75b60f75a2a2ca1 42996 debug optional r-cran-hdf5-dbgsym_1.6.10-4.1build2_amd64.ddeb edadab3d5134b570e09bd1163d205fe0 10035 gnu-r optional r-cran-hdf5_1.6.10-4.1build2_amd64.buildinfo ea4937405ea8bf1bf03798d682cd7fee 29448 gnu-r optional r-cran-hdf5_1.6.10-4.1build2_amd64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-cran-hdf5_1.6.10-4.1build2_amd64.deb -------------------------------------- new debian package, version 2.0. size 29448 bytes: control archive=1328 bytes. 616 bytes, 14 lines control 1657 bytes, 22 lines md5sums Package: r-cran-hdf5 Version: 1.6.10-4.1build2 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Dirk Eddelbuettel Installed-Size: 90 Depends: libc6 (>= 2.14), libhdf5-103, r-base-core (>= 3.5.1-2), r-api-3.5 Section: gnu-r Priority: optional Description: GNU R package interfacing the NCSA HDF5 library This package provides the functions hdf5save and hdf5load which allow saving and loading of R variables in the Hierarchical Data Format (HDF) format. Lists, strings, vectors, matrices and higher-dimensional arrays are supported. drwxr-xr-x root/root 0 2018-12-12 10:30 ./ drwxr-xr-x root/root 0 2018-12-12 10:30 ./usr/ drwxr-xr-x root/root 0 2018-12-12 10:30 ./usr/lib/ drwxr-xr-x root/root 0 2018-12-12 10:30 ./usr/lib/R/ drwxr-xr-x root/root 0 2018-12-12 10:30 ./usr/lib/R/site-library/ drwxr-xr-x root/root 0 2018-12-12 10:30 ./usr/lib/R/site-library/hdf5/ -rw-r--r-- root/root 378 2018-12-12 10:30 ./usr/lib/R/site-library/hdf5/DESCRIPTION -rw-r--r-- root/root 54 2018-12-12 10:30 ./usr/lib/R/site-library/hdf5/INDEX drwxr-xr-x root/root 0 2018-12-12 10:30 ./usr/lib/R/site-library/hdf5/Meta/ -rw-r--r-- root/root 267 2018-12-12 10:30 ./usr/lib/R/site-library/hdf5/Meta/Rd.rds -rw-r--r-- root/root 113 2018-12-12 10:30 ./usr/lib/R/site-library/hdf5/Meta/features.rds -rw-r--r-- root/root 314 2018-12-12 10:30 ./usr/lib/R/site-library/hdf5/Meta/hsearch.rds -rw-r--r-- root/root 132 2018-12-12 10:30 ./usr/lib/R/site-library/hdf5/Meta/links.rds -rw-r--r-- root/root 207 2018-12-12 10:30 ./usr/lib/R/site-library/hdf5/Meta/nsInfo.rds -rw-r--r-- root/root 558 2018-12-12 10:30 ./usr/lib/R/site-library/hdf5/Meta/package.rds -rw-r--r-- root/root 38 2018-12-12 10:30 ./usr/lib/R/site-library/hdf5/NAMESPACE drwxr-xr-x root/root 0 2018-12-12 10:30 ./usr/lib/R/site-library/hdf5/R/ -rw-r--r-- root/root 1056 2018-12-12 10:30 ./usr/lib/R/site-library/hdf5/R/hdf5 -rw-r--r-- root/root 2748 2018-12-12 10:30 ./usr/lib/R/site-library/hdf5/R/hdf5.rdb -rw-r--r-- root/root 320 2018-12-12 10:30 ./usr/lib/R/site-library/hdf5/R/hdf5.rdx drwxr-xr-x root/root 0 2018-12-12 10:30 ./usr/lib/R/site-library/hdf5/help/ -rw-r--r-- root/root 45 2018-12-12 10:30 ./usr/lib/R/site-library/hdf5/help/AnIndex -rw-r--r-- root/root 96 2018-12-12 10:30 ./usr/lib/R/site-library/hdf5/help/aliases.rds -rw-r--r-- root/root 4810 2018-12-12 10:30 ./usr/lib/R/site-library/hdf5/help/hdf5.rdb -rw-r--r-- root/root 147 2018-12-12 10:30 ./usr/lib/R/site-library/hdf5/help/hdf5.rdx -rw-r--r-- root/root 110 2018-12-12 10:30 ./usr/lib/R/site-library/hdf5/help/paths.rds drwxr-xr-x root/root 0 2018-12-12 10:30 ./usr/lib/R/site-library/hdf5/html/ -rw-r--r-- root/root 1214 2018-12-12 10:30 ./usr/lib/R/site-library/hdf5/html/00Index.html -rw-r--r-- root/root 1335 2018-12-12 10:30 ./usr/lib/R/site-library/hdf5/html/R.css drwxr-xr-x root/root 0 2018-12-12 10:30 ./usr/lib/R/site-library/hdf5/libs/ -rw-r--r-- root/root 43728 2018-12-12 10:30 ./usr/lib/R/site-library/hdf5/libs/hdf5.so drwxr-xr-x root/root 0 2018-12-12 10:30 ./usr/share/ drwxr-xr-x root/root 0 2018-12-12 10:30 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-12-12 10:30 ./usr/share/doc/r-cran-hdf5/ -rw-r--r-- root/root 953 2018-12-12 10:30 ./usr/share/doc/r-cran-hdf5/changelog.Debian.gz -rw-r--r-- root/root 915 2008-06-16 21:10 ./usr/share/doc/r-cran-hdf5/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 848 Build-Time: 32 Distribution: disco-proposed Host Architecture: amd64 Install-Time: 80 Job: r-cran-hdf5_1.6.10-4.1build2.dsc Machine Architecture: amd64 Package: r-cran-hdf5 Package-Time: 115 Source-Version: 1.6.10-4.1build2 Space: 848 Status: successful Version: 1.6.10-4.1build2 -------------------------------------------------------------------------------- Finished at 20181212-1047 Build needed 00:01:55, 848k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=disco --arch=amd64 PACKAGEBUILD-15767324 Scanning for processes to kill in build PACKAGEBUILD-15767324