RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '1546291-3157229', '/home/buildd/filecache-default/f1f10b8402ed686aaf0307676c76f07b45af2a09'] Synching the system clock with the buildd NTP service... 6 Mar 08:56:19 ntpdate[18494]: adjust time server 10.211.37.1 offset -0.001172 sec Unpacking chroot for build 1546291-3157229 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '1546291-3157229'] Mounting chroot for build 1546291-3157229 RUN: /usr/share/launchpad-buildd/slavebin/apply-ogre-model ['apply-ogre-model', '1546291-3157229', 'universe'] Attempting OGRE for universe in build-1546291-3157229 No OGRE sources.list found. RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '1546291-3157229', 'deb http://ftpmaster.internal/ubuntu lucid main universe'] Overriding sources.list in build-1546291-3157229 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '1546291-3157229'] Updating debian chroot for build 1546291-3157229 Get:1 http://ftpmaster.internal lucid Release.gpg [189B] Get:2 http://ftpmaster.internal lucid Release [57.2kB] Get:3 http://ftpmaster.internal lucid/main Packages [1391kB] Get:4 http://ftpmaster.internal lucid/universe Packages [5530kB] Fetched 6978kB in 7s (904kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: build-essential coreutils cpio cpp-4.4 e2fslibs e2fsprogs findutils g++-4.4 gcc-4.4 gcc-4.4-base grep initramfs-tools initramfs-tools-bin libc-bin libc-dev-bin libc6 libc6-dev libcomerr2 libgcc1 libgmp3c2 libgomp1 libplymouth2 libslang2 libss2 libstdc++6 libstdc++6-4.4-dev linux-libc-dev locales lsb-base mountall upstart 31 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 32.7MB of archives. After this operation, 45.1kB disk space will be freed. WARNING: The following packages cannot be authenticated! coreutils libc-dev-bin libc6-dev libc-bin libc6 linux-libc-dev libgomp1 cpp-4.4 gcc-4.4-base libgcc1 gcc-4.4 g++-4.4 libstdc++6-4.4-dev libstdc++6 libgmp3c2 findutils e2fslibs e2fsprogs grep initramfs-tools initramfs-tools-bin cpio mountall libcomerr2 libslang2 libss2 lsb-base libplymouth2 locales upstart build-essential Authentication warning overridden. Get:1 http://ftpmaster.internal lucid/main coreutils 7.4-2ubuntu2 [2384kB] Get:2 http://ftpmaster.internal lucid/main libc-dev-bin 2.11.1-0ubuntu4 [212kB] Get:3 http://ftpmaster.internal lucid/main libc6-dev 2.11.1-0ubuntu4 [4823kB] Get:4 http://ftpmaster.internal lucid/main libc-bin 2.11.1-0ubuntu4 [721kB] Get:5 http://ftpmaster.internal lucid/main libc6 2.11.1-0ubuntu4 [3778kB] Get:6 http://ftpmaster.internal lucid/main linux-libc-dev 2.6.32-15.22 [752kB] Get:7 http://ftpmaster.internal lucid/main libgomp1 4.4.3-3ubuntu1 [24.2kB] Get:8 http://ftpmaster.internal lucid/main cpp-4.4 4.4.3-3ubuntu1 [3548kB] Get:9 http://ftpmaster.internal lucid/main gcc-4.4-base 4.4.3-3ubuntu1 [117kB] Get:10 http://ftpmaster.internal lucid/main libgcc1 1:4.4.3-3ubuntu1 [55.0kB] Get:11 http://ftpmaster.internal lucid/main gcc-4.4 4.4.3-3ubuntu1 [2982kB] Get:12 http://ftpmaster.internal lucid/main g++-4.4 4.4.3-3ubuntu1 [4712kB] Get:13 http://ftpmaster.internal lucid/main libstdc++6-4.4-dev 4.4.3-3ubuntu1 [1491kB] Get:14 http://ftpmaster.internal lucid/main libstdc++6 4.4.3-3ubuntu1 [348kB] Get:15 http://ftpmaster.internal lucid/main libgmp3c2 2:4.3.2+dfsg-1ubuntu1 [331kB] Get:16 http://ftpmaster.internal lucid/main findutils 4.4.2-1build1 [391kB] Get:17 http://ftpmaster.internal lucid/main e2fslibs 1.41.10-1ubuntu2 [139kB] Get:18 http://ftpmaster.internal lucid/main e2fsprogs 1.41.10-1ubuntu2 [790kB] Get:19 http://ftpmaster.internal lucid/main grep 2.5.4-4build1 [224kB] Get:20 http://ftpmaster.internal lucid/main initramfs-tools 0.92bubuntu67 [86.4kB] Get:21 http://ftpmaster.internal lucid/main initramfs-tools-bin 0.92bubuntu67 [51.2kB] Get:22 http://ftpmaster.internal lucid/main cpio 2.10-1ubuntu2 [112kB] Get:23 http://ftpmaster.internal lucid/main mountall 2.7 [48.0kB] Get:24 http://ftpmaster.internal lucid/main libcomerr2 1.41.10-1ubuntu2 [49.7kB] Get:25 http://ftpmaster.internal lucid/main libslang2 2.2.2-2ubuntu1 [506kB] Get:26 http://ftpmaster.internal lucid/main libss2 1.41.10-1ubuntu2 [54.8kB] Get:27 http://ftpmaster.internal lucid/main lsb-base 4.0-0ubuntu8 [25.6kB] Get:28 http://ftpmaster.internal lucid/main libplymouth2 0.8.0~-12 [75.6kB] Get:29 http://ftpmaster.internal lucid/main locales 2.11+git20100304-1 [3552kB] Get:30 http://ftpmaster.internal lucid/main upstart 0.6.5-4 [288kB] Get:31 http://ftpmaster.internal lucid/main build-essential 11.4build1 [7278B] debconf: delaying package configuration, since apt-utils is not installed Fetched 32.7MB in 1s (20.5MB/s) (Reading database ... 13340 files and directories currently installed.) Preparing to replace coreutils 7.4-2ubuntu1 (using .../coreutils_7.4-2ubuntu2_i386.deb) ... Unpacking replacement coreutils ... Setting up coreutils (7.4-2ubuntu2) ... (Reading database ... 13340 files and directories currently installed.) Preparing to replace libc-dev-bin 2.11.1-0ubuntu2 (using .../libc-dev-bin_2.11.1-0ubuntu4_i386.deb) ... Unpacking replacement libc-dev-bin ... Preparing to replace libc6-dev 2.11.1-0ubuntu2 (using .../libc6-dev_2.11.1-0ubuntu4_i386.deb) ... Unpacking replacement libc6-dev ... Preparing to replace libc-bin 2.11.1-0ubuntu2 (using .../libc-bin_2.11.1-0ubuntu4_i386.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.11.1-0ubuntu4) ... (Reading database ... 13340 files and directories currently installed.) Preparing to replace libc6 2.11.1-0ubuntu2 (using .../libc6_2.11.1-0ubuntu4_i386.deb) ... Unpacking replacement libc6 ... Setting up libc6 (2.11.1-0ubuntu4) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13340 files and directories currently installed.) Preparing to replace linux-libc-dev 2.6.32-14.20 (using .../linux-libc-dev_2.6.32-15.22_i386.deb) ... Unpacking replacement linux-libc-dev ... Preparing to replace libgomp1 4.4.3-2ubuntu2 (using .../libgomp1_4.4.3-3ubuntu1_i386.deb) ... Unpacking replacement libgomp1 ... Preparing to replace cpp-4.4 4.4.3-2ubuntu2 (using .../cpp-4.4_4.4.3-3ubuntu1_i386.deb) ... Unpacking replacement cpp-4.4 ... Preparing to replace gcc-4.4-base 4.4.3-2ubuntu2 (using .../gcc-4.4-base_4.4.3-3ubuntu1_i386.deb) ... Unpacking replacement gcc-4.4-base ... Setting up gcc-4.4-base (4.4.3-3ubuntu1) ... (Reading database ... 13340 files and directories currently installed.) Preparing to replace libgcc1 1:4.4.3-2ubuntu2 (using .../libgcc1_1%3a4.4.3-3ubuntu1_i386.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.4.3-3ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13340 files and directories currently installed.) Preparing to replace gcc-4.4 4.4.3-2ubuntu2 (using .../gcc-4.4_4.4.3-3ubuntu1_i386.deb) ... Unpacking replacement gcc-4.4 ... Preparing to replace g++-4.4 4.4.3-2ubuntu2 (using .../g++-4.4_4.4.3-3ubuntu1_i386.deb) ... Unpacking replacement g++-4.4 ... Preparing to replace libstdc++6-4.4-dev 4.4.3-2ubuntu2 (using .../libstdc++6-4.4-dev_4.4.3-3ubuntu1_i386.deb) ... Unpacking replacement libstdc++6-4.4-dev ... Preparing to replace libstdc++6 4.4.3-2ubuntu2 (using .../libstdc++6_4.4.3-3ubuntu1_i386.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.4.3-3ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13340 files and directories currently installed.) Preparing to replace libgmp3c2 2:4.3.2+dfsg-1 (using .../libgmp3c2_2%3a4.3.2+dfsg-1ubuntu1_i386.deb) ... Unpacking replacement libgmp3c2 ... Preparing to replace findutils 4.4.2-1 (using .../findutils_4.4.2-1build1_i386.deb) ... install-info: warning: maintainer scripts should not call install-info anymore, install-info: warning: this is handled now by a dpkg trigger provided by the install-info: warning: install-info package; package findutils should be updated. Unpacking replacement findutils ... Setting up findutils (4.4.2-1build1) ... (Reading database ... 13340 files and directories currently installed.) Preparing to replace e2fslibs 1.41.10-1ubuntu1 (using .../e2fslibs_1.41.10-1ubuntu2_i386.deb) ... Unpacking replacement e2fslibs ... Setting up e2fslibs (1.41.10-1ubuntu2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13340 files and directories currently installed.) Preparing to replace e2fsprogs 1.41.10-1ubuntu1 (using .../e2fsprogs_1.41.10-1ubuntu2_i386.deb) ... Unpacking replacement e2fsprogs ... Setting up e2fsprogs (1.41.10-1ubuntu2) ... (Reading database ... 13340 files and directories currently installed.) Preparing to replace grep 2.5.4-4 (using .../grep_2.5.4-4build1_i386.deb) ... Unpacking replacement grep ... Setting up grep (2.5.4-4build1) ... (Reading database ... 13340 files and directories currently installed.) Preparing to replace initramfs-tools 0.92bubuntu66 (using .../initramfs-tools_0.92bubuntu67_all.deb) ... Unpacking replacement initramfs-tools ... Preparing to replace initramfs-tools-bin 0.92bubuntu66 (using .../initramfs-tools-bin_0.92bubuntu67_i386.deb) ... Unpacking replacement initramfs-tools-bin ... Preparing to replace cpio 2.10-1ubuntu1 (using .../cpio_2.10-1ubuntu2_i386.deb) ... Unpacking replacement cpio ... Preparing to replace mountall 2.5 (using .../archives/mountall_2.7_i386.deb) ... Unpacking replacement mountall ... Preparing to replace libcomerr2 1.41.10-1ubuntu1 (using .../libcomerr2_1.41.10-1ubuntu2_i386.deb) ... Unpacking replacement libcomerr2 ... Setting up libcomerr2 (1.41.10-1ubuntu2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13340 files and directories currently installed.) Preparing to replace libslang2 2.1.4-3 (using .../libslang2_2.2.2-2ubuntu1_i386.deb) ... Unpacking replacement libslang2 ... Setting up libslang2 (2.2.2-2ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13337 files and directories currently installed.) Preparing to replace libss2 1.41.10-1ubuntu1 (using .../libss2_1.41.10-1ubuntu2_i386.deb) ... Unpacking replacement libss2 ... Setting up libss2 (1.41.10-1ubuntu2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13337 files and directories currently installed.) Preparing to replace lsb-base 4.0-0ubuntu7 (using .../lsb-base_4.0-0ubuntu8_all.deb) ... Unpacking replacement lsb-base ... Setting up lsb-base (4.0-0ubuntu8) ... (Reading database ... 13337 files and directories currently installed.) Preparing to replace libplymouth2 0.8.0~-10ubuntu1 (using .../libplymouth2_0.8.0~-12_i386.deb) ... Unpacking replacement libplymouth2 ... Preparing to replace locales 2.9+git20090617-4 (using .../locales_2.11+git20100304-1_all.deb) ... Unpacking replacement locales ... Preparing to replace upstart 0.6.5-3 (using .../upstart_0.6.5-4_i386.deb) ... Unpacking replacement upstart ... Preparing to replace build-essential 11.4 (using .../build-essential_11.4build1_i386.deb) ... Unpacking replacement build-essential ... Setting up libc-dev-bin (2.11.1-0ubuntu4) ... Setting up linux-libc-dev (2.6.32-15.22) ... Setting up libc6-dev (2.11.1-0ubuntu4) ... Setting up libgomp1 (4.4.3-3ubuntu1) ... Setting up libgmp3c2 (2:4.3.2+dfsg-1ubuntu1) ... Setting up cpp-4.4 (4.4.3-3ubuntu1) ... Setting up gcc-4.4 (4.4.3-3ubuntu1) ... Setting up initramfs-tools-bin (0.92bubuntu67) ... Setting up cpio (2.10-1ubuntu2) ... install-info: warning: maintainer scripts should not call install-info anymore, install-info: warning: this is handled now by a dpkg trigger provided by the install-info: warning: install-info package; package cpio should be updated. Setting up initramfs-tools (0.92bubuntu67) ... update-initramfs: deferring update (trigger activated) Setting up libplymouth2 (0.8.0~-12) ... Setting up locales (2.11+git20100304-1) ... Setting up build-essential (11.4build1) ... Setting up mountall (2.7) ... Setting up upstart (0.6.5-4) ... Setting up libstdc++6-4.4-dev (4.4.3-3ubuntu1) ... Setting up g++-4.4 (4.4.3-3ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '1546291-3157229', 'lucid', '--nolog', '--batch', '--archive=ubuntu', '--dist=lucid', '-A', '--purpose=PRIMARY', '--comp=universe', 'r-cran-hdf5_1.6.9-2build1.dsc'] Initiating build 1546291-3157229 with 2 processor cores. Automatic build of r-cran-hdf5_1.6.9-2build1 on vernadsky by sbuild/i386 1.170.5 Build started at 20100306-0856 ****************************************************************************** r-cran-hdf5_1.6.9-2build1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>> 4.1.0), r-base-dev (>= 2.10.0), cdbs, libhdf5-serial-dev Checking for already installed source dependencies... debhelper: missing r-base-dev: missing cdbs: missing libhdf5-serial-dev: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper r-base-dev cdbs libhdf5-serial-dev Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autoconf automake autotools-dev bsdmainutils defoma dpatch fdupes file fontconfig fontconfig-config gettext gettext-base gfortran gfortran-4.4 groff-base html2text intltool intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libdirectfb-1.2-0 libexpat1 libfontconfig1 libfreetype6 libgfortran3 libhdf5-serial-1.8.4 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libice6 libjpeg62 libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev libnewt0.52 libpango1.0-0 libpango1.0-common libpaper-utils libpaper1 libpcre3-dev libpcrecpp0 libpixman-1-0 libpng12-dev libpopt0 libreadline-dev libreadline6-dev libsm6 libsysfs2 libthai-data libthai0 libtiff4 libts-0.0-0 liburi-perl libwww-perl libx11-6 libx11-data libxau6 libxcb-render-util0 libxcb-render0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2 libxrender1 libxss1 libxt6 m4 man-db po-debconf r-base-core tcl8.5 tk8.5 tsconf ttf-dejavu-core ucf unzip whiptail x11-common xdg-utils zip zlib1g-dev Suggested packages: autoconf2.13 autoconf-archive gnu-standards autoconf-doc libtool wamerican wordlist whois vacation devscripts doc-base dh-make defoma-doc psfontmgr x-ttcidfont-conf dfontmgr curl gettext-doc gfortran-multilib gfortran-doc gfortran-4.4-multilib gfortran-4.4-doc libgfortran3-dbg groff libhdf5-doc libdata-dump-perl ttf-japanese-gothic ttf-japanese-mincho ttf-thryomanes ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp libcrypt-ssleay-perl libio-socket-ssl-perl less www-browser libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline desktop-file-utils libgnome2-0 exo-utils libgnomevfs2-bin kdelibs4c2a konqueror libgtk2.0-bin Recommended packages: libfont-freetype-perl patchutils cvs libfribidi0 libmailtools-perl libhtml-format-perl xml-core libmail-sendmail-perl r-recommended r-doc-html xterm x-terminal-emulator x11-utils x11-xserver-utils mime-support shared-mime-info The following NEW packages will be installed: autoconf automake autotools-dev bsdmainutils cdbs debhelper defoma dpatch fdupes file fontconfig fontconfig-config gettext gettext-base gfortran gfortran-4.4 groff-base html2text intltool intltool-debian libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libdirectfb-1.2-0 libexpat1 libfontconfig1 libfreetype6 libgfortran3 libhdf5-serial-1.8.4 libhdf5-serial-dev libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libice6 libjpeg62 libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev libnewt0.52 libpango1.0-0 libpango1.0-common libpaper-utils libpaper1 libpcre3-dev libpcrecpp0 libpixman-1-0 libpng12-dev libpopt0 libreadline-dev libreadline6-dev libsm6 libsysfs2 libthai-data libthai0 libtiff4 libts-0.0-0 liburi-perl libwww-perl libx11-6 libx11-data libxau6 libxcb-render-util0 libxcb-render0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2 libxrender1 libxss1 libxt6 m4 man-db po-debconf r-base-core r-base-dev tcl8.5 tk8.5 tsconf ttf-dejavu-core ucf unzip whiptail x11-common xdg-utils zip zlib1g-dev 0 upgraded, 93 newly installed, 0 to remove and 0 not upgraded. Need to get 51.8MB of archives. After this operation, 148MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! x11-common libmagic1 file libnewt0.52 libpopt0 libxml2 ucf whiptail bsdmainutils gettext-base groff-base libsysfs2 tsconf libts-0.0-0 libdirectfb-1.2-0 libexpat1 libfreetype6 ttf-dejavu-core fontconfig-config libfontconfig1 libpixman-1-0 libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxcb-render0 libxcb-render-util0 libxrender1 libcairo2 liburi-perl libhtml-tagset-perl libhtml-parser-perl libhtml-tree-perl defoma fontconfig libpango1.0-common libdatrie1 libthai-data libthai0 libxft2 libpango1.0-0 libwww-perl libxext6 libxml-parser-perl man-db m4 autoconf autotools-dev automake html2text libcroco3 gettext intltool-debian po-debconf debhelper fdupes intltool cdbs dpatch libgfortran3 gfortran-4.4 gfortran libblas3gf libblas-dev libbz2-dev libhdf5-serial-1.8.4 zlib1g-dev libjpeg62 libjpeg62-dev libhdf5-serial-dev libice6 liblapack3gf liblapack-dev libncurses5-dev libpaper1 libpaper-utils libpcrecpp0 libpcre3-dev libpng12-dev libreadline6-dev libreadline-dev libsm6 libtiff4 libxss1 libxt6 zip unzip xdg-utils tcl8.5 tk8.5 r-base-core r-base-dev Authentication warning overridden. Get:1 http://ftpmaster.internal lucid/main x11-common 1:7.5+1ubuntu12 [307kB] Get:2 http://ftpmaster.internal lucid/main libmagic1 5.03-5 [392kB] Get:3 http://ftpmaster.internal lucid/main file 5.03-5 [47.2kB] Get:4 http://ftpmaster.internal lucid/main libnewt0.52 0.52.10-5ubuntu1 [53.7kB] Get:5 http://ftpmaster.internal lucid/main libpopt0 1.15-1 [31.4kB] Get:6 http://ftpmaster.internal lucid/main libxml2 2.7.6.dfsg-1ubuntu1 [827kB] Get:7 http://ftpmaster.internal lucid/main ucf 3.0025 [68.1kB] Get:8 http://ftpmaster.internal lucid/main whiptail 0.52.10-5ubuntu1 [38.6kB] Get:9 http://ftpmaster.internal lucid/main bsdmainutils 8.0.1ubuntu1 [191kB] Get:10 http://ftpmaster.internal lucid/main gettext-base 0.17-8ubuntu3 [70.5kB] Get:11 http://ftpmaster.internal lucid/main groff-base 1.20.1-7 [1090kB] Get:12 http://ftpmaster.internal lucid/main libsysfs2 2.1.0-6 [23.3kB] Get:13 http://ftpmaster.internal lucid/main tsconf 1.0-7 [12.7kB] Get:14 http://ftpmaster.internal lucid/main libts-0.0-0 1.0-7 [28.6kB] Get:15 http://ftpmaster.internal lucid/main libdirectfb-1.2-0 1.2.8-5ubuntu1 [1557kB] Get:16 http://ftpmaster.internal lucid/main libexpat1 2.0.1-7ubuntu1 [139kB] Get:17 http://ftpmaster.internal lucid/main libfreetype6 2.3.11-1ubuntu2 [418kB] Get:18 http://ftpmaster.internal lucid/main ttf-dejavu-core 2.30-2 [1436kB] Get:19 http://ftpmaster.internal lucid/main fontconfig-config 2.8.0-2ubuntu1 [205kB] Get:20 http://ftpmaster.internal lucid/main libfontconfig1 2.8.0-2ubuntu1 [98.9kB] Get:21 http://ftpmaster.internal lucid/main libpixman-1-0 0.16.4-1 [236kB] Get:22 http://ftpmaster.internal lucid/main libxau6 1:1.0.5-1 [13.9kB] Get:23 http://ftpmaster.internal lucid/main libxdmcp6 1:1.0.3-1 [18.2kB] Get:24 http://ftpmaster.internal lucid/main libxcb1 1.5-2 [39.4kB] Get:25 http://ftpmaster.internal lucid/main libx11-data 2:1.3.2-1ubuntu3 [220kB] Get:26 http://ftpmaster.internal lucid/main libx11-6 2:1.3.2-1ubuntu3 [816kB] Get:27 http://ftpmaster.internal lucid/main libxcb-render0 1.5-2 [14.5kB] Get:28 http://ftpmaster.internal lucid/main libxcb-render-util0 0.3.6-1 [9880B] Get:29 http://ftpmaster.internal lucid/main libxrender1 1:0.9.5-1 [27.1kB] Get:30 http://ftpmaster.internal lucid/main libcairo2 1.8.10-2ubuntu1 [518kB] Get:31 http://ftpmaster.internal lucid/main liburi-perl 1.52-1 [96.8kB] Get:32 http://ftpmaster.internal lucid/main libhtml-tagset-perl 3.20-2 [13.5kB] Get:33 http://ftpmaster.internal lucid/main libhtml-parser-perl 3.64-1 [113kB] Get:34 http://ftpmaster.internal lucid/main libhtml-tree-perl 3.23-1 [209kB] Get:35 http://ftpmaster.internal lucid/main defoma 0.11.10-4 [101kB] Get:36 http://ftpmaster.internal lucid/main fontconfig 2.8.0-2ubuntu1 [156kB] Get:37 http://ftpmaster.internal lucid/main libpango1.0-common 1.26.2-1 [104kB] Get:38 http://ftpmaster.internal lucid/main libdatrie1 0.2.2-3 [24.5kB] Get:39 http://ftpmaster.internal lucid/main libthai-data 0.1.13-1 [196kB] Get:40 http://ftpmaster.internal lucid/main libthai0 0.1.13-1 [39.5kB] Get:41 http://ftpmaster.internal lucid/main libxft2 2.1.14-1ubuntu1 [51.9kB] Get:42 http://ftpmaster.internal lucid/main libpango1.0-0 1.26.2-1 [297kB] Get:43 http://ftpmaster.internal lucid/main libwww-perl 5.834-1 [401kB] Get:44 http://ftpmaster.internal lucid/main libxext6 2:1.1.1-2 [39.6kB] Get:45 http://ftpmaster.internal lucid/main libxml-parser-perl 2.36-1.1build2 [323kB] Get:46 http://ftpmaster.internal lucid/main man-db 2.5.7-2 [1082kB] Get:47 http://ftpmaster.internal lucid/main m4 1.4.13-3 [241kB] Get:48 http://ftpmaster.internal lucid/main autoconf 2.65-3ubuntu1 [772kB] Get:49 http://ftpmaster.internal lucid/main autotools-dev 20090611.1 [64.1kB] Get:50 http://ftpmaster.internal lucid/main automake 1:1.11.1-1 [608kB] Get:51 http://ftpmaster.internal lucid/main html2text 1.3.2a-14build1 [101kB] Get:52 http://ftpmaster.internal lucid/main libcroco3 0.6.2-1 [92.5kB] Get:53 http://ftpmaster.internal lucid/main gettext 0.17-8ubuntu3 [1732kB] Get:54 http://ftpmaster.internal lucid/main intltool-debian 0.35.0+20060710.1 [31.6kB] Get:55 http://ftpmaster.internal lucid/main po-debconf 1.0.16 [224kB] Get:56 http://ftpmaster.internal lucid/main debhelper 7.4.15ubuntu1 [461kB] Get:57 http://ftpmaster.internal lucid/main fdupes 1.50-PR2-2build1 [19.0kB] Get:58 http://ftpmaster.internal lucid/main intltool 0.41.0-0ubuntu1 [52.5kB] Get:59 http://ftpmaster.internal lucid/main cdbs 0.4.62+nmu1ubuntu4 [1023kB] Get:60 http://ftpmaster.internal lucid/main dpatch 2.0.31 [88.4kB] Get:61 http://ftpmaster.internal lucid/main libgfortran3 4.4.3-3ubuntu1 [239kB] Get:62 http://ftpmaster.internal lucid/main gfortran-4.4 4.4.3-3ubuntu1 [4029kB] Get:63 http://ftpmaster.internal lucid/main gfortran 4:4.4.2-3ubuntu1 [1198B] Get:64 http://ftpmaster.internal lucid/main libblas3gf 1.2-2build1 [211kB] Get:65 http://ftpmaster.internal lucid/main libblas-dev 1.2-2build1 [218kB] Get:66 http://ftpmaster.internal lucid/main libbz2-dev 1.0.5-4 [31.7kB] Get:67 http://ftpmaster.internal lucid/universe libhdf5-serial-1.8.4 1.8.4-5 [1157kB] Get:68 http://ftpmaster.internal lucid/main zlib1g-dev 1:1.2.3.3.dfsg-15ubuntu1 [162kB] Get:69 http://ftpmaster.internal lucid/main libjpeg62 6b-15 [87.6kB] Get:70 http://ftpmaster.internal lucid/main libjpeg62-dev 6b-15 [188kB] Get:71 http://ftpmaster.internal lucid/universe libhdf5-serial-dev 1.8.4-5 [2086kB] Get:72 http://ftpmaster.internal lucid/main libice6 2:1.0.6-1 [50.5kB] Get:73 http://ftpmaster.internal lucid/main liblapack3gf 3.2.1-2 [3089kB] Get:74 http://ftpmaster.internal lucid/main liblapack-dev 3.2.1-2 [3241kB] Get:75 http://ftpmaster.internal lucid/main libncurses5-dev 5.7+20090803-2ubuntu2 [1564kB] Get:76 http://ftpmaster.internal lucid/main libpaper1 1.1.23+nmu1 [20.6kB] Get:77 http://ftpmaster.internal lucid/main libpaper-utils 1.1.23+nmu1 [17.8kB] Get:78 http://ftpmaster.internal lucid/main libpcrecpp0 7.8-3 [98.2kB] Get:79 http://ftpmaster.internal lucid/main libpcre3-dev 7.8-3 [258kB] Get:80 http://ftpmaster.internal lucid/main libpng12-dev 1.2.42-1ubuntu1 [261kB] Get:81 http://ftpmaster.internal lucid/main libreadline6-dev 6.1-1 [234kB] Get:82 http://ftpmaster.internal lucid/main libreadline-dev 6.1-1 [904B] Get:83 http://ftpmaster.internal lucid/main libsm6 2:1.1.1-1 [24.3kB] Get:84 http://ftpmaster.internal lucid/main libtiff4 3.9.2-2 [135kB] Get:85 http://ftpmaster.internal lucid/main libxss1 1:1.2.0-2 [13.3kB] Get:86 http://ftpmaster.internal lucid/main libxt6 1:1.0.7-1 [176kB] Get:87 http://ftpmaster.internal lucid/main zip 3.0-2 [318kB] Get:88 http://ftpmaster.internal lucid/main unzip 6.0-1 [181kB] Get:89 http://ftpmaster.internal lucid/main xdg-utils 1.0.2-6.1ubuntu2 [54.2kB] Get:90 http://ftpmaster.internal lucid/main tcl8.5 8.5.8-2 [1570kB] Get:91 http://ftpmaster.internal lucid/main tk8.5 8.5.8-1 [1128kB] Get:92 http://ftpmaster.internal lucid/universe r-base-core 2.10.1-2 [13.3MB] Get:93 http://ftpmaster.internal lucid/universe r-base-dev 2.10.1-2 [3538B] debconf: delaying package configuration, since apt-utils is not installed Fetched 51.8MB in 3s (16.7MB/s) Selecting previously deselected package x11-common. 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Setting up liburi-perl (1.52-1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.64-1) ... Setting up libhtml-tree-perl (3.23-1) ... Setting up defoma (0.11.10-4) ... Setting up fontconfig (2.8.0-2ubuntu1) ... Updating font configuration of fontconfig... Cleaning up category cid.. Cleaning up category truetype.. Cleaning up category type1.. Updating category type1.. Updating category truetype.. Updating category cid.. Cleaning up old fontconfig caches... done. Regenerating fonts cache... done. Setting up libpango1.0-common (1.26.2-1) ... Cleaning up font configuration of pango... Updating font configuration of pango... Cleaning up category xfont.. Updating category xfont.. *** You don't have any defomized font packages. *** So we are trying to force to generate pangox.aliases... Setting up libdatrie1 (0.2.2-3) ... Setting up libthai-data (0.1.13-1) ... Setting up libthai0 (0.1.13-1) ... Setting up libxft2 (2.1.14-1ubuntu1) ... Setting up libpango1.0-0 (1.26.2-1) ... Setting up libwww-perl (5.834-1) ... Setting up libxext6 (2:1.1.1-2) ... Setting up libxml-parser-perl (2.36-1.1build2) ... Setting up man-db (2.5.7-2) ... Building database of manual pages ... Setting up m4 (1.4.13-3) ... Setting up autoconf (2.65-3ubuntu1) ... Setting up autotools-dev (20090611.1) ... Setting up automake (1:1.11.1-1) ... update-alternatives: using /usr/bin/automake-1.11 to provide /usr/bin/automake (automake) in auto mode. Setting up html2text (1.3.2a-14build1) ... Setting up libcroco3 (0.6.2-1) ... Setting up gettext (0.17-8ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16) ... Setting up debhelper (7.4.15ubuntu1) ... Setting up fdupes (1.50-PR2-2build1) ... Setting up intltool (0.41.0-0ubuntu1) ... Setting up cdbs (0.4.62+nmu1ubuntu4) ... Setting up dpatch (2.0.31) ... Setting up libgfortran3 (4.4.3-3ubuntu1) ... Setting up gfortran-4.4 (4.4.3-3ubuntu1) ... Setting up gfortran (4:4.4.2-3ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode. Setting up libblas3gf (1.2-2build1) ... Setting up libblas-dev (1.2-2build1) ... update-alternatives: using /usr/lib/libblas.so to provide /usr/lib/libblas-3gf.so (libblas-3gf.so) in auto mode. Setting up libbz2-dev (1.0.5-4) ... Setting up libhdf5-serial-1.8.4 (1.8.4-5) ... Setting up zlib1g-dev (1:1.2.3.3.dfsg-15ubuntu1) ... Setting up libjpeg62 (6b-15) ... Setting up libjpeg62-dev (6b-15) ... Setting up libhdf5-serial-dev (1.8.4-5) ... Setting up libice6 (2:1.0.6-1) ... Setting up liblapack3gf (3.2.1-2) ... Setting up liblapack-dev (3.2.1-2) ... update-alternatives: using /usr/lib/liblapack.so to provide /usr/lib/liblapackgf-3.so (liblapackgf-3.so) in auto mode. Setting up libncurses5-dev (5.7+20090803-2ubuntu2) ... Setting up libpaper1 (1.1.23+nmu1) ... Creating config file /etc/papersize with new version Setting up libpaper-utils (1.1.23+nmu1) ... Setting up libpcrecpp0 (7.8-3) ... Setting up libpcre3-dev (7.8-3) ... Setting up libpng12-dev (1.2.42-1ubuntu1) ... Setting up libreadline6-dev (6.1-1) ... Setting up libreadline-dev (6.1-1) ... Setting up libsm6 (2:1.1.1-1) ... Setting up libtiff4 (3.9.2-2) ... Setting up libxss1 (1:1.2.0-2) ... Setting up libxt6 (1:1.0.7-1) ... Setting up zip (3.0-2) ... Setting up unzip (6.0-1) ... Setting up xdg-utils (1.0.2-6.1ubuntu2) ... Setting up tcl8.5 (8.5.8-2) ... update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode. Setting up tk8.5 (8.5.8-1) ... update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode. Setting up r-base-core (2.10.1-2) ... Setting R_PAPERSIZE_USER default to 'a4' Creating config file /etc/R/Renviron with new version Setting up r-base-dev (2.10.1-2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.11.1-0ubuntu4 make_3.81-7 dpkg-dev_1.15.5.6ubuntu1 g++-4.4_4.4.3-3ubuntu1 gcc-4.4_4.4.3-3ubuntu1 binutils_2.20-6ubuntu3 libstdc++6_4.4.3-3ubuntu1 libstdc++6-4.4-dev_4.4.3-3ubuntu1 ------------------------------------------------------------------------------ gpgv: Signature made Sat Mar 6 08:22:19 2010 UTC using RSA key ID B913E271 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./r-cran-hdf5_1.6.9-2build1.dsc dpkg-source: info: extracting r-cran-hdf5 in r-cran-hdf5-1.6.9 dpkg-source: info: unpacking r-cran-hdf5_1.6.9.orig.tar.gz dpkg-source: info: applying r-cran-hdf5_1.6.9-2build1.diff.gz dpkg-buildpackage: set CFLAGS to default value: -g -O2 dpkg-buildpackage: set CPPFLAGS to default value: dpkg-buildpackage: set LDFLAGS to default value: -Wl,-Bsymbolic-functions dpkg-buildpackage: set FFLAGS to default value: -g -O2 dpkg-buildpackage: set CXXFLAGS to default value: -g -O2 dpkg-buildpackage: source package r-cran-hdf5 dpkg-buildpackage: source version 1.6.9-2build1 dpkg-buildpackage: host architecture i386 /usr/bin/fakeroot debian/rules clean test -x debian/rules dh_testroot dh_clean dh_clean: Compatibility levels before 5 are deprecated. /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory `/build/buildd/r-cran-hdf5-1.6.9' make[1]: Nothing to be done for `reverse-config'. make[1]: Leaving directory `/build/buildd/r-cran-hdf5-1.6.9' if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi patches: if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi if [ "reverse-patches" != "reverse-patches" ] ; then \ /usr/bin/make -f debian/rules update-config ; \ fi for dir in debian/patches ; do \ rm -f $dir/*.log ; \ done if test -d src; then \ find src -regex ".*\..*o" | \ xargs --no-run-if-empty -r rm; \ fi rm -f config.log config.status debian/rules build test -x debian/rules mkdir -p "." echo 5 >debian/compat /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory `/build/buildd/r-cran-hdf5-1.6.9' make[1]: Nothing to be done for `reverse-config'. make[1]: Leaving directory `/build/buildd/r-cran-hdf5-1.6.9' if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi patches: if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi if [ "debian/stamp-patched" != "reverse-patches" ] ; then \ /usr/bin/make -f debian/rules update-config ; \ fi make[1]: Entering directory `/build/buildd/r-cran-hdf5-1.6.9' make[1]: Nothing to be done for `update-config'. make[1]: Leaving directory `/build/buildd/r-cran-hdf5-1.6.9' /usr/bin/fakeroot debian/rules binary test -x debian/rules dh_testroot dh_clean -k dh_installdirs -A mkdir -p "." dh_installdirs usr/lib/R/site-library if test -f /usr/bin/xvfb-run; then \ xvfb-run \ R CMD INSTALL -l /build/buildd/r-cran-hdf5-1.6.9/debian/r-cran-hdf5/usr/lib/R/site-library --clean \ . ; \ else \ R CMD INSTALL -l /build/buildd/r-cran-hdf5-1.6.9/debian/r-cran-hdf5/usr/lib/R/site-library \ --clean . ;\ fi * installing *source* package 'hdf5' ... checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking for library containing inflate... -lz checking for library containing H5open... -lhdf5 checking for sufficiently new HDF5... yes configure: creating ./config.status config.status: creating src/Makevars ** libs make[1]: Entering directory `/build/buildd/r-cran-hdf5-1.6.9/src' gcc -std=gnu99 -I/usr/share/R/include -fpic -g -O2 -c hdf5.c -o hdf5.o gcc -std=gnu99 -shared -o hdf5.so hdf5.o -lhdf5 -lz -lm -L/usr/lib/R/lib -lR make[1]: Leaving directory `/build/buildd/r-cran-hdf5-1.6.9/src' make[1]: Entering directory `/build/buildd/r-cran-hdf5-1.6.9/src' make[1]: Leaving directory `/build/buildd/r-cran-hdf5-1.6.9/src' ** R ** preparing package for lazy loading ** help *** installing help indices ** building package indices ... * DONE (hdf5) rm -vf /build/buildd/r-cran-hdf5-1.6.9/debian/r-cran-hdf5/usr/lib/R/site-library/R.css \ /build/buildd/r-cran-hdf5-1.6.9/debian/r-cran-hdf5/usr/lib/R/site-library/hdf5/COPYING \ /build/buildd/r-cran-hdf5-1.6.9/debian/r-cran-hdf5/usr/lib/R/site-library/hdf5/LICENSE.txt removed `/build/buildd/r-cran-hdf5-1.6.9/debian/r-cran-hdf5/usr/lib/R/site-library/R.css' if test -f debian/overrides; then \ install -d /build/buildd/r-cran-hdf5-1.6.9/debian/r-cran-hdf5/usr/share/lintian/overrides ; \ install -m 0644 debian/overrides \ /build/buildd/r-cran-hdf5-1.6.9/debian/r-cran-hdf5/usr/share/lintian/overrides/r-cran-hdf5; \ fi dh_installdirs -pr-cran-hdf5 dh_installdocs -pr-cran-hdf5 dh_installexamples -pr-cran-hdf5 dh_installman -pr-cran-hdf5 dh_installinfo -pr-cran-hdf5 dh_installmenu -pr-cran-hdf5 dh_installcron -pr-cran-hdf5 dh_installinit -pr-cran-hdf5 Duplicate specification "O=s" for option "O" dh_installdebconf -pr-cran-hdf5 dh_installemacsen -pr-cran-hdf5 dh_installcatalogs -pr-cran-hdf5 dh_installpam -pr-cran-hdf5 dh_installlogrotate -pr-cran-hdf5 dh_installlogcheck -pr-cran-hdf5 dh_installchangelogs -pr-cran-hdf5 dh_installudev -pr-cran-hdf5 dh_lintian -pr-cran-hdf5 dh_install -pr-cran-hdf5 dh_link -pr-cran-hdf5 dh_installmime -pr-cran-hdf5 dh_strip -pr-cran-hdf5 dh_strip debug symbol extraction: all non-arch-all packages for this build platform i386: r-cran-hdf5 dh_strip debug symbol extraction: packages to act on: r-cran-hdf5 dh_strip debug symbol extraction: ignored packages: WARNING: not running pkgbinarymangler for this package, as requested dpkg-deb: building package `r-cran-hdf5-dbgsym' in `../r-cran-hdf5-dbgsym_1.6.9-2build1_i386.ddeb'. dh_compress -pr-cran-hdf5 dh_fixperms -pr-cran-hdf5 dh_makeshlibs -pr-cran-hdf5 dh_installdeb -pr-cran-hdf5 dh_perl -pr-cran-hdf5 dh_shlibdeps -pr-cran-hdf5 dpkg-shlibdeps: warning: couldn't find library libR.so needed by debian/r-cran-hdf5/usr/lib/R/site-library/hdf5/libs/hdf5.so (ELF format: 'elf32-i386'; RPATH: ''). Note: libraries are not searched in other binary packages that do not have any shlibs or symbols file. To help dpkg-shlibdeps find private libraries, you might need to set LD_LIBRARY_PATH. dpkg-shlibdeps: warning: dependency on libz.so.1 could be avoided if "debian/r-cran-hdf5/usr/lib/R/site-library/hdf5/libs/hdf5.so" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libm.so.6 could be avoided if "debian/r-cran-hdf5/usr/lib/R/site-library/hdf5/libs/hdf5.so" were not uselessly linked against it (they use none of its symbols). dh_gencontrol -pr-cran-hdf5 # symlink identical documentation to depending packages [ -n "$CDBS_NO_DOC_SYMLINKING" ] || \ [ -h debian/r-cran-hdf5/usr/share/doc ] || \ [ ! -d debian/r-cran-hdf5/usr/share/doc ] || \ for dep in `perl -ne 'if (/^(Pre-)?Depends:/) {s/^\w+://; foreach (split /,/) { split; print($_[0], "\n"); } }' debian/r-cran-hdf5/DEBIAN/control`; do \ if [ -d debian/$dep/usr/share/doc ]; then \ echo "Searching for duplicated docs in dependency $dep..."; \ rootdir=`pwd`; \ (cd debian/r-cran-hdf5/usr/share/doc/r-cran-hdf5; find -type f ! -name copyright | while read f; do \ thisfile="$rootdir/debian/r-cran-hdf5/usr/share/doc/r-cran-hdf5/$f"; \ depfile="$rootdir/debian/$dep/usr/share/doc/$dep/$f"; \ if [ -f $depfile -o -L $depfile ] && zcmp $thisfile $depfile >/dev/null; then \ echo " symlinking $f in r-cran-hdf5 to file in $dep"; \ rm $thisfile; ln -s /usr/share/doc/$dep/$f $thisfile; \ fi; \ done ); \ fi; \ done # symlink identical Gnome help files within packages if [ -z "$CDBS_NO_GNOME_HELP_SYMLINKING" ] && [ -d debian/r-cran-hdf5/usr/share/gnome/help ]; then \ cd debian/r-cran-hdf5 && LC_ALL=C fdupes -r1nq usr/share/gnome/help | while read s; do \ set -- $(echo $s | tr ' ' '\n' | sort); \ f=$1; shift; \ for d; do \ echo "symlinking duplicate Gnome help file $d to $f"; \ rm $d; ln -s /$f $d; \ done; \ done; \ fi dh_link -p r-cran-hdf5 dh_md5sums -pr-cran-hdf5 dh_builddeb -pr-cran-hdf5 pkgstriptranslations: processing control file: ./debian/r-cran-hdf5/DEBIAN/control, package r-cran-hdf5, directory ./debian/r-cran-hdf5 pkgstriptranslations: r-cran-hdf5 does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgstriptranslations: static tarball already exists pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " dpkg-deb: warning: 'debian/r-cran-hdf5/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warnings about the control file(s) dpkg-deb: building package `r-cran-hdf5' in `../r-cran-hdf5_1.6.9-2build1_i386.deb'. dpkg-genchanges -b -mUbuntu/i386 Build Daemon >../r-cran-hdf5_1.6.9-2build1_i386.changes dpkg-genchanges: binary-only upload - not including any source code dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20100306-0857 Publishing debug debs. chroot-autobuild/build/buildd/r-cran-hdf5_1.6.9-2build1_i386.deb: new debian package, version 2.0. size 29050 bytes: control archive= 1225 bytes. 646 bytes, 14 lines control 1504 bytes, 20 lines md5sums Package: r-cran-hdf5 Version: 1.6.9-2build1 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Dirk Eddelbuettel Installed-Size: 180 Depends: libc6 (>= 2.4), libhdf5-serial-1.8.4 | libhdf5-1.8.4, zlib1g (>= 1:1.1.4), r-base-core (>= 2.10.0) Section: gnu-r Priority: optional Description: GNU R package interfacing the NCSA HDF5 library This package provides the functions hdf5save and hdf5load which allow saving and loading of R variables in the Hierarchical Data Format (HDF) format. Lists, strings, vectors, matrices and higher-dimensional arrays are supported. chroot-autobuild/build/buildd/r-cran-hdf5_1.6.9-2build1_i386.deb: drwxr-xr-x root/root 0 2010-03-06 08:57 ./ drwxr-xr-x root/root 0 2010-03-06 08:57 ./usr/ drwxr-xr-x root/root 0 2010-03-06 08:57 ./usr/lib/ drwxr-xr-x root/root 0 2010-03-06 08:57 ./usr/lib/R/ drwxr-xr-x root/root 0 2010-03-06 08:57 ./usr/lib/R/site-library/ drwxr-xr-x root/root 0 2010-03-06 08:57 ./usr/lib/R/site-library/hdf5/ -rw-r--r-- root/root 38 2010-03-06 08:57 ./usr/lib/R/site-library/hdf5/NAMESPACE -rw-r--r-- root/root 321 2010-03-06 08:57 ./usr/lib/R/site-library/hdf5/DESCRIPTION drwxr-xr-x root/root 0 2010-03-06 08:57 ./usr/lib/R/site-library/hdf5/Meta/ -rw-r--r-- root/root 502 2010-03-06 08:57 ./usr/lib/R/site-library/hdf5/Meta/package.rds -rw-r--r-- root/root 264 2010-03-06 08:57 ./usr/lib/R/site-library/hdf5/Meta/Rd.rds -rw-r--r-- root/root 307 2010-03-06 08:57 ./usr/lib/R/site-library/hdf5/Meta/hsearch.rds -rw-r--r-- root/root 129 2010-03-06 08:57 ./usr/lib/R/site-library/hdf5/Meta/links.rds -rw-r--r-- root/root 204 2010-03-06 08:57 ./usr/lib/R/site-library/hdf5/Meta/nsInfo.rds drwxr-xr-x root/root 0 2010-03-06 08:57 ./usr/lib/R/site-library/hdf5/libs/ -rw-r--r-- root/root 38524 2010-03-06 08:57 ./usr/lib/R/site-library/hdf5/libs/hdf5.so drwxr-xr-x root/root 0 2010-03-06 08:57 ./usr/lib/R/site-library/hdf5/R/ -rw-r--r-- root/root 384 2010-03-06 08:57 ./usr/lib/R/site-library/hdf5/R/hdf5 -rw-r--r-- root/root 1436 2010-03-06 08:57 ./usr/lib/R/site-library/hdf5/R/hdf5.rdb -rw-r--r-- root/root 304 2010-03-06 08:57 ./usr/lib/R/site-library/hdf5/R/hdf5.rdx drwxr-xr-x root/root 0 2010-03-06 08:57 ./usr/lib/R/site-library/hdf5/help/ -rw-r--r-- root/root 57 2010-03-06 08:57 ./usr/lib/R/site-library/hdf5/help/paths.rds -rw-r--r-- root/root 4327 2010-03-06 08:57 ./usr/lib/R/site-library/hdf5/help/hdf5.rdb -rw-r--r-- root/root 145 2010-03-06 08:57 ./usr/lib/R/site-library/hdf5/help/hdf5.rdx -rw-r--r-- root/root 45 2010-03-06 08:57 ./usr/lib/R/site-library/hdf5/help/AnIndex -rw-r--r-- root/root 92 2010-03-06 08:57 ./usr/lib/R/site-library/hdf5/help/aliases.rds drwxr-xr-x root/root 0 2010-03-06 08:57 ./usr/lib/R/site-library/hdf5/html/ -rw-r--r-- root/root 1070 2010-03-06 08:57 ./usr/lib/R/site-library/hdf5/html/00Index.html -rw-r--r-- root/root 54 2010-03-06 08:57 ./usr/lib/R/site-library/hdf5/INDEX drwxr-xr-x root/root 0 2010-03-06 08:57 ./usr/share/ drwxr-xr-x root/root 0 2010-03-06 08:57 ./usr/share/doc/ drwxr-xr-x root/root 0 2010-03-06 08:57 ./usr/share/doc/r-cran-hdf5/ -rw-r--r-- root/root 915 2010-03-06 08:57 ./usr/share/doc/r-cran-hdf5/copyright -rw-r--r-- root/root 859 2010-03-06 08:57 ./usr/share/doc/r-cran-hdf5/changelog.Debian.gz r-cran-hdf5_1.6.9-2build1_i386.changes: Format: 1.8 Date: Sat, 06 Mar 2010 11:22:18 +0300 Source: r-cran-hdf5 Binary: r-cran-hdf5 Architecture: i386 Version: 1.6.9-2build1 Distribution: lucid Urgency: low Maintainer: Ubuntu/i386 Build Daemon Changed-By: Ilya Barygin Description: r-cran-hdf5 - GNU R package interfacing the NCSA HDF5 library Changes: r-cran-hdf5 (1.6.9-2build1) lucid; urgency=low . * No-change rebuild for hdf5 1.6.6-0 -> 1.8.4 transition. Checksums-Sha1: 92b52bc9fefe1035526f6daed80f23d0f951e85d 29050 r-cran-hdf5_1.6.9-2build1_i386.deb Checksums-Sha256: 4c92b80652ec55cd2843b0792d4a22861a3c55ae0aa16e264cfea6a8e6d23b4e 29050 r-cran-hdf5_1.6.9-2build1_i386.deb Files: 29d5d3df0f640b585e561324f9e5e557 29050 gnu-r optional r-cran-hdf5_1.6.9-2build1_i386.deb ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/r-cran-hdf5-1.6.9 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --purge groff-base libx11-data unzip m4 fontconfig-config defoma ttf-dejavu-core gettext file zlib1g-dev libhtml-parser-perl fontconfig liburi-perl libcairo2 x11-common autotools-dev libcroco3 gfortran liblapack-dev libpopt0 xdg-utils libpcre3-dev libfreetype6 automake libjpeg62 liblapack3gf libxcb1 html2text libreadline6-dev libjpeg62-dev debhelper libfontconfig1 libhdf5-serial-1.8.4 libhdf5-serial-dev libthai0 libncurses5-dev tcl8.5 libmagic1 libblas3gf libtiff4 libgfortran3 libexpat1 bsdmainutils libxau6 libpcrecpp0 fdupes r-base-dev libx11-6 tk8.5 libnewt0.52 whiptail intltool libpango1.0-common dpatch libts-0.0-0 libxt6 libwww-perl libxdmcp6 libxss1 libhtml-tree-perl po-debconf libxcb-render-util0 libdirectfb-1.2-0 tsconf libxml-parser-perl libpaper1 libhtml-tagset-perl r-base-core libxml2 zip libpaper-utils libbz2-dev libthai-data man-db libice6 intltool-debian libpixman-1-0 libxrender1 libreadline-dev libpango1.0-0 ucf libdatrie1 cdbs gettext-base libpng12-dev libsm6 libxft2 gfortran-4.4 libxext6 libsysfs2 libxcb-render0 libblas-dev autoconf (Reading database ... 18998 files and directories currently installed.) Removing libhdf5-serial-dev ... Removing r-base-dev ... Removing dpatch ... Purging configuration files for dpatch ... Removing r-base-core ... Purging configuration files for r-base-core ... Removing zip ... Removing libpaper-utils ... Removing libbz2-dev ... Removing libreadline-dev ... Removing libpango1.0-0 ... Purging configuration files for libpango1.0-0 ... Removing cdbs ... Removing libpng12-dev ... Removing unzip ... Removing zlib1g-dev ... Removing libcairo2 ... Purging configuration files for libcairo2 ... Removing gfortran ... Removing liblapack-dev ... Removing xdg-utils ... Removing libpcre3-dev ... Removing liblapack3gf ... Purging configuration files for liblapack3gf ... Removing libreadline6-dev ... Removing libjpeg62-dev ... Removing debhelper ... Removing libhdf5-serial-1.8.4 ... Purging configuration files for libhdf5-serial-1.8.4 ... Removing libthai0 ... Purging configuration files for libthai0 ... Removing libncurses5-dev ... Removing libtiff4 ... Purging configuration files for libtiff4 ... Removing libpcrecpp0 ... Purging configuration files for libpcrecpp0 ... Removing fdupes ... Removing tk8.5 ... Purging configuration files for tk8.5 ... Removing intltool ... Removing libpango1.0-common ... Purging font configuration of pango... Purging category xfont.. Purging configuration files for libpango1.0-common ... Removing libxt6 ... Purging configuration files for libxt6 ... Removing libxss1 ... Purging configuration files for libxss1 ... Removing po-debconf ... Removing libxcb-render-util0 ... Purging configuration files for libxcb-render-util0 ... Removing libdirectfb-1.2-0 ... Purging configuration files for libdirectfb-1.2-0 ... Removing libxml-parser-perl ... Removing libpaper1 ... Purging configuration files for libpaper1 ... Removing libthai-data ... Removing man-db ... Purging configuration files for man-db ... Removing catpages as well as /var/cache/man hierarchy. Removing intltool-debian ... Removing libpixman-1-0 ... Purging configuration files for libpixman-1-0 ... Removing libdatrie1 ... Purging configuration files for libdatrie1 ... Removing libsm6 ... Purging configuration files for libsm6 ... Removing libxft2 ... Purging configuration files for libxft2 ... Removing gfortran-4.4 ... Removing libxext6 ... Purging configuration files for libxext6 ... Removing libsysfs2 ... Purging configuration files for libsysfs2 ... Removing libxcb-render0 ... Purging configuration files for libxcb-render0 ... Removing libblas-dev ... Removing groff-base ... Purging configuration files for groff-base ... Removing defoma ... Purging configuration files for defoma ... dpkg: warning: while removing defoma, directory '/etc/defoma' not empty so not removed. Removing gettext ... Removing file ... Purging configuration files for file ... Removing fontconfig ... Purging configuration files for fontconfig ... Removing libcroco3 ... Purging configuration files for libcroco3 ... Removing automake ... Removing libjpeg62 ... Removing html2text ... Purging configuration files for html2text ... Removing libfontconfig1 ... Purging configuration files for libfontconfig1 ... Removing tcl8.5 ... Purging configuration files for tcl8.5 ... Removing libmagic1 ... Purging configuration files for libmagic1 ... Removing libblas3gf ... Purging configuration files for libblas3gf ... Removing libgfortran3 ... Purging configuration files for libgfortran3 ... Removing libexpat1 ... Purging configuration files for libexpat1 ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing whiptail ... Removing libts-0.0-0 ... Purging configuration files for libts-0.0-0 ... Removing libwww-perl ... Removing libhtml-tree-perl ... Removing tsconf ... Purging configuration files for tsconf ... Removing libxml2 ... Purging configuration files for libxml2 ... Removing libice6 ... Purging configuration files for libice6 ... Removing libxrender1 ... Purging configuration files for libxrender1 ... Removing gettext-base ... Removing autoconf ... Purging configuration files for autoconf ... Removing m4 ... Removing fontconfig-config ... Purging configuration files for fontconfig-config ... Removing ttf-dejavu-core ... Removing libhtml-parser-perl ... Removing liburi-perl ... Removing x11-common ... Purging configuration files for x11-common ... Removing autotools-dev ... Removing libpopt0 ... Purging configuration files for libpopt0 ... Removing libfreetype6 ... Purging configuration files for libfreetype6 ... Removing libx11-6 ... Purging configuration files for libx11-6 ... Removing libnewt0.52 ... Purging configuration files for libnewt0.52 ... Removing libhtml-tagset-perl ... Removing ucf ... Purging configuration files for ucf ... Removing libx11-data ... Removing libxcb1 ... Purging configuration files for libxcb1 ... Removing libxau6 ... Purging configuration files for libxau6 ... Removing libxdmcp6 ... Purging configuration files for libxdmcp6 ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20100306-0858 Build needed 00:00:19, 512k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '1546291-3157229'] Scanning for processes to kill in build /home/buildd/build-1546291-3157229/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '1546291-3157229'] Unmounting chroot for build 1546291-3157229... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '1546291-3157229'] Removing build 1546291-3157229