RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos01-arm64-029 4.4.0-101-generic #124-Ubuntu SMP Fri Nov 10 18:30:44 UTC 2017 aarch64 Buildd toolchain package versions: launchpad-buildd_157 python-lpbuildd_157 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.3 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 30 Nov 05:08:38 ntpdate[1860]: adjust time server 10.211.37.1 offset 0.068000 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-13794844 /home/buildd/filecache-default/b70461af4419c13dbae7acd6fe74d075a1a9550f Creating target for build PACKAGEBUILD-13794844 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-13794844 Starting target for build PACKAGEBUILD-13794844 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-13794844 'deb http://ftpmaster.internal/ubuntu bionic main universe' 'deb http://ftpmaster.internal/ubuntu bionic-security main universe' 'deb http://ftpmaster.internal/ubuntu bionic-updates main universe' 'deb http://ftpmaster.internal/ubuntu bionic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-13794844 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-13794844 Updating target for build PACKAGEBUILD-13794844 Get:1 http://ftpmaster.internal/ubuntu bionic InRelease [235 kB] Get:2 http://ftpmaster.internal/ubuntu bionic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu bionic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu bionic-proposed InRelease [85.4 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main armhf Packages [1010 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main Translation-en [534 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/universe armhf Packages [8035 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/universe Translation-en [4876 kB] Get:9 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf Packages [38.9 kB] Get:10 http://ftpmaster.internal/ubuntu bionic-proposed/main Translation-en [23.1 kB] Get:11 http://ftpmaster.internal/ubuntu bionic-proposed/universe armhf Packages [140 kB] Get:12 http://ftpmaster.internal/ubuntu bionic-proposed/universe Translation-en [81.9 kB] Fetched 15.2 MB in 8s (1796 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libasn1-8-heimdal libcurl3-gnutls libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libunistring0 libustr-1.0-1 libwind0-heimdal Use 'sudo apt autoremove' to remove them. The following packages will be upgraded: apt apt-transport-https base-files base-passwd binutils binutils-arm-linux-gnueabihf binutils-common bsdutils build-essential coreutils cpp-7 debconf debianutils dpkg dpkg-dev e2fslibs e2fsprogs fdisk findutils g++-7 gcc-7 gcc-7-base gnupg gnupg-agent gpgv libapparmor1 libapt-pkg5.0 libasan4 libassuan0 libatomic1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcilkrts5 libcomerr2 libcurl3-gnutls libdpkg-perl libfdisk1 libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgomp1 libgpg-error0 libgssapi-krb5-2 libhogweed4 libidn2-0 libip4tc0 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libmount1 libnettle6 libnpth0 libp11-kit0 libpcre3 libperl5.26 libpng16-16 libpsl5 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-7-dev libstdc++6 libsystemd0 libtasn1-6 libubsan0 libudev1 libuuid1 linux-libc-dev mount multiarch-support openssl optipng perl perl-base perl-modules-5.26 pinentry-curses sensible-utils systemd systemd-sysv sysvinit-utils tzdata util-linux 96 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 51.8 MB of archives. After this operation, 2884 kB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu bionic/main armhf base-files armhf 10ubuntu1 [55.9 kB] Get:2 http://ftpmaster.internal/ubuntu bionic/main armhf bsdutils armhf 1:2.30.2-0.1ubuntu1 [55.4 kB] Get:3 http://ftpmaster.internal/ubuntu bionic/main armhf coreutils armhf 8.26-3ubuntu4 [1111 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main armhf debianutils armhf 4.8.3 [84.7 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main armhf dpkg armhf 1.19.0.4ubuntu1 [1100 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main armhf libc6-dev armhf 2.26-0ubuntu2 [1900 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main armhf libc-dev-bin armhf 2.26-0ubuntu2 [60.1 kB] Get:8 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf linux-libc-dev armhf 4.13.0-17.20 [943 kB] Get:9 http://ftpmaster.internal/ubuntu bionic/main armhf libgomp1 armhf 7.2.0-16ubuntu1 [65.6 kB] Get:10 http://ftpmaster.internal/ubuntu bionic/main armhf gcc-7-base armhf 7.2.0-16ubuntu1 [18.6 kB] Get:11 http://ftpmaster.internal/ubuntu bionic/main armhf libgcc1 armhf 1:7.2.0-16ubuntu1 [37.3 kB] Get:12 http://ftpmaster.internal/ubuntu bionic/main armhf libatomic1 armhf 7.2.0-16ubuntu1 [6308 B] Get:13 http://ftpmaster.internal/ubuntu bionic/main armhf libasan4 armhf 7.2.0-16ubuntu1 [327 kB] Get:14 http://ftpmaster.internal/ubuntu bionic/main armhf libubsan0 armhf 7.2.0-16ubuntu1 [108 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main armhf libcilkrts5 armhf 7.2.0-16ubuntu1 [36.0 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/main armhf cpp-7 armhf 7.2.0-16ubuntu1 [5287 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main armhf libcc1-0 armhf 7.2.0-16ubuntu1 [32.3 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main armhf g++-7 armhf 7.2.0-16ubuntu1 [6033 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main armhf gcc-7 armhf 7.2.0-16ubuntu1 [5921 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main armhf libgcc-7-dev armhf 7.2.0-16ubuntu1 [707 kB] Get:21 http://ftpmaster.internal/ubuntu bionic/main armhf libstdc++-7-dev armhf 7.2.0-16ubuntu1 [1528 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main armhf libstdc++6 armhf 7.2.0-16ubuntu1 [350 kB] Get:23 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libgmp10 armhf 2:6.1.2+dfsg-1.1 [182 kB] Get:24 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libbinutils armhf 2.29.1-9ubuntu1 [307 kB] Get:25 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf binutils armhf 2.29.1-9ubuntu1 [3372 B] Get:26 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf binutils-common armhf 2.29.1-9ubuntu1 [190 kB] Get:27 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf binutils-arm-linux-gnueabihf armhf 2.29.1-9ubuntu1 [2188 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main armhf libc6 armhf 2.26-0ubuntu2 [2212 kB] Get:29 http://ftpmaster.internal/ubuntu bionic/main armhf e2fslibs armhf 1.43.7-1 [145 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main armhf e2fsprogs armhf 1.43.7-1 [477 kB] Get:31 http://ftpmaster.internal/ubuntu bionic/main armhf findutils armhf 4.6.0+git+20170828-2 [277 kB] Get:32 http://ftpmaster.internal/ubuntu bionic/main armhf perl-modules-5.26 all 5.26.1-2ubuntu1 [2760 kB] Get:33 http://ftpmaster.internal/ubuntu bionic/main armhf libperl5.26 armhf 5.26.1-2ubuntu1 [2878 kB] Get:34 http://ftpmaster.internal/ubuntu bionic/main armhf perl armhf 5.26.1-2ubuntu1 [201 kB] Get:35 http://ftpmaster.internal/ubuntu bionic/main armhf perl-base armhf 5.26.1-2ubuntu1 [1289 kB] Get:36 http://ftpmaster.internal/ubuntu bionic/main armhf libuuid1 armhf 2.30.2-0.1ubuntu1 [14.5 kB] Get:37 http://ftpmaster.internal/ubuntu bionic/main armhf libblkid1 armhf 2.30.2-0.1ubuntu1 [106 kB] Get:38 http://ftpmaster.internal/ubuntu bionic/main armhf libsmartcols1 armhf 2.30.2-0.1ubuntu1 [68.7 kB] Get:39 http://ftpmaster.internal/ubuntu bionic/main armhf libfdisk1 armhf 2.30.2-0.1ubuntu1 [144 kB] Get:40 http://ftpmaster.internal/ubuntu bionic/main armhf libpcre3 armhf 2:8.39-5ubuntu3 [209 kB] Get:41 http://ftpmaster.internal/ubuntu bionic/main armhf libselinux1 armhf 2.7-2 [59.1 kB] Get:42 http://ftpmaster.internal/ubuntu bionic/main armhf libmount1 armhf 2.30.2-0.1ubuntu1 [116 kB] Get:43 http://ftpmaster.internal/ubuntu bionic/main armhf fdisk armhf 2.30.2-0.1ubuntu1 [96.6 kB] Get:44 http://ftpmaster.internal/ubuntu bionic/main armhf util-linux armhf 2.30.2-0.1ubuntu1 [823 kB] Get:45 http://ftpmaster.internal/ubuntu bionic/main armhf base-passwd armhf 3.5.44 [45.9 kB] Get:46 http://ftpmaster.internal/ubuntu bionic/main armhf libc-bin armhf 2.26-0ubuntu2 [477 kB] Get:47 http://ftpmaster.internal/ubuntu bionic/main armhf sysvinit-utils armhf 2.88dsf-59.10ubuntu1 [17.2 kB] Get:48 http://ftpmaster.internal/ubuntu bionic/main armhf libudev1 armhf 235-3ubuntu2 [49.4 kB] Get:49 http://ftpmaster.internal/ubuntu bionic/main armhf libapt-pkg5.0 armhf 1.6~alpha5 [709 kB] Get:50 http://ftpmaster.internal/ubuntu bionic/main armhf libgpg-error0 armhf 1.27-5 [32.4 kB] Get:51 http://ftpmaster.internal/ubuntu bionic/main armhf libgcrypt20 armhf 1.8.1-4 [363 kB] Get:52 http://ftpmaster.internal/ubuntu bionic/main armhf gpgv armhf 2.1.15-1ubuntu8 [157 kB] Get:53 http://ftpmaster.internal/ubuntu bionic/main armhf libseccomp2 armhf 2.3.1-2.1ubuntu3 [29.9 kB] Get:54 http://ftpmaster.internal/ubuntu bionic/main armhf apt armhf 1.6~alpha5 [1104 kB] Get:55 http://ftpmaster.internal/ubuntu bionic/main armhf debconf all 1.5.65 [124 kB] Get:56 http://ftpmaster.internal/ubuntu bionic/main armhf libapparmor1 armhf 2.11.0-2ubuntu18 [24.6 kB] Get:57 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libcap2 armhf 1:2.25-1.2 [11.7 kB] Get:58 http://ftpmaster.internal/ubuntu bionic/main armhf libip4tc0 armhf 1.6.1-2ubuntu2 [17.8 kB] Get:59 http://ftpmaster.internal/ubuntu bionic/main armhf mount armhf 2.30.2-0.1ubuntu1 [104 kB] Get:60 http://ftpmaster.internal/ubuntu bionic/main armhf systemd armhf 235-3ubuntu2 [2680 kB] Get:61 http://ftpmaster.internal/ubuntu bionic/main armhf libsystemd0 armhf 235-3ubuntu2 [179 kB] Get:62 http://ftpmaster.internal/ubuntu bionic/main armhf systemd-sysv armhf 235-3ubuntu2 [13.1 kB] Get:63 http://ftpmaster.internal/ubuntu bionic/main armhf libcap-ng0 armhf 0.7.7-3.1 [9816 B] Get:64 http://ftpmaster.internal/ubuntu bionic/main armhf libcomerr2 armhf 1.43.7-1 [10.6 kB] Get:65 http://ftpmaster.internal/ubuntu bionic/main armhf libsemanage-common all 2.7-2 [6916 B] Get:66 http://ftpmaster.internal/ubuntu bionic/main armhf libsemanage1 armhf 2.7-2 [72.3 kB] Get:67 http://ftpmaster.internal/ubuntu bionic/main armhf libss2 armhf 1.43.7-1 [9376 B] Get:68 http://ftpmaster.internal/ubuntu bionic/main armhf libnettle6 armhf 3.3-2 [106 kB] Get:69 http://ftpmaster.internal/ubuntu bionic/main armhf libhogweed4 armhf 3.3-2 [126 kB] Get:70 http://ftpmaster.internal/ubuntu bionic/main armhf libp11-kit0 armhf 0.23.9-2 [162 kB] Get:71 http://ftpmaster.internal/ubuntu bionic/main armhf libtasn1-6 armhf 4.12-3 [31.2 kB] Get:72 http://ftpmaster.internal/ubuntu bionic/main armhf sensible-utils all 0.0.11 [14.8 kB] Get:73 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libassuan0 armhf 2.4.4-1 [28.0 kB] Get:74 http://ftpmaster.internal/ubuntu bionic/main armhf pinentry-curses armhf 1.0.0-3 [30.4 kB] Get:75 http://ftpmaster.internal/ubuntu bionic/main armhf libnpth0 armhf 1.5-3 [6632 B] Get:76 http://ftpmaster.internal/ubuntu bionic/main armhf gnupg armhf 2.1.15-1ubuntu8 [711 kB] Get:77 http://ftpmaster.internal/ubuntu bionic/main armhf gnupg-agent armhf 2.1.15-1ubuntu8 [211 kB] Get:78 http://ftpmaster.internal/ubuntu bionic/main armhf libsqlite3-0 armhf 3.21.0-1 [417 kB] Get:79 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libssl1.0.0 armhf 1.0.2g-1ubuntu14 [706 kB] Get:80 http://ftpmaster.internal/ubuntu bionic/main armhf multiarch-support armhf 2.26-0ubuntu2 [6832 B] Get:81 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf openssl armhf 1.0.2g-1ubuntu14 [477 kB] Get:82 http://ftpmaster.internal/ubuntu bionic/main armhf tzdata all 2017c-1 [188 kB] Get:83 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libgssapi-krb5-2 armhf 1.15.2-2 [99.2 kB] Get:84 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libkrb5-3 armhf 1.15.2-2 [231 kB] Get:85 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libkrb5support0 armhf 1.15.2-2 [27.4 kB] Get:86 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libk5crypto3 armhf 1.15.2-2 [83.5 kB] Get:87 http://ftpmaster.internal/ubuntu bionic/main armhf libkeyutils1 armhf 1.5.9-9.2ubuntu1 [8380 B] Get:88 http://ftpmaster.internal/ubuntu bionic/main armhf libidn2-0 armhf 2.0.4-1 [88.2 kB] Get:89 http://ftpmaster.internal/ubuntu bionic/main armhf libpng16-16 armhf 1.6.34-1 [159 kB] Get:90 http://ftpmaster.internal/ubuntu bionic/main armhf apt-transport-https all 1.6~alpha5 [1692 B] Get:91 http://ftpmaster.internal/ubuntu bionic/main armhf dpkg-dev all 1.19.0.4ubuntu1 [607 kB] Get:92 http://ftpmaster.internal/ubuntu bionic/main armhf libdpkg-perl all 1.19.0.4ubuntu1 [211 kB] Get:93 http://ftpmaster.internal/ubuntu bionic/main armhf build-essential armhf 12.4ubuntu1 [4752 B] Get:94 http://ftpmaster.internal/ubuntu bionic/main armhf libpsl5 armhf 0.19.1-3 [39.9 kB] Get:95 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libcurl3-gnutls armhf 7.55.1-1ubuntu3 [167 kB] Get:96 http://ftpmaster.internal/ubuntu bionic/main armhf optipng armhf 0.7.6-1ubuntu1 [80.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 51.8 MB in 5s (9434 kB/s) (Reading database ... 12457 files and directories currently installed.) Preparing to unpack .../base-files_10ubuntu1_armhf.deb ... Unpacking base-files (10ubuntu1) over (9.6ubuntu101) ... Setting up base-files (10ubuntu1) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12457 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.30.2-0.1ubuntu1_armhf.deb ... Unpacking bsdutils (1:2.30.2-0.1ubuntu1) over (1:2.30.1-0ubuntu4) ... Setting up bsdutils (1:2.30.2-0.1ubuntu1) ... (Reading database ... 12457 files and directories currently installed.) Preparing to unpack .../coreutils_8.26-3ubuntu4_armhf.deb ... Unpacking coreutils (8.26-3ubuntu4) over (8.26-3ubuntu3) ... Setting up coreutils (8.26-3ubuntu4) ... (Reading database ... 12457 files and directories currently installed.) 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Setting up gcc-7 (7.2.0-16ubuntu1) ... Setting up g++-7 (7.2.0-16ubuntu1) ... Setting up gnupg (2.1.15-1ubuntu8) ... Setting up libdpkg-perl (1.19.0.4ubuntu1) ... Setting up libgssapi-krb5-2:armhf (1.15.2-2) ... Setting up dpkg-dev (1.19.0.4ubuntu1) ... Setting up build-essential (12.4ubuntu1) ... Setting up libcurl3-gnutls:armhf (7.55.1-1ubuntu3) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-13794844 armhf bionic-proposed -c chroot:build-PACKAGEBUILD-13794844 --arch=armhf --dist=bionic-proposed --nolog r-cran-rncl_0.8.2-2.dsc Initiating build PACKAGEBUILD-13794844 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-101-generic #124-Ubuntu SMP Fri Nov 10 18:30:44 UTC 2017 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos01-arm64-029.buildd +==============================================================================+ | r-cran-rncl 0.8.2-2 (armhf) 30 Nov 2017 05:10 | +==============================================================================+ Package: r-cran-rncl Version: 0.8.2-2 Source Version: 0.8.2-2 Distribution: bionic-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/r-cran-rncl-SsjZT2/r-cran-rncl-0.8.2' with '<>' I: NOTICE: Log filtering will replace 'build/r-cran-rncl-SsjZT2' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-13794844/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-cran-rncl_0.8.2-2.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-fKFQcW/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-fKFQcW/apt_archive ./ InRelease Get:2 copy:/<>/resolver-fKFQcW/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-fKFQcW/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-fKFQcW/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-fKFQcW/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (39.6 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libasn1-8-heimdal libcurl3-gnutls libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libunistring0 libustr-1.0-1 libwind0-heimdal Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-fKFQcW/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (17.8 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12458 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 10), dh-r, r-base-dev, r-cran-rcpp, r-cran-progress Filtered Build-Depends: debhelper (>= 10), dh-r, r-base-dev, r-cran-rcpp, r-cran-progress dpkg-deb: building package 'sbuild-build-depends-r-cran-rncl-dummy' in '/<>/resolver-PnCYeT/apt_archive/sbuild-build-depends-r-cran-rncl-dummy.deb'. Ign:1 copy:/<>/resolver-PnCYeT/apt_archive ./ InRelease Get:2 copy:/<>/resolver-PnCYeT/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-PnCYeT/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-PnCYeT/apt_archive ./ Sources [237 B] Get:5 copy:/<>/resolver-PnCYeT/apt_archive ./ Packages [553 B] Fetched 2909 B in 0s (41.4 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install r-cran-rncl build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libcurl3-gnutls libustr-1.0-1 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cdbs dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dh-translations file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-7 groff-base icu-devtools intltool intltool-debian libarchive-zip-perl libblas-dev libblas3 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl3 libdatrie1 libencode-locale-perl libexpat1 libfile-listing-perl libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgfortran-7-dev libgfortran4 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libicu-dev libicu60 libio-html-perl libio-socket-ssl-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic-mgc libmagic1 libncurses5-dev libnet-http-perl libnet-ssleay-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline-dev libsigsegv2 libsm6 libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev libtk8.6 libtool libtry-tiny-perl liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db mime-support netbase perl-openssl-defaults pkg-config po-debconf python python-minimal python-pkg-resources python-scour python-six python2.7 python2.7-minimal r-base-core r-base-dev r-cran-assertthat r-cran-littler r-cran-magrittr r-cran-pkgkitten r-cran-prettyunits r-cran-progress r-cran-r6 r-cran-rcpp ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation devscripts debtags dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-7-multilib gfortran-7-doc libgfortran4-dbg libcoarrays-dev groff liblapack-doc libdata-dump-perl icu-doc libcrypt-ssleay-perl liblzma-doc ncurses-doc readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk libauthen-ntlm-perl m4-doc less www-browser apparmor libmail-box-perl python-doc python-tk python-setuptools python-rsvg python-cairo python2.7-doc binfmt-support ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo r-cran-testthat r-cran-getopt r-cran-knitr r-cran-ggplot2 r-cran-scales r-cran-inline libglib2.0-bin Recommended packages: curl | wget | lynx-cur bzip2-doc libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libhtml-format-perl libpng-tools libltdl-dev libdata-dump-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl libmail-sendmail-perl r-recommended r-doc-html libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following packages will be REMOVED: pkg-create-dbgsym* The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cdbs dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dh-translations file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-7 groff-base icu-devtools intltool intltool-debian libarchive-zip-perl libblas-dev libblas3 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl3 libdatrie1 libencode-locale-perl libexpat1 libfile-listing-perl libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgfortran-7-dev libgfortran4 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libice6 libicu-dev libicu60 libio-html-perl libio-socket-ssl-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic-mgc libmagic1 libncurses5-dev libnet-http-perl libnet-ssleay-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libreadline-dev libsigsegv2 libsm6 libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev libtk8.6 libtool libtry-tiny-perl liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db mime-support netbase perl-openssl-defaults pkg-config po-debconf python python-minimal python-pkg-resources python-scour python-six python2.7 python2.7-minimal r-base-core r-base-dev r-cran-assertthat r-cran-littler r-cran-magrittr r-cran-pkgkitten r-cran-prettyunits r-cran-progress r-cran-r6 r-cran-rcpp sbuild-build-depends-r-cran-rncl-dummy ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 150 newly installed, 1 to remove and 0 not upgraded. Need to get 74.3 MB of archives. After this operation, 218 MB of additional disk space will be used. Get:1 copy:/<>/resolver-PnCYeT/apt_archive ./ sbuild-build-depends-r-cran-rncl-dummy 0.invalid.0 [884 B] Get:2 http://ftpmaster.internal/ubuntu bionic/main armhf libxau6 armhf 1:1.0.8-1 [7324 B] Get:3 http://ftpmaster.internal/ubuntu bionic/main armhf libbsd0 armhf 0.8.6-3 [40.6 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main armhf libxdmcp6 armhf 1:1.1.2-3 [9316 B] Get:5 http://ftpmaster.internal/ubuntu bionic/main armhf libxcb1 armhf 1.12-1ubuntu1 [40.9 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main armhf libx11-data all 2:1.6.4-3 [114 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main armhf libx11-6 armhf 2:1.6.4-3 [515 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/main armhf libxext6 armhf 2:1.3.3-1 [25.1 kB] Get:9 http://ftpmaster.internal/ubuntu bionic/main armhf groff-base armhf 1.22.3-9 [1013 kB] Get:10 http://ftpmaster.internal/ubuntu bionic/main armhf bsdmainutils armhf 9.0.14ubuntu1 [173 kB] Get:11 http://ftpmaster.internal/ubuntu bionic/main armhf libpipeline1 armhf 1.5.0-1 [21.1 kB] Get:12 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf man-db armhf 2.7.6.1-4 [872 kB] Get:13 http://ftpmaster.internal/ubuntu bionic/main armhf libexpat1 armhf 2.2.3-2 [59.7 kB] Get:14 http://ftpmaster.internal/ubuntu bionic/main armhf libfreetype6 armhf 2.8-0.2ubuntu2 [275 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main armhf ucf all 3.0036 [52.9 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/main armhf fonts-dejavu-core all 2.37-1 [1041 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main armhf fontconfig-config all 2.12.6-0ubuntu1 [55.5 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main armhf libfontconfig1 armhf 2.12.6-0ubuntu1 [120 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main armhf fontconfig armhf 2.12.6-0ubuntu1 [167 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main armhf libjpeg-turbo8 armhf 1.5.2-0ubuntu5 [87.2 kB] Get:21 http://ftpmaster.internal/ubuntu bionic/main armhf x11-common all 1:7.7+19ubuntu3 [22.0 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main armhf libice6 armhf 2:1.0.9-2 [33.5 kB] Get:23 http://ftpmaster.internal/ubuntu bionic/main armhf libsm6 armhf 2:1.2.2-1 [13.9 kB] Get:24 http://ftpmaster.internal/ubuntu bionic/main armhf libxrender1 armhf 1:0.9.10-1 [15.6 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main armhf libxft2 armhf 2.3.2-1 [30.5 kB] Get:26 http://ftpmaster.internal/ubuntu bionic/main armhf libxss1 armhf 1:1.2.2-1 [7652 B] Get:27 http://ftpmaster.internal/ubuntu bionic/main armhf libpython2.7-minimal armhf 2.7.14-2ubuntu2 [338 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main armhf python2.7-minimal armhf 2.7.14-2ubuntu2 [1080 kB] Get:29 http://ftpmaster.internal/ubuntu bionic/main armhf python-minimal armhf 2.7.14-2ubuntu1 [28.1 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main armhf mime-support all 3.60ubuntu1 [30.1 kB] Get:31 http://ftpmaster.internal/ubuntu bionic/main armhf libpython2.7-stdlib armhf 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[573 kB] Get:42 http://ftpmaster.internal/ubuntu bionic/main armhf netbase all 5.4 [12.7 kB] Get:43 http://ftpmaster.internal/ubuntu bionic/main armhf gettext-base armhf 0.19.8.1-4ubuntu1 [45.4 kB] Get:44 http://ftpmaster.internal/ubuntu bionic/main armhf libxmuu1 armhf 2:1.1.2-2 [9130 B] Get:45 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf xauth armhf 1:1.0.10-1 [21.7 kB] Get:46 http://ftpmaster.internal/ubuntu bionic/main armhf libsigsegv2 armhf 2.11-1 [12.6 kB] Get:47 http://ftpmaster.internal/ubuntu bionic/main armhf m4 armhf 1.4.18-1 [181 kB] Get:48 http://ftpmaster.internal/ubuntu bionic/main armhf autoconf all 2.69-11 [322 kB] Get:49 http://ftpmaster.internal/ubuntu bionic/main armhf autotools-dev all 20161112.1+nmu1 [40.2 kB] Get:50 http://ftpmaster.internal/ubuntu bionic/main armhf automake all 1:1.15.1-3ubuntu1 [509 kB] Get:51 http://ftpmaster.internal/ubuntu bionic/main armhf autopoint all 0.19.8.1-4ubuntu1 [412 kB] Get:52 http://ftpmaster.internal/ubuntu bionic/main armhf libtool all 2.4.6-2 [194 kB] Get:53 http://ftpmaster.internal/ubuntu bionic/main armhf dh-autoreconf all 15 [15.8 kB] Get:54 http://ftpmaster.internal/ubuntu bionic/main armhf libarchive-zip-perl all 1.59-1 [84.0 kB] Get:55 http://ftpmaster.internal/ubuntu bionic/main armhf libfile-stripnondeterminism-perl all 0.040-1 [13.9 kB] Get:56 http://ftpmaster.internal/ubuntu bionic/main armhf libtimedate-perl all 2.3000-2 [37.5 kB] Get:57 http://ftpmaster.internal/ubuntu bionic/main armhf dh-strip-nondeterminism all 0.040-1 [5196 B] Get:58 http://ftpmaster.internal/ubuntu bionic/main armhf libcroco3 armhf 0.6.12-1 [69.7 kB] Get:59 http://ftpmaster.internal/ubuntu bionic/main armhf gettext armhf 0.19.8.1-4ubuntu1 [1014 kB] Get:60 http://ftpmaster.internal/ubuntu bionic/main armhf intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:61 http://ftpmaster.internal/ubuntu bionic/main armhf po-debconf all 1.0.20 [232 kB] Get:62 http://ftpmaster.internal/ubuntu bionic/main armhf debhelper all 10.10.9ubuntu1 [871 kB] Get:63 http://ftpmaster.internal/ubuntu bionic/main armhf liburi-perl all 1.72-2 [76.6 kB] Get:64 http://ftpmaster.internal/ubuntu bionic/main armhf libencode-locale-perl all 1.05-1 [12.3 kB] Get:65 http://ftpmaster.internal/ubuntu bionic/main armhf libhttp-date-perl all 6.02-1 [10.4 kB] Get:66 http://ftpmaster.internal/ubuntu bionic/main armhf libfile-listing-perl all 6.04-1 [9774 B] Get:67 http://ftpmaster.internal/ubuntu bionic/main armhf libhtml-tagset-perl all 3.20-3 [12.1 kB] Get:68 http://ftpmaster.internal/ubuntu bionic/main armhf libhtml-parser-perl armhf 3.72-3build1 [82.7 kB] Get:69 http://ftpmaster.internal/ubuntu bionic/main armhf libhtml-tree-perl all 5.07-1 [200 kB] Get:70 http://ftpmaster.internal/ubuntu bionic/main armhf libio-html-perl all 1.001-1 [14.9 kB] Get:71 http://ftpmaster.internal/ubuntu bionic/main armhf liblwp-mediatypes-perl all 6.02-1 [21.7 kB] Get:72 http://ftpmaster.internal/ubuntu bionic/main armhf libhttp-message-perl all 6.13-1 [69.7 kB] Get:73 http://ftpmaster.internal/ubuntu bionic/main armhf libhttp-cookies-perl all 6.04-1 [17.2 kB] Get:74 http://ftpmaster.internal/ubuntu bionic/main armhf libhttp-negotiate-perl all 6.00-2 [13.4 kB] Get:75 http://ftpmaster.internal/ubuntu bionic/main armhf perl-openssl-defaults armhf 3 [6816 B] Get:76 http://ftpmaster.internal/ubuntu bionic/main armhf libnet-ssleay-perl armhf 1.80-1build1 [251 kB] Get:77 http://ftpmaster.internal/ubuntu bionic/main armhf libio-socket-ssl-perl all 2.052-1 [168 kB] Get:78 http://ftpmaster.internal/ubuntu bionic/main armhf libnet-http-perl all 6.17-1 [22.7 kB] Get:79 http://ftpmaster.internal/ubuntu bionic/main armhf liblwp-protocol-https-perl all 6.07-2 [8284 B] Get:80 http://ftpmaster.internal/ubuntu bionic/main armhf libtry-tiny-perl all 0.28-1 [20.1 kB] Get:81 http://ftpmaster.internal/ubuntu bionic/main armhf libwww-robotrules-perl all 6.01-1 [14.1 kB] Get:82 http://ftpmaster.internal/ubuntu bionic/main armhf libwww-perl all 6.29-1 [137 kB] Get:83 http://ftpmaster.internal/ubuntu bionic/main armhf libxml-parser-perl armhf 2.44-2build3 [196 kB] Get:84 http://ftpmaster.internal/ubuntu bionic/main armhf intltool all 0.51.0-4 [44.3 kB] Get:85 http://ftpmaster.internal/ubuntu bionic/main armhf dh-translations all 131 [22.3 kB] Get:86 http://ftpmaster.internal/ubuntu bionic/main armhf python-six all 1.11.0-1 [11.1 kB] Get:87 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf python-pkg-resources all 36.7.1-1 [129 kB] Get:88 http://ftpmaster.internal/ubuntu bionic/main armhf python-scour all 0.32-2 [42.8 kB] Get:89 http://ftpmaster.internal/ubuntu bionic/main armhf cdbs all 0.4.151ubuntu2 [45.4 kB] Get:90 http://ftpmaster.internal/ubuntu bionic/main armhf dctrl-tools armhf 2.24-2build1 [52.9 kB] Get:91 http://ftpmaster.internal/ubuntu bionic/main armhf zip armhf 3.0-11build1 [145 kB] Get:92 http://ftpmaster.internal/ubuntu bionic/main armhf unzip armhf 6.0-21ubuntu1 [148 kB] Get:93 http://ftpmaster.internal/ubuntu bionic/main armhf libpaper1 armhf 1.1.24+nmu5ubuntu1 [12.9 kB] Get:94 http://ftpmaster.internal/ubuntu bionic/main armhf libpaper-utils armhf 1.1.24+nmu5ubuntu1 [8026 B] Get:95 http://ftpmaster.internal/ubuntu bionic/main armhf xdg-utils all 1.1.1-1ubuntu3 [59.4 kB] Get:96 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libblas3 armhf 3.7.1-4ubuntu1 [97.0 kB] Get:97 http://ftpmaster.internal/ubuntu bionic/main armhf libpixman-1-0 armhf 0.34.0-1 [156 kB] Get:98 http://ftpmaster.internal/ubuntu bionic/main armhf libxcb-render0 armhf 1.12-1ubuntu1 [13.9 kB] Get:99 http://ftpmaster.internal/ubuntu bionic/main armhf libxcb-shm0 armhf 1.12-1ubuntu1 [5298 B] Get:100 http://ftpmaster.internal/ubuntu bionic/main armhf libcairo2 armhf 1.15.8-2 [502 kB] Get:101 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libcurl3 armhf 7.55.1-1ubuntu3 [169 kB] Get:102 http://ftpmaster.internal/ubuntu bionic/main armhf libjpeg8 armhf 8c-2ubuntu8 [2202 B] Get:103 http://ftpmaster.internal/ubuntu bionic/main armhf libgfortran4 armhf 7.2.0-16ubuntu1 [200 kB] Get:104 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf liblapack3 armhf 3.7.1-4ubuntu1 [1627 kB] Get:105 http://ftpmaster.internal/ubuntu bionic/main armhf libthai-data all 0.1.27-1 [133 kB] Get:106 http://ftpmaster.internal/ubuntu bionic/main armhf libdatrie1 armhf 0.2.10-5 [14.2 kB] Get:107 http://ftpmaster.internal/ubuntu bionic/main armhf libthai0 armhf 0.1.27-1 [14.5 kB] Get:108 http://ftpmaster.internal/ubuntu bionic/main armhf libpango-1.0-0 armhf 1.40.13-2 [137 kB] Get:109 http://ftpmaster.internal/ubuntu bionic/main armhf libgraphite2-3 armhf 1.3.10-6 [65.5 kB] Get:110 http://ftpmaster.internal/ubuntu bionic/main armhf libharfbuzz0b armhf 1.7.1-1 [203 kB] Get:111 http://ftpmaster.internal/ubuntu bionic/main armhf libpangoft2-1.0-0 armhf 1.40.13-2 [28.5 kB] Get:112 http://ftpmaster.internal/ubuntu bionic/main armhf libpangocairo-1.0-0 armhf 1.40.13-2 [17.6 kB] Get:113 http://ftpmaster.internal/ubuntu bionic/main armhf libtcl8.6 armhf 8.6.7+dfsg-1 [762 kB] Get:114 http://ftpmaster.internal/ubuntu bionic/main armhf libtiff5 armhf 4.0.8-6 [133 kB] Get:115 http://ftpmaster.internal/ubuntu bionic/main armhf libtk8.6 armhf 8.6.7-1ubuntu1 [612 kB] Get:116 http://ftpmaster.internal/ubuntu bionic/main armhf libxt6 armhf 1:1.1.5-1 [129 kB] Get:117 http://ftpmaster.internal/ubuntu bionic/universe armhf r-base-core armhf 3.4.2-2ubuntu1 [22.8 MB] Get:118 http://ftpmaster.internal/ubuntu bionic/main armhf libgfortran-7-dev armhf 7.2.0-16ubuntu1 [248 kB] Get:119 http://ftpmaster.internal/ubuntu bionic/main armhf gfortran-7 armhf 7.2.0-16ubuntu1 [5625 kB] Get:120 http://ftpmaster.internal/ubuntu bionic/main armhf gfortran armhf 4:7.2.0-1ubuntu1 [1282 B] Get:121 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libblas-dev armhf 3.7.1-4ubuntu1 [104 kB] Get:122 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf liblapack-dev armhf 3.7.1-4ubuntu1 [1675 kB] Get:123 http://ftpmaster.internal/ubuntu bionic/main armhf libtinfo-dev armhf 6.0+20160625-1ubuntu1 [66.4 kB] Get:124 http://ftpmaster.internal/ubuntu bionic/main armhf libncurses5-dev armhf 6.0+20160625-1ubuntu1 [154 kB] Get:125 http://ftpmaster.internal/ubuntu bionic/main armhf libreadline-dev armhf 7.0-0ubuntu2 [113 kB] Get:126 http://ftpmaster.internal/ubuntu bionic/main armhf libjpeg-turbo8-dev armhf 1.5.2-0ubuntu5 [199 kB] Get:127 http://ftpmaster.internal/ubuntu bionic/main armhf libjpeg8-dev armhf 8c-2ubuntu8 [1554 B] Get:128 http://ftpmaster.internal/ubuntu bionic/main armhf libjpeg-dev armhf 8c-2ubuntu8 [1554 B] Get:129 http://ftpmaster.internal/ubuntu bionic/main armhf libpcre16-3 armhf 2:8.39-5ubuntu3 [128 kB] Get:130 http://ftpmaster.internal/ubuntu bionic/main armhf libpcre32-3 armhf 2:8.39-5ubuntu3 [121 kB] Get:131 http://ftpmaster.internal/ubuntu bionic/main armhf libpcrecpp0v5 armhf 2:8.39-5ubuntu3 [13.0 kB] Get:132 http://ftpmaster.internal/ubuntu bionic/main armhf libpcre3-dev armhf 2:8.39-5ubuntu3 [473 kB] Get:133 http://ftpmaster.internal/ubuntu bionic/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-0ubuntu2 [168 kB] Get:134 http://ftpmaster.internal/ubuntu bionic/main armhf libpng-dev armhf 1.6.34-1 [162 kB] Get:135 http://ftpmaster.internal/ubuntu bionic/main armhf libbz2-dev armhf 1.0.6-8.1 [27.6 kB] Get:136 http://ftpmaster.internal/ubuntu bionic/main armhf liblzma-dev armhf 5.2.2-1.3 [138 kB] Get:137 http://ftpmaster.internal/ubuntu bionic/main armhf icu-devtools armhf 60.1-1ubuntu2 [164 kB] Get:138 http://ftpmaster.internal/ubuntu bionic/main armhf libicu-dev armhf 60.1-1ubuntu2 [8682 kB] Get:139 http://ftpmaster.internal/ubuntu bionic/main armhf pkg-config armhf 0.29.1-0ubuntu2 [42.0 kB] Get:140 http://ftpmaster.internal/ubuntu bionic/universe armhf r-base-dev all 3.4.2-2ubuntu1 [4532 B] Get:141 http://ftpmaster.internal/ubuntu bionic/universe armhf dh-r all 20161219 [8828 B] Get:142 http://ftpmaster.internal/ubuntu bionic/universe armhf r-cran-littler armhf 0.3.2-1 [51.6 kB] Get:143 http://ftpmaster.internal/ubuntu bionic/universe armhf littler all 0.3.2-1 [2740 B] Get:144 http://ftpmaster.internal/ubuntu bionic/universe armhf r-cran-assertthat all 0.2.0-1ubuntu1 [44.5 kB] Get:145 http://ftpmaster.internal/ubuntu bionic/universe armhf r-cran-magrittr all 1.5-4 [153 kB] Get:146 http://ftpmaster.internal/ubuntu bionic/universe armhf r-cran-pkgkitten all 0.1.4-1.1 [18.2 kB] Get:147 http://ftpmaster.internal/ubuntu bionic/universe armhf r-cran-prettyunits all 1.0.2-2 [26.8 kB] Get:148 http://ftpmaster.internal/ubuntu bionic/universe armhf r-cran-r6 all 2.2.2-2 [239 kB] Get:149 http://ftpmaster.internal/ubuntu bionic/universe armhf r-cran-progress all 1.1.2-2 [39.5 kB] Get:150 http://ftpmaster.internal/ubuntu bionic/universe armhf r-cran-rcpp armhf 0.12.13-1 [3186 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 74.3 MB in 5s (14.8 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No schema files found: doing nothing. Setting up libio-html-perl (1.001-1) ... Setting up unzip (6.0-21ubuntu1) ... Setting up libtinfo-dev:armhf (6.0+20160625-1ubuntu1) ... Setting up dctrl-tools (2.24-2build1) ... Setting up libdatrie1:armhf (0.2.10-5) ... Setting up gettext-base (0.19.8.1-4ubuntu1) ... Setting up libjpeg-turbo8:armhf (1.5.2-0ubuntu5) ... Setting up libpipeline1:armhf (1.5.0-1) ... Setting up m4 (1.4.18-1) ... Setting up libbsd0:armhf (0.8.6-3) ... Setting up ucf (3.0036) ... Setting up libxml2:armhf (2.9.4+dfsg1-5.1ubuntu1) ... Setting up zip (3.0-11build1) ... Setting up libfreetype6:armhf (2.8-0.2ubuntu2) ... Setting up libmagic-mgc (1:5.32-1) ... Setting up libmagic1:armhf (1:5.32-1) ... Setting up libgraphite2-3:armhf (1.3.10-6) ... Setting up libcroco3:armhf (0.6.12-1) ... Setting up libncurses5-dev:armhf (6.0+20160625-1ubuntu1) ... Setting up pkg-config (0.29.1-0ubuntu2) ... Setting up libpixman-1-0:armhf (0.34.0-1) ... Setting up libblas3:armhf (3.7.1-4ubuntu1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libjpeg-turbo8-dev:armhf (1.5.2-0ubuntu5) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... Setting up autotools-dev (20161112.1+nmu1) ... Setting up liburi-perl (1.72-2) ... Processing triggers for systemd (235-3ubuntu2) ... Setting up libhtml-parser-perl (3.72-3build1) ... Setting up libgfortran-7-dev:armhf (7.2.0-16ubuntu1) ... Setting up libreadline-dev:armhf (7.0-0ubuntu2) ... Setting up gfortran-7 (7.2.0-16ubuntu1) ... Setting up libpcrecpp0v5:armhf (2:8.39-5ubuntu3) ... Setting up libpcre32-3:armhf (2:8.39-5ubuntu3) ... Setting up libnet-http-perl (6.17-1) ... Setting up icu-devtools (60.1-1ubuntu2) ... Setting up libpcre16-3:armhf (2:8.39-5ubuntu3) ... Setting up libtcl8.6:armhf (8.6.7+dfsg-1) ... Setting up libthai-data (0.1.27-1) ... Setting up liblzma-dev:armhf (5.2.2-1.3) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up bsdmainutils (9.0.14ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up x11-common (1:7.7+19ubuntu3) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up xdg-utils (1.1.1-1ubuntu3) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up libx11-data (2:1.6.4-3) ... Setting up libpython2.7-stdlib:armhf (2.7.14-2ubuntu2) ... Setting up libxau6:armhf (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-4ubuntu1) ... Setting up netbase (5.4) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.040-1) ... Setting up libjpeg8:armhf (8c-2ubuntu8) ... Setting up libpaper1:armhf (1.1.24+nmu5ubuntu1) ... Creating config file /etc/papersize with new version Setting up gfortran (4:7.2.0-1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libpaper-utils (1.1.24+nmu5ubuntu1) ... Setting up libpcre3-dev:armhf (2:8.39-5ubuntu3) ... Setting up fontconfig-config (2.12.6-0ubuntu1) ... Setting up libhttp-date-perl (6.02-1) ... Setting up gettext (0.19.8.1-4ubuntu1) ... Setting up libblas-dev:armhf (3.7.1-4ubuntu1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode Setting up libnet-ssleay-perl (1.80-1build1) ... Setting up liblapack3:armhf (3.7.1-4ubuntu1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up python2.7 (2.7.14-2ubuntu2) ... Setting up libharfbuzz0b:armhf (1.7.1-1) ... Setting up libtiff5:armhf (4.0.8-6) ... Setting up autoconf (2.69-11) ... Setting up libthai0:armhf (0.1.27-1) ... Setting up libicu-dev (60.1-1ubuntu2) ... Setting up file (1:5.32-1) ... Setting up libio-socket-ssl-perl (2.052-1) ... Setting up libhtml-tree-perl (5.07-1) ... Setting up libpython-stdlib:armhf (2.7.14-2ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libjpeg8-dev:armhf (8c-2ubuntu8) ... Setting up libjpeg-dev:armhf (8c-2ubuntu8) ... Setting up automake (1:1.15.1-3ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up libice6:armhf (2:1.0.9-2) ... Setting up libfile-listing-perl (6.04-1) ... Setting up man-db (2.7.6.1-4) ... Not building database; man-db/auto-update is not 'true'. Setting up libhttp-message-perl (6.13-1) ... Setting up libpng-dev:armhf (1.6.34-1) ... Setting up libxcb1:armhf (1.12-1ubuntu1) ... Setting up python (2.7.14-2ubuntu1) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up liblapack-dev:armhf (3.7.1-4ubuntu1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode Setting up libtool (2.4.6-2) ... Setting up libfontconfig1:armhf (2.12.6-0ubuntu1) ... Setting up libsm6:armhf (2:1.2.2-1) ... Setting up libxcb-render0:armhf (1.12-1ubuntu1) ... Setting up po-debconf (1.0.20) ... Setting up libhttp-cookies-perl (6.04-1) ... Setting up libx11-6:armhf (2:1.6.4-3) ... Setting up python-pkg-resources (36.7.1-1) ... Setting up libxmuu1:armhf (2:1.1.2-2) ... Setting up python-six (1.11.0-1) ... Setting up python-scour (0.32-2) ... Setting up libxcb-shm0:armhf (1.12-1ubuntu1) ... Setting up libxt6:armhf (1:1.1.5-1) ... Setting up libxrender1:armhf (1:0.9.10-1) ... Setting up libxft2:armhf (2.3.2-1) ... Setting up fontconfig (2.12.6-0ubuntu1) ... Regenerating fonts cache... done. Setting up libxext6:armhf (2:1.3.3-1) ... Setting up libxss1:armhf (1:1.2.2-1) ... Setting up xauth (1:1.0.10-1) ... Setting up libpango-1.0-0:armhf (1.40.13-2) ... Setting up libcairo2:armhf (1.15.8-2) ... Setting up libtk8.6:armhf (8.6.7-1ubuntu1) ... Setting up libpangoft2-1.0-0:armhf (1.40.13-2) ... Setting up libpangocairo-1.0-0:armhf (1.40.13-2) ... Setting up r-base-core (3.4.2-2ubuntu1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-littler (0.3.2-1) ... Setting up littler (0.3.2-1) ... Setting up r-cran-assertthat (0.2.0-1ubuntu1) ... Setting up r-cran-pkgkitten (0.1.4-1.1) ... Setting up r-cran-rcpp (0.12.13-1) ... Setting up r-cran-r6 (2.2.2-2) ... Setting up r-cran-magrittr (1.5-4) ... Setting up r-cran-prettyunits (1.0.2-2) ... Setting up r-cran-progress (1.1.2-2) ... Setting up dh-strip-nondeterminism (0.040-1) ... Setting up libwww-perl (6.29-1) ... Setting up dh-autoreconf (15) ... Setting up liblwp-protocol-https-perl (6.07-2) ... Setting up libxml-parser-perl (2.44-2build3) ... Setting up debhelper (10.10.9ubuntu1) ... Setting up intltool (0.51.0-4) ... Setting up dh-translations (131) ... Setting up cdbs (0.4.151ubuntu2) ... Setting up r-base-dev (3.4.2-2ubuntu1) ... Setting up dh-r (20161219) ... Setting up sbuild-build-depends-r-cran-rncl-dummy (0.invalid.0) ... (Reading database ... 19668 files and directories currently installed.) Purging configuration files for pkg-create-dbgsym (0.73) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... Processing triggers for systemd (235-3ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-101-generic arm64 (armv7l) Toolchain package versions: binutils_2.29.1-9ubuntu1 dpkg-dev_1.19.0.4ubuntu1 g++-7_7.2.0-16ubuntu1 gcc-7_7.2.0-16ubuntu1 libc6-dev_2.26-0ubuntu2 libstdc++-7-dev_7.2.0-16ubuntu1 libstdc++6_7.2.0-16ubuntu1 linux-libc-dev_4.13.0-17.20 Package versions: adduser_3.113+nmu3ubuntu5 advancecomp_2.0-1 apt_1.6~alpha5 apt-transport-https_1.6~alpha5 autoconf_2.69-11 automake_1:1.15.1-3ubuntu1 autopoint_0.19.8.1-4ubuntu1 autotools-dev_20161112.1+nmu1 base-files_10ubuntu1 base-passwd_3.5.44 bash_4.4-5ubuntu1 binutils_2.29.1-9ubuntu1 binutils-arm-linux-gnueabihf_2.29.1-9ubuntu1 binutils-common_2.29.1-9ubuntu1 bsdmainutils_9.0.14ubuntu1 bsdutils_1:2.30.2-0.1ubuntu1 build-essential_12.4ubuntu1 bzip2_1.0.6-8.1 ca-certificates_20170717 cdbs_0.4.151ubuntu2 coreutils_8.26-3ubuntu4 cpp_4:7.2.0-1ubuntu1 cpp-7_7.2.0-16ubuntu1 dash_0.5.8-2.3ubuntu1 dctrl-tools_2.24-2build1 debconf_1.5.65 debhelper_10.10.9ubuntu1 debianutils_4.8.3 dh-autoreconf_15 dh-r_20161219 dh-strip-nondeterminism_0.040-1 dh-translations_131 diffutils_1:3.6-1 dmsetup_2:1.02.137-2ubuntu3 dpkg_1.19.0.4ubuntu1 dpkg-dev_1.19.0.4ubuntu1 e2fslibs_1.43.7-1 e2fsprogs_1.43.7-1 fakeroot_1.21-1ubuntu2 fdisk_2.30.2-0.1ubuntu1 file_1:5.32-1 findutils_4.6.0+git+20170828-2 fontconfig_2.12.6-0ubuntu1 fontconfig-config_2.12.6-0ubuntu1 fonts-dejavu-core_2.37-1 g++_4:7.2.0-1ubuntu1 g++-7_7.2.0-16ubuntu1 gcc_4:7.2.0-1ubuntu1 gcc-7_7.2.0-16ubuntu1 gcc-7-base_7.2.0-16ubuntu1 gettext_0.19.8.1-4ubuntu1 gettext-base_0.19.8.1-4ubuntu1 gfortran_4:7.2.0-1ubuntu1 gfortran-7_7.2.0-16ubuntu1 gnupg_2.1.15-1ubuntu8 gnupg-agent_2.1.15-1ubuntu8 gpgv_2.1.15-1ubuntu8 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5ubuntu1 hostname_3.18 icu-devtools_60.1-1ubuntu2 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procps_2:3.3.12-1ubuntu2 python_2.7.14-2ubuntu1 python-minimal_2.7.14-2ubuntu1 python-pkg-resources_36.7.1-1 python-scour_0.32-2 python-six_1.11.0-1 python2.7_2.7.14-2ubuntu2 python2.7-minimal_2.7.14-2ubuntu2 r-base-core_3.4.2-2ubuntu1 r-base-dev_3.4.2-2ubuntu1 r-cran-assertthat_0.2.0-1ubuntu1 r-cran-littler_0.3.2-1 r-cran-magrittr_1.5-4 r-cran-pkgkitten_0.1.4-1.1 r-cran-prettyunits_1.0.2-2 r-cran-progress_1.1.2-2 r-cran-r6_2.2.2-2 r-cran-rcpp_0.12.13-1 readline-common_7.0-0ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-cran-rncl-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.11 systemd_235-3ubuntu2 systemd-sysv_235-3ubuntu2 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.29b-2 tzdata_2017c-1 ubuntu-keyring_2016.10.27 ucf_3.0036 unzip_6.0-21ubuntu1 util-linux_2.30.2-0.1ubuntu1 x11-common_1:7.7+19ubuntu3 xauth_1:1.0.10-1 xdg-utils_1.1.1-1ubuntu3 xz-utils_5.2.2-1.3 zip_3.0-11build1 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Wed Nov 29 19:57:23 2017 UTC gpgv: using RSA key gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-cran-rncl_0.8.2-2.dsc dpkg-source: info: extracting r-cran-rncl in r-cran-rncl-0.8.2 dpkg-source: info: unpacking r-cran-rncl_0.8.2.orig.tar.gz dpkg-source: info: unpacking r-cran-rncl_0.8.2-2.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-13794844 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-13794844 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-13794844 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package r-cran-rncl dpkg-buildpackage: info: source version 0.8.2-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build r-cran-rncl-0.8.2 dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean --buildsystem R dh_testdir -O--buildsystem=R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules build-arch dh build-arch --buildsystem R dh_testdir -a -O--buildsystem=R dh_update_autotools_config -a -O--buildsystem=R dh_autoreconf -a -O--buildsystem=R dh_auto_configure -a -O--buildsystem=R dh_auto_build -a -O--buildsystem=R dh_auto_test -a -O--buildsystem=R create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --buildsystem R dh_testroot -a -O--buildsystem=R dh_prep -a -O--buildsystem=R dh_installdirs -a -O--buildsystem=R dh_auto_install -a -O--buildsystem=R I: R Package: rncl Version: 0.8.2 I: Building using R version 3.4.2-2ubuntu1 I: R API version: r-api-3.4 I: Using built-time from d/changelog: Wed, 29 Nov 2017 20:40:01 +0100 mkdir -p /<>/debian/r-cran-rncl/usr/lib/R/site-library R CMD INSTALL -l /<>/debian/r-cran-rncl/usr/lib/R/site-library --clean . "--built-timestamp='Wed, 29 Nov 2017 20:40:01 +0100'" * installing *source* package ‘rncl’ ... ** package ‘rncl’ successfully unpacked and MD5 sums checked ** libs make[1]: Entering directory '/<>/src' g++ -I/usr/share/R/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/progress/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-PsjZY2/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c GetNCL.cpp -o GetNCL.o g++ -I/usr/share/R/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/progress/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-PsjZY2/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o g++ -I/usr/share/R/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/progress/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-PsjZY2/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c collapse_singles.cpp -o collapse_singles.o g++ -I/usr/share/R/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/progress/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-PsjZY2/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nxsassumptionsblock.cpp -o nxsassumptionsblock.o In file included from /usr/include/c++/7/vector:63:0, from ncl/nxsassumptionsblock.h:23, from nxsassumptionsblock.cpp:22: /usr/include/c++/7/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = ProcessedNxsToken*; bool _TrivialValueTypes = false]’: /usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __uninit_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h: In member function ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = ProcessedNxsToken; _Alloc = std::allocator]’: /usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __uninit_copy(__first, __last, __result); ^ g++ -I/usr/share/R/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/progress/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-PsjZY2/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nxsblock.cpp -o nxsblock.o g++ -I/usr/share/R/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/progress/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-PsjZY2/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nxscharactersblock.cpp -o nxscharactersblock.o In file included from /usr/include/c++/7/vector:69:0, from ./ncl/nxsdefs.h:23, from ncl/nxscharactersblock.h:27, from nxscharactersblock.cpp:26: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from ./ncl/nxsdefs.h:23, from ncl/nxscharactersblock.h:27, from nxscharactersblock.cpp:26: /usr/include/c++/7/bits/stl_vector.h: In member function ‘std::vector NxsTransformationManager::GetDoubleWeights(const string&) const’: /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from ./ncl/nxsdefs.h:23, from ncl/nxscharactersblock.h:27, from nxscharactersblock.cpp:26: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from ./ncl/nxsdefs.h:23, from ncl/nxscharactersblock.h:27, from nxscharactersblock.cpp:26: /usr/include/c++/7/bits/stl_vector.h: In member function ‘bool NxsCharactersBlock::HandleNextContinuousState(NxsToken&, unsigned int, unsigned int, NxsCharactersBlock::ContinuousCharRow&, const NxsString&)’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:63:0, from ./ncl/nxsdefs.h:23, from ncl/nxscharactersblock.h:27, from nxscharactersblock.cpp:26: /usr/include/c++/7/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = ProcessedNxsToken*; bool _TrivialValueTypes = false]’: /usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __uninit_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h: In member function ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = ProcessedNxsToken; _Alloc = std::allocator]’: /usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __uninit_copy(__first, __last, __result); ^ g++ -I/usr/share/R/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/progress/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-PsjZY2/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nxscxxdiscretematrix.cpp -o nxscxxdiscretematrix.o In file included from /usr/include/c++/7/vector:69:0, from ncl/nxscxxdiscretematrix.h:25, from nxscxxdiscretematrix.cpp:20: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const NxsCharacterPattern&}; _Tp = NxsCharacterPattern; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from ncl/nxscxxdiscretematrix.h:25, from nxscxxdiscretematrix.cpp:20: /usr/include/c++/7/bits/stl_vector.h: In function ‘void NxsConsumePatternSetToPatternVector(std::set&, std::vector&, const std::vector*, std::vector*, std::vector >*)’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/7/map:60:0, from ./ncl/nxsdefs.h:24, from ncl/nxscxxdiscretematrix.h:26, from nxscxxdiscretematrix.cpp:20: /usr/include/c++/7/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = NxsCharacterPattern; _Val = NxsCharacterPattern; _KeyOfValue = std::_Identity; _Compare = std::less; _Alloc = std::allocator]’: /usr/include/c++/7/bits/stl_tree.h:2130:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::less, std::allocator >::const_iterator {aka std::_Rb_tree_const_iterator}’ changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -I/usr/share/R/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/progress/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-PsjZY2/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nxsdatablock.cpp -o nxsdatablock.o g++ -I/usr/share/R/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/progress/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-PsjZY2/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nxsdistancedatum.cpp -o nxsdistancedatum.o g++ -I/usr/share/R/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/progress/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-PsjZY2/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nxsdistancesblock.cpp -o nxsdistancesblock.o g++ -I/usr/share/R/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/progress/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-PsjZY2/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nxsemptyblock.cpp -o nxsemptyblock.o g++ -I/usr/share/R/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/progress/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-PsjZY2/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nxsexception.cpp -o nxsexception.o g++ -I/usr/share/R/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/progress/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-PsjZY2/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nxsmultiformat.cpp -o nxsmultiformat.o g++ -I/usr/share/R/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/progress/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-PsjZY2/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nxspublicblocks.cpp -o nxspublicblocks.o g++ -I/usr/share/R/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/progress/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-PsjZY2/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nxsreader.cpp -o nxsreader.o g++ -I/usr/share/R/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/progress/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-PsjZY2/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nxssetreader.cpp -o nxssetreader.o g++ -I/usr/share/R/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/progress/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-PsjZY2/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nxsstring.cpp -o nxsstring.o g++ -I/usr/share/R/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/progress/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-PsjZY2/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nxstaxaassociationblock.cpp -o nxstaxaassociationblock.o g++ -I/usr/share/R/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/progress/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-PsjZY2/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nxstaxablock.cpp -o nxstaxablock.o g++ -I/usr/share/R/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/progress/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-PsjZY2/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nxstoken.cpp -o nxstoken.o In file included from /usr/include/c++/7/vector:69:0, from ./ncl/nxsdefs.h:23, from ./ncl/nxsstring.h:29, from ./ncl/nxsexception.h:23, from ncl/nxstoken.h:23, from nxstoken.cpp:22: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {ProcessedNxsToken}; _Tp = ProcessedNxsToken; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ProcessedNxsToken}; _Tp = ProcessedNxsToken; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -I/usr/share/R/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/progress/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-PsjZY2/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nxstreesblock.cpp -o nxstreesblock.o In file included from /usr/include/c++/7/vector:69:0, from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59, from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27, from nxstreesblock.cpp:20: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {NxsFullTreeDescription}; _Tp = NxsFullTreeDescription; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {NxsFullTreeDescription}; _Tp = NxsFullTreeDescription; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/map:60:0, from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:56, from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27, from nxstreesblock.cpp:20: /usr/include/c++/7/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/map:61:0, from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:56, from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27, from nxstreesblock.cpp:20: /usr/include/c++/7/bits/stl_map.h: In member function ‘std::vector > NxsSimpleTree::GetDblPathDistances(bool) const’: /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator {aka std::_Rb_tree_const_iterator >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ In file included from /usr/include/c++/7/vector:63:0, from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59, from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27, from nxstreesblock.cpp:20: /usr/include/c++/7/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = ProcessedNxsToken*; bool _TrivialValueTypes = false]’: /usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __uninit_copy(_InputIterator __first, _InputIterator __last, ^~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_uninitialized.h:76:9: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_uninitialized.h: In member function ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = ProcessedNxsToken; _Alloc = std::allocator]’: /usr/include/c++/7/bits/stl_uninitialized.h:134:41: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __uninit_copy(__first, __last, __result); ^ g++ -I/usr/share/R/include -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/progress/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-PsjZY2/r-base-3.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nxsunalignedblock.cpp -o nxsunalignedblock.o g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o rncl.so GetNCL.o RcppExports.o collapse_singles.o nxsassumptionsblock.o nxsblock.o nxscharactersblock.o nxscxxdiscretematrix.o nxsdatablock.o nxsdistancedatum.o nxsdistancesblock.o nxsemptyblock.o nxsexception.o nxsmultiformat.o nxspublicblocks.o nxsreader.o nxssetreader.o nxsstring.o nxstaxaassociationblock.o nxstaxablock.o nxstoken.o nxstreesblock.o nxsunalignedblock.o -L/usr/lib/R/lib -lR make[1]: Leaving directory '/<>/src' make[1]: Entering directory '/<>/src' make[1]: Leaving directory '/<>/src' installing to /<>/debian/r-cran-rncl/usr/lib/R/site-library/rncl/libs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (rncl) rm -f /<>/debian/r-cran-rncl/usr/lib/R/site-library/rncl/LICENSE Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 290. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 291. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 294. W: Ignoring specified R dependency: R (>= 3.1.1) I: Using r-cran-testthat for Suggests:testthat I: Using r-cran-ape for Suggests:ape I: Using r-cran-rcpp for Imports:Rcpp (>= 0.11.0) I: Using r-cran-progress for Imports:progress (>= 1.1.2) debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install find debian -name LICENSE -delete make[1]: Leaving directory '/<>' dh_installdocs -a -O--buildsystem=R dh_installchangelogs -a -O--buildsystem=R dh_installexamples -a -O--buildsystem=R dh_installman -a -O--buildsystem=R dh_installcatalogs -a -O--buildsystem=R dh_installcron -a -O--buildsystem=R dh_installdebconf -a -O--buildsystem=R dh_installemacsen -a -O--buildsystem=R dh_installifupdown -a -O--buildsystem=R dh_installinfo -a -O--buildsystem=R dh_systemd_enable -a -O--buildsystem=R dh_installinit -a -O--buildsystem=R dh_systemd_start -a -O--buildsystem=R dh_installmenu -a -O--buildsystem=R dh_installmime -a -O--buildsystem=R dh_installmodules -a -O--buildsystem=R dh_installlogcheck -a -O--buildsystem=R dh_installlogrotate -a -O--buildsystem=R dh_installpam -a -O--buildsystem=R dh_installppp -a -O--buildsystem=R dh_installudev -a -O--buildsystem=R dh_installgsettings -a -O--buildsystem=R dh_bugfiles -a -O--buildsystem=R dh_ucf -a -O--buildsystem=R dh_lintian -a -O--buildsystem=R dh_gconf -a -O--buildsystem=R dh_icons -a -O--buildsystem=R dh_perl -a -O--buildsystem=R dh_usrlocal -a -O--buildsystem=R dh_link -a -O--buildsystem=R dh_installwm -a -O--buildsystem=R dh_installxfonts -a -O--buildsystem=R dh_strip_nondeterminism -a -O--buildsystem=R dh_compress -a -O--buildsystem=R debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms find debian -name "*.nex" -exec chmod -x \{\} \; make[1]: Leaving directory '/<>' dh_missing -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -a -O--buildsystem=R dh_gencontrol -a -O--buildsystem=R dh_md5sums -a -O--buildsystem=R dh_builddeb -a -O--buildsystem=R INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 pkgstriptranslations: processing r-cran-rncl-dbgsym (in debian/.debhelper/r-cran-rncl/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing r-cran-rncl (in debian/r-cran-rncl); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-cran-rncl/DEBIAN/control, package r-cran-rncl, directory debian/r-cran-rncl pkgstripfiles: processing control file: debian/.debhelper/r-cran-rncl/dbgsym-root/DEBIAN/control, package r-cran-rncl-dbgsym, directory debian/.debhelper/r-cran-rncl/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-cran-rncl-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-cran-rncl-dbgsym' in 'debian/.debhelper/scratch-space/build-r-cran-rncl/r-cran-rncl-dbgsym_0.8.2-2_armhf.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-cran-rncl ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-cran-rncl' in '../r-cran-rncl_0.8.2-2_armhf.deb'. Renaming r-cran-rncl-dbgsym_0.8.2-2_armhf.deb to r-cran-rncl-dbgsym_0.8.2-2_armhf.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../r-cran-rncl_0.8.2-2_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build r-cran-rncl-0.8.2 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20171130-0519 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-cran-rncl_0.8.2-2_armhf.changes: ---------------------------------- Format: 1.8 Date: Wed, 29 Nov 2017 20:40:01 +0100 Source: r-cran-rncl Binary: r-cran-rncl Architecture: armhf Version: 0.8.2-2 Distribution: bionic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: r-cran-rncl - GNU R interface to the Nexus Class Library Changes: r-cran-rncl (0.8.2-2) unstable; urgency=medium . * Moved packaging from SVN to Git * Secure watch file * Standards-Version: 4.1.1 Checksums-Sha1: 6f0f0325185bb1f869a9d09621dd614cf8547b20 5896764 r-cran-rncl-dbgsym_0.8.2-2_armhf.ddeb e148f962587642b5a97bb9f13c9367fe61f551b9 9860 r-cran-rncl_0.8.2-2_armhf.buildinfo 29cc25d014b215c53b07d360c37d0fe4095c9d8f 367132 r-cran-rncl_0.8.2-2_armhf.deb Checksums-Sha256: 4dfe967b38868d4dbcdad5d5c79622b4c9294ce468682e433964a1f9e5e5a226 5896764 r-cran-rncl-dbgsym_0.8.2-2_armhf.ddeb 47c7f88cc51a592e8c78f6a2957d2b99fbebb37d562c90f5146db60ebdcd387b 9860 r-cran-rncl_0.8.2-2_armhf.buildinfo 351e7895ebc083ff3e1d3cb8d8eb68c23c5325164f3e7e49794569f866018afd 367132 r-cran-rncl_0.8.2-2_armhf.deb Files: ed974110644ea1ddd6b24dae451dc54e 5896764 debug optional r-cran-rncl-dbgsym_0.8.2-2_armhf.ddeb e845d11da3e37622a7366d7c4e3c5220 9860 gnu-r optional r-cran-rncl_0.8.2-2_armhf.buildinfo 9483534a365f139e700987f3b81f9f87 367132 gnu-r optional r-cran-rncl_0.8.2-2_armhf.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-cran-rncl_0.8.2-2_armhf.deb ----------------------------- new debian package, version 2.0. size 367132 bytes: control archive=2208 bytes. 860 bytes, 16 lines control 4030 bytes, 49 lines md5sums Package: r-cran-rncl Version: 0.8.2-2 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 871 Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2), r-base-core (>= 3.4.2-2ubuntu1), r-api-3.4, r-cran-rcpp (>= 0.11.0), r-cran-progress (>= 1.1.2) Suggests: r-cran-testthat, r-cran-ape Section: gnu-r Priority: optional Homepage: https://cran.r-project.org/package=rncl Description: GNU R interface to the Nexus Class Library This R package provides an interface to the Nexus Class Library which allows parsing of NEXUS, Newick and other phylogenetic tree file formats. It provides elements of the file that can be used to build phylogenetic objects such as ape's 'phylo' or phylobase's 'phylo4(d)'. drwxr-xr-x root/root 0 2017-11-29 19:40 ./ drwxr-xr-x root/root 0 2017-11-29 19:40 ./usr/ drwxr-xr-x root/root 0 2017-11-29 19:40 ./usr/lib/ drwxr-xr-x root/root 0 2017-11-29 19:40 ./usr/lib/R/ drwxr-xr-x root/root 0 2017-11-29 19:40 ./usr/lib/R/site-library/ drwxr-xr-x root/root 0 2017-11-29 19:40 ./usr/lib/R/site-library/rncl/ -rw-r--r-- root/root 1426 2017-11-29 19:40 ./usr/lib/R/site-library/rncl/DESCRIPTION -rw-r--r-- root/root 131 2017-11-29 19:40 ./usr/lib/R/site-library/rncl/INDEX drwxr-xr-x root/root 0 2017-11-29 19:40 ./usr/lib/R/site-library/rncl/Meta/ -rw-r--r-- root/root 326 2017-11-29 19:40 ./usr/lib/R/site-library/rncl/Meta/Rd.rds -rw-r--r-- root/root 112 2017-11-29 19:40 ./usr/lib/R/site-library/rncl/Meta/features.rds -rw-r--r-- root/root 344 2017-11-29 19:40 ./usr/lib/R/site-library/rncl/Meta/hsearch.rds -rw-r--r-- root/root 148 2017-11-29 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-------------------------------------------------------------------------------- Finished at 20171130-0519 Build needed 00:09:00, 14716k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-13794844 Scanning for processes to kill in build PACKAGEBUILD-13794844 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-13794844 Stopping target for build PACKAGEBUILD-13794844 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-13794844 Removing build PACKAGEBUILD-13794844