https://launchpad.net/ubuntu/+source/r-cran-seurat/3.1.5-1/+build/19218078 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-012 4.4.0-177-generic #207-Ubuntu SMP Mon Mar 16 01:17:51 UTC 2020 aarch64 Buildd toolchain package versions: launchpad-buildd_189 python-lpbuildd_189 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.8 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 28 Apr 14:31:41 ntpdate[1875]: adjust time server 10.211.37.1 offset -0.025879 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=groovy --arch=armhf PACKAGEBUILD-19218078 --image-type chroot /home/buildd/filecache-default/a77e1afdcf3761e08e999e63510e3d2f5c5a8a8d Creating target for build PACKAGEBUILD-19218078 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=groovy --arch=armhf PACKAGEBUILD-19218078 Starting target for build PACKAGEBUILD-19218078 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=groovy --arch=armhf PACKAGEBUILD-19218078 'deb http://ftpmaster.internal/ubuntu groovy main universe' 'deb http://ftpmaster.internal/ubuntu groovy-security main universe' 'deb http://ftpmaster.internal/ubuntu groovy-updates main universe' 'deb http://ftpmaster.internal/ubuntu groovy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-19218078 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=groovy --arch=armhf PACKAGEBUILD-19218078 Updating target for build PACKAGEBUILD-19218078 Get:1 http://ftpmaster.internal/ubuntu groovy InRelease [268 kB] Get:2 http://ftpmaster.internal/ubuntu groovy-security InRelease [89.1 kB] Get:3 http://ftpmaster.internal/ubuntu groovy-updates InRelease [89.1 kB] Get:4 http://ftpmaster.internal/ubuntu groovy-proposed InRelease [119 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main armhf Packages [934 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main Translation-en [506 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/universe armhf Packages [8408 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/universe Translation-en [5173 kB] Get:9 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf Packages [94.1 kB] Get:10 http://ftpmaster.internal/ubuntu groovy-proposed/main Translation-en [58.7 kB] Get:11 http://ftpmaster.internal/ubuntu groovy-proposed/universe armhf Packages [672 kB] Get:12 http://ftpmaster.internal/ubuntu groovy-proposed/universe Translation-en [503 kB] Fetched 16.9 MB in 11s (1545 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: base-files cpp-9 dash debconf g++-9 gcc-10-base gcc-9 gcc-9-base libacl1 libasan5 libatomic1 libcap2 libcc1-0 libgcc-9-dev libgcc-s1 libgomp1 libidn2-0 libncurses6 libncursesw6 libperl5.30 libsqlite3-0 libstdc++-9-dev libstdc++6 libsystemd0 libtinfo6 libubsan1 libudev1 make ncurses-base ncurses-bin perl perl-base perl-modules-5.30 systemd systemd-sysv systemd-timesyncd 36 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 35.8 MB of archives. After this operation, 26.6 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu groovy/main armhf base-files armhf 11ubuntu6 [59.6 kB] Get:2 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libperl5.30 armhf 5.30.0-10 [3295 kB] Get:3 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf perl armhf 5.30.0-10 [224 kB] Get:4 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf perl-base armhf 5.30.0-10 [1408 kB] Get:5 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf perl-modules-5.30 all 5.30.0-10 [2738 kB] Get:6 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf debconf all 1.5.74 [121 kB] Get:7 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf dash armhf 0.5.10.2-7 [79.2 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/main armhf ncurses-bin armhf 6.2-1 [164 kB] Get:9 http://ftpmaster.internal/ubuntu groovy/main armhf ncurses-base all 6.2-1 [18.7 kB] Get:10 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf systemd-timesyncd armhf 245.5-1ubuntu1 [27.9 kB] Get:11 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf systemd-sysv armhf 245.5-1ubuntu1 [10.3 kB] Get:12 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libacl1 armhf 2.2.53-7 [16.1 kB] Get:13 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libcap2 armhf 1:2.33-1 [15.7 kB] Get:14 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libidn2-0 armhf 2.3.0-1 [49.9 kB] Get:15 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf systemd armhf 245.5-1ubuntu1 [3644 kB] Get:16 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libsystemd0 armhf 245.5-1ubuntu1 [249 kB] Get:17 http://ftpmaster.internal/ubuntu groovy/main armhf libatomic1 armhf 10-20200425-1ubuntu2 [7204 B] Get:18 http://ftpmaster.internal/ubuntu groovy/main armhf libubsan1 armhf 10-20200425-1ubuntu2 [121 kB] Get:19 http://ftpmaster.internal/ubuntu groovy/main armhf gcc-10-base armhf 10-20200425-1ubuntu2 [19.3 kB] Get:20 http://ftpmaster.internal/ubuntu groovy/main armhf libstdc++6 armhf 10-20200425-1ubuntu2 [440 kB] Get:21 http://ftpmaster.internal/ubuntu groovy/main armhf libgomp1 armhf 10-20200425-1ubuntu2 [86.8 kB] Get:22 http://ftpmaster.internal/ubuntu groovy/main armhf libcc1-0 armhf 10-20200425-1ubuntu2 [34.6 kB] Get:23 http://ftpmaster.internal/ubuntu groovy/main armhf libgcc-s1 armhf 10-20200425-1ubuntu2 [36.2 kB] Get:24 http://ftpmaster.internal/ubuntu groovy/main armhf libncurses6 armhf 6.2-1 [79.7 kB] Get:25 http://ftpmaster.internal/ubuntu groovy/main armhf libncursesw6 armhf 6.2-1 [106 kB] Get:26 http://ftpmaster.internal/ubuntu groovy/main armhf libtinfo6 armhf 6.2-1 [73.6 kB] Get:27 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libudev1 armhf 245.5-1ubuntu1 [70.2 kB] Get:28 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libsqlite3-0 armhf 3.31.1-5 [467 kB] Get:29 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libasan5 armhf 9.3.0-11ubuntu2 [386 kB] Get:30 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf g++-9 armhf 9.3.0-11ubuntu2 [6690 kB] Get:31 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf gcc-9 armhf 9.3.0-11ubuntu2 [6554 kB] Get:32 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libstdc++-9-dev armhf 9.3.0-11ubuntu2 [1783 kB] Get:33 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libgcc-9-dev armhf 9.3.0-11ubuntu2 [687 kB] Get:34 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf cpp-9 armhf 9.3.0-11ubuntu2 [5881 kB] Get:35 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf gcc-9-base armhf 9.3.0-11ubuntu2 [19.4 kB] Get:36 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf make armhf 4.2.1-1.3 [150 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 35.8 MB in 2s (20.5 MB/s) (Reading database ... 12562 files and directories currently installed.) 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Setting up libcc1-0:armhf (10-20200425-1ubuntu2) ... Setting up gcc-9-base:armhf (9.3.0-11ubuntu2) ... Setting up libasan5:armhf (9.3.0-11ubuntu2) ... Setting up perl (5.30.0-10) ... Setting up cpp-9 (9.3.0-11ubuntu2) ... Setting up libgcc-9-dev:armhf (9.3.0-11ubuntu2) ... Setting up gcc-9 (9.3.0-11ubuntu2) ... Setting up libstdc++-9-dev:armhf (9.3.0-11ubuntu2) ... Setting up g++-9 (9.3.0-11ubuntu2) ... Setting up systemd-timesyncd (245.5-1ubuntu1) ... Setting up systemd (245.5-1ubuntu1) ... Initializing machine ID from KVM UUID. Setting up systemd-sysv (245.5-1ubuntu1) ... Processing triggers for libc-bin (2.31-0ubuntu9) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-19218078 armhf groovy-proposed -c chroot:build-PACKAGEBUILD-19218078 --arch=armhf --dist=groovy-proposed --nolog r-cran-seurat_3.1.5-1.dsc Initiating build PACKAGEBUILD-19218078 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-177-generic #207-Ubuntu SMP Mon Mar 16 01:17:51 UTC 2020 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-012.buildd +==============================================================================+ | r-cran-seurat 3.1.5-1 (armhf) 28 Apr 2020 14:32 | +==============================================================================+ Package: r-cran-seurat Version: 3.1.5-1 Source Version: 3.1.5-1 Distribution: groovy-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/r-cran-seurat-B2X9Dt/r-cran-seurat-3.1.5' with '<>' I: NOTICE: Log filtering will replace 'build/r-cran-seurat-B2X9Dt' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-19218078/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-cran-seurat_3.1.5-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-xsvHWV/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-xsvHWV/apt_archive ./ InRelease Get:2 copy:/<>/resolver-xsvHWV/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-xsvHWV/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-xsvHWV/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-xsvHWV/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (72.5 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-xsvHWV/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (49.1 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12560 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper-compat (= 12), dh-r, r-base-dev, r-cran-ape, r-cran-cluster, r-cran-cowplot, r-cran-fitdistrplus, r-cran-future, r-cran-future.apply, r-cran-ggplot2 (>= 3.0.0), r-cran-ggrepel, r-cran-ggridges, r-cran-httr, r-cran-ica, r-cran-igraph, r-cran-irlba, r-cran-kernsmooth, r-cran-leiden, r-cran-lmtest, r-cran-mass, r-cran-matrix (>= 1.2-14), r-cran-patchwork, r-cran-pbapply, r-cran-plotly, r-cran-png, r-cran-rann, r-cran-rcolorbrewer, r-cran-rcpp, r-cran-rcppannoy, r-cran-reticulate, r-cran-rlang, r-cran-rocr, r-cran-rsvd, r-cran-rtsne, r-cran-scales, r-cran-sctransform, r-cran-tsne, r-cran-uwot, r-cran-rcppeigen, r-cran-rcppprogress Filtered Build-Depends: debhelper-compat (= 12), dh-r, r-base-dev, r-cran-ape, r-cran-cluster, r-cran-cowplot, r-cran-fitdistrplus, r-cran-future, r-cran-future.apply, r-cran-ggplot2 (>= 3.0.0), r-cran-ggrepel, r-cran-ggridges, r-cran-httr, r-cran-ica, r-cran-igraph, r-cran-irlba, r-cran-kernsmooth, r-cran-leiden, r-cran-lmtest, r-cran-mass, r-cran-matrix (>= 1.2-14), r-cran-patchwork, r-cran-pbapply, r-cran-plotly, r-cran-png, r-cran-rann, r-cran-rcolorbrewer, r-cran-rcpp, r-cran-rcppannoy, r-cran-reticulate, r-cran-rlang, r-cran-rocr, r-cran-rsvd, r-cran-rtsne, r-cran-scales, r-cran-sctransform, r-cran-tsne, r-cran-uwot, r-cran-rcppeigen, r-cran-rcppprogress dpkg-deb: building package 'sbuild-build-depends-r-cran-seurat-dummy' in '/<>/resolver-YZwcVG/apt_archive/sbuild-build-depends-r-cran-seurat-dummy.deb'. Ign:1 copy:/<>/resolver-YZwcVG/apt_archive ./ InRelease Get:2 copy:/<>/resolver-YZwcVG/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-YZwcVG/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-YZwcVG/apt_archive ./ Sources [434 B] Get:5 copy:/<>/resolver-YZwcVG/apt_archive ./ Packages [766 B] Fetched 3319 B in 0s (79.4 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install r-cran-seurat build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome fonts-glewlwyd fonts-glyphicons-halflings gettext gettext-base gfortran gfortran-9 groff-base icu-devtools intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libboost-dev libboost1.71-dev libbrotli1 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-9-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu-dev libicu66 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-microplugin.js libjs-sifter.js libjs-twitter-bootstrap-datepicker libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libmpdec2 libncurses-dev libncurses5-dev libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libuv1 libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db mime-support node-html5shiv node-normalize.css pkg-config po-debconf python3 python3-minimal python3.8 python3.8-minimal r-base-core r-base-dev r-cran-ape r-cran-askpass r-cran-assertthat r-cran-backports r-cran-base64enc r-cran-bh r-cran-bitops r-cran-callr r-cran-catools r-cran-cli r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-colourpicker r-cran-cowplot r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-data.table r-cran-desc r-cran-digest r-cran-dplyr r-cran-dqrng r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fitdistrplus r-cran-fnn r-cran-future r-cran-future.apply r-cran-gdata r-cran-ggplot2 r-cran-ggrepel r-cran-ggridges r-cran-globals r-cran-glue r-cran-gplots r-cran-gridextra r-cran-gtable r-cran-gtools r-cran-hexbin r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-ica r-cran-igraph r-cran-irlba r-cran-isoband r-cran-jsonlite r-cran-kernsmooth r-cran-labeling r-cran-later r-cran-lattice r-cran-lazyeval r-cran-leiden r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-lmtest r-cran-lsei r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mgcv r-cran-mime r-cran-miniui r-cran-munsell r-cran-nlme r-cran-npsurv r-cran-openssl r-cran-patchwork r-cran-pbapply r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plotly r-cran-plyr r-cran-png r-cran-praise r-cran-prettyunits r-cran-processx r-cran-promises r-cran-ps r-cran-purrr r-cran-r6 r-cran-rann r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppannoy r-cran-rcppeigen r-cran-rcppprogress r-cran-reshape2 r-cran-reticulate r-cran-rlang r-cran-rocr r-cran-rprojroot r-cran-rspectra r-cran-rstudioapi r-cran-rsvd r-cran-rtsne r-cran-scales r-cran-sctransform r-cran-shiny r-cran-shinyjs r-cran-sitmo r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tsne r-cran-utf8 r-cran-uwot r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xtable r-cran-yaml r-cran-zoo ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-9-multilib gfortran-9-doc libcoarrays-dev groff liblapack-doc libboost-doc libboost1.71-doc libboost-atomic1.71-dev libboost-chrono1.71-dev libboost-container1.71-dev libboost-context1.71-dev libboost-contract1.71-dev libboost-coroutine1.71-dev libboost-date-time1.71-dev libboost-exception1.71-dev libboost-fiber1.71-dev libboost-filesystem1.71-dev libboost-graph1.71-dev libboost-graph-parallel1.71-dev libboost-iostreams1.71-dev libboost-locale1.71-dev libboost-log1.71-dev libboost-math1.71-dev libboost-mpi1.71-dev libboost-mpi-python1.71-dev libboost-numpy1.71-dev libboost-program-options1.71-dev libboost-python1.71-dev libboost-random1.71-dev libboost-regex1.71-dev libboost-serialization1.71-dev libboost-stacktrace1.71-dev libboost-system1.71-dev libboost-test1.71-dev libboost-thread1.71-dev libboost-timer1.71-dev libboost-type-erasure1.71-dev libboost-wave1.71-dev libboost1.71-tools-dev libmpfrc++-dev libntl-dev krb5-doc krb5-user icu-doc libjs-jquery-ui-docs liblzma-doc ncurses-doc readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk m4-doc apparmor less www-browser nodejs libmail-box-perl python3-doc python3-tk python3-venv python3.8-venv python3.8-doc binfmt-support elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo r-cran-gee r-cran-expm clustalw muscle phyml t-coffee r-cran-covr r-cran-rpart r-cran-knitr r-cran-rmarkdown r-cran-prettycode r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-jpeg r-cran-viridis r-cran-cairo r-cran-forcats r-cran-gridgraphics r-cran-magick r-cran-maps r-cran-venndiagram r-cran-bit64 r-cran-r.utils r-cran-xts libgdal-dev r-cran-dbi r-cran-dbplyr r-cran-lubridate r-cran-rmysql r-cran-rpostgresql r-cran-broom r-cran-readr r-cran-markdown r-cran-hmisc r-cran-maptools r-cran-multcomp r-cran-quantreg r-cran-sf r-cran-svglite r-cran-devtools r-cran-rsqlite r-bioc-affy r-bioc-biobase r-bioc-limma r-cran-xml2 r-bioc-graph r-cran-rgl r-cran-getopt r-cran-ggally r-cran-vdiffr r-cran-webshot r-cran-dendextend r-cran-irdisplay r-cran-doparallel r-cran-foreach r-cran-iterators r-cran-itertools r-cran-inline r-cran-tinytest r-cran-rcpparmadillo r-cran-roxygen2 r-cran-mockr r-cran-dichromat r-cran-v8 r-cran-usethis r-cran-zeallot r-cran-plm r-cran-runit Recommended packages: devscripts curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs javascript-common krb5-locales libpng-tools publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl r-recommended r-doc-html r-cran-cliapp r-cran-mockery r-cran-vdiffr r-cran-webutils r-cran-rsqlite r-cran-hms r-cran-bit64 libpcg-cpp-dev r-cran-rgenoud r-cran-sp r-cran-mapproj r-cran-markdown r-cran-sodium r-cran-gridgraphics r-cran-lubridate r-cran-rsclient r-cran-sf r-cran-maps r-cran-ggthemes r-cran-domc r-cran-abind r-cran-runit r-cran-rmarkdown r-cran-xml2 r-cran-knitr r-cran-mockr r-cran-generics r-cran-dbi libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome fonts-glewlwyd fonts-glyphicons-halflings gettext gettext-base gfortran gfortran-9 groff-base icu-devtools intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libboost-dev libboost1.71-dev libbrotli1 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-9-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu-dev libicu66 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-microplugin.js libjs-sifter.js libjs-twitter-bootstrap-datepicker libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libmpdec2 libncurses-dev libncurses5-dev libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libuv1 libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db mime-support node-html5shiv node-normalize.css pkg-config po-debconf python3 python3-minimal python3.8 python3.8-minimal r-base-core r-base-dev r-cran-ape r-cran-askpass r-cran-assertthat r-cran-backports r-cran-base64enc r-cran-bh r-cran-bitops r-cran-callr r-cran-catools r-cran-cli r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-colourpicker r-cran-cowplot r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-data.table r-cran-desc r-cran-digest r-cran-dplyr r-cran-dqrng r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fitdistrplus r-cran-fnn r-cran-future r-cran-future.apply r-cran-gdata r-cran-ggplot2 r-cran-ggrepel r-cran-ggridges r-cran-globals r-cran-glue r-cran-gplots r-cran-gridextra r-cran-gtable r-cran-gtools r-cran-hexbin r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-ica r-cran-igraph r-cran-irlba r-cran-isoband r-cran-jsonlite r-cran-kernsmooth r-cran-labeling r-cran-later r-cran-lattice r-cran-lazyeval r-cran-leiden r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-lmtest r-cran-lsei r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mgcv r-cran-mime r-cran-miniui r-cran-munsell r-cran-nlme r-cran-npsurv r-cran-openssl r-cran-patchwork r-cran-pbapply r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plotly r-cran-plyr r-cran-png r-cran-praise r-cran-prettyunits r-cran-processx r-cran-promises r-cran-ps r-cran-purrr r-cran-r6 r-cran-rann r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppannoy r-cran-rcppeigen r-cran-rcppprogress r-cran-reshape2 r-cran-reticulate r-cran-rlang r-cran-rocr r-cran-rprojroot r-cran-rspectra r-cran-rstudioapi r-cran-rsvd r-cran-rtsne r-cran-scales r-cran-sctransform r-cran-shiny r-cran-shinyjs r-cran-sitmo r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tsne r-cran-utf8 r-cran-uwot r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xtable r-cran-yaml r-cran-zoo sbuild-build-depends-r-cran-seurat-dummy ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 300 newly installed, 0 to remove and 0 not upgraded. Need to get 177 MB of archives. After this operation, 546 MB of additional disk space will be used. Get:1 copy:/<>/resolver-YZwcVG/apt_archive ./ sbuild-build-depends-r-cran-seurat-dummy 0.invalid.0 [1088 B] Get:2 http://ftpmaster.internal/ubuntu groovy/main armhf libpython3.8-minimal armhf 3.8.2-1ubuntu1 [697 kB] Get:3 http://ftpmaster.internal/ubuntu groovy/main armhf libexpat1 armhf 2.2.9-1build1 [53.3 kB] Get:4 http://ftpmaster.internal/ubuntu groovy/main armhf python3.8-minimal armhf 3.8.2-1ubuntu1 [1581 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main armhf python3-minimal armhf 3.8.2-0ubuntu2 [23.6 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main armhf mime-support all 3.64ubuntu1 [30.6 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/main armhf libmpdec2 armhf 2.4.2-3 [66.8 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/main armhf libpython3.8-stdlib armhf 3.8.2-1ubuntu1 [1594 kB] Get:9 http://ftpmaster.internal/ubuntu groovy/main armhf python3.8 armhf 3.8.2-1ubuntu1 [364 kB] Get:10 http://ftpmaster.internal/ubuntu groovy/main armhf libpython3-stdlib armhf 3.8.2-0ubuntu2 [7068 B] Get:11 http://ftpmaster.internal/ubuntu groovy/main armhf python3 armhf 3.8.2-0ubuntu2 [47.6 kB] Get:12 http://ftpmaster.internal/ubuntu groovy/main armhf libbsd0 armhf 0.10.0-1 [49.8 kB] Get:13 http://ftpmaster.internal/ubuntu groovy/main armhf bsdmainutils armhf 11.1.2ubuntu3 [176 kB] Get:14 http://ftpmaster.internal/ubuntu groovy/main armhf libuchardet0 armhf 0.0.6-3build1 [62.4 kB] Get:15 http://ftpmaster.internal/ubuntu groovy/main armhf groff-base armhf 1.22.4-4build1 [759 kB] Get:16 http://ftpmaster.internal/ubuntu groovy/main armhf libpipeline1 armhf 1.5.2-2build1 [23.5 kB] Get:17 http://ftpmaster.internal/ubuntu groovy/main armhf man-db armhf 2.9.1-1 [1077 kB] Get:18 http://ftpmaster.internal/ubuntu groovy/universe armhf node-normalize.css all 8.0.1-3 [10.3 kB] Get:19 http://ftpmaster.internal/ubuntu groovy/main armhf libmagic-mgc armhf 1:5.38-4 [218 kB] Get:20 http://ftpmaster.internal/ubuntu groovy/main armhf libmagic1 armhf 1:5.38-4 [68.3 kB] Get:21 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libtool all 2.4.6-14 [161 kB] Get:52 http://ftpmaster.internal/ubuntu groovy/main armhf dh-autoreconf all 19 [16.1 kB] Get:53 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libdebhelper-perl all 13ubuntu1 [62.5 kB] Get:54 http://ftpmaster.internal/ubuntu groovy/main armhf libarchive-zip-perl all 1.68-1 [90.2 kB] Get:55 http://ftpmaster.internal/ubuntu groovy/main armhf libsub-override-perl all 0.09-2 [9532 B] Get:56 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libfile-stripnondeterminism-perl all 1.8.0-1 [16.2 kB] Get:57 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf dh-strip-nondeterminism all 1.8.0-1 [5228 B] Get:58 http://ftpmaster.internal/ubuntu groovy/main armhf dwz armhf 0.13-5 [153 kB] Get:59 http://ftpmaster.internal/ubuntu groovy/main armhf libcroco3 armhf 0.6.13-1 [70.5 kB] Get:60 http://ftpmaster.internal/ubuntu groovy/main armhf gettext armhf 0.19.8.1-10build1 [835 kB] Get:61 http://ftpmaster.internal/ubuntu groovy/main armhf intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:62 http://ftpmaster.internal/ubuntu groovy/main armhf po-debconf all 1.0.21 [233 kB] Get:63 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf debhelper all 13ubuntu1 [877 kB] Get:64 http://ftpmaster.internal/ubuntu groovy/main armhf zip armhf 3.0-11build1 [145 kB] Get:65 http://ftpmaster.internal/ubuntu groovy/main armhf unzip armhf 6.0-25ubuntu1 [155 kB] Get:66 http://ftpmaster.internal/ubuntu groovy/main armhf libpaper1 armhf 1.1.28 [12.1 kB] Get:67 http://ftpmaster.internal/ubuntu groovy/main armhf libpaper-utils armhf 1.1.28 [7960 B] Get:68 http://ftpmaster.internal/ubuntu groovy/main armhf xdg-utils all 1.1.3-2ubuntu1 [61.6 kB] Get:69 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libblas3 armhf 3.9.0-2 [102 kB] Get:70 http://ftpmaster.internal/ubuntu groovy/main armhf libfreetype6 armhf 2.10.1-2 [283 kB] Get:71 http://ftpmaster.internal/ubuntu groovy/main armhf fonts-dejavu-core all 2.37-1 [1041 kB] Get:72 http://ftpmaster.internal/ubuntu groovy/main armhf fontconfig-config all 2.13.1-2ubuntu3 [28.8 kB] Get:73 http://ftpmaster.internal/ubuntu groovy/main armhf libfontconfig1 armhf 2.13.1-2ubuntu3 [96.1 kB] Get:74 http://ftpmaster.internal/ubuntu groovy/main armhf libpixman-1-0 armhf 0.38.4-0ubuntu1 [159 kB] Get:75 http://ftpmaster.internal/ubuntu groovy/main armhf libxcb-render0 armhf 1.14-2 [14.2 kB] Get:76 http://ftpmaster.internal/ubuntu groovy/main armhf libxcb-shm0 armhf 1.14-2 [5540 B] Get:77 http://ftpmaster.internal/ubuntu groovy/main armhf libxrender1 armhf 1:0.9.10-1 [15.6 kB] Get:78 http://ftpmaster.internal/ubuntu groovy/main armhf libcairo2 armhf 1.16.0-4ubuntu1 [503 kB] Get:79 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libbrotli1 armhf 1.0.7-6.1 [269 kB] Get:80 http://ftpmaster.internal/ubuntu groovy/main armhf libroken18-heimdal armhf 7.7.0+dfsg-1ubuntu1 [34.6 kB] Get:81 http://ftpmaster.internal/ubuntu groovy/main armhf libasn1-8-heimdal armhf 7.7.0+dfsg-1ubuntu1 [140 kB] Get:82 http://ftpmaster.internal/ubuntu groovy/main armhf libheimbase1-heimdal armhf 7.7.0+dfsg-1ubuntu1 [24.4 kB] Get:83 http://ftpmaster.internal/ubuntu groovy/main armhf libhcrypto4-heimdal armhf 7.7.0+dfsg-1ubuntu1 [78.5 kB] Get:84 http://ftpmaster.internal/ubuntu groovy/main armhf libwind0-heimdal armhf 7.7.0+dfsg-1ubuntu1 [47.1 kB] Get:85 http://ftpmaster.internal/ubuntu groovy/main armhf libhx509-5-heimdal armhf 7.7.0+dfsg-1ubuntu1 [89.0 kB] Get:86 http://ftpmaster.internal/ubuntu groovy/main armhf libkrb5-26-heimdal armhf 7.7.0+dfsg-1ubuntu1 [170 kB] Get:87 http://ftpmaster.internal/ubuntu groovy/main armhf libheimntlm0-heimdal armhf 7.7.0+dfsg-1ubuntu1 [13.2 kB] Get:88 http://ftpmaster.internal/ubuntu groovy/main armhf libgssapi3-heimdal armhf 7.7.0+dfsg-1ubuntu1 [79.9 kB] Get:89 http://ftpmaster.internal/ubuntu groovy/main armhf libsasl2-modules-db armhf 2.1.27+dfsg-2 [13.4 kB] Get:90 http://ftpmaster.internal/ubuntu groovy/main armhf libsasl2-2 armhf 2.1.27+dfsg-2 [42.7 kB] Get:91 http://ftpmaster.internal/ubuntu groovy/main armhf libldap-common all 2.4.49+dfsg-2ubuntu1 [17.3 kB] Get:92 http://ftpmaster.internal/ubuntu groovy/main armhf libldap-2.4-2 armhf 2.4.49+dfsg-2ubuntu1 [134 kB] Get:93 http://ftpmaster.internal/ubuntu groovy/main armhf libnghttp2-14 armhf 1.40.0-1build1 [67.8 kB] Get:94 http://ftpmaster.internal/ubuntu groovy/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2build1 [49.1 kB] Get:95 http://ftpmaster.internal/ubuntu groovy/main armhf libssh-4 armhf 0.9.3-2ubuntu2 [147 kB] Get:96 http://ftpmaster.internal/ubuntu groovy/main armhf libcurl4 armhf 7.68.0-1ubuntu2 [202 kB] Get:97 http://ftpmaster.internal/ubuntu groovy/main armhf libjpeg-turbo8 armhf 2.0.3-0ubuntu1 [90.4 kB] Get:98 http://ftpmaster.internal/ubuntu groovy/main armhf libjpeg8 armhf 8c-2ubuntu8 [2202 B] Get:99 http://ftpmaster.internal/ubuntu groovy/main armhf libgfortran5 armhf 10-20200425-1ubuntu2 [251 kB] Get:100 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf liblapack3 armhf 3.9.0-2 [1734 kB] Get:101 http://ftpmaster.internal/ubuntu groovy/main armhf fontconfig armhf 2.13.1-2ubuntu3 [170 kB] Get:102 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libgraphite2-3 armhf 1.3.14-1 [62.7 kB] Get:103 http://ftpmaster.internal/ubuntu groovy/main armhf libharfbuzz0b armhf 2.6.4-1ubuntu4 [347 kB] Get:104 http://ftpmaster.internal/ubuntu groovy/main armhf libthai-data all 0.1.28-3 [134 kB] Get:105 http://ftpmaster.internal/ubuntu groovy/main armhf libdatrie1 armhf 0.2.12-3 [15.2 kB] Get:106 http://ftpmaster.internal/ubuntu groovy/main armhf libthai0 armhf 0.1.28-3 [14.7 kB] Get:107 http://ftpmaster.internal/ubuntu groovy/main armhf libpango-1.0-0 armhf 1.44.7-2ubuntu4 [144 kB] Get:108 http://ftpmaster.internal/ubuntu groovy/main armhf libpangoft2-1.0-0 armhf 1.44.7-2ubuntu4 [28.6 kB] Get:109 http://ftpmaster.internal/ubuntu groovy/main armhf libpangocairo-1.0-0 armhf 1.44.7-2ubuntu4 [20.7 kB] Get:110 http://ftpmaster.internal/ubuntu groovy/main armhf libtcl8.6 armhf 8.6.10+dfsg-1 [798 kB] Get:111 http://ftpmaster.internal/ubuntu groovy/main armhf libjbig0 armhf 2.1-3.1build1 [23.9 kB] Get:112 http://ftpmaster.internal/ubuntu groovy/main armhf libwebp6 armhf 0.6.1-2 [152 kB] Get:113 http://ftpmaster.internal/ubuntu groovy/main armhf libtiff5 armhf 4.1.0+git191117-2build1 [143 kB] Get:114 http://ftpmaster.internal/ubuntu groovy/main armhf libxft2 armhf 2.3.3-0ubuntu1 [32.5 kB] Get:115 http://ftpmaster.internal/ubuntu groovy/main armhf x11-common all 1:7.7+19ubuntu14 [22.3 kB] Get:116 http://ftpmaster.internal/ubuntu groovy/main armhf libxss1 armhf 1:1.2.3-1 [7512 B] Get:117 http://ftpmaster.internal/ubuntu groovy/main armhf libtk8.6 armhf 8.6.10-1 [630 kB] Get:118 http://ftpmaster.internal/ubuntu groovy/main armhf libice6 armhf 2:1.0.10-0ubuntu1 [34.1 kB] Get:119 http://ftpmaster.internal/ubuntu groovy/main armhf libsm6 armhf 2:1.2.3-1 [14.1 kB] Get:120 http://ftpmaster.internal/ubuntu groovy/main armhf libxt6 armhf 1:1.1.5-1 [129 kB] Get:121 http://ftpmaster.internal/ubuntu groovy/universe armhf r-base-core armhf 3.6.3-2 [24.2 MB] Get:122 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libgfortran-9-dev armhf 9.3.0-11ubuntu2 [306 kB] Get:123 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf gfortran-9 armhf 9.3.0-11ubuntu2 [6257 kB] Get:124 http://ftpmaster.internal/ubuntu groovy/main armhf gfortran armhf 4:9.3.0-1ubuntu2 [1372 B] Get:125 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libblas-dev armhf 3.9.0-2 [109 kB] Get:126 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf liblapack-dev armhf 3.9.0-2 [1813 kB] Get:127 http://ftpmaster.internal/ubuntu groovy/main armhf libncurses-dev armhf 6.2-1 [301 kB] Get:128 http://ftpmaster.internal/ubuntu groovy/main armhf libncurses5-dev armhf 6.2-1 [976 B] Get:129 http://ftpmaster.internal/ubuntu groovy/main armhf libreadline-dev armhf 8.0-4 [128 kB] Get:130 http://ftpmaster.internal/ubuntu groovy/main armhf libjpeg-turbo8-dev armhf 2.0.3-0ubuntu1 [203 kB] Get:131 http://ftpmaster.internal/ubuntu groovy/main armhf libjpeg8-dev armhf 8c-2ubuntu8 [1554 B] Get:132 http://ftpmaster.internal/ubuntu groovy/main armhf libjpeg-dev armhf 8c-2ubuntu8 [1554 B] Get:133 http://ftpmaster.internal/ubuntu groovy/main armhf libpcre2-16-0 armhf 10.34-7 [156 kB] Get:134 http://ftpmaster.internal/ubuntu groovy/main armhf libpcre2-32-0 armhf 10.34-7 [146 kB] Get:135 http://ftpmaster.internal/ubuntu groovy/main armhf libpcre2-posix2 armhf 10.34-7 [5348 B] Get:136 http://ftpmaster.internal/ubuntu groovy/main armhf libpcre2-dev armhf 10.34-7 [596 kB] Get:137 http://ftpmaster.internal/ubuntu groovy/main armhf libpcre16-3 armhf 2:8.39-12build1 [128 kB] Get:138 http://ftpmaster.internal/ubuntu groovy/main armhf libpcre32-3 armhf 2:8.39-12build1 [121 kB] Get:139 http://ftpmaster.internal/ubuntu groovy/main armhf libpcrecpp0v5 armhf 2:8.39-12build1 [13.2 kB] Get:140 http://ftpmaster.internal/ubuntu groovy/main armhf libpcre3-dev armhf 2:8.39-12build1 [476 kB] Get:141 http://ftpmaster.internal/ubuntu groovy/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2ubuntu1 [150 kB] Get:142 http://ftpmaster.internal/ubuntu groovy/main armhf libpng-dev armhf 1.6.37-2 [160 kB] Get:143 http://ftpmaster.internal/ubuntu groovy/main armhf libbz2-dev armhf 1.0.8-2 [29.3 kB] Get:144 http://ftpmaster.internal/ubuntu groovy/main armhf liblzma-dev armhf 5.2.4-1 [139 kB] Get:145 http://ftpmaster.internal/ubuntu groovy/main armhf icu-devtools armhf 66.1-2ubuntu2 [167 kB] Get:146 http://ftpmaster.internal/ubuntu groovy/main armhf libicu-dev armhf 66.1-2ubuntu2 [9208 kB] Get:147 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf pkg-config armhf 0.29.2-1ubuntu1 [43.4 kB] Get:148 http://ftpmaster.internal/ubuntu groovy/universe armhf r-base-dev all 3.6.3-2 [4524 B] Get:149 http://ftpmaster.internal/ubuntu groovy/main armhf libfile-which-perl all 1.23-1 [13.8 kB] Get:150 http://ftpmaster.internal/ubuntu groovy/universe armhf libswitch-perl all 2.17-2 [18.8 kB] Get:151 http://ftpmaster.internal/ubuntu groovy/universe armhf dh-r all 20200314 [35.5 kB] Get:152 http://ftpmaster.internal/ubuntu groovy/main armhf fonts-font-awesome all 5.0.10+really4.7.0~dfsg-1 [514 kB] Get:153 http://ftpmaster.internal/ubuntu groovy/universe armhf fonts-glewlwyd all 1.4.9-3 [401 kB] Get:154 http://ftpmaster.internal/ubuntu groovy/universe armhf fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-1 [117 kB] Get:155 http://ftpmaster.internal/ubuntu groovy/main armhf libboost1.71-dev armhf 1.71.0-6ubuntu6 [9068 kB] Get:156 http://ftpmaster.internal/ubuntu groovy/main armhf libboost-dev armhf 1.71.0.0ubuntu2 [3596 B] Get:157 http://ftpmaster.internal/ubuntu groovy/universe armhf libjs-bootstrap all 3.4.1+dfsg-1 [124 kB] Get:158 http://ftpmaster.internal/ubuntu groovy/universe armhf libjs-d3 all 3.5.17-2 [131 kB] Get:159 http://ftpmaster.internal/ubuntu groovy/universe armhf libjs-es5-shim all 4.5.14-1 [35.8 kB] Get:160 http://ftpmaster.internal/ubuntu groovy/universe armhf libjs-highlight.js all 9.12.0+dfsg1-5 [277 kB] Get:161 http://ftpmaster.internal/ubuntu groovy/main armhf libjs-jquery all 3.3.1~dfsg-3 [329 kB] Get:162 http://ftpmaster.internal/ubuntu groovy/universe armhf libjs-jquery-datatables all 1.10.20+dfsg-1 [136 kB] Get:163 http://ftpmaster.internal/ubuntu groovy/universe armhf libjs-sifter.js all 0.6.0+dfsg-1 [12.2 kB] Get:164 http://ftpmaster.internal/ubuntu groovy/universe armhf libjs-microplugin.js all 0.0.3+dfsg-1 [3466 B] Get:165 http://ftpmaster.internal/ubuntu groovy/universe armhf libjs-jquery-selectize.js all 0.12.6+dfsg-1 [50.8 kB] Get:166 http://ftpmaster.internal/ubuntu groovy/universe armhf libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB] Get:167 http://ftpmaster.internal/ubuntu groovy/universe armhf libjs-json all 0~20190826-1 [18.7 kB] Get:168 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-littler armhf 0.3.9-1 [297 kB] Get:169 http://ftpmaster.internal/ubuntu groovy/universe armhf littler all 0.3.9-1 [2420 B] Get:170 http://ftpmaster.internal/ubuntu groovy/universe armhf node-html5shiv all 3.7.3+dfsg-3 [12.9 kB] Get:171 http://ftpmaster.internal/ubuntu groovy-proposed/universe armhf r-cran-lattice armhf 0.20-41-1 [1122 kB] Get:172 http://ftpmaster.internal/ubuntu groovy-proposed/universe armhf r-cran-nlme armhf 3.1.147-1 [2196 kB] Get:173 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-pkgkitten all 0.1.5-1 [22.6 kB] Get:174 http://ftpmaster.internal/ubuntu groovy-proposed/universe armhf r-cran-rcpp armhf 1.0.4.6-1 [1845 kB] Get:175 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-ape armhf 5.3-1build1 [2165 kB] Get:176 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-sys armhf 3.3-1 [42.3 kB] Get:177 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-askpass armhf 1.1-1 [21.7 kB] Get:178 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-assertthat all 0.2.1-1 [56.7 kB] Get:179 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-backports armhf 1.1.6-1 [66.9 kB] Get:180 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-base64enc armhf 0.1-3-2 [27.0 kB] Get:181 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-bh all 1.66.0-1 [5116 B] Get:182 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-bitops armhf 1.0-6-4 [23.3 kB] Get:183 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-ps armhf 1.3.2-2 [211 kB] Get:184 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-r6 all 2.4.1-1 [79.4 kB] Get:185 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-processx armhf 3.4.2-1 [265 kB] Get:186 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-callr all 3.4.3-1 [387 kB] Get:187 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-catools armhf 1.18.0-1build1 [198 kB] Get:188 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-crayon all 1.3.4-4ubuntu1 [499 kB] Get:189 http://ftpmaster.internal/ubuntu groovy-proposed/universe armhf r-cran-glue armhf 1.4.0-1 [136 kB] Get:190 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-fansi armhf 0.4.1-1 [336 kB] Get:191 http://ftpmaster.internal/ubuntu groovy-proposed/universe armhf r-cran-cli all 2.0.2-1 [393 kB] Get:192 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-cluster armhf 2.1.0-2 [519 kB] Get:193 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-codetools all 0.2-16-1 [89.3 kB] Get:194 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-colorspace armhf 1.4-1+dfsg-1 [1434 kB] Get:195 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-digest armhf 0.6.25-1 [168 kB] Get:196 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-gtable all 0.3.0+dfsg-1 [138 kB] Get:197 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-rlang armhf 0.4.4-1 [1107 kB] Get:198 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-ellipsis armhf 0.3.0-1 [30.1 kB] Get:199 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-evaluate all 0.14-1 [81.0 kB] Get:200 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-magrittr all 1.5-5 [152 kB] Get:201 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-rprojroot all 1.3-2-2 [97.0 kB] Get:202 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-desc all 1.2.0-2 [289 kB] Get:203 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-prettyunits all 1.1.1-1 [39.6 kB] Get:204 http://ftpmaster.internal/ubuntu groovy-proposed/universe armhf r-cran-withr all 2.2.0-1 [198 kB] Get:205 http://ftpmaster.internal/ubuntu groovy-proposed/universe armhf r-cran-pkgbuild all 1.0.6-2 [141 kB] Get:206 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-rstudioapi all 0.11-1 [245 kB] Get:207 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-pkgload armhf 1.0.2-1 [159 kB] Get:208 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-praise all 1.0.0-3 [19.8 kB] Get:209 http://ftpmaster.internal/ubuntu groovy-proposed/universe armhf r-cran-testthat armhf 2.3.2-1 [1065 kB] Get:210 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-isoband armhf 0.2.1-1 [2149 kB] Get:211 http://ftpmaster.internal/ubuntu groovy-proposed/universe armhf r-cran-mass armhf 7.3-51.6-1 [1112 kB] Get:212 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-matrix armhf 1.2-18-1 [3413 kB] Get:213 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-mgcv armhf 1.8-31-1 [2695 kB] Get:214 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-farver armhf 2.0.3-1build1 [1328 kB] Get:215 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-labeling all 0.3-3 [61.5 kB] Get:216 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-munsell all 0.5.0-1 [206 kB] Get:217 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-rcolorbrewer all 1.1-2-2 [54.4 kB] Get:218 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-viridislite all 0.3.0-3 [58.9 kB] Get:219 http://ftpmaster.internal/ubuntu groovy-proposed/universe armhf r-cran-lifecycle all 0.2.0-1 [93.1 kB] Get:220 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-scales all 1.1.0-1 [482 kB] Get:221 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-utf8 armhf 1.1.4-1build1 [126 kB] Get:222 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-vctrs armhf 0.2.3-1 [811 kB] Get:223 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-pillar all 1.4.3-1 [227 kB] Get:224 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-pkgconfig all 2.0.3-1 [19.7 kB] Get:225 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-tibble armhf 2.1.3-2 [324 kB] Get:226 http://ftpmaster.internal/ubuntu groovy-proposed/universe armhf r-cran-ggplot2 all 3.3.0+dfsg-1 [3070 kB] Get:227 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-htmltools armhf 0.4.0-1build1 [197 kB] Get:228 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-jsonlite armhf 1.6.1+dfsg-1 [437 kB] Get:229 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-yaml armhf 2.2.1-1 [91.3 kB] Get:230 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-htmlwidgets all 1.5.1+dfsg-1 [115 kB] Get:231 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-later armhf 1.0.0+dfsg-2build1 [98.0 kB] Get:232 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-promises armhf 1.1.0-1build1 [1201 kB] Get:233 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-httpuv armhf 1.5.2+dfsg-1build1 [457 kB] Get:234 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-mime armhf 0.9-1 [35.2 kB] Get:235 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-xtable all 1:1.8-4-1 [690 kB] Get:236 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-sourcetools armhf 0.1.7-2build1 [44.1 kB] Get:237 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-fastmap armhf 1.0.1-2build1 [41.5 kB] Get:238 http://ftpmaster.internal/ubuntu groovy/universe armhf libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4 [28.4 kB] Get:239 http://ftpmaster.internal/ubuntu groovy-proposed/universe armhf r-cran-shiny all 1.4.0.2+dfsg-1 [3178 kB] Get:240 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-miniui all 0.1.1.1-2 [35.5 kB] Get:241 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-shinyjs all 1.1-1 [894 kB] Get:242 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-colourpicker all 1.0+dfsg-2 [1666 kB] Get:243 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-cowplot all 1.0.0+dfsg-2 [568 kB] Get:244 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-lazyeval armhf 0.2.2-1 [142 kB] Get:245 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kB] Get:283 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-pbapply all 1.4-2-1 [71.0 kB] Get:284 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-stringi armhf 1.4.6-1build1 [689 kB] Get:285 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-tidyr armhf 1.0.2-1build1 [713 kB] Get:286 http://ftpmaster.internal/ubuntu groovy-proposed/universe armhf r-cran-plotly all 4.9.2.1+dfsg-1 [3180 kB] Get:287 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-png armhf 0.1-7-3 [38.3 kB] Get:288 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-rann armhf 2.6.1-1build1 [38.2 kB] Get:289 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-rcppannoy armhf 0.0.14-1build1 [343 kB] Get:290 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-rcppeigen armhf 0.3.3.7.0-1build1 [1330 kB] Get:291 http://ftpmaster.internal/ubuntu groovy/universe armhf r-cran-rcppprogress all 0.4.2-1 [21.8 kB] Get:292 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installed Fetched 177 MB in 10s (17.4 MB/s) Selecting previously unselected package libpython3.8-minimal:armhf. 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Setting up r-cran-shinyjs (1.1-1) ... Setting up r-cran-tidyselect (1.0.0+dfsg-1) ... Setting up r-cran-testthat (2.3.2-1) ... Setting up r-cran-miniui (0.1.1.1-2) ... Setting up r-cran-isoband (0.2.1-1) ... Setting up r-cran-dplyr (0.8.5-1) ... Setting up r-cran-ggplot2 (3.3.0+dfsg-1) ... Setting up r-cran-colourpicker (1.0+dfsg-2) ... Setting up r-cran-ggrepel (0.8.2-1) ... Setting up r-cran-tidyr (1.0.2-1build1) ... Setting up r-cran-ggridges (0.5.2-1) ... Setting up r-cran-cowplot (1.0.0+dfsg-2) ... Setting up r-cran-sctransform (0.2.1-1build1) ... Setting up r-cran-patchwork (1.0.0-2) ... Setting up r-cran-plotly (4.9.2.1+dfsg-1) ... Setting up dh-autoreconf (19) ... Setting up debhelper (13ubuntu1) ... Setting up dh-r (20200314) ... Setting up sbuild-build-depends-r-cran-seurat-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.31-0ubuntu9) ... 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r-cran-reticulate_1.14+dfsg-1build1 r-cran-rlang_0.4.4-1 r-cran-rocr_1.0-7-4 r-cran-rprojroot_1.3-2-2 r-cran-rspectra_0.16-0-1build1 r-cran-rstudioapi_0.11-1 r-cran-rsvd_1.0.3-2 r-cran-rtsne_0.15-2 r-cran-scales_1.1.0-1 r-cran-sctransform_0.2.1-1build1 r-cran-shiny_1.4.0.2+dfsg-1 r-cran-shinyjs_1.1-1 r-cran-sitmo_2.0.1-2build1 r-cran-sourcetools_0.1.7-2build1 r-cran-stringi_1.4.6-1build1 r-cran-stringr_1.4.0-1 r-cran-survival_3.1-12-1 r-cran-sys_3.3-1 r-cran-testthat_2.3.2-1 r-cran-tibble_2.1.3-2 r-cran-tidyr_1.0.2-1build1 r-cran-tidyselect_1.0.0+dfsg-1 r-cran-tsne_0.1-3-2 r-cran-utf8_1.1.4-1build1 r-cran-uwot_0.1.8-1 r-cran-vctrs_0.2.3-1 r-cran-viridislite_0.3.0-3 r-cran-withr_2.2.0-1 r-cran-xtable_1:1.8-4-1 r-cran-yaml_2.2.1-1 r-cran-zoo_1.8-7-2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-cran-seurat-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 systemd_245.5-1ubuntu1 systemd-sysv_245.5-1ubuntu1 systemd-timesyncd_245.5-1ubuntu1 sysvinit-utils_2.96-2.1ubuntu1 tar_1.30+dfsg-7 tzdata_2019c-3ubuntu1 ubuntu-keyring_2020.02.11.2 ucf_3.0038+nmu1 unzip_6.0-25ubuntu1 util-linux_2.34-0.1ubuntu9 x11-common_1:7.7+19ubuntu14 xauth_1:1.1-0ubuntu1 xdg-utils_1.1.3-2ubuntu1 xz-utils_5.2.4-1 zip_3.0-11build1 zlib1g_1:1.2.11.dfsg-2ubuntu1 zlib1g-dev_1:1.2.11.dfsg-2ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sun Apr 19 10:16:53 2020 UTC gpgv: using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-cran-seurat_3.1.5-1.dsc dpkg-source: info: extracting r-cran-seurat in r-cran-seurat-3.1.5 dpkg-source: info: unpacking r-cran-seurat_3.1.5.orig.tar.gz dpkg-source: info: unpacking r-cran-seurat_3.1.5-1.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-19218078 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-19218078 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-19218078 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package r-cran-seurat dpkg-buildpackage: info: source version 3.1.5-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary-arch dh binary-arch --buildsystem R dh_update_autotools_config -a -O--buildsystem=R dh_autoreconf -a -O--buildsystem=R dh_auto_configure -a -O--buildsystem=R dh_auto_build -a -O--buildsystem=R dh_auto_test -a -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=R dh_prep -a -O--buildsystem=R dh_auto_install -a -O--buildsystem=R I: R packages needed for DEP8: testthat I: R Package: Seurat Version: 3.1.5 I: Building using R version 3.6.3-2 I: R API version: r-api-3.5 I: Using built-time from d/changelog: Sun, 19 Apr 2020 11:52:45 +0200 mkdir -p /<>/debian/r-cran-seurat/usr/lib/R/site-library R CMD INSTALL -l /<>/debian/r-cran-seurat/usr/lib/R/site-library --clean . "--built-timestamp='Sun, 19 Apr 2020 11:52:45 +0200'" * installing *source* package ‘Seurat’ ... ** package ‘Seurat’ successfully unpacked and MD5 sums checked ** using staged installation ** libs make[1]: Entering directory '/<>/src' g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/RcppProgress/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-r74U5b/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ModularityOptimizer.cpp -o ModularityOptimizer.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/RcppProgress/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-r74U5b/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RModularityOptimizer.cpp -o RModularityOptimizer.o In file included from /usr/include/c++/9/vector:72, from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59, from /usr/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:26, from /usr/lib/R/site-library/RcppEigen/include/RcppEigen.h:25, from RModularityOptimizer.cpp:9: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In function ‘Rcpp::IntegerVector RunModularityClusteringCpp(Eigen::SparseMatrix, int, double, int, int, int, int, bool, std::string)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/RcppProgress/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-r74U5b/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/RcppProgress/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-r74U5b/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c data_manipulation.cpp -o data_manipulation.o In file included from /usr/include/c++/9/vector:72, from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59, from /usr/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:26, from /usr/lib/R/site-library/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Eigen::Triplet}; _Tp = Eigen::Triplet; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Eigen::Triplet}; _Tp = Eigen::Triplet; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/RcppProgress/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-r74U5b/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c integration.cpp -o integration.o In file included from /usr/include/c++/9/vector:72, from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59, from /usr/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:26, from /usr/lib/R/site-library/RcppEigen/include/RcppEigen.h:25, from integration.cpp:1: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Eigen::Triplet}; _Tp = Eigen::Triplet; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In function ‘Eigen::SparseMatrix FindWeightsC(Eigen::SparseMatrix, Rcpp::NumericVector, Eigen::MatrixXd, std::vector >, std::vector >, Eigen::MatrixXd, Eigen::VectorXd, double, double, bool)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/RcppProgress/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-r74U5b/r-base-3.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c snn.cpp -o snn.o In file included from /usr/include/c++/9/vector:72, from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59, from /usr/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:26, from /usr/lib/R/site-library/RcppEigen/include/RcppEigen.h:25, from snn.cpp:1: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Eigen::Triplet}; _Tp = Eigen::Triplet; _Alloc = std::allocator >]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In function ‘Eigen::SparseMatrix ComputeSNN(Eigen::MatrixXd, double)’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o Seurat.so ModularityOptimizer.o RModularityOptimizer.o RcppExports.o data_manipulation.o integration.o snn.o -L/usr/lib/R/lib -lR make[1]: Leaving directory '/<>/src' make[1]: Entering directory '/<>/src' make[1]: Leaving directory '/<>/src' installing to /<>/debian/r-cran-seurat/usr/lib/R/site-library/00LOCK-r-cran-seurat-3.1.5/00new/Seurat/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Seurat) rm -f /<>/debian/r-cran-seurat/usr/lib/R/site-library/Seurat/LICENSE W: Ignoring specified R dependency: R (>= 3.4.0) I: Using r-cran-testthat for Recommends:testthat W: Cannot find a debian package for Suggests:loomR I: Using r-cran-sdmtools for Suggests:SDMTools W: Cannot find a debian package for Suggests:hdf5r I: Using r-bioc-s4vectors for Suggests:S4Vectors I: Using r-bioc-summarizedexperiment for Suggests:SummarizedExperiment W: Cannot find a debian package for Suggests:SingleCellExperiment W: Cannot find a debian package for Suggests:MAST I: Using r-bioc-deseq2 for Suggests:DESeq2 I: Using r-bioc-biocgenerics for Suggests:BiocGenerics I: Using r-bioc-genomicranges for Suggests:GenomicRanges I: Using r-bioc-genomeinfodb for Suggests:GenomeInfoDb I: Using r-bioc-iranges for Suggests:IRanges I: Using r-bioc-rtracklayer for Suggests:rtracklayer W: Cannot find a debian package for Suggests:monocle I: Using r-bioc-biobase for Suggests:Biobase I: Using r-cran-vgam for Suggests:VGAM I: Using r-bioc-limma for Suggests:limma I: Using r-cran-metap for Suggests:metap I: Using r-cran-ape for Imports:ape I: Using r-cran-cluster for Imports:cluster I: Using r-cran-cowplot for Imports:cowplot I: Using r-cran-fitdistrplus for Imports:fitdistrplus I: Using r-cran-future for Imports:future I: Using r-cran-future.apply for Imports:future.apply I: Using r-cran-ggplot2 for Imports:ggplot2 (>= 3.0.0) I: Using r-cran-ggrepel for Imports:ggrepel I: Using r-cran-ggridges for Imports:ggridges I: Using r-cran-httr for Imports:httr I: Using r-cran-ica for Imports:ica I: Using r-cran-igraph for Imports:igraph I: Using r-cran-irlba for Imports:irlba I: Using r-cran-kernsmooth for Imports:KernSmooth I: Using r-cran-leiden for Imports:leiden (>= 0.3.1) I: Using r-cran-lmtest for Imports:lmtest I: Using r-cran-mass for Imports:MASS I: Using r-cran-matrix for Imports:Matrix (>= 1.2-14) I: Using r-cran-patchwork for Imports:patchwork I: Using r-cran-pbapply for Imports:pbapply I: Using r-cran-plotly for Imports:plotly I: Using r-cran-png for Imports:png I: Using r-cran-rann for Imports:RANN I: Using r-cran-rcolorbrewer for Imports:RColorBrewer I: Using r-cran-rcpp for Imports:Rcpp I: Using r-cran-rcppannoy for Imports:RcppAnnoy I: Using r-cran-reticulate for Imports:reticulate I: Using r-cran-rlang for Imports:rlang I: Using r-cran-rocr for Imports:ROCR I: Using r-cran-rsvd for Imports:rsvd I: Using r-cran-rtsne for Imports:Rtsne I: Using r-cran-scales for Imports:scales I: Using r-cran-sctransform for Imports:sctransform (>= 0.2.0) I: Using r-cran-tsne for Imports:tsne I: Using r-cran-uwot for Imports:uwot (>= 0.1.5) I: Using r-cran-rcpp for LinkingTo:Rcpp (>= 0.11.0) I: Using r-cran-rcppeigen for LinkingTo:RcppEigen I: Using r-cran-rcppprogress for LinkingTo:RcppProgress dh_installdocs -a -O--buildsystem=R dh_installchangelogs -a -O--buildsystem=R dh_installinit -a -O--buildsystem=R dh_installsystemduser -a -O--buildsystem=R dh_perl -a -O--buildsystem=R dh_link -a -O--buildsystem=R dh_strip_nondeterminism -a -O--buildsystem=R dh_compress -a -O--buildsystem=R dh_fixperms -a -O--buildsystem=R dh_missing -a -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -a -O--buildsystem=R dh_gencontrol -a -O--buildsystem=R dh_md5sums -a -O--buildsystem=R dh_builddeb -a -O--buildsystem=R INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing r-cran-seurat (in debian/r-cran-seurat); do_strip: , oemstrip: pkgstriptranslations: processing r-cran-seurat-dbgsym (in debian/.debhelper/r-cran-seurat/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-cran-seurat/DEBIAN/control, package r-cran-seurat, directory debian/r-cran-seurat pkgstripfiles: processing control file: debian/.debhelper/r-cran-seurat/dbgsym-root/DEBIAN/control, package r-cran-seurat-dbgsym, directory debian/.debhelper/r-cran-seurat/dbgsym-root dpkg-deb: building package 'r-cran-seurat-dbgsym' in 'debian/.debhelper/scratch-space/build-r-cran-seurat/r-cran-seurat-dbgsym_3.1.5-1_armhf.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-cran-seurat ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-cran-seurat' in '../r-cran-seurat_3.1.5-1_armhf.deb'. Renaming r-cran-seurat-dbgsym_3.1.5-1_armhf.deb to r-cran-seurat-dbgsym_3.1.5-1_armhf.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../r-cran-seurat_3.1.5-1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20200428-1437 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-cran-seurat_3.1.5-1_armhf.changes: ------------------------------------ Format: 1.8 Date: Sun, 19 Apr 2020 11:52:45 +0200 Source: r-cran-seurat Binary: r-cran-seurat Architecture: armhf Version: 3.1.5-1 Distribution: groovy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Dylan Aïssi Description: r-cran-seurat - Tools for Single Cell Genomics Changes: r-cran-seurat (3.1.5-1) unstable; urgency=medium . * Team upload. * New upstream version Checksums-Sha1: 233f7157b3c80e19f6de1a92050543104f81de47 2427796 r-cran-seurat-dbgsym_3.1.5-1_armhf.ddeb cf4f9f0b647edfd1e04b3c04115f1578a9b77e28 14017 r-cran-seurat_3.1.5-1_armhf.buildinfo d14649f42f1c6367d61f6afc91e1ddd68ad06390 1954144 r-cran-seurat_3.1.5-1_armhf.deb Checksums-Sha256: 78b6145d7e39681e05ff0fc5fad56ce52609b1a31a5649db07083acbdd000ef4 2427796 r-cran-seurat-dbgsym_3.1.5-1_armhf.ddeb e1f39c8b2ce64615f989628d3e422d8c3e2557c6c1388c7d7c2d78c37f584326 14017 r-cran-seurat_3.1.5-1_armhf.buildinfo 7a16979bdbd5c3e001199c885e12652ccc9afc4767cdfa8114f1ef7b35918dfb 1954144 r-cran-seurat_3.1.5-1_armhf.deb Files: e518e784dc3f4d8321ae481faa2c21b8 2427796 debug optional r-cran-seurat-dbgsym_3.1.5-1_armhf.ddeb 3a2856044de93e24097f279cfd42f658 14017 gnu-r optional r-cran-seurat_3.1.5-1_armhf.buildinfo 931331cdd627e8d1afcb83f324e6b8cb 1954144 gnu-r optional r-cran-seurat_3.1.5-1_armhf.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-cran-seurat_3.1.5-1_armhf.deb ------------------------------- new debian package, version 2.0. size 1954144 bytes: control archive=2556 bytes. 1894 bytes, 21 lines control 3986 bytes, 47 lines md5sums Package: r-cran-seurat Version: 3.1.5-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian R Packages Maintainers Installed-Size: 2245 Depends: r-base-core (>= 3.6.3-2), r-api-3.5, r-cran-ape, r-cran-cluster, r-cran-cowplot, r-cran-fitdistrplus, r-cran-future, r-cran-future.apply, r-cran-ggplot2 (>= 3.0.0), r-cran-ggrepel, r-cran-ggridges, r-cran-httr, r-cran-ica, r-cran-igraph, r-cran-irlba, r-cran-kernsmooth, r-cran-leiden (>= 0.3.1), r-cran-lmtest, r-cran-mass, r-cran-matrix (>= 1.2-14), r-cran-patchwork, r-cran-pbapply, r-cran-plotly, r-cran-png, r-cran-rann, r-cran-rcolorbrewer, r-cran-rcpp (>= 0.11.0), r-cran-rcppannoy, r-cran-reticulate, r-cran-rlang, r-cran-rocr, r-cran-rsvd, r-cran-rtsne, r-cran-scales, r-cran-sctransform (>= 0.2.0), r-cran-tsne, r-cran-uwot (>= 0.1.5), r-cran-rcppeigen, r-cran-rcppprogress, libc6 (>= 2.29), libgcc-s1 (>= 3.5), libstdc++6 (>= 5.2) Recommends: r-cran-testthat Suggests: r-cran-sdmtools, r-bioc-s4vectors, r-bioc-summarizedexperiment, r-bioc-deseq2, r-bioc-biocgenerics, r-bioc-genomicranges, r-bioc-genomeinfodb, r-bioc-iranges, r-bioc-rtracklayer, r-bioc-biobase, r-cran-vgam, r-bioc-limma, r-cran-metap Section: gnu-r Priority: optional Homepage: https://cran.r-project.org/package=Seurat Description: Tools for Single Cell Genomics A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. 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