https://launchpad.net/ubuntu/+source/r-cran-seurat/5.0.1-1/+build/27029617 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lcy02-amd64-069 5.4.0-167-generic #184-Ubuntu SMP Tue Oct 31 09:21:49 UTC 2023 x86_64 Buildd toolchain package versions: launchpad-buildd_235~645~ubuntu20.04.1 python3-lpbuildd_235~645~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 28 Nov 18:28:20 ntpdate[1881]: adjust time server 10.131.248.1 offset -0.000274 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-27029617 --image-type chroot /home/buildd/filecache-default/1fe94ca8758119221c8de2550665a1bb335bd6a9 Creating target for build PACKAGEBUILD-27029617 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-27029617 Starting target for build PACKAGEBUILD-27029617 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-27029617 'deb http://ftpmaster.internal/ubuntu noble main universe' 'deb http://ftpmaster.internal/ubuntu noble-security main universe' 'deb http://ftpmaster.internal/ubuntu noble-updates main universe' 'deb http://ftpmaster.internal/ubuntu noble-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-27029617 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-27029617 Updating target for build PACKAGEBUILD-27029617 Get:1 http://ftpmaster.internal/ubuntu noble InRelease [240 kB] Get:2 http://ftpmaster.internal/ubuntu noble-security InRelease [74.9 kB] Get:3 http://ftpmaster.internal/ubuntu noble-updates InRelease [74.9 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease [102 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 Packages [1407 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main Translation-en [517 kB] Get:7 http://ftpmaster.internal/ubuntu noble/universe amd64 Packages [15.2 MB] Get:8 http://ftpmaster.internal/ubuntu noble/universe Translation-en [6026 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [145 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main Translation-en [43.8 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [1292 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe Translation-en [356 kB] Fetched 25.5 MB in 3s (9925 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libunistring2 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: libunistring5 The following packages will be upgraded: apt apt-utils base-files base-passwd bash bash-completion binutils binutils-common binutils-x86-64-linux-gnu bsdextrautils bsdutils cpp cpp-13 debianutils diffutils dpkg dpkg-dev fakeroot g++ g++-13 gcc gcc-13 gcc-13-base grep krb5-locales libapparmor1 libapt-pkg6.0 libargon2-1 libasan8 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdpkg-perl libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgnutls30 libgomp1 libgpg-error-l10n libgpg-error0 libgprofng0 libgssapi-krb5-2 libhwasan0 libidn2-0 libitm1 libk5crypto3 libkrb5-3 libkrb5support0 liblsan0 liblzma5 libmount1 libncursesw6 libnsl-dev libnsl2 libpam-modules libpam-modules-bin libpam-runtime libpam0g libperl5.36 libpng16-16 libproc2-0 libquadmath0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1 libsmartcols1 libsqlite3-0 libssl3 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libtsan2 libubsan1 libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev lto-disabled-list mawk mount ncurses-base ncurses-bin openssl optipng perl perl-base perl-modules-5.36 pinentry-curses procps readline-common systemd systemd-dev systemd-sysv sysvinit-utils ubuntu-keyring util-linux uuid-runtime xz-utils zlib1g 123 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 107 MB of archives. After this operation, 2065 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.38-3ubuntu1 [2114 kB] Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.38-3ubuntu1 [20.3 kB] Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-common all 1.3.4+ds-1 [7920 B] Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1 [193 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 libgssapi-krb5-2 amd64 1.20.1-5build1 [142 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libkrb5-3 amd64 1.20.1-5build1 [346 kB] Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libk5crypto3 amd64 1.20.1-5build1 [81.3 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libkrb5support0 amd64 1.20.1-5build1 [33.2 kB] Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 libssl3 amd64 3.0.10-1ubuntu3 [1910 kB] Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc3 amd64 1.3.4+ds-1 [81.4 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl2 amd64 1.3.0-3 [41.3 kB] Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 linux-libc-dev amd64 6.6.0-13.13 [1568 kB] Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 13.2.0-7ubuntu1 [48.0 kB] Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-base amd64 13.2.0-7ubuntu1 [44.6 kB] Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-s1 amd64 13.2.0-7ubuntu1 [62.4 kB] Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 13.2.0-7ubuntu1 [142 kB] Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 13.2.0-7ubuntu1 [29.3 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 13.2.0-7ubuntu1 [10.4 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 13.2.0-7ubuntu1 [2838 kB] Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 13.2.0-7ubuntu1 [1203 kB] Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 13.2.0-7ubuntu1 [2607 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 13.2.0-7ubuntu1 [1105 kB] Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 13.2.0-7ubuntu1 [1262 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 13.2.0-7ubuntu1 [153 kB] Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-7ubuntu1 [12.1 MB] Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-7ubuntu1 [2355 kB] Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-7ubuntu1 [2687 kB] Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-7ubuntu1 [21.5 MB] Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-7ubuntu1 [10.7 MB] Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++6 amd64 13.2.0-7ubuntu1 [772 kB] Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 libzstd1 amd64 1.5.5+dfsg2-2 [297 kB] Get:33 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 zlib1g amd64 1:1.3.dfsg-3ubuntu1 [63.3 kB] Get:34 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libgprofng0 amd64 2.41-7ubuntu1 [847 kB] Get:35 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libctf0 amd64 2.41-7ubuntu1 [94.1 kB] Get:36 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libctf-nobfd0 amd64 2.41-7ubuntu1 [96.3 kB] Get:37 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libsframe1 amd64 2.41-7ubuntu1 [14.5 kB] Get:38 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libbinutils amd64 2.41-7ubuntu1 [564 kB] Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 binutils-common amd64 2.41-7ubuntu1 [247 kB] Get:40 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 binutils amd64 2.41-7ubuntu1 [18.0 kB] Get:41 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 binutils-x86-64-linux-gnu amd64 2.41-7ubuntu1 [2471 kB] Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 libc6 amd64 2.38-3ubuntu1 [3248 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 base-files amd64 13ubuntu5 [73.6 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 debianutils amd64 5.14 [89.0 kB] Get:45 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 bash amd64 5.2.21-2ubuntu1 [795 kB] Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 bsdutils amd64 1:2.39.2-6ubuntu1 [93.9 kB] Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 diffutils amd64 1:3.10-1 [176 kB] Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma5 amd64 5.4.5-0.1 [128 kB] Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 libapparmor1 amd64 4.0.0~alpha2-0ubuntu6 [47.6 kB] Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 libaudit-common all 1:3.1.1-1build1 [5510 B] Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 libcap-ng0 amd64 0.8.3-1build3 [15.3 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 libaudit1 amd64 1:3.1.1-1build1 [46.5 kB] Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libblkid1 amd64 2.39.2-6ubuntu1 [122 kB] Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libselinux1 amd64 3.5-1build2 [78.5 kB] Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libmount1 amd64 2.39.2-6ubuntu1 [132 kB] Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libpam0g amd64 1.5.2-9.1ubuntu1 [65.1 kB] Get:57 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libseccomp2 amd64 2.5.4-2ubuntu1 [49.3 kB] Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 systemd-sysv amd64 253.5-1ubuntu7 [11.5 kB] Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 systemd-dev all 253.5-1ubuntu7 [78.5 kB] Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 systemd amd64 253.5-1ubuntu7 [3060 kB] Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libsystemd-shared amd64 253.5-1ubuntu7 [1871 kB] Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libargon2-1 amd64 0~20190702+dfsg-4 [21.4 kB] Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libuuid1 amd64 2.39.2-6ubuntu1 [34.1 kB] Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libcryptsetup12 amd64 2:2.6.1-5ubuntu1 [242 kB] Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libfdisk1 amd64 2.39.2-6ubuntu1 [145 kB] Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 mount amd64 2.39.2-6ubuntu1 [118 kB] Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libsystemd0 amd64 253.5-1ubuntu7 [407 kB] Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libudev1 amd64 253.5-1ubuntu7 [159 kB] Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libxxhash0 amd64 0.8.2-2 [25.5 kB] Get:70 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libapt-pkg6.0 amd64 2.7.7 [945 kB] Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 dpkg amd64 1.22.1ubuntu3 [1385 kB] Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 grep amd64 3.11-3 [161 kB] Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 ncurses-bin amd64 6.4+20231121-1build1 [186 kB] Get:74 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libperl5.36 amd64 5.36.0-10ubuntu1 [4782 kB] Get:75 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 perl amd64 5.36.0-10ubuntu1 [235 kB] Get:76 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 perl-base amd64 5.36.0-10ubuntu1 [1770 kB] Get:77 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 perl-modules-5.36 all 5.36.0-10ubuntu1 [2984 kB] Get:78 http://ftpmaster.internal/ubuntu noble/main amd64 libdb5.3 amd64 5.3.28+dfsg2-4 [736 kB] Get:79 http://ftpmaster.internal/ubuntu noble/main amd64 util-linux amd64 2.39.2-6ubuntu1 [1120 kB] Get:80 http://ftpmaster.internal/ubuntu noble/main amd64 base-passwd amd64 3.6.2 [51.2 kB] Get:81 http://ftpmaster.internal/ubuntu noble/main amd64 libc-bin amd64 2.38-3ubuntu1 [680 kB] Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 ncurses-base all 6.4+20231121-1build1 [25.2 kB] Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 sysvinit-utils amd64 3.08-3ubuntu1 [33.7 kB] Get:84 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 apt amd64 2.7.7 [1376 kB] Get:85 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 apt-utils amd64 2.7.7 [216 kB] Get:86 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 ubuntu-keyring all 2023.11.28.1 [11.1 kB] Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 libunistring5 amd64 1.1-2 [537 kB] Get:88 http://ftpmaster.internal/ubuntu noble/main amd64 libidn2-0 amd64 2.3.4-1build1 [64.3 kB] Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 libgnutls30 amd64 3.8.1-4ubuntu6 [988 kB] Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 libpam-modules-bin amd64 1.5.2-9.1ubuntu1 [47.6 kB] Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 libpam-modules amd64 1.5.2-9.1ubuntu1 [284 kB] Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 libsmartcols1 amd64 2.39.2-6ubuntu1 [63.3 kB] Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 uuid-runtime amd64 2.39.2-6ubuntu1 [32.9 kB] Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 libgpg-error-l10n all 1.47-3 [7936 B] Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 libgpg-error0 amd64 1.47-3 [69.8 kB] Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 libpam-runtime all 1.5.2-9.1ubuntu1 [41.5 kB] Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 libsemanage-common all 3.5-1build1 [9982 B] Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libsepol2 amd64 3.5-2 [300 kB] Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libsemanage2 amd64 3.5-1build1 [92.9 kB] Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libncursesw6 amd64 6.4+20231121-1build1 [147 kB] Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libtinfo6 amd64 6.4+20231121-1build1 [107 kB] Get:102 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libffi8 amd64 3.4.4-2 [24.4 kB] Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libproc2-0 amd64 2:4.0.4-2ubuntu1 [59.0 kB] Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 mawk amd64 1.3.4.20231102-1 [126 kB] Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 procps amd64 2:4.0.4-2ubuntu1 [708 kB] Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 krb5-locales all 1.20.1-5build1 [13.7 kB] Get:107 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 readline-common all 8.2-3 [56.2 kB] Get:108 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libreadline8 amd64 8.2-3 [152 kB] Get:109 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libsqlite3-0 amd64 3.44.2-1 [685 kB] Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 openssl amd64 3.0.10-1ubuntu3 [1188 kB] Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 bash-completion all 1:2.11-8 [180 kB] Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 bsdextrautils amd64 2.39.2-6ubuntu1 [73.5 kB] Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 libpng16-16 amd64 1.6.40-2 [186 kB] Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 xz-utils amd64 5.4.5-0.1 [268 kB] Get:115 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 g++ amd64 4:13.2.0-2ubuntu1 [1122 B] Get:116 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 gcc amd64 4:13.2.0-2ubuntu1 [5166 B] Get:117 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 cpp amd64 4:13.2.0-2ubuntu1 [29.0 kB] Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 dpkg-dev all 1.22.1ubuntu3 [1148 kB] Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 libdpkg-perl all 1.22.1ubuntu3 [286 kB] Get:120 http://ftpmaster.internal/ubuntu noble/main amd64 lto-disabled-list all 44 [12.4 kB] Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 libfakeroot amd64 1.32.2-1 [32.1 kB] Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 fakeroot amd64 1.32.2-1 [67.1 kB] Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 optipng amd64 0.7.7-3 [83.3 kB] Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 pinentry-curses amd64 1.2.1-3ubuntu1 [34.9 kB] Preconfiguring packages ... Fetched 107 MB in 1s (129 MB/s) (Reading database ... 13648 files and directories currently installed.) Preparing to unpack .../00-libnsl-dev_1.3.0-3_amd64.deb ... Unpacking libnsl-dev:amd64 (1.3.0-3) over (1.3.0-2build2) ... Preparing to unpack .../01-libc6-dev_2.38-3ubuntu1_amd64.deb ... Unpacking libc6-dev:amd64 (2.38-3ubuntu1) over (2.38-1ubuntu6) ... Preparing to unpack .../02-libc-dev-bin_2.38-3ubuntu1_amd64.deb ... Unpacking libc-dev-bin (2.38-3ubuntu1) over (2.38-1ubuntu6) ... Preparing to unpack .../03-libtirpc-common_1.3.4+ds-1_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1) over (1.3.3+ds-1) ... Preparing to unpack .../04-libtirpc-dev_1.3.4+ds-1_amd64.deb ... Unpacking libtirpc-dev:amd64 (1.3.4+ds-1) over (1.3.3+ds-1) ... Preparing to unpack .../05-libgssapi-krb5-2_1.20.1-5build1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.20.1-5build1) over (1.20.1-3ubuntu1) ... Preparing to unpack .../06-libkrb5-3_1.20.1-5build1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.20.1-5build1) over (1.20.1-3ubuntu1) ... Preparing to unpack .../07-libk5crypto3_1.20.1-5build1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.20.1-5build1) over (1.20.1-3ubuntu1) ... Preparing to unpack .../08-libkrb5support0_1.20.1-5build1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20.1-5build1) over (1.20.1-3ubuntu1) ... Preparing to unpack .../09-libssl3_3.0.10-1ubuntu3_amd64.deb ... Unpacking libssl3:amd64 (3.0.10-1ubuntu3) over (3.0.10-1ubuntu2) ... Preparing to unpack .../10-libtirpc3_1.3.4+ds-1_amd64.deb ... Unpacking libtirpc3:amd64 (1.3.4+ds-1) over (1.3.3+ds-1) ... Preparing to unpack .../11-libnsl2_1.3.0-3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3) over (1.3.0-2build2) ... Preparing to unpack .../12-linux-libc-dev_6.6.0-13.13_amd64.deb ... Unpacking linux-libc-dev:amd64 (6.6.0-13.13) over (6.5.0-9.9) ... Preparing to unpack .../13-libcc1-0_13.2.0-7ubuntu1_amd64.deb ... Unpacking libcc1-0:amd64 (13.2.0-7ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../14-gcc-13-base_13.2.0-7ubuntu1_amd64.deb ... Unpacking gcc-13-base:amd64 (13.2.0-7ubuntu1) over (13.2.0-4ubuntu3) ... Setting up gcc-13-base:amd64 (13.2.0-7ubuntu1) ... (Reading database ... 13649 files and directories currently installed.) Preparing to unpack .../libgcc-s1_13.2.0-7ubuntu1_amd64.deb ... Unpacking libgcc-s1:amd64 (13.2.0-7ubuntu1) over (13.2.0-4ubuntu3) ... Setting up libgcc-s1:amd64 (13.2.0-7ubuntu1) ... (Reading database ... 13649 files and directories currently installed.) Preparing to unpack .../00-libgomp1_13.2.0-7ubuntu1_amd64.deb ... Unpacking libgomp1:amd64 (13.2.0-7ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../01-libitm1_13.2.0-7ubuntu1_amd64.deb ... Unpacking libitm1:amd64 (13.2.0-7ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../02-libatomic1_13.2.0-7ubuntu1_amd64.deb ... Unpacking libatomic1:amd64 (13.2.0-7ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../03-libasan8_13.2.0-7ubuntu1_amd64.deb ... Unpacking libasan8:amd64 (13.2.0-7ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../04-liblsan0_13.2.0-7ubuntu1_amd64.deb ... Unpacking liblsan0:amd64 (13.2.0-7ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../05-libtsan2_13.2.0-7ubuntu1_amd64.deb ... Unpacking libtsan2:amd64 (13.2.0-7ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../06-libubsan1_13.2.0-7ubuntu1_amd64.deb ... Unpacking libubsan1:amd64 (13.2.0-7ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../07-libhwasan0_13.2.0-7ubuntu1_amd64.deb ... Unpacking libhwasan0:amd64 (13.2.0-7ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../08-libquadmath0_13.2.0-7ubuntu1_amd64.deb ... Unpacking libquadmath0:amd64 (13.2.0-7ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../09-g++-13_13.2.0-7ubuntu1_amd64.deb ... Unpacking g++-13 (13.2.0-7ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../10-libstdc++-13-dev_13.2.0-7ubuntu1_amd64.deb ... Unpacking libstdc++-13-dev:amd64 (13.2.0-7ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../11-libgcc-13-dev_13.2.0-7ubuntu1_amd64.deb ... Unpacking libgcc-13-dev:amd64 (13.2.0-7ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../12-gcc-13_13.2.0-7ubuntu1_amd64.deb ... Unpacking gcc-13 (13.2.0-7ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../13-cpp-13_13.2.0-7ubuntu1_amd64.deb ... Unpacking cpp-13 (13.2.0-7ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../14-libstdc++6_13.2.0-7ubuntu1_amd64.deb ... Unpacking libstdc++6:amd64 (13.2.0-7ubuntu1) over (13.2.0-4ubuntu3) ... Setting up libstdc++6:amd64 (13.2.0-7ubuntu1) ... (Reading database ... 13649 files and directories currently installed.) Preparing to unpack .../libzstd1_1.5.5+dfsg2-2_amd64.deb ... Unpacking libzstd1:amd64 (1.5.5+dfsg2-2) over (1.5.5+dfsg2-1ubuntu2) ... Setting up libzstd1:amd64 (1.5.5+dfsg2-2) ... (Reading database ... 13649 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.3.dfsg-3ubuntu1_amd64.deb ... Unpacking zlib1g:amd64 (1:1.3.dfsg-3ubuntu1) over (1:1.2.13.dfsg-1ubuntu5) ... Setting up zlib1g:amd64 (1:1.3.dfsg-3ubuntu1) ... (Reading database ... 13649 files and directories currently installed.) Preparing to unpack .../0-libgprofng0_2.41-7ubuntu1_amd64.deb ... Unpacking libgprofng0:amd64 (2.41-7ubuntu1) over (2.41-5ubuntu1) ... Preparing to unpack .../1-libctf0_2.41-7ubuntu1_amd64.deb ... Unpacking libctf0:amd64 (2.41-7ubuntu1) over (2.41-5ubuntu1) ... Preparing to unpack .../2-libctf-nobfd0_2.41-7ubuntu1_amd64.deb ... Unpacking libctf-nobfd0:amd64 (2.41-7ubuntu1) over (2.41-5ubuntu1) ... Preparing to unpack .../3-libsframe1_2.41-7ubuntu1_amd64.deb ... Unpacking libsframe1:amd64 (2.41-7ubuntu1) over (2.41-5ubuntu1) ... Preparing to unpack .../4-libbinutils_2.41-7ubuntu1_amd64.deb ... Unpacking libbinutils:amd64 (2.41-7ubuntu1) over (2.41-5ubuntu1) ... Preparing to unpack .../5-binutils-common_2.41-7ubuntu1_amd64.deb ... Unpacking binutils-common:amd64 (2.41-7ubuntu1) over (2.41-5ubuntu1) ... Preparing to unpack .../6-binutils_2.41-7ubuntu1_amd64.deb ... Unpacking binutils (2.41-7ubuntu1) over (2.41-5ubuntu1) ... Preparing to unpack .../7-binutils-x86-64-linux-gnu_2.41-7ubuntu1_amd64.deb ... Unpacking binutils-x86-64-linux-gnu (2.41-7ubuntu1) over (2.41-5ubuntu1) ... Preparing to unpack .../8-libc6_2.38-3ubuntu1_amd64.deb ... Unpacking libc6:amd64 (2.38-3ubuntu1) over (2.38-1ubuntu6) ... Setting up libc6:amd64 (2.38-3ubuntu1) ... (Reading database ... 13649 files and directories currently installed.) Preparing to unpack .../base-files_13ubuntu5_amd64.deb ... Unpacking base-files (13ubuntu5) over (13ubuntu3) ... Setting up base-files (13ubuntu5) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 13649 files and directories currently installed.) Preparing to unpack .../debianutils_5.14_amd64.deb ... Unpacking debianutils (5.14) over (5.8-1) ... Setting up debianutils (5.14) ... (Reading database ... 13648 files and directories currently installed.) Preparing to unpack .../bash_5.2.21-2ubuntu1_amd64.deb ... Unpacking bash (5.2.21-2ubuntu1) over (5.2.15-2ubuntu1) ... Setting up bash (5.2.21-2ubuntu1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 13648 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.39.2-6ubuntu1_amd64.deb ... Unpacking bsdutils (1:2.39.2-6ubuntu1) over (1:2.39.1-4ubuntu2) ... Setting up bsdutils (1:2.39.2-6ubuntu1) ... (Reading database ... 13648 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.10-1_amd64.deb ... Unpacking diffutils (1:3.10-1) over (1:3.8-4) ... Setting up diffutils (1:3.10-1) ... (Reading database ... 13648 files and directories currently installed.) Preparing to unpack .../liblzma5_5.4.5-0.1_amd64.deb ... Unpacking liblzma5:amd64 (5.4.5-0.1) over (5.4.1-0.2) ... Setting up liblzma5:amd64 (5.4.5-0.1) ... (Reading database ... 13648 files and directories currently installed.) Preparing to unpack .../libapparmor1_4.0.0~alpha2-0ubuntu6_amd64.deb ... Unpacking libapparmor1:amd64 (4.0.0~alpha2-0ubuntu6) over (4.0.0~alpha2-0ubuntu5) ... Preparing to unpack .../libaudit-common_1%3a3.1.1-1build1_all.deb ... Unpacking libaudit-common (1:3.1.1-1build1) over (1:3.1.1-1) ... Setting up libaudit-common (1:3.1.1-1build1) ... (Reading database ... 13648 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.8.3-1build3_amd64.deb ... Unpacking libcap-ng0:amd64 (0.8.3-1build3) over (0.8.3-1build2) ... Setting up libcap-ng0:amd64 (0.8.3-1build3) ... (Reading database ... 13648 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a3.1.1-1build1_amd64.deb ... Unpacking libaudit1:amd64 (1:3.1.1-1build1) over (1:3.1.1-1) ... Setting up libaudit1:amd64 (1:3.1.1-1build1) ... (Reading database ... 13648 files and directories currently installed.) Preparing to unpack .../libblkid1_2.39.2-6ubuntu1_amd64.deb ... Unpacking libblkid1:amd64 (2.39.2-6ubuntu1) over (2.39.1-4ubuntu2) ... Setting up libblkid1:amd64 (2.39.2-6ubuntu1) ... (Reading database ... 13648 files and directories currently installed.) Preparing to unpack .../libselinux1_3.5-1build2_amd64.deb ... Unpacking libselinux1:amd64 (3.5-1build2) over (3.5-1) ... Setting up libselinux1:amd64 (3.5-1build2) ... (Reading database ... 13648 files and directories currently installed.) Preparing to unpack .../libmount1_2.39.2-6ubuntu1_amd64.deb ... Unpacking libmount1:amd64 (2.39.2-6ubuntu1) over (2.39.1-4ubuntu2) ... Setting up libmount1:amd64 (2.39.2-6ubuntu1) ... (Reading database ... 13648 files and directories currently installed.) Preparing to unpack .../libpam0g_1.5.2-9.1ubuntu1_amd64.deb ... Unpacking libpam0g:amd64 (1.5.2-9.1ubuntu1) over (1.5.2-6ubuntu1) ... Setting up libpam0g:amd64 (1.5.2-9.1ubuntu1) ... (Reading database ... 13647 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.5.4-2ubuntu1_amd64.deb ... Unpacking libseccomp2:amd64 (2.5.4-2ubuntu1) over (2.5.4-1ubuntu3) ... Setting up libseccomp2:amd64 (2.5.4-2ubuntu1) ... (Reading database ... 13647 files and directories currently installed.) Preparing to unpack .../systemd-sysv_253.5-1ubuntu7_amd64.deb ... Unpacking systemd-sysv (253.5-1ubuntu7) over (253.5-1ubuntu6) ... Preparing to unpack .../systemd-dev_253.5-1ubuntu7_all.deb ... Unpacking systemd-dev (253.5-1ubuntu7) over (253.5-1ubuntu6) ... Setting up libssl3:amd64 (3.0.10-1ubuntu3) ... (Reading database ... 13647 files and directories currently installed.) Preparing to unpack .../systemd_253.5-1ubuntu7_amd64.deb ... Unpacking systemd (253.5-1ubuntu7) over (253.5-1ubuntu6) ... Preparing to unpack .../libsystemd-shared_253.5-1ubuntu7_amd64.deb ... Unpacking libsystemd-shared:amd64 (253.5-1ubuntu7) over (253.5-1ubuntu6) ... Preparing to unpack .../libargon2-1_0~20190702+dfsg-4_amd64.deb ... Unpacking libargon2-1:amd64 (0~20190702+dfsg-4) over (0~20190702+dfsg-3) ... Preparing to unpack .../libuuid1_2.39.2-6ubuntu1_amd64.deb ... Unpacking libuuid1:amd64 (2.39.2-6ubuntu1) over (2.39.1-4ubuntu2) ... Setting up libuuid1:amd64 (2.39.2-6ubuntu1) ... (Reading database ... 13647 files and directories currently installed.) Preparing to unpack .../libcryptsetup12_2%3a2.6.1-5ubuntu1_amd64.deb ... Unpacking libcryptsetup12:amd64 (2:2.6.1-5ubuntu1) over (2:2.6.1-4ubuntu3) ... Preparing to unpack .../libfdisk1_2.39.2-6ubuntu1_amd64.deb ... Unpacking libfdisk1:amd64 (2.39.2-6ubuntu1) over (2.39.1-4ubuntu2) ... Preparing to unpack .../mount_2.39.2-6ubuntu1_amd64.deb ... Unpacking mount (2.39.2-6ubuntu1) over (2.39.1-4ubuntu2) ... Preparing to unpack .../libsystemd0_253.5-1ubuntu7_amd64.deb ... Unpacking libsystemd0:amd64 (253.5-1ubuntu7) over (253.5-1ubuntu6) ... Setting up libsystemd0:amd64 (253.5-1ubuntu7) ... (Reading database ... 13647 files and directories currently installed.) Preparing to unpack .../libudev1_253.5-1ubuntu7_amd64.deb ... Unpacking libudev1:amd64 (253.5-1ubuntu7) over (253.5-1ubuntu6) ... Setting up libudev1:amd64 (253.5-1ubuntu7) ... (Reading database ... 13647 files and directories currently installed.) Preparing to unpack .../libxxhash0_0.8.2-2_amd64.deb ... Unpacking libxxhash0:amd64 (0.8.2-2) over (0.8.1-1) ... Setting up libxxhash0:amd64 (0.8.2-2) ... (Reading database ... 13647 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.7.7_amd64.deb ... Unpacking libapt-pkg6.0:amd64 (2.7.7) over (2.7.3) ... Setting up libapt-pkg6.0:amd64 (2.7.7) ... (Reading database ... 13647 files and directories currently installed.) Preparing to unpack .../dpkg_1.22.1ubuntu3_amd64.deb ... Unpacking dpkg (1.22.1ubuntu3) over (1.22.0ubuntu1) ... Setting up dpkg (1.22.1ubuntu3) ... (Reading database ... 13645 files and directories currently installed.) Preparing to unpack .../archives/grep_3.11-3_amd64.deb ... Unpacking grep (3.11-3) over (3.11-2) ... Setting up grep (3.11-3) ... (Reading database ... 13645 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.4+20231121-1build1_amd64.deb ... Unpacking ncurses-bin (6.4+20231121-1build1) over (6.4+20230625-2) ... Setting up ncurses-bin (6.4+20231121-1build1) ... (Reading database ... 13645 files and directories currently installed.) Preparing to unpack .../libperl5.36_5.36.0-10ubuntu1_amd64.deb ... Unpacking libperl5.36:amd64 (5.36.0-10ubuntu1) over (5.36.0-9ubuntu1) ... Preparing to unpack .../perl_5.36.0-10ubuntu1_amd64.deb ... Unpacking perl (5.36.0-10ubuntu1) over (5.36.0-9ubuntu1) ... Preparing to unpack .../perl-base_5.36.0-10ubuntu1_amd64.deb ... Unpacking perl-base (5.36.0-10ubuntu1) over (5.36.0-9ubuntu1) ... Setting up perl-base (5.36.0-10ubuntu1) ... (Reading database ... 13645 files and directories currently installed.) Preparing to unpack .../perl-modules-5.36_5.36.0-10ubuntu1_all.deb ... Unpacking perl-modules-5.36 (5.36.0-10ubuntu1) over (5.36.0-9ubuntu1) ... Preparing to unpack .../libdb5.3_5.3.28+dfsg2-4_amd64.deb ... Unpacking libdb5.3:amd64 (5.3.28+dfsg2-4) over (5.3.28+dfsg2-2) ... Setting up libdb5.3:amd64 (5.3.28+dfsg2-4) ... (Reading database ... 13645 files and directories currently installed.) Preparing to unpack .../util-linux_2.39.2-6ubuntu1_amd64.deb ... Unpacking util-linux (2.39.2-6ubuntu1) over (2.39.1-4ubuntu2) ... Setting up util-linux (2.39.2-6ubuntu1) ... (Reading database ... 13646 files and directories currently installed.) Preparing to unpack .../base-passwd_3.6.2_amd64.deb ... Unpacking base-passwd (3.6.2) over (3.6.1) ... Setting up base-passwd (3.6.2) ... (Reading database ... 13646 files and directories currently installed.) Preparing to unpack .../libc-bin_2.38-3ubuntu1_amd64.deb ... Unpacking libc-bin (2.38-3ubuntu1) over (2.38-1ubuntu6) ... Setting up libc-bin (2.38-3ubuntu1) ... (Reading database ... 13646 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.4+20231121-1build1_all.deb ... Unpacking ncurses-base (6.4+20231121-1build1) over (6.4+20230625-2) ... Setting up ncurses-base (6.4+20231121-1build1) ... (Reading database ... 13646 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_3.08-3ubuntu1_amd64.deb ... Unpacking sysvinit-utils (3.08-3ubuntu1) over (3.07-1ubuntu1) ... Setting up sysvinit-utils (3.08-3ubuntu1) ... (Reading database ... 13646 files and directories currently installed.) Preparing to unpack .../archives/apt_2.7.7_amd64.deb ... Unpacking apt (2.7.7) over (2.7.3) ... Setting up apt (2.7.7) ... (Reading database ... 13646 files and directories currently installed.) Preparing to unpack .../apt-utils_2.7.7_amd64.deb ... Unpacking apt-utils (2.7.7) over (2.7.3) ... Preparing to unpack .../ubuntu-keyring_2023.11.28.1_all.deb ... Unpacking ubuntu-keyring (2023.11.28.1) over (2021.03.26) ... Setting up ubuntu-keyring (2023.11.28.1) ... Selecting previously unselected package libunistring5:amd64. (Reading database ... 13646 files and directories currently installed.) Preparing to unpack .../libunistring5_1.1-2_amd64.deb ... Unpacking libunistring5:amd64 (1.1-2) ... Setting up libunistring5:amd64 (1.1-2) ... (Reading database ... 13651 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.3.4-1build1_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.4-1build1) over (2.3.4-1) ... Setting up libidn2-0:amd64 (2.3.4-1build1) ... (Reading database ... 13651 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.8.1-4ubuntu6_amd64.deb ... Unpacking libgnutls30:amd64 (3.8.1-4ubuntu6) over (3.8.1-4ubuntu1) ... Setting up libgnutls30:amd64 (3.8.1-4ubuntu6) ... (Reading database ... 13652 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.5.2-9.1ubuntu1_amd64.deb ... Unpacking libpam-modules-bin (1.5.2-9.1ubuntu1) over (1.5.2-6ubuntu1) ... Setting up libpam-modules-bin (1.5.2-9.1ubuntu1) ... (Reading database ... 13651 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.5.2-9.1ubuntu1_amd64.deb ... Unpacking libpam-modules:amd64 (1.5.2-9.1ubuntu1) over (1.5.2-6ubuntu1) ... Setting up libpam-modules:amd64 (1.5.2-9.1ubuntu1) ... (Reading database ... 13650 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.39.2-6ubuntu1_amd64.deb ... Unpacking libsmartcols1:amd64 (2.39.2-6ubuntu1) over (2.39.1-4ubuntu2) ... Setting up libsmartcols1:amd64 (2.39.2-6ubuntu1) ... (Reading database ... 13650 files and directories currently installed.) Preparing to unpack .../uuid-runtime_2.39.2-6ubuntu1_amd64.deb ... Unpacking uuid-runtime (2.39.2-6ubuntu1) over (2.39.1-4ubuntu2) ... Preparing to unpack .../libgpg-error-l10n_1.47-3_all.deb ... Unpacking libgpg-error-l10n (1.47-3) over (1.47-2) ... Preparing to unpack .../libgpg-error0_1.47-3_amd64.deb ... Unpacking libgpg-error0:amd64 (1.47-3) over (1.47-2) ... Setting up libgpg-error0:amd64 (1.47-3) ... (Reading database ... 13650 files and directories currently installed.) Preparing to unpack .../libpam-runtime_1.5.2-9.1ubuntu1_all.deb ... Unpacking libpam-runtime (1.5.2-9.1ubuntu1) over (1.5.2-6ubuntu1) ... Setting up libpam-runtime (1.5.2-9.1ubuntu1) ... (Reading database ... 13649 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.5-1build1_all.deb ... Unpacking libsemanage-common (3.5-1build1) over (3.5-1) ... Setting up libsemanage-common (3.5-1build1) ... (Reading database ... 13649 files and directories currently installed.) Preparing to unpack .../libsepol2_3.5-2_amd64.deb ... Unpacking libsepol2:amd64 (3.5-2) over (3.5-1) ... Setting up libsepol2:amd64 (3.5-2) ... (Reading database ... 13649 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.5-1build1_amd64.deb ... Unpacking libsemanage2:amd64 (3.5-1build1) over (3.5-1) ... Setting up libsemanage2:amd64 (3.5-1build1) ... (Reading database ... 13649 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.4+20231121-1build1_amd64.deb ... Unpacking libncursesw6:amd64 (6.4+20231121-1build1) over (6.4+20230625-2) ... Preparing to unpack .../libtinfo6_6.4+20231121-1build1_amd64.deb ... Unpacking libtinfo6:amd64 (6.4+20231121-1build1) over (6.4+20230625-2) ... Setting up libtinfo6:amd64 (6.4+20231121-1build1) ... (Reading database ... 13649 files and directories currently installed.) Preparing to unpack .../libffi8_3.4.4-2_amd64.deb ... Unpacking libffi8:amd64 (3.4.4-2) over (3.4.4-1) ... Setting up libffi8:amd64 (3.4.4-2) ... (Reading database ... 13649 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-2ubuntu1_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-2ubuntu1) over (2:4.0.3-1ubuntu1) ... Preparing to unpack .../01-mawk_1.3.4.20231102-1_amd64.deb ... Unpacking mawk (1.3.4.20231102-1) over (1.3.4.20230730-1) ... Preparing to unpack .../02-procps_2%3a4.0.4-2ubuntu1_amd64.deb ... Unpacking procps (2:4.0.4-2ubuntu1) over (2:4.0.3-1ubuntu1) ... Preparing to unpack .../03-krb5-locales_1.20.1-5build1_all.deb ... Unpacking krb5-locales (1.20.1-5build1) over (1.20.1-3ubuntu1) ... Preparing to unpack .../04-readline-common_8.2-3_all.deb ... Unpacking readline-common (8.2-3) over (8.2-1.3) ... Preparing to unpack .../05-libreadline8_8.2-3_amd64.deb ... Unpacking libreadline8:amd64 (8.2-3) over (8.2-1.3) ... Preparing to unpack .../06-libsqlite3-0_3.44.2-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.44.2-1) over (3.42.0-1) ... Preparing to unpack .../07-openssl_3.0.10-1ubuntu3_amd64.deb ... Unpacking openssl (3.0.10-1ubuntu3) over (3.0.10-1ubuntu2) ... Preparing to unpack .../08-bash-completion_1%3a2.11-8_all.deb ... Unpacking bash-completion (1:2.11-8) over (1:2.11-7) ... Preparing to unpack .../09-bsdextrautils_2.39.2-6ubuntu1_amd64.deb ... Unpacking bsdextrautils (2.39.2-6ubuntu1) over (2.39.1-4ubuntu2) ... Preparing to unpack .../10-libpng16-16_1.6.40-2_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.40-2) over (1.6.40-1) ... Preparing to unpack .../11-xz-utils_5.4.5-0.1_amd64.deb ... Unpacking xz-utils (5.4.5-0.1) over (5.4.1-0.2) ... Preparing to unpack .../12-g++_4%3a13.2.0-2ubuntu1_amd64.deb ... Unpacking g++ (4:13.2.0-2ubuntu1) over (4:13.2.0-1ubuntu1) ... Preparing to unpack .../13-gcc_4%3a13.2.0-2ubuntu1_amd64.deb ... Unpacking gcc (4:13.2.0-2ubuntu1) over (4:13.2.0-1ubuntu1) ... Preparing to unpack .../14-cpp_4%3a13.2.0-2ubuntu1_amd64.deb ... Unpacking cpp (4:13.2.0-2ubuntu1) over (4:13.2.0-1ubuntu1) ... Preparing to unpack .../15-dpkg-dev_1.22.1ubuntu3_all.deb ... Unpacking dpkg-dev (1.22.1ubuntu3) over (1.22.0ubuntu1) ... Preparing to unpack .../16-libdpkg-perl_1.22.1ubuntu3_all.deb ... Unpacking libdpkg-perl (1.22.1ubuntu3) over (1.22.0ubuntu1) ... Preparing to unpack .../17-lto-disabled-list_44_all.deb ... Unpacking lto-disabled-list (44) over (43) ... Preparing to unpack .../18-libfakeroot_1.32.2-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.32.2-1) over (1.32.1-1) ... Preparing to unpack .../19-fakeroot_1.32.2-1_amd64.deb ... Unpacking fakeroot (1.32.2-1) over (1.32.1-1) ... Preparing to unpack .../20-optipng_0.7.7-3_amd64.deb ... Unpacking optipng (0.7.7-3) over (0.7.7-2build1) ... Preparing to unpack .../21-pinentry-curses_1.2.1-3ubuntu1_amd64.deb ... Unpacking pinentry-curses (1.2.1-3ubuntu1) over (1.2.1-1ubuntu1) ... Setting up lto-disabled-list (44) ... Setting up libapparmor1:amd64 (4.0.0~alpha2-0ubuntu6) ... Setting up apt-utils (2.7.7) ... Setting up bsdextrautils (2.39.2-6ubuntu1) ... Setting up cpp-13 (13.2.0-7ubuntu1) ... Setting up libtirpc-common (1.3.4+ds-1) ... Setting up libargon2-1:amd64 (0~20190702+dfsg-4) ... Setting up libsqlite3-0:amd64 (3.44.2-1) ... Setting up binutils-common:amd64 (2.41-7ubuntu1) ... Setting up linux-libc-dev:amd64 (6.6.0-13.13) ... Setting up libctf-nobfd0:amd64 (2.41-7ubuntu1) ... Setting up systemd-dev (253.5-1ubuntu7) ... Setting up krb5-locales (1.20.1-5build1) ... Setting up libgomp1:amd64 (13.2.0-7ubuntu1) ... Setting up libsframe1:amd64 (2.41-7ubuntu1) ... Setting up libfakeroot:amd64 (1.32.2-1) ... Setting up libkrb5support0:amd64 (1.20.1-5build1) ... Setting up fakeroot (1.32.2-1) ... Setting up perl-modules-5.36 (5.36.0-10ubuntu1) ... Setting up bash-completion (1:2.11-8) ... Setting up xz-utils (5.4.5-0.1) ... Setting up libquadmath0:amd64 (13.2.0-7ubuntu1) ... Setting up libproc2-0:amd64 (2:4.0.4-2ubuntu1) ... Setting up libpng16-16:amd64 (1.6.40-2) ... Setting up libatomic1:amd64 (13.2.0-7ubuntu1) ... Setting up libsystemd-shared:amd64 (253.5-1ubuntu7) ... Setting up libncursesw6:amd64 (6.4+20231121-1build1) ... Setting up libk5crypto3:amd64 (1.20.1-5build1) ... Setting up libfdisk1:amd64 (2.39.2-6ubuntu1) ... Setting up libubsan1:amd64 (13.2.0-7ubuntu1) ... Setting up mount (2.39.2-6ubuntu1) ... Setting up uuid-runtime (2.39.2-6ubuntu1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of restart. Setting up libhwasan0:amd64 (13.2.0-7ubuntu1) ... Setting up cpp (4:13.2.0-2ubuntu1) ... Setting up libasan8:amd64 (13.2.0-7ubuntu1) ... Setting up procps (2:4.0.4-2ubuntu1) ... Installing new version of config file /etc/sysctl.conf ... Setting up libcryptsetup12:amd64 (2:2.6.1-5ubuntu1) ... Setting up mawk (1.3.4.20231102-1) ... Setting up libkrb5-3:amd64 (1.20.1-5build1) ... Setting up libtsan2:amd64 (13.2.0-7ubuntu1) ... Setting up libbinutils:amd64 (2.41-7ubuntu1) ... Setting up libc-dev-bin (2.38-3ubuntu1) ... Setting up openssl (3.0.10-1ubuntu3) ... Setting up libgpg-error-l10n (1.47-3) ... Setting up readline-common (8.2-3) ... Setting up libcc1-0:amd64 (13.2.0-7ubuntu1) ... Setting up libperl5.36:amd64 (5.36.0-10ubuntu1) ... Setting up liblsan0:amd64 (13.2.0-7ubuntu1) ... Setting up libitm1:amd64 (13.2.0-7ubuntu1) ... Setting up libctf0:amd64 (2.41-7ubuntu1) ... Setting up pinentry-curses (1.2.1-3ubuntu1) ... Setting up libreadline8:amd64 (8.2-3) ... Setting up systemd (253.5-1ubuntu7) ... Initializing machine ID from random generator. Setting up perl (5.36.0-10ubuntu1) ... Setting up libgprofng0:amd64 (2.41-7ubuntu1) ... Setting up optipng (0.7.7-3) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-5build1) ... Setting up libdpkg-perl (1.22.1ubuntu3) ... Setting up libgcc-13-dev:amd64 (13.2.0-7ubuntu1) ... Setting up binutils-x86-64-linux-gnu (2.41-7ubuntu1) ... Setting up libtirpc3:amd64 (1.3.4+ds-1) ... Setting up systemd-sysv (253.5-1ubuntu7) ... Setting up binutils (2.41-7ubuntu1) ... Setting up dpkg-dev (1.22.1ubuntu3) ... Setting up libtirpc-dev:amd64 (1.3.4+ds-1) ... Setting up gcc-13 (13.2.0-7ubuntu1) ... Setting up libnsl2:amd64 (1.3.0-3) ... Setting up gcc (4:13.2.0-2ubuntu1) ... Setting up libnsl-dev:amd64 (1.3.0-3) ... Setting up libc6-dev:amd64 (2.38-3ubuntu1) ... Setting up libstdc++-13-dev:amd64 (13.2.0-7ubuntu1) ... Setting up g++-13 (13.2.0-7ubuntu1) ... Setting up g++ (4:13.2.0-2ubuntu1) ... Processing triggers for libc-bin (2.38-3ubuntu1) ... Processing triggers for debianutils (5.14) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-27029617 amd64 noble-proposed -c chroot:build-PACKAGEBUILD-27029617 --arch=amd64 --dist=noble-proposed --nolog -A r-cran-seurat_5.0.1-1.dsc Initiating build PACKAGEBUILD-27029617 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-167-generic #184-Ubuntu SMP Tue Oct 31 09:21:49 UTC 2023 x86_64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on lcy02-amd64-069.buildd +==============================================================================+ | r-cran-seurat 5.0.1-1 (amd64) Tue, 28 Nov 2023 18:28:41 +0000 | +==============================================================================+ Package: r-cran-seurat Version: 5.0.1-1 Source Version: 5.0.1-1 Distribution: noble-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-27029617/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/r-cran-seurat-WFpMyy/resolver-uAxoaz' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-cran-seurat_5.0.1-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/r-cran-seurat-WFpMyy/r-cran-seurat-5.0.1' with '<>' I: NOTICE: Log filtering will replace 'build/r-cran-seurat-WFpMyy' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-seuratobject (>= 5.0.1), r-cran-cluster, r-cran-cowplot, r-cran-fastdummies, r-cran-fitdistrplus, r-cran-future, r-cran-future.apply, r-cran-generics (>= 0.1.3), r-cran-ggplot2, r-cran-ggrepel, r-cran-ggridges, r-cran-httr, r-cran-ica, r-cran-igraph, r-cran-irlba, r-cran-jsonlite, r-cran-kernsmooth, r-cran-leiden, r-cran-lifecycle, r-cran-lmtest, r-cran-mass, r-cran-matrix (>= 1.5-0), r-cran-matrixstats, r-cran-miniui, r-cran-patchwork, r-cran-pbapply, r-cran-plotly, r-cran-png, r-cran-progressr, r-cran-purrr, r-cran-rann, r-cran-rcolorbrewer, r-cran-rcpp (>= 1.0.7), r-cran-rcppannoy, r-cran-rcpphnsw, r-cran-reticulate, r-cran-rlang, r-cran-rocr, r-cran-rspectra, r-cran-rtsne, r-cran-scales, r-cran-scattermore (>= 1.2), r-cran-sctransform (>= 0.4.1), r-cran-shiny, r-cran-spatstat.explore, r-cran-spatstat.geom, r-cran-tibble, r-cran-uwot, r-cran-rcppeigen, r-cran-rcppprogress, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-seuratobject (>= 5.0.1), r-cran-cluster, r-cran-cowplot, r-cran-fastdummies, r-cran-fitdistrplus, r-cran-future, r-cran-future.apply, r-cran-generics (>= 0.1.3), r-cran-ggplot2, r-cran-ggrepel, r-cran-ggridges, r-cran-httr, r-cran-ica, r-cran-igraph, r-cran-irlba, r-cran-jsonlite, r-cran-kernsmooth, r-cran-leiden, r-cran-lifecycle, r-cran-lmtest, r-cran-mass, r-cran-matrix (>= 1.5-0), r-cran-matrixstats, r-cran-miniui, r-cran-patchwork, r-cran-pbapply, r-cran-plotly, r-cran-png, r-cran-progressr, r-cran-purrr, r-cran-rann, r-cran-rcolorbrewer, r-cran-rcpp (>= 1.0.7), r-cran-rcppannoy, r-cran-rcpphnsw, r-cran-reticulate, r-cran-rlang, r-cran-rocr, r-cran-rspectra, r-cran-rtsne, r-cran-scales, r-cran-scattermore (>= 1.2), r-cran-sctransform (>= 0.4.1), r-cran-shiny, r-cran-spatstat.explore, r-cran-spatstat.geom, r-cran-tibble, r-cran-uwot, r-cran-rcppeigen, r-cran-rcppprogress, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [707 B] Get:5 copy:/<>/apt_archive ./ Packages [791 B] Fetched 2461 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils bash-completion debconf-i18n krb5-locales libgpg-error-l10n libgpm2 liblocale-gettext-perl libnss-nis libnss-nisplus libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libunistring2 psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev dctrl-tools debhelper debugedit dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax fonts-noto-core fonts-noto-mono gettext gettext-base gfortran gfortran-13 groff-base icu-devtools intltool-debian javascript-common libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libboost1.81-dev libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libclone-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdw1 libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-13-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu72 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 libldap2 liblerc4 liblua5.3-0 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses6 libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpsl5 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libreadline-dev librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff6 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libuv1 libvariable-magic-perl libwebp7 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 libyaml-0-2 littler m4 man-db media-types node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data pkg-config pkgconf pkgconf-bin po-debconf python3 python3-minimal python3.11 python3.11-minimal r-base-core r-base-dev r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh r-cran-bitops r-cran-bslib r-cran-cachem r-cran-catools r-cran-cli r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-colourpicker r-cran-commonmark r-cran-cowplot r-cran-cpp11 r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-data.table r-cran-deldir r-cran-digest r-cran-dotcall64 r-cran-dplyr r-cran-dqrng r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastdummies r-cran-fastmap r-cran-fitdistrplus r-cran-fnn r-cran-fontawesome r-cran-fs r-cran-future r-cran-future.apply r-cran-gdata r-cran-generics r-cran-ggplot2 r-cran-ggrepel r-cran-ggridges r-cran-globals r-cran-glue r-cran-goftest r-cran-gplots r-cran-gridextra r-cran-gtable r-cran-gtools r-cran-here r-cran-highr r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-ica r-cran-igraph r-cran-irlba r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later r-cran-lattice r-cran-lazyeval r-cran-leiden r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-lmtest r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-miniui r-cran-munsell r-cran-nlme r-cran-openssl r-cran-parallelly r-cran-patchwork r-cran-pbapply r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plotly r-cran-plyr r-cran-png r-cran-polyclip r-cran-progressr r-cran-promises r-cran-purrr r-cran-r6 r-cran-rann r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppannoy r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rcpphnsw r-cran-rcppprogress r-cran-rcpptoml r-cran-reshape2 r-cran-reticulate r-cran-rlang r-cran-rmarkdown r-cran-rocr r-cran-rprojroot r-cran-rspectra r-cran-rtsne r-cran-sass r-cran-scales r-cran-scattermore r-cran-sctransform r-cran-seuratobject r-cran-shiny r-cran-shinyjs r-cran-sitmo r-cran-sourcetools r-cran-sp r-cran-spam r-cran-spatstat.data r-cran-spatstat.explore r-cran-spatstat.geom r-cran-spatstat.random r-cran-spatstat.sparse r-cran-spatstat.utils r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-tensor r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-uwot r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml r-cran-zoo ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc debtags dh-make postgresql-client-common gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-13-multilib gfortran-13-doc libcoarrays-dev groff apache2 | lighttpd | httpd liblapack-doc libboost1.81-doc libboost-atomic1.81-dev libboost-chrono1.81-dev libboost-container1.81-dev libboost-context1.81-dev libboost-contract1.81-dev libboost-coroutine1.81-dev libboost-date-time1.81-dev libboost-exception1.81-dev libboost-fiber1.81-dev libboost-filesystem1.81-dev libboost-graph1.81-dev libboost-graph-parallel1.81-dev libboost-iostreams1.81-dev libboost-locale1.81-dev libboost-log1.81-dev libboost-math1.81-dev libboost-mpi1.81-dev libboost-mpi-python1.81-dev libboost-numpy1.81-dev libboost-program-options1.81-dev libboost-python1.81-dev libboost-random1.81-dev libboost-regex1.81-dev libboost-serialization1.81-dev libboost-stacktrace1.81-dev libboost-system1.81-dev libboost-test1.81-dev libboost-thread1.81-dev libboost-timer1.81-dev libboost-type-erasure1.81-dev libboost-wave1.81-dev libboost1.81-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.81-dev low-memory-monitor libio-compress-brotli-perl icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix libjs-mathjax-doc liblzma-doc ncurses-doc libscalar-number-perl readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk libbusiness-isbn-perl libregexp-ipv6-perl libwww-perl libcurl4-gnutls-dev m4-doc apparmor less www-browser nodejs texlive-latex-recommended texlive-xetex texlive-luatex pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin ghc php python ruby libjs-katex citation-style-language-styles libmail-box-perl python3-doc python3-tk python3-venv python3.11-venv python3.11-doc binfmt-support elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo r-cran-rpart r-cran-callr r-cran-covr r-cran-processx r-cran-ps r-cran-rstudioapi r-cran-whoami r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-jpeg r-cran-viridis r-cran-testthat r-cran-xml2 r-cran-hmisc r-cran-bookdown r-cran-r.rsp r-cran-markdown r-cran-forcats r-cran-dbi r-cran-r.utils r-cran-rsqlite r-cran-waldo r-cran-readr r-cran-uuid r-cran-magick r-cran-sf r-cran-getopt r-cran-bit64 r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-units r-cran-vdiffr r-cran-roxygen2 r-cran-inline r-cran-devtools r-cran-tinytest r-cran-dichromat r-bioc-delayedarray r-bioc-hdf5array r-cran-spatstat.model r-cran-spatstat.linnet r-cran-spelling r-cran-bench r-cran-blob r-cran-brio r-cran-hms r-cran-pkgbuild r-cran-pkgload r-cran-plm r-cran-runit Recommended packages: devscripts cme git-buildpackage curl | wget | lynx bzip2-doc libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs node-jquery libldap-common libdevel-partialdump-perl libpng-tools publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl r-recommended r-doc-html r-cran-testthat r-cran-thematic r-cran-mockery r-cran-cairo r-cran-covr r-cran-forcats r-cran-gridgraphics r-cran-magick r-cran-maps r-cran-ragg r-cran-vdiffr r-cran-venndiagram r-cran-bench r-cran-brio r-cran-callr r-cran-decor r-cran-desc r-cran-lobstr r-cran-progress r-cran-spelling r-cran-webutils r-cran-bit64 r-cran-bit r-cran-r.utils r-cran-xts r-cran-nanotime r-cran-rhpcblasctl r-cran-roxygen2 r-cran-broom r-cran-dbi r-cran-dbplyr r-cran-rmysql r-cran-rpostgresql r-cran-rsqlite r-cran-mvtnorm libpcg-cpp-dev r-cran-unitizer r-cran-rgenoud r-cran-actuar r-cran-rsvg r-cran-r.rsp r-cran-markdown r-cran-pkgload r-cran-hexbin r-cran-hmisc r-cran-mapproj r-cran-multcomp r-cran-profvis r-cran-quantreg r-cran-rpart r-cran-sf r-cran-svglite r-cran-xml2 r-cran-devtools r-cran-ggbeeswarm r-cran-readr r-cran-testit r-cran-jpeg r-cran-ape r-bioc-graph r-cran-rgl r-cran-formatr r-cran-gridsvg r-cran-tikzdevice r-cran-webshot r-cran-rstudioapi node-highlight.js r-cran-network r-cran-qpdf r-cran-remotes r-cran-lintr r-cran-tidyverse r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-ggthemes r-cran-ggally r-cran-ggalluvial r-cran-dendextend r-cran-irdisplay r-cran-processx r-cran-palmerpenguins r-cran-rversions r-cran-doparallel r-cran-foreach r-cran-iterators r-cran-itertools r-cran-pbmcapply r-cran-furrr r-cran-tinytest r-cran-usethis r-cran-dygraphs r-cran-rsconnect r-cran-downlit r-cran-mockr r-cran-hms r-cran-gstat r-cran-terra r-cran-raster r-cran-fields r-cran-truncdist r-cran-sm r-cran-gsl r-cran-locfit r-cran-spatial r-cran-spatstat.linnet r-cran-spatstat.model r-cran-spatstat r-cran-formattable r-cran-pkgdown r-cran-waldo r-cran-zeallot r-cran-renv libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev dctrl-tools debhelper debugedit dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax fonts-noto-core fonts-noto-mono gettext gettext-base gfortran gfortran-13 groff-base icu-devtools intltool-debian javascript-common libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libboost1.81-dev libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libclone-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdw1 libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-13-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu72 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 libldap2 liblerc4 liblua5.3-0 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses6 libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpsl5 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libreadline-dev librtmp1 libsasl2-2 libsasl2-modules-db libsharpyuv0 libsm6 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff6 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libuv1 libvariable-magic-perl libwebp7 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 libyaml-0-2 littler m4 man-db media-types node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data pkg-config pkgconf pkgconf-bin po-debconf python3 python3-minimal python3.11 python3.11-minimal r-base-core r-base-dev r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh r-cran-bitops r-cran-bslib r-cran-cachem r-cran-catools r-cran-cli r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-colourpicker r-cran-commonmark r-cran-cowplot r-cran-cpp11 r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-data.table r-cran-deldir r-cran-digest r-cran-dotcall64 r-cran-dplyr r-cran-dqrng r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastdummies r-cran-fastmap r-cran-fitdistrplus r-cran-fnn r-cran-fontawesome r-cran-fs r-cran-future r-cran-future.apply r-cran-gdata r-cran-generics r-cran-ggplot2 r-cran-ggrepel r-cran-ggridges r-cran-globals r-cran-glue r-cran-goftest r-cran-gplots r-cran-gridextra r-cran-gtable r-cran-gtools r-cran-here r-cran-highr r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-ica r-cran-igraph r-cran-irlba r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later r-cran-lattice r-cran-lazyeval r-cran-leiden r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-lmtest r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-miniui r-cran-munsell r-cran-nlme r-cran-openssl r-cran-parallelly r-cran-patchwork r-cran-pbapply r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plotly r-cran-plyr r-cran-png r-cran-polyclip r-cran-progressr r-cran-promises r-cran-purrr r-cran-r6 r-cran-rann r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppannoy r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rcpphnsw r-cran-rcppprogress r-cran-rcpptoml r-cran-reshape2 r-cran-reticulate r-cran-rlang r-cran-rmarkdown r-cran-rocr r-cran-rprojroot r-cran-rspectra r-cran-rtsne r-cran-sass r-cran-scales r-cran-scattermore r-cran-sctransform r-cran-seuratobject r-cran-shiny r-cran-shinyjs r-cran-sitmo r-cran-sourcetools r-cran-sp r-cran-spam r-cran-spatstat.data r-cran-spatstat.explore r-cran-spatstat.geom r-cran-spatstat.random r-cran-spatstat.sparse r-cran-spatstat.utils r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-tensor r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-uwot r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml r-cran-zoo sbuild-build-depends-main-dummy ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 359 newly installed, 0 to remove and 0 not upgraded. Need to get 273 MB of archives. After this operation, 978 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [996 B] Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 libpython3.11-minimal amd64 3.11.6-3 [839 kB] Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libexpat1 amd64 2.5.0-2 [85.2 kB] Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 python3.11-minimal amd64 3.11.6-3 [2196 kB] Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 python3-minimal amd64 3.11.4-5ubuntu1 [26.9 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 media-types all 10.1.0 [27.5 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libpython3.11-stdlib amd64 3.11.6-3 [1917 kB] Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 python3.11 amd64 3.11.6-3 [579 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libpython3-stdlib amd64 3.11.4-5ubuntu1 [9562 B] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 python3 amd64 3.11.4-5ubuntu1 [22.9 kB] Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 libbsd0 amd64 0.11.7-4 [41.4 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 libelf1 amd64 0.190-1 [57.0 kB] Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 libfribidi0 amd64 1.0.13-3 [26.1 kB] Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libglib2.0-0 amd64 2.78.1-4 [1526 kB] Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libicu72 amd64 72.1-3ubuntu3 [10.8 MB] Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libxml2 amd64 2.9.14+dfsg-1.3build2 [767 kB] Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libyaml-0-2 amd64 0.2.5-1 [52.8 kB] Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 ucf all 3.0043+nmu1 [56.5 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 libmagic-mgc amd64 1:5.45-2 [307 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libmagic1 amd64 1:5.45-2 [86.1 kB] Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 file amd64 1:5.45-2 [21.9 kB] Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 gettext-base amd64 0.21-13build1 [38.3 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libuchardet0 amd64 0.0.7-1build2 [76.9 kB] Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 groff-base amd64 1.23.0-3 [1023 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses6 amd64 6.4+20231121-1build1 [111 kB] Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 libnghttp2-14 amd64 1.58.0-1 [73.2 kB] Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 libpipeline1 amd64 1.5.7-1 [23.3 kB] Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 libpsl5 amd64 0.21.2-1build1 [56.8 kB] Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libuv1 amd64 1.46.0-2 [96.0 kB] Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 libxau6 amd64 1:1.0.9-1build5 [7634 B] Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 libxdmcp6 amd64 1:1.1.3-0ubuntu5 [10.9 kB] Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb1 amd64 1.15-1 [48.0 kB] Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 libx11-data all 2:1.8.7-1 [115 kB] Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 libx11-6 amd64 2:1.8.7-1 [642 kB] Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 libxext6 amd64 2:1.3.4-1build1 [31.8 kB] Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 libxmuu1 amd64 2:1.1.3-3 [10.2 kB] Get:37 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 man-db amd64 2.12.0-1 [1229 kB] Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 xauth amd64 1:1.1.2-1 [25.8 kB] Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 m4 amd64 1.4.19-4 [243 kB] Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 autoconf all 2.71-3 [339 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 autotools-dev all 20220109.1 [44.9 kB] Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 automake all 1:1.16.5-1.3 [558 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 autopoint all 0.21-13build1 [422 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libdebhelper-perl all 13.11.8ubuntu1 [85.9 kB] Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libtool all 2.4.7-7 [166 kB] Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 dh-autoreconf all 20 [16.1 kB] Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 libsub-override-perl all 0.09-4 [8706 B] Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB] Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 dh-strip-nondeterminism all 1.13.1-1 [5362 B] Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 libdw1 amd64 0.190-1 [260 kB] Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 debugedit amd64 1:5.0-5 [46.1 kB] Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 dwz amd64 0.15-1 [112 kB] Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 gettext amd64 0.21-13build1 [865 kB] Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 debhelper all 13.11.8ubuntu1 [940 kB] Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu1 [174 kB] Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.11.0-2build1 [237 kB] Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libbrotli1 amd64 1.1.0-2 [332 kB] Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libfreetype6 amd64 2.13.2+dfsg-1 [397 kB] Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-noto-mono all 20201225-2 [435 kB] Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-noto-core all 20201225-2 [13.3 MB] Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.14.2-4ubuntu1 [35.9 kB] Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.14.2-4ubuntu1 [136 kB] Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-4 [20.1 kB] Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-4 [53.3 kB] Get:78 http://ftpmaster.internal/ubuntu noble/main amd64 libldap2 amd64 2.6.6+dfsg-1~exp1ubuntu1 [193 kB] Get:79 http://ftpmaster.internal/ubuntu noble/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2build4 [58.2 kB] Get:80 http://ftpmaster.internal/ubuntu noble/main amd64 libssh-4 amd64 0.10.5-3ubuntu1 [187 kB] Get:81 http://ftpmaster.internal/ubuntu noble/main amd64 libcurl4 amd64 8.4.0-2ubuntu1 [335 kB] Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 13.2.0-7ubuntu1 [891 kB] Get:85 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.11.0-2build1 [2623 kB] Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.14.2-4ubuntu1 [180 kB] Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-1build2 [71.3 kB] Get:88 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.0.1-1 [456 kB] Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-1build1 [162 kB] Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-2 [19.9 kB] Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-1build1 [19.2 kB] Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-3 [228 kB] Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-3 [42.4 kB] Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-3 [29.2 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.18-1 [43.1 kB] Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-2ubuntu2 [185 kB] Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.3 [15.5 kB] Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.3 [230 kB] Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-1ubuntu1 [199 kB] Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.13-2 [776 kB] Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] Get:109 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1 [27.0 MB] Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-7ubuntu1 [941 kB] Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-7ubuntu1 [11.4 MB] Get:112 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 gfortran amd64 4:13.2.0-2ubuntu1 [1184 B] Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.11.0-2build1 [170 kB] Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.11.0-2build1 [5104 kB] Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20231121-1build1 [382 kB] Get:116 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libreadline-dev amd64 8.2-3 [167 kB] Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] Get:120 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4 [211 kB] Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4 [198 kB] Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4 [6746 B] Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4 [743 kB] Get:124 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.40-2 [264 kB] Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5build1 [32.5 kB] Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.1 [178 kB] Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 72.1-3ubuntu3 [211 kB] Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 72.1-3ubuntu3 [11.8 MB] Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] Get:133 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] Get:134 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1 [4334 B] Get:135 http://ftpmaster.internal/ubuntu noble/main amd64 libfile-which-perl all 1.27-2 [12.5 kB] Get:136 http://ftpmaster.internal/ubuntu noble/universe amd64 libswitch-perl all 2.17-3 [18.9 kB] Get:137 http://ftpmaster.internal/ubuntu noble/main amd64 libclone-perl amd64 0.46-1 [10.9 kB] Get:138 http://ftpmaster.internal/ubuntu noble/main amd64 libencode-locale-perl all 1.05-3 [11.6 kB] Get:139 http://ftpmaster.internal/ubuntu noble/main amd64 libtimedate-perl all 2.3300-2 [34.0 kB] Get:140 http://ftpmaster.internal/ubuntu noble/main amd64 libhttp-date-perl all 6.06-1 [10.2 kB] Get:141 http://ftpmaster.internal/ubuntu noble/main amd64 libio-html-perl all 1.004-3 [15.9 kB] Get:142 http://ftpmaster.internal/ubuntu noble/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.1 kB] Get:143 http://ftpmaster.internal/ubuntu noble/main amd64 liburi-perl all 5.21-1 [85.4 kB] Get:144 http://ftpmaster.internal/ubuntu noble/main amd64 libhttp-message-perl all 6.44-2ubuntu1 [78.0 kB] Get:145 http://ftpmaster.internal/ubuntu noble/main amd64 libparams-util-perl amd64 1.102-2 [21.5 kB] Get:146 http://ftpmaster.internal/ubuntu noble/main amd64 libsub-install-perl all 0.929-1 [9764 B] Get:147 http://ftpmaster.internal/ubuntu noble/main amd64 libdata-optlist-perl all 0.114-1 [9708 B] Get:148 http://ftpmaster.internal/ubuntu noble/main amd64 libb-hooks-op-check-perl amd64 0.22-2build1 [9600 B] Get:149 http://ftpmaster.internal/ubuntu noble/main amd64 libdynaloader-functions-perl all 0.003-3 [12.1 kB] Get:150 http://ftpmaster.internal/ubuntu noble/main amd64 libdevel-callchecker-perl amd64 0.008-2 [13.9 kB] Get:151 http://ftpmaster.internal/ubuntu noble/main amd64 libparams-classify-perl amd64 0.015-2build2 [20.7 kB] Get:152 http://ftpmaster.internal/ubuntu noble/main amd64 libmodule-runtime-perl all 0.016-2 [16.4 kB] Get:153 http://ftpmaster.internal/ubuntu noble/main amd64 libtry-tiny-perl all 0.31-2 [20.8 kB] Get:154 http://ftpmaster.internal/ubuntu noble/main amd64 libmodule-implementation-perl all 0.09-2 [12.0 kB] Get:155 http://ftpmaster.internal/ubuntu noble/main amd64 libpackage-stash-perl all 0.40-1 [19.5 kB] Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 libclass-load-perl all 0.25-2 [12.7 kB] Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 libclass-load-xs-perl amd64 0.10-2build1 [13.5 kB] Get:158 http://ftpmaster.internal/ubuntu noble/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [6718 B] Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 libdevel-globaldestruction-perl all 0.14-4 [6114 B] Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 libalgorithm-c3-perl all 0.11-2 [10.2 kB] Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 libclass-c3-perl all 0.35-2 [18.4 kB] Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 libmro-compat-perl all 0.15-2 [10.1 kB] Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 libdevel-overloadinfo-perl all 0.007-1 [7422 B] Get:164 http://ftpmaster.internal/ubuntu noble/main amd64 libdevel-stacktrace-perl all 2.0400-2 [22.2 kB] Get:165 http://ftpmaster.internal/ubuntu noble/main amd64 libsub-exporter-perl all 0.990-1 [49.0 kB] Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 libeval-closure-perl all 0.14-3 [10.1 kB] Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 libdist-checkconflicts-perl all 0.11-2 [9942 B] Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 libmodule-runtime-conflicts-perl all 0.003-2 [6956 B] Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 libpackage-deprecationmanager-perl all 0.18-1 [16.7 kB] Get:170 http://ftpmaster.internal/ubuntu noble/main amd64 libpackage-stash-xs-perl amd64 0.30-1build1 [19.0 kB] Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 libmoose-perl amd64 2.2206-1 [749 kB] Get:172 http://ftpmaster.internal/ubuntu noble/main amd64 libvariable-magic-perl amd64 0.63-1 [35.0 kB] Get:173 http://ftpmaster.internal/ubuntu noble/main amd64 libb-hooks-endofscope-perl all 0.26-1 [17.8 kB] Get:174 http://ftpmaster.internal/ubuntu noble/main amd64 libsub-identify-perl amd64 0.14-3 [9928 B] Get:175 http://ftpmaster.internal/ubuntu noble/main amd64 libsub-name-perl amd64 0.27-1 [11.0 kB] Get:176 http://ftpmaster.internal/ubuntu noble/main amd64 libnamespace-clean-perl all 0.27-2 [14.0 kB] Get:177 http://ftpmaster.internal/ubuntu noble/main amd64 libcurl3-gnutls amd64 8.4.0-2ubuntu1 [328 kB] Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 libwww-curl-perl amd64 4.17-10 [56.2 kB] Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 libwww-curl-simple-perl all 0.100191-3 [11.2 kB] Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 dh-r all 20230707ubuntu1 [39.1 kB] Get:181 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] Get:183 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] Get:184 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 libboost1.81-dev amd64 1.81.0-7build1 [10.5 MB] Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] Get:192 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 liblua5.3-0 amd64 5.3.6-2 [139 kB] Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.18-2 [92.7 kB] Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.18-2 [2470 B] Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] Get:205 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 2.17.1.1-3ubuntu1 [82.9 kB] Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 2.17.1.1-3ubuntu1 [23.2 MB] Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB] Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bh all 1.81.0-1 [5814 B] Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.2-1 [1661 kB] Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.33-1 [185 kB] Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.7+dfsg-1 [442 kB] Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.1-1 [1319 kB] Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.6.2-1 [148 kB] Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] Get:229 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.7+dfsg-1 [1006 kB] Get:231 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 r-cran-bslib all 0.6.0+dfsg-1 [4895 kB] Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-catools amd64 1.18.2-1 [201 kB] Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cluster amd64 2.1.4-1 [552 kB] Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1541 kB] Get:236 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mass amd64 7.3-60-2 [1119 kB] Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-nlme amd64 3.1.163-1 [2265 kB] Get:241 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-3-1 [3824 kB] Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mgcv amd64 1.9-0-1 [3200 kB] Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-farver amd64 2.1.1-1 [1353 kB] Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-munsell all 0.5.0-2build1 [208 kB] Get:246 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] Get:248 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-scales all 1.2.1-1 [544 kB] Get:249 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] Get:250 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] Get:251 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] Get:252 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.4-1 [1334 kB] Get:253 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] Get:254 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] Get:255 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] Get:256 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] Get:257 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] Get:258 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] Get:259 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] Get:260 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] Get:261 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.7-1 [105 kB] Get:262 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] Get:263 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] Get:264 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] Get:265 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 r-cran-stringi amd64 1.8.2-1 [875 kB] Get:266 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] Get:267 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] Get:268 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] Get:269 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] Get:270 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.11-1 [1975 kB] Get:271 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.1+dfsg-1 [122 kB] Get:272 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] Get:273 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.12+dfsg-1 [512 kB] Get:274 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] Get:275 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] Get:276 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] Get:277 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.0-1 [130 kB] Get:278 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] Get:279 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] Get:280 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-1 [1480 kB] Get:281 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 r-cran-htmlwidgets all 1.6.3+dfsg-1 [123 kB] Get:282 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-miniui all 0.1.1.1-3build1 [36.1 kB] Get:283 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shinyjs all 2.1.0-1 [967 kB] Get:284 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-colourpicker all 1.3.0+dfsg-1 [1191 kB] Get:285 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cowplot all 1.1.1+dfsg-2 [613 kB] Get:286 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.6-1 [227 kB] Get:287 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] Get:288 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] Get:289 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.1.0+dfsg-1 [175 kB] Get:290 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 r-cran-data.table amd64 1.14.8+dfsg2-1 [1708 kB] Get:291 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 r-cran-deldir amd64 2.0-2-1 [270 kB] Get:292 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dotcall64 amd64 1.1-0-1 [35.3 kB] Get:293 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] Get:294 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB] Get:295 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB] Get:296 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sitmo amd64 2.0.2-1 [130 kB] Get:297 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dqrng amd64 0.3.1+dfsg-1 [139 kB] Get:298 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastdummies all 1.7.3-2 [49.9 kB] Get:299 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-survival amd64 3.5-7-1 [6103 kB] Get:300 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fitdistrplus all 1.1-11-1 [1902 kB] Get:301 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fnn amd64 1.1.3.2-1 [122 kB] Get:302 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-globals all 0.16.2-1 [117 kB] Get:303 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-listenv all 0.9.0+dfsg-1 [112 kB] Get:304 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-parallelly all 1.36.0-1 [357 kB] Get:305 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-future all 1.33.0+dfsg-1 [633 kB] Get:306 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-future.apply all 1.11.0+dfsg-1 [170 kB] Get:307 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gtools amd64 3.9.4-1 [335 kB] Get:308 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gdata all 3.0.0-1 [483 kB] Get:309 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggrepel amd64 0.9.4-1 [252 kB] Get:310 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ggridges all 0.5.4-2 [2175 kB] Get:311 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-goftest amd64 1.2-3-1 [59.5 kB] Get:312 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-kernsmooth amd64 2.23-22-1 [91.7 kB] Get:313 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gplots all 3.1.3-1 [588 kB] Get:314 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB] Get:315 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] Get:316 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-here all 1.0.1-2 [50.3 kB] Get:317 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB] Get:318 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] Get:319 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ica all 1.0-3-1 [85.4 kB] Get:320 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-igraph amd64 1.5.1-1 [4427 kB] Get:321 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-irlba amd64 2.3.5.1-2 [294 kB] Get:322 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpptoml amd64 0.2.2+dfsg-1 [110 kB] Get:323 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-png amd64 0.1-8-1 [40.5 kB] Get:324 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-reticulate amd64 1.34.0+dfsg-1 [1179 kB] Get:325 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-leiden all 0.4.3.1+dfsg-1 [71.9 kB] Get:326 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-zoo amd64 1.8-12-2 [984 kB] Get:327 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lmtest amd64 0.9.40-1 [396 kB] Get:328 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.1.0-1 [489 kB] Get:329 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-patchwork all 1.1.3-1 [3126 kB] Get:330 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pbapply all 1.7-2-1 [102 kB] Get:331 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] Get:332 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyr amd64 1.3.0-1 [1176 kB] Get:333 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plotly all 4.10.3+dfsg-1 [3368 kB] Get:334 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB] Get:335 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-polyclip amd64 1.10-6-1 [113 kB] Get:336 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-progressr all 0.14.0-1 [338 kB] Get:337 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rann amd64 2.6.1-1build2 [41.9 kB] Get:338 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcppannoy amd64 0.0.21-2 [235 kB] Get:339 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpparmadillo amd64 0.12.6.6.0-1 [864 kB] Get:340 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcppeigen amd64 0.3.3.9.4-1 [1189 kB] Get:341 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpphnsw amd64 0.5.0+ds-1 [171 kB] Get:342 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcppprogress all 0.4.2-2build1 [22.0 kB] Get:343 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-reshape2 amd64 1.4.4-2build1 [114 kB] Get:344 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rocr all 1.0-11-2build1 [446 kB] Get:345 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rspectra amd64 0.16-1-1 [413 kB] Get:346 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rtsne amd64 0.16-1 [106 kB] Get:347 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-scattermore amd64 1.2-1 [331 kB] Get:348 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sctransform amd64 0.4.1-1 [504 kB] Get:349 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sp amd64 1:2.1-1+dfsg-1 [1448 kB] Get:350 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spam amd64 2.10-0-1 [2765 kB] Get:351 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-seuratobject amd64 5.0.1-1 [1734 kB] Get:352 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat.utils amd64 3.0-4-1 [361 kB] Get:353 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat.data all 3.0-3-1 [4088 kB] Get:354 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat.geom amd64 3.2-7-1 [3823 kB] Get:355 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat.random amd64 3.2-1-1 [1141 kB] Get:356 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tensor all 1.5-4 [15.7 kB] Get:357 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat.sparse amd64 3.0-3-1 [215 kB] Get:358 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-spatstat.explore amd64 3.2-5-1 [3283 kB] Get:359 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-uwot amd64 0.1.16-2 [642 kB] Preconfiguring packages ... Fetched 273 MB in 3s (88.3 MB/s) Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... 13674 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.6-3_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.6-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-2_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-2) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.6-3_amd64.deb ... Unpacking python3.11-minimal (3.11.6-3) ... Setting up libpython3.11-minimal:amd64 (3.11.6-3) ... Setting up libexpat1:amd64 (2.5.0-2) ... Setting up python3.11-minimal (3.11.6-3) ... Selecting previously unselected package python3-minimal. (Reading database ... 13988 files and directories currently installed.) Preparing to unpack .../python3-minimal_3.11.4-5ubuntu1_amd64.deb ... Unpacking python3-minimal (3.11.4-5ubuntu1) ... Selecting previously unselected package media-types. Preparing to unpack .../media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../libpython3.11-stdlib_3.11.6-3_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.6-3) ... Selecting previously unselected package python3.11. Preparing to unpack .../python3.11_3.11.6-3_amd64.deb ... Unpacking python3.11 (3.11.6-3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../libpython3-stdlib_3.11.4-5ubuntu1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.4-5ubuntu1) ... Setting up python3-minimal (3.11.4-5ubuntu1) ... Selecting previously unselected package python3. (Reading database ... 14404 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.4-5ubuntu1_amd64.deb ... Unpacking python3 (3.11.4-5ubuntu1) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../001-libbsd0_0.11.7-4_amd64.deb ... Unpacking libbsd0:amd64 (0.11.7-4) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../002-libelf1_0.190-1_amd64.deb ... Unpacking libelf1:amd64 (0.190-1) ... Selecting previously unselected package libfribidi0:amd64. Preparing to unpack .../003-libfribidi0_1.0.13-3_amd64.deb ... Unpacking libfribidi0:amd64 (1.0.13-3) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../004-libglib2.0-0_2.78.1-4_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.78.1-4) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../005-libicu72_72.1-3ubuntu3_amd64.deb ... Unpacking libicu72:amd64 (72.1-3ubuntu3) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../006-libxml2_2.9.14+dfsg-1.3build2_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.3build2) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../007-libyaml-0-2_0.2.5-1_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.2.5-1) ... Selecting previously unselected package ucf. Preparing to unpack .../008-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../009-libmagic-mgc_1%3a5.45-2_amd64.deb ... Unpacking libmagic-mgc (1:5.45-2) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../010-libmagic1_1%3a5.45-2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.45-2) ... Selecting previously unselected package file. Preparing to unpack .../011-file_1%3a5.45-2_amd64.deb ... Unpacking file (1:5.45-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../012-gettext-base_0.21-13build1_amd64.deb ... Unpacking gettext-base (0.21-13build1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../013-libuchardet0_0.0.7-1build2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1build2) ... Selecting previously unselected package groff-base. Preparing to unpack .../014-groff-base_1.23.0-3_amd64.deb ... Unpacking groff-base (1.23.0-3) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../015-libncurses6_6.4+20231121-1build1_amd64.deb ... Unpacking libncurses6:amd64 (6.4+20231121-1build1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../016-libnghttp2-14_1.58.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.58.0-1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../017-libpipeline1_1.5.7-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../018-libpsl5_0.21.2-1build1_amd64.deb ... Unpacking libpsl5:amd64 (0.21.2-1build1) ... Selecting previously unselected package libuv1:amd64. Preparing to unpack .../019-libuv1_1.46.0-2_amd64.deb ... Unpacking libuv1:amd64 (1.46.0-2) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../020-libxau6_1%3a1.0.9-1build5_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.9-1build5) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../021-libxdmcp6_1%3a1.1.3-0ubuntu5_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.3-0ubuntu5) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../022-libxcb1_1.15-1_amd64.deb ... Unpacking libxcb1:amd64 (1.15-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../023-libx11-data_2%3a1.8.7-1_all.deb ... Unpacking libx11-data (2:1.8.7-1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../024-libx11-6_2%3a1.8.7-1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.8.7-1) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../025-libxext6_2%3a1.3.4-1build1_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.4-1build1) ... Selecting previously unselected package libxmuu1:amd64. Preparing to unpack .../026-libxmuu1_2%3a1.1.3-3_amd64.deb ... Unpacking libxmuu1:amd64 (2:1.1.3-3) ... Selecting previously unselected package man-db. Preparing to unpack .../027-man-db_2.12.0-1_amd64.deb ... Unpacking man-db (2.12.0-1) ... Selecting previously unselected package xauth. Preparing to unpack .../028-xauth_1%3a1.1.2-1_amd64.deb ... Unpacking xauth (1:1.1.2-1) ... Selecting previously unselected package m4. Preparing to unpack .../029-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../030-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../031-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../032-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../033-autopoint_0.21-13build1_all.deb ... Unpacking autopoint (0.21-13build1) ... Selecting previously unselected package dctrl-tools. Preparing to unpack .../034-dctrl-tools_2.24-3build2_amd64.deb ... Unpacking dctrl-tools (2.24-3build2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../035-libdebhelper-perl_13.11.8ubuntu1_all.deb ... Unpacking libdebhelper-perl (13.11.8ubuntu1) ... Selecting previously unselected package libtool. Preparing to unpack .../036-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../037-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../038-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../039-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../040-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../041-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libdw1:amd64. Preparing to unpack .../042-libdw1_0.190-1_amd64.deb ... Unpacking libdw1:amd64 (0.190-1) ... Selecting previously unselected package debugedit. Preparing to unpack .../043-debugedit_1%3a5.0-5_amd64.deb ... Unpacking debugedit (1:5.0-5) ... Selecting previously unselected package dwz. Preparing to unpack .../044-dwz_0.15-1_amd64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package gettext. Preparing to unpack .../045-gettext_0.21-13build1_amd64.deb ... Unpacking gettext (0.21-13build1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../046-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../047-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../048-debhelper_13.11.8ubuntu1_all.deb ... Unpacking debhelper (13.11.8ubuntu1) ... Selecting previously unselected package zip. Preparing to unpack .../049-zip_3.0-13_amd64.deb ... Unpacking zip (3.0-13) ... Selecting previously unselected package unzip. Preparing to unpack .../050-unzip_6.0-28ubuntu1_amd64.deb ... Unpacking unzip (6.0-28ubuntu1) ... Selecting previously unselected package libpaper1:amd64. Preparing to unpack .../051-libpaper1_1.1.29_amd64.deb ... Unpacking libpaper1:amd64 (1.1.29) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../052-libpaper-utils_1.1.29_amd64.deb ... Unpacking libpaper-utils (1.1.29) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../053-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../054-libblas3_3.11.0-2build1_amd64.deb ... Unpacking libblas3:amd64 (3.11.0-2build1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../055-libbrotli1_1.1.0-2_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../056-libfreetype6_2.13.2+dfsg-1_amd64.deb ... Unpacking libfreetype6:amd64 (2.13.2+dfsg-1) ... Selecting previously unselected package fonts-noto-mono. Preparing to unpack .../057-fonts-noto-mono_20201225-2_all.deb ... Unpacking fonts-noto-mono (20201225-2) ... Selecting previously unselected package fonts-noto-core. Preparing to unpack .../058-fonts-noto-core_20201225-2_all.deb ... Unpacking fonts-noto-core (20201225-2) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../059-fontconfig-config_2.14.2-4ubuntu1_amd64.deb ... Unpacking fontconfig-config (2.14.2-4ubuntu1) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../060-libfontconfig1_2.14.2-4ubuntu1_amd64.deb ... Unpacking libfontconfig1:amd64 (2.14.2-4ubuntu1) ... Selecting previously unselected package libpixman-1-0:amd64. Preparing to unpack .../061-libpixman-1-0_0.42.2-1_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.42.2-1) ... Selecting previously unselected package libxcb-render0:amd64. Preparing to unpack .../062-libxcb-render0_1.15-1_amd64.deb ... Unpacking libxcb-render0:amd64 (1.15-1) ... Selecting previously unselected package libxcb-shm0:amd64. Preparing to unpack .../063-libxcb-shm0_1.15-1_amd64.deb ... Unpacking libxcb-shm0:amd64 (1.15-1) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../064-libxrender1_1%3a0.9.10-1.1_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... Selecting previously unselected package libcairo2:amd64. Preparing to unpack .../065-libcairo2_1.18.0-1_amd64.deb ... Unpacking libcairo2:amd64 (1.18.0-1) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../066-libsasl2-modules-db_2.1.28+dfsg1-4_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-4) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../067-libsasl2-2_2.1.28+dfsg1-4_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-4) ... Selecting previously unselected package libldap2:amd64. Preparing to unpack .../068-libldap2_2.6.6+dfsg-1~exp1ubuntu1_amd64.deb ... Unpacking libldap2:amd64 (2.6.6+dfsg-1~exp1ubuntu1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../069-librtmp1_2.4+20151223.gitfa8646d.1-2build4_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2build4) ... Selecting previously unselected package libssh-4:amd64. Preparing to unpack .../070-libssh-4_0.10.5-3ubuntu1_amd64.deb ... Unpacking libssh-4:amd64 (0.10.5-3ubuntu1) ... Selecting previously unselected package libcurl4:amd64. Preparing to unpack .../071-libcurl4_8.4.0-2ubuntu1_amd64.deb ... Unpacking libcurl4:amd64 (8.4.0-2ubuntu1) ... Selecting previously unselected package libjpeg-turbo8:amd64. Preparing to unpack .../072-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ... Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... Selecting previously unselected package libjpeg8:amd64. Preparing to unpack .../073-libjpeg8_8c-2ubuntu11_amd64.deb ... Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../074-libgfortran5_13.2.0-7ubuntu1_amd64.deb ... Unpacking libgfortran5:amd64 (13.2.0-7ubuntu1) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../075-liblapack3_3.11.0-2build1_amd64.deb ... Unpacking liblapack3:amd64 (3.11.0-2build1) ... Selecting previously unselected package fontconfig. Preparing to unpack .../076-fontconfig_2.14.2-4ubuntu1_amd64.deb ... Unpacking fontconfig (2.14.2-4ubuntu1) ... Selecting previously unselected package libgraphite2-3:amd64. Preparing to unpack .../077-libgraphite2-3_1.3.14-1build2_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.14-1build2) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../078-libharfbuzz0b_8.0.1-1_amd64.deb ... Unpacking libharfbuzz0b:amd64 (8.0.1-1) ... Selecting previously unselected package libthai-data. Preparing to unpack .../079-libthai-data_0.1.29-1build1_all.deb ... Unpacking libthai-data (0.1.29-1build1) ... Selecting previously unselected package libdatrie1:amd64. Preparing to unpack .../080-libdatrie1_0.2.13-2_amd64.deb ... Unpacking libdatrie1:amd64 (0.2.13-2) ... Selecting previously unselected package libthai0:amd64. Preparing to unpack .../081-libthai0_0.1.29-1build1_amd64.deb ... Unpacking libthai0:amd64 (0.1.29-1build1) ... Selecting previously unselected package libpango-1.0-0:amd64. Preparing to unpack .../082-libpango-1.0-0_1.51.0+ds-3_amd64.deb ... Unpacking libpango-1.0-0:amd64 (1.51.0+ds-3) ... Selecting previously unselected package libpangoft2-1.0-0:amd64. Preparing to unpack .../083-libpangoft2-1.0-0_1.51.0+ds-3_amd64.deb ... Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-3) ... Selecting previously unselected package libpangocairo-1.0-0:amd64. Preparing to unpack .../084-libpangocairo-1.0-0_1.51.0+ds-3_amd64.deb ... Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-3) ... Selecting previously unselected package libtcl8.6:amd64. Preparing to unpack .../085-libtcl8.6_8.6.13+dfsg-2_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.13+dfsg-2) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../086-libdeflate0_1.18-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.18-1) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../087-libjbig0_2.1-6.1ubuntu1_amd64.deb ... Unpacking libjbig0:amd64 (2.1-6.1ubuntu1) ... Selecting previously unselected package liblerc4:amd64. Preparing to unpack .../088-liblerc4_4.0.0+ds-2ubuntu2_amd64.deb ... Unpacking liblerc4:amd64 (4.0.0+ds-2ubuntu2) ... Selecting previously unselected package libsharpyuv0:amd64. Preparing to unpack .../089-libsharpyuv0_1.3.2-0.3_amd64.deb ... Unpacking libsharpyuv0:amd64 (1.3.2-0.3) ... Selecting previously unselected package libwebp7:amd64. Preparing to unpack .../090-libwebp7_1.3.2-0.3_amd64.deb ... Unpacking libwebp7:amd64 (1.3.2-0.3) ... Selecting previously unselected package libtiff6:amd64. Preparing to unpack .../091-libtiff6_4.5.1+git230720-1ubuntu1_amd64.deb ... Unpacking libtiff6:amd64 (4.5.1+git230720-1ubuntu1) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../092-libxft2_2.3.6-1_amd64.deb ... Unpacking libxft2:amd64 (2.3.6-1) ... Selecting previously unselected package x11-common. Preparing to unpack .../093-x11-common_1%3a7.7+23ubuntu2_all.deb ... Unpacking x11-common (1:7.7+23ubuntu2) ... Selecting previously unselected package libxss1:amd64. Preparing to unpack .../094-libxss1_1%3a1.2.3-1build2_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.3-1build2) ... Selecting previously unselected package libtk8.6:amd64. Preparing to unpack .../095-libtk8.6_8.6.13-2_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.13-2) ... Selecting previously unselected package libice6:amd64. Preparing to unpack .../096-libice6_2%3a1.0.10-1build2_amd64.deb ... Unpacking libice6:amd64 (2:1.0.10-1build2) ... Selecting previously unselected package libsm6:amd64. Preparing to unpack .../097-libsm6_2%3a1.2.3-1build2_amd64.deb ... Unpacking libsm6:amd64 (2:1.2.3-1build2) ... Selecting previously unselected package libxt6:amd64. Preparing to unpack .../098-libxt6_1%3a1.2.1-1.1_amd64.deb ... Unpacking libxt6:amd64 (1:1.2.1-1.1) ... Selecting previously unselected package r-base-core. Preparing to unpack .../099-r-base-core_4.3.2-1_amd64.deb ... Unpacking r-base-core (4.3.2-1) ... Selecting previously unselected package libgfortran-13-dev:amd64. Preparing to unpack .../100-libgfortran-13-dev_13.2.0-7ubuntu1_amd64.deb ... Unpacking libgfortran-13-dev:amd64 (13.2.0-7ubuntu1) ... Selecting previously unselected package gfortran-13. Preparing to unpack .../101-gfortran-13_13.2.0-7ubuntu1_amd64.deb ... Unpacking gfortran-13 (13.2.0-7ubuntu1) ... Selecting previously unselected package gfortran. Preparing to unpack .../102-gfortran_4%3a13.2.0-2ubuntu1_amd64.deb ... Unpacking gfortran (4:13.2.0-2ubuntu1) ... Selecting previously unselected package libblas-dev:amd64. Preparing to unpack .../103-libblas-dev_3.11.0-2build1_amd64.deb ... Unpacking libblas-dev:amd64 (3.11.0-2build1) ... Selecting previously unselected package liblapack-dev:amd64. Preparing to unpack .../104-liblapack-dev_3.11.0-2build1_amd64.deb ... Unpacking liblapack-dev:amd64 (3.11.0-2build1) ... Selecting previously unselected package libncurses-dev:amd64. Preparing to unpack .../105-libncurses-dev_6.4+20231121-1build1_amd64.deb ... Unpacking libncurses-dev:amd64 (6.4+20231121-1build1) ... Selecting previously unselected package libreadline-dev:amd64. Preparing to unpack .../106-libreadline-dev_8.2-3_amd64.deb ... Unpacking libreadline-dev:amd64 (8.2-3) ... Selecting previously unselected package libjpeg-turbo8-dev:amd64. Preparing to unpack .../107-libjpeg-turbo8-dev_2.1.5-2ubuntu1_amd64.deb ... Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... Selecting previously unselected package libjpeg8-dev:amd64. Preparing to unpack .../108-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... Selecting previously unselected package libjpeg-dev:amd64. Preparing to unpack .../109-libjpeg-dev_8c-2ubuntu11_amd64.deb ... Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... Selecting previously unselected package libpcre2-16-0:amd64. Preparing to unpack .../110-libpcre2-16-0_10.42-4_amd64.deb ... Unpacking libpcre2-16-0:amd64 (10.42-4) ... Selecting previously unselected package libpcre2-32-0:amd64. Preparing to unpack .../111-libpcre2-32-0_10.42-4_amd64.deb ... Unpacking libpcre2-32-0:amd64 (10.42-4) ... Selecting previously unselected package libpcre2-posix3:amd64. Preparing to unpack .../112-libpcre2-posix3_10.42-4_amd64.deb ... Unpacking libpcre2-posix3:amd64 (10.42-4) ... Selecting previously unselected package libpcre2-dev:amd64. Preparing to unpack .../113-libpcre2-dev_10.42-4_amd64.deb ... Unpacking libpcre2-dev:amd64 (10.42-4) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../114-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... Selecting previously unselected package libpng-dev:amd64. Preparing to unpack .../115-libpng-dev_1.6.40-2_amd64.deb ... Unpacking libpng-dev:amd64 (1.6.40-2) ... Selecting previously unselected package libbz2-dev:amd64. Preparing to unpack .../116-libbz2-dev_1.0.8-5build1_amd64.deb ... Unpacking libbz2-dev:amd64 (1.0.8-5build1) ... Selecting previously unselected package liblzma-dev:amd64. Preparing to unpack .../117-liblzma-dev_5.4.5-0.1_amd64.deb ... Unpacking liblzma-dev:amd64 (5.4.5-0.1) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../118-icu-devtools_72.1-3ubuntu3_amd64.deb ... Unpacking icu-devtools (72.1-3ubuntu3) ... Selecting previously unselected package libicu-dev:amd64. Preparing to unpack .../119-libicu-dev_72.1-3ubuntu3_amd64.deb ... Unpacking libicu-dev:amd64 (72.1-3ubuntu3) ... Selecting previously unselected package libpkgconf3:amd64. Preparing to unpack .../120-libpkgconf3_1.8.1-2_amd64.deb ... Unpacking libpkgconf3:amd64 (1.8.1-2) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../121-pkgconf-bin_1.8.1-2_amd64.deb ... Unpacking pkgconf-bin (1.8.1-2) ... Selecting previously unselected package pkgconf:amd64. Preparing to unpack .../122-pkgconf_1.8.1-2_amd64.deb ... Unpacking pkgconf:amd64 (1.8.1-2) ... Selecting previously unselected package pkg-config:amd64. Preparing to unpack .../123-pkg-config_1.8.1-2_amd64.deb ... Unpacking pkg-config:amd64 (1.8.1-2) ... Selecting previously unselected package r-base-dev. Preparing to unpack .../124-r-base-dev_4.3.2-1_all.deb ... Unpacking r-base-dev (4.3.2-1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../125-libfile-which-perl_1.27-2_all.deb ... Unpacking libfile-which-perl (1.27-2) ... Selecting previously unselected package libswitch-perl. Preparing to unpack .../126-libswitch-perl_2.17-3_all.deb ... Unpacking libswitch-perl (2.17-3) ... Selecting previously unselected package libclone-perl:amd64. Preparing to unpack .../127-libclone-perl_0.46-1_amd64.deb ... Unpacking libclone-perl:amd64 (0.46-1) ... Selecting previously unselected package libencode-locale-perl. Preparing to unpack .../128-libencode-locale-perl_1.05-3_all.deb ... Unpacking libencode-locale-perl (1.05-3) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../129-libtimedate-perl_2.3300-2_all.deb ... Unpacking libtimedate-perl (2.3300-2) ... Selecting previously unselected package libhttp-date-perl. Preparing to unpack .../130-libhttp-date-perl_6.06-1_all.deb ... Unpacking libhttp-date-perl (6.06-1) ... Selecting previously unselected package libio-html-perl. Preparing to unpack .../131-libio-html-perl_1.004-3_all.deb ... Unpacking libio-html-perl (1.004-3) ... Selecting previously unselected package liblwp-mediatypes-perl. Preparing to unpack .../132-liblwp-mediatypes-perl_6.04-2_all.deb ... Unpacking liblwp-mediatypes-perl (6.04-2) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../133-liburi-perl_5.21-1_all.deb ... Unpacking liburi-perl (5.21-1) ... Selecting previously unselected package libhttp-message-perl. Preparing to unpack .../134-libhttp-message-perl_6.44-2ubuntu1_all.deb ... Unpacking libhttp-message-perl (6.44-2ubuntu1) ... Selecting previously unselected package libparams-util-perl. Preparing to unpack .../135-libparams-util-perl_1.102-2_amd64.deb ... Unpacking libparams-util-perl (1.102-2) ... Selecting previously unselected package libsub-install-perl. Preparing to unpack .../136-libsub-install-perl_0.929-1_all.deb ... Unpacking libsub-install-perl (0.929-1) ... Selecting previously unselected package libdata-optlist-perl. Preparing to unpack .../137-libdata-optlist-perl_0.114-1_all.deb ... Unpacking libdata-optlist-perl (0.114-1) ... Selecting previously unselected package libb-hooks-op-check-perl:amd64. Preparing to unpack .../138-libb-hooks-op-check-perl_0.22-2build1_amd64.deb ... Unpacking libb-hooks-op-check-perl:amd64 (0.22-2build1) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../139-libdynaloader-functions-perl_0.003-3_all.deb ... Unpacking libdynaloader-functions-perl (0.003-3) ... Selecting previously unselected package libdevel-callchecker-perl:amd64. Preparing to unpack .../140-libdevel-callchecker-perl_0.008-2_amd64.deb ... Unpacking libdevel-callchecker-perl:amd64 (0.008-2) ... Selecting previously unselected package libparams-classify-perl:amd64. Preparing to unpack .../141-libparams-classify-perl_0.015-2build2_amd64.deb ... Unpacking libparams-classify-perl:amd64 (0.015-2build2) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../142-libmodule-runtime-perl_0.016-2_all.deb ... Unpacking libmodule-runtime-perl (0.016-2) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../143-libtry-tiny-perl_0.31-2_all.deb ... Unpacking libtry-tiny-perl (0.31-2) ... Selecting previously unselected package libmodule-implementation-perl. Preparing to unpack .../144-libmodule-implementation-perl_0.09-2_all.deb ... Unpacking libmodule-implementation-perl (0.09-2) ... Selecting previously unselected package libpackage-stash-perl. Preparing to unpack .../145-libpackage-stash-perl_0.40-1_all.deb ... Unpacking libpackage-stash-perl (0.40-1) ... Selecting previously unselected package libclass-load-perl. Preparing to unpack .../146-libclass-load-perl_0.25-2_all.deb ... Unpacking libclass-load-perl (0.25-2) ... Selecting previously unselected package libclass-load-xs-perl. Preparing to unpack .../147-libclass-load-xs-perl_0.10-2build1_amd64.deb ... Unpacking libclass-load-xs-perl (0.10-2build1) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../148-libsub-exporter-progressive-perl_0.001013-3_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001013-3) ... Selecting previously unselected package libdevel-globaldestruction-perl. Preparing to unpack .../149-libdevel-globaldestruction-perl_0.14-4_all.deb ... Unpacking libdevel-globaldestruction-perl (0.14-4) ... Selecting previously unselected package libalgorithm-c3-perl. Preparing to unpack .../150-libalgorithm-c3-perl_0.11-2_all.deb ... Unpacking libalgorithm-c3-perl (0.11-2) ... Selecting previously unselected package libclass-c3-perl. Preparing to unpack .../151-libclass-c3-perl_0.35-2_all.deb ... Unpacking libclass-c3-perl (0.35-2) ... Selecting previously unselected package libmro-compat-perl. Preparing to unpack .../152-libmro-compat-perl_0.15-2_all.deb ... Unpacking libmro-compat-perl (0.15-2) ... Selecting previously unselected package libdevel-overloadinfo-perl. Preparing to unpack .../153-libdevel-overloadinfo-perl_0.007-1_all.deb ... Unpacking libdevel-overloadinfo-perl (0.007-1) ... Selecting previously unselected package libdevel-stacktrace-perl. Preparing to unpack .../154-libdevel-stacktrace-perl_2.0400-2_all.deb ... Unpacking libdevel-stacktrace-perl (2.0400-2) ... Selecting previously unselected package libsub-exporter-perl. Preparing to unpack .../155-libsub-exporter-perl_0.990-1_all.deb ... Unpacking libsub-exporter-perl (0.990-1) ... Selecting previously unselected package libeval-closure-perl. Preparing to unpack .../156-libeval-closure-perl_0.14-3_all.deb ... Unpacking libeval-closure-perl (0.14-3) ... Selecting previously unselected package libdist-checkconflicts-perl. Preparing to unpack .../157-libdist-checkconflicts-perl_0.11-2_all.deb ... Unpacking libdist-checkconflicts-perl (0.11-2) ... Selecting previously unselected package libmodule-runtime-conflicts-perl. Preparing to unpack .../158-libmodule-runtime-conflicts-perl_0.003-2_all.deb ... Unpacking libmodule-runtime-conflicts-perl (0.003-2) ... Selecting previously unselected package libpackage-deprecationmanager-perl. Preparing to unpack .../159-libpackage-deprecationmanager-perl_0.18-1_all.deb ... Unpacking libpackage-deprecationmanager-perl (0.18-1) ... Selecting previously unselected package libpackage-stash-xs-perl:amd64. Preparing to unpack .../160-libpackage-stash-xs-perl_0.30-1build1_amd64.deb ... Unpacking libpackage-stash-xs-perl:amd64 (0.30-1build1) ... Selecting previously unselected package libmoose-perl:amd64. Preparing to unpack .../161-libmoose-perl_2.2206-1_amd64.deb ... Unpacking libmoose-perl:amd64 (2.2206-1) ... Selecting previously unselected package libvariable-magic-perl. Preparing to unpack .../162-libvariable-magic-perl_0.63-1_amd64.deb ... Unpacking libvariable-magic-perl (0.63-1) ... Selecting previously unselected package libb-hooks-endofscope-perl. Preparing to unpack .../163-libb-hooks-endofscope-perl_0.26-1_all.deb ... Unpacking libb-hooks-endofscope-perl (0.26-1) ... Selecting previously unselected package libsub-identify-perl. Preparing to unpack .../164-libsub-identify-perl_0.14-3_amd64.deb ... Unpacking libsub-identify-perl (0.14-3) ... Selecting previously unselected package libsub-name-perl:amd64. Preparing to unpack .../165-libsub-name-perl_0.27-1_amd64.deb ... Unpacking libsub-name-perl:amd64 (0.27-1) ... Selecting previously unselected package libnamespace-clean-perl. Preparing to unpack .../166-libnamespace-clean-perl_0.27-2_all.deb ... Unpacking libnamespace-clean-perl (0.27-2) ... Selecting previously unselected package libcurl3-gnutls:amd64. Preparing to unpack .../167-libcurl3-gnutls_8.4.0-2ubuntu1_amd64.deb ... Unpacking libcurl3-gnutls:amd64 (8.4.0-2ubuntu1) ... Selecting previously unselected package libwww-curl-perl:amd64. Preparing to unpack .../168-libwww-curl-perl_4.17-10_amd64.deb ... Unpacking libwww-curl-perl:amd64 (4.17-10) ... Selecting previously unselected package libwww-curl-simple-perl. Preparing to unpack .../169-libwww-curl-simple-perl_0.100191-3_all.deb ... Unpacking libwww-curl-simple-perl (0.100191-3) ... Selecting previously unselected package dh-r. Preparing to unpack .../170-dh-r_20230707ubuntu1_all.deb ... Unpacking dh-r (20230707ubuntu1) ... Selecting previously unselected package fonts-font-awesome. Preparing to unpack .../171-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Selecting previously unselected package fonts-glyphicons-halflings. Preparing to unpack .../172-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... Selecting previously unselected package fonts-mathjax. Preparing to unpack .../173-fonts-mathjax_2.7.9+dfsg-1_all.deb ... Unpacking fonts-mathjax (2.7.9+dfsg-1) ... Selecting previously unselected package javascript-common. Preparing to unpack .../174-javascript-common_11+nmu1_all.deb ... Unpacking javascript-common (11+nmu1) ... Selecting previously unselected package libboost1.81-dev:amd64. Preparing to unpack .../175-libboost1.81-dev_1.81.0-7build1_amd64.deb ... Unpacking libboost1.81-dev:amd64 (1.81.0-7build1) ... Selecting previously unselected package libjs-bootstrap. Preparing to unpack .../176-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... Selecting previously unselected package libjs-popper.js. Preparing to unpack .../177-libjs-popper.js_1.16.1+ds-6_all.deb ... Unpacking libjs-popper.js (1.16.1+ds-6) ... Selecting previously unselected package libjs-bootstrap4. Preparing to unpack .../178-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... Selecting previously unselected package libjs-d3. Preparing to unpack .../179-libjs-d3_3.5.17-4_all.deb ... Unpacking libjs-d3 (3.5.17-4) ... Selecting previously unselected package libjs-es5-shim. Preparing to unpack .../180-libjs-es5-shim_4.6.7-2_all.deb ... Unpacking libjs-es5-shim (4.6.7-2) ... Selecting previously unselected package libjs-highlight.js. Preparing to unpack .../181-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../182-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-jquery-datatables. Preparing to unpack .../183-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... Selecting previously unselected package libjs-sifter.js. Preparing to unpack .../184-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... Selecting previously unselected package libjs-microplugin.js. Preparing to unpack .../185-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... Selecting previously unselected package libjs-jquery-selectize.js. Preparing to unpack .../186-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... Selecting previously unselected package libjs-jquery-ui. Preparing to unpack .../187-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... Selecting previously unselected package libjs-json. Preparing to unpack .../188-libjs-json_0~20221030+~1.0.8-1_all.deb ... Unpacking libjs-json (0~20221030+~1.0.8-1) ... Selecting previously unselected package libjs-prettify. Preparing to unpack .../189-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... Selecting previously unselected package liblua5.3-0:amd64. Preparing to unpack .../190-liblua5.3-0_5.3.6-2_amd64.deb ... Unpacking liblua5.3-0:amd64 (5.3.6-2) ... Selecting previously unselected package r-cran-littler. Preparing to unpack .../191-r-cran-littler_0.3.18-2_amd64.deb ... Unpacking r-cran-littler (0.3.18-2) ... Selecting previously unselected package littler. Preparing to unpack .../192-littler_0.3.18-2_all.deb ... Unpacking littler (0.3.18-2) ... Selecting previously unselected package node-bootstrap-sass. Preparing to unpack .../193-node-bootstrap-sass_3.4.3-2_all.deb ... Unpacking node-bootstrap-sass (3.4.3-2) ... Selecting previously unselected package node-html5shiv. Preparing to unpack .../194-node-html5shiv_3.7.3+dfsg-5_all.deb ... Unpacking node-html5shiv (3.7.3+dfsg-5) ... Selecting previously unselected package node-normalize.css. Preparing to unpack .../195-node-normalize.css_8.0.1-5_all.deb ... Unpacking node-normalize.css (8.0.1-5) ... Selecting previously unselected package pandoc-data. Preparing to unpack .../196-pandoc-data_2.17.1.1-3ubuntu1_all.deb ... Unpacking pandoc-data (2.17.1.1-3ubuntu1) ... Selecting previously unselected package pandoc. Preparing to unpack .../197-pandoc_2.17.1.1-3ubuntu1_amd64.deb ... Unpacking pandoc (2.17.1.1-3ubuntu1) ... Selecting previously unselected package r-cran-abind. Preparing to unpack .../198-r-cran-abind_1.4-5-2_all.deb ... Unpacking r-cran-abind (1.4-5-2) ... Selecting previously unselected package r-cran-sys. Preparing to unpack .../199-r-cran-sys_3.4.2-1_amd64.deb ... Unpacking r-cran-sys (3.4.2-1) ... Selecting previously unselected package r-cran-askpass. Preparing to unpack .../200-r-cran-askpass_1.2.0-1_amd64.deb ... Unpacking r-cran-askpass (1.2.0-1) ... Selecting previously unselected package r-cran-base64enc. Preparing to unpack .../201-r-cran-base64enc_0.1-3-3_amd64.deb ... Unpacking r-cran-base64enc (0.1-3-3) ... Selecting previously unselected package r-cran-bh. Preparing to unpack .../202-r-cran-bh_1.81.0-1_all.deb ... Unpacking r-cran-bh (1.81.0-1) ... Selecting previously unselected package r-cran-bitops. Preparing to unpack .../203-r-cran-bitops_1.0-7-1_amd64.deb ... Unpacking r-cran-bitops (1.0-7-1) ... Selecting previously unselected package r-cran-rlang. Preparing to unpack .../204-r-cran-rlang_1.1.2-1_amd64.deb ... Unpacking r-cran-rlang (1.1.2-1) ... Selecting previously unselected package r-cran-fastmap. Preparing to unpack .../205-r-cran-fastmap_1.1.1-1_amd64.deb ... Unpacking r-cran-fastmap (1.1.1-1) ... Selecting previously unselected package r-cran-cachem. Preparing to unpack .../206-r-cran-cachem_1.0.8-1_amd64.deb ... Unpacking r-cran-cachem (1.0.8-1) ... Selecting previously unselected package r-cran-digest. Preparing to unpack .../207-r-cran-digest_0.6.33-1_amd64.deb ... Unpacking r-cran-digest (0.6.33-1) ... Selecting previously unselected package r-cran-ellipsis. Preparing to unpack .../208-r-cran-ellipsis_0.3.2-2_amd64.deb ... Unpacking r-cran-ellipsis (0.3.2-2) ... Selecting previously unselected package r-cran-htmltools. Preparing to unpack .../209-r-cran-htmltools_0.5.7-1_amd64.deb ... Unpacking r-cran-htmltools (0.5.7-1) ... Selecting previously unselected package r-cran-jquerylib. Preparing to unpack .../210-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... Selecting previously unselected package r-cran-jsonlite. Preparing to unpack .../211-r-cran-jsonlite_1.8.7+dfsg-1_amd64.deb ... Unpacking r-cran-jsonlite (1.8.7+dfsg-1) ... Selecting previously unselected package r-cran-cli. Preparing to unpack .../212-r-cran-cli_3.6.1-1_amd64.deb ... Unpacking r-cran-cli (3.6.1-1) ... Selecting previously unselected package r-cran-glue. Preparing to unpack .../213-r-cran-glue_1.6.2-1_amd64.deb ... Unpacking r-cran-glue (1.6.2-1) ... Selecting previously unselected package r-cran-lifecycle. Preparing to unpack .../214-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... Selecting previously unselected package r-cran-memoise. Preparing to unpack .../215-r-cran-memoise_2.0.1-1_all.deb ... Unpacking r-cran-memoise (2.0.1-1) ... Selecting previously unselected package r-cran-mime. Preparing to unpack .../216-r-cran-mime_0.12-1_amd64.deb ... Unpacking r-cran-mime (0.12-1) ... Selecting previously unselected package r-cran-fs. Preparing to unpack .../217-r-cran-fs_1.6.3+dfsg-1_amd64.deb ... Unpacking r-cran-fs (1.6.3+dfsg-1) ... Selecting previously unselected package r-cran-r6. Preparing to unpack .../218-r-cran-r6_2.5.1-1_all.deb ... Unpacking r-cran-r6 (2.5.1-1) ... Selecting previously unselected package r-cran-rappdirs. Preparing to unpack .../219-r-cran-rappdirs_0.3.3-1_amd64.deb ... Unpacking r-cran-rappdirs (0.3.3-1) ... Selecting previously unselected package r-cran-sass. Preparing to unpack .../220-r-cran-sass_0.4.7+dfsg-1_amd64.deb ... Unpacking r-cran-sass (0.4.7+dfsg-1) ... Selecting previously unselected package r-cran-bslib. Preparing to unpack .../221-r-cran-bslib_0.6.0+dfsg-1_all.deb ... Unpacking r-cran-bslib (0.6.0+dfsg-1) ... Selecting previously unselected package r-cran-catools. Preparing to unpack .../222-r-cran-catools_1.18.2-1_amd64.deb ... Unpacking r-cran-catools (1.18.2-1) ... Selecting previously unselected package r-cran-cluster. Preparing to unpack .../223-r-cran-cluster_2.1.4-1_amd64.deb ... Unpacking r-cran-cluster (2.1.4-1) ... Selecting previously unselected package r-cran-codetools. Preparing to unpack .../224-r-cran-codetools_0.2-19-1_all.deb ... Unpacking r-cran-codetools (0.2-19-1) ... Selecting previously unselected package r-cran-colorspace. Preparing to unpack .../225-r-cran-colorspace_2.1-0+dfsg-1_amd64.deb ... Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... Selecting previously unselected package r-cran-gtable. Preparing to unpack .../226-r-cran-gtable_0.3.4+dfsg-1_all.deb ... Unpacking r-cran-gtable (0.3.4+dfsg-1) ... Selecting previously unselected package r-cran-isoband. Preparing to unpack .../227-r-cran-isoband_0.2.7-1_amd64.deb ... Unpacking r-cran-isoband (0.2.7-1) ... Selecting previously unselected package r-cran-mass. Preparing to unpack .../228-r-cran-mass_7.3-60-2_amd64.deb ... Unpacking r-cran-mass (7.3-60-2) ... Selecting previously unselected package r-cran-lattice. Preparing to unpack .../229-r-cran-lattice_0.22-5-1_amd64.deb ... Unpacking r-cran-lattice (0.22-5-1) ... Selecting previously unselected package r-cran-nlme. Preparing to unpack .../230-r-cran-nlme_3.1.163-1_amd64.deb ... Unpacking r-cran-nlme (3.1.163-1) ... Selecting previously unselected package r-cran-matrix. Preparing to unpack .../231-r-cran-matrix_1.6-3-1_amd64.deb ... Unpacking r-cran-matrix (1.6-3-1) ... Selecting previously unselected package r-cran-mgcv. Preparing to unpack .../232-r-cran-mgcv_1.9-0-1_amd64.deb ... Unpacking r-cran-mgcv (1.9-0-1) ... Selecting previously unselected package r-cran-farver. Preparing to unpack .../233-r-cran-farver_2.1.1-1_amd64.deb ... Unpacking r-cran-farver (2.1.1-1) ... Selecting previously unselected package r-cran-labeling. Preparing to unpack .../234-r-cran-labeling_0.4.3-1_all.deb ... Unpacking r-cran-labeling (0.4.3-1) ... Selecting previously unselected package r-cran-munsell. Preparing to unpack .../235-r-cran-munsell_0.5.0-2build1_all.deb ... Unpacking r-cran-munsell (0.5.0-2build1) ... Selecting previously unselected package r-cran-rcolorbrewer. Preparing to unpack .../236-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... Selecting previously unselected package r-cran-viridislite. Preparing to unpack .../237-r-cran-viridislite_0.4.2-2_all.deb ... Unpacking r-cran-viridislite (0.4.2-2) ... Selecting previously unselected package r-cran-scales. Preparing to unpack .../238-r-cran-scales_1.2.1-1_all.deb ... Unpacking r-cran-scales (1.2.1-1) ... Selecting previously unselected package r-cran-fansi. Preparing to unpack .../239-r-cran-fansi_1.0.5-1_amd64.deb ... Unpacking r-cran-fansi (1.0.5-1) ... Selecting previously unselected package r-cran-magrittr. Preparing to unpack .../240-r-cran-magrittr_2.0.3-1_amd64.deb ... Unpacking r-cran-magrittr (2.0.3-1) ... Selecting previously unselected package r-cran-utf8. Preparing to unpack .../241-r-cran-utf8_1.2.4-1_amd64.deb ... Unpacking r-cran-utf8 (1.2.4-1) ... Selecting previously unselected package r-cran-vctrs. Preparing to unpack .../242-r-cran-vctrs_0.6.4-1_amd64.deb ... Unpacking r-cran-vctrs (0.6.4-1) ... Selecting previously unselected package r-cran-pillar. Preparing to unpack .../243-r-cran-pillar_1.9.0+dfsg-1_all.deb ... Unpacking r-cran-pillar (1.9.0+dfsg-1) ... Selecting previously unselected package r-cran-pkgconfig. Preparing to unpack .../244-r-cran-pkgconfig_2.0.3-2build1_all.deb ... Unpacking r-cran-pkgconfig (2.0.3-2build1) ... Selecting previously unselected package r-cran-tibble. Preparing to unpack .../245-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... Unpacking r-cran-tibble (3.2.1+dfsg-2) ... Selecting previously unselected package r-cran-withr. Preparing to unpack .../246-r-cran-withr_2.5.0-1_all.deb ... Unpacking r-cran-withr (2.5.0-1) ... Selecting previously unselected package r-cran-ggplot2. Preparing to unpack .../247-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... Selecting previously unselected package r-cran-evaluate. Preparing to unpack .../248-r-cran-evaluate_0.23-1_all.deb ... Unpacking r-cran-evaluate (0.23-1) ... Selecting previously unselected package r-cran-xfun. Preparing to unpack .../249-r-cran-xfun_0.41+dfsg-1_amd64.deb ... Unpacking r-cran-xfun (0.41+dfsg-1) ... Selecting previously unselected package r-cran-highr. Preparing to unpack .../250-r-cran-highr_0.10+dfsg-1_all.deb ... Unpacking r-cran-highr (0.10+dfsg-1) ... Selecting previously unselected package r-cran-yaml. Preparing to unpack .../251-r-cran-yaml_2.3.7-1_amd64.deb ... Unpacking r-cran-yaml (2.3.7-1) ... Selecting previously unselected package libjs-mathjax. Preparing to unpack .../252-libjs-mathjax_2.7.9+dfsg-1_all.deb ... Unpacking libjs-mathjax (2.7.9+dfsg-1) ... Selecting previously unselected package r-cran-knitr. Preparing to unpack .../253-r-cran-knitr_1.45+dfsg-1_all.deb ... Unpacking r-cran-knitr (1.45+dfsg-1) ... Selecting previously unselected package r-cran-fontawesome. Preparing to unpack .../254-r-cran-fontawesome_0.5.2-1_all.deb ... Unpacking r-cran-fontawesome (0.5.2-1) ... Selecting previously unselected package r-cran-stringi. Preparing to unpack .../255-r-cran-stringi_1.8.2-1_amd64.deb ... Unpacking r-cran-stringi (1.8.2-1) ... Selecting previously unselected package r-cran-stringr. Preparing to unpack .../256-r-cran-stringr_1.5.1-1_all.deb ... Unpacking r-cran-stringr (1.5.1-1) ... Selecting previously unselected package r-cran-tinytex. Preparing to unpack .../257-r-cran-tinytex_0.49-1_all.deb ... Unpacking r-cran-tinytex (0.49-1) ... Selecting previously unselected package libjs-modernizr. Preparing to unpack .../258-libjs-modernizr_2.6.2+ds1-5_all.deb ... Unpacking libjs-modernizr (2.6.2+ds1-5) ... Selecting previously unselected package r-cran-pkgkitten. Preparing to unpack .../259-r-cran-pkgkitten_0.2.3-1_all.deb ... Unpacking r-cran-pkgkitten (0.2.3-1) ... Selecting previously unselected package r-cran-rcpp. Preparing to unpack .../260-r-cran-rcpp_1.0.11-1_amd64.deb ... Unpacking r-cran-rcpp (1.0.11-1) ... Selecting previously unselected package r-cran-later. Preparing to unpack .../261-r-cran-later_1.3.1+dfsg-1_amd64.deb ... Unpacking r-cran-later (1.3.1+dfsg-1) ... Selecting previously unselected package r-cran-promises. Preparing to unpack .../262-r-cran-promises_1.2.1+dfsg-1_amd64.deb ... Unpacking r-cran-promises (1.2.1+dfsg-1) ... Selecting previously unselected package r-cran-httpuv. Preparing to unpack .../263-r-cran-httpuv_1.6.12+dfsg-1_amd64.deb ... Unpacking r-cran-httpuv (1.6.12+dfsg-1) ... Selecting previously unselected package r-cran-xtable. Preparing to unpack .../264-r-cran-xtable_1%3a1.8-4-2_all.deb ... Unpacking r-cran-xtable (1:1.8-4-2) ... Selecting previously unselected package r-cran-sourcetools. Preparing to unpack .../265-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... Unpacking r-cran-sourcetools (0.1.7-1-1) ... Selecting previously unselected package r-cran-crayon. Preparing to unpack .../266-r-cran-crayon_1.5.2-1_all.deb ... Unpacking r-cran-crayon (1.5.2-1) ... Selecting previously unselected package r-cran-commonmark. Preparing to unpack .../267-r-cran-commonmark_1.9.0-1_amd64.deb ... Unpacking r-cran-commonmark (1.9.0-1) ... Selecting previously unselected package libjs-twitter-bootstrap-datepicker. Preparing to unpack .../268-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... Selecting previously unselected package r-cran-shiny. Preparing to unpack .../269-r-cran-shiny_1.8.0+dfsg-1_all.deb ... Unpacking r-cran-shiny (1.8.0+dfsg-1) ... Selecting previously unselected package r-cran-rmarkdown. Preparing to unpack .../270-r-cran-rmarkdown_2.25+dfsg-1_all.deb ... Unpacking r-cran-rmarkdown (2.25+dfsg-1) ... Selecting previously unselected package r-cran-htmlwidgets. Preparing to unpack .../271-r-cran-htmlwidgets_1.6.3+dfsg-1_all.deb ... Unpacking r-cran-htmlwidgets (1.6.3+dfsg-1) ... Selecting previously unselected package r-cran-miniui. Preparing to unpack .../272-r-cran-miniui_0.1.1.1-3build1_all.deb ... Unpacking r-cran-miniui (0.1.1.1-3build1) ... Selecting previously unselected package r-cran-shinyjs. Preparing to unpack .../273-r-cran-shinyjs_2.1.0-1_all.deb ... Unpacking r-cran-shinyjs (2.1.0-1) ... Selecting previously unselected package r-cran-colourpicker. Preparing to unpack .../274-r-cran-colourpicker_1.3.0+dfsg-1_all.deb ... Unpacking r-cran-colourpicker (1.3.0+dfsg-1) ... Selecting previously unselected package r-cran-cowplot. Preparing to unpack .../275-r-cran-cowplot_1.1.1+dfsg-2_all.deb ... Unpacking r-cran-cowplot (1.1.1+dfsg-2) ... Selecting previously unselected package r-cran-cpp11. Preparing to unpack .../276-r-cran-cpp11_0.4.6-1_all.deb ... Unpacking r-cran-cpp11 (0.4.6-1) ... Selecting previously unselected package r-cran-lazyeval. Preparing to unpack .../277-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... Unpacking r-cran-lazyeval (0.2.2-1build1) ... Selecting previously unselected package r-cran-crosstalk. Preparing to unpack .../278-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ... Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ... Selecting previously unselected package r-cran-curl. Preparing to unpack .../279-r-cran-curl_5.1.0+dfsg-1_amd64.deb ... Unpacking r-cran-curl (5.1.0+dfsg-1) ... Selecting previously unselected package r-cran-data.table. Preparing to unpack .../280-r-cran-data.table_1.14.8+dfsg2-1_amd64.deb ... Unpacking r-cran-data.table (1.14.8+dfsg2-1) ... Selecting previously unselected package r-cran-deldir. Preparing to unpack .../281-r-cran-deldir_2.0-2-1_amd64.deb ... Unpacking r-cran-deldir (2.0-2-1) ... Selecting previously unselected package r-cran-dotcall64. Preparing to unpack .../282-r-cran-dotcall64_1.1-0-1_amd64.deb ... Unpacking r-cran-dotcall64 (1.1-0-1) ... Selecting previously unselected package r-cran-generics. Preparing to unpack .../283-r-cran-generics_0.1.3-1_all.deb ... Unpacking r-cran-generics (0.1.3-1) ... Selecting previously unselected package r-cran-tidyselect. Preparing to unpack .../284-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ... Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... Selecting previously unselected package r-cran-dplyr. Preparing to unpack .../285-r-cran-dplyr_1.1.4-1_amd64.deb ... Unpacking r-cran-dplyr (1.1.4-1) ... Selecting previously unselected package r-cran-sitmo. Preparing to unpack .../286-r-cran-sitmo_2.0.2-1_amd64.deb ... Unpacking r-cran-sitmo (2.0.2-1) ... Selecting previously unselected package r-cran-dqrng. Preparing to unpack .../287-r-cran-dqrng_0.3.1+dfsg-1_amd64.deb ... Unpacking r-cran-dqrng (0.3.1+dfsg-1) ... Selecting previously unselected package r-cran-fastdummies. Preparing to unpack .../288-r-cran-fastdummies_1.7.3-2_all.deb ... Unpacking r-cran-fastdummies (1.7.3-2) ... Selecting previously unselected package r-cran-survival. Preparing to unpack .../289-r-cran-survival_3.5-7-1_amd64.deb ... Unpacking r-cran-survival (3.5-7-1) ... Selecting previously unselected package r-cran-fitdistrplus. Preparing to unpack .../290-r-cran-fitdistrplus_1.1-11-1_all.deb ... Unpacking r-cran-fitdistrplus (1.1-11-1) ... Selecting previously unselected package r-cran-fnn. Preparing to unpack .../291-r-cran-fnn_1.1.3.2-1_amd64.deb ... Unpacking r-cran-fnn (1.1.3.2-1) ... Selecting previously unselected package r-cran-globals. Preparing to unpack .../292-r-cran-globals_0.16.2-1_all.deb ... Unpacking r-cran-globals (0.16.2-1) ... Selecting previously unselected package r-cran-listenv. Preparing to unpack .../293-r-cran-listenv_0.9.0+dfsg-1_all.deb ... Unpacking r-cran-listenv (0.9.0+dfsg-1) ... Selecting previously unselected package r-cran-parallelly. Preparing to unpack .../294-r-cran-parallelly_1.36.0-1_all.deb ... Unpacking r-cran-parallelly (1.36.0-1) ... Selecting previously unselected package r-cran-future. Preparing to unpack .../295-r-cran-future_1.33.0+dfsg-1_all.deb ... Unpacking r-cran-future (1.33.0+dfsg-1) ... Selecting previously unselected package r-cran-future.apply. Preparing to unpack .../296-r-cran-future.apply_1.11.0+dfsg-1_all.deb ... Unpacking r-cran-future.apply (1.11.0+dfsg-1) ... Selecting previously unselected package r-cran-gtools. Preparing to unpack .../297-r-cran-gtools_3.9.4-1_amd64.deb ... Unpacking r-cran-gtools (3.9.4-1) ... Selecting previously unselected package r-cran-gdata. Preparing to unpack .../298-r-cran-gdata_3.0.0-1_all.deb ... Unpacking r-cran-gdata (3.0.0-1) ... Selecting previously unselected package r-cran-ggrepel. Preparing to unpack .../299-r-cran-ggrepel_0.9.4-1_amd64.deb ... Unpacking r-cran-ggrepel (0.9.4-1) ... Selecting previously unselected package r-cran-ggridges. Preparing to unpack .../300-r-cran-ggridges_0.5.4-2_all.deb ... Unpacking r-cran-ggridges (0.5.4-2) ... Selecting previously unselected package r-cran-goftest. Preparing to unpack .../301-r-cran-goftest_1.2-3-1_amd64.deb ... Unpacking r-cran-goftest (1.2-3-1) ... Selecting previously unselected package r-cran-kernsmooth. Preparing to unpack .../302-r-cran-kernsmooth_2.23-22-1_amd64.deb ... Unpacking r-cran-kernsmooth (2.23-22-1) ... Selecting previously unselected package r-cran-gplots. Preparing to unpack .../303-r-cran-gplots_3.1.3-1_all.deb ... Unpacking r-cran-gplots (3.1.3-1) ... Selecting previously unselected package r-cran-gridextra. Preparing to unpack .../304-r-cran-gridextra_2.3-3build1_all.deb ... Unpacking r-cran-gridextra (2.3-3build1) ... Selecting previously unselected package r-cran-rprojroot. Preparing to unpack .../305-r-cran-rprojroot_2.0.4-1_all.deb ... Unpacking r-cran-rprojroot (2.0.4-1) ... Selecting previously unselected package r-cran-here. Preparing to unpack .../306-r-cran-here_1.0.1-2_all.deb ... Unpacking r-cran-here (1.0.1-2) ... Selecting previously unselected package r-cran-openssl. Preparing to unpack .../307-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ... Unpacking r-cran-openssl (2.1.1+dfsg-2) ... Selecting previously unselected package r-cran-httr. Preparing to unpack .../308-r-cran-httr_1.4.7+dfsg-1_all.deb ... Unpacking r-cran-httr (1.4.7+dfsg-1) ... Selecting previously unselected package r-cran-ica. Preparing to unpack .../309-r-cran-ica_1.0-3-1_all.deb ... Unpacking r-cran-ica (1.0-3-1) ... Selecting previously unselected package r-cran-igraph. Preparing to unpack .../310-r-cran-igraph_1.5.1-1_amd64.deb ... Unpacking r-cran-igraph (1.5.1-1) ... Selecting previously unselected package r-cran-irlba. Preparing to unpack .../311-r-cran-irlba_2.3.5.1-2_amd64.deb ... Unpacking r-cran-irlba (2.3.5.1-2) ... Selecting previously unselected package r-cran-rcpptoml. Preparing to unpack .../312-r-cran-rcpptoml_0.2.2+dfsg-1_amd64.deb ... Unpacking r-cran-rcpptoml (0.2.2+dfsg-1) ... Selecting previously unselected package r-cran-png. Preparing to unpack .../313-r-cran-png_0.1-8-1_amd64.deb ... Unpacking r-cran-png (0.1-8-1) ... Selecting previously unselected package r-cran-reticulate. Preparing to unpack .../314-r-cran-reticulate_1.34.0+dfsg-1_amd64.deb ... Unpacking r-cran-reticulate (1.34.0+dfsg-1) ... Selecting previously unselected package r-cran-leiden. Preparing to unpack .../315-r-cran-leiden_0.4.3.1+dfsg-1_all.deb ... Unpacking r-cran-leiden (0.4.3.1+dfsg-1) ... Selecting previously unselected package r-cran-zoo. Preparing to unpack .../316-r-cran-zoo_1.8-12-2_amd64.deb ... Unpacking r-cran-zoo (1.8-12-2) ... Selecting previously unselected package r-cran-lmtest. Preparing to unpack .../317-r-cran-lmtest_0.9.40-1_amd64.deb ... Unpacking r-cran-lmtest (0.9.40-1) ... Selecting previously unselected package r-cran-matrixstats. Preparing to unpack .../318-r-cran-matrixstats_1.1.0-1_amd64.deb ... Unpacking r-cran-matrixstats (1.1.0-1) ... Selecting previously unselected package r-cran-patchwork. Preparing to unpack .../319-r-cran-patchwork_1.1.3-1_all.deb ... Unpacking r-cran-patchwork (1.1.3-1) ... Selecting previously unselected package r-cran-pbapply. Preparing to unpack .../320-r-cran-pbapply_1.7-2-1_all.deb ... Unpacking r-cran-pbapply (1.7-2-1) ... Selecting previously unselected package r-cran-purrr. Preparing to unpack .../321-r-cran-purrr_1.0.2-1_amd64.deb ... Unpacking r-cran-purrr (1.0.2-1) ... Selecting previously unselected package r-cran-tidyr. Preparing to unpack .../322-r-cran-tidyr_1.3.0-1_amd64.deb ... Unpacking r-cran-tidyr (1.3.0-1) ... Selecting previously unselected package r-cran-plotly. Preparing to unpack .../323-r-cran-plotly_4.10.3+dfsg-1_all.deb ... Unpacking r-cran-plotly (4.10.3+dfsg-1) ... Selecting previously unselected package r-cran-plyr. Preparing to unpack .../324-r-cran-plyr_1.8.9-1_amd64.deb ... Unpacking r-cran-plyr (1.8.9-1) ... Selecting previously unselected package r-cran-polyclip. Preparing to unpack .../325-r-cran-polyclip_1.10-6-1_amd64.deb ... Unpacking r-cran-polyclip (1.10-6-1) ... Selecting previously unselected package r-cran-progressr. Preparing to unpack .../326-r-cran-progressr_0.14.0-1_all.deb ... Unpacking r-cran-progressr (0.14.0-1) ... Selecting previously unselected package r-cran-rann. Preparing to unpack .../327-r-cran-rann_2.6.1-1build2_amd64.deb ... Unpacking r-cran-rann (2.6.1-1build2) ... Selecting previously unselected package r-cran-rcppannoy. Preparing to unpack .../328-r-cran-rcppannoy_0.0.21-2_amd64.deb ... Unpacking r-cran-rcppannoy (0.0.21-2) ... Selecting previously unselected package r-cran-rcpparmadillo. Preparing to unpack .../329-r-cran-rcpparmadillo_0.12.6.6.0-1_amd64.deb ... Unpacking r-cran-rcpparmadillo (0.12.6.6.0-1) ... Selecting previously unselected package r-cran-rcppeigen. Preparing to unpack .../330-r-cran-rcppeigen_0.3.3.9.4-1_amd64.deb ... Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... Selecting previously unselected package r-cran-rcpphnsw. Preparing to unpack .../331-r-cran-rcpphnsw_0.5.0+ds-1_amd64.deb ... Unpacking r-cran-rcpphnsw (0.5.0+ds-1) ... Selecting previously unselected package r-cran-rcppprogress. Preparing to unpack .../332-r-cran-rcppprogress_0.4.2-2build1_all.deb ... Unpacking r-cran-rcppprogress (0.4.2-2build1) ... Selecting previously unselected package r-cran-reshape2. Preparing to unpack .../333-r-cran-reshape2_1.4.4-2build1_amd64.deb ... Unpacking r-cran-reshape2 (1.4.4-2build1) ... Selecting previously unselected package r-cran-rocr. Preparing to unpack .../334-r-cran-rocr_1.0-11-2build1_all.deb ... Unpacking r-cran-rocr (1.0-11-2build1) ... Selecting previously unselected package r-cran-rspectra. Preparing to unpack .../335-r-cran-rspectra_0.16-1-1_amd64.deb ... Unpacking r-cran-rspectra (0.16-1-1) ... Selecting previously unselected package r-cran-rtsne. Preparing to unpack .../336-r-cran-rtsne_0.16-1_amd64.deb ... Unpacking r-cran-rtsne (0.16-1) ... Selecting previously unselected package r-cran-scattermore. Preparing to unpack .../337-r-cran-scattermore_1.2-1_amd64.deb ... Unpacking r-cran-scattermore (1.2-1) ... Selecting previously unselected package r-cran-sctransform. Preparing to unpack .../338-r-cran-sctransform_0.4.1-1_amd64.deb ... Unpacking r-cran-sctransform (0.4.1-1) ... Selecting previously unselected package r-cran-sp. Preparing to unpack .../339-r-cran-sp_1%3a2.1-1+dfsg-1_amd64.deb ... Unpacking r-cran-sp (1:2.1-1+dfsg-1) ... Selecting previously unselected package r-cran-spam. Preparing to unpack .../340-r-cran-spam_2.10-0-1_amd64.deb ... Unpacking r-cran-spam (2.10-0-1) ... Selecting previously unselected package r-cran-seuratobject. Preparing to unpack .../341-r-cran-seuratobject_5.0.1-1_amd64.deb ... Unpacking r-cran-seuratobject (5.0.1-1) ... Selecting previously unselected package r-cran-spatstat.utils. Preparing to unpack .../342-r-cran-spatstat.utils_3.0-4-1_amd64.deb ... Unpacking r-cran-spatstat.utils (3.0-4-1) ... Selecting previously unselected package r-cran-spatstat.data. Preparing to unpack .../343-r-cran-spatstat.data_3.0-3-1_all.deb ... Unpacking r-cran-spatstat.data (3.0-3-1) ... Selecting previously unselected package r-cran-spatstat.geom. Preparing to unpack .../344-r-cran-spatstat.geom_3.2-7-1_amd64.deb ... Unpacking r-cran-spatstat.geom (3.2-7-1) ... Selecting previously unselected package r-cran-spatstat.random. Preparing to unpack .../345-r-cran-spatstat.random_3.2-1-1_amd64.deb ... Unpacking r-cran-spatstat.random (3.2-1-1) ... Selecting previously unselected package r-cran-tensor. Preparing to unpack .../346-r-cran-tensor_1.5-4_all.deb ... Unpacking r-cran-tensor (1.5-4) ... Selecting previously unselected package r-cran-spatstat.sparse. Preparing to unpack .../347-r-cran-spatstat.sparse_3.0-3-1_amd64.deb ... Unpacking r-cran-spatstat.sparse (3.0-3-1) ... Selecting previously unselected package r-cran-spatstat.explore. Preparing to unpack .../348-r-cran-spatstat.explore_3.2-5-1_amd64.deb ... Unpacking r-cran-spatstat.explore (3.2-5-1) ... Selecting previously unselected package r-cran-uwot. Preparing to unpack .../349-r-cran-uwot_0.1.16-2_amd64.deb ... Unpacking r-cran-uwot (0.1.16-2) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../350-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:amd64 (1.5.7-1) ... Setting up libjs-json (0~20221030+~1.0.8-1) ... Setting up javascript-common (11+nmu1) ... Setting up libgraphite2-3:amd64 (1.3.14-1build2) ... Setting up libpixman-1-0:amd64 (0.42.2-1) ... Setting up libsharpyuv0:amd64 (1.3.2-0.3) ... Setting up libfile-which-perl (1.27-2) ... Setting up libxau6:amd64 (1:1.0.9-1build5) ... Setting up libpsl5:amd64 (0.21.2-1build1) ... Setting up fonts-mathjax (2.7.9+dfsg-1) ... Setting up libicu72:amd64 (72.1-3ubuntu3) ... Setting up liblerc4:amd64 (4.0.0+ds-2ubuntu2) ... Setting up fonts-noto-mono (20201225-2) ... Setting up libjs-mathjax (2.7.9+dfsg-1) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libdatrie1:amd64 (0.2.13-2) ... Setting up libjs-popper.js (1.16.1+ds-6) ... Setting up libmagic-mgc (1:5.45-2) ... Setting up libclone-perl:amd64 (0.46-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:amd64 (0.2.5-1) ... Setting up libsub-identify-perl (0.14-3) ... Setting up libglib2.0-0:amd64 (2.78.1-4) ... No schema files found: doing nothing. Setting up libjs-sifter.js (0.6.0+dfsg-3) ... Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... Setting up unzip (6.0-28ubuntu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.6-3) ... Setting up libdebhelper-perl (13.11.8ubuntu1) ... Setting up libbrotli1:amd64 (1.1.0-2) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up x11-common (1:7.7+23ubuntu2) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libtry-tiny-perl (0.31-2) ... Setting up node-html5shiv (3.7.3+dfsg-5) ... Setting up libnghttp2-14:amd64 (1.58.0-1) ... Setting up libmagic1:amd64 (1:5.45-2) ... Setting up libdeflate0:amd64 (1.18-1) ... Setting up gettext-base (0.21-13build1) ... Setting up m4 (1.4.19-4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... Setting up libboost1.81-dev:amd64 (1.81.0-7build1) ... Setting up file (1:5.45-2) ... Setting up libjs-modernizr (2.6.2+ds1-5) ... Setting up libjbig0:amd64 (2.1-6.1ubuntu1) ... Setting up libpcre2-16-0:amd64 (10.42-4) ... Setting up libsub-install-perl (0.929-1) ... Setting up libjs-es5-shim (4.6.7-2) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-4) ... Setting up zip (3.0-13) ... Setting up libpackage-stash-xs-perl:amd64 (0.30-1build1) ... Setting up autotools-dev (20220109.1) ... Setting up libpcre2-32-0:amd64 (10.42-4) ... Setting up libblas3:amd64 (3.11.0-2build1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libpkgconf3:amd64 (1.8.1-2) ... Setting up libuv1:amd64 (1.46.0-2) ... Setting up libalgorithm-c3-perl (0.11-2) ... Setting up libswitch-perl (2.17-3) ... Setting up libfreetype6:amd64 (2.13.2+dfsg-1) ... Setting up libx11-data (2:1.8.7-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2build4) ... Setting up libncurses6:amd64 (6.4+20231121-1build1) ... Setting up libfribidi0:amd64 (1.0.13-3) ... Setting up libjs-d3 (3.5.17-4) ... Setting up libvariable-magic-perl (0.63-1) ... Setting up libio-html-perl (1.004-3) ... Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ... Setting up autopoint (0.21-13build1) ... Setting up libb-hooks-op-check-perl:amd64 (0.22-2build1) ... Setting up icu-devtools (72.1-3ubuntu3) ... Setting up ucf (3.0043+nmu1) ... Setting up pkgconf-bin (1.8.1-2) ... Setting up libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... Setting up libparams-util-perl (1.102-2) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-4) ... Setting up libssh-4:amd64 (0.10.5-3ubuntu1) ... Setting up libgfortran5:amd64 (13.2.0-7ubuntu1) ... Setting up autoconf (2.71-3) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libwebp7:amd64 (1.3.2-0.3) ... Setting up libtimedate-perl (2.3300-2) ... Setting up liblzma-dev:amd64 (5.4.5-0.1) ... Setting up libsub-name-perl:amd64 (0.27-1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... Setting up libpcre2-posix3:amd64 (10.42-4) ... Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... Setting up libuchardet0:amd64 (0.0.7-1build2) ... Setting up liblua5.3-0:amd64 (5.3.6-2) ... Setting up libsub-override-perl (0.09-4) ... Setting up libharfbuzz0b:amd64 (8.0.1-1) ... Setting up libthai-data (0.1.29-1build1) ... Setting up libdevel-globaldestruction-perl (0.14-4) ... Setting up node-bootstrap-sass (3.4.3-2) ... Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... Setting up libdevel-stacktrace-perl (2.0400-2) ... Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... Setting up pandoc-data (2.17.1.1-3ubuntu1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libgfortran-13-dev:amd64 (13.2.0-7ubuntu1) ... Setting up libbsd0:amd64 (0.11.7-4) ... Setting up node-normalize.css (8.0.1-5) ... Setting up libelf1:amd64 (0.190-1) ... Setting up libicu-dev:amd64 (72.1-3ubuntu3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3build2) ... Setting up fonts-noto-core (20201225-2) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up xdg-utils (1.1.3-4.1ubuntu3) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libldap2:amd64 (2.6.6+dfsg-1~exp1ubuntu1) ... Setting up liburi-perl (5.21-1) ... Setting up libblas-dev:amd64 (3.11.0-2build1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up dctrl-tools (2.24-3build2) ... Setting up libjs-bootstrap (3.4.1+dfsg-3) ... Setting up libpython3-stdlib:amd64 (3.11.4-5ubuntu1) ... Setting up libbz2-dev:amd64 (1.0.8-5build1) ... Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... Setting up libjpeg8:amd64 (8c-2ubuntu11) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up r-cran-bh (1.81.0-1) ... Setting up libpaper1:amd64 (1.1.29) ... Creating config file /etc/papersize with new version Setting up python3.11 (3.11.6-3) ... Setting up libice6:amd64 (2:1.0.10-1build2) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libdw1:amd64 (0.190-1) ... Setting up libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... Setting up libxdmcp6:amd64 (1:1.1.3-0ubuntu5) ... Setting up liblapack3:amd64 (3.11.0-2build1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libncurses-dev:amd64 (6.4+20231121-1build1) ... Setting up libxcb1:amd64 (1.15-1) ... Setting up gettext (0.21-13build1) ... Setting up libpcre2-dev:amd64 (10.42-4) ... Setting up libtool (2.4.7-7) ... Setting up libxcb-render0:amd64 (1.15-1) ... Setting up fontconfig-config (2.14.2-4ubuntu1) ... Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... Setting up libpng-dev:amd64 (1.6.40-2) ... Setting up libcurl3-gnutls:amd64 (8.4.0-2ubuntu1) ... Setting up python3 (3.11.4-5ubuntu1) ... Setting up libxcb-shm0:amd64 (1.15-1) ... Setting up libpaper-utils (1.1.29) ... Setting up libclass-c3-perl (0.35-2) ... Setting up libreadline-dev:amd64 (8.2-3) ... Setting up libdevel-callchecker-perl:amd64 (0.008-2) ... Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... Setting up pkgconf:amd64 (1.8.1-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libthai0:amd64 (0.1.29-1build1) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up pandoc (2.17.1.1-3ubuntu1) ... Setting up gfortran-13 (13.2.0-7ubuntu1) ... Setting up liblapack-dev:amd64 (3.11.0-2build1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libdata-optlist-perl (0.114-1) ... Setting up pkg-config:amd64 (1.8.1-2) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up libtiff6:amd64 (4.5.1+git230720-1ubuntu1) ... Setting up debugedit (1:5.0-5) ... Setting up libcurl4:amd64 (8.4.0-2ubuntu1) ... Setting up libx11-6:amd64 (2:1.8.7-1) ... Setting up libfontconfig1:amd64 (2.14.2-4ubuntu1) ... Setting up libmro-compat-perl (0.15-2) ... Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ... Setting up libsm6:amd64 (2:1.2.3-1build2) ... Setting up libxmuu1:amd64 (2:1.1.3-3) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (6.44-2ubuntu1) ... Setting up libeval-closure-perl (0.14-3) ... Setting up fontconfig (2.14.2-4ubuntu1) ... Regenerating fonts cache... done. Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libparams-classify-perl:amd64 (0.015-2build2) ... Setting up libpango-1.0-0:amd64 (1.51.0+ds-3) ... Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ... Setting up libxext6:amd64 (2:1.3.4-1build1) ... Setting up libwww-curl-perl:amd64 (4.17-10) ... Setting up man-db (2.12.0-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up gfortran (4:13.2.0-2ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:amd64 (1.18.0-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up libxt6:amd64 (1:1.2.1-1.1) ... Setting up xauth (1:1.1.2-1) ... Setting up libxss1:amd64 (1:1.2.3-1build2) ... Setting up libpangoft2-1.0-0:amd64 (1.51.0+ds-3) ... Setting up libpangocairo-1.0-0:amd64 (1.51.0+ds-3) ... Setting up libxft2:amd64 (2.3.6-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libtk8.6:amd64 (8.6.13-2) ... Setting up debhelper (13.11.8ubuntu1) ... Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up libclass-load-perl (0.25-2) ... Setting up r-base-core (4.3.2-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.5.2-1) ... Setting up r-cran-labeling (0.4.3-1) ... Setting up r-cran-rcppprogress (0.4.2-2build1) ... Setting up r-cran-sourcetools (0.1.7-1-1) ... Setting up r-cran-lattice (0.22-5-1) ... Setting up r-cran-nlme (3.1.163-1) ... Setting up r-cran-farver (2.1.1-1) ... Setting up r-cran-pbapply (1.7-2-1) ... Setting up r-cran-spatstat.utils (3.0-4-1) ... Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up r-cran-viridislite (0.4.2-2) ... Setting up r-cran-cluster (2.1.4-1) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-2build1) ... Setting up r-cran-tensor (1.5-4) ... Setting up r-cran-lazyeval (0.2.2-1build1) ... Setting up r-cran-commonmark (1.9.0-1) ... Setting up r-cran-r6 (2.5.1-1) ... Setting up r-cran-pkgkitten (0.2.3-1) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up r-cran-magrittr (2.0.3-1) ... Setting up r-cran-rappdirs (0.3.3-1) ... Setting up r-cran-littler (0.3.18-2) ... Setting up r-cran-fs (1.6.3+dfsg-1) ... Setting up r-cran-rcpp (1.0.11-1) ... Setting up r-cran-curl (5.1.0+dfsg-1) ... Setting up r-cran-codetools (0.2-19-1) ... Setting up r-cran-rlang (1.1.2-1) ... Setting up r-cran-matrixstats (1.1.0-1) ... Setting up r-base-dev (4.3.2-1) ... Setting up r-cran-listenv (0.9.0+dfsg-1) ... Setting up littler (0.3.18-2) ... Setting up r-cran-xfun (0.41+dfsg-1) ... Setting up r-cran-rcpphnsw (0.5.0+ds-1) ... Setting up r-cran-sys (3.4.2-1) ... Setting up r-cran-withr (2.5.0-1) ... Setting up r-cran-mime (0.12-1) ... Setting up libmoose-perl:amd64 (2.2206-1) ... Setting up r-cran-generics (0.1.3-1) ... Setting up r-cran-base64enc (0.1-3-3) ... Setting up r-cran-abind (1.4-5-2) ... Setting up r-cran-digest (0.6.33-1) ... Setting up r-cran-yaml (2.3.7-1) ... Setting up r-cran-ica (1.0-3-1) ... Setting up r-cran-rann (2.6.1-1build2) ... Setting up r-cran-evaluate (0.23-1) ... Setting up r-cran-highr (0.10+dfsg-1) ... Setting up r-cran-fansi (1.0.5-1) ... Setting up r-cran-mass (7.3-60-2) ... Setting up r-cran-gtools (3.9.4-1) ... Setting up r-cran-data.table (1.14.8+dfsg2-1) ... Setting up r-cran-glue (1.6.2-1) ... Setting up r-cran-xtable (1:1.8-4-2) ... Setting up r-cran-polyclip (1.10-6-1) ... Setting up r-cran-cli (3.6.1-1) ... Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... Setting up r-cran-dotcall64 (1.1-0-1) ... Setting up r-cran-bitops (1.0-7-1) ... Setting up r-cran-rprojroot (2.0.4-1) ... Setting up r-cran-fnn (1.1.3.2-1) ... Setting up r-cran-progressr (0.14.0-1) ... Setting up r-cran-deldir (2.0-2-1) ... Setting up r-cran-goftest (1.2-3-1) ... Setting up r-cran-askpass (1.2.0-1) ... Setting up r-cran-fastmap (1.1.1-1) ... Setting up r-cran-png (0.1-8-1) ... Setting up r-cran-jsonlite (1.8.7+dfsg-1) ... Setting up r-cran-pkgconfig (2.0.3-2build1) ... Setting up r-cran-sp (1:2.1-1+dfsg-1) ... Setting up r-cran-utf8 (1.2.4-1) ... Setting up r-cran-colorspace (2.1-0+dfsg-1) ... Setting up r-cran-parallelly (1.36.0-1) ... Setting up r-cran-stringi (1.8.2-1) ... Setting up r-cran-cpp11 (0.4.6-1) ... Setting up r-cran-sitmo (2.0.2-1) ... Setting up r-cran-plyr (1.8.9-1) ... Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... Setting up r-cran-isoband (0.2.7-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-cran-gtable (0.3.4+dfsg-1) ... Setting up r-cran-zoo (1.8-12-2) ... Setting up r-cran-later (1.3.1+dfsg-1) ... Setting up r-cran-matrix (1.6-3-1) ... Setting up r-cran-spatstat.sparse (3.0-3-1) ... Setting up r-cran-here (1.0.1-2) ... Setting up r-cran-tinytex (0.49-1) ... Setting up r-cran-irlba (2.3.5.1-2) ... Setting up r-cran-kernsmooth (2.23-22-1) ... Setting up r-cran-knitr (1.45+dfsg-1) ... Setting up r-cran-rcpptoml (0.2.2+dfsg-1) ... Setting up r-cran-mgcv (1.9-0-1) ... Setting up r-cran-cachem (1.0.8-1) ... Setting up r-cran-lmtest (0.9.40-1) ... Setting up r-cran-catools (1.18.2-1) ... Setting up r-cran-rtsne (0.16-1) ... Setting up r-cran-rcpparmadillo (0.12.6.6.0-1) ... Setting up r-cran-dqrng (0.3.1+dfsg-1) ... Setting up r-cran-reticulate (1.34.0+dfsg-1) ... Setting up r-cran-globals (0.16.2-1) ... Setting up r-cran-spam (2.10-0-1) ... Setting up r-cran-gdata (3.0.0-1) ... Setting up r-cran-vctrs (0.6.4-1) ... Setting up r-cran-rcppeigen (0.3.3.9.4-1) ... Setting up r-cran-pillar (1.9.0+dfsg-1) ... Setting up r-cran-ellipsis (0.3.2-2) ... Setting up r-cran-rcppannoy (0.0.21-2) ... Setting up r-cran-openssl (2.1.1+dfsg-2) ... Setting up r-cran-stringr (1.5.1-1) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up r-cran-munsell (0.5.0-2build1) ... Setting up r-cran-tibble (3.2.1+dfsg-2) ... Setting up r-cran-survival (3.5-7-1) ... Setting up r-cran-igraph (1.5.1-1) ... Setting up r-cran-future (1.33.0+dfsg-1) ... Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... Setting up r-cran-reshape2 (1.4.4-2build1) ... Setting up r-cran-future.apply (1.11.0+dfsg-1) ... Setting up r-cran-httr (1.4.7+dfsg-1) ... Setting up r-cran-gridextra (2.3-3build1) ... Setting up r-cran-scales (1.2.1-1) ... Setting up r-cran-memoise (2.0.1-1) ... Setting up r-cran-promises (1.2.1+dfsg-1) ... Setting up r-cran-purrr (1.0.2-1) ... Setting up r-cran-spatstat.data (3.0-3-1) ... Setting up r-cran-fastdummies (1.7.3-2) ... Setting up r-cran-htmltools (0.5.7-1) ... Setting up r-cran-seuratobject (5.0.1-1) ... Setting up r-cran-spatstat.geom (3.2-7-1) ... Setting up r-cran-sass (0.4.7+dfsg-1) ... Setting up r-cran-dplyr (1.1.4-1) ... Setting up r-cran-rspectra (0.16-1-1) ... Setting up dh-r (20230707ubuntu1) ... Setting up r-cran-gplots (3.1.3-1) ... Setting up r-cran-uwot (0.1.16-2) ... Setting up r-cran-leiden (0.4.3.1+dfsg-1) ... Setting up r-cran-rocr (1.0-11-2build1) ... Setting up r-cran-fitdistrplus (1.1-11-1) ... Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... Setting up r-cran-scattermore (1.2-1) ... Setting up r-cran-httpuv (1.6.12+dfsg-1) ... Setting up r-cran-fontawesome (0.5.2-1) ... Setting up r-cran-spatstat.random (3.2-1-1) ... Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... Setting up r-cran-bslib (0.6.0+dfsg-1) ... Setting up r-cran-spatstat.explore (3.2-5-1) ... Setting up r-cran-ggrepel (0.9.4-1) ... Setting up r-cran-tidyr (1.3.0-1) ... Setting up r-cran-ggridges (0.5.4-2) ... Setting up r-cran-cowplot (1.1.1+dfsg-2) ... Setting up r-cran-sctransform (0.4.1-1) ... Setting up r-cran-patchwork (1.1.3-1) ... Setting up r-cran-shiny (1.8.0+dfsg-1) ... Setting up r-cran-shinyjs (2.1.0-1) ... Setting up r-cran-miniui (0.1.1.1-3build1) ... Setting up r-cran-rmarkdown (2.25+dfsg-1) ... Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... Setting up r-cran-htmlwidgets (1.6.3+dfsg-1) ... Setting up r-cran-colourpicker (1.3.0+dfsg-1) ... Setting up r-cran-plotly (4.10.3+dfsg-1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for systemd (253.5-1ubuntu7) ... Processing triggers for libc-bin (2.38-3ubuntu1) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-167-generic #184-Ubuntu SMP Tue Oct 31 09:21:49 UTC 2023 amd64 (x86_64) Toolchain package versions: binutils_2.41-7ubuntu1 dpkg-dev_1.22.1ubuntu3 g++-13_13.2.0-7ubuntu1 gcc-13_13.2.0-7ubuntu1 libc6-dev_2.38-3ubuntu1 libstdc++-13-dev_13.2.0-7ubuntu1 libstdc++6_13.2.0-7ubuntu1 linux-libc-dev_6.6.0-13.13 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 apt_2.7.7 apt-utils_2.7.7 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13build1 autotools-dev_20220109.1 base-files_13ubuntu5 base-passwd_3.6.2 bash_5.2.21-2ubuntu1 bash-completion_1:2.11-8 binutils_2.41-7ubuntu1 binutils-common_2.41-7ubuntu1 binutils-x86-64-linux-gnu_2.41-7ubuntu1 bsdextrautils_2.39.2-6ubuntu1 bsdutils_1:2.39.2-6ubuntu1 build-essential_12.10ubuntu1 bzip2_1.0.8-5build1 ca-certificates_20230311ubuntu1 coreutils_9.1-1ubuntu2 cpp_4:13.2.0-2ubuntu1 cpp-13_13.2.0-7ubuntu1 dash_0.5.12-6ubuntu1 dctrl-tools_2.24-3build2 debconf_1.5.82 debconf-i18n_1.5.82 debhelper_13.11.8ubuntu1 debianutils_5.14 debugedit_1:5.0-5 dh-autoreconf_20 dh-r_20230707ubuntu1 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.1ubuntu3 dpkg-dev_1.22.1ubuntu3 dwz_0.15-1 e2fsprogs_1.47.0-2ubuntu1 fakeroot_1.32.2-1 file_1:5.45-2 findutils_4.9.0-5 fontconfig_2.14.2-4ubuntu1 fontconfig-config_2.14.2-4ubuntu1 fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1 fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3 fonts-mathjax_2.7.9+dfsg-1 fonts-noto-core_20201225-2 fonts-noto-mono_20201225-2 g++_4:13.2.0-2ubuntu1 g++-13_13.2.0-7ubuntu1 gcc_4:13.2.0-2ubuntu1 gcc-13_13.2.0-7ubuntu1 gcc-13-base_13.2.0-7ubuntu1 gettext_0.21-13build1 gettext-base_0.21-13build1 gfortran_4:13.2.0-2ubuntu1 gfortran-13_13.2.0-7ubuntu1 gpg_2.2.40-1.1ubuntu1 gpg-agent_2.2.40-1.1ubuntu1 gpgconf_2.2.40-1.1ubuntu1 gpgv_2.2.40-1.1ubuntu1 grep_3.11-3 groff-base_1.23.0-3 gzip_1.12-1ubuntu1 hostname_3.23+nmu1ubuntu1 icu-devtools_72.1-3ubuntu3 init_1.65.2ubuntu1 init-system-helpers_1.65.2ubuntu1 intltool-debian_0.35.0+20060710.6 javascript-common_11+nmu1 krb5-locales_1.20.1-5build1 libacl1_2.3.1-3 libalgorithm-c3-perl_0.11-2 libapparmor1_4.0.0~alpha2-0ubuntu6 libapt-pkg6.0_2.7.7 libarchive-zip-perl_1.68-1 libargon2-1_0~20190702+dfsg-4 libasan8_13.2.0-7ubuntu1 libassuan0_2.5.6-1 libatomic1_13.2.0-7ubuntu1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.1-1build1 libaudit1_1:3.1.1-1build1 libb-hooks-endofscope-perl_0.26-1 libb-hooks-op-check-perl_0.22-2build1 libbinutils_2.41-7ubuntu1 libblas-dev_3.11.0-2build1 libblas3_3.11.0-2build1 libblkid1_2.39.2-6ubuntu1 libboost1.81-dev_1.81.0-7build1 libbrotli1_1.1.0-2 libbsd0_0.11.7-4 libbz2-1.0_1.0.8-5build1 libbz2-dev_1.0.8-5build1 libc-bin_2.38-3ubuntu1 libc-dev-bin_2.38-3ubuntu1 libc6_2.38-3ubuntu1 libc6-dev_2.38-3ubuntu1 libcairo2_1.18.0-1 libcap-ng0_0.8.3-1build3 libcap2_1:2.66-4ubuntu1 libcc1-0_13.2.0-7ubuntu1 libclass-c3-perl_0.35-2 libclass-load-perl_0.25-2 libclass-load-xs-perl_0.10-2build1 libclone-perl_0.46-1 libcom-err2_1.47.0-2ubuntu1 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libcryptsetup12_2:2.6.1-5ubuntu1 libctf-nobfd0_2.41-7ubuntu1 libctf0_2.41-7ubuntu1 libcurl3-gnutls_8.4.0-2ubuntu1 libcurl4_8.4.0-2ubuntu1 libdata-optlist-perl_0.114-1 libdatrie1_0.2.13-2 libdb5.3_5.3.28+dfsg2-4 libdebconfclient0_0.270ubuntu1 libdebhelper-perl_13.11.8ubuntu1 libdeflate0_1.18-1 libdevel-callchecker-perl_0.008-2 libdevel-globaldestruction-perl_0.14-4 libdevel-overloadinfo-perl_0.007-1 libdevel-stacktrace-perl_2.0400-2 libdevmapper1.02.1_2:1.02.185-2ubuntu1 libdist-checkconflicts-perl_0.11-2 libdpkg-perl_1.22.1ubuntu3 libdw1_0.190-1 libdynaloader-functions-perl_0.003-3 libelf1_0.190-1 libencode-locale-perl_1.05-3 libeval-closure-perl_0.14-3 libexpat1_2.5.0-2 libext2fs2_1.47.0-2ubuntu1 libfakeroot_1.32.2-1 libfdisk1_2.39.2-6ubuntu1 libffi8_3.4.4-2 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libfontconfig1_2.14.2-4ubuntu1 libfreetype6_2.13.2+dfsg-1 libfribidi0_1.0.13-3 libgcc-13-dev_13.2.0-7ubuntu1 libgcc-s1_13.2.0-7ubuntu1 libgcrypt20_1.10.2-3ubuntu1 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgfortran-13-dev_13.2.0-7ubuntu1 libgfortran5_13.2.0-7ubuntu1 libglib2.0-0_2.78.1-4 libgmp10_2:6.3.0+dfsg-2ubuntu4 libgnutls30_3.8.1-4ubuntu6 libgomp1_13.2.0-7ubuntu1 libgpg-error-l10n_1.47-3 libgpg-error0_1.47-3 libgpm2_1.20.7-10build1 libgprofng0_2.41-7ubuntu1 libgraphite2-3_1.3.14-1build2 libgssapi-krb5-2_1.20.1-5build1 libharfbuzz0b_8.0.1-1 libhogweed6_3.9.1-2 libhttp-date-perl_6.06-1 libhttp-message-perl_6.44-2ubuntu1 libhwasan0_13.2.0-7ubuntu1 libice6_2:1.0.10-1build2 libicu-dev_72.1-3ubuntu3 libicu72_72.1-3ubuntu3 libidn2-0_2.3.4-1build1 libio-html-perl_1.004-3 libip4tc2_1.8.9-2ubuntu2 libisl23_0.26-3 libitm1_13.2.0-7ubuntu1 libjansson4_2.14-2 libjbig0_2.1-6.1ubuntu1 libjpeg-dev_8c-2ubuntu11 libjpeg-turbo8_2.1.5-2ubuntu1 libjpeg-turbo8-dev_2.1.5-2ubuntu1 libjpeg8_8c-2ubuntu11 libjpeg8-dev_8c-2ubuntu11 libjs-bootstrap_3.4.1+dfsg-3 libjs-bootstrap4_4.6.1+dfsg1-4 libjs-d3_3.5.17-4 libjs-es5-shim_4.6.7-2 libjs-highlight.js_9.18.5+dfsg1-2 libjs-jquery_3.6.1+dfsg+~3.5.14-1 libjs-jquery-datatables_1.11.5+dfsg-2 libjs-jquery-selectize.js_0.12.6+dfsg-1.1 libjs-jquery-ui_1.13.2+dfsg-1 libjs-json_0~20221030+~1.0.8-1 libjs-mathjax_2.7.9+dfsg-1 libjs-microplugin.js_0.0.3+dfsg-1.1 libjs-modernizr_2.6.2+ds1-5 libjs-popper.js_1.16.1+ds-6 libjs-prettify_2015.12.04+dfsg-1.1 libjs-sifter.js_0.6.0+dfsg-3 libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1 libjson-c5_0.17-1 libk5crypto3_1.20.1-5build1 libkeyutils1_1.6.3-2 libkmod2_30+20230519-1ubuntu3 libkrb5-3_1.20.1-5build1 libkrb5support0_1.20.1-5build1 liblapack-dev_3.11.0-2build1 liblapack3_3.11.0-2build1 libldap2_2.6.6+dfsg-1~exp1ubuntu1 liblerc4_4.0.0+ds-2ubuntu2 liblocale-gettext-perl_1.07-6 liblockfile-bin_1.17-1build2 liblockfile1_1.17-1build2 liblsan0_13.2.0-7ubuntu1 liblua5.3-0_5.3.6-2 liblwp-mediatypes-perl_6.04-2 liblz4-1_1.9.4-1 liblzma-dev_5.4.5-0.1 liblzma5_5.4.5-0.1 libmagic-mgc_1:5.45-2 libmagic1_1:5.45-2 libmd0_1.1.0-1 libmodule-implementation-perl_0.09-2 libmodule-runtime-conflicts-perl_0.003-2 libmodule-runtime-perl_0.016-2 libmoose-perl_2.2206-1 libmount1_2.39.2-6ubuntu1 libmpc3_1.3.1-1 libmpfr6_4.2.1-1 libmro-compat-perl_0.15-2 libnamespace-clean-perl_0.27-2 libncurses-dev_6.4+20231121-1build1 libncurses6_6.4+20231121-1build1 libncursesw6_6.4+20231121-1build1 libnettle8_3.9.1-2 libnghttp2-14_1.58.0-1 libnpth0_1.6-3build2 libnsl-dev_1.3.0-3 libnsl2_1.3.0-3 libnss-nis_3.1-0ubuntu6 libnss-nisplus_1.3-0ubuntu6 libp11-kit0_0.25.0-4ubuntu1 libpackage-deprecationmanager-perl_0.18-1 libpackage-stash-perl_0.40-1 libpackage-stash-xs-perl_0.30-1build1 libpam-modules_1.5.2-9.1ubuntu1 libpam-modules-bin_1.5.2-9.1ubuntu1 libpam-runtime_1.5.2-9.1ubuntu1 libpam0g_1.5.2-9.1ubuntu1 libpango-1.0-0_1.51.0+ds-3 libpangocairo-1.0-0_1.51.0+ds-3 libpangoft2-1.0-0_1.51.0+ds-3 libpaper-utils_1.1.29 libpaper1_1.1.29 libparams-classify-perl_0.015-2build2 libparams-util-perl_1.102-2 libpcre2-16-0_10.42-4 libpcre2-32-0_10.42-4 libpcre2-8-0_10.42-4 libpcre2-dev_10.42-4 libpcre2-posix3_10.42-4 libperl5.36_5.36.0-10ubuntu1 libpipeline1_1.5.7-1 libpixman-1-0_0.42.2-1 libpkgconf3_1.8.1-2 libpng-dev_1.6.40-2 libpng16-16_1.6.40-2 libproc2-0_2:4.0.4-2ubuntu1 libpsl5_0.21.2-1build1 libpython3-stdlib_3.11.4-5ubuntu1 libpython3.11-minimal_3.11.6-3 libpython3.11-stdlib_3.11.6-3 libquadmath0_13.2.0-7ubuntu1 libreadline-dev_8.2-3 libreadline8_8.2-3 librtmp1_2.4+20151223.gitfa8646d.1-2build4 libsasl2-2_2.1.28+dfsg1-4 libsasl2-modules-db_2.1.28+dfsg1-4 libseccomp2_2.5.4-2ubuntu1 libselinux1_3.5-1build2 libsemanage-common_3.5-1build1 libsemanage2_3.5-1build1 libsepol2_3.5-2 libsframe1_2.41-7ubuntu1 libsharpyuv0_1.3.2-0.3 libsm6_2:1.2.3-1build2 libsmartcols1_2.39.2-6ubuntu1 libsqlite3-0_3.44.2-1 libss2_1.47.0-2ubuntu1 libssh-4_0.10.5-3ubuntu1 libssl3_3.0.10-1ubuntu3 libstdc++-13-dev_13.2.0-7ubuntu1 libstdc++6_13.2.0-7ubuntu1 libsub-exporter-perl_0.990-1 libsub-exporter-progressive-perl_0.001013-3 libsub-identify-perl_0.14-3 libsub-install-perl_0.929-1 libsub-name-perl_0.27-1 libsub-override-perl_0.09-4 libswitch-perl_2.17-3 libsystemd-shared_253.5-1ubuntu7 libsystemd0_253.5-1ubuntu7 libtasn1-6_4.19.0-3 libtcl8.6_8.6.13+dfsg-2 libtext-charwidth-perl_0.04-11 libtext-iconv-perl_1.7-8 libtext-wrapi18n-perl_0.06-10 libthai-data_0.1.29-1build1 libthai0_0.1.29-1build1 libtiff6_4.5.1+git230720-1ubuntu1 libtimedate-perl_2.3300-2 libtinfo6_6.4+20231121-1build1 libtirpc-common_1.3.4+ds-1 libtirpc-dev_1.3.4+ds-1 libtirpc3_1.3.4+ds-1 libtk8.6_8.6.13-2 libtool_2.4.7-7 libtry-tiny-perl_0.31-2 libtsan2_13.2.0-7ubuntu1 libubsan1_13.2.0-7ubuntu1 libuchardet0_0.0.7-1build2 libudev1_253.5-1ubuntu7 libunistring2_1.0-2 libunistring5_1.1-2 liburi-perl_5.21-1 libuuid1_2.39.2-6ubuntu1 libuv1_1.46.0-2 libvariable-magic-perl_0.63-1 libwebp7_1.3.2-0.3 libwww-curl-perl_4.17-10 libwww-curl-simple-perl_0.100191-3 libx11-6_2:1.8.7-1 libx11-data_2:1.8.7-1 libxau6_1:1.0.9-1build5 libxcb-render0_1.15-1 libxcb-shm0_1.15-1 libxcb1_1.15-1 libxdmcp6_1:1.1.3-0ubuntu5 libxext6_2:1.3.4-1build1 libxft2_2.3.6-1 libxml2_2.9.14+dfsg-1.3build2 libxmuu1_2:1.1.3-3 libxrender1_1:0.9.10-1.1 libxss1_1:1.2.3-1build2 libxt6_1:1.2.1-1.1 libxxhash0_0.8.2-2 libyaml-0-2_0.2.5-1 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.6.0-13.13 littler_0.3.18-2 lockfile-progs_0.1.19build1 login_1:4.13+dfsg1-1ubuntu1 logsave_1.47.0-2ubuntu1 lto-disabled-list_44 m4_1.4.19-4 make_4.3-4.1build1 man-db_2.12.0-1 mawk_1.3.4.20231102-1 media-types_10.1.0 mount_2.39.2-6ubuntu1 ncurses-base_6.4+20231121-1build1 ncurses-bin_6.4+20231121-1build1 node-bootstrap-sass_3.4.3-2 node-html5shiv_3.7.3+dfsg-5 node-normalize.css_8.0.1-5 openssl_3.0.10-1ubuntu3 optipng_0.7.7-3 pandoc_2.17.1.1-3ubuntu1 pandoc-data_2.17.1.1-3ubuntu1 passwd_1:4.13+dfsg1-1ubuntu1 patch_2.7.6-7build2 perl_5.36.0-10ubuntu1 perl-base_5.36.0-10ubuntu1 perl-modules-5.36_5.36.0-10ubuntu1 pinentry-curses_1.2.1-3ubuntu1 pkg-config_1.8.1-2 pkgbinarymangler_154 pkgconf_1.8.1-2 pkgconf-bin_1.8.1-2 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:4.0.4-2ubuntu1 psmisc_23.6-1 python3_3.11.4-5ubuntu1 python3-minimal_3.11.4-5ubuntu1 python3.11_3.11.6-3 python3.11-minimal_3.11.6-3 r-base-core_4.3.2-1 r-base-dev_4.3.2-1 r-cran-abind_1.4-5-2 r-cran-askpass_1.2.0-1 r-cran-base64enc_0.1-3-3 r-cran-bh_1.81.0-1 r-cran-bitops_1.0-7-1 r-cran-bslib_0.6.0+dfsg-1 r-cran-cachem_1.0.8-1 r-cran-catools_1.18.2-1 r-cran-cli_3.6.1-1 r-cran-cluster_2.1.4-1 r-cran-codetools_0.2-19-1 r-cran-colorspace_2.1-0+dfsg-1 r-cran-colourpicker_1.3.0+dfsg-1 r-cran-commonmark_1.9.0-1 r-cran-cowplot_1.1.1+dfsg-2 r-cran-cpp11_0.4.6-1 r-cran-crayon_1.5.2-1 r-cran-crosstalk_1.2.1+dfsg-1 r-cran-curl_5.1.0+dfsg-1 r-cran-data.table_1.14.8+dfsg2-1 r-cran-deldir_2.0-2-1 r-cran-digest_0.6.33-1 r-cran-dotcall64_1.1-0-1 r-cran-dplyr_1.1.4-1 r-cran-dqrng_0.3.1+dfsg-1 r-cran-ellipsis_0.3.2-2 r-cran-evaluate_0.23-1 r-cran-fansi_1.0.5-1 r-cran-farver_2.1.1-1 r-cran-fastdummies_1.7.3-2 r-cran-fastmap_1.1.1-1 r-cran-fitdistrplus_1.1-11-1 r-cran-fnn_1.1.3.2-1 r-cran-fontawesome_0.5.2-1 r-cran-fs_1.6.3+dfsg-1 r-cran-future_1.33.0+dfsg-1 r-cran-future.apply_1.11.0+dfsg-1 r-cran-gdata_3.0.0-1 r-cran-generics_0.1.3-1 r-cran-ggplot2_3.4.4+dfsg-1 r-cran-ggrepel_0.9.4-1 r-cran-ggridges_0.5.4-2 r-cran-globals_0.16.2-1 r-cran-glue_1.6.2-1 r-cran-goftest_1.2-3-1 r-cran-gplots_3.1.3-1 r-cran-gridextra_2.3-3build1 r-cran-gtable_0.3.4+dfsg-1 r-cran-gtools_3.9.4-1 r-cran-here_1.0.1-2 r-cran-highr_0.10+dfsg-1 r-cran-htmltools_0.5.7-1 r-cran-htmlwidgets_1.6.3+dfsg-1 r-cran-httpuv_1.6.12+dfsg-1 r-cran-httr_1.4.7+dfsg-1 r-cran-ica_1.0-3-1 r-cran-igraph_1.5.1-1 r-cran-irlba_2.3.5.1-2 r-cran-isoband_0.2.7-1 r-cran-jquerylib_0.1.4+dfsg-4 r-cran-jsonlite_1.8.7+dfsg-1 r-cran-kernsmooth_2.23-22-1 r-cran-knitr_1.45+dfsg-1 r-cran-labeling_0.4.3-1 r-cran-later_1.3.1+dfsg-1 r-cran-lattice_0.22-5-1 r-cran-lazyeval_0.2.2-1build1 r-cran-leiden_0.4.3.1+dfsg-1 r-cran-lifecycle_1.0.4+dfsg-1 r-cran-listenv_0.9.0+dfsg-1 r-cran-littler_0.3.18-2 r-cran-lmtest_0.9.40-1 r-cran-magrittr_2.0.3-1 r-cran-mass_7.3-60-2 r-cran-matrix_1.6-3-1 r-cran-matrixstats_1.1.0-1 r-cran-memoise_2.0.1-1 r-cran-mgcv_1.9-0-1 r-cran-mime_0.12-1 r-cran-miniui_0.1.1.1-3build1 r-cran-munsell_0.5.0-2build1 r-cran-nlme_3.1.163-1 r-cran-openssl_2.1.1+dfsg-2 r-cran-parallelly_1.36.0-1 r-cran-patchwork_1.1.3-1 r-cran-pbapply_1.7-2-1 r-cran-pillar_1.9.0+dfsg-1 r-cran-pkgconfig_2.0.3-2build1 r-cran-pkgkitten_0.2.3-1 r-cran-plotly_4.10.3+dfsg-1 r-cran-plyr_1.8.9-1 r-cran-png_0.1-8-1 r-cran-polyclip_1.10-6-1 r-cran-progressr_0.14.0-1 r-cran-promises_1.2.1+dfsg-1 r-cran-purrr_1.0.2-1 r-cran-r6_2.5.1-1 r-cran-rann_2.6.1-1build2 r-cran-rappdirs_0.3.3-1 r-cran-rcolorbrewer_1.1-3-1build1 r-cran-rcpp_1.0.11-1 r-cran-rcppannoy_0.0.21-2 r-cran-rcpparmadillo_0.12.6.6.0-1 r-cran-rcppeigen_0.3.3.9.4-1 r-cran-rcpphnsw_0.5.0+ds-1 r-cran-rcppprogress_0.4.2-2build1 r-cran-rcpptoml_0.2.2+dfsg-1 r-cran-reshape2_1.4.4-2build1 r-cran-reticulate_1.34.0+dfsg-1 r-cran-rlang_1.1.2-1 r-cran-rmarkdown_2.25+dfsg-1 r-cran-rocr_1.0-11-2build1 r-cran-rprojroot_2.0.4-1 r-cran-rspectra_0.16-1-1 r-cran-rtsne_0.16-1 r-cran-sass_0.4.7+dfsg-1 r-cran-scales_1.2.1-1 r-cran-scattermore_1.2-1 r-cran-sctransform_0.4.1-1 r-cran-seuratobject_5.0.1-1 r-cran-shiny_1.8.0+dfsg-1 r-cran-shinyjs_2.1.0-1 r-cran-sitmo_2.0.2-1 r-cran-sourcetools_0.1.7-1-1 r-cran-sp_1:2.1-1+dfsg-1 r-cran-spam_2.10-0-1 r-cran-spatstat.data_3.0-3-1 r-cran-spatstat.explore_3.2-5-1 r-cran-spatstat.geom_3.2-7-1 r-cran-spatstat.random_3.2-1-1 r-cran-spatstat.sparse_3.0-3-1 r-cran-spatstat.utils_3.0-4-1 r-cran-stringi_1.8.2-1 r-cran-stringr_1.5.1-1 r-cran-survival_3.5-7-1 r-cran-sys_3.4.2-1 r-cran-tensor_1.5-4 r-cran-tibble_3.2.1+dfsg-2 r-cran-tidyr_1.3.0-1 r-cran-tidyselect_1.2.0+dfsg-1 r-cran-tinytex_0.49-1 r-cran-utf8_1.2.4-1 r-cran-uwot_0.1.16-2 r-cran-vctrs_0.6.4-1 r-cran-viridislite_0.4.2-2 r-cran-withr_2.5.0-1 r-cran-xfun_0.41+dfsg-1 r-cran-xtable_1:1.8-4-2 r-cran-yaml_2.3.7-1 r-cran-zoo_1.8-12-2 readline-common_8.2-3 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 systemd_253.5-1ubuntu7 systemd-dev_253.5-1ubuntu7 systemd-sysv_253.5-1ubuntu7 sysvinit-utils_3.08-3ubuntu1 tar_1.34+dfsg-1.2ubuntu1 tzdata_2023c-9ubuntu1 ubuntu-keyring_2023.11.28.1 ucf_3.0043+nmu1 unzip_6.0-28ubuntu1 usrmerge_35ubuntu1 util-linux_2.39.2-6ubuntu1 uuid-runtime_2.39.2-6ubuntu1 x11-common_1:7.7+23ubuntu2 xauth_1:1.1.2-1 xdg-utils_1.1.3-4.1ubuntu3 xz-utils_5.4.5-0.1 zip_3.0-13 zlib1g_1:1.3.dfsg-3ubuntu1 zlib1g-dev_1:1.3.dfsg-3ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-cran-seurat Binary: r-cran-seurat Architecture: any Version: 5.0.1-1 Maintainer: Debian R Packages Maintainers Uploaders: Steffen Moeller Homepage: https://cran.r-project.org/package=Seurat Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-cran-seurat Vcs-Git: https://salsa.debian.org/r-pkg-team/r-cran-seurat.git Testsuite: autopkgtest, autopkgtest-pkg-r Testsuite-Triggers: r-bioc-biobase, r-bioc-biocgenerics, r-bioc-delayedarray, r-bioc-deseq2, r-bioc-genomeinfodb, r-bioc-genomicranges, r-bioc-iranges, r-bioc-limma, r-bioc-monocle, r-bioc-rtracklayer, r-bioc-s4vectors, r-bioc-singlecellexperiment, r-bioc-summarizedexperiment, r-cran-ape, r-cran-data.table, r-cran-ggrastr, r-cran-hdf5r, r-cran-metap, r-cran-mixtools, r-cran-r.utils, r-cran-rsvd, r-cran-testthat, r-cran-vgam Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-seuratobject (>= 5.0.1), r-cran-cluster, r-cran-cowplot, r-cran-fastdummies, r-cran-fitdistrplus, r-cran-future, r-cran-future.apply, r-cran-generics (>= 0.1.3), r-cran-ggplot2, r-cran-ggrepel, r-cran-ggridges, r-cran-httr, r-cran-ica, r-cran-igraph, r-cran-irlba, r-cran-jsonlite, r-cran-kernsmooth, r-cran-leiden, r-cran-lifecycle, r-cran-lmtest, r-cran-mass, r-cran-matrix (>= 1.5-0), r-cran-matrixstats, r-cran-miniui, r-cran-patchwork, r-cran-pbapply, r-cran-plotly, r-cran-png, r-cran-progressr, r-cran-purrr, r-cran-rann, r-cran-rcolorbrewer, r-cran-rcpp (>= 1.0.7), r-cran-rcppannoy, r-cran-rcpphnsw, r-cran-reticulate, r-cran-rlang, r-cran-rocr, r-cran-rspectra, r-cran-rtsne, r-cran-scales, r-cran-scattermore (>= 1.2), r-cran-sctransform (>= 0.4.1), r-cran-shiny, r-cran-spatstat.explore, r-cran-spatstat.geom, r-cran-tibble, r-cran-uwot, r-cran-rcppeigen, r-cran-rcppprogress Package-List: r-cran-seurat deb gnu-r optional arch=any Checksums-Sha1: 5f133f73fb736ba0fe3acc1b216f7183a680752b 2225638 r-cran-seurat_5.0.1.orig.tar.gz 27d2038cb380c1627c80806cc99d865c2cf6a818 4668 r-cran-seurat_5.0.1-1.debian.tar.xz Checksums-Sha256: 0713b434be5bf14fcea068fbfc632ba15bebdec1007f1f48effd0dbb95c5150d 2225638 r-cran-seurat_5.0.1.orig.tar.gz 69a4da1041dbfc55c006682539e691768a0a4e1787f8c4fbe80bcf2d56df4e09 4668 r-cran-seurat_5.0.1-1.debian.tar.xz Files: 3965b1ee0bdc7f005d250a3dd429bcc3 2225638 r-cran-seurat_5.0.1.orig.tar.gz d4908495d8f000bd561dc1b7cd56e1f3 4668 r-cran-seurat_5.0.1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmVgy1MRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFEzg/+IRh+/sJDBavoRsw8OAau7P6H+/dZFBC0 ewarZTY+wggwHwh4wqyeaqdsaay43a7VEcRaAq54a42gov73JtoInnjok1DxOtWD DeAbFn8neo3t8x1ipCVat7co6mQ08dej6hCIVS6iHoF9xY+n4rMNJ6bFC1noOmI7 fX5djWkv6RMHrwuTMHGe6FrjGxYu6SR0+8jvTzBO5aKfapzTzNEVR2HvA848SlYX 2s82czFPTtyVB9EpVCAZDoMWfcp1eBI6svnWfHPMBVInvTsGB1rmVm6ozo8j3Q37 3GiOAH7DUPFpMj74bGmrtCdBoCae/zMK1Gx/O1rmDBQy4AH0rPPKvHcb/wZi4Mse r2oBGbVFVXaKWA+EvC5OXAc0hQvrfn0HI2kWDr25g3VM0SBZ2eQcBHNzDGBLFkIm b63CdM4w2TfcKwbn8BVDRWBK8G053XewuoUQTBXVqvMSltmTaiKOXzsFpHrKRne+ NnfGWN2GiHD9B8Yk4M67MaipAeXKQDceh/8c7kZSAyTMGcriLRuAfcC9IbyuNgeo RSnyDM5rHQEOEVTh3pxNonrkrU/DodIrJjJl3TId+ldUbbPPPk4ksN8jbcqOQ3LC qOTw7Iut37qIXSOzbU6dyJdXEfQbUmuqPjMqCXGH+YH/VSRdGNeeLHkcFEBBvYO9 J0FxzqGCh54= =sVcX -----END PGP SIGNATURE----- gpgv: Signature made Fri Nov 24 16:12:03 2023 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-cran-seurat_5.0.1-1.dsc: no acceptable signature found dpkg-source: info: extracting r-cran-seurat in /<> dpkg-source: info: unpacking r-cran-seurat_5.0.1.orig.tar.gz dpkg-source: info: unpacking r-cran-seurat_5.0.1-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-27029617 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-27029617 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-27029617 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -b -rfakeroot dpkg-buildpackage: info: source package r-cran-seurat dpkg-buildpackage: info: source version 5.0.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-cran-seurat/ -O--buildsystem=R I: R packages needed for DEP8: ape, rsvd, testthat, hdf5r, s4vectors, summarizedexperiment, singlecellexperiment, deseq2, biocgenerics, genomicranges, genomeinfodb, iranges, rtracklayer, monocle, biobase, vgam, limma, metap, mixtools, ggrastr, data.table, r.utils, delayedarray I: R Package: Seurat Version: 5.0.1 I: Building using R version 4.3.2-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Fri, 24 Nov 2023 17:04:16 +0100 mkdir -p /<>/debian/r-cran-seurat/usr/lib/R/site-library R CMD INSTALL -l /<>/debian/r-cran-seurat/usr/lib/R/site-library --clean . "--built-timestamp='Fri, 24 Nov 2023 17:04:16 +0100'" * installing *source* package ‘Seurat’ ... ** package ‘Seurat’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc (Ubuntu 13.2.0-7ubuntu1) 13.2.0’ using C++ compiler: ‘g++ (Ubuntu 13.2.0-7ubuntu1) 13.2.0’ using C++17 make[1]: Entering directory '/<>/src' g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppProgress/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-ijJKKf/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/build/r-base-ijJKKf/r-base-4.3.2=/usr/src/r-base-4.3.2-1 -Wdate-time -D_FORTIFY_SOURCE=2 -c ModularityOptimizer.cpp -o ModularityOptimizer.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppProgress/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-ijJKKf/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/build/r-base-ijJKKf/r-base-4.3.2=/usr/src/r-base-4.3.2-1 -Wdate-time -D_FORTIFY_SOURCE=2 -c RModularityOptimizer.cpp -o RModularityOptimizer.o In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:397, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, from /usr/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:28, from /usr/lib/R/site-library/RcppEigen/include/RcppEigen.h:25, from RModularityOptimizer.cpp:9: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 60 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 61 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 62 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 161 | template<> struct unpacket_traits { typedef float type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 162 | template<> struct unpacket_traits { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 163 | template<> struct unpacket_traits { typedef int type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 718 | struct palign_impl | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 741 | struct palign_impl | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 764 | struct palign_impl | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 778 | ptranspose(PacketBlock& kernel) { | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 783 | ptranspose(PacketBlock& kernel) { | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 790 | ptranspose(PacketBlock& kernel) { | ^ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:377: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:370: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:439: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/SparseCore:37, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Sparse:26, from /usr/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:29: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ /usr/lib/R/site-library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/lib/R/site-library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) long long int>::half’ {aka ‘__m128i’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/lib/R/site-library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ /usr/lib/R/site-library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/lib/R/site-library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:29: required from ‘Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ RModularityOptimizer.cpp:65:37: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::Index = long int]’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, 0, Eigen::Stride<0, 0> > >; Scalar = int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:35: required from ‘Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ RModularityOptimizer.cpp:65:37: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 650 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppProgress/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-ijJKKf/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/build/r-base-ijJKKf/r-base-4.3.2=/usr/src/r-base-4.3.2-1 -Wdate-time -D_FORTIFY_SOURCE=2 -c RcppExports.cpp -o RcppExports.o In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:397, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, from /usr/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:28, from /usr/lib/R/site-library/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 60 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 61 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 62 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 161 | template<> struct unpacket_traits { typedef float type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 162 | template<> struct unpacket_traits { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 163 | template<> struct unpacket_traits { typedef int type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 718 | struct palign_impl | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 741 | struct palign_impl | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 764 | struct palign_impl | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 778 | ptranspose(PacketBlock& kernel) { | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 783 | ptranspose(PacketBlock& kernel) { | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 790 | ptranspose(PacketBlock& kernel) { | ^ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:377: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:370: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:439: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/SparseCore:37, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Sparse:26, from /usr/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:29: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ /usr/lib/R/site-library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/lib/R/site-library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) long long int>::half’ {aka ‘__m128i’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/lib/R/site-library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ /usr/lib/R/site-library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/lib/R/site-library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ RcppExports.cpp:71:105: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:18:8: required from ‘struct Eigen::internal::traits > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:48: required from ‘struct Eigen::internal::accessors_level > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:109:75: required from ‘class Eigen::Map >’ RcppExports.cpp:94:67: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:24:49: required from ‘struct Eigen::internal::traits > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:48: required from ‘struct Eigen::internal::accessors_level > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:109:75: required from ‘class Eigen::Map >’ RcppExports.cpp:94:67: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase >, 0>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34: required from ‘class Eigen::MapBase >, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map >’ RcppExports.cpp:94:67: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ RcppExports.cpp:169:45: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/RcppEigenWrap.h:110:39: required from ‘SEXPREC* Rcpp::RcppEigen::eigen_wrap(const T&) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:776:49: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::true_type) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*; Rcpp::traits::true_type = Rcpp::traits::integral_constant]’ /usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:787:39: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*; Rcpp::traits::false_type = Rcpp::traits::integral_constant]’ /usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:807:52: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap_end.h:30:38: required from ‘SEXPREC* Rcpp::wrap(const T&) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ RcppExports.cpp:43:33: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80: required from ‘struct Eigen::internal::evaluator > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1391:8: required from ‘struct Eigen::internal::evaluator >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:77:20: required from ‘void Eigen::internal::assign_sparse_to_sparse(DstXprType&, const SrcXprType&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:132:28: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix; Functor = Eigen::internal::assign_op; typename DstXprType::Scalar = double; typename SrcXprType::Scalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::SparseMatrix; Src = Eigen::SparseMatrix; Func = assign_op]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:842:27: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:709:13: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 0; _StorageIndex = int]’ /usr/lib/R/site-library/RcppEigen/include/RcppEigenWrap.h:387:24: required from ‘Eigen::SparseMatrix Rcpp::traits::Exporter >::get() [with T = double]’ /usr/lib/R/site-library/Rcpp/include/Rcpp/as.h:89:32: required from ‘T Rcpp::internal::as(SEXP, Rcpp::traits::r_type_generic_tag) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /usr/lib/R/site-library/Rcpp/include/Rcpp/as.h:152:31: required from ‘T Rcpp::as(SEXP) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /usr/lib/R/site-library/Rcpp/include/Rcpp/InputParameter.h:34:43: required from ‘Rcpp::InputParameter::operator T() [with T = Eigen::SparseMatrix]’ RcppExports.cpp:29:60: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80: required from ‘struct Eigen::internal::evaluator > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1391:8: required from ‘struct Eigen::internal::evaluator >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:77:20: required from ‘void Eigen::internal::assign_sparse_to_sparse(DstXprType&, const SrcXprType&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:132:28: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix; Functor = Eigen::internal::assign_op; typename DstXprType::Scalar = double; typename SrcXprType::Scalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::SparseMatrix; Src = Eigen::SparseMatrix; Func = assign_op]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:842:27: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:709:13: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>&) [with _Scalar = double; int _Options = 1; _StorageIndex = int]’ /usr/lib/R/site-library/RcppEigen/include/RcppEigenWrap.h:412:24: required from ‘Eigen::SparseMatrix<_Scalar, 1> Rcpp::traits::Exporter >::get() [with T = double]’ /usr/lib/R/site-library/Rcpp/include/Rcpp/as.h:89:32: required from ‘T Rcpp::internal::as(SEXP, Rcpp::traits::r_type_generic_tag) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /usr/lib/R/site-library/Rcpp/include/Rcpp/as.h:152:31: required from ‘T Rcpp::as(SEXP) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /usr/lib/R/site-library/Rcpp/include/Rcpp/InputParameter.h:34:43: required from ‘Rcpp::InputParameter::operator T() [with T = Eigen::SparseMatrix]’ RcppExports.cpp:71:50: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::Index = long int]’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, 0, Eigen::Stride<0, 0> > >; Scalar = int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:35: required from ‘Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ /usr/lib/R/site-library/RcppEigen/include/RcppEigenWrap.h:80:47: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/RcppEigenWrap.h:110:39: required from ‘SEXPREC* Rcpp::RcppEigen::eigen_wrap(const T&) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:776:49: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::true_type) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*; Rcpp::traits::true_type = Rcpp::traits::integral_constant]’ /usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:787:39: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*; Rcpp::traits::false_type = Rcpp::traits::integral_constant]’ /usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:807:52: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ /usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap_end.h:30:38: required from ‘SEXPREC* Rcpp::wrap(const T&) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]’ RcppExports.cpp:43:33: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 650 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppProgress/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-ijJKKf/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/build/r-base-ijJKKf/r-base-4.3.2=/usr/src/r-base-4.3.2-1 -Wdate-time -D_FORTIFY_SOURCE=2 -c data_manipulation.cpp -o data_manipulation.o In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:397, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, from /usr/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:28, from /usr/lib/R/site-library/RcppEigen/include/RcppEigen.h:25, from data_manipulation.cpp:1: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 60 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 61 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 62 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 161 | template<> struct unpacket_traits { typedef float type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 162 | template<> struct unpacket_traits { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 163 | template<> struct unpacket_traits { typedef int type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 718 | struct palign_impl | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 741 | struct palign_impl | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 764 | struct palign_impl | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 778 | ptranspose(PacketBlock& kernel) { | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 783 | ptranspose(PacketBlock& kernel) { | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 790 | ptranspose(PacketBlock& kernel) { | ^ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:377: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:370: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:439: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/SparseCore:37, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Sparse:26, from /usr/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:29: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ /usr/lib/R/site-library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/lib/R/site-library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) long long int>::half’ {aka ‘__m128i’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/lib/R/site-library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ /usr/lib/R/site-library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/lib/R/site-library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ data_manipulation.cpp:18:21: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ data_manipulation.cpp:18:21: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase > >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseTranspose.h:22:9: required from ‘class Eigen::internal::SparseTransposeImpl, 1024>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseTranspose.h:45:37: required from ‘class Eigen::TransposeImpl, Eigen::Sparse>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ data_manipulation.cpp:18:45: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ data_manipulation.cpp:18:71: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, Eigen::CwiseNullaryOp, Eigen::Matrix >, 0>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, Eigen::CwiseNullaryOp, Eigen::Matrix >, 0> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, Eigen::CwiseNullaryOp, Eigen::Matrix >, 0> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:115:7: required from ‘class Eigen::internal::dense_product_base >, Eigen::CwiseNullaryOp, Eigen::Matrix >, 0, 7>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7: required from ‘class Eigen::ProductImpl >, Eigen::CwiseNullaryOp, Eigen::Matrix >, 0, Eigen::Dense>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product >, Eigen::CwiseNullaryOp, Eigen::Matrix >, 0>’ data_manipulation.cpp:18:83: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ data_manipulation.cpp:75:127: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:24:49: required from ‘struct Eigen::internal::traits > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:48: required from ‘struct Eigen::internal::accessors_level > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:109:75: required from ‘class Eigen::Map >’ data_manipulation.cpp:131:88: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase >, 0>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34: required from ‘class Eigen::MapBase >, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map >’ data_manipulation.cpp:131:88: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from ‘class Eigen::Array’ data_manipulation.cpp:136:20: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, -1, 1, true>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase >, -1, 1, true>, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase >, -1, 1, true>, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, -1, 1, true> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, -1, 1, true> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase >, -1, 1, true>, 0>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34: required from ‘class Eigen::MapBase >, -1, 1, true>, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense >, -1, 1, true, true>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl >, -1, 1, true, Eigen::Dense>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block >, -1, 1, true>’ data_manipulation.cpp:136:31: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, -1, 1, true> >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase >, -1, 1, true> >, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase >, -1, 1, true> >, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, -1, 1, true> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase >, -1, 1, true> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper >, -1, 1, true> >’ data_manipulation.cpp:136:40: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, const Eigen::Array >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from ‘struct Eigen::internal::traits, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ data_manipulation.cpp:138:32: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ data_manipulation.cpp:138:32: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > >, Eigen::Dense>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ data_manipulation.cpp:138:47: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase, -1, 1, true> >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase, -1, 1, true> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:96:7: required from ‘class Eigen::internal::sparse_matrix_block_impl, -1, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:287:7: required from ‘class Eigen::BlockImpl, -1, 1, true, Eigen::Sparse>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, -1, 1, true>’ data_manipulation.cpp:186:50: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, true> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, true>, 0>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34: required from ‘class Eigen::MapBase, -1, 1, true>, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, true, true>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, -1, 1, true, Eigen::Dense>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, -1, 1, true>’ data_manipulation.cpp:187:19: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper >’ data_manipulation.cpp:187:35: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ data_manipulation.cpp:187:40: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >’ data_manipulation.cpp:187:51: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ data_manipulation.cpp:194:30: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::internal::member_mean, 0>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::internal::member_mean, 0> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::internal::member_mean, 0> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:56:7: required from ‘class Eigen::PartialReduxExpr, Eigen::internal::member_mean, 0>’ data_manipulation.cpp:229:45: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::internal::member_mean, 0>, -1, 1>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::internal::member_mean, 0>, -1, 1> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::internal::member_mean, 0>, -1, 1> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Replicate.h:61:65: required from ‘class Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from ‘struct Eigen::internal::traits, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1>, Eigen::Dense>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1> >’ data_manipulation.cpp:229:46: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1> >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1>, Eigen::Dense>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1> >’ data_manipulation.cpp:229:46: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from ‘class Eigen::DenseCoeffsBase >, 2>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ data_manipulation.cpp:231:37: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, Eigen::Matrix, 0>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, Eigen::Matrix, 0> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, Eigen::Matrix, 0> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:115:7: required from ‘class Eigen::internal::dense_product_base >, Eigen::Matrix, 0, 8>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7: required from ‘class Eigen::ProductImpl >, Eigen::Matrix, 0, Eigen::Dense>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product >, Eigen::Matrix, 0>’ data_manipulation.cpp:231:42: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, const Eigen::Matrix >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from ‘struct Eigen::internal::traits, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, Eigen::Dense>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >’ data_manipulation.cpp:231:70: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, Eigen::Dense>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >’ data_manipulation.cpp:231:70: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 1, -1, false>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase >, 1, -1, false>, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase >, 1, -1, false>, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, 1, -1, false> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, 1, -1, false> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase >, 1, -1, false>, 0>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34: required from ‘class Eigen::MapBase >, 1, -1, false>, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense >, 1, -1, false, true>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl >, 1, -1, false, Eigen::Dense>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block >, 1, -1, false>’ data_manipulation.cpp:368:29: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 1, -1, false> >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase >, 1, -1, false> >, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase >, 1, -1, false> >, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, 1, -1, false> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase >, 1, -1, false> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from ‘class Eigen::ArrayWrapper >, 1, -1, false> >’ data_manipulation.cpp:368:38: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:29: required from ‘Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ data_manipulation.cpp:95:36: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80: required from ‘struct Eigen::internal::evaluator > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1391:8: required from ‘struct Eigen::internal::evaluator >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseTranspose.h:58:63: required from ‘struct Eigen::internal::unary_evaluator >, Eigen::internal::IteratorBased, double>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1067:93: required from ‘Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Transpose >; _Scalar = double; int _Options = 0; _StorageIndex = int]’ data_manipulation.cpp:150:23: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1084:12: required from ‘Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Transpose >; _Scalar = double; int _Options = 0; _StorageIndex = int]’ data_manipulation.cpp:150:23: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, -1, -1, false>, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, -1, false> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, -1, false> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, -1, false>, 0>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34: required from ‘class Eigen::MapBase, -1, -1, false>, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, -1, false, true>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, -1, -1, false, Eigen::Dense>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, -1, -1, false>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CommaInitializer.h:95:21: required from ‘Eigen::CommaInitializer& Eigen::CommaInitializer::operator,(const Eigen::DenseBase&) [with OtherDerived = Eigen::Matrix; XprType = Eigen::Matrix]’ data_manipulation.cpp:249:17: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80: required from ‘struct Eigen::internal::evaluator > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1391:8: required from ‘struct Eigen::internal::evaluator >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1067:93: required from ‘Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::SparseMatrix; _Scalar = double; int _Options = 0; _StorageIndex = int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:949:7: required from ‘void Eigen::internal::set_from_triplets(const InputIterator&, const InputIterator&, SparseMatrixType&, DupFunctor) [with InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; SparseMatrixType = Eigen::SparseMatrix; DupFunctor = scalar_sum_op]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:996:92: required from ‘void Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::setFromTriplets(const InputIterators&, const InputIterators&) [with InputIterators = __gnu_cxx::__normal_iterator*, std::vector > >; _Scalar = double; int _Options = 0; _StorageIndex = int]’ data_manipulation.cpp:110:31: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:327:30: required from ‘Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Scalar = int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:501:10: required from ‘Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1084:73: required from ‘Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Transpose >; _Scalar = double; int _Options = 0; _StorageIndex = int]’ data_manipulation.cpp:150:23: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase, 0, Eigen::OuterStride<> > >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase, 0, Eigen::OuterStride<> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:50:7: required from ‘class Eigen::SparseMapBase, 0, Eigen::OuterStride<> >, 0>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseRef.h:83:34: required from ‘class Eigen::internal::SparseRefBase, 0, Eigen::OuterStride<> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseRef.h:177:7: required from ‘class Eigen::Ref, 0, Eigen::OuterStride<> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:128:88: required from ‘Eigen::internal::sparse_matrix_block_impl::BlockType& Eigen::internal::sparse_matrix_block_impl::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Block, -1, 1, true>; SparseMatrixType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; BlockType = Eigen::Block, -1, 1, true>]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:216:34: required from ‘Eigen::internal::sparse_matrix_block_impl::BlockType& Eigen::internal::sparse_matrix_block_impl::operator=(const BlockType&) [with SparseMatrixType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; BlockType = Eigen::Block, -1, 1, true>]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:111:5: required from ‘Eigen::Block& Eigen::Block::operator=(const Eigen::Block&) [with XprType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; bool InnerPanel = true]’ data_manipulation.cpp:409:42: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from ‘struct Eigen::internal::traits >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from ‘class Eigen::Array’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:70:30: required from ‘class Eigen::SparseMapBase, 0, Eigen::OuterStride<> >, 0>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseRef.h:83:34: required from ‘class Eigen::internal::SparseRefBase, 0, Eigen::OuterStride<> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseRef.h:177:7: required from ‘class Eigen::Ref, 0, Eigen::OuterStride<> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:128:88: required from ‘Eigen::internal::sparse_matrix_block_impl::BlockType& Eigen::internal::sparse_matrix_block_impl::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Block, -1, 1, true>; SparseMatrixType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; BlockType = Eigen::Block, -1, 1, true>]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:216:34: required from ‘Eigen::internal::sparse_matrix_block_impl::BlockType& Eigen::internal::sparse_matrix_block_impl::operator=(const BlockType&) [with SparseMatrixType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; BlockType = Eigen::Block, -1, 1, true>]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:111:5: required from ‘Eigen::Block& Eigen::Block::operator=(const Eigen::Block&) [with XprType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; bool InnerPanel = true]’ data_manipulation.cpp:409:42: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) long long int>::half’ {aka ‘__m128i’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseRef.h:83:34: required from ‘class Eigen::internal::SparseRefBase, 0, Eigen::OuterStride<> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseRef.h:177:7: required from ‘class Eigen::Ref, 0, Eigen::OuterStride<> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:128:88: required from ‘Eigen::internal::sparse_matrix_block_impl::BlockType& Eigen::internal::sparse_matrix_block_impl::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Block, -1, 1, true>; SparseMatrixType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; BlockType = Eigen::Block, -1, 1, true>]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:216:34: required from ‘Eigen::internal::sparse_matrix_block_impl::BlockType& Eigen::internal::sparse_matrix_block_impl::operator=(const BlockType&) [with SparseMatrixType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; BlockType = Eigen::Block, -1, 1, true>]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:111:5: required from ‘Eigen::Block& Eigen::Block::operator=(const Eigen::Block&) [with XprType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; bool InnerPanel = true]’ data_manipulation.cpp:409:42: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase, 0, Eigen::OuterStride<> >, -1, 1, true> >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:17:7: required from ‘class Eigen::BlockImpl, 0, Eigen::OuterStride<> >, -1, 1, true, Eigen::Sparse>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:194:85: required from ‘Eigen::internal::sparse_matrix_block_impl::BlockType& Eigen::internal::sparse_matrix_block_impl::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Block, -1, 1, true>; SparseMatrixType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; BlockType = Eigen::Block, -1, 1, true>]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:216:34: required from ‘Eigen::internal::sparse_matrix_block_impl::BlockType& Eigen::internal::sparse_matrix_block_impl::operator=(const BlockType&) [with SparseMatrixType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; BlockType = Eigen::Block, -1, 1, true>]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:111:5: required from ‘Eigen::Block& Eigen::Block::operator=(const Eigen::Block&) [with XprType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; bool InnerPanel = true]’ data_manipulation.cpp:409:42: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Array; Eigen::Index = long int]’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator >; Scalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Array; typename Eigen::internal::traits::Scalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:468:32: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::mean() const [with Derived = Eigen::Array; typename Eigen::internal::traits::Scalar = double]’ data_manipulation.cpp:137:28: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 650 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; Eigen::Index = long int]’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >; Scalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; typename Eigen::internal::traits::Scalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Array, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; typename Eigen::internal::traits::Scalar = double]’ data_manipulation.cpp:138:53: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from ‘class Eigen::ArrayBase > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:829:17: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array; Src = Eigen::ArrayWrapper >, 1, -1, false> >; Func = assign_op]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::ArrayWrapper >, 1, -1, false> >; Derived = Eigen::Array]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::ArrayWrapper >, 1, -1, false> >; Derived = Eigen::Array]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Array.h:242:29: required from ‘Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase&, typename Eigen::internal::enable_if >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::ArrayWrapper >, 1, -1, false> >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if >::Scalar>::value, PrivateType>::type = Eigen::Array::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits >::Scalar = double]’ data_manipulation.cpp:368:39: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> > > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseRef.h:364:8: required from ‘struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:45:21: required from ‘Eigen::Index Eigen::BlockImpl::nonZeros() const [with XprType = Eigen::Ref, 0, Eigen::OuterStride<> >; int BlockRows = -1; int BlockCols = 1; Eigen::Index = long int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:194:97: required from ‘Eigen::internal::sparse_matrix_block_impl::BlockType& Eigen::internal::sparse_matrix_block_impl::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Block, -1, 1, true>; SparseMatrixType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; BlockType = Eigen::Block, -1, 1, true>]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:216:34: required from ‘Eigen::internal::sparse_matrix_block_impl::BlockType& Eigen::internal::sparse_matrix_block_impl::operator=(const BlockType&) [with SparseMatrixType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; BlockType = Eigen::Block, -1, 1, true>]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:111:5: required from ‘Eigen::Block& Eigen::Block::operator=(const Eigen::Block&) [with XprType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; bool InnerPanel = true]’ data_manipulation.cpp:409:42: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::Index = long int]’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, 0, Eigen::Stride<0, 0> > >; Scalar = int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:35: required from ‘Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ data_manipulation.cpp:95:36: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 650 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:445: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator >, -1, 1, true> >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1338:41: required from ‘struct Eigen::internal::evaluator_wrapper_base >, -1, 1, true> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1416:8: required from ‘struct Eigen::internal::unary_evaluator >, -1, 1, true> >, Eigen::internal::IndexBased, double>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator >, -1, 1, true> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:730:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Array; SrcXprType = Eigen::ArrayWrapper >, -1, 1, true> >; Functor = assign_op]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Array; SrcXprType = Eigen::ArrayWrapper >, -1, 1, true> >; Functor = Eigen::internal::assign_op; Weak = void]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array; Src = Eigen::ArrayWrapper >, -1, 1, true> >; Func = assign_op]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::ArrayWrapper >, -1, 1, true> >; Derived = Eigen::Array]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::ArrayWrapper >, -1, 1, true> >; Derived = Eigen::Array]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Array.h:242:29: required from ‘Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase&, typename Eigen::internal::enable_if >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::ArrayWrapper >, -1, 1, true> >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if >::Scalar>::value, PrivateType>::type = Eigen::Array::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits >::Scalar = double]’ data_manipulation.cpp:136:41: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:989:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 989 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true> >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:736:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, 1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >; Functor = assign_op]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, 1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >; Functor = Eigen::internal::assign_op; Weak = void]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, 1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >; Func = assign_op]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, 1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >; Func = assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block, -1, 1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Assign.h:66:28: required from ‘Derived& Eigen::MatrixBase::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >; Derived = Eigen::Block, -1, 1, true>]’ data_manipulation.cpp:187:51: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:989:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator >, 1, -1, false> >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1338:41: required from ‘struct Eigen::internal::evaluator_wrapper_base >, 1, -1, false> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1416:8: required from ‘struct Eigen::internal::unary_evaluator >, 1, -1, false> >, Eigen::internal::IndexBased, double>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator >, 1, -1, false> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:730:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Transpose >; SrcXprType = Eigen::ArrayWrapper >, 1, -1, false> >; Functor = assign_op]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Transpose >; SrcXprType = Eigen::ArrayWrapper >, 1, -1, false> >; Functor = Eigen::internal::assign_op; Weak = void]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Array; Src = Eigen::ArrayWrapper >, 1, -1, false> >; Func = assign_op]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::ArrayWrapper >, 1, -1, false> >; Derived = Eigen::Array]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::ArrayWrapper >, 1, -1, false> >; Derived = Eigen::Array]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Array.h:242:29: required from ‘Eigen::Array<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Array(const Eigen::EigenBase&, typename Eigen::internal::enable_if >::Scalar>::value, PrivateType>::type) [with OtherDerived = Eigen::ArrayWrapper >, 1, -1, false> >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1; typename Eigen::internal::enable_if >::Scalar>::value, PrivateType>::type = Eigen::Array::PrivateType; typename OtherDerived::Scalar = double; typename Eigen::internal::traits >::Scalar = double]’ data_manipulation.cpp:368:39: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:989:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80: required from ‘struct Eigen::internal::evaluator, -1, 1, true> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:581:8: required from ‘struct Eigen::internal::unary_evaluator, -1, 1, true>, Eigen::internal::IteratorBased, double>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1004:8: required from ‘struct Eigen::internal::block_evaluator, -1, 1, true, false>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:952:8: required from ‘struct Eigen::internal::evaluator, -1, 1, true> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:683:97: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Block, -1, 1, true>; _Scalar = double; int _Options = 0; _StorageIndex = int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseRef.h:217:9: required from ‘void Eigen::Ref, _Options, _StrideType>::construct(const Expression&, Eigen::internal::true_type) [with Expression = Eigen::Block, -1, 1, true>; MatScalar = double; int MatOptions = 0; MatIndex = int; int Options = 0; StrideType = Eigen::OuterStride<>]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseRef.h:190:16: required from ‘Eigen::Ref, _Options, _StrideType>::Ref(const Eigen::SparseMatrixBase&) [with Derived = Eigen::Block, -1, 1, true>; MatScalar = double; int MatOptions = 0; MatIndex = int; int Options = 0; StrideType = Eigen::OuterStride<>]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:128:88: required from ‘Eigen::internal::sparse_matrix_block_impl::BlockType& Eigen::internal::sparse_matrix_block_impl::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Block, -1, 1, true>; SparseMatrixType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; BlockType = Eigen::Block, -1, 1, true>]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:216:34: required from ‘Eigen::internal::sparse_matrix_block_impl::BlockType& Eigen::internal::sparse_matrix_block_impl::operator=(const BlockType&) [with SparseMatrixType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; BlockType = Eigen::Block, -1, 1, true>]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:111:5: required from ‘Eigen::Block& Eigen::Block::operator=(const Eigen::Block&) [with XprType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; bool InnerPanel = true]’ data_manipulation.cpp:409:42: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true> >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:683:97: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Block, -1, 1, true>; _Scalar = double; int _Options = 0; _StorageIndex = int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseRef.h:217:9: required from ‘void Eigen::Ref, _Options, _StrideType>::construct(const Expression&, Eigen::internal::true_type) [with Expression = Eigen::Block, -1, 1, true>; MatScalar = double; int MatOptions = 0; MatIndex = int; int Options = 0; StrideType = Eigen::OuterStride<>]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseRef.h:190:16: required from ‘Eigen::Ref, _Options, _StrideType>::Ref(const Eigen::SparseMatrixBase&) [with Derived = Eigen::Block, -1, 1, true>; MatScalar = double; int MatOptions = 0; MatIndex = int; int Options = 0; StrideType = Eigen::OuterStride<>]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:128:88: required from ‘Eigen::internal::sparse_matrix_block_impl::BlockType& Eigen::internal::sparse_matrix_block_impl::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Block, -1, 1, true>; SparseMatrixType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; BlockType = Eigen::Block, -1, 1, true>]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseBlock.h:216:34: required from ‘Eigen::internal::sparse_matrix_block_impl::BlockType& Eigen::internal::sparse_matrix_block_impl::operator=(const BlockType&) [with SparseMatrixType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; BlockType = Eigen::Block, -1, 1, true>]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:111:5: required from ‘Eigen::Block& Eigen::Block::operator=(const Eigen::Block&) [with XprType = Eigen::SparseMatrix; int BlockRows = -1; int BlockCols = 1; bool InnerPanel = true]’ data_manipulation.cpp:409:42: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:989:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 989 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:131:44: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, member_mean, 0>, -1, 1> >; Func = assign_op]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, member_mean, 0>, -1, 1> >; Func = assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, member_mean, 0>, -1, 1> >]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from ‘Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1> >; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1> >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ data_manipulation.cpp:229:46: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, -1, false> >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:736:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>; SrcXprType = Eigen::Matrix; Functor = assign_op]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>; SrcXprType = Eigen::Matrix; Functor = Eigen::internal::assign_op; Weak = void]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Matrix; Func = assign_op]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Matrix; Func = assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Assign.h:66:28: required from ‘Derived& Eigen::MatrixBase::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Matrix; Derived = Eigen::Block, -1, -1, false>]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CommaInitializer.h:95:64: required from ‘Eigen::CommaInitializer& Eigen::CommaInitializer::operator,(const Eigen::DenseBase&) [with OtherDerived = Eigen::Matrix; XprType = Eigen::Matrix]’ data_manipulation.cpp:249:17: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:989:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 989 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, Eigen::Matrix, 1>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, Eigen::Matrix, 1> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, Eigen::Matrix, 1> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:115:7: required from ‘class Eigen::internal::dense_product_base >, Eigen::Matrix, 1, 8>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7: required from ‘class Eigen::ProductImpl >, Eigen::Matrix, 1, Eigen::Dense>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product >, Eigen::Matrix, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:436:50: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:377:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ data_manipulation.cpp:231:70: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:327:30: required from ‘Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Matrix; Scalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:501:10: required from ‘Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:436:18: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:377:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ data_manipulation.cpp:231:70: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:496: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘class Eigen::internal::gebp_traits’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:106:40: required from ‘void Eigen::internal::evaluateProductBlockingSizesHeuristic(Index&, Index&, Index&, Index) [with LhsScalar = double; RhsScalar = double; int KcFactor = 1; Index = long int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:301:81: required from ‘void Eigen::internal::computeProductBlockingSizes(Index&, Index&, Index&, Index) [with LhsScalar = double; RhsScalar = double; int KcFactor = 1; Index = long int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:353:66: required from ‘Eigen::internal::gemm_blocking_space::gemm_blocking_space(Eigen::Index, Eigen::Index, Eigen::Index, Eigen::Index, bool) [with int StorageOrder = 0; _LhsScalar = double; _RhsScalar = double; int MaxRows = -1; int MaxCols = -1; int MaxDepth = -1; int KcFactor = 1; Eigen::Index = long int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:485:18: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Scalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:437:20: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:377:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ data_manipulation.cpp:231:70: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:391:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 391 | typedef typename conditional::type LhsPacket; | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:392:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 392 | typedef typename conditional::type RhsPacket; | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:393:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 393 | typedef typename conditional::type ResPacket; | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gemm_pack_lhs::operator()(Scalar*, const DataMapper&, Index, Index, Index, Index) [with Scalar = double; Index = long int; DataMapper = Eigen::internal::const_blas_data_mapper; int Pack1 = 4; int Pack2 = 2; bool Conjugate = false; bool PanelMode = false]’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:182:17: required from ‘static void Eigen::internal::general_matrix_matrix_product::run(Index, Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, ResScalar, Eigen::internal::level3_blocking&, Eigen::internal::GemmParallelInfo*) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; ResScalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:228:14: required from ‘void Eigen::internal::gemm_functor::operator()(Index, Index, Index, Index, Eigen::internal::GemmParallelInfo*) const [with Scalar = double; Index = long int; Gemm = Eigen::internal::general_matrix_matrix_product; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Dest = Eigen::Matrix; BlockingType = Eigen::internal::gemm_blocking_space<0, double, double, -1, -1, -1, 1, false>]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/Parallelizer.h:98:7: required from ‘void Eigen::internal::parallelize_gemm(const Functor&, Index, Index, Index, bool) [with bool Condition = true; Functor = gemm_functor, Eigen::Transpose >, Eigen::Matrix, Eigen::Matrix, gemm_blocking_space<0, double, double, -1, -1, -1, 1, false> >; Index = long int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:487:9: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Scalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:437:20: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:377:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ data_manipulation.cpp:231:70: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1847:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1847 | PacketBlock kernel; | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1847:33: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gemm_pack_rhs::operator()(Scalar*, const DataMapper&, Index, Index, Index, Index) [with Scalar = double; Index = long int; DataMapper = Eigen::internal::const_blas_data_mapper; int nr = 4; bool Conjugate = false; bool PanelMode = false]’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:193:21: required from ‘static void Eigen::internal::general_matrix_matrix_product::run(Index, Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, ResScalar, Eigen::internal::level3_blocking&, Eigen::internal::GemmParallelInfo*) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; ResScalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:228:14: required from ‘void Eigen::internal::gemm_functor::operator()(Index, Index, Index, Index, Eigen::internal::GemmParallelInfo*) const [with Scalar = double; Index = long int; Gemm = Eigen::internal::general_matrix_matrix_product; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Dest = Eigen::Matrix; BlockingType = Eigen::internal::gemm_blocking_space<0, double, double, -1, -1, -1, 1, false>]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/Parallelizer.h:98:7: required from ‘void Eigen::internal::parallelize_gemm(const Functor&, Index, Index, Index, bool) [with bool Condition = true; Functor = gemm_functor, Eigen::Transpose >, Eigen::Matrix, Eigen::Matrix, gemm_blocking_space<0, double, double, -1, -1, -1, 1, false> >; Index = long int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:487:9: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Scalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:437:20: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:377:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ data_manipulation.cpp:231:70: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1981:62: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1981 | PacketBlock kernel; | ^~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h: In instantiation of ‘void Eigen::internal::gebp_kernel::operator()(const DataMapper&, const LhsScalar*, const RhsScalar*, Index, Index, Index, ResScalar, Index, Index, Index, Index) [with LhsScalar = double; RhsScalar = double; Index = long int; DataMapper = Eigen::internal::blas_data_mapper; int mr = 4; int nr = 4; bool ConjugateLhs = false; bool ConjugateRhs = false; ResScalar = double]’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:196:15: required from ‘static void Eigen::internal::general_matrix_matrix_product::run(Index, Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, Index, ResScalar, Eigen::internal::level3_blocking&, Eigen::internal::GemmParallelInfo*) [with Index = long int; LhsScalar = double; int LhsStorageOrder = 1; bool ConjugateLhs = false; RhsScalar = double; int RhsStorageOrder = 0; bool ConjugateRhs = false; int ResInnerStride = 1; ResScalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:228:14: required from ‘void Eigen::internal::gemm_functor::operator()(Index, Index, Index, Index, Eigen::internal::GemmParallelInfo*) const [with Scalar = double; Index = long int; Gemm = Eigen::internal::general_matrix_matrix_product; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Dest = Eigen::Matrix; BlockingType = Eigen::internal::gemm_blocking_space<0, double, double, -1, -1, -1, 1, false>]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/Parallelizer.h:98:7: required from ‘void Eigen::internal::parallelize_gemm(const Functor&, Index, Index, Index, bool) [with bool Condition = true; Functor = gemm_functor, Eigen::Transpose >, Eigen::Matrix, Eigen::Matrix, gemm_blocking_space<0, double, double, -1, -1, -1, 1, false> >; Index = long int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:487:9: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; Scalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixMatrix.h:437:20: required from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:124:75: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:377:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ data_manipulation.cpp:231:70: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1537:103: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 1537 | const int SResPacketHalfSize = unpacket_traits::half>::size; | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1592:135: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 1592 | typedef typename conditional=8,typename unpacket_traits::half,SResPacket>::type SResPacketHalf; | ^~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1593:135: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 1593 | typedef typename conditional=8,typename unpacket_traits::half,SLhsPacket>::type SLhsPacketHalf; | ^~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1594:135: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 1594 | typedef typename conditional=8,typename unpacket_traits::half,SRhsPacket>::type SRhsPacketHalf; | ^~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1595:135: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 1595 | typedef typename conditional=8,typename unpacket_traits::half,SAccPacket>::type SAccPacketHalf; | ^~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 1, -1, true>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from ‘class Eigen::DenseCoeffsBase >, 1, -1, true>, 2>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, 1, -1, true> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, 1, -1, true> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase >, 1, -1, true>, 0>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense >, 1, -1, true, true>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:377:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ data_manipulation.cpp:231:70: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 1, -1, true> >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from ‘class Eigen::DenseCoeffsBase >, 1, -1, true> >, 2>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, 1, -1, true> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, 1, -1, true> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from ‘class Eigen::TransposeImpl >, 1, -1, true>, Eigen::Dense>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >, 1, -1, true> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:578:37: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:377:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ data_manipulation.cpp:231:70: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 2>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, true> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, true>, 0>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, true, true>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 17 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:377:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ data_manipulation.cpp:231:70: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true>, Eigen::Dense>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:578:52: required from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; int ProductTag = 8; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Transpose >; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Matrix; CoeffReturnType = double; Eigen::Index = long int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:631:63: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:377:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ data_manipulation.cpp:231:70: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 2>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 1, -1, false>, 0>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 1, -1, false, true>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, member_mean, 0>, -1, 1> >; Func = assign_op]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, member_mean, 0>, -1, 1> >; Func = assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, member_mean, 0>, -1, 1> >]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from ‘Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1> >; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1> >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ data_manipulation.cpp:229:46: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator >, 1, -1, true> >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from ‘struct Eigen::internal::evaluator >, 1, -1, true> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:270:41: required from ‘struct Eigen::internal::unary_evaluator >, 1, -1, true> >, Eigen::internal::IndexBased, double>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator >, 1, -1, true> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from ‘struct Eigen::internal::evaluator >, 1, -1, true> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:681:37: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:665:8: [ skipping 19 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:377:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ data_manipulation.cpp:231:70: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:989:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 989 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true> >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from ‘struct Eigen::internal::evaluator, -1, 1, true> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:681:69: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:665:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:349:33: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:416:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:377:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ data_manipulation.cpp:231:70: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:989:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 1, -1, false> >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:349:33: required from ‘class Eigen::internal::redux_evaluator, 1, -1, false> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:416:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Block, 1, -1, false>; typename Eigen::internal::traits::Scalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:468:32: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::mean() const [with Derived = Eigen::Block, 1, -1, false>; typename Eigen::internal::traits::Scalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:105:1: required from ‘ResultType Eigen::internal::member_mean::operator()(const XprType&) const [with XprType = Eigen::Block, 1, -1, false>; ResultType = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1318:23: required from ‘const Eigen::internal::evaluator >::Scalar Eigen::internal::evaluator >::coeff(Eigen::Index) const [with ArgType = Eigen::Matrix; MemberOp = Eigen::internal::member_mean; int Direction = 0; Scalar = double; Eigen::Index = long int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:637:61: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, member_mean, 0>, -1, 1> >; Func = assign_op]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, member_mean, 0>, -1, 1> >; Func = assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, member_mean, 0>, -1, 1> >]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from ‘Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1> >; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1> >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ data_manipulation.cpp:229:46: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:989:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; Eigen::Index = long int]’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> > >; Scalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, true> >, const Eigen::Block, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:578:75: required from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::Transpose >; Rhs = Eigen::Matrix; int ProductTag = 8; typename Eigen::internal::traits::Lhs>::Scalar = double; typename Eigen::Product::Lhs = Eigen::Transpose >; typename Eigen::internal::traits::Rhs>::Scalar = double; typename Eigen::Product::Rhs = Eigen::Matrix; CoeffReturnType = double; Eigen::Index = long int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:631:63: required from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator >; SrcEvaluatorTypeT = Eigen::internal::evaluator >, Eigen::Matrix, 1> >; Functor = Eigen::internal::assign_op; int Version = 0; Eigen::Index = long int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:645:16: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Functor = Eigen::internal::assign_op; Weak = void]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Func = assign_op]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:377:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Product >, Eigen::Matrix, 0>, const Eigen::CwiseNullaryOp, const Eigen::Matrix > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ data_manipulation.cpp:231:70: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 650 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Block, -1, 1, true>; Eigen::Index = long int]’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, -1, 1, true> >; Scalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Block, -1, 1, true>; typename Eigen::internal::traits::Scalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:468:32: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::mean() const [with Derived = Eigen::Block, -1, 1, true>; typename Eigen::internal::traits::Scalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:105:1: required from ‘ResultType Eigen::internal::member_mean::operator()(const XprType&) const [with XprType = Eigen::Block, -1, 1, true>; ResultType = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1316:23: required from ‘const Eigen::internal::evaluator >::Scalar Eigen::internal::evaluator >::coeff(Eigen::Index) const [with ArgType = Eigen::Matrix; MemberOp = Eigen::internal::member_mean; int Direction = 0; Scalar = double; Eigen::Index = long int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:637:61: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, member_mean, 0>, -1, 1> >; Func = assign_op]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, member_mean, 0>, -1, 1> >; Func = assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, member_mean, 0>, -1, 1> >]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from ‘Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1> >; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Replicate, Eigen::internal::member_mean, 0>, -1, 1> >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ data_manipulation.cpp:229:46: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppProgress/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-ijJKKf/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/build/r-base-ijJKKf/r-base-4.3.2=/usr/src/r-base-4.3.2-1 -Wdate-time -D_FORTIFY_SOURCE=2 -c fast_NN_dist.cpp -o fast_NN_dist.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppProgress/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-ijJKKf/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/build/r-base-ijJKKf/r-base-4.3.2=/usr/src/r-base-4.3.2-1 -Wdate-time -D_FORTIFY_SOURCE=2 -c integration.cpp -o integration.o In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:397, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, from /usr/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:28, from /usr/lib/R/site-library/RcppEigen/include/RcppEigen.h:25, from integration.cpp:1: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 60 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 61 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 62 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 161 | template<> struct unpacket_traits { typedef float type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 162 | template<> struct unpacket_traits { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 163 | template<> struct unpacket_traits { typedef int type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 718 | struct palign_impl | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 741 | struct palign_impl | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 764 | struct palign_impl | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 778 | ptranspose(PacketBlock& kernel) { | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 783 | ptranspose(PacketBlock& kernel) { | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 790 | ptranspose(PacketBlock& kernel) { | ^ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:377: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:370: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:439: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/SparseCore:37, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Sparse:26, from /usr/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:29: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ /usr/lib/R/site-library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/lib/R/site-library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) long long int>::half’ {aka ‘__m128i’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/lib/R/site-library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ /usr/lib/R/site-library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/lib/R/site-library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ integration.cpp:23:1: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ integration.cpp:23:1: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ integration.cpp:23:1: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 1, -1, false>, 0>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34: required from ‘class Eigen::MapBase, 1, -1, false>, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 1, -1, false, true>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, 1, -1, false, Eigen::Dense>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, 1, -1, false>’ integration.cpp:43:41: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase > >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseTranspose.h:22:9: required from ‘class Eigen::internal::SparseTransposeImpl, 1024>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseTranspose.h:45:37: required from ‘class Eigen::TransposeImpl, Eigen::Sparse>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ integration.cpp:60:53: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ integration.cpp:60:79: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, Eigen::CwiseNullaryOp, Eigen::Matrix >, 0>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, Eigen::CwiseNullaryOp, Eigen::Matrix >, 0> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, Eigen::CwiseNullaryOp, Eigen::Matrix >, 0> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:115:7: required from ‘class Eigen::internal::dense_product_base >, Eigen::CwiseNullaryOp, Eigen::Matrix >, 0, 7>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:147:7: required from ‘class Eigen::ProductImpl >, Eigen::CwiseNullaryOp, Eigen::Matrix >, 0, Eigen::Dense>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product >, Eigen::CwiseNullaryOp, Eigen::Matrix >, 0>’ integration.cpp:60:99: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ integration.cpp:68:61: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::internal::member_sum, 0>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::internal::member_sum, 0> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::internal::member_sum, 0> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:56:7: required from ‘class Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>’ integration.cpp:77:57: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase > >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseView.h:45:7: required from ‘class Eigen::SparseView >’ integration.cpp:83:41: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >, Eigen::SparseMatrix, 2> >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:140:7: required from ‘class Eigen::ProductImpl >, Eigen::SparseMatrix, 2, Eigen::Sparse>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product >, Eigen::SparseMatrix, 2>’ integration.cpp:94:85: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase, const Eigen::SparseMatrix, const Eigen::Product >, Eigen::SparseMatrix, 2> > >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:36:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::SparseMatrix, const Eigen::Product >, Eigen::SparseMatrix, 2>, Eigen::Sparse>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::SparseMatrix, const Eigen::Product >, Eigen::SparseMatrix, 2> >’ integration.cpp:94:85: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, true> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, true>, 0>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34: required from ‘class Eigen::MapBase, -1, 1, true>, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, true, true>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, -1, 1, true, Eigen::Dense>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, -1, 1, true>’ integration.cpp:140:36: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true>, Eigen::Dense>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> >’ integration.cpp:140:60: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1084:12: required from ‘Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::SparseView >; _Scalar = double; int _Options = 0; _StorageIndex = int]’ integration.cpp:83:42: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80: required from ‘struct Eigen::internal::evaluator > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1391:8: required from ‘struct Eigen::internal::evaluator >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from ‘struct Eigen::internal::evaluator >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h:64:51: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::SparseMatrix, const Eigen::Product >, Eigen::SparseMatrix, 2> >, Eigen::internal::IteratorBased, Eigen::internal::IteratorBased, double, double>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:665:8: required from ‘struct Eigen::internal::evaluator, const Eigen::SparseMatrix, const Eigen::Product >, Eigen::SparseMatrix, 2> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:683:97: required from ‘Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::SparseMatrix, const Eigen::Product >, Eigen::SparseMatrix, 2> >; _Scalar = double; int _Options = 0; _StorageIndex = int]’ integration.cpp:94:85: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:926:66: required from ‘void Eigen::internal::set_from_triplets(const InputIterator&, const InputIterator&, SparseMatrixType&, DupFunctor) [with InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; SparseMatrixType = Eigen::SparseMatrix; DupFunctor = FindWeightsC(Rcpp::NumericVector, Eigen::MatrixXd, std::vector >, std::vector >, Eigen::MatrixXd, Eigen::VectorXd, double, double, bool)::]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1012:103: required from ‘void Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::setFromTriplets(const InputIterators&, const InputIterators&, DupFunctor) [with InputIterators = __gnu_cxx::__normal_iterator*, std::vector > >; DupFunctor = FindWeightsC(Rcpp::NumericVector, Eigen::MatrixXd, std::vector >, std::vector >, Eigen::MatrixXd, Eigen::VectorXd, double, double, bool)::; _Scalar = double; int _Options = 0; _StorageIndex = int]’ integration.cpp:59:33: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:29: required from ‘Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:163:21: required from ‘Eigen::SparseCompressedBase::InnerIterator::InnerIterator(const Eigen::SparseCompressedBase&, Eigen::Index) [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ integration.cpp:62:73: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> >, Eigen::Dense>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:98:40: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> >; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:110:23: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::norm() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> >; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ integration.cpp:140:67: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80: required from ‘struct Eigen::internal::evaluator > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1391:8: required from ‘struct Eigen::internal::evaluator >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1067:93: required from ‘Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::SparseMatrix; _Scalar = double; int _Options = 0; _StorageIndex = int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:949:7: required from ‘void Eigen::internal::set_from_triplets(const InputIterator&, const InputIterator&, SparseMatrixType&, DupFunctor) [with InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; SparseMatrixType = Eigen::SparseMatrix; DupFunctor = FindWeightsC(Rcpp::NumericVector, Eigen::MatrixXd, std::vector >, std::vector >, Eigen::MatrixXd, Eigen::VectorXd, double, double, bool)::]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1012:103: required from ‘void Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::setFromTriplets(const InputIterators&, const InputIterators&, DupFunctor) [with InputIterators = __gnu_cxx::__normal_iterator*, std::vector > >; DupFunctor = FindWeightsC(Rcpp::NumericVector, Eigen::MatrixXd, std::vector >, std::vector >, Eigen::MatrixXd, Eigen::VectorXd, double, double, bool)::; _Scalar = double; int _Options = 0; _StorageIndex = int]’ integration.cpp:59:33: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:327:30: required from ‘Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Scalar = int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:501:10: required from ‘Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1084:73: required from ‘Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::SparseView >; _Scalar = double; int _Options = 0; _StorageIndex = int]’ integration.cpp:83:42: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:829:17: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Block, 1, -1, false>; Func = assign_op]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Block, 1, -1, false>; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Block, 1, -1, false>; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:377:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Block, 1, -1, false>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ integration.cpp:43:46: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:445: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true> >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from ‘struct Eigen::internal::evaluator, -1, 1, true> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:681:37: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:665:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:522:41: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:349:33: required from ‘class Eigen::internal::redux_evaluator, const Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:416:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > >; typename Eigen::internal::traits::Scalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > >; typename Eigen::internal::traits::Scalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:98:46: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> >; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:110:23: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::norm() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> >; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ integration.cpp:140:67: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:989:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 989 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 1, -1, false> >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:730:20: required from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Transpose >; SrcXprType = Eigen::Block, 1, -1, false>; Functor = assign_op]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Transpose >; SrcXprType = Eigen::Block, 1, -1, false>; Functor = Eigen::internal::assign_op; Weak = void]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Block, 1, -1, false>; Func = assign_op]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Block, 1, -1, false>; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Block, 1, -1, false>; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:377:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Block, 1, -1, false>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ integration.cpp:43:46: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:989:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::Index = long int]’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, 0, Eigen::Stride<0, 0> > >; Scalar = int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:35: required from ‘Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:163:21: required from ‘Eigen::SparseCompressedBase::InnerIterator::InnerIterator(const Eigen::SparseCompressedBase&, Eigen::Index) [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ integration.cpp:62:73: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 650 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > >; Eigen::Index = long int]’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > > >; Scalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > >; typename Eigen::internal::traits::Scalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> > >; typename Eigen::internal::traits::Scalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:98:46: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> >; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:110:23: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::norm() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Block, -1, 1, true> >; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ integration.cpp:140:67: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from ‘class Eigen::DenseCoeffsBase, -1, 1, true>, 2>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, -1, 1, true> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, -1, 1, true> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, -1, 1, true>, 0>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, -1, 1, true, true>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Transpose >; SrcXprType = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Functor = Eigen::internal::assign_op; Weak = void]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::PartialReduxExpr, member_sum, 0>; Func = assign_op]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:377:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ integration.cpp:77:58: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 2>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 1, -1, false>, 0>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 1, -1, false, true>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Transpose >; SrcXprType = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Functor = Eigen::internal::assign_op; Weak = void]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::PartialReduxExpr, member_sum, 0>; Func = assign_op]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:377:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ integration.cpp:77:58: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, -1, 1, true> >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:349:33: required from ‘class Eigen::internal::redux_evaluator, -1, 1, true> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:416:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Block, -1, 1, true>; typename Eigen::internal::traits::Scalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Block, -1, 1, true>; typename Eigen::internal::traits::Scalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:104:1: required from ‘ResultType Eigen::internal::member_sum::operator()(const XprType&) const [with XprType = Eigen::Block, -1, 1, true>; ResultType = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1316:23: required from ‘const Eigen::internal::evaluator >::Scalar Eigen::internal::evaluator >::coeff(Eigen::Index) const [with ArgType = Eigen::Matrix; MemberOp = Eigen::internal::member_sum; int Direction = 0; Scalar = double; Eigen::Index = long int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:637:61: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Transpose >; SrcXprType = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Functor = Eigen::internal::assign_op; Weak = void]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::PartialReduxExpr, member_sum, 0>; Func = assign_op]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:377:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ integration.cpp:77:58: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:989:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 989 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 1, -1, false> >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:349:33: required from ‘class Eigen::internal::redux_evaluator, 1, -1, false> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:416:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Block, 1, -1, false>; typename Eigen::internal::traits::Scalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Block, 1, -1, false>; typename Eigen::internal::traits::Scalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:104:1: required from ‘ResultType Eigen::internal::member_sum::operator()(const XprType&) const [with XprType = Eigen::Block, 1, -1, false>; ResultType = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1318:23: required from ‘const Eigen::internal::evaluator >::Scalar Eigen::internal::evaluator >::coeff(Eigen::Index) const [with ArgType = Eigen::Matrix; MemberOp = Eigen::internal::member_sum; int Direction = 0; Scalar = double; Eigen::Index = long int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:637:61: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Transpose >; SrcXprType = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Functor = Eigen::internal::assign_op; Weak = void]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::PartialReduxExpr, member_sum, 0>; Func = assign_op]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:377:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ integration.cpp:77:58: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:989:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Block, -1, 1, true>; Eigen::Index = long int]’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, -1, 1, true> >; Scalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Block, -1, 1, true>; typename Eigen::internal::traits::Scalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Block, -1, 1, true>; typename Eigen::internal::traits::Scalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:104:1: required from ‘ResultType Eigen::internal::member_sum::operator()(const XprType&) const [with XprType = Eigen::Block, -1, 1, true>; ResultType = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1316:23: required from ‘const Eigen::internal::evaluator >::Scalar Eigen::internal::evaluator >::coeff(Eigen::Index) const [with ArgType = Eigen::Matrix; MemberOp = Eigen::internal::member_sum; int Direction = 0; Scalar = double; Eigen::Index = long int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:637:61: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Transpose >; SrcXprType = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Functor = Eigen::internal::assign_op; Weak = void]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::PartialReduxExpr, member_sum, 0>; Func = assign_op]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:732:41: required from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:537:19: required from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; Derived = Eigen::Matrix]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:377:29: required from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::PartialReduxExpr, Eigen::internal::member_sum, 0>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ integration.cpp:77:58: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 650 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppProgress/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-ijJKKf/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/build/r-base-ijJKKf/r-base-4.3.2=/usr/src/r-base-4.3.2-1 -Wdate-time -D_FORTIFY_SOURCE=2 -c snn.cpp -o snn.o In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:397, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, from /usr/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:28, from /usr/lib/R/site-library/RcppEigen/include/RcppEigen.h:25, from snn.cpp:1: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 60 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 61 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 62 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 161 | template<> struct unpacket_traits { typedef float type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 162 | template<> struct unpacket_traits { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 163 | template<> struct unpacket_traits { typedef int type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; }; | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 718 | struct palign_impl | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 741 | struct palign_impl | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 764 | struct palign_impl | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 778 | ptranspose(PacketBlock& kernel) { | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 783 | ptranspose(PacketBlock& kernel) { | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes] 790 | ptranspose(PacketBlock& kernel) { | ^ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:377: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:370: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:439: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from ‘struct Eigen::internal::traits >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from ‘class Eigen::Quaternion’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/SparseCore:37, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Sparse:26, from /usr/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:29: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ /usr/lib/R/site-library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/lib/R/site-library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) long long int>::half’ {aka ‘__m128i’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/lib/R/site-library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from ‘class Eigen::TransposeImpl, Eigen::Dense>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ /usr/lib/R/site-library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ /usr/lib/R/site-library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ snn.cpp:16:79: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ snn.cpp:16:79: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase > >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseTranspose.h:22:9: required from ‘class Eigen::internal::SparseTransposeImpl, 1024>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseTranspose.h:45:37: required from ‘class Eigen::TransposeImpl, Eigen::Sparse>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >’ snn.cpp:27:29: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase, Eigen::Transpose >, 2> >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:140:7: required from ‘class Eigen::ProductImpl, Eigen::Transpose >, 2, Eigen::Sparse>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product, Eigen::Transpose >, 2>’ snn.cpp:27:31: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 1, -1, false>, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 1, -1, false> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 1, -1, false> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 1, -1, false>, 0>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34: required from ‘class Eigen::MapBase, 1, -1, false>, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense, 1, -1, false, true>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from ‘class Eigen::BlockImpl, 1, -1, false, Eigen::Dense>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from ‘class Eigen::Block, 1, -1, false>’ snn.cpp:106:30: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false>, Eigen::Dense>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> >’ snn.cpp:106:48: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80: required from ‘struct Eigen::internal::evaluator > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1391:8: required from ‘struct Eigen::internal::evaluator >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:96:8: required from ‘struct Eigen::internal::product_evaluator, Eigen::Transpose >, 2>, 8, Eigen::SparseShape, Eigen::SparseShape, double, double>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:29:8: required from ‘struct Eigen::internal::evaluator, Eigen::Transpose >, 2> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1067:93: required from ‘Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 2>; _Scalar = double; int _Options = 0; _StorageIndex = int]’ snn.cpp:27:31: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 3>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1084:12: required from ‘Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 2>; _Scalar = double; int _Options = 0; _StorageIndex = int]’ snn.cpp:27:31: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:926:66: required from ‘void Eigen::internal::set_from_triplets(const InputIterator&, const InputIterator&, SparseMatrixType&, DupFunctor) [with InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; SparseMatrixType = Eigen::SparseMatrix; DupFunctor = scalar_sum_op]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:996:92: required from ‘void Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::setFromTriplets(const InputIterators&, const InputIterators&) [with InputIterators = __gnu_cxx::__normal_iterator*, std::vector > >; _Scalar = double; int _Options = 0; _StorageIndex = int]’ snn.cpp:26:22: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from ‘class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map, 0, Eigen::Stride<0, 0> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:29: required from ‘Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:163:21: required from ‘Eigen::SparseCompressedBase::InnerIterator::InnerIterator(const Eigen::SparseCompressedBase&, Eigen::Index) [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ snn.cpp:29:62: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> > >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> > > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> > > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from ‘class Eigen::CwiseUnaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> >, Eigen::Dense>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from ‘class Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:98:40: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> >; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:110:23: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::norm() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> >; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ snn.cpp:106:55: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80: required from ‘struct Eigen::internal::evaluator > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1391:8: required from ‘struct Eigen::internal::evaluator >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1067:93: required from ‘Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::SparseMatrix; _Scalar = double; int _Options = 0; _StorageIndex = int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:949:7: required from ‘void Eigen::internal::set_from_triplets(const InputIterator&, const InputIterator&, SparseMatrixType&, DupFunctor) [with InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; SparseMatrixType = Eigen::SparseMatrix; DupFunctor = scalar_sum_op]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:996:92: required from ‘void Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::setFromTriplets(const InputIterators&, const InputIterators&) [with InputIterators = __gnu_cxx::__normal_iterator*, std::vector > >; _Scalar = double; int _Options = 0; _StorageIndex = int]’ snn.cpp:26:22: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:327:30: required from ‘Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Scalar = int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:501:10: required from ‘Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1084:73: required from ‘Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Product, Eigen::Transpose >, 2>; _Scalar = double; int _Options = 0; _StorageIndex = int]’ snn.cpp:27:31: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:445: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator, 1, -1, false> >’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from ‘struct Eigen::internal::evaluator, 1, -1, false> >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:681:37: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:665:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:522:41: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:349:33: required from ‘class Eigen::internal::redux_evaluator, const Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> > > >’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:416:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> > >; typename Eigen::internal::traits::Scalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> > >; typename Eigen::internal::traits::Scalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:98:46: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> >; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Dot.h:110:23: required from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::norm() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Block, 1, -1, false>, const Eigen::Block, 1, -1, false> >; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]’ snn.cpp:106:55: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:989:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 989 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::Index = long int]’: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, 0, Eigen::Stride<0, 0> > >; Scalar = int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:35: required from ‘Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:163:21: required from ‘Eigen::SparseCompressedBase::InnerIterator::InnerIterator(const Eigen::SparseCompressedBase&, Eigen::Index) [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]’ snn.cpp:29:62: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128i’} [-Wignored-attributes] 650 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppProgress/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-ijJKKf/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/build/r-base-ijJKKf/r-base-4.3.2=/usr/src/r-base-4.3.2-1 -Wdate-time -D_FORTIFY_SOURCE=2 -c stats.cpp -o stats.o gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -I'/usr/lib/R/site-library/RcppProgress/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-ijJKKf/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/build/r-base-ijJKKf/r-base-4.3.2=/usr/src/r-base-4.3.2-1 -Wdate-time -D_FORTIFY_SOURCE=2 -c valid_pointer.c -o valid_pointer.o g++ -std=gnu++17 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -o Seurat.so ModularityOptimizer.o RModularityOptimizer.o RcppExports.o data_manipulation.o fast_NN_dist.o integration.o snn.o stats.o valid_pointer.o -L/usr/lib/R/lib -lR make[1]: Leaving directory '/<>/src' make[1]: Entering directory '/<>/src' make[1]: Leaving directory '/<>/src' installing to /<>/debian/r-cran-seurat/usr/lib/R/site-library/00LOCK-r-cran-seurat-5.0.1/00new/Seurat/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Seurat) rm -f /<>/debian/r-cran-seurat/usr/lib/R/site-library/Seurat/LICENSE W: Ignoring specified R dependency: R (>= 4.0.0) I: Using r-cran-seuratobject for Depends:SeuratObject (>= 5.0.0) I: Using r-cran-ape for Recommends:ape I: Using r-cran-rsvd for Recommends:rsvd I: Using r-cran-testthat for Recommends:testthat I: Using r-cran-hdf5r for Recommends:hdf5r I: Using r-bioc-s4vectors for Recommends:s4vectors I: Using r-bioc-summarizedexperiment for Recommends:summarizedexperiment I: Using r-bioc-singlecellexperiment for Recommends:singlecellexperiment I: Using r-bioc-deseq2 for Recommends:deseq2 I: Using r-bioc-biocgenerics for Recommends:biocgenerics I: Using r-bioc-genomicranges for Recommends:genomicranges I: Using r-bioc-genomeinfodb for Recommends:genomeinfodb I: Using r-bioc-iranges for Recommends:iranges I: Using r-bioc-rtracklayer for Recommends:rtracklayer I: Using r-bioc-monocle for Recommends:monocle I: Using r-bioc-biobase for Recommends:biobase I: Using r-cran-vgam for Recommends:vgam I: Using r-bioc-limma for Recommends:limma I: Using r-cran-metap for Recommends:metap I: Using r-cran-mixtools for Recommends:mixtools I: Using r-cran-ggrastr for Recommends:ggrastr I: Using r-cran-data.table for Recommends:data.table I: Using r-cran-r.utils for Recommends:r.utils I: Using r-bioc-delayedarray for Recommends:delayedarray W: Cannot find a debian package for Suggests:BPCells W: Cannot find a debian package for Suggests:MAST W: Cannot find a debian package for Suggests:Rfast2 W: Cannot find a debian package for Suggests:enrichR W: Cannot find a debian package for Suggests:presto W: Cannot find a debian package for Suggests:harmony I: Using r-cran-cluster for Imports:cluster I: Using r-cran-cowplot for Imports:cowplot I: Using r-cran-fastdummies for Imports:fastDummies I: Using r-cran-fitdistrplus for Imports:fitdistrplus I: Using r-cran-future for Imports:future I: Using r-cran-future.apply for Imports:future.apply I: Using r-cran-generics for Imports:generics (>= 0.1.3) I: Using r-cran-ggplot2 for Imports:ggplot2 (>= 3.3.0) I: Using r-cran-ggrepel for Imports:ggrepel I: Using r-cran-ggridges for Imports:ggridges I: Using r-cran-httr for Imports:httr I: Using r-cran-ica for Imports:ica I: Using r-cran-igraph for Imports:igraph I: Using r-cran-irlba for Imports:irlba I: Using r-cran-jsonlite for Imports:jsonlite I: Using r-cran-kernsmooth for Imports:KernSmooth I: Using r-cran-leiden for Imports:leiden (>= 0.3.1) I: Using r-cran-lifecycle for Imports:lifecycle I: Using r-cran-lmtest for Imports:lmtest I: Using r-cran-mass for Imports:MASS I: Using r-cran-matrix for Imports:Matrix (>= 1.5-0) I: Using r-cran-matrixstats for Imports:matrixStats I: Using r-cran-miniui for Imports:miniUI I: Using r-cran-patchwork for Imports:patchwork I: Using r-cran-pbapply for Imports:pbapply I: Using r-cran-plotly for Imports:plotly (>= 4.9.0) I: Using r-cran-png for Imports:png I: Using r-cran-progressr for Imports:progressr I: Using r-cran-purrr for Imports:purrr I: Using r-cran-rann for Imports:RANN I: Using r-cran-rcolorbrewer for Imports:RColorBrewer I: Using r-cran-rcpp for Imports:Rcpp (>= 1.0.7) I: Using r-cran-rcppannoy for Imports:RcppAnnoy (>= 0.0.18) I: Using r-cran-rcpphnsw for Imports:RcppHNSW I: Using r-cran-reticulate for Imports:reticulate I: Using r-cran-rlang for Imports:rlang I: Using r-cran-rocr for Imports:ROCR I: Using r-cran-rspectra for Imports:RSpectra I: Using r-cran-rtsne for Imports:Rtsne I: Using r-cran-scales for Imports:scales I: Using r-cran-scattermore for Imports:scattermore (>= 1.2) I: Using r-cran-sctransform for Imports:sctransform (>= 0.4.1) I: Using r-cran-shiny for Imports:shiny I: Using r-cran-spatstat.explore for Imports:spatstat.explore I: Using r-cran-spatstat.geom for Imports:spatstat.geom I: Using r-cran-tibble for Imports:tibble I: Using r-cran-uwot for Imports:uwot (>= 0.1.10) I: Using r-cran-rcpp for LinkingTo:Rcpp (>= 0.11.0) I: Using r-cran-rcppeigen for LinkingTo:RcppEigen I: Using r-cran-rcppprogress for LinkingTo:RcppProgress I: Use r-cran-seurat as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R d324cfd49888f86e7358e6865684aafee2b3df2b dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing r-cran-seurat-dbgsym (in debian/.debhelper/r-cran-seurat/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing r-cran-seurat (in debian/r-cran-seurat); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/r-cran-seurat/dbgsym-root/DEBIAN/control, package r-cran-seurat-dbgsym, directory debian/.debhelper/r-cran-seurat/dbgsym-root dpkg-deb: building package 'r-cran-seurat-dbgsym' in 'debian/.debhelper/scratch-space/build-r-cran-seurat/r-cran-seurat-dbgsym_5.0.1-1_amd64.deb'. Renaming r-cran-seurat-dbgsym_5.0.1-1_amd64.deb to r-cran-seurat-dbgsym_5.0.1-1_amd64.ddeb pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-cran-seurat/DEBIAN/control, package r-cran-seurat, directory debian/r-cran-seurat pkgstripfiles: Truncating usr/share/doc/r-cran-seurat/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-cran-seurat ... xargs: warning: options --max-lines and --replace/-I/-i are mutually exclusive, ignoring previous --max-lines value o pkgstripfiles: PNG optimization (1/0) for package r-cran-seurat took 15 s dpkg-deb: building package 'r-cran-seurat' in '../r-cran-seurat_5.0.1-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../r-cran-seurat_5.0.1-1_amd64.buildinfo dpkg-genchanges --build=binary -mLaunchpad Build Daemon -O../r-cran-seurat_5.0.1-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-11-28T18:30:48Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-cran-seurat_5.0.1-1_amd64.changes: ------------------------------------ Format: 1.8 Date: Fri, 24 Nov 2023 17:04:16 +0100 Source: r-cran-seurat Binary: r-cran-seurat Built-For-Profiles: noudeb Architecture: amd64 Version: 5.0.1-1 Distribution: noble-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: r-cran-seurat - Tools for Single Cell Genomics Changes: r-cran-seurat (5.0.1-1) unstable; urgency=medium . * Team upload * d/watch: cloud.r-project.org does not seem to respond - using cran.r-project.org instead * dh-update-R to update Build-Depends (routine-update) * It turns out that we really need r-cran-seuratobject (>= 5.0.1) (instead of >= 5.0.0) Checksums-Sha1: 7fe5c5385dd335334f9176f048efde1b7c74a1ab 2995670 r-cran-seurat-dbgsym_5.0.1-1_amd64.ddeb 025e5cb1aed6062bb8a9398c65e5f647f72c115f 16697 r-cran-seurat_5.0.1-1_amd64.buildinfo 0352ad766255b4cd7f4801ecbabe9b7e3601723d 3543126 r-cran-seurat_5.0.1-1_amd64.deb Checksums-Sha256: 243fb39625f706ce897d21077ff7eea56f0f2954c9ee07ee16a2212ff3cf4140 2995670 r-cran-seurat-dbgsym_5.0.1-1_amd64.ddeb fa5097e32ac0941a111ce4ed065c5a826d2abc14b17e294b22b9fa73c794ac19 16697 r-cran-seurat_5.0.1-1_amd64.buildinfo 3e1aad631d9e702c914d2c7c80b4e1f5a535b10a9845e3b320afafe19b5f1261 3543126 r-cran-seurat_5.0.1-1_amd64.deb Files: 9d09a8253a864cd0b1cc4b03c4714f68 2995670 debug optional r-cran-seurat-dbgsym_5.0.1-1_amd64.ddeb 59b167bd1fe8e3a2049e6491222cb033 16697 gnu-r optional r-cran-seurat_5.0.1-1_amd64.buildinfo 31f834d68015922c1cbdcdcb0d454a8b 3543126 gnu-r optional r-cran-seurat_5.0.1-1_amd64.deb /<>/r-cran-seurat_5.0.1-1_amd64.changes.new could not be renamed to /<>/r-cran-seurat_5.0.1-1_amd64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: r-cran-seurat Binary: r-cran-seurat r-cran-seurat-dbgsym Architecture: amd64 Version: 5.0.1-1 Checksums-Md5: 9d09a8253a864cd0b1cc4b03c4714f68 2995670 r-cran-seurat-dbgsym_5.0.1-1_amd64.ddeb 31f834d68015922c1cbdcdcb0d454a8b 3543126 r-cran-seurat_5.0.1-1_amd64.deb Checksums-Sha1: 7fe5c5385dd335334f9176f048efde1b7c74a1ab 2995670 r-cran-seurat-dbgsym_5.0.1-1_amd64.ddeb 0352ad766255b4cd7f4801ecbabe9b7e3601723d 3543126 r-cran-seurat_5.0.1-1_amd64.deb Checksums-Sha256: 243fb39625f706ce897d21077ff7eea56f0f2954c9ee07ee16a2212ff3cf4140 2995670 r-cran-seurat-dbgsym_5.0.1-1_amd64.ddeb 3e1aad631d9e702c914d2c7c80b4e1f5a535b10a9845e3b320afafe19b5f1261 3543126 r-cran-seurat_5.0.1-1_amd64.deb Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Tue, 28 Nov 2023 18:30:47 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-13build1), autotools-dev (= 20220109.1), base-files (= 13ubuntu5), base-passwd (= 3.6.2), bash (= 5.2.21-2ubuntu1), binutils (= 2.41-7ubuntu1), binutils-common (= 2.41-7ubuntu1), binutils-x86-64-linux-gnu (= 2.41-7ubuntu1), bsdextrautils (= 2.39.2-6ubuntu1), bsdutils (= 1:2.39.2-6ubuntu1), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5build1), ca-certificates (= 20230311ubuntu1), coreutils (= 9.1-1ubuntu2), cpp (= 4:13.2.0-2ubuntu1), cpp-13 (= 13.2.0-7ubuntu1), dash (= 0.5.12-6ubuntu1), dctrl-tools (= 2.24-3build2), debconf (= 1.5.82), debhelper (= 13.11.8ubuntu1), debianutils (= 5.14), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-r (= 20230707ubuntu1), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.1ubuntu3), dpkg-dev (= 1.22.1ubuntu3), dwz (= 0.15-1), file (= 1:5.45-2), findutils (= 4.9.0-5), fontconfig (= 2.14.2-4ubuntu1), fontconfig-config (= 2.14.2-4ubuntu1), fonts-font-awesome (= 5.0.10+really4.7.0~dfsg-4.1), fonts-glyphicons-halflings (= 1.009~3.4.1+dfsg-3), fonts-mathjax (= 2.7.9+dfsg-1), fonts-noto-core (= 20201225-2), fonts-noto-mono (= 20201225-2), g++ (= 4:13.2.0-2ubuntu1), g++-13 (= 13.2.0-7ubuntu1), gcc (= 4:13.2.0-2ubuntu1), gcc-13 (= 13.2.0-7ubuntu1), gcc-13-base (= 13.2.0-7ubuntu1), gettext (= 0.21-13build1), gettext-base (= 0.21-13build1), gfortran (= 4:13.2.0-2ubuntu1), gfortran-13 (= 13.2.0-7ubuntu1), grep (= 3.11-3), groff-base (= 1.23.0-3), gzip (= 1.12-1ubuntu1), hostname (= 3.23+nmu1ubuntu1), icu-devtools (= 72.1-3ubuntu3), init-system-helpers (= 1.65.2ubuntu1), intltool-debian (= 0.35.0+20060710.6), javascript-common (= 11+nmu1), libacl1 (= 2.3.1-3), libalgorithm-c3-perl (= 0.11-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 13.2.0-7ubuntu1), libatomic1 (= 13.2.0-7ubuntu1), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.1.1-1build1), libaudit1 (= 1:3.1.1-1build1), libb-hooks-endofscope-perl (= 0.26-1), libb-hooks-op-check-perl (= 0.22-2build1), libbinutils (= 2.41-7ubuntu1), libblas-dev (= 3.11.0-2build1), libblas3 (= 3.11.0-2build1), libblkid1 (= 2.39.2-6ubuntu1), libboost1.81-dev (= 1.81.0-7build1), libbrotli1 (= 1.1.0-2), libbsd0 (= 0.11.7-4), libbz2-1.0 (= 1.0.8-5build1), libbz2-dev (= 1.0.8-5build1), libc-bin (= 2.38-3ubuntu1), libc-dev-bin (= 2.38-3ubuntu1), libc6 (= 2.38-3ubuntu1), libc6-dev (= 2.38-3ubuntu1), libcairo2 (= 1.18.0-1), libcap-ng0 (= 0.8.3-1build3), libcap2 (= 1:2.66-4ubuntu1), libcc1-0 (= 13.2.0-7ubuntu1), libclass-c3-perl (= 0.35-2), libclass-load-perl (= 0.25-2), libclass-load-xs-perl (= 0.10-2build1), libclone-perl (= 0.46-1), libcom-err2 (= 1.47.0-2ubuntu1), libcrypt-dev (= 1:4.4.36-2), libcrypt1 (= 1:4.4.36-2), libctf-nobfd0 (= 2.41-7ubuntu1), libctf0 (= 2.41-7ubuntu1), libcurl3-gnutls (= 8.4.0-2ubuntu1), libcurl4 (= 8.4.0-2ubuntu1), libdata-optlist-perl (= 0.114-1), libdatrie1 (= 0.2.13-2), libdb5.3 (= 5.3.28+dfsg2-4), libdebconfclient0 (= 0.270ubuntu1), libdebhelper-perl (= 13.11.8ubuntu1), libdeflate0 (= 1.18-1), libdevel-callchecker-perl (= 0.008-2), libdevel-globaldestruction-perl (= 0.14-4), libdevel-overloadinfo-perl (= 0.007-1), libdevel-stacktrace-perl (= 2.0400-2), libdist-checkconflicts-perl (= 0.11-2), libdpkg-perl (= 1.22.1ubuntu3), libdw1 (= 0.190-1), libdynaloader-functions-perl (= 0.003-3), libelf1 (= 0.190-1), libencode-locale-perl (= 1.05-3), libeval-closure-perl (= 0.14-3), libexpat1 (= 2.5.0-2), libffi8 (= 3.4.4-2), libfile-stripnondeterminism-perl (= 1.13.1-1), libfile-which-perl (= 1.27-2), libfontconfig1 (= 2.14.2-4ubuntu1), libfreetype6 (= 2.13.2+dfsg-1), libfribidi0 (= 1.0.13-3), libgcc-13-dev (= 13.2.0-7ubuntu1), libgcc-s1 (= 13.2.0-7ubuntu1), libgcrypt20 (= 1.10.2-3ubuntu1), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgfortran-13-dev (= 13.2.0-7ubuntu1), libgfortran5 (= 13.2.0-7ubuntu1), libglib2.0-0 (= 2.78.1-4), libgmp10 (= 2:6.3.0+dfsg-2ubuntu4), libgnutls30 (= 3.8.1-4ubuntu6), libgomp1 (= 13.2.0-7ubuntu1), libgpg-error0 (= 1.47-3), libgprofng0 (= 2.41-7ubuntu1), libgraphite2-3 (= 1.3.14-1build2), libgssapi-krb5-2 (= 1.20.1-5build1), libharfbuzz0b (= 8.0.1-1), libhogweed6 (= 3.9.1-2), libhttp-date-perl (= 6.06-1), libhttp-message-perl (= 6.44-2ubuntu1), libhwasan0 (= 13.2.0-7ubuntu1), libice6 (= 2:1.0.10-1build2), libicu-dev (= 72.1-3ubuntu3), libicu72 (= 72.1-3ubuntu3), libidn2-0 (= 2.3.4-1build1), libio-html-perl (= 1.004-3), libisl23 (= 0.26-3), libitm1 (= 13.2.0-7ubuntu1), libjansson4 (= 2.14-2), libjbig0 (= 2.1-6.1ubuntu1), libjpeg-dev (= 8c-2ubuntu11), libjpeg-turbo8 (= 2.1.5-2ubuntu1), libjpeg-turbo8-dev (= 2.1.5-2ubuntu1), libjpeg8 (= 8c-2ubuntu11), libjpeg8-dev (= 8c-2ubuntu11), libjs-bootstrap (= 3.4.1+dfsg-3), libjs-bootstrap4 (= 4.6.1+dfsg1-4), libjs-d3 (= 3.5.17-4), libjs-es5-shim (= 4.6.7-2), libjs-highlight.js (= 9.18.5+dfsg1-2), libjs-jquery (= 3.6.1+dfsg+~3.5.14-1), libjs-jquery-datatables (= 1.11.5+dfsg-2), libjs-jquery-selectize.js (= 0.12.6+dfsg-1.1), libjs-jquery-ui (= 1.13.2+dfsg-1), libjs-json (= 0~20221030+~1.0.8-1), libjs-mathjax (= 2.7.9+dfsg-1), libjs-microplugin.js (= 0.0.3+dfsg-1.1), libjs-modernizr (= 2.6.2+ds1-5), libjs-popper.js (= 1.16.1+ds-6), libjs-prettify (= 2015.12.04+dfsg-1.1), libjs-sifter.js (= 0.6.0+dfsg-3), libjs-twitter-bootstrap-datepicker (= 1.3.1+dfsg1-4.1), libk5crypto3 (= 1.20.1-5build1), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-5build1), libkrb5support0 (= 1.20.1-5build1), liblapack-dev (= 3.11.0-2build1), liblapack3 (= 3.11.0-2build1), libldap2 (= 2.6.6+dfsg-1~exp1ubuntu1), liblerc4 (= 4.0.0+ds-2ubuntu2), liblsan0 (= 13.2.0-7ubuntu1), liblua5.3-0 (= 5.3.6-2), liblwp-mediatypes-perl (= 6.04-2), liblz4-1 (= 1.9.4-1), liblzma-dev (= 5.4.5-0.1), liblzma5 (= 5.4.5-0.1), libmagic-mgc (= 1:5.45-2), libmagic1 (= 1:5.45-2), libmd0 (= 1.1.0-1), libmodule-implementation-perl (= 0.09-2), libmodule-runtime-conflicts-perl (= 0.003-2), libmodule-runtime-perl (= 0.016-2), libmoose-perl (= 2.2206-1), libmount1 (= 2.39.2-6ubuntu1), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.1-1), libmro-compat-perl (= 0.15-2), libnamespace-clean-perl (= 0.27-2), libncurses-dev (= 6.4+20231121-1build1), libncurses6 (= 6.4+20231121-1build1), libncursesw6 (= 6.4+20231121-1build1), libnettle8 (= 3.9.1-2), libnghttp2-14 (= 1.58.0-1), libnsl-dev (= 1.3.0-3), libnsl2 (= 1.3.0-3), libp11-kit0 (= 0.25.0-4ubuntu1), libpackage-deprecationmanager-perl (= 0.18-1), libpackage-stash-perl (= 0.40-1), libpackage-stash-xs-perl (= 0.30-1build1), libpam-modules (= 1.5.2-9.1ubuntu1), libpam-modules-bin (= 1.5.2-9.1ubuntu1), libpam-runtime (= 1.5.2-9.1ubuntu1), libpam0g (= 1.5.2-9.1ubuntu1), libpango-1.0-0 (= 1.51.0+ds-3), libpangocairo-1.0-0 (= 1.51.0+ds-3), libpangoft2-1.0-0 (= 1.51.0+ds-3), libpaper-utils (= 1.1.29), libpaper1 (= 1.1.29), libparams-classify-perl (= 0.015-2build2), libparams-util-perl (= 1.102-2), libpcre2-16-0 (= 10.42-4), libpcre2-32-0 (= 10.42-4), libpcre2-8-0 (= 10.42-4), libpcre2-dev (= 10.42-4), libpcre2-posix3 (= 10.42-4), libperl5.36 (= 5.36.0-10ubuntu1), libpipeline1 (= 1.5.7-1), libpixman-1-0 (= 0.42.2-1), libpkgconf3 (= 1.8.1-2), libpng-dev (= 1.6.40-2), libpng16-16 (= 1.6.40-2), libpsl5 (= 0.21.2-1build1), libpython3-stdlib (= 3.11.4-5ubuntu1), libpython3.11-minimal (= 3.11.6-3), libpython3.11-stdlib (= 3.11.6-3), libquadmath0 (= 13.2.0-7ubuntu1), libreadline-dev (= 8.2-3), libreadline8 (= 8.2-3), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build4), libsasl2-2 (= 2.1.28+dfsg1-4), libsasl2-modules-db (= 2.1.28+dfsg1-4), libseccomp2 (= 2.5.4-2ubuntu1), libselinux1 (= 3.5-1build2), libsframe1 (= 2.41-7ubuntu1), libsharpyuv0 (= 1.3.2-0.3), libsm6 (= 2:1.2.3-1build2), libsmartcols1 (= 2.39.2-6ubuntu1), libsqlite3-0 (= 3.44.2-1), libssh-4 (= 0.10.5-3ubuntu1), libssl3 (= 3.0.10-1ubuntu3), libstdc++-13-dev (= 13.2.0-7ubuntu1), libstdc++6 (= 13.2.0-7ubuntu1), libsub-exporter-perl (= 0.990-1), libsub-exporter-progressive-perl (= 0.001013-3), libsub-identify-perl (= 0.14-3), libsub-install-perl (= 0.929-1), libsub-name-perl (= 0.27-1), libsub-override-perl (= 0.09-4), libswitch-perl (= 2.17-3), libsystemd0 (= 253.5-1ubuntu7), libtasn1-6 (= 4.19.0-3), libtcl8.6 (= 8.6.13+dfsg-2), libthai-data (= 0.1.29-1build1), libthai0 (= 0.1.29-1build1), libtiff6 (= 4.5.1+git230720-1ubuntu1), libtimedate-perl (= 2.3300-2), libtinfo6 (= 6.4+20231121-1build1), libtirpc-common (= 1.3.4+ds-1), libtirpc-dev (= 1.3.4+ds-1), libtirpc3 (= 1.3.4+ds-1), libtk8.6 (= 8.6.13-2), libtool (= 2.4.7-7), libtry-tiny-perl (= 0.31-2), libtsan2 (= 13.2.0-7ubuntu1), libubsan1 (= 13.2.0-7ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 253.5-1ubuntu7), libunistring5 (= 1.1-2), liburi-perl (= 5.21-1), libuuid1 (= 2.39.2-6ubuntu1), libuv1 (= 1.46.0-2), libvariable-magic-perl (= 0.63-1), libwebp7 (= 1.3.2-0.3), libwww-curl-perl (= 4.17-10), libwww-curl-simple-perl (= 0.100191-3), libx11-6 (= 2:1.8.7-1), libx11-data (= 2:1.8.7-1), libxau6 (= 1:1.0.9-1build5), libxcb-render0 (= 1.15-1), libxcb-shm0 (= 1.15-1), libxcb1 (= 1.15-1), libxdmcp6 (= 1:1.1.3-0ubuntu5), libxext6 (= 2:1.3.4-1build1), libxft2 (= 2.3.6-1), libxml2 (= 2.9.14+dfsg-1.3build2), libxmuu1 (= 2:1.1.3-3), libxrender1 (= 1:0.9.10-1.1), libxss1 (= 1:1.2.3-1build2), libxt6 (= 1:1.2.1-1.1), libyaml-0-2 (= 0.2.5-1), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.6.0-13.13), littler (= 0.3.18-2), login (= 1:4.13+dfsg1-1ubuntu1), lto-disabled-list (= 44), m4 (= 1.4.19-4), make (= 4.3-4.1build1), man-db (= 2.12.0-1), mawk (= 1.3.4.20231102-1), media-types (= 10.1.0), ncurses-base (= 6.4+20231121-1build1), ncurses-bin (= 6.4+20231121-1build1), node-bootstrap-sass (= 3.4.3-2), node-html5shiv (= 3.7.3+dfsg-5), node-normalize.css (= 8.0.1-5), openssl (= 3.0.10-1ubuntu3), pandoc (= 2.17.1.1-3ubuntu1), pandoc-data (= 2.17.1.1-3ubuntu1), patch (= 2.7.6-7build2), perl (= 5.36.0-10ubuntu1), perl-base (= 5.36.0-10ubuntu1), perl-modules-5.36 (= 5.36.0-10ubuntu1), pkg-config (= 1.8.1-2), pkgconf (= 1.8.1-2), pkgconf-bin (= 1.8.1-2), po-debconf (= 1.0.21+nmu1), python3 (= 3.11.4-5ubuntu1), python3-minimal (= 3.11.4-5ubuntu1), python3.11 (= 3.11.6-3), python3.11-minimal (= 3.11.6-3), r-base-core (= 4.3.2-1), r-base-dev (= 4.3.2-1), r-cran-abind (= 1.4-5-2), r-cran-askpass (= 1.2.0-1), r-cran-base64enc (= 0.1-3-3), r-cran-bh (= 1.81.0-1), r-cran-bitops (= 1.0-7-1), r-cran-bslib (= 0.6.0+dfsg-1), r-cran-cachem (= 1.0.8-1), r-cran-catools (= 1.18.2-1), r-cran-cli (= 3.6.1-1), r-cran-cluster (= 2.1.4-1), r-cran-codetools (= 0.2-19-1), r-cran-colorspace (= 2.1-0+dfsg-1), r-cran-colourpicker (= 1.3.0+dfsg-1), r-cran-commonmark (= 1.9.0-1), r-cran-cowplot (= 1.1.1+dfsg-2), r-cran-cpp11 (= 0.4.6-1), r-cran-crayon (= 1.5.2-1), r-cran-crosstalk (= 1.2.1+dfsg-1), r-cran-curl (= 5.1.0+dfsg-1), r-cran-data.table (= 1.14.8+dfsg2-1), r-cran-deldir (= 2.0-2-1), r-cran-digest (= 0.6.33-1), r-cran-dotcall64 (= 1.1-0-1), r-cran-dplyr (= 1.1.4-1), r-cran-dqrng (= 0.3.1+dfsg-1), r-cran-ellipsis (= 0.3.2-2), r-cran-evaluate (= 0.23-1), r-cran-fansi (= 1.0.5-1), r-cran-farver (= 2.1.1-1), r-cran-fastdummies (= 1.7.3-2), r-cran-fastmap (= 1.1.1-1), r-cran-fitdistrplus (= 1.1-11-1), r-cran-fnn (= 1.1.3.2-1), r-cran-fontawesome (= 0.5.2-1), r-cran-fs (= 1.6.3+dfsg-1), r-cran-future (= 1.33.0+dfsg-1), r-cran-future.apply (= 1.11.0+dfsg-1), r-cran-gdata (= 3.0.0-1), r-cran-generics (= 0.1.3-1), r-cran-ggplot2 (= 3.4.4+dfsg-1), r-cran-ggrepel (= 0.9.4-1), r-cran-ggridges (= 0.5.4-2), r-cran-globals (= 0.16.2-1), r-cran-glue (= 1.6.2-1), r-cran-goftest (= 1.2-3-1), r-cran-gplots (= 3.1.3-1), r-cran-gridextra (= 2.3-3build1), r-cran-gtable (= 0.3.4+dfsg-1), r-cran-gtools (= 3.9.4-1), r-cran-here (= 1.0.1-2), r-cran-highr (= 0.10+dfsg-1), r-cran-htmltools (= 0.5.7-1), r-cran-htmlwidgets (= 1.6.3+dfsg-1), r-cran-httpuv (= 1.6.12+dfsg-1), r-cran-httr (= 1.4.7+dfsg-1), r-cran-ica (= 1.0-3-1), r-cran-igraph (= 1.5.1-1), r-cran-irlba (= 2.3.5.1-2), r-cran-isoband (= 0.2.7-1), r-cran-jquerylib (= 0.1.4+dfsg-4), r-cran-jsonlite (= 1.8.7+dfsg-1), r-cran-kernsmooth (= 2.23-22-1), r-cran-knitr (= 1.45+dfsg-1), r-cran-labeling (= 0.4.3-1), r-cran-later (= 1.3.1+dfsg-1), r-cran-lattice (= 0.22-5-1), r-cran-lazyeval (= 0.2.2-1build1), r-cran-leiden (= 0.4.3.1+dfsg-1), r-cran-lifecycle (= 1.0.4+dfsg-1), r-cran-listenv (= 0.9.0+dfsg-1), r-cran-littler (= 0.3.18-2), r-cran-lmtest (= 0.9.40-1), r-cran-magrittr (= 2.0.3-1), r-cran-mass (= 7.3-60-2), r-cran-matrix (= 1.6-3-1), r-cran-matrixstats (= 1.1.0-1), r-cran-memoise (= 2.0.1-1), r-cran-mgcv (= 1.9-0-1), r-cran-mime (= 0.12-1), r-cran-miniui (= 0.1.1.1-3build1), r-cran-munsell (= 0.5.0-2build1), r-cran-nlme (= 3.1.163-1), r-cran-openssl (= 2.1.1+dfsg-2), r-cran-parallelly (= 1.36.0-1), r-cran-patchwork (= 1.1.3-1), r-cran-pbapply (= 1.7-2-1), r-cran-pillar (= 1.9.0+dfsg-1), r-cran-pkgconfig (= 2.0.3-2build1), r-cran-pkgkitten (= 0.2.3-1), r-cran-plotly (= 4.10.3+dfsg-1), r-cran-plyr (= 1.8.9-1), r-cran-png (= 0.1-8-1), r-cran-polyclip (= 1.10-6-1), r-cran-progressr (= 0.14.0-1), r-cran-promises (= 1.2.1+dfsg-1), r-cran-purrr (= 1.0.2-1), r-cran-r6 (= 2.5.1-1), r-cran-rann (= 2.6.1-1build2), r-cran-rappdirs (= 0.3.3-1), r-cran-rcolorbrewer (= 1.1-3-1build1), r-cran-rcpp (= 1.0.11-1), r-cran-rcppannoy (= 0.0.21-2), r-cran-rcpparmadillo (= 0.12.6.6.0-1), r-cran-rcppeigen (= 0.3.3.9.4-1), r-cran-rcpphnsw (= 0.5.0+ds-1), r-cran-rcppprogress (= 0.4.2-2build1), r-cran-rcpptoml (= 0.2.2+dfsg-1), r-cran-reshape2 (= 1.4.4-2build1), r-cran-reticulate (= 1.34.0+dfsg-1), r-cran-rlang (= 1.1.2-1), r-cran-rmarkdown (= 2.25+dfsg-1), r-cran-rocr (= 1.0-11-2build1), r-cran-rprojroot (= 2.0.4-1), r-cran-rspectra (= 0.16-1-1), r-cran-rtsne (= 0.16-1), r-cran-sass (= 0.4.7+dfsg-1), r-cran-scales (= 1.2.1-1), r-cran-scattermore (= 1.2-1), r-cran-sctransform (= 0.4.1-1), r-cran-seuratobject (= 5.0.1-1), r-cran-shiny (= 1.8.0+dfsg-1), r-cran-shinyjs (= 2.1.0-1), r-cran-sitmo (= 2.0.2-1), r-cran-sourcetools (= 0.1.7-1-1), r-cran-sp (= 1:2.1-1+dfsg-1), r-cran-spam (= 2.10-0-1), r-cran-spatstat.data (= 3.0-3-1), r-cran-spatstat.explore (= 3.2-5-1), r-cran-spatstat.geom (= 3.2-7-1), r-cran-spatstat.random (= 3.2-1-1), r-cran-spatstat.sparse (= 3.0-3-1), r-cran-spatstat.utils (= 3.0-4-1), r-cran-stringi (= 1.8.2-1), r-cran-stringr (= 1.5.1-1), r-cran-survival (= 3.5-7-1), r-cran-sys (= 3.4.2-1), r-cran-tensor (= 1.5-4), r-cran-tibble (= 3.2.1+dfsg-2), r-cran-tidyr (= 1.3.0-1), r-cran-tidyselect (= 1.2.0+dfsg-1), r-cran-tinytex (= 0.49-1), r-cran-utf8 (= 1.2.4-1), r-cran-uwot (= 0.1.16-2), r-cran-vctrs (= 0.6.4-1), r-cran-viridislite (= 0.4.2-2), r-cran-withr (= 2.5.0-1), r-cran-xfun (= 0.41+dfsg-1), r-cran-xtable (= 1:1.8-4-2), r-cran-yaml (= 2.3.7-1), r-cran-zoo (= 1.8-12-2), readline-common (= 8.2-3), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.9-1), sensible-utils (= 0.0.20), sysvinit-utils (= 3.08-3ubuntu1), tar (= 1.34+dfsg-1.2ubuntu1), tzdata (= 2023c-9ubuntu1), ucf (= 3.0043+nmu1), unzip (= 6.0-28ubuntu1), util-linux (= 2.39.2-6ubuntu1), x11-common (= 1:7.7+23ubuntu2), xauth (= 1:1.1.2-1), xdg-utils (= 1.1.3-4.1ubuntu3), xz-utils (= 5.4.5-0.1), zip (= 3.0-13), zlib1g (= 1:1.3.dfsg-3ubuntu1), zlib1g-dev (= 1:1.3.dfsg-3ubuntu1) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1700841856" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-cran-seurat_5.0.1-1_amd64.deb ------------------------------- new Debian package, version 2.0. size 3543126 bytes: control archive=2971 bytes. 2321 bytes, 20 lines control 4958 bytes, 56 lines md5sums Package: r-cran-seurat Version: 5.0.1-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian R Packages Maintainers Installed-Size: 4087 Depends: r-api-4.0, r-cran-seuratobject (>= 5.0.0), r-cran-cluster, r-cran-cowplot, r-cran-fastdummies, r-cran-fitdistrplus, r-cran-future, r-cran-future.apply, r-cran-generics (>= 0.1.3), r-cran-ggplot2 (>= 3.3.0), r-cran-ggrepel, r-cran-ggridges, r-cran-httr, r-cran-ica, r-cran-igraph, r-cran-irlba, r-cran-jsonlite, r-cran-kernsmooth, r-cran-leiden (>= 0.3.1), r-cran-lifecycle, r-cran-lmtest, r-cran-mass, r-cran-matrix (>= 1.5-0), r-cran-matrixstats, r-cran-miniui, r-cran-patchwork, r-cran-pbapply, r-cran-plotly (>= 4.9.0), r-cran-png, r-cran-progressr, r-cran-purrr, r-cran-rann, r-cran-rcolorbrewer, r-cran-rcpp (>= 1.0.7), r-cran-rcppannoy (>= 0.0.18), r-cran-rcpphnsw, r-cran-reticulate, r-cran-rlang, r-cran-rocr, r-cran-rspectra, r-cran-rtsne, r-cran-scales, r-cran-scattermore (>= 1.2), r-cran-sctransform (>= 0.4.1), r-cran-shiny, r-cran-spatstat.explore, r-cran-spatstat.geom, r-cran-tibble, r-cran-uwot (>= 0.1.10), r-cran-rcppeigen, r-cran-rcppprogress, libc6 (>= 2.38), libgcc-s1 (>= 3.0), libstdc++6 (>= 13.1) Recommends: r-cran-ape, r-cran-rsvd, r-cran-testthat, r-cran-hdf5r, r-bioc-s4vectors, r-bioc-summarizedexperiment, r-bioc-singlecellexperiment, r-bioc-deseq2, r-bioc-biocgenerics, r-bioc-genomicranges, r-bioc-genomeinfodb, r-bioc-iranges, r-bioc-rtracklayer, r-bioc-monocle, r-bioc-biobase, r-cran-vgam, r-bioc-limma, r-cran-metap, r-cran-mixtools, r-cran-ggrastr, r-cran-data.table, r-cran-r.utils, r-bioc-delayedarray Section: gnu-r Priority: optional Homepage: https://cran.r-project.org/package=Seurat Description: Tools for Single Cell Genomics A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) , Macosko E, Basu A, Satija R, et al (2015) , and Butler A and Satija R (2017) for more details. drwxr-xr-x root/root 0 2023-11-24 16:04 ./ drwxr-xr-x root/root 0 2023-11-24 16:04 ./usr/ drwxr-xr-x root/root 0 2023-11-24 16:04 ./usr/lib/ drwxr-xr-x root/root 0 2023-11-24 16:04 ./usr/lib/R/ drwxr-xr-x root/root 0 2023-11-24 16:04 ./usr/lib/R/site-library/ drwxr-xr-x root/root 0 2023-11-24 16:04 ./usr/lib/R/site-library/Seurat/ -rw-r--r-- root/root 3914 2023-11-24 16:04 ./usr/lib/R/site-library/Seurat/CITATION -rw-r--r-- root/root 6946 2023-11-24 16:04 ./usr/lib/R/site-library/Seurat/DESCRIPTION -rw-r--r-- root/root 15437 2023-11-24 16:04 ./usr/lib/R/site-library/Seurat/INDEX drwxr-xr-x root/root 0 2023-11-24 16:04 ./usr/lib/R/site-library/Seurat/Meta/ -rw-r--r-- root/root 9728 2023-11-24 16:04 ./usr/lib/R/site-library/Seurat/Meta/Rd.rds -rw-r--r-- root/root 125 2023-11-24 16:04 ./usr/lib/R/site-library/Seurat/Meta/data.rds -rw-r--r-- root/root 123 2023-11-24 16:04 ./usr/lib/R/site-library/Seurat/Meta/features.rds -rw-r--r-- root/root 9343 2023-11-24 16:04 ./usr/lib/R/site-library/Seurat/Meta/hsearch.rds -rw-r--r-- root/root 4898 2023-11-24 16:04 ./usr/lib/R/site-library/Seurat/Meta/links.rds -rw-r--r-- root/root 6586 2023-11-24 16:04 ./usr/lib/R/site-library/Seurat/Meta/nsInfo.rds -rw-r--r-- root/root 3709 2023-11-24 16:04 ./usr/lib/R/site-library/Seurat/Meta/package.rds -rw-r--r-- root/root 25547 2023-11-24 16:04 ./usr/lib/R/site-library/Seurat/NAMESPACE -rw-r--r-- root/root 32326 2023-11-24 16:04 ./usr/lib/R/site-library/Seurat/NEWS.md drwxr-xr-x root/root 0 2023-11-24 16:04 ./usr/lib/R/site-library/Seurat/R/ -rw-r--r-- root/root 1058 2023-11-24 16:04 ./usr/lib/R/site-library/Seurat/R/Seurat -rw-r--r-- root/root 1741425 2023-11-24 16:04 ./usr/lib/R/site-library/Seurat/R/Seurat.rdb -rw-r--r-- root/root 10048 2023-11-24 16:04 ./usr/lib/R/site-library/Seurat/R/Seurat.rdx drwxr-xr-x root/root 0 2023-11-24 16:04 ./usr/lib/R/site-library/Seurat/data/ -rw-r--r-- root/root 1051 2023-11-24 16:04 ./usr/lib/R/site-library/Seurat/data/Rdata.rdb -rw-r--r-- root/root 106 2023-11-24 16:04 ./usr/lib/R/site-library/Seurat/data/Rdata.rds -rw-r--r-- root/root 165 2023-11-24 16:04 ./usr/lib/R/site-library/Seurat/data/Rdata.rdx drwxr-xr-x root/root 0 2023-11-24 16:04 ./usr/lib/R/site-library/Seurat/extdata/ -rw-r--r-- root/root 39888 2023-11-24 16:04 ./usr/lib/R/site-library/Seurat/extdata/pbmc_raw.txt drwxr-xr-x root/root 0 2023-11-24 16:04 ./usr/lib/R/site-library/Seurat/help/ -rw-r--r-- root/root 13932 2023-11-24 16:04 ./usr/lib/R/site-library/Seurat/help/AnIndex -rw-r--r-- root/root 604313 2023-11-24 16:04 ./usr/lib/R/site-library/Seurat/help/Seurat.rdb -rw-r--r-- root/root 5364 2023-11-24 16:04 ./usr/lib/R/site-library/Seurat/help/Seurat.rdx -rw-r--r-- root/root 3835 2023-11-24 16:04 ./usr/lib/R/site-library/Seurat/help/aliases.rds -rw-r--r-- root/root 2223 2023-11-24 16:04 ./usr/lib/R/site-library/Seurat/help/paths.rds drwxr-xr-x root/root 0 2023-11-24 16:04 ./usr/lib/R/site-library/Seurat/html/ -rw-r--r-- root/root 53286 2023-11-24 16:04 ./usr/lib/R/site-library/Seurat/html/00Index.html -rw-r--r-- root/root 1844 2023-11-24 16:04 ./usr/lib/R/site-library/Seurat/html/R.css drwxr-xr-x root/root 0 2023-11-24 16:04 ./usr/lib/R/site-library/Seurat/libs/ -rw-r--r-- root/root 413160 2023-11-24 16:04 ./usr/lib/R/site-library/Seurat/libs/Seurat.so drwxr-xr-x root/root 0 2023-11-24 16:04 ./usr/share/ drwxr-xr-x root/root 0 2023-11-24 16:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-11-24 16:04 ./usr/share/doc/r-cran-seurat/ -rw-r--r-- root/root 720 2023-11-24 16:04 ./usr/share/doc/r-cran-seurat/changelog.Debian.gz -rw-r--r-- root/root 1353 2023-11-24 16:04 ./usr/share/doc/r-cran-seurat/copyright -rw-r--r-- root/root 702 2023-11-24 16:04 ./usr/share/doc/r-cran-seurat/run-unit-test drwxr-xr-x root/root 0 2023-11-16 20:48 ./usr/share/doc/r-cran-seurat/tests/ drwxr-xr-x root/root 0 2023-11-24 16:04 ./usr/share/doc/r-cran-seurat/tests/testdata/ -rw-r--r-- root/root 1360 2023-11-16 20:48 ./usr/share/doc/r-cran-seurat/tests/testdata/barcodes.tsv drwxr-xr-x root/root 0 2023-11-24 16:04 ./usr/share/doc/r-cran-seurat/tests/testdata/cr3.0/ -rw-r--r-- root/root 74 2023-11-24 16:04 ./usr/share/doc/r-cran-seurat/tests/testdata/cr3.0/barcodes.tsv.gz -rw-r--r-- root/root 150 2023-11-24 16:04 ./usr/share/doc/r-cran-seurat/tests/testdata/cr3.0/features.tsv.gz -rw-r--r-- root/root 177 2023-11-24 16:04 ./usr/share/doc/r-cran-seurat/tests/testdata/cr3.0/matrix.mtx.gz -rw-r--r-- root/root 1025 2023-11-16 20:48 ./usr/share/doc/r-cran-seurat/tests/testdata/genes.tsv.gz -rw-r--r-- root/root 13336 2023-11-16 20:48 ./usr/share/doc/r-cran-seurat/tests/testdata/matrix.mtx.gz -rw-r--r-- root/root 368586 2023-11-16 20:48 ./usr/share/doc/r-cran-seurat/tests/testdata/nbt_small.Rdata.gz drwxr-xr-x root/root 0 2023-11-24 16:04 ./usr/share/doc/r-cran-seurat/tests/testdata/visium/ -rw-r--r-- root/root 100357 2023-11-16 20:48 ./usr/share/doc/r-cran-seurat/tests/testdata/visium/filtered_feature_bc_matrix.h5.gz -rw-r--r-- root/root 78902 2023-11-16 20:48 ./usr/share/doc/r-cran-seurat/tests/testdata/visium/raw_probe_bc_matrix.h5.gz drwxr-xr-x root/root 0 2023-11-24 16:04 ./usr/share/doc/r-cran-seurat/tests/testdata/visium/spatial/ -rw-r--r-- root/root 164 2023-11-16 20:48 ./usr/share/doc/r-cran-seurat/tests/testdata/visium/spatial/scalefactors_json.json -rw-r--r-- root/root 457479 2023-11-16 20:48 ./usr/share/doc/r-cran-seurat/tests/testdata/visium/spatial/tissue_lowres_image.png -rw-r--r-- root/root 57944 2023-11-16 20:48 ./usr/share/doc/r-cran-seurat/tests/testdata/visium/spatial/tissue_positions_list.csv.gz -rw-r--r-- root/root 287 2023-11-16 20:48 ./usr/share/doc/r-cran-seurat/tests/testthat.R drwxr-xr-x root/root 0 2023-11-24 16:04 ./usr/share/doc/r-cran-seurat/tests/testthat/ -rw-r--r-- root/root 1976 2023-11-16 20:48 ./usr/share/doc/r-cran-seurat/tests/testthat/test_data_manipulation.R.gz -rw-r--r-- root/root 4023 2023-11-16 20:48 ./usr/share/doc/r-cran-seurat/tests/testthat/test_differential_expression.R.gz -rw-r--r-- root/root 2435 2023-11-16 20:48 ./usr/share/doc/r-cran-seurat/tests/testthat/test_dimensional_reduction.R -rw-r--r-- root/root 1956 2023-11-16 20:48 ./usr/share/doc/r-cran-seurat/tests/testthat/test_integratedata.R.gz -rw-r--r-- root/root 2081 2023-11-16 20:48 ./usr/share/doc/r-cran-seurat/tests/testthat/test_integration.R.gz -rw-r--r-- root/root 1766 2023-11-16 20:48 ./usr/share/doc/r-cran-seurat/tests/testthat/test_load_10X.R -rw-r--r-- root/root 1223 2023-11-16 20:48 ./usr/share/doc/r-cran-seurat/tests/testthat/test_modularity_optimizer.R.gz -rw-r--r-- root/root 991 2023-11-16 20:48 ./usr/share/doc/r-cran-seurat/tests/testthat/test_objects.R -rw-r--r-- root/root 3952 2023-11-16 20:48 ./usr/share/doc/r-cran-seurat/tests/testthat/test_preprocessing.R.gz -rw-r--r-- root/root 1516 2023-11-16 20:48 ./usr/share/doc/r-cran-seurat/tests/testthat/test_read_mtx.R -rw-r--r-- root/root 1644 2023-11-16 20:48 ./usr/share/doc/r-cran-seurat/tests/testthat/test_transferdata.R.gz -rw-r--r-- root/root 1679 2023-11-16 20:48 ./usr/share/doc/r-cran-seurat/tests/testthat/test_utilities.R.gz -rw-r--r-- root/root 895 2023-11-16 20:48 ./usr/share/doc/r-cran-seurat/tests/testthat/test_visualization.R +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 18924 Build-Time: 96 Distribution: noble-proposed Host Architecture: amd64 Install-Time: 30 Job: r-cran-seurat_5.0.1-1.dsc Machine Architecture: amd64 Package: r-cran-seurat Package-Time: 127 Source-Version: 5.0.1-1 Space: 18924 Status: successful Version: 5.0.1-1 -------------------------------------------------------------------------------- Finished at 2023-11-28T18:30:48Z Build needed 00:02:07, 18924k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-27029617 Scanning for processes to kill in build PACKAGEBUILD-27029617