https://launchpad.net/ubuntu/+source/r-cran-stanheaders/2.21.0-1-1/+build/18604936 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lgw01-amd64-023 4.4.0-171-generic #200-Ubuntu SMP Tue Dec 3 11:04:55 UTC 2019 x86_64 Buildd toolchain package versions: launchpad-buildd_186 python-lpbuildd_186 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.7 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 24 Jan 05:13:18 ntpdate[1909]: adjust time server 10.211.37.1 offset -0.001866 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18604936 --image-type chroot /home/buildd/filecache-default/e96c25c651525abc9f0cabeb95ea71010abf4ecb Creating target for build PACKAGEBUILD-18604936 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18604936 Starting target for build PACKAGEBUILD-18604936 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18604936 'deb http://ftpmaster.internal/ubuntu focal main universe' 'deb http://ftpmaster.internal/ubuntu focal-security main universe' 'deb http://ftpmaster.internal/ubuntu focal-updates main universe' 'deb http://ftpmaster.internal/ubuntu focal-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-18604936 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18604936 Updating target for build PACKAGEBUILD-18604936 Get:1 http://ftpmaster.internal/ubuntu focal InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu focal-security InRelease [79.7 kB] Get:3 http://ftpmaster.internal/ubuntu focal-updates InRelease [79.7 kB] Get:4 http://ftpmaster.internal/ubuntu focal-proposed InRelease [255 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main amd64 Packages [968 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main Translation-en [501 kB] Get:7 http://ftpmaster.internal/ubuntu focal/universe amd64 Packages [8571 kB] Get:8 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5141 kB] Get:9 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 Packages [105 kB] Get:10 http://ftpmaster.internal/ubuntu focal-proposed/main Translation-en [42.0 kB] Get:11 http://ftpmaster.internal/ubuntu focal-proposed/universe amd64 Packages [458 kB] Get:12 http://ftpmaster.internal/ubuntu focal-proposed/universe Translation-en [225 kB] Fetched 16.7 MB in 3s (5621 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libctf-nobfd0 libctf0 libffi7 libhogweed5 libisl22 libnettle7 libperl5.30 perl-modules-5.30 The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-common binutils-x86-64-linux-gnu bsdutils bzip2 cpp-9 debianutils fdisk g++-9 gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv gzip hostname libacl1 libapparmor1 libapt-pkg5.90 libasan5 libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcryptsetup12 libdebconfclient0 libdevmapper1.02.1 libfdisk1 libgcc-9-dev libgcc1 libgcrypt20 libgnutls30 libgomp1 libgpg-error0 libitm1 libjson-c4 libkmod2 liblockfile-bin liblockfile1 liblsan0 liblz4-1 libmount1 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libquadmath0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libssl1.1 libstdc++-9-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libtsan0 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev login lsb-base mount ncurses-base ncurses-bin openssl passwd perl perl-base sensible-utils systemd systemd-sysv sysvinit-utils util-linux 100 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. Need to get 73.3 MB of archives. After this operation, 50.8 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu focal/main amd64 libc6-dev amd64 2.30-0ubuntu3 [2549 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main amd64 libc-dev-bin amd64 2.30-0ubuntu3 [71.8 kB] Get:3 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 linux-libc-dev amd64 5.4.0-12.15 [1103 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main amd64 libisl22 amd64 0.22-2 [592 kB] Get:5 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libcc1-0 amd64 9.2.1-25ubuntu1 [48.9 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main amd64 libctf-nobfd0 amd64 2.33.90.20200122-1ubuntu2 [46.7 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main amd64 libctf0 amd64 2.33.90.20200122-1ubuntu2 [46.6 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main amd64 binutils-x86-64-linux-gnu amd64 2.33.90.20200122-1ubuntu2 [1615 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main amd64 libbinutils amd64 2.33.90.20200122-1ubuntu2 [474 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main amd64 binutils-common amd64 2.33.90.20200122-1ubuntu2 [206 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main amd64 binutils amd64 2.33.90.20200122-1ubuntu2 [3388 B] Get:12 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 gcc-9-base amd64 9.2.1-25ubuntu1 [19.1 kB] Get:13 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libgcc1 amd64 1:9.2.1-25ubuntu1 [40.8 kB] Get:14 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libgomp1 amd64 9.2.1-25ubuntu1 [89.3 kB] Get:15 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libitm1 amd64 9.2.1-25ubuntu1 [28.1 kB] Get:16 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libatomic1 amd64 9.2.1-25ubuntu1 [9220 B] Get:17 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libasan5 amd64 9.2.1-25ubuntu1 [395 kB] Get:18 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 liblsan0 amd64 9.2.1-25ubuntu1 [139 kB] Get:19 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libtsan0 amd64 9.2.1-25ubuntu1 [301 kB] Get:20 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libubsan1 amd64 9.2.1-25ubuntu1 [130 kB] Get:21 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libquadmath0 amd64 9.2.1-25ubuntu1 [146 kB] Get:22 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 g++-9 amd64 9.2.1-25ubuntu1 [11.0 MB] Get:23 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libstdc++-9-dev amd64 9.2.1-25ubuntu1 [1711 kB] Get:24 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libgcc-9-dev amd64 9.2.1-25ubuntu1 [2361 kB] Get:25 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 gcc-9 amd64 9.2.1-25ubuntu1 [10.4 MB] Get:26 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 cpp-9 amd64 9.2.1-25ubuntu1 [9729 kB] Get:27 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libstdc++6 amd64 9.2.1-25ubuntu1 [512 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main amd64 libc6 amd64 2.30-0ubuntu3 [2725 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main amd64 base-files amd64 11ubuntu2 [60.1 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main amd64 debianutils amd64 4.9.1 [85.8 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main amd64 bash amd64 5.0-5ubuntu1 [639 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main amd64 bsdutils amd64 1:2.34-0.1ubuntu5 [63.6 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main amd64 gzip amd64 1.10-0ubuntu4 [95.3 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main amd64 hostname amd64 3.23 [11.4 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main amd64 login amd64 1:4.8-1ubuntu1 [220 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main amd64 ncurses-bin amd64 6.1+20191019-1ubuntu1 [172 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main amd64 perl-modules-5.30 all 5.30.0-9 [2739 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main amd64 libperl5.30 amd64 5.30.0-9 [3950 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main amd64 perl amd64 5.30.0-9 [224 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main amd64 perl-base amd64 5.30.0-9 [1511 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main amd64 bzip2 amd64 1.0.8-2 [34.1 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main amd64 libbz2-1.0 amd64 1.0.8-2 [32.3 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main amd64 libblkid1 amd64 2.34-0.1ubuntu5 [137 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main amd64 libuuid1 amd64 2.34-0.1ubuntu5 [20.5 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main amd64 libfdisk1 amd64 2.34-0.1ubuntu5 [175 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main amd64 libpcre2-8-0 amd64 10.34-7 [197 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main amd64 libselinux1 amd64 3.0-1 [68.7 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main amd64 libmount1 amd64 2.34-0.1ubuntu5 [149 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main amd64 libncurses6 amd64 6.1+20191019-1ubuntu1 [101 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main amd64 libtinfo6 amd64 6.1+20191019-1ubuntu1 [85.9 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main amd64 libncursesw6 amd64 6.1+20191019-1ubuntu1 [132 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main amd64 libsmartcols1 amd64 2.34-0.1ubuntu5 [101 kB] Get:53 http://ftpmaster.internal/ubuntu focal/main amd64 fdisk amd64 2.34-0.1ubuntu5 [120 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main amd64 util-linux amd64 2.34-0.1ubuntu5 [1021 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main amd64 libdebconfclient0 amd64 0.250ubuntu2 [6336 B] Get:56 http://ftpmaster.internal/ubuntu focal/main amd64 base-passwd amd64 3.5.47 [47.7 kB] Get:57 http://ftpmaster.internal/ubuntu focal/main amd64 libc-bin amd64 2.30-0ubuntu3 [625 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main amd64 ncurses-base all 6.1+20191019-1ubuntu1 [17.9 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main amd64 lsb-base all 11.1.0ubuntu2 [12.1 kB] Get:60 http://ftpmaster.internal/ubuntu focal/main amd64 sysvinit-utils amd64 2.96-1ubuntu1 [20.8 kB] Get:61 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libgpg-error0 amd64 1.36-7build1 [58.0 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main amd64 libgcrypt20 amd64 1.8.5-3ubuntu1 [419 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main amd64 liblz4-1 amd64 1.9.2-2 [55.9 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main amd64 systemd-sysv amd64 244.1-0ubuntu2 [9364 B] Get:65 http://ftpmaster.internal/ubuntu focal/main amd64 libacl1 amd64 2.2.53-5ubuntu1 [18.7 kB] Get:66 http://ftpmaster.internal/ubuntu focal/main amd64 libapparmor1 amd64 2.13.3-7ubuntu1 [34.3 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main amd64 libaudit-common all 1:2.8.5-2ubuntu5 [4076 B] Get:68 http://ftpmaster.internal/ubuntu focal/main amd64 libcap-ng0 amd64 0.7.9-2.1 [11.1 kB] Get:69 http://ftpmaster.internal/ubuntu focal/main amd64 libaudit1 amd64 1:2.8.5-2ubuntu5 [39.1 kB] Get:70 http://ftpmaster.internal/ubuntu focal/main amd64 libcap2 amd64 1:2.27-1 [14.1 kB] Get:71 http://ftpmaster.internal/ubuntu focal/main amd64 libudev1 amd64 244.1-0ubuntu2 [76.8 kB] Get:72 http://ftpmaster.internal/ubuntu focal/main amd64 libdevmapper1.02.1 amd64 2:1.02.155-2ubuntu7 [127 kB] Get:73 http://ftpmaster.internal/ubuntu focal/main amd64 libjson-c4 amd64 0.13.1+dfsg-6 [29.2 kB] Get:74 http://ftpmaster.internal/ubuntu focal/main amd64 libssl1.1 amd64 1.1.1d-2ubuntu3 [1316 kB] Get:75 http://ftpmaster.internal/ubuntu focal/main amd64 libcryptsetup12 amd64 2:2.2.2-1ubuntu1 [182 kB] Get:76 http://ftpmaster.internal/ubuntu focal/main amd64 libnettle7 amd64 3.5.1+really3.5.1-2 [114 kB] Get:77 http://ftpmaster.internal/ubuntu focal/main amd64 libhogweed5 amd64 3.5.1+really3.5.1-2 [138 kB] Get:78 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libffi7 amd64 3.3-3 [19.6 kB] Get:79 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libp11-kit0 amd64 0.23.18.1-2build1 [188 kB] Get:80 http://ftpmaster.internal/ubuntu focal/main amd64 libtasn1-6 amd64 4.15.0-2 [37.7 kB] Get:81 http://ftpmaster.internal/ubuntu focal/main amd64 libgnutls30 amd64 3.6.11.1-2ubuntu2 [793 kB] Get:82 http://ftpmaster.internal/ubuntu focal/main amd64 libkmod2 amd64 26-3ubuntu1 [42.9 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main amd64 libpam0g amd64 1.3.1-5ubuntu4 [55.4 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main amd64 libseccomp2 amd64 2.4.2-2ubuntu2 [40.3 kB] Get:85 http://ftpmaster.internal/ubuntu focal/main amd64 mount amd64 2.34-0.1ubuntu5 [115 kB] Get:86 http://ftpmaster.internal/ubuntu focal/main amd64 systemd amd64 244.1-0ubuntu2 [3682 kB] Get:87 http://ftpmaster.internal/ubuntu focal/main amd64 libsystemd0 amd64 244.1-0ubuntu2 [261 kB] Get:88 http://ftpmaster.internal/ubuntu focal/main amd64 libzstd1 amd64 1.4.4+dfsg-1 [237 kB] Get:89 http://ftpmaster.internal/ubuntu focal/main amd64 libapt-pkg5.90 amd64 1.9.7 [852 kB] Get:90 http://ftpmaster.internal/ubuntu focal/main amd64 gpgv amd64 2.2.17-3ubuntu1 [200 kB] Get:91 http://ftpmaster.internal/ubuntu focal/main amd64 apt amd64 1.9.7 [1280 kB] Get:92 http://ftpmaster.internal/ubuntu focal/main amd64 libpam-modules-bin amd64 1.3.1-5ubuntu4 [37.7 kB] Get:93 http://ftpmaster.internal/ubuntu focal/main amd64 libpam-modules amd64 1.3.1-5ubuntu4 [250 kB] Get:94 http://ftpmaster.internal/ubuntu focal/main amd64 libattr1 amd64 1:2.4.48-5 [12.7 kB] Get:95 http://ftpmaster.internal/ubuntu focal/main amd64 libpam-runtime all 1.3.1-5ubuntu4 [37.3 kB] Get:96 http://ftpmaster.internal/ubuntu focal/main amd64 libsepol1 amd64 3.0-1 [252 kB] Get:97 http://ftpmaster.internal/ubuntu focal/main amd64 libsemanage-common all 3.0-1 [9880 B] Get:98 http://ftpmaster.internal/ubuntu focal/main amd64 libsemanage1 amd64 3.0-1 [85.3 kB] Get:99 http://ftpmaster.internal/ubuntu focal/main amd64 passwd amd64 1:4.8-1ubuntu1 [794 kB] Get:100 http://ftpmaster.internal/ubuntu focal/main amd64 sensible-utils all 0.0.12+nmu1 [15.0 kB] Get:101 http://ftpmaster.internal/ubuntu focal/main amd64 libsqlite3-0 amd64 3.30.1-1ubuntu1 [540 kB] Get:102 http://ftpmaster.internal/ubuntu focal/main amd64 openssl amd64 1.1.1d-2ubuntu3 [617 kB] Get:103 http://ftpmaster.internal/ubuntu focal/main amd64 libassuan0 amd64 2.5.3-7ubuntu2 [35.7 kB] Get:104 http://ftpmaster.internal/ubuntu focal/main amd64 gpg amd64 2.2.17-3ubuntu1 [479 kB] Get:105 http://ftpmaster.internal/ubuntu focal/main amd64 gpgconf amd64 2.2.17-3ubuntu1 [124 kB] Get:106 http://ftpmaster.internal/ubuntu focal/main amd64 gpg-agent amd64 2.2.17-3ubuntu1 [232 kB] Get:107 http://ftpmaster.internal/ubuntu focal/main amd64 liblockfile-bin amd64 1.16-1.1 [11.7 kB] Get:108 http://ftpmaster.internal/ubuntu focal/main amd64 liblockfile1 amd64 1.16-1.1 [6680 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 73.3 MB in 9s (8452 kB/s) (Reading database ... 12741 files and directories currently 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Preparing to unpack .../00-libc6-dev_2.30-0ubuntu3_amd64.deb ... Unpacking libc6-dev:amd64 (2.30-0ubuntu3) over (2.30-0ubuntu2) ... Preparing to unpack .../01-libc-dev-bin_2.30-0ubuntu3_amd64.deb ... Unpacking libc-dev-bin (2.30-0ubuntu3) over (2.30-0ubuntu2) ... Preparing to unpack .../02-linux-libc-dev_5.4.0-12.15_amd64.deb ... Unpacking linux-libc-dev:amd64 (5.4.0-12.15) over (5.3.0-18.19) ... Selecting previously unselected package libisl22:amd64. Preparing to unpack .../03-libisl22_0.22-2_amd64.deb ... Unpacking libisl22:amd64 (0.22-2) ... Preparing to unpack .../04-libcc1-0_9.2.1-25ubuntu1_amd64.deb ... Unpacking libcc1-0:amd64 (9.2.1-25ubuntu1) over (9.2.1-9ubuntu2) ... Selecting previously unselected package libctf-nobfd0:amd64. Preparing to unpack .../05-libctf-nobfd0_2.33.90.20200122-1ubuntu2_amd64.deb ... Unpacking libctf-nobfd0:amd64 (2.33.90.20200122-1ubuntu2) ... Selecting previously unselected package libctf0:amd64. 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Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-extra.socket -> /usr/lib/systemd/user/gpg-agent-extra.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-ssh.socket -> /usr/lib/systemd/user/gpg-agent-ssh.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent.socket -> /usr/lib/systemd/user/gpg-agent.socket. Setting up libgcc-9-dev:amd64 (9.2.1-25ubuntu1) ... Setting up perl (5.30.0-9) ... Setting up cpp-9 (9.2.1-25ubuntu1) ... Setting up libc6-dev:amd64 (2.30-0ubuntu3) ... Setting up libcryptsetup12:amd64 (2:2.2.2-1ubuntu1) ... Setting up binutils-x86-64-linux-gnu (2.33.90.20200122-1ubuntu2) ... Setting up libstdc++-9-dev:amd64 (9.2.1-25ubuntu1) ... Setting up systemd (244.1-0ubuntu2) ... Installing new version of config file /etc/dhcp/dhclient-enter-hooks.d/resolved ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from KVM UUID. Setting up binutils (2.33.90.20200122-1ubuntu2) ... Setting up gcc-9 (9.2.1-25ubuntu1) ... Setting up systemd-sysv (244.1-0ubuntu2) ... Setting up g++-9 (9.2.1-25ubuntu1) ... Processing triggers for libc-bin (2.30-0ubuntu3) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-18604936 amd64 focal-proposed -c chroot:build-PACKAGEBUILD-18604936 --arch=amd64 --dist=focal-proposed --nolog -A r-cran-stanheaders_2.21.0-1-1.dsc Initiating build PACKAGEBUILD-18604936 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-171-generic #200-Ubuntu SMP Tue Dec 3 11:04:55 UTC 2019 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-023.buildd +==============================================================================+ | r-cran-stanheaders 2.21.0-1-1 (amd64) 24 Jan 2020 05:14 | +==============================================================================+ Package: r-cran-stanheaders Version: 2.21.0-1-1 Source Version: 2.21.0-1-1 Distribution: focal-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/r-cran-stanheaders-56tR9I/r-cran-stanheaders-2.21.0-1' with '<>' I: NOTICE: Log filtering will replace 'build/r-cran-stanheaders-56tR9I' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-18604936/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-cran-stanheaders_2.21.0-1-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-pbpbiu/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-pbpbiu/apt_archive ./ InRelease Get:2 copy:/<>/resolver-pbpbiu/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-pbpbiu/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-pbpbiu/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-pbpbiu/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (217 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-pbpbiu/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (84.1 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14660 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper-compat (= 12), dh-r, r-base-dev, r-cran-rcppeigen Filtered Build-Depends: debhelper-compat (= 12), dh-r, r-base-dev, r-cran-rcppeigen dpkg-deb: building package 'sbuild-build-depends-r-cran-stanheaders-dummy' in '/<>/resolver-nzXczV/apt_archive/sbuild-build-depends-r-cran-stanheaders-dummy.deb'. Ign:1 copy:/<>/resolver-nzXczV/apt_archive ./ InRelease Get:2 copy:/<>/resolver-nzXczV/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-nzXczV/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-nzXczV/apt_archive ./ Sources [241 B] Get:5 copy:/<>/resolver-nzXczV/apt_archive ./ Packages [559 B] Fetched 2919 B in 0s (200 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install r-cran-stanheaders build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-9 groff-base icu-devtools intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-9-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu-dev libicu63 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libncurses-dev libncurses5-dev libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db pkg-config po-debconf r-base-core r-base-dev r-cran-lattice r-cran-littler r-cran-matrix r-cran-pkgkitten r-cran-rcpp r-cran-rcppeigen ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-9-multilib gfortran-9-doc libcoarrays-dev groff liblapack-doc krb5-doc krb5-user icu-doc liblzma-doc ncurses-doc readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk m4-doc apparmor less www-browser libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo r-cran-getopt r-cran-inline Recommended packages: devscripts curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libpng-tools publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl r-recommended r-doc-html libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-9 groff-base icu-devtools intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-9-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu-dev libicu63 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libncurses-dev libncurses5-dev libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libssh-4 libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libuchardet0 libwebp6 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db pkg-config po-debconf r-base-core r-base-dev r-cran-lattice r-cran-littler r-cran-matrix r-cran-pkgkitten r-cran-rcpp r-cran-rcppeigen sbuild-build-depends-r-cran-stanheaders-dummy ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 147 newly installed, 0 to remove and 0 not upgraded. Need to get 90.5 MB of archives. After this operation, 295 MB of additional disk space will be used. Get:1 copy:/<>/resolver-nzXczV/apt_archive ./ sbuild-build-depends-r-cran-stanheaders-dummy 0.invalid.0 [892 B] Get:2 http://ftpmaster.internal/ubuntu focal/main amd64 libbsd0 amd64 0.10.0-1 [45.4 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main amd64 bsdmainutils amd64 11.1.2ubuntu2 [181 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main amd64 groff-base amd64 1.22.4-4 [865 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main amd64 libpipeline1 amd64 1.5.2-2 [27.8 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main amd64 man-db amd64 2.9.0-2 [1114 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main amd64 libmagic-mgc amd64 1:5.37-6ubuntu1 [209 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main amd64 libmagic1 amd64 1:5.37-6ubuntu1 [75.4 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main amd64 file amd64 1:5.37-6ubuntu1 [23.2 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main amd64 libelf1 amd64 0.176-1.1build1 [44.0 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main amd64 libexpat1 amd64 2.2.9-1 [73.3 kB] Get:13 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libfribidi0 amd64 1.0.8-2 [23.8 kB] Get:14 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libglib2.0-0 amd64 2.63.3-3 [1278 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main amd64 libicu63 amd64 63.2-2 [8294 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main amd64 libxml2 amd64 2.9.4+dfsg1-8ubuntu3 [648 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main amd64 ucf all 3.0038+nmu1 [51.6 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main amd64 gettext-base amd64 0.19.8.1-10 [50.2 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main amd64 libkrb5support0 amd64 1.17-6ubuntu3 [31.0 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main amd64 libk5crypto3 amd64 1.17-6ubuntu3 [80.2 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main amd64 libkeyutils1 amd64 1.6-6ubuntu1 [10.2 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main amd64 libkrb5-3 amd64 1.17-6ubuntu3 [329 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main amd64 libgssapi-krb5-2 amd64 1.17-6ubuntu3 [121 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main amd64 libpsl5 amd64 0.20.2-2 [50.0 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main amd64 libxau6 amd64 1:1.0.9-0ubuntu1 [7488 B] Get:26 http://ftpmaster.internal/ubuntu focal/main amd64 libxdmcp6 amd64 1:1.1.3-0ubuntu1 [10.6 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main amd64 libxcb1 amd64 1.13.1-3build1 [45.3 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main amd64 libx11-data all 2:1.6.8-1 [113 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main amd64 libx11-6 amd64 2:1.6.8-1 [573 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main amd64 libxext6 amd64 2:1.3.4-0ubuntu1 [29.1 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main amd64 libxmuu1 amd64 2:1.1.3-0ubuntu1 [9728 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all 12.7.3ubuntu1 [52.1 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main amd64 libarchive-zip-perl all 1.67-1 [90.4 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main amd64 libsub-override-perl all 0.09-2 [9532 B] Get:45 http://ftpmaster.internal/ubuntu focal/main amd64 libfile-stripnondeterminism-perl all 1.6.3-2 [16.0 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main amd64 dh-strip-nondeterminism all 1.6.3-2 [5228 B] Get:47 http://ftpmaster.internal/ubuntu focal/main amd64 dwz amd64 0.13-5 [151 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main amd64 libcroco3 amd64 0.6.13-1 [82.5 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main amd64 gettext amd64 0.19.8.1-10 [897 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main amd64 po-debconf all 1.0.21 [233 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main amd64 debhelper all 12.7.3ubuntu1 [896 kB] Get:53 http://ftpmaster.internal/ubuntu focal/main amd64 zip amd64 3.0-11build1 [167 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main amd64 unzip amd64 6.0-25ubuntu1 [169 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main amd64 libpaper1 amd64 1.1.28 [13.0 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main amd64 libpaper-utils amd64 1.1.28 [8400 B] Get:57 http://ftpmaster.internal/ubuntu focal/main amd64 xdg-utils all 1.1.3-1ubuntu2 [60.5 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main amd64 libblas3 amd64 3.9.0-1 [142 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main amd64 libfreetype6 amd64 2.10.1-2 [341 kB] Get:60 http://ftpmaster.internal/ubuntu focal/main amd64 fonts-dejavu-core all 2.37-1 [1041 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main amd64 fontconfig-config all 2.13.1-2ubuntu2 [28.9 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main amd64 libfontconfig1 amd64 2.13.1-2ubuntu2 [114 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main amd64 libpixman-1-0 amd64 0.38.4-0ubuntu1 [227 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main amd64 libxcb-render0 amd64 1.13.1-3build1 [14.9 kB] Get:65 http://ftpmaster.internal/ubuntu focal/main amd64 libxcb-shm0 amd64 1.13.1-3build1 [5584 B] Get:66 http://ftpmaster.internal/ubuntu focal/main amd64 libxrender1 amd64 1:0.9.10-1 [18.7 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main amd64 libcairo2 amd64 1.16.0-4ubuntu1 [583 kB] Get:68 http://ftpmaster.internal/ubuntu focal/main amd64 libbrotli1 amd64 1.0.7-6 [267 kB] Get:69 http://ftpmaster.internal/ubuntu focal/main amd64 libroken18-heimdal amd64 7.7.0+dfsg-1 [41.9 kB] Get:70 http://ftpmaster.internal/ubuntu focal/main amd64 libasn1-8-heimdal amd64 7.7.0+dfsg-1 [181 kB] Get:71 http://ftpmaster.internal/ubuntu focal/main amd64 libheimbase1-heimdal amd64 7.7.0+dfsg-1 [29.7 kB] Get:72 http://ftpmaster.internal/ubuntu focal/main amd64 libhcrypto4-heimdal amd64 7.7.0+dfsg-1 [87.8 kB] Get:73 http://ftpmaster.internal/ubuntu focal/main amd64 libwind0-heimdal amd64 7.7.0+dfsg-1 [47.9 kB] Get:74 http://ftpmaster.internal/ubuntu focal/main amd64 libhx509-5-heimdal amd64 7.7.0+dfsg-1 [107 kB] Get:75 http://ftpmaster.internal/ubuntu focal/main amd64 libkrb5-26-heimdal amd64 7.7.0+dfsg-1 [207 kB] Get:76 http://ftpmaster.internal/ubuntu focal/main amd64 libheimntlm0-heimdal amd64 7.7.0+dfsg-1 [15.1 kB] Get:77 http://ftpmaster.internal/ubuntu focal/main amd64 libgssapi3-heimdal amd64 7.7.0+dfsg-1 [96.6 kB] Get:78 http://ftpmaster.internal/ubuntu focal/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2 [14.9 kB] Get:79 http://ftpmaster.internal/ubuntu focal/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2 [49.3 kB] Get:80 http://ftpmaster.internal/ubuntu focal/main amd64 libldap-common all 2.4.48+dfsg-1ubuntu4 [16.9 kB] Get:81 http://ftpmaster.internal/ubuntu focal/main amd64 libldap-2.4-2 amd64 2.4.48+dfsg-1ubuntu4 [155 kB] Get:82 http://ftpmaster.internal/ubuntu focal/main amd64 libnghttp2-14 amd64 1.40.0-1 [78.1 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2build1 [54.9 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main amd64 libssh-4 amd64 0.9.3-2ubuntu1 [170 kB] Get:85 http://ftpmaster.internal/ubuntu focal/main amd64 libcurl4 amd64 7.66.0-1ubuntu1 [232 kB] Get:86 http://ftpmaster.internal/ubuntu focal/main amd64 libjpeg-turbo8 amd64 2.0.3-0ubuntu1 [118 kB] Get:87 http://ftpmaster.internal/ubuntu focal/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B] Get:88 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libgfortran5 amd64 9.2.1-25ubuntu1 [642 kB] Get:89 http://ftpmaster.internal/ubuntu focal/main amd64 liblapack3 amd64 3.9.0-1 [2155 kB] Get:90 http://ftpmaster.internal/ubuntu focal/main amd64 fontconfig amd64 2.13.1-2ubuntu2 [171 kB] Get:91 http://ftpmaster.internal/ubuntu focal/main amd64 libgraphite2-3 amd64 1.3.13-11 [73.7 kB] Get:92 http://ftpmaster.internal/ubuntu focal/main amd64 libharfbuzz0b amd64 2.6.4-1ubuntu1 [391 kB] Get:93 http://ftpmaster.internal/ubuntu focal/main amd64 libthai-data all 0.1.28-3 [134 kB] Get:94 http://ftpmaster.internal/ubuntu focal/main amd64 libdatrie1 amd64 0.2.12-3 [18.7 kB] Get:95 http://ftpmaster.internal/ubuntu focal/main amd64 libthai0 amd64 0.1.28-3 [18.1 kB] Get:96 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libpango-1.0-0 amd64 1.44.7-1ubuntu1 [161 kB] Get:97 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libpangoft2-1.0-0 amd64 1.44.7-1ubuntu1 [34.8 kB] Get:98 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libpangocairo-1.0-0 amd64 1.44.7-1ubuntu1 [24.8 kB] Get:99 http://ftpmaster.internal/ubuntu focal/main amd64 libtcl8.6 amd64 8.6.10+dfsg-1 [902 kB] Get:100 http://ftpmaster.internal/ubuntu focal/main amd64 libjbig0 amd64 2.1-3.1build1 [26.7 kB] Get:101 http://ftpmaster.internal/ubuntu focal/main amd64 libwebp6 amd64 0.6.1-2 [185 kB] Get:102 http://ftpmaster.internal/ubuntu focal/main amd64 libtiff5 amd64 4.1.0+git191117-2 [162 kB] Get:103 http://ftpmaster.internal/ubuntu focal/main amd64 libxft2 amd64 2.3.3-0ubuntu1 [39.2 kB] Get:104 http://ftpmaster.internal/ubuntu focal/main amd64 x11-common all 1:7.7+19ubuntu13 [22.4 kB] Get:105 http://ftpmaster.internal/ubuntu focal/main amd64 libxss1 amd64 1:1.2.3-1 [8140 B] Get:106 http://ftpmaster.internal/ubuntu focal/main amd64 libtk8.6 amd64 8.6.10-1 [714 kB] Get:107 http://ftpmaster.internal/ubuntu focal/main amd64 libice6 amd64 2:1.0.10-0ubuntu1 [41.0 kB] Get:108 http://ftpmaster.internal/ubuntu focal/main amd64 libsm6 amd64 2:1.2.3-1 [16.1 kB] Get:109 http://ftpmaster.internal/ubuntu focal/main amd64 libxt6 amd64 1:1.1.5-1 [160 kB] Get:110 http://ftpmaster.internal/ubuntu focal/universe amd64 r-base-core amd64 3.6.2-2 [24.6 MB] Get:111 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libgfortran-9-dev amd64 9.2.1-25ubuntu1 [685 kB] Get:112 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 gfortran-9 amd64 9.2.1-25ubuntu1 [10.4 MB] Get:113 http://ftpmaster.internal/ubuntu focal/main amd64 gfortran amd64 4:9.2.1-3.1ubuntu1 [1376 B] Get:114 http://ftpmaster.internal/ubuntu focal/main amd64 libblas-dev amd64 3.9.0-1 [147 kB] Get:115 http://ftpmaster.internal/ubuntu focal/main amd64 liblapack-dev amd64 3.9.0-1 [4243 kB] Get:116 http://ftpmaster.internal/ubuntu focal/main amd64 libncurses-dev amd64 6.1+20191019-1ubuntu1 [339 kB] Get:117 http://ftpmaster.internal/ubuntu focal/main amd64 libncurses5-dev amd64 6.1+20191019-1ubuntu1 [992 B] Get:118 http://ftpmaster.internal/ubuntu focal/main amd64 libreadline-dev amd64 8.0-3 [141 kB] Get:119 http://ftpmaster.internal/ubuntu focal/main amd64 libjpeg-turbo8-dev amd64 2.0.3-0ubuntu1 [238 kB] Get:120 http://ftpmaster.internal/ubuntu focal/main amd64 libjpeg8-dev amd64 8c-2ubuntu8 [1552 B] Get:121 http://ftpmaster.internal/ubuntu focal/main amd64 libjpeg-dev amd64 8c-2ubuntu8 [1546 B] Get:122 http://ftpmaster.internal/ubuntu focal/main amd64 libpcre2-16-0 amd64 10.34-7 [181 kB] Get:123 http://ftpmaster.internal/ubuntu focal/main amd64 libpcre2-32-0 amd64 10.34-7 [169 kB] Get:124 http://ftpmaster.internal/ubuntu focal/main amd64 libpcre2-posix2 amd64 10.34-7 [5992 B] Get:125 http://ftpmaster.internal/ubuntu focal/main amd64 libpcre2-dev amd64 10.34-7 [670 kB] Get:126 http://ftpmaster.internal/ubuntu focal/main amd64 libpcre16-3 amd64 2:8.39-12 [149 kB] Get:127 http://ftpmaster.internal/ubuntu focal/main amd64 libpcre32-3 amd64 2:8.39-12 [140 kB] Get:128 http://ftpmaster.internal/ubuntu focal/main amd64 libpcrecpp0v5 amd64 2:8.39-12 [15.4 kB] Get:129 http://ftpmaster.internal/ubuntu focal/main amd64 libpcre3-dev amd64 2:8.39-12 [542 kB] Get:130 http://ftpmaster.internal/ubuntu focal/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-1ubuntu3 [172 kB] Get:131 http://ftpmaster.internal/ubuntu focal/main amd64 libpng-dev amd64 1.6.37-1 [176 kB] Get:132 http://ftpmaster.internal/ubuntu focal/main amd64 libbz2-dev amd64 1.0.8-2 [30.2 kB] Get:133 http://ftpmaster.internal/ubuntu focal/main amd64 liblzma-dev amd64 5.2.4-1 [145 kB] Get:134 http://ftpmaster.internal/ubuntu focal/main amd64 icu-devtools amd64 63.2-2 [180 kB] Get:135 http://ftpmaster.internal/ubuntu focal/main amd64 libicu-dev amd64 63.2-2 [9178 kB] Get:136 http://ftpmaster.internal/ubuntu focal/main amd64 pkg-config amd64 0.29.1-0ubuntu3 [45.2 kB] Get:137 http://ftpmaster.internal/ubuntu focal/universe amd64 r-base-dev all 3.6.2-2 [4528 B] Get:138 http://ftpmaster.internal/ubuntu focal/main amd64 libfile-which-perl all 1.23-1 [13.8 kB] Get:139 http://ftpmaster.internal/ubuntu focal/universe amd64 libswitch-perl all 2.17-2 [18.8 kB] Get:140 http://ftpmaster.internal/ubuntu focal/universe amd64 dh-r all 20200104 [34.7 kB] Get:141 http://ftpmaster.internal/ubuntu focal/universe amd64 r-cran-littler amd64 0.3.9-1 [300 kB] Get:142 http://ftpmaster.internal/ubuntu focal/universe amd64 littler all 0.3.9-1 [2420 B] Get:143 http://ftpmaster.internal/ubuntu focal/universe amd64 r-cran-lattice amd64 0.20-38-1 [1111 kB] Get:144 http://ftpmaster.internal/ubuntu focal/universe amd64 r-cran-matrix amd64 1.2-18-1 [3448 kB] Get:145 http://ftpmaster.internal/ubuntu focal/universe amd64 r-cran-pkgkitten all 0.1.5-1 [22.6 kB] Get:146 http://ftpmaster.internal/ubuntu focal/universe amd64 r-cran-rcpp amd64 1.0.3-1 [1868 kB] Get:147 http://ftpmaster.internal/ubuntu focal/universe amd64 r-cran-rcppeigen amd64 0.3.3.7.0-1 [1354 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 90.5 MB in 3s (26.6 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 14660 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2ubuntu2_amd64.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../002-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-4_amd64.deb ... Unpacking groff-base (1.22.4-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../004-libpipeline1_1.5.2-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.2-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.9.0-2_amd64.deb ... Unpacking man-db (2.9.0-2) ... 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Unpacking libkrb5support0:amd64 (1.17-6ubuntu3) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../018-libk5crypto3_1.17-6ubuntu3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.17-6ubuntu3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../019-libkeyutils1_1.6-6ubuntu1_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6-6ubuntu1) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../020-libkrb5-3_1.17-6ubuntu3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.17-6ubuntu3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../021-libgssapi-krb5-2_1.17-6ubuntu3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.17-6ubuntu3) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../022-libpsl5_0.20.2-2_amd64.deb ... Unpacking libpsl5:amd64 (0.20.2-2) ... Selecting previously unselected package libxau6:amd64. 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Selecting previously unselected package gettext. Preparing to unpack .../047-gettext_0.19.8.1-10_amd64.deb ... Unpacking gettext (0.19.8.1-10) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../048-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../049-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../050-debhelper_12.7.3ubuntu1_all.deb ... Unpacking debhelper (12.7.3ubuntu1) ... Selecting previously unselected package zip. Preparing to unpack .../051-zip_3.0-11build1_amd64.deb ... Unpacking zip (3.0-11build1) ... Selecting previously unselected package unzip. Preparing to unpack .../052-unzip_6.0-25ubuntu1_amd64.deb ... Unpacking unzip (6.0-25ubuntu1) ... Selecting previously unselected package libpaper1:amd64. 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Setting up libwind0-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up liblapack-dev:amd64 (3.9.0-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-6ubuntu3) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up libssh-4:amd64 (0.9.3-2ubuntu1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.6.3-2) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up libx11-6:amd64 (2:1.6.8-1) ... Setting up libtiff5:amd64 (4.1.0+git191117-2) ... Setting up libfontconfig1:amd64 (2.13.1-2ubuntu2) ... Setting up libjpeg8-dev:amd64 (8c-2ubuntu8) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libxmuu1:amd64 (2:1.1.3-0ubuntu1) ... Setting up automake (1:1.16.1-4ubuntu4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up fontconfig (2.13.1-2ubuntu2) ... Regenerating fonts cache... done. Setting up gettext (0.19.8.1-10) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up gfortran-9 (9.2.1-25ubuntu1) ... Setting up libhx509-5-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up libpango-1.0-0:amd64 (1.44.7-1ubuntu1) ... Setting up libjpeg-dev:amd64 (8c-2ubuntu8) ... Setting up libxext6:amd64 (2:1.3.4-0ubuntu1) ... Setting up man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up gfortran (4:9.2.1-3.1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:amd64 (1.16.0-4ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxt6:amd64 (1:1.1.5-1) ... Setting up xauth (1:1.1-0ubuntu1) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libpangoft2-1.0-0:amd64 (1.44.7-1ubuntu1) ... Setting up libpangocairo-1.0-0:amd64 (1.44.7-1ubuntu1) ... Setting up libkrb5-26-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up libxft2:amd64 (2.3.3-0ubuntu1) ... Setting up po-debconf (1.0.21) ... Setting up libtk8.6:amd64 (8.6.10-1) ... Setting up libheimntlm0-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up libgssapi3-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up libldap-2.4-2:amd64 (2.4.48+dfsg-1ubuntu4) ... Setting up libcurl4:amd64 (7.66.0-1ubuntu1) ... Setting up r-base-core (3.6.2-2) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-lattice (0.20-38-1) ... Setting up r-cran-pkgkitten (0.1.5-1) ... Setting up r-cran-littler (0.3.9-1) ... Setting up r-cran-rcpp (1.0.3-1) ... Setting up r-base-dev (3.6.2-2) ... Setting up littler (0.3.9-1) ... Setting up r-cran-matrix (1.2-18-1) ... Setting up r-cran-rcppeigen (0.3.3.7.0-1) ... Setting up debhelper (12.7.3ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up dh-r (20200104) ... Setting up sbuild-build-depends-r-cran-stanheaders-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.30-0ubuntu3) ... Processing triggers for systemd (244.1-0ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-171-generic amd64 (x86_64) Toolchain package versions: binutils_2.33.90.20200122-1ubuntu2 dpkg-dev_1.19.7ubuntu2 g++-9_9.2.1-25ubuntu1 gcc-9_9.2.1-25ubuntu1 libc6-dev_2.30-0ubuntu3 libstdc++-9-dev_9.2.1-25ubuntu1 libstdc++6_9.2.1-25ubuntu1 linux-libc-dev_5.4.0-12.15 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1 apt_1.9.7 autoconf_2.69-11.1 automake_1:1.16.1-4ubuntu4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11ubuntu2 base-passwd_3.5.47 bash_5.0-5ubuntu1 binutils_2.33.90.20200122-1ubuntu2 binutils-common_2.33.90.20200122-1ubuntu2 binutils-x86-64-linux-gnu_2.33.90.20200122-1ubuntu2 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.34-0.1ubuntu5 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110 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libxmuu1_2:1.1.3-0ubuntu1 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.1.5-1 libzstd1_1.4.4+dfsg-1 linux-libc-dev_5.4.0-12.15 littler_0.3.9-1 lockfile-progs_0.1.18 login_1:4.8-1ubuntu1 logsave_1.45.3-4ubuntu2 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.3-17ubuntu3 mount_2.34-0.1ubuntu5 ncurses-base_6.1+20191019-1ubuntu1 ncurses-bin_6.1+20191019-1ubuntu1 openssl_1.1.1d-2ubuntu3 optipng_0.7.7-1 passwd_1:4.8-1ubuntu1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6build1 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 pkg-config_0.29.1-0ubuntu3 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu3 r-base-core_3.6.2-2 r-base-dev_3.6.2-2 r-cran-lattice_0.20-38-1 r-cran-littler_0.3.9-1 r-cran-matrix_1.2-18-1 r-cran-pkgkitten_0.1.5-1 r-cran-rcpp_1.0.3-1 r-cran-rcppeigen_0.3.3.7.0-1 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-cran-stanheaders-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 systemd_244.1-0ubuntu2 systemd-sysv_244.1-0ubuntu2 sysvinit-utils_2.96-1ubuntu1 tar_1.30+dfsg-6 tzdata_2019c-3 ubuntu-keyring_2018.09.18.1 ucf_3.0038+nmu1 unzip_6.0-25ubuntu1 util-linux_2.34-0.1ubuntu5 x11-common_1:7.7+19ubuntu13 xauth_1:1.1-0ubuntu1 xdg-utils_1.1.3-1ubuntu2 xz-utils_5.2.4-1 zip_3.0-11build1 zlib1g_1:1.2.11.dfsg-1ubuntu3 zlib1g-dev_1:1.2.11.dfsg-1ubuntu3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu Jan 23 20:50:08 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-cran-stanheaders_2.21.0-1-1.dsc dpkg-source: info: extracting r-cran-stanheaders in r-cran-stanheaders-2.21.0-1 dpkg-source: info: unpacking r-cran-stanheaders_2.21.0-1.orig.tar.gz dpkg-source: info: unpacking r-cran-stanheaders_2.21.0-1-1.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-18604936 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-18604936 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-18604936 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package r-cran-stanheaders dpkg-buildpackage: info: source version 2.21.0-1-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules build make: 'build' is up to date. fakeroot debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install -O--buildsystem=R I: R Package: StanHeaders Version: 2.21.0-1 I: Building using R version 3.6.2-2 I: R API version: r-api-3.5 I: Using built-time from d/changelog: Thu, 23 Jan 2020 21:37:41 +0100 mkdir -p /<>/debian/r-cran-stanheaders/usr/lib/R/site-library R CMD INSTALL -l /<>/debian/r-cran-stanheaders/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 23 Jan 2020 21:37:41 +0100'" * installing *source* package ‘StanHeaders’ ... ** package ‘StanHeaders’ successfully unpacked and MD5 sums checked ** using staged installation ** libs make[1]: Entering directory '/<>/src' gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cvodes/cvodea.c -o cvodes/cvodea.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cvodes/cvodes_bandpre.c -o cvodes/cvodes_bandpre.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cvodes/cvodes.c -o cvodes/cvodes.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cvodes/cvodes_direct.c -o cvodes/cvodes_direct.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cvodes/cvodes_ls.c -o cvodes/cvodes_ls.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cvodes/cvodes_nls_sim.c -o cvodes/cvodes_nls_sim.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cvodes/cvodes_nls_stg.c -o cvodes/cvodes_nls_stg.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cvodes/cvodea_io.c -o cvodes/cvodea_io.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cvodes/cvodes_bbdpre.c -o cvodes/cvodes_bbdpre.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cvodes/cvodes_diag.c -o cvodes/cvodes_diag.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cvodes/cvodes_io.c -o cvodes/cvodes_io.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cvodes/cvodes_nls.c -o cvodes/cvodes_nls.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cvodes/cvodes_nls_stg1.c -o cvodes/cvodes_nls_stg1.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cvodes/cvodes_spils.c -o cvodes/cvodes_spils.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sundials/sundials_band.c -o sundials/sundials_band.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sundials/sundials_linearsolver.c -o sundials/sundials_linearsolver.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sundials/sundials_nonlinearsolver.c -o sundials/sundials_nonlinearsolver.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sundials/sundials_sparse.c -o sundials/sundials_sparse.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sundials/sundials_dense.c -o sundials/sundials_dense.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sundials/sundials_math.c -o sundials/sundials_math.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sundials/sundials_nvector.c -o sundials/sundials_nvector.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sundials/sundials_spbcgs.c -o sundials/sundials_spbcgs.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sundials/sundials_direct.c -o sundials/sundials_direct.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sundials/sundials_matrix.c -o sundials/sundials_matrix.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sundials/sundials_nvector_senswrapper.c -o sundials/sundials_nvector_senswrapper.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sundials/sundials_sptfqmr.c -o sundials/sundials_sptfqmr.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sundials/sundials_iterative.c -o sundials/sundials_iterative.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sundials/sundials_mpi.c -o sundials/sundials_mpi.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sundials/sundials_pcg.c -o sundials/sundials_pcg.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sundials/sundials_version.c -o sundials/sundials_version.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sunmatrix/band/sunmatrix_band.c -o sunmatrix/band/sunmatrix_band.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sunmatrix/dense/sunmatrix_dense.c -o sunmatrix/dense/sunmatrix_dense.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sunnonlinsol/newton/sunnonlinsol_newton.c -o sunnonlinsol/newton/sunnonlinsol_newton.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sunnonlinsol/fixedpoint/sunnonlinsol_fixedpoint.c -o sunnonlinsol/fixedpoint/sunnonlinsol_fixedpoint.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sunlinsol/dense/sunlinsol_dense.c -o sunlinsol/dense/sunlinsol_dense.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c idas/idaa.c -o idas/idaa.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c idas/idas_bbdpre.c -o idas/idas_bbdpre.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c idas/idas_direct.c -o idas/idas_direct.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c idas/idas_io.c -o idas/idas_io.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c idas/idas_nls.c -o idas/idas_nls.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c idas/idas_nls_stg.c -o idas/idas_nls_stg.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c idas/idaa_io.c -o idas/idaa_io.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c idas/idas.c -o idas/idas.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c idas/idas_ic.c -o idas/idas_ic.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c idas/idas_ls.c -o idas/idas_ls.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c idas/idas_nls_sim.c -o idas/idas_nls_sim.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c idas/idas_spils.c -o idas/idas_spils.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -DNO_FPRINTF_OUTPUT -I"../inst/include" -include stan_sundials_printf_override.hpp -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-DDoofu/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c nvector/serial/nvector_serial.c -o nvector/serial/nvector_serial.o ar -rs ../lib/libStanHeaders.a cvodes/cvodea.o cvodes/cvodes_bandpre.o cvodes/cvodes.o cvodes/cvodes_direct.o cvodes/cvodes_ls.o cvodes/cvodes_nls_sim.o cvodes/cvodes_nls_stg.o cvodes/cvodea_io.o cvodes/cvodes_bbdpre.o cvodes/cvodes_diag.o cvodes/cvodes_io.o cvodes/cvodes_nls.o cvodes/cvodes_nls_stg1.o cvodes/cvodes_spils.o sundials/sundials_band.o sundials/sundials_linearsolver.o sundials/sundials_nonlinearsolver.o sundials/sundials_sparse.o sundials/sundials_dense.o sundials/sundials_math.o sundials/sundials_nvector.o sundials/sundials_spbcgs.o sundials/sundials_direct.o sundials/sundials_matrix.o sundials/sundials_nvector_senswrapper.o sundials/sundials_sptfqmr.o sundials/sundials_iterative.o sundials/sundials_mpi.o sundials/sundials_pcg.o sundials/sundials_version.o sunmatrix/band/sunmatrix_band.o sunmatrix/dense/sunmatrix_dense.o sunnonlinsol/newton/sunnonlinsol_newton.o sunnonlinsol/fixedpoint/sunnonlinsol_fixedpoint.o sunlinsol/dense/sunlinsol_dense.o idas/idaa.o idas/idas_bbdpre.o idas/idas_direct.o idas/idas_io.o idas/idas_nls.o idas/idas_nls_stg.o idas/idaa_io.o idas/idas.o idas/idas_ic.o idas/idas_ls.o idas/idas_nls_sim.o idas/idas_spils.o nvector/serial/nvector_serial.o ar: creating ../lib/libStanHeaders.a make[1]: Leaving directory '/<>/src' make[1]: Entering directory '/<>/src' make[1]: Leaving directory '/<>/src' installing via 'install.libs.R' to /<>/debian/r-cran-stanheaders/usr/lib/R/site-library/00LOCK-r-cran-stanheaders-2.21.0-1/00new/StanHeaders ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (StanHeaders) rm -f /<>/debian/r-cran-stanheaders/usr/lib/R/site-library/StanHeaders/LICENSE Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 292. 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W: Ignoring specified R dependency: R (>= 3.4.0) I: Using r-cran-rcpp for Suggests:Rcpp I: Using r-cran-bh for Suggests:BH I: Using r-cran-knitr for Suggests:knitr (>= 1.15.1) I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-cran-matrix for Suggests:Matrix I: Using r-cran-rstan for Suggests:rstan I: Using r-cran-rcppparallel for Suggests:RcppParallel I: Using r-cran-rcppeigen for LinkingTo:RcppEigen dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installinit -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms find debian -name "*.hpp" -exec chmod -x \{\} \; make[1]: Leaving directory '/<>' dh_missing -O--buildsystem=R dh_dwz -O--buildsystem=R dh_strip -O--buildsystem=R dh_makeshlibs -O--buildsystem=R dh_shlibdeps -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dpkg-gencontrol: warning: Depends field of package r-cran-stanheaders: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R INFO: pkgstriptranslations version 144 pkgstriptranslations: processing r-cran-stanheaders (in debian/r-cran-stanheaders); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-cran-stanheaders/DEBIAN/control, package r-cran-stanheaders, directory debian/r-cran-stanheaders pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-cran-stanheaders ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-cran-stanheaders' in '../r-cran-stanheaders_2.21.0-1-1_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../r-cran-stanheaders_2.21.0-1-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20200124-0514 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-cran-stanheaders_2.21.0-1-1_amd64.changes: -------------------------------------------- Format: 1.8 Date: Thu, 23 Jan 2020 21:37:41 +0100 Source: r-cran-stanheaders Binary: r-cran-stanheaders Architecture: amd64 Version: 2.21.0-1-1 Distribution: focal-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: r-cran-stanheaders - C++ Header Files for Stan for GNU R Changes: r-cran-stanheaders (2.21.0-1-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.5.0 (routine-update) * dh-update-R to update Build-Depends (routine-update) Checksums-Sha1: 5ece1427af05e1b09339623c8c74dad2cc861742 8937 r-cran-stanheaders_2.21.0-1-1_amd64.buildinfo dd3d977f93937022913dd48ae33e65fe3728ab8a 796864 r-cran-stanheaders_2.21.0-1-1_amd64.deb Checksums-Sha256: 50f5dd841654e312a673574ade5c9ac823a57964342aac3fcb40bd0a245a6383 8937 r-cran-stanheaders_2.21.0-1-1_amd64.buildinfo f013d16cc38da5b753b8e600384e485101da455de8fff964844f92c52e3ebdda 796864 r-cran-stanheaders_2.21.0-1-1_amd64.deb Files: cbc538c129ec7e411e71f4e6ea16f62f 8937 gnu-r optional r-cran-stanheaders_2.21.0-1-1_amd64.buildinfo a133bf4f67fc7a74dabab82fb6331ca5 796864 gnu-r optional r-cran-stanheaders_2.21.0-1-1_amd64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-cran-stanheaders_2.21.0-1-1_amd64.deb --------------------------------------- new debian package, version 2.0. size 796864 bytes: control archive=51184 bytes. 1664 bytes, 28 lines control 244864 bytes, 2070 lines md5sums Package: r-cran-stanheaders Version: 2.21.0-1-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian R Packages Maintainers Installed-Size: 7178 Depends: r-base-core (>= 3.6.2-2), r-api-3.5, r-cran-rcppeigen Suggests: r-cran-rcpp, r-cran-bh, r-cran-knitr (>= 1.15.1), r-cran-rmarkdown, r-cran-matrix, r-cran-rstan, r-cran-rcppparallel Section: gnu-r Priority: optional Homepage: https://cran.r-project.org/package=StanHeaders Description: C++ Header Files for Stan for GNU R The C++ header files of the Stan project are provided by this package, but it contains no R code, vignettes, or function documentation. There is a shared object containing part of the 'CVODES' library, but it is not accessible from R. 'StanHeaders' is only useful for developers who want to utilize the 'LinkingTo' directive of their package's DESCRIPTION file to build on the Stan library without incurring unnecessary dependencies. The Stan project develops a probabilistic programming language that implements full or approximate Bayesian statistical inference via Markov Chain Monte Carlo or 'variational' methods and implements (optionally penalized) maximum likelihood estimation via optimization. The Stan library includes an advanced automatic differentiation scheme, 'templated' statistical and linear algebra functions that can handle the automatically 'differentiable' scalar types (and doubles, 'ints', etc.), and a parser for the Stan language. 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+------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 31904 Build-Time: 23 Distribution: focal-proposed Host Architecture: amd64 Install-Time: 24 Job: r-cran-stanheaders_2.21.0-1-1.dsc Machine Architecture: amd64 Package: r-cran-stanheaders Package-Time: 49 Source-Version: 2.21.0-1-1 Space: 31904 Status: successful Version: 2.21.0-1-1 -------------------------------------------------------------------------------- Finished at 20200124-0514 Build needed 00:00:49, 31904k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=amd64 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