rapmap 0.12.0+dfsg-3 source package in Ubuntu

Changelog

rapmap (0.12.0+dfsg-3) unstable; urgency=medium

  * debian/patches/portable_pause: add ppc64el and arm64 alternatives to
    asm("pause").
  * debian/patches/no_gomp_needed: Avoid unnecessary linkage to gomp.

 -- Michael R. Crusoe <email address hidden>  Wed, 02 Jan 2019 03:07:04 -0800

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Uploaded by:
Debian Med on 2019-01-02
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Eoan release on 2019-04-18 universe misc
Disco release on 2019-01-02 universe misc

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rapmap_0.12.0+dfsg-3.dsc 2.2 KiB 4a304e188610f3cfc80473f8d4fb82aeb118ddc039b9c761a1c3dcca281d828e
rapmap_0.12.0+dfsg.orig.tar.xz 534.7 KiB 13a03f40f7a43f89a5f274c13178985285017a0e8ccc2df6e22674ae3769b447
rapmap_0.12.0+dfsg-3.debian.tar.xz 10.6 KiB 7e8c697c7ff293c9fb40fa4861d5b389198e5e4a8b603a02a7337377f8f1afa3

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Binary packages built by this source

rapmap: rapid sensitive and accurate DNA read mapping via quasi-mapping

 RapMap is a testing ground for ideas in quasi-mapping / (lightweight /
 pseudo) transcriptome alignment. That means that, at this point, it is
 somewhat experimental. The develop branch will have the latest
 improvements and additions, but is not guaranteed to be stable between
 commits. Breaking changes to the master branch will be accompanied by a
 tag to the version before the breaking change. Currently, RapMap is a
 stand-alone quasi-mapper that can be used with other tools. It is also
 being used as part of Sailfish and Salmon. Eventually, the hope is to
 create and stabilize an API so that it can be used as a library from
 other tools.
 .
 Quasi-mapping / (lightweight / pseudo)-alignment is the term that is
 used here for the type of information required for certain tasks (e.g.
 transcript quantification) that is less "heavyweight" than what is
 provided by traditional alignment. For example, one may only need to
 know the transcripts / contigs to which a read aligns and, perhaps, the
 position within those transcripts rather than the optimal alignment and
 base-for-base CIGAR string that aligns the read and substring of the
 transcript. For details on RapMap (quasi-mapping in particular), please
 check out the associated paper. Note: RapMap implements both quasi-
 mapping and pseudo-alignment (originally introduced in Bray et al.
 2016), these two are not the same thing. They are distinct concepts, and
 RapMap simply happens to implement algorithms for computing both.

rapmap-dbgsym: debug symbols for rapmap
rapmap-dev: rapmap - rapid sensitive and accurate DNA read mapping (some headers)

 RapMap is a testing ground for ideas in quasi-mapping / (lightweight /
 pseudo) transcriptome alignment. That means that, at this point, it is
 somewhat experimental. The develop branch will have the latest
 improvements and additions, but is not guaranteed to be stable between
 commits. Breaking changes to the master branch will be accompanied by a
 tag to the version before the breaking change. Currently, RapMap is a
 stand-alone quasi-mapper that can be used with other tools. It is also
 being used as part of Sailfish and Salmon. Eventually, the hope is to
 create and stabilize an API so that it can be used as a library from
 other tools.
 .
 This package contains some headers and C++ source files which are
 included by package salmon and are provided here in an accessible
 way to avoid code duplication. Usually there is no reason to install
 this package except to build the salmon package.

rapmap-example-data: example data for rapmap - rapid sensitive and accurate DNA read mapping

 RapMap is a testing ground for ideas in quasi-mapping / (lightweight /
 pseudo) transcriptome alignment. That means that, at this point, it is
 somewhat experimental. The develop branch will have the latest
 improvements and additions, but is not guaranteed to be stable between
 commits. Breaking changes to the master branch will be accompanied by a
 tag to the version before the breaking change. Currently, RapMap is a
 stand-alone quasi-mapper that can be used with other tools. It is also
 being used as part of Sailfish and Salmon. Eventually, the hope is to
 create and stabilize an API so that it can be used as a library from
 other tools.
 .
 This package contains example data to test this program.